BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] (502 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040304|gb|ACT57100.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/502 (100%), Positives = 502/502 (100%) Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ Sbjct: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60 Query: 61 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE Sbjct: 61 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120 Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA Sbjct: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR Sbjct: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR Sbjct: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV Sbjct: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK Sbjct: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE Sbjct: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 Query: 481 KMLETDITLKKEVELLKRLISE 502 KMLETDITLKKEVELLKRLISE Sbjct: 481 KMLETDITLKKEVELLKRLISE 502 >gi|315121828|ref|YP_004062317.1| chromosomal replication initiation protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495230|gb|ADR51829.1| chromosomal replication initiation protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 507 Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/507 (85%), Positives = 460/507 (90%), Gaps = 5/507 (0%) Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKR-CLEVNCESIFTIVSSRLKNQVGPDVYASWF 59 MQ R ++ CIQ+ND E+ KT N+ D CLE+ CESIF IVSSRLK VGPDVYASWF Sbjct: 1 MQPRGISVCIQKNDDEVPVKTSNMSADTAGCLEIKCESIFKIVSSRLKANVGPDVYASWF 60 Query: 60 QRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSV 119 QRLKFHSV HN+VHLSVPTNFLKAWIKNRYLETITKLFQEE SR+QGVEILVRS AL V Sbjct: 61 QRLKFHSVSHNVVHLSVPTNFLKAWIKNRYLETITKLFQEESSRVQGVEILVRSAALVPV 120 Query: 120 --EKT--ASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 EK+ ++ S TK S I+TN K+ I GKQTI+PV GSPLDSRFVFSTFI+G SNRV Sbjct: 121 PSEKSIFPATSSTTKSSTISTNTGKTIAITGKQTINPVLGSPLDSRFVFSTFIDGPSNRV 180 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 ALTAAQ+IAEVDSHG TTVRLNPLFIHASVGLGKTHLLQ+IANA+IKRQPNLRVVYLTAE Sbjct: 181 ALTAAQNIAEVDSHGCTTVRLNPLFIHASVGLGKTHLLQSIANAAIKRQPNLRVVYLTAE 240 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV 295 YFMWRFASAIRDN ALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV Sbjct: 241 YFMWRFASAIRDNHALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV 300 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 AAADRPPSELESLDPRIRSRLQGGV+VPLG HDY+MR SILKNRLAISQKE+P LNINEE Sbjct: 301 AAADRPPSELESLDPRIRSRLQGGVAVPLGSHDYDMRLSILKNRLAISQKENPTLNINEE 360 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQ 415 VL HVART+TTSGRELDGAFNQLVFRHSF PILT EI +ELLSHLV+TGETKKMRIEDIQ Sbjct: 361 VLTHVARTITTSGRELDGAFNQLVFRHSFEPILTVEIVEELLSHLVSTGETKKMRIEDIQ 420 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 RMVAKHYNISRNDLLSNRR+RTVVRPRQ+AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA Sbjct: 421 RMVAKHYNISRNDLLSNRRIRTVVRPRQIAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 480 Query: 476 VRKVEKMLETDITLKKEVELLKRLISE 502 VRKV K+LETDITLKKEVELLKRLISE Sbjct: 481 VRKVGKLLETDITLKKEVELLKRLISE 507 >gi|222084650|ref|YP_002543179.1| chromosomal replication initiator protein DnaA [Agrobacterium radiobacter K84] gi|221722098|gb|ACM25254.1| chromosomal replication initiator protein DnaA [Agrobacterium radiobacter K84] Length = 516 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 311/495 (62%), Positives = 374/495 (75%), Gaps = 25/495 (5%) Query: 30 CLEVNCES------IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 CLE + +F VS+RLK QVGPDVYASWF RLK HSV ++V L+VPT FLK+ Sbjct: 25 CLEAGEKGEMQHNVLFERVSARLKAQVGPDVYASWFARLKLHSVSKSVVRLTVPTTFLKS 84 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV----ALPSVEKTASSPSITKLSPINTNIS 139 WI NRYL+ IT LFQ E + + VEILVR+ A P ++ P T ++PI + Sbjct: 85 WINNRYLDLITSLFQAEDAEVLKVEILVRTATRHAAKPCADEQVVVPDSTAVAPIRRTTA 144 Query: 140 K--SPIILGKQTI----------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 + I+ + SP+FGSPLDSRF F T++EGSSNRV+L AA++IAE Sbjct: 145 QPAGQIVAHAVSAAAAARPATMGSPLFGSPLDSRFTFDTYVEGSSNRVSLAAAKTIAEA- 203 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 G VR NPLF+H++VGLGKTHLLQAIANA+++ NLRVVYLTAEYFMWRFA+AIRD Sbjct: 204 --GSGAVRFNPLFVHSTVGLGKTHLLQAIANAAVQNPRNLRVVYLTAEYFMWRFATAIRD 261 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 N AL LKDSLRNIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELES Sbjct: 262 NDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELES 321 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 LDPR+RSRLQGGV++ + DYEMR ILK RL ++ EDP L I E+L HVAR VT S Sbjct: 322 LDPRVRSRLQGGVAIEVEAPDYEMRLEILKRRLEAARLEDPSLEIPAELLSHVARNVTAS 381 Query: 368 GRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 GREL+GAFNQL+FR SF P LT E DELL+HLV +GE +++RIEDIQR+VA+HYN+SR Sbjct: 382 GRELEGAFNQLIFRRSFEPNLTVERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVSRQ 441 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 +L+SNRR R +V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D Sbjct: 442 ELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDS 501 Query: 488 TLKKEVELLKRLISE 502 L E+ELLKRLI+E Sbjct: 502 KLSHEIELLKRLINE 516 >gi|86356015|ref|YP_467907.1| chromosomal replication initiation protein [Rhizobium etli CFN 42] gi|86280117|gb|ABC89180.1| chromosomal replication initiator protein [Rhizobium etli CFN 42] Length = 516 Score = 623 bits (1606), Expect = e-176, Method: Compositional matrix adjust. Identities = 311/497 (62%), Positives = 375/497 (75%), Gaps = 26/497 (5%) Query: 25 DVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAW 84 +V + E+ +F VS+RLK QVGPDVYASWF RLK HSV ++V LSVPT FLK+W Sbjct: 27 EVGEAKAEMKQSILFERVSARLKAQVGPDVYASWFARLKLHSVSKSVVRLSVPTTFLKSW 86 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSV-------ALPSVEKTASSPSITKLSP---- 133 I NRYL+ IT LFQ E I +EILVR+ A V+ ++P+ + P Sbjct: 87 INNRYLDLITGLFQAEDPEIMKIEILVRTATRSGMKAADEVVQPEPAAPAQMRRPPSAQP 146 Query: 134 --------INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 ++ + P LG +P+FGSPLDSRF F TF+EGSSNRVAL AA++IAE Sbjct: 147 AGQAVQQAVSAVAAARPASLG----TPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTIAE 202 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 V G VR NPLF+H++VGLGKTHLLQAIANA+++ LRVVYLTAEYFMWRFA+AI Sbjct: 203 V---GSGAVRFNPLFVHSTVGLGKTHLLQAIANAAVQNPRALRVVYLTAEYFMWRFATAI 259 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 RDN AL LKDSLRNIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P EL Sbjct: 260 RDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWEL 319 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ESLDPR+RSRLQGGV++ L DYEMR ILK RLA ++ EDP L I ++L HVAR +T Sbjct: 320 ESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRRLAAARLEDPSLEIPADLLQHVARNIT 379 Query: 366 TSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 SGREL+GAFNQL+FR SF P L+ E DELL+HLV +GE +++RIEDIQR+VA+HYN+S Sbjct: 380 ASGRELEGAFNQLIFRRSFEPNLSIERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVS 439 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 R +L+SNRR R +V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ Sbjct: 440 RQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISG 499 Query: 486 DITLKKEVELLKRLISE 502 D L E+ELLKRLI+E Sbjct: 500 DTKLSHEIELLKRLINE 516 >gi|116250144|ref|YP_765982.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. viciae 3841] gi|123384972|sp|Q1MMD6|DNAA_RHIL3 RecName: Full=Chromosomal replication initiator protein DnaA gi|115254792|emb|CAK05866.1| putative chromosomal replication initiator protein [Rhizobium leguminosarum bv. viciae 3841] Length = 482 Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust. Identities = 311/484 (64%), Positives = 366/484 (75%), Gaps = 26/484 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 +F VS+RLK QVGPDVYASWF RLK HSV ++V LSVPT FLK+WI NRYL+ IT LF Sbjct: 6 LFERVSARLKAQVGPDVYASWFARLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITGLF 65 Query: 98 QEEHSRIQGVEILVRSVALPSV----EKTASSPSI-------TKLSPINTNISKS----- 141 Q E I +E+LVR+ E A P+ T P + ++ Sbjct: 66 QAEDPEILKIEVLVRTATRHGTKALDEVVAPEPAAPTQMRRPTSAQPAGQAVQQAVSAVA 125 Query: 142 ---PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 P G SP+FGSPLDSRF F TF+EGSSNRVAL AA++IAE G VR NP Sbjct: 126 AARPASFG----SPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTIAEA---GQGAVRFNP 178 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIH++VGLGKTHLLQA+ANA+++ +LRVVYLTAEYFMWRFA+AIRDN AL LKDSLR Sbjct: 179 LFIHSTVGLGKTHLLQAVANAAVQNPRSLRVVYLTAEYFMWRFATAIRDNDALTLKDSLR 238 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 NIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRLQG Sbjct: 239 NIDLLIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQG 298 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 GV++ DYEMR ILK RLA+++ EDP L I E+L HVAR VT SGREL+GAFNQL Sbjct: 299 GVAIEFDAPDYEMRLEILKRRLAVARLEDPSLEIPAELLQHVARNVTASGRELEGAFNQL 358 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 VFR SF P L+ E DELL+HLV +GE +++RIEDIQR+VA+HYN+SR +L+SNRR R + Sbjct: 359 VFRRSFEPNLSIERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVI 418 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L EVELLKR Sbjct: 419 VKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDTKLSHEVELLKR 478 Query: 499 LISE 502 LI+E Sbjct: 479 LINE 482 >gi|190890027|ref|YP_001976569.1| chromosomal replication initiator protein [Rhizobium etli CIAT 652] gi|190695306|gb|ACE89391.1| chromosomal replication initiator protein [Rhizobium etli CIAT 652] Length = 516 Score = 618 bits (1594), Expect = e-175, Method: Compositional matrix adjust. Identities = 310/487 (63%), Positives = 367/487 (75%), Gaps = 20/487 (4%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+ +F VS+RLK QVGPDVYASWF RLK HSV ++V LSVPT FLK+WI NRYL+ Sbjct: 34 EMKQSILFERVSARLKAQVGPDVYASWFARLKLHSVSKSVVRLSVPTTFLKSWINNRYLD 93 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTAS---SPSITKLSPINTNISKSPIILGKQ 148 IT LFQ E I +EILVR+ A S K A P + + S P Q Sbjct: 94 LITGLFQAEDPEILKIEILVRT-ATRSGMKAADEVVQPEPAAPAQMRRPASAQPASQAVQ 152 Query: 149 TI-------------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 +P+FGSPLDSRF F TF+EGSSNRVAL AA++IAE G VR Sbjct: 153 QAVSAVAAARPASFGAPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTIAEA---GSGAVR 209 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLF+H++VGLGKTHLLQAIANA+++ LRVVYLTAEYFMWRFA+AIRDN AL LKD Sbjct: 210 FNPLFVHSTVGLGKTHLLQAIANAAVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKD 269 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 SLRNIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSR Sbjct: 270 SLRNIDLLIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSR 329 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 LQGGV++ L DYEMR ILK RLA +++EDP L I ++L HVAR +T SGREL+GAF Sbjct: 330 LQGGVAIELDAPDYEMRLEILKRRLAAARQEDPSLEIPADLLQHVARNITASGRELEGAF 389 Query: 376 NQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 NQL+FR SF P L+ E DELL+HLV +GE +++RIEDIQR+VA+HYN+SR +L+SNRR Sbjct: 390 NQLIFRRSFEPNLSIERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVSRQELVSNRRT 449 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+EL Sbjct: 450 RVIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDTKLSHEIEL 509 Query: 496 LKRLISE 502 LKRLI+E Sbjct: 510 LKRLINE 516 >gi|241202756|ref|YP_002973852.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856646|gb|ACS54313.1| chromosomal replication initiator protein DnaA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 516 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 305/480 (63%), Positives = 361/480 (75%), Gaps = 18/480 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 +F V++RLK QVG DVYASWF RLK HSV ++V LSVPT FLK+WI NRYL+ IT LF Sbjct: 40 LFERVTARLKAQVGQDVYASWFARLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITGLF 99 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI------- 150 Q E I +E+LVR+ + + + +P S G+ Sbjct: 100 QAEDPEILKIEVLVRTATRHGTKALDEAVAPEPAAPTQMRRPASAQPAGQAVQQAVSAVA 159 Query: 151 --------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 SP+FGSPLDSRF F TF+EGSSNRVAL AA++IAE G VR NPLFIH Sbjct: 160 AARPASFGSPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTIAEA---GQGAVRFNPLFIH 216 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 ++VGLGKTHLLQA+ANA+++ LRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDL Sbjct: 217 STVGLGKTHLLQAVANAAVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDL 276 Query: 263 LLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ Sbjct: 277 LIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAI 336 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 DYEMR ILK RLA+++ EDP L I E+L HVAR VT SGREL+GAFNQLVFR Sbjct: 337 EFDAPDYEMRLEILKRRLAVARLEDPSLEIPAELLQHVARNVTASGRELEGAFNQLVFRR 396 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 SF P L+ E DELL+HLV +GE +++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PR Sbjct: 397 SFEPNLSIERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPR 456 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L EVELLKRLI+E Sbjct: 457 QIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDTKLSHEVELLKRLINE 516 >gi|209547613|ref|YP_002279530.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533369|gb|ACI53304.1| chromosomal replication initiator protein DnaA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 516 Score = 615 bits (1585), Expect = e-174, Method: Compositional matrix adjust. Identities = 312/490 (63%), Positives = 372/490 (75%), Gaps = 26/490 (5%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+ +F VS+RLK QVGPDVYASWF RLK HSV ++V LSVPT FLK+WI NRYL+ Sbjct: 34 EMKHSILFERVSARLKAQVGPDVYASWFARLKLHSVSKSVVRLSVPTTFLKSWINNRYLD 93 Query: 92 TITKLFQEEHSRIQGVEILVRS-----------------VALPSVEKTASS-PSITKLSP 133 IT LFQ E I +E+LVR+ V P + AS+ P+ + Sbjct: 94 LITGLFQAEDPEIMKIEVLVRTATRSGTKALDEAVQPEPVVAPQARRPASAQPAGQAVQQ 153 Query: 134 INTNISKS-PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 ++++ + P G SP+FGSPLDSRF F TF+EGSSNRVAL AA++IAE G Sbjct: 154 AVSSVAAARPASFG----SPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTIAEA---GSG 206 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 VR NPLFIH++VGLGKTHLLQAIANA+++ LRVVYLTAEYFMWRFA+AIRDN AL Sbjct: 207 AVRFNPLFIHSTVGLGKTHLLQAIANAAVQNPRALRVVYLTAEYFMWRFATAIRDNDALT 266 Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 LKDSLRNIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+ Sbjct: 267 LKDSLRNIDLLIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRV 326 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 RSRLQGGV++ DYEMR IL+ RLA ++ EDP L+I E+L HVAR VT SGREL+ Sbjct: 327 RSRLQGGVAIEFDAPDYEMRLEILRRRLAAARLEDPSLDIPAELLQHVARNVTASGRELE 386 Query: 373 GAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 GAFNQLVFR SF P L+ E DELL+HLV +GE +++RIEDIQR+VA+HYN+SR +L+SN Sbjct: 387 GAFNQLVFRRSFEPNLSIERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVSRQELVSN 446 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR R +V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E Sbjct: 447 RRTRVIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDTKLSHE 506 Query: 493 VELLKRLISE 502 VELLKRLI+E Sbjct: 507 VELLKRLINE 516 >gi|222147316|ref|YP_002548273.1| chromosomal replication initiation protein [Agrobacterium vitis S4] gi|221734306|gb|ACM35269.1| chromosomal replication initiator protein DnaA [Agrobacterium vitis S4] Length = 524 Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust. Identities = 303/505 (60%), Positives = 373/505 (73%), Gaps = 28/505 (5%) Query: 18 AEKTPNVDVDKRCL--EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS 75 A PN VD EV +++F S+RL+ QVGPDV+ASWF RLK HS +++ LS Sbjct: 28 ATGGPNAVVDDTVAGDEVRYDALFERFSARLRAQVGPDVFASWFGRLKLHSSSKSVIRLS 87 Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKL 131 VPT FLK+WI NRYL+ IT +FQ E + I +EILVRS + P VE A PS++ Sbjct: 88 VPTTFLKSWINNRYLDLITSIFQAEDASILKIEILVRSASRNSRAPVVEDRAVEPSLS-- 145 Query: 132 SPINTNISKSPIILGKQTI--------------SPVFGSPLDSRFVFSTFIEGSSNRVAL 177 ++ ++P +G+ P+FGSPLDSR+ F F+EG+SNRVA+ Sbjct: 146 ---SSQKRQAPQSIGQMAPAIANAAAPQRAPVQGPLFGSPLDSRYTFDGFVEGASNRVAV 202 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AA++IAE G VR NPLFIH+SVGLGKTHLLQAIANA+I RVVYLTAEYF Sbjct: 203 AAAKTIAEA---GAGAVRFNPLFIHSSVGLGKTHLLQAIANAAIHSPRAPRVVYLTAEYF 259 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAA 297 MWRFA+AIRDN AL LKDSLRNIDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV A Sbjct: 260 MWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKTIQHEFCHLLNMLLDSAKQVVVA 319 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 ADR P ELESLD R+RSRLQGGV++ + DY+MR +LK RLA+++KEDP L I E++ Sbjct: 320 ADRAPWELESLDQRVRSRLQGGVAIEMEAPDYDMRLDMLKTRLALAKKEDPSLEIPAEII 379 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 HVAR V +SGR+L+GAFNQL+FR SF +T E DELL+HLV E K++RIEDIQR+ Sbjct: 380 AHVARNVASSGRDLEGAFNQLLFRRSFEANMTIERVDELLAHLVGAAEQKRVRIEDIQRV 439 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVR Sbjct: 440 VARHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVR 499 Query: 478 KVEKMLETDITLKKEVELLKRLISE 502 K+E+++ D L +E+ELL+RLI+E Sbjct: 500 KIEELISGDQKLSQEIELLRRLINE 524 >gi|159184258|ref|NP_353356.2| chromosomal replication initiation protein [Agrobacterium tumefaciens str. C58] gi|159139585|gb|AAK86141.2| chromosomal replication initiator protein DnaA [Agrobacterium tumefaciens str. C58] Length = 520 Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust. Identities = 302/526 (57%), Positives = 377/526 (71%), Gaps = 33/526 (6%) Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCE-------SIFTIVSSRLKNQVGPD 53 MQL + + D + P D C E + ++F S+RLK QVGP+ Sbjct: 1 MQLNLAMGAVADGD-----RAPKA-CDAACSEAAGDKSAMMHDALFERFSARLKAQVGPE 54 Query: 54 VYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 VYASWF RLK H+V ++V +VPT FLK+WI NRY++ IT L Q E + VEILVRS Sbjct: 