HHsearch alignment for GI: 254780627 and conserved domain: smart00760
>smart00760 Bac_DnaA_C Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding.
Probab=99.75 E-value=2e-18 Score=150.99 Aligned_cols=60 Identities=47% Similarity=0.749 Sum_probs=59.2
Q ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCHHHCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCH
Q ss_conf 989999999998099999940888774014457999999998515687899988479843
Q gi|254780627|r 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 (502)
Q Consensus 410 ~~~~I~~~V~~~~~i~~~~l~s~~R~~~i~~~RqiamyL~r~~t~~s~~~IG~~fg~rdH 469 (502)
T Consensus 1 ti~~I~~~Va~~~~v~~~~i~s~~R~~~i~~aR~iamyL~r~~~~~s~~~IG~~fg~rdH 60 (60)
T smart00760 1 TIEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDH 60 (60)
T ss_pred CHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCC
T ss_conf 999999999988399799985679981688899999999999867999999999778998