HHsearch alignment for GI: 254780627 and conserved domain: pfam06144
>pfam06144 DNA_pol3_delta DNA polymerase III, delta subunit. DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction. The delta subunit is also known as HolA.
Probab=97.20 E-value=0.014 Score=38.31 Aligned_cols=165 Identities=12% Similarity=0.110 Sum_probs=106.2
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHC-CCCCEEEEEHHHHH-HHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHCCCCHH
Q ss_conf 9862788885799999999998630-68816864698889-999999861988999999740310205444453175069
Q gi|254780627|r 200 FIHASVGLGKTHLLQAIANASIKRQ-PNLRVVYLTAEYFM-WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 (502)
Q Consensus 200 fi~G~~GlGKTHLl~ai~~~~~~~~-~~~~v~y~~~e~F~-~~~~~a~~~~~~~~fr~~~r~~DvLliDDiqfl~gk~tq 277 (502)
T Consensus 2 ll~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~~~~~~~i~~~~~t~sl--F----~~~rlvii~~~~~~~~~~~~ 75 (172)
T pfam06144 2 LLYGEDPFLLEETKDQILKAALDQGFEDFNYIYFDLEEDWADDVLEECETLPF--F----SDKRIVILNNPNLKESKLNE 75 (172)
T ss_pred EEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHCCCCC--C----CCCEEEEEECCCCCCCCCCH
T ss_conf 79728599999999999999737997303689862776669999999728998--8----89769999776424455539
Q ss_pred H---HHHHHHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 9---9999999988569879996487567613630345765302115775158889999999999988643116897898
Q gi|254780627|r 278 H---EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 (502)
Q Consensus 278 e---e~f~~~n~l~~~gkqiv~tsd~~P~~l~~l~~rL~SR~~~Gl~~~i~~Pd~e~r~~Il~~k~~~~~~~~~~~~l~~ 354 (502)
T Consensus 76 ~~~~~l~~~l~~~-~~~~~lv~~~~~~~~~~~k~---~k~l~k~~~~i~~~~~~~~~l~~wi~~~-----~~~~g~~i~~ 146 (172)
T pfam06144 76 KLLKRLEEYLSNP-PEDTLLIIEAPGKLDERKKL---TKLLKKKATVVECFTLKEEELIQWIQKR-----AKELGLKIEK 146 (172)
T ss_pred HHHHHHHHHHHCC-CCCEEEEEEECCCHHHHHHH---HHHHHHCCEEEEECCCCHHHHHHHHHHH-----HHHCCCCCCH
T ss_conf 9999999998369-98728999836741367888---9999837669993489878999999999-----9984999899
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 9999998502788899999999999
Q gi|254780627|r 355 EVLMHVARTVTTSGRELDGAFNQLV 379 (502)
Q Consensus 355 ~v~~~la~~~~~~vR~Legal~~l~ 379 (502)
T Consensus 147 ~a~~~L~~~~g~nl~~l~~EieKL~ 171 (172)
T pfam06144 147 DALQLLAEKVENNLLAIAQELEKLA 171 (172)
T ss_pred HHHHHHHHHHCHHHHHHHHHHHHHC
T ss_conf 9999999997848999999999766