55 VYASWFARLKLHTVSKSVVRFTVPTTFLKSWINNRYMDLITSLVQSEDPDVLKVEILVRS 114 Query: 114 VALP-----------SVEKTASSPSITKLSPINTNISKSPII------LGKQTISPVFGS 156 + P V++ ++P P + + + L + P+FGS Sbjct: 115 ASRPVRPAQTEERAQPVQEVGAAPRNKSFIPSQSATAPAAQPMAAQATLRQGGSGPLFGS 174 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD+RF F TF+EGSSNRVAL AA++IAE G VR NPLFIHA VGLGKTHLLQAI Sbjct: 175 PLDTRFTFDTFVEGSSNRVALAAAKTIAEA---GAGAVRFNPLFIHAGVGLGKTHLLQAI 231 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 ANA+I N RVVYLTAEYFMWRFA+AIRDN AL LKD+LRNIDLL+IDDMQFLQGK+I Sbjct: 232 ANAAIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDTLRNIDLLVIDDMQFLQGKMI 291 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 QHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRLQGG+++ + DY+MR+ +L Sbjct: 292 QHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGMAIEIEGPDYDMRYEML 351 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 R+ ++++DP I++E+L HVA++VT SGREL+GAFNQL+FR SF P L+ + DEL Sbjct: 352 NRRMGSARQDDPSFEISDEILTHVAKSVTASGRELEGAFNQLMFRRSFEPNLSVDRVDEL 411 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LSHLV +GE K++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYL+K++TPRS Sbjct: 412 LSHLVGSGEAKRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLAKMLTPRS 471 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FPEIGRRFG RDHTTVLHAVRK+E ++ D L EVELLKRLI+E Sbjct: 472 FPEIGRRFGGRDHTTVLHAVRKIEDLISGDTKLGHEVELLKRLINE 517 >gi|38257685|sp|Q8UIH1|DNAA_AGRT5 RecName: Full=Chromosomal replication initiator protein DnaA Length = 487 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 294/484 (60%), Positives = 366/484 (75%), Gaps = 20/484 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++F S+RLK QVGP+VYASWF RLK H+V ++V +VPT FLK+WI NRY++ IT Sbjct: 4 DALFERFSARLKAQVGPEVYASWFARLKLHTVSKSVVRFTVPTTFLKSWINNRYMDLITS 63 Query: 96 LFQEEHSRIQGVEILVRSVALP-----------SVEKTASSPSITKLSPINTNISKSPII 144 L Q E + VEILVRS + P V++ ++P P + + + Sbjct: 64 LVQSEDPDVLKVEILVRSASRPVRPAQTEERAQPVQEVGAAPRNKSFIPSQSATAPAAQP 123 Query: 145 ------LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 L + P+FGSPLD+RF F TF+EGSSNRVAL AA++IAE G VR NP Sbjct: 124 MAAQATLRQGGSGPLFGSPLDTRFTFDTFVEGSSNRVALAAAKTIAEA---GAGAVRFNP 180 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIHA VGLGKTHLLQAIANA+I N RVVYLTAEYFMWRFA+AIRDN AL LKD+LR Sbjct: 181 LFIHAGVGLGKTHLLQAIANAAIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDTLR 240 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 NIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRLQG Sbjct: 241 NIDLLVIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQG 300 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+++ + DY+MR+ +L R+ ++++DP I++E+L HVA++VT SGREL+GAFNQL Sbjct: 301 GMAIEIEGPDYDMRYEMLNRRMGSARQDDPSFEISDEILTHVAKSVTASGRELEGAFNQL 360 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +FR SF P L+ + DELLSHLV +GE K++RIEDIQR+VA+HYN+SR +L+SNRR R + Sbjct: 361 MFRRSFEPNLSVDRVDELLSHLVGSGEAKRVRIEDIQRIVARHYNVSRQELVSNRRTRVI 420 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+PRQ+AMYL+K++TPRSFPEIGRRFG RDHTTVLHAVRK+E ++ D L EVELLKR Sbjct: 421 VKPRQIAMYLAKMLTPRSFPEIGRRFGGRDHTTVLHAVRKIEDLISGDTKLGHEVELLKR 480 Query: 499 LISE 502 LI+E Sbjct: 481 LINE 484 >gi|325291758|ref|YP_004277622.1| chromosomal replication initiation protein [Agrobacterium sp. H13-3] gi|325059611|gb|ADY63302.1| chromosomal replication initiation protein [Agrobacterium sp. H13-3] Length = 487 Score = 604 bits (1558), Expect = e-171, Method: Compositional matrix adjust. Identities = 296/486 (60%), Positives = 367/486 (75%), Gaps = 24/486 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++F S+RLK QVGP+VYASWF RLK H+V ++V +VPT FLK+WI NRY++ IT Sbjct: 4 DALFERFSARLKAQVGPEVYASWFARLKLHTVSKSVVRFTVPTTFLKSWINNRYMDLITS 63 Query: 96 LFQEEHSRIQGVEILVRSVALPS----VEKTASSPSITKLSPINTNISKSP--------- 142 L Q E + VEILVRS + P+ VE+ + + + N S P Sbjct: 64 LVQSEDPDVLKVEILVRSASRPARPAQVEERVQP--VQDMGAVARNKSFIPSQPATAPSA 121 Query: 143 ------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 L + + P+FGSPLD+RF F TF+EGSSNRVAL AA++IAE G VR Sbjct: 122 QPAAAQATLRQGSSGPLFGSPLDTRFTFDTFVEGSSNRVALAAAKTIAEA---GAGAVRF 178 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFIHA VGLGKTHLLQAIANA+I N RVVYLTAEYFMWRFA+AIRDN AL LKD+ Sbjct: 179 NPLFIHAGVGLGKTHLLQAIANAAIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDT 238 Query: 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 LRNIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRL Sbjct: 239 LRNIDLLVIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRL 298 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 QGG+++ + DY+MR+ +L R+ ++++DP I++E+L HVA++VT SGREL+GAFN Sbjct: 299 QGGMAIEIEGPDYDMRYEMLNRRMGSARQDDPSFEISDEILTHVAKSVTASGRELEGAFN 358 Query: 377 QLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 QL+FR SF P L+ + DELLSHLV +GE K++RIEDIQR+VA+HYN+SR +L+SNRR R Sbjct: 359 QLMFRRSFEPNLSVDRVDELLSHLVGSGEAKRVRIEDIQRIVARHYNVSRQELVSNRRTR 418 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V+PRQ+AMYL+K++TPRSFPEIGRRFG RDHTTVLHAVRK+E ++ D L EVELL Sbjct: 419 VIVKPRQIAMYLAKMLTPRSFPEIGRRFGGRDHTTVLHAVRKIEDLISGDTKLGHEVELL 478 Query: 497 KRLISE 502 KRLI+E Sbjct: 479 KRLINE 484 >gi|150395230|ref|YP_001325697.1| chromosomal replication initiation protein [Sinorhizobium medicae WSM419] gi|150026745|gb|ABR58862.1| chromosomal replication initiator protein DnaA [Sinorhizobium medicae WSM419] Length = 481 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 303/487 (62%), Positives = 370/487 (75%), Gaps = 29/487 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYL+ IT Sbjct: 4 DALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITS 63 Query: 96 LFQEEHSRIQGVEILVRS--------------------VALPSVEKTASSPSITKLSPIN 135 L Q+E S I VEILVR+ V + SV ++A+SPS+ + Sbjct: 64 LVQQEDSEILKVEILVRTATRGHRPAAPEETVSAAVETVPVASVRRSATSPSVAISA--- 120 Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + ++ +P + +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR Sbjct: 121 STVAAAP---ARPHQTPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEA---GAGAVR 174 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLFIH+SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+ Sbjct: 175 FNPLFIHSSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKE 234 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 SLRNIDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSR Sbjct: 235 SLRNIDLLIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSR 294 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 LQGGV++ + DYEMR +LK RL ++++D L I E+L HVAR VT SGREL+GAF Sbjct: 295 LQGGVAIEMEGPDYEMRLEMLKRRLEAARQDDATLEIPLEILSHVARNVTASGRELEGAF 354 Query: 376 NQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 NQL+FR SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR Sbjct: 355 NQLLFRRSFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRVVAKHYNVSRQELVSNRRT 414 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+EL Sbjct: 415 RVIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDTKLSHEIEL 474 Query: 496 LKRLISE 502 LKRLI+E Sbjct: 475 LKRLINE 481 >gi|227820588|ref|YP_002824558.1| chromosomal replication initiation protein [Sinorhizobium fredii NGR234] gi|227339587|gb|ACP23805.1| chromosomal replication initiator protein DnaA [Sinorhizobium fredii NGR234] Length = 480 Score = 575 bits (1483), Expect = e-162, Method: Compositional matrix adjust. Identities = 297/480 (61%), Positives = 360/480 (75%), Gaps = 16/480 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYLE IT Sbjct: 4 DALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLELITS 63 Query: 96 LFQEEHSRIQGVEILVRSVA-------------LPSVEKTASSPSITKLSPINTNISKSP 142 LFQ+E I VEILVR+ + A+ + + Sbjct: 64 LFQQEDGEILKVEILVRTATRGQRPAVHEEAVAAAAEPAAAAPVRRAASPQPVAAAAATV 123 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 K +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR NPLFIH Sbjct: 124 AASAKPVQAPLFGSPLDQRYNFESFVEGSSNRVALAAARTIAEA---GAGAVRFNPLFIH 180 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 +SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+SLRNIDL Sbjct: 181 SSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDL 240 Query: 263 LLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQGGV++ Sbjct: 241 LVIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAI 300 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + DY+MR +LK RL ++++D L+I +E+L HVAR+VT SGREL+GAFNQL+FR Sbjct: 301 EMEGPDYDMRLEMLKRRLDTARQDDTSLDIPQEILSHVARSVTASGRELEGAFNQLLFRR 360 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR R +V+PR Sbjct: 361 SFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRIVAKHYNVSRQELVSNRRTRVIVKPR 420 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKRLI+E Sbjct: 421 QIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDTKLSHEIELLKRLINE 480 >gi|15964121|ref|NP_384474.1| chromosomal replication initiation protein [Sinorhizobium meliloti 1021] gi|307301266|ref|ZP_07581028.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti BL225C] gi|307317937|ref|ZP_07597374.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti AK83] gi|15073297|emb|CAC41805.1| Chromosomal replication initiator [Sinorhizobium meliloti 1021] gi|306896339|gb|EFN27088.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti AK83] gi|306903722|gb|EFN34309.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti BL225C] Length = 507 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 298/484 (61%), Positives = 364/484 (75%), Gaps = 16/484 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYL+ Sbjct: 27 DMRHDALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLD 86 Query: 92 TITKLFQEEHSRIQGVEILVRSVAL---PSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 IT L Q+E S I VEILVR+ P+ + + + + + S +P + Sbjct: 87 LITTLVQQEDSEILKVEILVRTATRGHRPTAPEESVAAAAEAAVVPPSRRSAAPTVAIAA 146 Query: 149 TI----------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR NP Sbjct: 147 AAVAAAPARPVQAPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEA---GAGAVRFNP 203 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIH+SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+SLR Sbjct: 204 LFIHSSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLR 263 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 NIDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQG Sbjct: 264 NIDLLIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQG 323 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 GV++ + DYEMR +LK RL ++++D L I E+L HVAR VT SGREL+GAFNQL Sbjct: 324 GVAIEMEGPDYEMRLEMLKRRLEAARQDDASLEIPLEILSHVARNVTASGRELEGAFNQL 383 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +FR SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR R + Sbjct: 384 LFRRSFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRVVAKHYNVSRQELVSNRRTRVI 443 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKR Sbjct: 444 VKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISADTKLSHEIELLKR 503 Query: 499 LISE 502 LI+E Sbjct: 504 LINE 507 >gi|163757767|ref|ZP_02164856.1| chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] gi|162285269|gb|EDQ35551.1| chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] Length = 485 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 287/482 (59%), Positives = 359/482 (74%), Gaps = 20/482 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 +F V +RLK QVG +++ SWF RLK S ++V LSVPT FLK+WI N+YL+ I+ L+ Sbjct: 7 VFERVMARLKAQVGQEIFTSWFGRLKLQSASKSVVRLSVPTAFLKSWINNKYLDQISALY 66 Query: 98 QEEHSRIQGVEILVRSV----ALPSVEKTASSPSITKLSPINTNISKSPIIL-------- 145 +EE + +EI+VRS A+ S AS P+ ++ +P + K + Sbjct: 67 REEAPDVLKIEIVVRSATRSTAVSSAPDAASLPNASQATPGASASRKEQHVTVKGAGAKF 126 Query: 146 -----GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 G Q + V GSPLD + F +++EGSSNRVAL AA++IAE G VR NPLF Sbjct: 127 GAFNKGPQAANAVIGSPLDPQCTFDSYVEGSSNRVALAAARTIAEA---GTGAVRFNPLF 183 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 IH++VGLGKTHLLQAIA A+ N RVVYLTAEYFMWRFA+AIRDN AL+ K+SLRNI Sbjct: 184 IHSNVGLGKTHLLQAIAAAASSHSRNPRVVYLTAEYFMWRFATAIRDNDALSFKESLRNI 243 Query: 261 DLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 DLL+IDDMQFLQGK IQHEFCHLLN LLDSA+QVV AADR P ELESLDPR+RSRLQGGV Sbjct: 244 DLLVIDDMQFLQGKSIQHEFCHLLNMLLDSARQVVVAADRAPWELESLDPRVRSRLQGGV 303 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 ++ + DYEMR IL+ RLAI+Q ED L+I+E +L HVA+ +T+SGREL+GAFNQL+F Sbjct: 304 AIEIEAPDYEMRLEILRKRLAIAQMEDATLDIDETILAHVAQNITSSGRELEGAFNQLLF 363 Query: 381 RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 R SF P L+ E DELL HLVN GE K++RIEDIQR+V++HYN++R +L+S+RR R +V+ Sbjct: 364 RRSFEPNLSIERVDELLGHLVNAGEPKRVRIEDIQRVVSRHYNVTRQELVSDRRTRVIVK 423 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL+K MTPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKRLI Sbjct: 424 PRQIAMYLAKTMTPRSFPEIGRRFGGRDHTTVLHAVRKIEELINGDTKLGHEIELLKRLI 483 Query: 501 SE 502 E Sbjct: 484 IE 485 >gi|438884|gb|AAA26258.1| dnaA [Sinorhizobium meliloti] gi|755069|gb|AAA91097.1| dnaA [Sinorhizobium meliloti] Length = 507 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 298/484 (61%), Positives = 364/484 (75%), Gaps = 16/484 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYL+ Sbjct: 27 DMRHDALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLD 86 Query: 92 TITKLFQEEHSRIQGVEILVRSVAL---PSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 IT L Q+E S I VEILVR+ P+ + + + + + S +P + Sbjct: 87 LITTLVQQEDSEILKVEILVRTATRGHRPTAPEESVAAAAEAAVVPPSRRSAAPTVAIAA 146 Query: 149 TI----------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR NP Sbjct: 147 AAVAAAPARPVQAPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEA---GAGAVRFNP 203 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIH+SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+SLR Sbjct: 204 LFIHSSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLR 263 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 NIDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQG Sbjct: 264 NIDLLIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQG 323 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 GV++ + DYEMR +LK RL ++++D L I E+L HVAR VT SGREL+GAFNQL Sbjct: 324 GVAIEMEGPDYEMRLEMLKRRLEAARQDDASLEIPLEILSHVARNVTASGRELEGAFNQL 383 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +FR SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR R + Sbjct: 384 LFRRSFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRVVAKHYNVSRQELVSNRRTRVI 443 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKR Sbjct: 444 VKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISADTKLSHEIELLKR 503 Query: 499 LISE 502 LI+E Sbjct: 504 LINE 507 >gi|14195656|sp|P35890|DNAA_RHIME RecName: Full=Chromosomal replication initiator protein DnaA Length = 480 Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust. Identities = 298/480 (62%), Positives = 362/480 (75%), Gaps = 16/480 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYL+ IT Sbjct: 4 DALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITT 63 Query: 96 LFQEEHSRIQGVEILVRSVAL---PSVEKTASSPSITKLSPINTNISKSPIILGKQTI-- 150 L Q+E S I VEILVR+ P+ + + + + + S +P + Sbjct: 64 LVQQEDSEILKVEILVRTATRGHRPTAPEESVAAAAEAAVVPPSRRSAAPTVAIAAAAVA 123 Query: 151 --------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR NPLFIH Sbjct: 124 AAPARPVQAPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEA---GAGAVRFNPLFIH 180 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 +SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+SLRNIDL Sbjct: 181 SSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRNIDL 240 Query: 263 LLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQGGV++ Sbjct: 241 LIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGGVAI 300 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + DYEMR +LK RL ++++D L I E+L HVAR VT SGREL+GAFNQL+FR Sbjct: 301 EMEGPDYEMRLEMLKRRLEAARQDDASLEIPLEILSHVARNVTASGRELEGAFNQLLFRR 360 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR R +V+PR Sbjct: 361 SFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRVVAKHYNVSRQELVSNRRTRVIVKPR 420 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKRLI+E Sbjct: 421 QIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISADTKLSHEIELLKRLINE 480 >gi|254694807|ref|ZP_05156635.1| chromosomal replication initiation protein [Brucella abortus bv. 3 str. Tulya] Length = 540 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 287/503 (57%), Positives = 365/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P+ + + P++T + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 161 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 217 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+ +RQ RVVYLTAEYFMW Sbjct: 218 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAAFQRQEKARVVYLTAEYFMW 274 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 275 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 334 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 335 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 394 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 395 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 454 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 455 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 514 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 515 EDLVGADTKLAQELELLKRLIND 537 >gi|261215132|ref|ZP_05929413.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 3 str. Tulya] gi|260916739|gb|EEX83600.