HHsearch alignment for GI: 254780627 and conserved domain: pfam11490
>pfam11490 DNA_pol3_alph_N DNA polymerase III polC-type N-terminus. This is an N-terminal domain of DNA polymerase III polC subunit A that is found only in Firmicutes. DNA polymerase polC-type III enzyme functions as the 'replicase' in low G + C Gram-positive bacteria. Purine asymmetry is a characteristic of organisms with a heterodimeric DNA polymerase III alpha-subunit constituted by polC which probably plays a direct role in the maintenance of strand-biased gene distribution; since, among prokaryotic genomes, the distribution of genes on the leading and lagging strands of the replication fork is known to be biased. The domain is associated with DNA_pol3_alpha pfam07733.
Probab=96.25 E-value=0.049 Score=34.50 Aligned_cols=80 Identities=13% Similarity=0.179 Sum_probs=65.4
Q ss_pred HCCCHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEECCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 30798999999999999866978897430240578853998989838989999999989999999999862776650789
Q gi|254780627|r 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEIL 110 (502)
Q Consensus 31 ~~~d~~~iW~~il~~Lk~~l~~~~F~tWi~pL~~i~~e~~~L~L~vPn~FikdwIe~~Y~~~I~~al~~~~g~~~~I~i~ 110 (502)
T Consensus 58 ~ee~l~~Yw~~iv~~~~~~--~p~~~~~l~~~~~-~~~~~~l~i~~~~e~~~~~lk~~~~~~~~~~~~~~gF~~~~~~v~ 134 (180)
T pfam11490 58 TEELLQDYWEYIVEELSKK--SPSLKSLLKKQKP-ELEGNKLIIKVPNEIEANFLKKKKLDKLLEEYIKFGFGKLKIDVE 134 (180)
T ss_pred HHHHHHHHHHHHHHHHHCC--CHHHHHHHHCCCE-EEECCEEEEEECCHHHHHHHHHHCCHHHHHHHHHCCCCCEEEEEE
T ss_conf 4999999999999986105--7899999854982-898999999969889999999851179999999748997058999
Q ss_pred EEC
Q ss_conf 721
Q gi|254780627|r 111 VRS 113 (502)
Q Consensus 111 i~~ 113 (502)
T Consensus 135 v~~ 137 (180)
T pfam11490 135 VDE 137 (180)
T ss_pred ECC
T ss_conf 765