HHsearch alignment for GI: 254780627 and conserved domain: pfam03969

>pfam03969 AFG1_ATPase AFG1-like ATPase. This family of proteins contains a P-loop motif and are predicted to be ATPases.
Probab=94.29  E-value=0.13  Score=31.43  Aligned_cols=85  Identities=18%  Similarity=0.190  Sum_probs=63.1

Q ss_pred             CCEEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCC-C-HHHHHHHHHHHHHHCCCEEEEECCCCHHH
Q ss_conf             816864698889999999861988999999740310205444453175-0-69999999999885698799964875676
Q gi|254780627|r  227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L-IQHEFCHLLNSLLDSAKQVVAAADRPPSE  304 (502)
Q Consensus       227 ~~v~y~~~e~F~~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk-~-tqee~f~~~n~l~~~gkqiv~tsd~~P~~  304 (502)
T Consensus       258 ~~v~~f~F~~LC~~------p~~~~DYl~ia~~f~~v~i~~VP~l~~~~~d~arRFI~LID~lYd~~~kL~~sa~~~~~~  331 (361)
T pfam03969       258 GDLVWFSFADLCLA------PRHPSDYLALAERFSTVFLTDVPPMTRCSQDEARRFIALVDELYDRHVKLVASAEAALDD  331 (361)
T ss_pred             CCEECCCHHHHHHC------CCCHHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCHHH
T ss_conf             88500128888665------588899999998699999889988999870899999999999840799789987899999


Q ss_pred             HCC---C---CHHHHHHHH
Q ss_conf             136---3---034576530
Q gi|254780627|r  305 LES---L---DPRIRSRLQ  317 (502)
Q Consensus       305 l~~---l---~~rL~SR~~  317 (502)
T Consensus       332 Ly~g~~~~f~f~Rt~SRL~  350 (361)
T pfam03969       332 LYRGGRLAFEFQRTLSRLL  350 (361)
T ss_pred             HCCCCCCHHHHHHHHHHHH
T ss_conf             6489842011049879999