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 3 str. Tulya] Length = 494 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 285/491 (58%), Positives = 359/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 7 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 66 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 67 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 123 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE G Sbjct: 124 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GS 180 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+ +RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 181 SAVRFNPLFIHASVGLGKTHLLQAIAAAAFQRQEKARVVYLTAEYFMWRFATAIRDNNAL 240 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 241 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 300 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 301 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 360 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 361 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 420 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 421 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 480 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 481 ELELLKRLIND 491 >gi|110632363|ref|YP_672571.1| chromosomal replication initiation protein [Mesorhizobium sp. BNC1] gi|110283347|gb|ABG61406.1| chromosomal replication initiator protein DnaA [Chelativorans sp. BNC1] Length = 479 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 282/479 (58%), Positives = 357/479 (74%), Gaps = 16/479 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++F V ++LK ++G +VY+SWF R+K +V +SVPT FL+AWI YL+ IT L Sbjct: 2 AVFERVRAQLKARLGTEVYSSWFGRMKLAETSKGVVRISVPTAFLRAWINGHYLDLITSL 61 Query: 97 FQEEHSRIQGVEILVRSVAL---------PSVEKTASSPSITKLSPINTN---ISKSPII 144 ++ E VEI+VR+ P + AS L+ + N ++ P Sbjct: 62 WKAEDPSTLKVEIVVRTATRTSPVKADVKPVPARKASGQPQQALASVGVNGARVTPLPTA 121 Query: 145 LGKQTISP-VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 Q + P +FGSPLDSRF F +FIEG+SNRVA AA+++AE+ + +R NPLFIHA Sbjct: 122 KADQAMRPSMFGSPLDSRFTFESFIEGASNRVAYAAARTVAELAAGA---IRFNPLFIHA 178 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 SVGLGKTHLLQA+A AS+KR+P RVVYLTAEYFMWRFA+AIRDN AL LK+ LR+IDLL Sbjct: 179 SVGLGKTHLLQAVAAASLKRRPQSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLL 238 Query: 264 LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +IDDMQFLQGK IQ+EFCHLLN LLDSA+QVV AADRP SELESL+PR++SRL GGVS+ Sbjct: 239 IIDDMQFLQGKSIQNEFCHLLNMLLDSARQVVVAADRPVSELESLEPRVKSRLNGGVSLE 298 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + DY++R ++LK RLA ++ EDP L+I EVL HVA+ VT SGREL+GAFNQLVFRHS Sbjct: 299 MLTPDYDLRLAMLKQRLACARVEDPSLDIPLEVLEHVAQVVTGSGRELEGAFNQLVFRHS 358 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 F P +T E DE+L + TGE +++RIEDIQR+VA+HYN+S+ +LLSNRR R++V+PRQ Sbjct: 359 FEPQITLERIDEILGPVCRTGEPRRVRIEDIQRIVARHYNVSKTELLSNRRTRSIVKPRQ 418 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 VAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E M D L +E+ELLKRLIS+ Sbjct: 419 VAMYLAKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIEGMSGDDKQLAQEIELLKRLISD 477 >gi|163867415|ref|YP_001608612.1| chromosomal replication initiation protein [Bartonella tribocorum CIP 105476] gi|161017059|emb|CAK00617.1| chromosomal replication initiator protein DnaA [Bartonella tribocorum CIP 105476] Length = 523 Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust. Identities = 285/476 (59%), Positives = 362/476 (76%), Gaps = 10/476 (2%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF R+K H +V LSVPT FL++WI N Y Sbjct: 50 EEESAAAFIRVMAQLKAQVGVEAYTSWFGRVKLAEYSHTLVKLSVPTAFLRSWINNHYGS 109 Query: 92 TITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILG-K 147 +T L+++E+S I VE++VR V+ V KT S+PSI ++ +S K Sbjct: 110 LLTHLWKQENSAILRVEVIVRGMERVSRDVVCKT-SAPSIVLEEQATSSFVESCAEHSVK 168 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY-TTVRLNPLFIHASVG 206 + + VFGSPLDSR+ F +F+EG+SNRVAL AA+SIAE G+ + +R NPLFIHASVG Sbjct: 169 SSQAGVFGSPLDSRYTFESFVEGASNRVALAAARSIAE----GHKSALRFNPLFIHASVG 224 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLLQAIA +++KR + RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+ID Sbjct: 225 LGKTHLLQAIAASALKRLTSARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIID 284 Query: 267 DMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 DMQFLQGK IQHEFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQGGVS+ + Sbjct: 285 DMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVSLEIEA 344 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYEMR +L+ RL ++Q++D ++I+++VL ++A+TV SGR+++GAFNQL+FR SF Sbjct: 345 PDYEMRLQMLRQRLKVAQQDDGMISISDDVLEYIAKTVLGSGRDIEGAFNQLLFRQSFES 404 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 L+ E DELL HL GE K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQVAM Sbjct: 405 NLSLERIDELLGHLTRPGEPKRIRIEEIQRTVARHYNVSKQDLLSNRRTRTVVKPRQVAM 464 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 465 YLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCGDQTLAKELELLKRLIGE 520 >gi|319405028|emb|CBI78638.1| chromosomal replication initiator protein DnaA [Bartonella sp. AR 15-3] Length = 521 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 280/472 (59%), Positives = 356/472 (75%), Gaps = 14/472 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 F V ++LK +G + Y SWF RLK N+V LSVPT FL++WI N Y +T L+Q Sbjct: 53 FARVMAQLKANIGVEAYTSWFGRLKLAEYNRNLVKLSVPTAFLRSWINNHYSALLTTLWQ 112 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASS--------PSITKLSPINTNISKSPIILGKQTI 150 +E+S I VE++VRS+ S + S P SP+ + ++ + K T Sbjct: 113 QENSAILRVEVIVRSMERVSKDPVCRSNKSSVVIVPEEQSFSPLVDSYAEQSM---KNTQ 169 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + VFGSPLDSR+ F F+EG+SNRVAL AA+SIAE H +++R NPLFI+ASVGLGKT Sbjct: 170 AGVFGSPLDSRYTFENFVEGASNRVALAAARSIAE--GHK-SSLRFNPLFIYASVGLGKT 226 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLLQAIA ++KR + RV+YLTAEYFMWRFA AIRDN AL+ K+ LR+IDLL+IDDMQF Sbjct: 227 HLLQAIAAGALKRLTSARVIYLTAEYFMWRFAMAIRDNDALSFKEQLRDIDLLIIDDMQF 286 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQGK IQ EFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RSRLQGGV++ + DYE Sbjct: 287 LQGKSIQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIETPDYE 346 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 MR +L+ RL I+Q++D + I++E+L ++A+TV SGR+++GAFNQL+FR SF L+ Sbjct: 347 MRLEMLRQRLKIAQQDDNMVMISDEILAYIAKTVLGSGRDIEGAFNQLLFRQSFEIDLSL 406 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E DELLSHL +GE+K++RIE+IQR VA+HYN+SR DLLSNRR RT+V+PRQVAMYL+K Sbjct: 407 ERIDELLSHLTRSGESKRIRIEEIQRTVARHYNVSRQDLLSNRRTRTIVKPRQVAMYLAK 466 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 ++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 467 VLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 518 >gi|240849789|ref|YP_002971177.1| chromosomal replication initiator protein DnaA [Bartonella grahamii as4aup] gi|240266912|gb|ACS50500.1| chromosomal replication initiator protein DnaA [Bartonella grahamii as4aup] Length = 523 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 280/485 (57%), Positives = 362/485 (74%), Gaps = 28/485 (5%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF R+K H +V LSVPT FL++WI N Y Sbjct: 50 EEESAAAFIRVMAQLKVQVGVEAYTSWFGRVKLAEYSHTLVKLSVPTAFLRSWINNHYGS 109 Query: 92 TITKLFQEEHSRIQGVEILVRSV-----------ALPSV--EKTASSPSITKLSPINTNI 138 +T L+++E+S I VE++VR + ++PSV E+ A+S + + + Sbjct: 110 LLTHLWKQENSAILRVEVIVRGMERVSRDVVCKRSVPSVVLEEQATSSFVESCAEHSV-- 167 Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY-TTVRLN 197 K + + VFGSPLDSR+ F +F+EG+SNRVAL AA+SIAE G+ + +R N Sbjct: 168 --------KNSQTGVFGSPLDSRYTFESFVEGASNRVALAAARSIAE----GHKSALRFN 215 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFIHASVGLGKTHLLQAIA +++KR + RV+YLTAEYFMWRFA+AIRDN AL+ K+ L Sbjct: 216 PLFIHASVGLGKTHLLQAIAASALKRLTSARVIYLTAEYFMWRFATAIRDNDALSFKEQL 275 Query: 258 RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 R+IDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQ Sbjct: 276 RDIDLLIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQ 335 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 GGV++ + DYEMR +L+ RL ++Q++D ++I++++L ++A+TV SGR+++GAFNQ Sbjct: 336 GGVALEIEAPDYEMRLQMLRQRLKVAQQDDGMVSISDDILEYIAKTVLGSGRDIEGAFNQ 395 Query: 378 LVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 L+FR SF L+ E DELL HL GE K++RIE+IQR VA+HYN+S+ DLLSNRR RT Sbjct: 396 LLFRQSFESDLSLERIDELLGHLTRPGEPKRIRIEEIQRTVARHYNVSKQDLLSNRRTRT 455 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+PRQVAMYL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLK Sbjct: 456 VVKPRQVAMYLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCGDQTLAKELELLK 515 Query: 498 RLISE 502 RLI E Sbjct: 516 RLIGE 520 >gi|153007348|ref|YP_001368563.1| chromosomal replication initiation protein [Ochrobactrum anthropi ATCC 49188] gi|151559236|gb|ABS12734.1| chromosomal replication initiator protein DnaA [Ochrobactrum anthropi ATCC 49188] Length = 520 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 287/481 (59%), Positives = 368/481 (76%), Gaps = 17/481 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + +F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 40 DEVFERLTAKLKARVGTEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 99 Query: 96 LFQEEHSRIQGVEILVRSV-----------ALPSVE-KTASSPSITKLSPINTNIS--KS 141 L+QEE+ +I VE++VR V A +VE K A +P + P+ ++ + Sbjct: 100 LWQEENPQILKVEVVVRGVSRVVRSAAPVEACEAVETKPAVAPREKMVFPVGQSLGEKRG 159 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 ++ + V GSPLD R+ F +F++G+SNRVAL AA++IAE G + VR NPLFI Sbjct: 160 SAVVAESASGSVLGSPLDPRYTFDSFVDGASNRVALAAARTIAEA---GSSAVRFNPLFI 216 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 HASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL+ K+ LR+ID Sbjct: 217 HASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRDID 276 Query: 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R+RSRLQGGV+ Sbjct: 277 LLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVA 336 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + DY+MR +L+ RLA++Q ED LNI EE+L HVARTVT SGREL+GAFNQL+FR Sbjct: 337 LEVAAPDYDMRVEMLRRRLAVAQAEDSSLNIGEEILSHVARTVTGSGRELEGAFNQLLFR 396 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLSNRR RT+V+P Sbjct: 397 QSFEPNISIDRVDELLGHLTRVGEPKRIRIEEIQRIVARHYNVSKQDLLSNRRTRTIVKP 456 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L +E+ELLKRLI+ Sbjct: 457 RQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQELELLKRLIN 516 Query: 502 E 502 + Sbjct: 517 D 517 >gi|306843603|ref|ZP_07476204.1| chromosomal replication initiator protein DnaA [Brucella sp. BO1] gi|306276294|gb|EFM57994.1| chromosomal replication initiator protein DnaA [Brucella sp. BO1] Length = 546 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 289/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALP--SVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P + E + P+IT + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCENAEAKPAITPREKMV 166 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 167 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 223 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 224 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 280 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 281 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 340 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 341 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 400 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 401 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 460 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 461 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 520 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 521 EDLVGADTKLAQELELLKRLIND 543 >gi|260461961|ref|ZP_05810206.1| chromosomal replication initiator protein DnaA [Mesorhizobium opportunistum WSM2075] gi|259032208|gb|EEW33474.1| chromosomal replication initiator protein DnaA [Mesorhizobium opportunistum WSM2075] Length = 490 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 278/491 (56%), Positives = 359/491 (73%), Gaps = 30/491 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + E F V ++LK ++G +VY+SWF R+K IV +SVPT FL++WI YL+ I Sbjct: 6 DAEQKFDRVKAQLKARLGAEVYSSWFGRMKVAEASKGIVRISVPTAFLRSWINGHYLDLI 65 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP- 152 ++L+++E + + +EI+VR+ + S + +L+P+ ++ L T+SP Sbjct: 66 SELWKQEDADLLKIEIIVRTAT-----RQGRSHAEPELAPVRKMTRQTQTALAAGTVSPG 120 Query: 153 ---------------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 V GSPLD R+ F +FIEG SNRVA AA+++AE S Sbjct: 121 RIERSPVPRPGAAIESEFRHNVLGSPLDPRYTFGSFIEGPSNRVAFAAAKAVAESQS--- 177 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLF+HA+VGLGKTHLLQAIA S+K+ P RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 178 SAVRFNPLFLHATVGLGKTHLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNAL 237 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 LK+ LR+IDLL+IDDMQFLQGK IQHEFCHL+N LLDSAKQVV AADRPPSELESL+PR Sbjct: 238 TLKEQLRDIDLLIIDDMQFLQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPR 297 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRL GGV++ + D+ MR +LK RLA ++ +D L+I+EE+L HVARTVT SGREL Sbjct: 298 VRSRLNGGVALEMSAPDFAMRLGMLKLRLATARVDDASLDISEEILNHVARTVTGSGREL 357 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P +T + DE+L H+ TGE K++RIEDIQR+VA+HYN+S+ +LLS Sbjct: 358 EGAFNQLLFRQSFEPQITIDRIDEILGHIYRTGEPKRVRIEDIQRIVARHYNVSKTELLS 417 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYLSK+MTPRS PEIGRRFG RDHTTVLHAVRK+E + D TL + Sbjct: 418 NRRTRTIVKPRQVAMYLSKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLSGNDNTLAQ 477 Query: 492 EVELLKRLISE 502 E+ELL+RLI++ Sbjct: 478 ELELLRRLIND 488 >gi|306839965|ref|ZP_07472759.1| chromosomal replication initiator protein DnaA [Brucella sp. NF 2653] gi|306404929|gb|EFM61214.1| chromosomal replication initiator protein DnaA [Brucella sp. NF 2653] Length = 546 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 286/503 (56%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRI--------QGVEILVRSVALPSVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I ++ + + E + P+IT + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRNAAPAETCENAEAKPAITPREKMV 166 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 167 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 223 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 224 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 280 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 281 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 340 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 341 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 400 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 401 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 460 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 461 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 520 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 521 EDLVGADTKLAQELELLKRLIND 543 >gi|239830847|ref|ZP_04679176.1| chromosomal replication initiator protein DnaA [Ochrobactrum intermedium LMG 3301] gi|239823114|gb|EEQ94682.1| chromosomal replication initiator protein DnaA [Ochrobactrum intermedium LMG 3301] Length = 534 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 283/500 (56%), Positives = 365/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK +E++ + +F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 35 DKSLVELSGNAGDEVFERLTAKLKARVGTEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 94 Query: 84 WIKNRYLETITKLFQEEHSRI--------QGVEILVRSVALPSVEKTASSPSITK----L 131 WI N Y E +T+L+QEE+ +I ++ + + + E + + P + + Sbjct: 95 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPVEACEASENKPVVAPREKMV 154 Query: 132 SPINTNISKSPI---------ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 P+ + P+ V GSPLD R+ F +F++G+SNRVAL AA++ Sbjct: 155 FPLGQSFGGQPVGDKRGSAVVAESAAASGAVLGSPLDPRYTFDSFVDGASNRVALAAART 214 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 215 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 271 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 272 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 331 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q EDP L I EE+L HVAR Sbjct: 332 SELESLDVRVRSRLQGGVALEVAAPDYEMRVEMLRRRLAAAQAEDPSLTIGEEILSHVAR 391 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 392 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRVGEPKRIRIEEIQRIVARHY 451 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 452 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 511 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 512 VGADTKLAQELELLKRLIND 531 >gi|306842704|ref|ZP_07475347.1| chromosomal replication initiator protein DnaA [Brucella sp. BO2] gi|306287150|gb|EFM58652.1| chromosomal replication initiator protein DnaA [Brucella sp. BO2] Length = 540 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 289/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P+ E + P+IT + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCENAEAKPAITPREKMV 160 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 161 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 217 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 218 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 274 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 275 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 334 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 335 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 394 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 395 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 454 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 455 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 514 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 515 EDLVGADTKLAQELELLKRLIND 537 >gi|254718225|ref|ZP_05180036.1| chromosomal replication initiation protein [Brucella sp. 83/13] Length = 540 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 286/503 (56%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRI--------QGVEILVRSVALPSVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I ++ + + E + P+IT + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRNAAPAETCENAEAKPAITPREKMV 160 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 161 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 217 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 218 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 274 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 275 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 334 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 335 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 394 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 395 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 454 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 455 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 514 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 515 EDLVGADTKLAQELELLKRLIND 537 >gi|189023269|ref|YP_001934037.1| chromosomal replication initiation protein [Brucella abortus S19] gi|225851547|ref|YP_002731780.1| chromosomal replication initiation protein [Brucella melitensis ATCC 23457] gi|297247409|ref|ZP_06931127.1| chromosomal replication initiator protein DnaA [Brucella abortus bv. 5 str. B3196] gi|189018841|gb|ACD71563.1| chromosomal replication initiation protein [Brucella abortus S19] gi|225639912|gb|ACN99825.1| chromosomal replication initiator protein DnaA [Brucella melitensis ATCC 23457] gi|297174578|gb|EFH33925.1| chromosomal replication initiator protein DnaA [Brucella abortus bv. 5 str. B3196] Length = 546 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 287/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P+ + + P++T + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 166 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 167 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 223 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 224 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 280 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 281 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 340 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 341 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 400 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 401 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 460 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 461 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 520 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 521 EDLVGADTKLAQELELLKRLIND 543 >gi|163842278|ref|YP_001626682.1| chromosomal replication initiation protein [Brucella suis ATCC 23445] gi|163673001|gb|ABY37112.1| chromosomal replication initiator protein DnaA [Brucella suis ATCC 23445] Length = 546 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 287/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P+ + + P++T + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 166 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 167 FPVGQS---FGGQSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAA 223 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 224 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 280 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 281 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 340 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 341 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 400 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 401 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 460 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 461 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 520 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 521 EDLVGADTKLAQELELLKRLIND 543 >gi|161617992|ref|YP_001591879.1| chromosomal replication initiation protein [Brucella canis ATCC 23365] gi|161334803|gb|ABX61108.1| chromosomal replication initiator protein DnaA [Brucella canis ATCC 23365] Length = 546 Score = 551 bits (1421), Expect = e-155, Method: Compositional matrix adjust. Identities = 287/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALP--SVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P + + + P++T + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 166 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 167 FPVGQS---FGGQSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAA 223 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 224 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 280 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 281 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 340 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 341 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 400 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 401 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 460 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 461 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 520 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 521 EDLVGADTKLAQELELLKRLIND 543 >gi|260563084|ref|ZP_05833570.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. 16M] gi|260153100|gb|EEW88192.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. 16M] Length = 529 Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust. Identities = 287/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 30 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 89 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALP--SVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P + + + P++T + Sbjct: 90 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 149 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 150 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 206 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 207 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 263 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 264 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 323 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 324 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 383 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 384 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 443 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 444 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 503 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 504 EDLVGADTKLAQELELLKRLIND 526 >gi|254705186|ref|ZP_05167014.1| chromosomal replication initiation protein [Brucella suis bv. 3 str. 686] Length = 540 Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust. Identities = 287/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALP--SVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P + + + P++T + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 161 FPVGQS---FGGQSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAA 217 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 218 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 274 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 275 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 334 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 335 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 394 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 395 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 454 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 455 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 514 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 515 EDLVGADTKLAQELELLKRLIND 537 >gi|254690318|ref|ZP_05153572.1| chromosomal replication initiation protein [Brucella abortus bv. 6 str. 870] gi|254696435|ref|ZP_05158263.1| chromosomal replication initiation protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700819|ref|ZP_05162647.1| chromosomal replication initiation protein [Brucella suis bv. 5 str. 513] gi|254707298|ref|ZP_05169126.1| chromosomal replication initiation protein [Brucella pinnipedialis M163/99/10] gi|254709163|ref|ZP_05170974.1| chromosomal replication initiation protein [Brucella pinnipedialis B2/94] gi|256030687|ref|ZP_05444301.1| chromosomal replication initiation protein [Brucella pinnipedialis M292/94/1] gi|256045791|ref|ZP_05448669.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060146|ref|ZP_05450328.1| chromosomal replication initiation protein [Brucella neotomae 5K33] gi|256112510|ref|ZP_05453431.1| chromosomal replication initiation protein [Brucella melitensis bv. 3 str. Ether] gi|256258572|ref|ZP_05464108.1| chromosomal replication initiation protein [Brucella abortus bv. 9 str. C68] Length = 540 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 287/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALP--SVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P + + + P++T + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 161 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 217 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 218 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 274 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 275 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 334 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 335 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 394 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 395 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 454 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 455 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 514 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 515 EDLVGADTKLAQELELLKRLIND 537 >gi|17988226|ref|NP_540860.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. 16M] gi|260546286|ref|ZP_05822026.1| chromosomal replication initiation protein [Brucella abortus NCTC 8038] gi|265999709|ref|ZP_05467476.2| chromosomal replication initiation protein [Brucella melitensis bv. 2 str. 63/9] gi|17983991|gb|AAL53124.1| chromosomal replication initiator protein dnaa [Brucella melitensis bv. 1 str. 16M] gi|260096393|gb|EEW80269.1| chromosomal replication initiation protein [Brucella abortus NCTC 8038] gi|263095429|gb|EEZ19030.1| chromosomal replication initiation protein [Brucella melitensis bv. 2 str. 63/9] gi|326408012|gb|ADZ65077.1| chromosomal replication initiation protein [Brucella melitensis M28] gi|326537730|gb|ADZ85945.1| chromosomal replication initiator protein DnaA [Brucella melitensis M5-90] Length = 527 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 287/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 28 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 87 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALP--SVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P + + + P++T + Sbjct: 88 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 147 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 148 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 204 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 205 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 261 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 262 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 321 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 322 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 381 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 382 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 441 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 442 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 501 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 502 EDLVGADTKLAQELELLKRLIND 524 >gi|265983181|ref|ZP_06095916.1| chromosomal replication initiator protein dnaA [Brucella sp. 83/13] gi|264661773|gb|EEZ32034.1| chromosomal replication initiator protein dnaA [Brucella sp. 83/13] Length = 494 Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust. Identities = 284/491 (57%), Positives = 360/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 7 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 66 Query: 96 LFQEEHSRI--------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I ++ + + E + P+IT + + +S G Sbjct: 67 LWQEENPQILKVEVVVRGVSRVVRNAAPAETCENAEAKPAITPREKMVFPVGQS---FGG 123 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE G Sbjct: 124 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GS 180 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 181 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 240 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 241 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 300 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 301 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 360 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 361 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 420 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 421 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 480 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 481 ELELLKRLIND 491 >gi|49473788|ref|YP_031830.1| chromosomal replication initiation protein [Bartonella quintana str. Toulouse] gi|49239291|emb|CAF25617.1| Chromosomal replication initiator protein D [Bartonella quintana str. Toulouse] Length = 523 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 281/474 (59%), Positives = 360/474 (75%), Gaps = 6/474 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 50 EEEGAAAFARVMAQLKAQVGIEAYTSWFGRLKLAEYSRNLVKLSVPTAFLRSWINNHYGS 109 Query: 92 TITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +T L+++E+S I VE++VR V+ V +T+++P + + ++ + K Sbjct: 110 LLTNLWKQENSAILRVEVIVRGMKRVSKGVVCRTSAAPVVLEGQTASSFVESYTEPSVKD 169 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + VFGSPLDSR+ F +F+EGSSNRVAL AA+SIAE H + +R NPLFIHASVGLG Sbjct: 170 IEAGVFGSPLDSRYTFESFVEGSSNRVALAAARSIAE--GHK-SALRFNPLFIHASVGLG 226 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQA+A A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDM Sbjct: 227 KTHLLQAVAAAALKRLMPARVIYLTAEYFMWRFATAIRDNAALSFKEQLRDIDLLIIDDM 286 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK IQ+EFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQGGV++ + + D Sbjct: 287 QFLQGKSIQNEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEVPD 346 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YEMR +L+ RL + Q++D + I++EVL ++A+TV SGR+++GAFNQL+FR SF L Sbjct: 347 YEMRLKMLRQRLKVVQQDDNMVVISDEVLQYIAKTVLGSGRDIEGAFNQLLFRQSFESDL 406 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E DELL HL +GE+K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQVAMYL Sbjct: 407 SLERIDELLGHLTRSGESKRIRIEEIQRAVARHYNVSKQDLLSNRRTRTVVKPRQVAMYL 466 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 467 AKMLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 520 >gi|260567348|ref|ZP_05837818.1| chromosomal replication initiation protein [Brucella suis bv. 4 str. 40] gi|260156866|gb|EEW91946.1| chromosomal replication initiation protein [Brucella suis bv. 4 str. 40] Length = 527 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 287/503 (57%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 28 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 87 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALP--SVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P + + + P++T + Sbjct: 88 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 147 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 148 FPVGQS---FGGQSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAA 204 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 205 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 261 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 262 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 321 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 322 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 381 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 382 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 441 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 442 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 501 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 502 EDLVGADTKLAQELELLKRLIND 524 >gi|13474648|ref|NP_106217.1| chromosomal replication initiation protein [Mesorhizobium loti MAFF303099] gi|14025403|dbj|BAB52003.1| chromosomal replication initiator protein; DnaA [Mesorhizobium loti MAFF303099] Length = 514 Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/501 (55%), Positives = 362/501 (72%), Gaps = 30/501 (5%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 + ++ + + E F V ++LK ++G +VY+SWF R+K IV +SVPT FL++ Sbjct: 20 IGANEMAVSSDAEQKFDRVKTQLKARLGAEVYSSWFGRMKVAEASKGIVRISVPTAFLRS 79 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 WI YL+ I++L+++E + + +EI+VR+ + S + +L+P ++ Sbjct: 80 WINGHYLDLISELWKQEDADLLKIEIVVRTAT-----RQGRSHAEPELAPARKMTRQTQT 134 Query: 144 ILGKQTISP----------------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 L T+SP V GSPLD R+ F +FIEG SNRVA AA+ Sbjct: 135 ALAAGTVSPGRVERPPVPRPGAAVESEFRHNVLGSPLDPRYTFGSFIEGPSNRVAFAAAK 194 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 ++AE S + VR NPLF+HA+VGLGKTHLLQAIA S+K+ P RVVYLTAEYFMWRF Sbjct: 195 AVAESQS---SAVRFNPLFLHATVGLGKTHLLQAIAAESLKQNPKSRVVYLTAEYFMWRF 251 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRP 301 A+AIRDN AL LK+ LR+IDLL+IDDMQFLQGK IQHEFCHL+N LLDSAKQVV AADRP Sbjct: 252 ATAIRDNNALTLKEQLRDIDLLIIDDMQFLQGKSIQHEFCHLINMLLDSAKQVVVAADRP 311 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 PSELESL+PR+RSRL GGV++ + D+ MR +LK RLA ++ +D L+I++E+L HVA Sbjct: 312 PSELESLEPRVRSRLNGGVALEMSAPDFAMRLGMLKLRLATARIDDASLDISDEILNHVA 371 Query: 362 RTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH 421 RTVT SGREL+GAFNQL+FR SF P +T + DE+L H+ TGE K++RIEDIQR+VA+H Sbjct: 372 RTVTGSGRELEGAFNQLLFRQSFEPQITIDRIDEILGHIYRTGEPKRVRIEDIQRIVARH 431 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 