HHsearch alignment for GI: 254780627 and conserved domain: pfam08433

>pfam08433 KTI12 Chromatin associated protein KTI12. This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II. The Elongator complex has histone acetyltransferase activity.
Probab=94.82  E-value=0.39  Score=28.11  Aligned_cols=101  Identities=12%  Similarity=0.232  Sum_probs=66.4

Q ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHH---HHHHHHHHCCCH-----HHHHHHHHHCCHHHHHHHHH
Q ss_conf             8986278888579999999999863068816864698889---999999861988-----99999974031020544445
Q gi|254780627|r  199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM---WRFASAIRDNCA-----LNLKDSLRNIDLLLIDDMQF  270 (502)
Q Consensus       199 Lfi~G~~GlGKTHLl~ai~~~~~~~~~~~~v~y~~~e~F~---~~~~~a~~~~~~-----~~fr~~~r~~DvLliDDiqf  270 (502)
T Consensus         2 ivl~G~P~SGKSt~A~~L~~~l~~~--~~~v~vi~d~~~~~~~~~y~~s~~Ek~~R~~l~s~v~r~Ls~~~iVIlD~~NY   79 (266)
T pfam08433         2 IILTGLPSSGKSTRAKELAKYLEEK--GYDVIVISDESLGIESDDYKDSKKEKFLRGSLRSAVKRDLSKNTIVIVDSLNY   79 (266)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             7985799996889999999999975--99389978001267531000104789999999999987516688899548740


Q ss_pred             HCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHH
Q ss_conf             31750699999999998856987999648756761
Q gi|254780627|r  271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL  305 (502)
Q Consensus       271 l~gk~tqee~f~~~n~l~~~gkqiv~tsd~~P~~l  305 (502)
T Consensus        80 iKG~--RYEL~C~Ak--~~~t~~c~v~~~~p~e~~  110 (266)
T pfam08433        80 IKGF--RYELYCIAK--EAKTTYCVVYCKAPLDTC  110 (266)
T ss_pred             HHHH--HHHHHHHHH--HCCCCEEEEEECCCHHHH
T ss_conf             4568--999999998--638884899968998999