YN+S+ +LLSNRR RT+V+PRQVAMYLSK+MTPRS PEIGRRFG RDHTTVLHAVRK+E Sbjct: 432 YNVSKTELLSNRRTRTIVKPRQVAMYLSKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIED 491 Query: 482 MLETDITLKKEVELLKRLISE 502 + D TL +E+ELL+RLI++ Sbjct: 492 LSGNDNTLAQELELLRRLIND 512 >gi|294851411|ref|ZP_06792084.1| chromosomal replication initiator protein DnaA [Brucella sp. NVSL 07-0026] gi|294820000|gb|EFG36999.1| chromosomal replication initiator protein DnaA [Brucella sp. NVSL 07-0026] Length = 566 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 285/491 (58%), Positives = 360/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 79 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 138 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 139 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 195 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE G Sbjct: 196 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GS 252 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 253 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 312 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 313 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 372 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 373 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 432 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 433 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 492 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 493 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 552 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 553 ELELLKRLIND 563 >gi|254731347|ref|ZP_05189925.1| chromosomal replication initiation protein [Brucella abortus bv. 4 str. 292] Length = 540 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 286/503 (56%), Positives = 366/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF R+K + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRMKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALP--SVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P + + + P++T + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRVAL A Sbjct: 161 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAA 217 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 218 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 274 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 275 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 334 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 335 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 394 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 395 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 454 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 455 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 514 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 515 EDLVGADTKLAQELELLKRLIND 537 >gi|237814482|ref|ZP_04593480.1| chromosomal replication initiator protein DnaA [Brucella abortus str. 2308 A] gi|237789319|gb|EEP63529.1| chromosomal replication initiator protein DnaA [Brucella abortus str. 2308 A] Length = 566 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 285/491 (58%), Positives = 360/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 79 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 138 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 139 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 195 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE G Sbjct: 196 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GS 252 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 253 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 312 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 313 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 372 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 373 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 432 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 433 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 492 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 493 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 552 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 553 ELELLKRLIND 563 >gi|319898309|ref|YP_004158402.1| chromosomal replication initiator protein DnaA [Bartonella clarridgeiae 73] gi|319402273|emb|CBI75812.1| chromosomal replication initiator protein DnaA [Bartonella clarridgeiae 73] Length = 520 Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust. Identities = 284/476 (59%), Positives = 358/476 (75%), Gaps = 8/476 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK Q+G + Y SWF RLK N++ LSVPT FL++WI N Y Sbjct: 45 EEESTAAFARVMAQLKAQIGVEAYTSWFGRLKLAEYNRNLIKLSVPTAFLRSWINNHYSA 104 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTA-SSPSITKLSPINTNISKSPIILGKQTI 150 +T L+Q+E+S I VE++VRS+ S S+ S + P ++S G+Q+I Sbjct: 105 LLTTLWQQENSEILRVEVIVRSMERVSKGLVCRSNKSSVVIVPEEQSVSPLVESYGEQSI 164 Query: 151 SP----VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 VFGSPLDSR+ F +F+EGSSNRVAL AA+SIAE H +++R NPLFI+ASVG Sbjct: 165 KGIQVGVFGSPLDSRYTFESFVEGSSNRVALAAARSIAE--GHK-SSLRFNPLFIYASVG 221 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLLQAIA A++KR +RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+ID Sbjct: 222 LGKTHLLQAIAAAALKRSTPVRVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIID 281 Query: 267 DMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 DMQFLQGK IQ EFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RSRLQGGV++ + Sbjct: 282 DMQFLQGKSIQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIEA 341 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYEMR IL+ RL +Q++D + I++E+L ++A+TV SGR+++GAFNQL+FR SF Sbjct: 342 PDYEMRLEILRQRLKAAQQDDNMITISDEILEYIAKTVLGSGRDIEGAFNQLLFRQSFET 401 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 L+ E DE L HL +GE K++RIE+IQR VA+HYNISR DLLSNRR RTVV+PRQVAM Sbjct: 402 DLSLERIDEFLGHLTRSGELKRIRIEEIQRTVARHYNISRQDLLSNRRTRTVVKPRQVAM 461 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 462 YLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 517 >gi|38257742|sp|Q98BG9|DNAA_RHILO RecName: Full=Chromosomal replication initiator protein DnaA Length = 490 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/491 (56%), Positives = 358/491 (72%), Gaps = 30/491 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + E F V ++LK ++G +VY+SWF R+K IV +SVPT FL++WI YL+ I Sbjct: 6 DAEQKFDRVKTQLKARLGAEVYSSWFGRMKVAEASKGIVRISVPTAFLRSWINGHYLDLI 65 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP- 152 ++L+++E + + +EI+VR+ + S + +L+P ++ L T+SP Sbjct: 66 SELWKQEDADLLKIEIVVRTAT-----RQGRSHAEPELAPARKMTRQTQTALAAGTVSPG 120 Query: 153 ---------------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 V GSPLD R+ F +FIEG SNRVA AA+++AE S Sbjct: 121 RVERPPVPRPGAAVESEFRHNVLGSPLDPRYTFGSFIEGPSNRVAFAAAKAVAESQS--- 177 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLF+HA+VGLGKTHLLQAIA S+K+ P RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 178 SAVRFNPLFLHATVGLGKTHLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNAL 237 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 LK+ LR+IDLL+IDDMQFLQGK IQHEFCHL+N LLDSAKQVV AADRPPSELESL+PR Sbjct: 238 TLKEQLRDIDLLIIDDMQFLQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPR 297 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRL GGV++ + D+ MR +LK RLA ++ +D L+I++E+L HVARTVT SGREL Sbjct: 298 VRSRLNGGVALEMSAPDFAMRLGMLKLRLATARIDDASLDISDEILNHVARTVTGSGREL 357 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P +T + DE+L H+ TGE K++RIEDIQR+VA+HYN+S+ +LLS Sbjct: 358 EGAFNQLLFRQSFEPQITIDRIDEILGHIYRTGEPKRVRIEDIQRIVARHYNVSKTELLS 417 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYLSK+MTPRS PEIGRRFG RDHTTVLHAVRK+E + D TL + Sbjct: 418 NRRTRTIVKPRQVAMYLSKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLSGNDNTLAQ 477 Query: 492 EVELLKRLISE 502 E+ELL+RLI++ Sbjct: 478 ELELLRRLIND 488 >gi|61212583|sp|Q6G0V6|DNAA_BARQU RecName: Full=Chromosomal replication initiator protein DnaA Length = 494 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 281/474 (59%), Positives = 360/474 (75%), Gaps = 6/474 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 21 EEEGAAAFARVMAQLKAQVGIEAYTSWFGRLKLAEYSRNLVKLSVPTAFLRSWINNHYGS 80 Query: 92 TITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +T L+++E+S I VE++VR V+ V +T+++P + + ++ + K Sbjct: 81 LLTNLWKQENSAILRVEVIVRGMKRVSKGVVCRTSAAPVVLEGQTASSFVESYTEPSVKD 140 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + VFGSPLDSR+ F +F+EGSSNRVAL AA+SIAE H + +R NPLFIHASVGLG Sbjct: 141 IEAGVFGSPLDSRYTFESFVEGSSNRVALAAARSIAE--GHK-SALRFNPLFIHASVGLG 197 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQA+A A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDM Sbjct: 198 KTHLLQAVAAAALKRLMPARVIYLTAEYFMWRFATAIRDNAALSFKEQLRDIDLLIIDDM 257 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK IQ+EFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQGGV++ + + D Sbjct: 258 QFLQGKSIQNEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEVPD 317 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YEMR +L+ RL + Q++D + I++EVL ++A+TV SGR+++GAFNQL+FR SF L Sbjct: 318 YEMRLKMLRQRLKVVQQDDNMVVISDEVLQYIAKTVLGSGRDIEGAFNQLLFRQSFESDL 377 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E DELL HL +GE+K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQVAMYL Sbjct: 378 SLERIDELLGHLTRSGESKRIRIEEIQRAVARHYNVSKQDLLSNRRTRTVVKPRQVAMYL 437 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 438 AKMLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 491 >gi|23500917|ref|NP_697044.1| chromosomal replication initiation protein [Brucella suis 1330] gi|261755890|ref|ZP_05999599.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 3 str. 686] gi|38257642|sp|Q8G3E7|DNAA_BRUSU RecName: Full=Chromosomal replication initiator protein DnaA gi|23346770|gb|AAN28959.1| chromosomal replication initiator protein DnaA [Brucella suis 1330] gi|261745643|gb|EEY33569.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 3 str. 686] Length = 496 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 285/491 (58%), Positives = 360/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 9 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 68 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 69 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 125 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE G Sbjct: 126 QSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GS 182 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 183 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 242 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 243 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 302 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 303 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 362 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 363 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 422 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 423 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 482 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 483 ELELLKRLIND 493 >gi|62288992|ref|YP_220785.1| chromosomal replication initiation protein [Brucella abortus bv. 1 str. 9-941] gi|82698933|ref|YP_413507.1| chromosomal replication initiation protein [Brucella melitensis biovar Abortus 2308] gi|148559145|ref|YP_001258050.1| chromosomal replication initiation protein [Brucella ovis ATCC 25840] gi|256368466|ref|YP_003105972.1| chromosomal replication initiation protein [Brucella microti CCM 4915] gi|261316660|ref|ZP_05955857.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis B2/94] gi|261324123|ref|ZP_05963320.1| chromosomal replication initiator protein dnaA [Brucella neotomae 5K33] gi|261751325|ref|ZP_05995034.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 5 str. 513] gi|265987732|ref|ZP_06100289.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M292/94/1] gi|265992206|ref|ZP_06104763.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 1 str. Rev.1] gi|265993946|ref|ZP_06106503.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 3 str. Ether] gi|38257710|sp|Q8YED5|DNAA_BRUME RecName: Full=Chromosomal replication initiator protein DnaA gi|71151794|sp|Q57G10|DNAA_BRUAB RecName: Full=Chromosomal replication initiator protein DnaA gi|62195124|gb|AAX73424.1| DnaA, chromosomal replication initiator protein [Brucella abortus bv. 1 str. 9-941] gi|82615034|emb|CAJ09955.1| ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella melitensis biovar Abortus 2308] gi|148370402|gb|ABQ60381.1| chromosomal replication initiator protein DnaA [Brucella ovis ATCC 25840] gi|255998624|gb|ACU47023.1| chromosomal replication initiation protein [Brucella microti CCM 4915] gi|261295883|gb|EEX99379.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis B2/94] gi|261300103|gb|EEY03600.1| chromosomal replication initiator protein dnaA [Brucella neotomae 5K33] gi|261741078|gb|EEY29004.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 5 str. 513] gi|262764927|gb|EEZ10848.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 3 str. Ether] gi|263003272|gb|EEZ15565.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 1 str. Rev.1] gi|264659929|gb|EEZ30190.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M292/94/1] Length = 496 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 285/491 (58%), Positives = 360/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 9 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 68 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 69 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 125 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE G Sbjct: 126 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GS 182 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 183 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 242 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 243 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 302 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 303 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 362 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 363 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 422 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 423 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 482 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 483 ELELLKRLIND 493 >gi|254713413|ref|ZP_05175224.1| chromosomal replication initiation protein [Brucella ceti M644/93/1] gi|254716230|ref|ZP_05178041.1| chromosomal replication initiation protein [Brucella ceti M13/05/1] Length = 540 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 286/503 (56%), Positives = 365/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P+ + + P++T + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SNRV L A Sbjct: 161 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVVLAA 217 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 218 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 274 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 275 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 334 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 335 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 394 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 395 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 454 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 455 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 514 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 515 EDLVGADTKLAQELELLKRLIND 537 >gi|260755857|ref|ZP_05868205.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 6 str. 870] gi|260760806|ref|ZP_05873149.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 2 str. 86/8/59] gi|260884882|ref|ZP_05896496.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 9 str. C68] gi|261314779|ref|ZP_05953976.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M163/99/10] gi|260671238|gb|EEX58059.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 2 str. 86/8/59] gi|260675965|gb|EEX62786.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 6 str. 870] gi|260874410|gb|EEX81479.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 9 str. C68] gi|261303805|gb|EEY07302.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M163/99/10] Length = 494 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 285/491 (58%), Positives = 360/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 7 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 66 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 67 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 123 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE G Sbjct: 124 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GS 180 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 181 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 240 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 241 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 300 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 301 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 360 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 361 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 420 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 421 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 480 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 481 ELELLKRLIND 491 >gi|260759080|ref|ZP_05871428.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 4 str. 292] gi|260669398|gb|EEX56338.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 4 str. 292] Length = 494 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 284/491 (57%), Positives = 360/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF R+K + +IV LSVPT FL++WI N Y E +T+ Sbjct: 7 EEAFERLTAKLKARVGGEIYSSWFGRMKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 66 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 67 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 123 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE G Sbjct: 124 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GS 180 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 181 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 240 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 241 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 300 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 301 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 360 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 361 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 420 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 421 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 480 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 481 ELELLKRLIND 491 >gi|256158687|ref|ZP_05456570.1| chromosomal replication initiation protein [Brucella ceti M490/95/1] Length = 546 Score = 549 bits (1414), Expect = e-154, Method: Compositional matrix adjust. Identities = 286/503 (56%), Positives = 365/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P+ + + P++T + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 166 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SN VAL A Sbjct: 167 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAA 223 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 224 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 280 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 281 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 340 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 341 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 400 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 401 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 460 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 461 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 520 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 521 EDLVGADTKLAQELELLKRLIND 543 >gi|319407986|emb|CBI81640.1| chromosomal replication initiator protein DnaA [Bartonella schoenbuchensis R1] Length = 524 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 281/478 (58%), Positives = 358/478 (74%), Gaps = 10/478 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 LE + FT V ++LK +VG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 48 LEEEGAAAFTRVMAQLKVRVGVEAYTSWFGRLKLSEYNRNLVKLSVPTAFLRSWINNHYG 107 Query: 91 ETITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPII--L 145 +T L+Q+E+S I VE++VR V+ V KT S + NT+ + Sbjct: 108 SLLTSLWQQENSAILRVEVIVRDLKRVSKNGVCKTNGSSVVAVPEEQNTSSLAESYVEHS 167 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY-TTVRLNPLFIHAS 204 K + + +FGSPLDSR+ F F+EG+SNRVAL AA+SIAE G+ + +R NPLFIHAS Sbjct: 168 AKNSQAGIFGSPLDSRYTFENFVEGASNRVALAAARSIAE----GHKSALRFNPLFIHAS 223 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHLLQAIA A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+ Sbjct: 224 VGLGKTHLLQAIAAAALKRLTPARVIYLTAEYFMWRFATAIRDNNALSFKEQLRDIDLLI 283 Query: 265 IDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 IDDMQFLQGK IQHEFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RSRLQGGV++ + Sbjct: 284 IDDMQFLQGKSIQHEFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEI 343 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 DYEMR +L+ RL +++++D + I+ ++L ++A+T+ SGR+++GAFNQL+FR SF Sbjct: 344 EAPDYEMRLKMLQQRLKVARQDDSAIEISNDILEYIAKTILGSGRDIEGAFNQLLFRQSF 403 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 L+ E DELL HL +GE K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQV Sbjct: 404 ESDLSLERVDELLGHLTRSGEPKRIRIEEIQRTVARHYNVSKQDLLSNRRTRTVVKPRQV 463 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 464 AMYLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLIYDDQTLAKELELLKRLIGE 521 >gi|319779750|ref|YP_004139226.1| chromosomal replication initiator protein DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165638|gb|ADV09176.1| chromosomal replication initiator protein DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 515 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/502 (55%), Positives = 362/502 (72%), Gaps = 31/502 (6%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 + + + + E F V ++LK ++G +VY+SWF R+K IV +SVPT FL++ Sbjct: 20 IGANDMAVSSDAEQKFDRVKTQLKARLGTEVYSSWFGRMKVAEASKGIVRISVPTAFLRS 79 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-SP 142 WI YL+ I++L+++E + ++I+VR+ + + P +T P + +++ + Sbjct: 80 WINGHYLDLISELWKQEDPDLLKIDIVVRTATRQG--RAQAEPEVT---PARSKVTRQTQ 134 Query: 143 IILGKQTISP----------------------VFGSPLDSRFVFSTFIEGSSNRVALTAA 180 L T+SP V GSPLD R+ F +FIEG SNRVA AA Sbjct: 135 TALAAGTVSPSRVERASTPRPGTPIESEFRHNVLGSPLDPRYTFGSFIEGPSNRVAFAAA 194 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +++AE S + VR NPLF+HA+VGLGKTHLLQAIA S+K+ P RVVYLTAEYFMWR Sbjct: 195 KAVAESQS---SAVRFNPLFLHATVGLGKTHLLQAIAAESLKQNPKSRVVYLTAEYFMWR 251 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 FA+AIRDN AL LK+ LR+IDLL+IDDMQFLQGK IQHEFCHL+N LLDSAKQVV AADR Sbjct: 252 FATAIRDNNALTLKEQLRDIDLLIIDDMQFLQGKSIQHEFCHLINMLLDSAKQVVVAADR 311 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PPSELESL+PR+RSRL GGV++ + D+ MR +LK RLA ++ +D L+I+EE+L HV Sbjct: 312 PPSELESLEPRVRSRLNGGVALEMSAPDFAMRLGMLKLRLATARSDDASLDISEEILNHV 371 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 ARTVT SGREL+GAFNQL+FR SF P +T + DE+L H+ TGE K++RIEDIQR+VA+ Sbjct: 372 ARTVTGSGRELEGAFNQLLFRQSFEPQITIDRIDEILGHIYRTGEPKRVRIEDIQRIVAR 431 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 HYN+S+ +LLSNRR RT+V+PRQVAMYLSK+MTPRS PEIGRRFG RDHTTVLHAVRK+E Sbjct: 432 HYNVSKTELLSNRRTRTIVKPRQVAMYLSKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIE 491 Query: 481 KMLETDITLKKEVELLKRLISE 502 + D TL +E+ELL+RLI++ Sbjct: 492 DLSGNDNTLAQELELLRRLIND 513 >gi|256254092|ref|ZP_05459628.1| chromosomal replication initiation protein [Brucella ceti B1/94] Length = 540 Score = 548 bits (1413), Expect = e-154, Method: Compositional matrix adjust. Identities = 286/503 (56%), Positives = 365/503 (72%), Gaps = 33/503 (6%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRI------QGVEILVRSVALP--SVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I V A P + + + P++T + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 136 TNISKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S G Q++ V GSPLD R+ F TF++G+SN VAL A Sbjct: 161 FPVGQS---FGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAA 217 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A++IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMW Sbjct: 218 ARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMW 274 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 RFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AAD Sbjct: 275 RFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAAD 334 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PSELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L H Sbjct: 335 RAPSELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAH 394 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 VARTVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA Sbjct: 395 VARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVA 454 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 455 RHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKI 514 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E ++ D L +E+ELLKRLI++ Sbjct: 515 EDLVGADTKLAQELELLKRLIND 537 >gi|319406516|emb|CBI80158.1| chromosomal replication initiator protein DnaA [Bartonella sp. 1-1C] Length = 520 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 282/471 (59%), Positives = 357/471 (75%), Gaps = 12/471 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 F V ++LK Q+G + Y SWF RLK N+V LSVPT FL++WI N Y +T L+Q Sbjct: 52 FARVMAQLKAQIGVEAYTSWFGRLKLAEYNRNLVKLSVPTAFLRSWINNHYSALLTTLWQ 111 Query: 99 EEHSRIQGVEILVRSVALPSVEK---TASSPSITKLSPINTNISKSPIILGKQTISP--- 152 +E+S I VE++VRS + V K S+ S + P ++S +Q+I Sbjct: 112 QENSAILRVEVIVRS--MERVSKGFVCGSNKSSIVIIPEEQSVSSVVESYAEQSIKSNQV 169 Query: 153 -VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 VFGSPLDSR+ F FIEG+SNRVAL AA+SIAE H +++R NPLFI+ASVGLGKTH Sbjct: 170 GVFGSPLDSRYTFENFIEGASNRVALAAARSIAE--GHK-SSLRFNPLFIYASVGLGKTH 226 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LLQAIA A++KR RV+YLTAEYFMWRFA AIRDN AL+ K+ LR+IDLL+IDDMQFL Sbjct: 227 LLQAIAAAALKRLTPARVIYLTAEYFMWRFAVAIRDNDALSFKEQLRDIDLLIIDDMQFL 286 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 QGK IQ EFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RSRLQGGV++ + DYEM Sbjct: 287 QGKSIQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVTLEIETPDYEM 346 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R ++L+ RL ++Q++D + I++E+L ++A+TV SGR+++GAFNQL+FR SF L+ E Sbjct: 347 RLAMLRQRLKVAQQDDNMITISDEILEYIAKTVLGSGRDIEGAFNQLLFRQSFEVDLSLE 406 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 DELL HL +GE+K++RIE+IQR VA+HYN+SR DLLSNRR RT+V+PRQVAMYL+K+ Sbjct: 407 RIDELLGHLTRSGESKRIRIEEIQRTVARHYNVSRQDLLSNRRTRTIVKPRQVAMYLAKV 466 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 467 LTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 517 >gi|225626552|ref|ZP_03784591.1| chromosomal replication initiator protein DnaA [Brucella ceti str. Cudo] gi|225618209|gb|EEH15252.1| chromosomal replication initiator protein DnaA [Brucella ceti str. Cudo] Length = 566 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 284/491 (57%), Positives = 359/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 79 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 138 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 139 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 195 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SN VAL AA++IAE G Sbjct: 196 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAAARTIAEA---GS 252 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 253 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 312 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 313 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 372 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 373 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 432 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 433 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 492 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 493 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 552 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 553 ELELLKRLIND 563 >gi|261321147|ref|ZP_05960344.1| chromosomal replication initiator protein dnaA [Brucella ceti M644/93/1] gi|261293837|gb|EEX97333.1| chromosomal replication initiator protein dnaA [Brucella ceti M644/93/1] Length = 496 Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust. Identities = 284/491 (57%), Positives = 359/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 9 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 68 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 69 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 125 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRV L AA++IAE G Sbjct: 126 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVVLAAARTIAEA---GS 182 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 183 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 242 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 243 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 302 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 303 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 362 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 363 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 422 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 423 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 482 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 483 ELELLKRLIND 493 >gi|261218003|ref|ZP_05932284.1| chromosomal replication initiator protein dnaA [Brucella ceti M13/05/1] gi|260923092|gb|EEX89660.1| chromosomal replication initiator protein dnaA [Brucella ceti M13/05/1] Length = 494 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 284/491 (57%), Positives = 359/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 7 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 66 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 67 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 123 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SNRV L AA++IAE G Sbjct: 124 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVVLAAARTIAEA---GS 180 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 181 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 240 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 241 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 300 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 301 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 360 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 361 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 420 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 421 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 480 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 481 ELELLKRLIND 491 >gi|261221232|ref|ZP_05935513.1| chromosomal replication initiator protein dnaA [Brucella ceti B1/94] gi|260919816|gb|EEX86469.1| chromosomal replication initiator protein dnaA [Brucella ceti B1/94] Length = 494 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 284/491 (57%), Positives = 359/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 7 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 66 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 67 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 123 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SN VAL AA++IAE G Sbjct: 124 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAAARTIAEA---GS 180 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 181 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 240 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 241 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 300 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 301 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 360 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 361 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 420 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 421 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 480 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 481 ELELLKRLIND 491 >gi|260169591|ref|ZP_05756402.1| chromosomal replication initiation protein [Brucella sp. F5/99] gi|261759117|ref|ZP_06002826.1| chromosomal replication initiation protein [Brucella sp. F5/99] gi|265997193|ref|ZP_06109750.1| chromosomal replication initiator protein dnaA [Brucella ceti M490/95/1] gi|261739101|gb|EEY27097.1| chromosomal replication initiation protein [Brucella sp. F5/99] gi|262551661|gb|EEZ07651.1| chromosomal replication initiator protein dnaA [Brucella ceti M490/95/1] Length = 496 Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust. Identities = 284/491 (57%), Positives = 359/491 (73%), Gaps = 30/491 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 9 EEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 68 Query: 96 LFQEEHSRI------QGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGK 147 L+QEE+ +I V A P+ + + P++T + + +S G Sbjct: 69 LWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQS---FGG 125 Query: 148 QTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 Q++ V GSPLD R+ F TF++G+SN VAL AA++IAE G Sbjct: 126 QSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAAARTIAEA---GS 182 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 183 SAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNAL 242 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R Sbjct: 243 SFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVR 302 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL Sbjct: 303 VRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGREL 362 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLS Sbjct: 363 EGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLS 422 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L + Sbjct: 423 NRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQ 482 Query: 492 EVELLKRLISE 502 E+ELLKRLI++ Sbjct: 483 ELELLKRLIND 493 >gi|319403601|emb|CBI77186.1| chromosomal replication initiator protein DnaA [Bartonella rochalimae ATCC BAA-1498] Length = 524 Score = 545 bits (1404), Expect = e-153, Method: Compositional matrix adjust. Identities = 281/471 (59%), Positives = 356/471 (75%), Gaps = 12/471 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 F V ++LK Q+G + Y SWF RLK N+V LSVPT FL++WI N Y +T L+Q Sbjct: 56 FARVMAQLKAQIGVEAYTSWFGRLKLAEYNRNLVKLSVPTAFLRSWINNHYSTLLTTLWQ 115 Query: 99 EEHSRIQGVEILVRSVALPSVEK---TASSPSITKLSPINTNISKSPIILGKQTISP--- 152 +E+S I VE++VRS + V K S+ S + P +S +Q++ Sbjct: 116 QENSAILRVEVIVRS--MERVSKGFLCGSNKSSIVIEPEEQPVSSLVESYAEQSVKSNQE 173 Query: 153 -VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 VFGSPLDSR+ F FIEG+SNRVAL AA+SIAE H +++R NPLFI+ASVGLGKTH Sbjct: 174 GVFGSPLDSRYTFENFIEGTSNRVALAAARSIAE--GHK-SSLRFNPLFIYASVGLGKTH 230 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LLQAIA A++KR RV+YLTAEYFMWRFA AIRDN AL+ K+ LR+IDLL+IDDMQFL Sbjct: 231 LLQAIAAAALKRLTPARVIYLTAEYFMWRFAVAIRDNDALSFKEQLRDIDLLIIDDMQFL 290 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 QGK IQ EFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RSRLQGGV++ + DYEM Sbjct: 291 QGKSIQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIETPDYEM 350 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R ++L+ RL ++Q++D + I++E+L ++A+TV SGR+++GAFNQL+FR SF L+ E Sbjct: 351 RLAMLRQRLKVAQQDDNMITISDEILEYIAKTVLGSGRDIEGAFNQLLFRQSFEVDLSLE 410 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 DELL HL +GE+K++RIE+IQR VA+HYN+SR DLLSNRR RT+V+PRQVAMYL+K+ Sbjct: 411 RIDELLGHLTRSGESKRIRIEEIQRTVARHYNVSRQDLLSNRRTRTIVKPRQVAMYLAKV 470 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 471 LTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 521 >gi|49474936|ref|YP_032977.1| chromosomal replication initiation protein [Bartonella henselae str. Houston-1] gi|49237741|emb|CAF26933.1| Chromosomal replication initiator protein D [Bartonella henselae str. Houston-1] Length = 523 Score = 545 bits (1403), Expect = e-153, Method: Compositional matrix adjust. Identities = 285/486 (58%), Positives = 360/486 (74%), Gaps = 30/486 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 50 EEEGAAAFARVMAQLKAQVGIEAYTSWFGRLKLAEYSRNLVKLSVPTAFLRSWINNHYGS 109 Query: 92 TITKLFQEEHSRIQGVEILVRSV------------ALPSV--EKTASSPSITKLSPINTN 137 +T L+++E+S I VE++VR + A P V EKTASS N Sbjct: 110 LLTNLWKQENSAILRVEVIVRGMKRVSKAVVCGKNAAPVVLEEKTASS--------FLEN 161 Query: 138 ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY-TTVRL 196 ++ + + + +FGSPLDSR+ F +F+EGSSNRVAL AA+SIAE G+ + +R Sbjct: 162 YTEHSV---RGVEAGIFGSPLDSRYTFESFVEGSSNRVALAAARSIAE----GHKSALRF 214 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFIHASVGLGKTHLLQAIA A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K+ Sbjct: 215 NPLFIHASVGLGKTHLLQAIAAAALKRLKPARVIYLTAEYFMWRFATAIRDNDALSFKEQ 274 Query: 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 LR+IDLL+IDDMQFLQGK IQ+EFCHLLN LLDSAKQVV AADRPPSELESLD R+RSRL Sbjct: 275 LRDIDLLIIDDMQFLQGKSIQNEFCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRL 334 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 QGGV++ + DYEMR +L+ RL ++Q++D + I++EVL ++A+T+ SGR+++GAFN Sbjct: 335 QGGVALEIEAPDYEMRLEMLRQRLKVAQQDDNMIVISDEVLQYIAKTILGSGRDIEGAFN 394 Query: 377 QLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 QL+FR SF L+ E DE L HL +GE+K++RIE+IQR VA+HYN+S+ DLLSNRR R Sbjct: 395 QLLFRQSFESDLSLERIDEFLGHLTRSGESKRIRIEEIQRAVARHYNVSKQDLLSNRRTR 454 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 TVV+PRQVAMYL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELL Sbjct: 455 TVVKPRQVAMYLAKMLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELL 514 Query: 497 KRLISE 502 KRLI E Sbjct: 515 KRLIGE 520 >gi|61212585|sp|Q6G526|DNAA_BARHE RecName: Full=Chromosomal replication initiator protein DnaA Length = 494 Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust. Identities = 285/485 (58%), Positives = 359/485 (74%), Gaps = 28/485 (5%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 21 EEEGAAAFARVMAQLKAQVGIEAYTSWFGRLKLAEYSRNLVKLSVPTAFLRSWINNHYGS 80 Query: 92 TITKLFQEEHSRIQGVEILVRSV------------ALPSV--EKTASSPSITKLSPINTN 137 +T L+++E+S I VE++VR + A P V EKTASS N Sbjct: 81 LLTNLWKQENSAILRVEVIVRGMKRVSKAVVCGKNAAPVVLEEKTASS--------FLEN 132 Query: 138 ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 ++ + + + +FGSPLDSR+ F +F+EGSSNRVAL AA+SIAE H + +R N Sbjct: 133 YTEHSV---RGVEAGIFGSPLDSRYTFESFVEGSSNRVALAAARSIAE--GHK-SALRFN 186 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFIHASVGLGKTHLLQAIA A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K+ L Sbjct: 187 PLFIHASVGLGKTHLLQAIAAAALKRLKPARVIYLTAEYFMWRFATAIRDNDALSFKEQL 246 Query: 258 RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 R+IDLL+IDDMQFLQGK IQ+EFCHLLN LLDSAKQVV AADRPPSELESLD R+RSRLQ Sbjct: 247 RDIDLLIIDDMQFLQGKSIQNEFCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRLQ 306 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 GGV++ + DYEMR +L+ RL ++Q++D + I++EVL ++A+T+ SGR+++GAFNQ Sbjct: 307 GGVALEIEAPDYEMRLEMLRQRLKVAQQDDNMIVISDEVLQYIAKTILGSGRDIEGAFNQ 366 Query: 378 LVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 L+FR SF L+ E DE L HL +GE+K++RIE+IQR VA+HYN+S+ DLLSNRR RT Sbjct: 367 LLFRQSFESDLSLERIDEFLGHLTRSGESKRIRIEEIQRAVARHYNVSKQDLLSNRRTRT 426 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+PRQVAMYL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLK Sbjct: 427 VVKPRQVAMYLAKMLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLK 486 Query: 498 RLISE 502 RLI E Sbjct: 487 RLIGE 491 >gi|121602078|ref|YP_989528.1| chromosomal replication initiation protein [Bartonella bacilliformis KC583] gi|120614255|gb|ABM44856.1| chromosomal replication initiator protein DnaA [Bartonella bacilliformis KC583] Length = 524 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 276/473 (58%), Positives = 359/473 (75%), Gaps = 16/473 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y +T L++ Sbjct: 56 FARVMAQLKTQVGIEAYTSWFGRLKLSEYNRNLVKLSVPTAFLRSWINNHYGSLLTGLWK 115 Query: 99 EEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPII------LGKQT 149 +E+S I VE++VR VA V +T +P + P++ + P++ + T Sbjct: 116 QENSAILRVEVIVRDMKRVAKNVVCRTNGNPVL----PMSEKSNALPLVENYTENSARNT 171 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + VFGSPLDSR+ F +F+EG+SNRVAL AA+S+AE H + +R NPLFIHASVGLGK Sbjct: 172 QTGVFGSPLDSRYTFDSFVEGASNRVALAAARSVAE--GHK-SALRFNPLFIHASVGLGK 228 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLLQAIA A++KR + RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDMQ Sbjct: 229 THLLQAIAAAALKRLTSTRVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDMQ 288 Query: 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 FLQG+ IQ+EFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQGGV++ + DY Sbjct: 289 FLQGRSIQYEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEAPDY 348 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 EMR +L+ RL I+Q++D + I++++L ++A+TV SGR+++GAFNQL+FR SF L+ Sbjct: 349 EMRLEMLRQRLKIAQQDDNTIAISDDILEYIAKTVLGSGRDIEGAFNQLLFRQSFETDLS 408 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + DELL HL + E +++RIE+IQR VA+HYN+S+ DLLSNRR RT+V+PRQVAMYL+ Sbjct: 409 LQRVDELLGHLTRSSELRRIRIEEIQRTVARHYNVSKQDLLSNRRTRTIVKPRQVAMYLA 468 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 469 KVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 521 >gi|90420502|ref|ZP_01228409.1| chromosomal replication initiator DnaA [Aurantimonas manganoxydans SI85-9A1] gi|90335230|gb|EAS48983.1| chromosomal replication initiator DnaA [Aurantimonas manganoxydans SI85-9A1] Length = 505 Score = 514 bits (1323), Expect = e-143, Method: Compositional matrix adjust. Identities = 255/487 (52%), Positives = 337/487 (69%), Gaps = 26/487 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I V++RLK Q+G D++ASWFQR+K + + ++VPT FL++WI++ Y E +T++F Sbjct: 23 IMERVNARLKAQLGQDIFASWFQRMKLEAPGKGVCRITVPTAFLRSWIQSHYHELLTEIF 82 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITK----------------------LSPIN 135 +EE V+I VRS A+ T P + + + Sbjct: 83 REEVPGTLRVDIAVRS-AVRGGGVTIRQPRVAEQPETTRTRAAAPRPAAQIGESRAARSA 141 Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + +P FGSPLD R+VF T +EGSSNRVAL A ++IAE +G +VR Sbjct: 142 APAEARQMFDAAPAPTPTFGSPLDPRYVFDTLVEGSSNRVALAAGRAIAE---NGPQSVR 198 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLFIHA+VGLGKTHLLQAIANA+I+R+ RVVYLTAEYFMWRFA+AIRDN AL+LK+ Sbjct: 199 FNPLFIHAAVGLGKTHLLQAIANAAIRREDKPRVVYLTAEYFMWRFATAIRDNRALDLKE 258 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 +LR ID+L+IDD QFLQGK IQ EFCHLLN+L+DSAKQV+ AADRP ELESLDPR+RSR Sbjct: 259 TLRGIDILIIDDTQFLQGKSIQQEFCHLLNALIDSAKQVICAADRPAMELESLDPRVRSR 318 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L G+++ L DYEMR SI++ R A + EDP ++ + V+ +A+ V SGR+L+GAF Sbjct: 319 LSNGITLELAAPDYEMRRSIIRTRAAAMRAEDPSFDMPDGVIDTIAQRVAGSGRDLEGAF 378 Query: 376 NQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 NQ+ FRHS L+AE D+LLS L +++RIEDI + V++HYN++R D+LS RR Sbjct: 379 NQIAFRHSLGQPLSAEHLDDLLSQLTRANSERRVRIEDILKFVSRHYNVTRTDILSARRT 438 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 RT+VRPRQ+AMYL+K MTPRS PEIGRRFG RDHTTVLHAVRK+E D L +E+++ Sbjct: 439 RTIVRPRQIAMYLAKTMTPRSLPEIGRRFGGRDHTTVLHAVRKIEGERAKDDKLSEELDI 498 Query: 496 LKRLISE 502 ++R+I E Sbjct: 499 IRRMIEE 505 >gi|304392441|ref|ZP_07374382.1| chromosomal replication initiator protein DnaA [Ahrensia sp. R2A130] gi|303295545|gb|EFL89904.1| chromosomal replication initiator protein DnaA [Ahrensia sp. R2A130] Length = 596 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 257/503 (51%), Positives = 351/503 (69%), Gaps = 43/503 (8%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V ++L ++GP+ +ASWF R + ++ + + +SVPT FLK+WI+ Y + L+Q Sbjct: 96 WSRVQAQLMAKLGPESFASWFDRCRLETISKSQLTISVPTTFLKSWIRTHYAGILLTLWQ 155 Query: 99 EEHSRIQGVEILVRSVALPS-----------VEKTASSPSITKLSPI--NTNISKSPIIL 145 E+ I V+I+VRS + V +A S S +P+ N + P Sbjct: 156 EQSEGILKVDIVVRSAVRSANAESGEAVDQLVNGSAPSASDATGAPMVSNGGMGTMPGAS 215 Query: 146 GKQTISPV------------------------FGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 ++ + + GSPLD F F+TF+EG+SNRVA AA+ Sbjct: 216 TQRNFATLPGEDVPAFGAGAAGRQAAEAGVGFAGSPLDPSFTFATFVEGASNRVACAAAR 275 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 S+AE D T R NPLF+HA+VGLGKTHLLQAIA + R ++++YLTAEYFMWRF Sbjct: 276 SVAEADG---TAARFNPLFLHANVGLGKTHLLQAIAWGASARNSGIKILYLTAEYFMWRF 332 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRP 301 ASAIRD AL+ K+SLR+IDLLLIDDMQFLQGK IQ EFCHLLN+L+DSAKQVV AADRP Sbjct: 333 ASAIRDQSALSFKESLRDIDLLLIDDMQFLQGKSIQQEFCHLLNALIDSAKQVVVAADRP 392 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P++LESLD R+RSRLQGGV++ +G D EMR ++L+ R +++EDP L I ++L +VA Sbjct: 393 PAQLESLDARVRSRLQGGVALEVGSPDIEMRKAMLELRYREARREDPNLAIPSDILDYVA 452 Query: 362 RTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 V +SGR+L+GAFNQL+ +H F+ P+ +I +++LSHLV +GE +++R+EDIQ++V+ Sbjct: 453 TRVASSGRDLEGAFNQLLIQHKFSDKPVEIEQI-EKMLSHLVQSGEQRRVRVEDIQKVVS 511 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HYN+S+NDLLSNRR R +VRPRQ+AMYLSK++TPRS PEIGRRFG RDHTTVLHAVRK+ Sbjct: 512 RHYNVSKNDLLSNRRTRIIVRPRQIAMYLSKMLTPRSLPEIGRRFGGRDHTTVLHAVRKI 571 Query: 480 EKMLETDITLKKEVELLKRLISE 502 E +L+ + L E+ELLKRLI+E Sbjct: 572 EGLLKEETQLAHEIELLKRLIAE 594 >gi|114704371|ref|ZP_01437279.1| chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] gi|114539156|gb|EAU42276.1| chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] Length = 504 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 250/488 (51%), Positives = 327/488 (67%), Gaps = 24/488 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E I V++RLK Q+GP+++ASWFQR+ I +SVPT FL++WI+ Y E +T+ Sbjct: 20 EMIMDRVNARLKAQLGPEIFASWFQRMHLDHAGKGICQVSVPTAFLRSWIRGHYQEMLTE 79 Query: 96 LFQEEHSRIQGVEILVRSVALPSV--------EKTASSPSITKLSPINTNI---SKSPII 144 F+ E V+I+VRS + A SPS S N+ + + Sbjct: 80 AFKAEVPGTLRVDIVVRSAVRGGGVNIRKHGRDLEAGSPSGLAKSGQPANVVEFAARDVA 139 Query: 145 LGK------QTISPV----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 G+ +T+ GSPLD R+VF TF+EG++NRVA+ A ++IAE +G + Sbjct: 140 SGEARPTRSKTVGVANGCEIGSPLDPRYVFDTFVEGTANRVAMAAGRAIAE---NGPQSF 196 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R NPLFIHA VGLGKTHLLQAIANA+ R RVVYLTAEYFMWRFASAIRDN AL+LK Sbjct: 197 RFNPLFIHAGVGLGKTHLLQAIANAAAGRDDAPRVVYLTAEYFMWRFASAIRDNKALDLK 256 Query: 255 DSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 ++LR D+L+IDD+QFLQGK IQ EFCHLLN+L+DSAK V+ AADRP ELESLDPR+RS Sbjct: 257 ETLRGTDVLIIDDVQFLQGKSIQQEFCHLLNALIDSAKHVICAADRPAKELESLDPRVRS 316 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 RL G+++ L DY MR I++ R+ EDP ++EE + +AR V +GR+L+GA Sbjct: 317 RLSNGITLELATPDYAMRREIIEMRIRALAAEDPTFVLSEETIDAIARRVDGTGRDLEGA 376 Query: 375 FNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 FNQ+ FRHS L E E+L+ T +++RIEDI + V++HYNISR D+LS RR Sbjct: 377 FNQIAFRHSLGQPLNPEAIVEILAQFSRTSAERRVRIEDILKFVSRHYNISRTDILSARR 436 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RT+VRPRQ+AMYL+K MTPRS PEIGRRFG RDHTTVLHAVRK+E D +E++ Sbjct: 437 TRTIVRPRQIAMYLAKTMTPRSLPEIGRRFGGRDHTTVLHAVRKIEAERGKDDAFSEELD 496 Query: 495 LLKRLISE 502 +++R+I E Sbjct: 497 VIRRMIEE 504 >gi|218660627|ref|ZP_03516557.1| chromosomal replication initiation protein [Rhizobium etli IE4771] Length = 321 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 219/306 (71%), Positives = 258/306 (84%), Gaps = 3/306 (0%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 SP+FGSPLDSRF F TF+EGSSNRVAL AA++IAE G VR NPLF+H++VGLGKT Sbjct: 19 SPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTIAEA---GSGAVRFNPLFVHSTVGLGKT 75 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLLQAIANA+++ LRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDLL+IDDMQF Sbjct: 76 HLLQAIANAAVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQF 135 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ L DYE Sbjct: 136 LQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYE 195 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 MR ILK RLA +++EDP L I ++L HVAR +T SGREL+GAFNQL+FR SF P L+ Sbjct: 196 MRLEILKRRLAAARQEDPSLEIPADLLQHVARNITASGRELEGAFNQLIFRRSFEPNLSI 255 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E DELL+HLV +GE +++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK Sbjct: 256 ERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLSK 315 Query: 451 IMTPRS 456 +TPRS Sbjct: 316 TLTPRS 321 >gi|254472133|ref|ZP_05085533.1| chromosomal replication initiator protein DnaA [Pseudovibrio sp. JE062] gi|211958416|gb|EEA93616.1| chromosomal replication initiator protein DnaA [Pseudovibrio sp. JE062] Length = 489 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 227/481 (47%), Positives = 323/481 (67%), Gaps = 30/481 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V RL+ ++G DV+ SWF R+ + V LSVPT FLK WI++ Y E + L++ E Sbjct: 15 VKKRLRAELGEDVFTSWFARVDMEGHNNGTVRLSVPTRFLKQWIQSHYSERLMGLWKNEC 74 Query: 102 SRIQGVEILVRSVALPSVEKTAS------SPSITKLSPINTN-------ISKSPIILGKQ 148 I +E+ VR P + + PI N S +P ++G + Sbjct: 75 DDIHKIELTVRGAVRPRPAAAKPAARPALGGKVADMRPIQVNDPVGLRAASPAPAMMGGR 134 Query: 149 -------TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + + G+ LD ++VF +F+EG SN +AL AA+ +A G V NPL++ Sbjct: 135 AGRSDLSSKDVLEGASLDPKYVFDSFVEGESNVLALAAAKQVA-----GGGVVTFNPLYL 189 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 HASVGLGKTHL+QAIAN + R RV+YLTAE+FM+RF +A++ A++ K++LR+ID Sbjct: 190 HASVGLGKTHLMQAIANQA--RMAGRRVLYLTAEHFMYRFVAALQAQSAMSFKETLRSID 247 Query: 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLLIDDMQFL GK +Q EFCH LN+L+D A+QVV AADR P+ELESLD R+RSRL GG+ Sbjct: 248 LLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVVVAADRAPAELESLDDRVRSRLAGGLV 307 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+++R +I+++R+ Q+ P + + VL +VAR VT+SGR+L+GA N+LV Sbjct: 308 VNISEPDFQLRRAIIEDRMRAQQRSYPNFTVPDAVLDYVARNVTSSGRDLEGALNRLVAH 367 Query: 382 HSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + +P+ T E+A+ L L+ E ++++IEDIQR+V+KHYN+++ DLLS RR RT+V Sbjct: 368 NQLTNSPV-TLEMAEITLRDLIRAAEPRRVKIEDIQRVVSKHYNVTKADLLSARRTRTIV 426 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRK+E++ + D L +E+ELLKR+ Sbjct: 427 RPRQIAMYLAKMMTPRSLPEIGRRFGNRDHTTVLHAVRKIEELSKADNGLAQELELLKRM 486 Query: 500 I 500 + Sbjct: 487 L 487 >gi|254503456|ref|ZP_05115607.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] gi|222439527|gb|EEE46206.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] Length = 492 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 232/495 (46%), Positives = 322/495 (65%), Gaps = 35/495 (7%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E +T V +L+ ++G DV+ SWF R+ V LSVPT FLK WI+N Y E Sbjct: 5 EAGGSEQWTRVKKQLRAELGDDVFTSWFARVDLEEHQDGTVRLSVPTRFLKQWIQNNYNE 64 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS------------ 139 + L+Q E + +E+ VR P + TA PS+ S N S Sbjct: 65 RLMGLWQRECDNVHRIELTVRGAIRPR-QVTAVQPSLPAGSAGAQNGSIEARSENLGDAT 123 Query: 140 ------KSPIILGK------QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 + +G+ T + G+ LD ++ F TF+EG SN +AL AA+ +A Sbjct: 124 HVTRAQAATAAVGRGDSASDSTRDVLQGAALDPKYTFETFVEGDSNNLALAAARQVA--- 180 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 S G T NPL++HASVGLGKTHL+QA+A S R +V+YLTAE+FM++F +A++ Sbjct: 181 SGGAVT--FNPLYLHASVGLGKTHLMQAVA--SKVRNSGRKVLYLTAEHFMYKFVAALKS 236 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 AL KD+LR IDLLLIDDMQFL GK +Q EFCH LN+L+D A+QV+ AADRPPS+L++ Sbjct: 237 QSALAFKDNLRTIDLLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRPPSDLDT 296 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 LD R+RSRL GG+ V + D+ +R SIL +R+ + K P+ ++ + VL ++AR V +S Sbjct: 297 LDDRVRSRLSGGLVVGIQEPDFVLRRSILVSRVEAAHKSYPQFDVPDSVLDYIARHVASS 356 Query: 368 GRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 GR+L+GA N+L+ + PI T E+A+ L LV + E ++++IEDIQR+V+KHYN++ Sbjct: 357 GRDLEGALNRLIAHNQLTNQPI-TQEMAEMTLRDLVRSSEPRRVKIEDIQRVVSKHYNVT 415 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 + DLLS RR RT+VRPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRK+E+M Sbjct: 416 KADLLSARRTRTIVRPRQIAMYLAKVMTPRSLPEIGRRFGNRDHTTVLHAVRKIEEMARA 475 Query: 486 DITLKKEVELLKRLI 500 D L +E+ELLKR++ Sbjct: 476 DYALAQEIELLKRML 490 >gi|328541625|ref|YP_004301734.1| Chromosomal replication initiator protein dnaA [polymorphum gilvum SL003B-26A1] gi|326411377|gb|ADZ68440.1| Chromosomal replication initiator protein dnaA [Polymorphum gilvum SL003B-26A1] Length = 491 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 228/485 (47%), Positives = 321/485 (66%), Gaps = 36/485 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V RL+ ++G DV++SWF R+ V LSVPT FLK WI++ Y + + L+Q E Sbjct: 15 VKKRLRAELGDDVFSSWFARVDLEEHCDGTVRLSVPTRFLKQWIQSNYRDRLMGLWQREC 74 Query: 102 SRIQGVEILVRSVALP-----------SVEKTASSPS--ITKLSPINTN----------- 137 + +E+ VR P V K A +P+ + +S +TN Sbjct: 75 EGVHRIELTVRGAMRPRQASTPLTSPLPVAKRAIAPANDVRPISFADTNAVAAAQAATAA 134 Query: 138 ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + + G + + + G+ LD ++ F TF+EG SN +AL AA+ +A S G T N Sbjct: 135 LGRGEADAGARDV--LQGAALDPKYTFETFVEGESNGLALAAAKQVA---SGGAVT--FN 187 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PL++HA+VGLGKTHL+QA+A + R +V+YLTAE+FM+RF +A++ AL K++L Sbjct: 188 PLYLHAAVGLGKTHLMQAVATKA--RASGRKVLYLTAEHFMYRFVAALKAQSALAFKETL 245 Query: 258 RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 R IDLLLIDDMQFL GK +Q EFCH LN+L+D A+QV+ AADR PSEL++LD R+RSRL Sbjct: 246 RTIDLLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRAPSELDTLDDRVRSRLS 305 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 GG+ V + D+ +R +IL R+A +K P + + VL +VAR V +SGR+L+GA N+ Sbjct: 306 GGLVVGIAEPDFALRRNILGARVATLKKSYPNFTVPDGVLDYVARHVVSSGRDLEGALNR 365 Query: 378 LVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 LV + P+ T ++A+ L L+ T E ++++IEDIQR+V+KHYN+++ DLLS RR Sbjct: 366 LVAHNQLTNQPV-TQDMAELTLRDLIRTSEPRRVKIEDIQRVVSKHYNVTKADLLSARRT 424 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 RT+VRPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRKVE+M DI L +E+EL Sbjct: 425 RTIVRPRQIAMYLAKVMTPRSLPEIGRRFGNRDHTTVLHAVRKVEEMARADIGLAQELEL 484 Query: 496 LKRLI 500 LKR++ Sbjct: 485 LKRML 489 >gi|298290591|ref|YP_003692530.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] gi|296927102|gb|ADH87911.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] Length = 503 Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust. Identities = 225/465 (48%), Positives = 312/465 (67%), Gaps = 11/465 (2%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V RL+ ++G +VY+SWF RL+ V IV LSVPT FLK WI+ Y++ ++ L+QEE Sbjct: 45 VRRRLRAEIGEEVYSSWFPRLELDGVQGGIVRLSVPTRFLKTWIQQHYIDRLSALWQEEA 104 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV---FGSPL 158 S + VE++VR+ L + S +I ++P ++ P + +P GSPL Sbjct: 105 SAAR-VELIVRTAVLRA--PGTGSATIRSVTPAVRVVATEPAAAVAVSANPAEVANGSPL 161 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D R F+++ G SNR+A AAQ +A + G V NPL++HA+VGLGKTHLLQAIA Sbjct: 162 DPRLTFASYRLGESNRLAHAAAQKVAGAPA-GSGPV-FNPLYLHAAVGLGKTHLLQAIAA 219 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQH 278 A + RVVYLTAE FM+ F +A++ AL K+ LR ID L+IDD+QFLQGK +Q Sbjct: 220 AGAEN--GRRVVYLTAERFMYGFVAALKSQSALAFKEQLRGIDTLVIDDLQFLQGKSVQQ 277 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EFCH LN+L+DS +QVV AADRPP+EL++L+ R+RSRL GG+ V + D E++ IL Sbjct: 278 EFCHTLNALMDSGRQVVIAADRPPAELDALEERVRSRLAGGLVVEIAPLDEELKLEILAA 337 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELL 397 R A ++ P N+ +VL +AR +GR+LDGA N+L+ + +T E+A+ + Sbjct: 338 RTASLGQQHPGFNVPGDVLGFIARHCGQNGRDLDGALNRLLAHNQLTSRAITLEMAETAV 397 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 LV +GE K++R++DI R+VAKHYN+SR D+LS RR VV+PRQ+AMYL+K +T RS Sbjct: 398 RDLVRSGEPKRVRVDDILRIVAKHYNVSRADILSQRRTANVVKPRQIAMYLAKTLTLRSL 457 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIGRRFG RDHTTVLHAVRK++ ++ TD L +EVE LKRL+S+ Sbjct: 458 PEIGRRFGGRDHTTVLHAVRKIDGLVGTDRALAEEVETLKRLVSD 502 >gi|85713964|ref|ZP_01044953.1| chromosomal replication initiator protein, DnaA [Nitrobacter sp. Nb-311A] gi|85699090|gb|EAQ36958.1| chromosomal replication initiator protein, DnaA [Nitrobacter sp. Nb-311A] Length = 509 Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust. Identities = 226/475 (47%), Positives = 311/475 (65%), Gaps = 19/475 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG D+Y+SWF R+ SV V LSVPT FLK+WI+ Y E + +Q Sbjct: 43 WSRVKGRLRSTVGEDIYSSWFARMDLESVHGESVRLSVPTRFLKSWIQAHYAERVLACWQ 102 Query: 99 EEHSRIQGVEILVRSV---ALPSVEKTASSPSITKL----SPINTNISKSPIILGKQTIS 151 E + +++ VRS A P E A +P + +L T + Sbjct: 103 AELPDVHRIDLTVRSAMRCAAPVRE--APAPDVRRLERGEGRDGTELKTVATAPASANHD 160 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + GSPLD R F +F+ G SN +A AA+ +AE +V NPL+IHA VGLGKTH Sbjct: 161 ALGGSPLDPRLTFQSFVTGRSNALAHAAARQVAE--GRRGDSVMFNPLYIHAGVGLGKTH 218 Query: 212 LLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 LLQA+ NA +R RV+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+ Sbjct: 219 LLQAVTWAGNAGTER----RVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDL 274 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V +G Sbjct: 275 QFLQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLG 334 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E+R IL++R+ ++ ++ E+VL ++A+T+T +GR+L+GA N+L+ A Sbjct: 335 EELRLGILRSRVEAARAHHASFDVPEQVLDYLAKTITHNGRDLEGAINRLLAHSKLNAQP 394 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+A+ + LV E ++++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMY Sbjct: 395 VTLEMAEREVRDLVRPQEPRRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMY 454 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D+TL EVELLKR + E Sbjct: 455 LAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVSKDVTLSDEVELLKRQLQE 509 >gi|299133399|ref|ZP_07026594.1| chromosomal replication initiator protein DnaA [Afipia sp. 1NLS2] gi|298593536|gb|EFI53736.1| chromosomal replication initiator protein DnaA [Afipia sp. 1NLS2] Length = 477 Score = 425 bits (1093), Expect = e-117, Method: Compositional matrix adjust. Identities = 227/474 (47%), Positives = 310/474 (65%), Gaps = 18/474 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 +T V RL++ VG DVY+SWF R+ V VHLSVPT FLK+WI+ Y + + +Q Sbjct: 12 WTRVKGRLRSTVGEDVYSSWFARMDLERVGGESVHLSVPTRFLKSWIQTHYADRVLSCWQ 71 Query: 99 EEHSRIQGVEILVRS-VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV---- 153 E + V++ VR+ V P V K A + +LS + + P L PV Sbjct: 72 AELPEVSRVDLTVRTPVRAPVVAKDAKASVEERLS---EHEHRGPSELRSVATVPVSASH 128 Query: 154 ---FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 GSPLD R F+TF+ G SN +AL AA+ +AE V NPL+IHA VGLGKT Sbjct: 129 EALGGSPLDPRLTFATFVGGRSNTLALAAARQVAE--GRRGDNVMFNPLYIHAGVGLGKT 186 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLLQA+ A + +V+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+QF Sbjct: 187 HLLQAVTWAG--NSADRKVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQF 244 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V +G E Sbjct: 245 LQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGALGEE 304 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APIL 388 +R ILK+R++ ++ ++ VL ++A+ +T +GR+L+GA N+L+ P+ Sbjct: 305 LRLEILKSRVSAARAHHASFDVPLPVLDYLAKAITHNGRDLEGAINRLLAHSKLNSTPV- 363 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A+ + L+ E ++++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL Sbjct: 364 TLEMAEREVRDLIRPQEPRRVKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYL 423 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D+ L EVELLKR + E Sbjct: 424 AKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIESLVSKDVALSDEVELLKRQLQE 477 >gi|83308727|emb|CAJ01637.1| putative chromosomal replication initiator protein dnaA [Methylocapsa acidiphila] Length = 508 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 231/494 (46%), Positives = 312/494 (63%), Gaps = 32/494 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E + + RL+ ++G DV++SWF RL+ + +LSVPT FLK+WI++ Y E I K Sbjct: 20 EEAWMRICRRLRIELGDDVFSSWFGRLELDELSETSAYLSVPTKFLKSWIQSHYAEKIQK 79 Query: 96 LFQEEHSRIQGVEILVRSVALP-------------------SVEKTASSPSITKLSPINT 136 E + V I VRS P +K PS S + Sbjct: 80 ALIGEFPSVSSVTIAVRSSTRPMPGRRPGPMERANKSDARTEGDKAPPPPSAYGRSEVRL 139 Query: 137 NI-SKSPIILGKQTISPV-----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + SK+P L K ++ GSPLD R FS F+ G SN++A AAQ +A + Sbjct: 140 AVESKTPERLAKASVDGAEAEIYVGSPLDRRLNFSNFLVGKSNQLAHAAAQRVASTEPGE 199 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 T NPL++HASVGLGKTHLLQA+A+A+ RV+YLTAE FM+ F SA++ A Sbjct: 200 PLT--YNPLYLHASVGLGKTHLLQAVAHAA--SDVTRRVIYLTAEKFMYGFVSALKAQTA 255 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + K+ LR ID+L+IDD+QFLQGK IQ EFCH LN+L+D+ +Q+V AADRPP +LESLD Sbjct: 256 IAFKERLRGIDVLVIDDIQFLQGKSIQQEFCHTLNALIDARRQIVIAADRPPGDLESLDE 315 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+RSRL GG+ V +G D +R IL+ R+A +Q ++ V+ +VA + T+GR+ Sbjct: 316 RVRSRLAGGLCVEMGGLDEALRVKILETRIAAAQAVHSNFDVPPAVIAYVASVIQTNGRD 375 Query: 371 LDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 LDGA N+L+ S AP L E A+ + LV T E K+++IEDIQ++VA H+N+SR D Sbjct: 376 LDGAVNRLLAHASLSGAP-LGVETAELAIRDLVRTHEPKRIKIEDIQKLVASHFNVSRAD 434 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 +LS+RR VVRPRQ+AMYLSKI+T RS PEIGRRFG RDHTTVLHAVRK+E + +D T Sbjct: 435 ILSSRRTANVVRPRQIAMYLSKILTLRSLPEIGRRFGGRDHTTVLHAVRKIEALTTSDGT 494 Query: 489 LKKEVELLKRLISE 502 L +E+ELLKR++ E Sbjct: 495 LSEEIELLKRMLME 508 >gi|209883691|ref|YP_002287548.1| chromosomal replication initiator protein DnaA [Oligotropha carboxidovorans OM5] gi|209871887|gb|ACI91683.1| chromosomal replication initiator protein DnaA [Oligotropha carboxidovorans OM5] Length = 477 Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust. Identities = 222/473 (46%), Positives = 309/473 (65%), Gaps = 16/473 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY+SWF R+ + VHLSVPT FLK+WI+ Y + + +Q Sbjct: 12 WSRVKGRLRSSVGEDVYSSWFARMDLERIGGESVHLSVPTRFLKSWIQAHYADRVLSCWQ 71 Query: 99 EEHSRIQGVEILVRS-VALPSVEKTASSPSITKLSPINTN-------ISKSPIILGKQTI 150 E I +++ VR+ V +P+ K A + +L+ + ++ P+ + Sbjct: 72 AEMPDIHRIDLTVRTPVRVPAAVKDAKATIEERLTEHDHRAHHELRAVATVPVSTSHDAL 131 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 GSPLD R F+TF+ G SN +AL AA+ +AE V NPL+IHA VGLGKT Sbjct: 132 G---GSPLDPRLTFATFVGGRSNTLALAAARQVAE--GRRGDNVMFNPLYIHAGVGLGKT 186 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLLQA+ A +V+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+QF Sbjct: 187 HLLQAVTWAG--NTSERKVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQF 244 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V +G E Sbjct: 245 LQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGALGEE 304 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 +R ILK+R+ ++ + E VL ++A+ +T +GR+L+GA N+L+ A +T Sbjct: 305 LRLEILKSRVTAARAHHASFEVPEPVLEYLAKAITHNGRDLEGAINRLLAHSKLNATSVT 364 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A+ + L+ E ++++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+ Sbjct: 365 LEMAEREVRDLIRPQEPRRVKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYLA 424 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ DI L EVELLKR + E Sbjct: 425 KTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVAKDIALSDEVELLKRQLQE 477 >gi|118590460|ref|ZP_01547862.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] gi|118436923|gb|EAV43562.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] Length = 491 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 225/494 (45%), Positives = 323/494 (65%), Gaps = 34/494 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + V +L+ ++G DV+ SWF R+ V LSVPT FLK WI+N Y + Sbjct: 5 EAGGSEQWKRVKKQLRAELGDDVFTSWFARVDLEEHQDGTVRLSVPTRFLKQWIQNNYND 64 Query: 92 TITKLFQEEHSRIQGVEILVR-------------SVALPSVEKTAS----SPSITKLSPI 134 + L+Q E + +E+ VR S+A P K A+ S +++ + + Sbjct: 65 QLMGLWQRECDNVHRIELTVRGAIRPRQTPIAKPSLAAPQGSKPATAENRSDALSDAAQV 124 Query: 135 NTNISKSPIILGKQTISP------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 T + LG+ S + G+ LD ++ F TF+EG SN +AL AA+ +A + Sbjct: 125 -TRAQAATAALGRGETSSDNARDVLQGAALDPKYTFETFVEGESNNLALAAARQVAAGGA 183 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 V NPL++HASVGLGKTHL+QA+A + R +V+YLTAE+FM++F +A++ Sbjct: 184 -----VTFNPLYLHASVGLGKTHLMQAVAAKA--RASGRKVLYLTAEHFMYKFVAALKSQ 236 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 AL K++LR IDLLLIDDMQFL GK +Q EFCH LN+L+D A+QV+ AADR PSEL++L Sbjct: 237 SALAFKENLRTIDLLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRAPSELDTL 296 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 D R+RSRL GG+ V + D+ +R +IL R+ +++ P+ ++ + VL +VAR V +SG Sbjct: 297 DDRVRSRLSGGLVVGIQEPDFALRRNILATRVDTARRNYPQFDVPDSVLDYVARHVASSG 356 Query: 369 RELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 R+L+GA N+L+ + PI T E+A+ L LV + E ++++IEDIQR+V+KHYN+++ Sbjct: 357 RDLEGALNRLIAHNQLTNQPI-TQEMAEMTLRDLVRSSEPRRVKIEDIQRVVSKHYNVTK 415 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 DLLS RR RT+VRPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRK+E+M D Sbjct: 416 ADLLSARRTRTIVRPRQIAMYLAKVMTPRSLPEIGRRFGNRDHTTVLHAVRKIEEMARAD 475 Query: 487 ITLKKEVELLKRLI 500 L +E+ELLKR++ Sbjct: 476 YALAQELELLKRML 489 >gi|188579288|ref|YP_001922733.1| chromosomal replication initiation protein [Methylobacterium populi BJ001] gi|179342786|gb|ACB78198.1| chromosomal replication initiator protein DnaA [Methylobacterium populi BJ001] Length = 501 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 219/488 (44%), Positives = 312/488 (63%), Gaps = 25/488 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + +T V RL+ ++G DV+ASWF RL+ V + L+VPT FLK+WI++ YL+ + Sbjct: 20 DIPAAWTRVKRRLRAELGEDVFASWFARLELEDVEGGVARLTVPTRFLKSWIESHYLDRV 79 Query: 94 TKLFQEEHSRIQGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIIL------ 145 F+ E + +E+ VR + P+ T + P+ T + + +P L Sbjct: 80 LTTFRAEADGVSRIEVGVRGASAPARPSAGTQTKPNPTSGPLTRLHATATPAALQGPGPM 139 Query: 146 ---------GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 G+ + G+PLD+R F++F+ G SN +A AA+ IA D G Sbjct: 140 VETEIAAPRGESGSVDLNGAPLDARLTFASFVVGRSNALAHAAAERIARSDGDGAL---Y 196 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL++HA VGLGKTHLL A +A+ R+ RV+YLTA+ FM+ F +A++ AL K+ Sbjct: 197 NPLYVHAGVGLGKTHLLHAAGHAA--REAGRRVIYLTADRFMYGFVNALKTQSALAFKER 254 Query: 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 LR IDLL++DD+QF+QGK IQ EF H LN+L+DS +QVV A+DRPP+ELE+LD R+RSRL Sbjct: 255 LRAIDLLILDDVQFIQGKSIQTEFGHTLNALIDSGRQVVVASDRPPTELEALDERVRSRL 314 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 GG+ V +G D +R SIL RL ++ P ++ V +VAR +T +GR+L+GA N Sbjct: 315 AGGLVVEIGGLDEGLRASILSARLDAVRQSHPNFEVSPAVSAYVARAITANGRDLEGAVN 374 Query: 377 QLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 +L+ + AP+ T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR Sbjct: 375 RLLAHATLTGAPV-TVETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERR 433 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 VV+PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVE Sbjct: 434 TAAVVKPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDAVLGDEVE 493 Query: 495 LLKRLISE 502 LLKR++ + Sbjct: 494 LLKRMLQD 501 >gi|240136784|ref|YP_002961251.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens AM1] gi|240006748|gb|ACS37974.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens AM1] Length = 501 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 222/489 (45%), Positives = 316/489 (64%), Gaps = 25/489 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ + +T V RL+ ++G DV+ASWF RL+ +V + L+VPT FLK+WI++ Y++ Sbjct: 19 VDLPAAWTRVKRRLRAELGEDVFASWFARLELETVDGGVARLTVPTRFLKSWIESHYIDR 78 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPS-------VEKTASSPSITKLSPINTNIS---KSP 142 + F+ E + +E+ VR + P+ + A+S + +L I T + P Sbjct: 79 VLTTFRAEADGVSRIEVGVRGPSGPARPTAGVPAKPNATSGPLNRLHAIATPAALQGPGP 138 Query: 143 II-------LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 +I G + G+PLD+R F+ F+ G SN +A AA+ IA DS G Sbjct: 139 MIETEIASPRGDSASVDLNGAPLDARLSFANFVVGRSNALAHAAAERIARSDSDGAL--- 195 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL++HA VGLGKTHLL A +A+ R+ RV+YLTA+ FM+ F +A++ AL K+ Sbjct: 196 YNPLYVHAGVGLGKTHLLHAAGHAA--REAGRRVIYLTADRFMYGFVNALKTQNALAFKE 253 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR IDLL++DD+QF+QGK IQ EF H LN+L+DS +QVV A+DRPP+ELE+LD R+RSR Sbjct: 254 RLRAIDLLILDDVQFIQGKSIQTEFGHTLNALIDSGRQVVVASDRPPTELEALDERVRSR 313 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L GG+ V +G D +R SIL RL ++ P ++ V +VAR +T +GR+L+GA Sbjct: 314 LAGGLVVEIGGLDEGLRASILSARLDAVRQSHPNFEVSPAVSAYVARAITANGRDLEGAV 373 Query: 376 NQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N+L+ + AP+ T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS R Sbjct: 374 NRLLAHATLTGAPV-TVETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSER 432 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R VV+PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EV Sbjct: 433 RTAAVVKPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDAVLGDEV 492 Query: 494 ELLKRLISE 502 ELLKR++ + Sbjct: 493 ELLKRMLQD 501 >gi|307942712|ref|ZP_07658057.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] gi|307773508|gb|EFO32724.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] Length = 494 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 229/486 (47%), Positives = 321/486 (66%), Gaps = 35/486 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V L+ ++G DV++SWF R+ V LSVPT FLK WI++ Y + + L++ E Sbjct: 15 VKKSLRAELGDDVFSSWFARVDLEEHADGTVRLSVPTRFLKQWIQSHYNDQLIGLWKREC 74 Query: 102 SRIQGVEILVRSVALP-SVEKTASSP---SITKLSPINTNI-----SKSP---------- 142 + +E+ VR P V T P S K P + +I S P Sbjct: 75 EGVHRIELTVRGAIRPRQVAATPRQPALGSAKKALPASADIRTGGASAEPNRVAAAQAAT 134 Query: 143 IILGKQTISP------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 LG+ + + G+ LD ++ F TF+EG SN++AL AA+ +A + V Sbjct: 135 AALGRGDSTSDNSKDVLQGAALDPKYTFDTFVEGESNQLALAAARQVAAGGA-----VTF 189 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF+HASVGLGKTHL+QA+A + R +V+YLTAE+FM+RF SA++ AL KD+ Sbjct: 190 NPLFLHASVGLGKTHLMQAVAAKA--RASGRKVLYLTAEHFMYRFVSALKAQSALAFKDT 247 Query: 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 LR IDLLLIDDMQFL GK +Q EFCH LN+L+D A+QV+ AADR PSEL+SLD R+RSRL Sbjct: 248 LRTIDLLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRAPSELDSLDDRVRSRL 307 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 GG+ V + D+ +R +IL +R+ +++K P + ++VL ++AR V +SGR+L+GA N Sbjct: 308 SGGLVVGIHEPDFVLRRNILDSRVILARKTYPNFEVPDQVLDYIARHVASSGRDLEGALN 367 Query: 377 QLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 +L+ + PI T E+A+ L LV + E +K++IEDIQR+V+KHYN+++ DLLS RR Sbjct: 368 RLIAHNQLTNQPI-TQEMAELTLRDLVRSSEPRKVKIEDIQRVVSKHYNVTKADLLSARR 426 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RT+VRPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRK+E++ + D L +E+E Sbjct: 427 TRTIVRPRQIAMYLAKVMTPRSLPEIGRRFGNRDHTTVLHAVRKIEELAKGDYALAQEIE 486 Query: 495 LLKRLI 500 LLKR++ Sbjct: 487 LLKRML 492 >gi|163849458|ref|YP_001637501.1| chromosomal replication initiation protein [Methylobacterium extorquens PA1] gi|218528084|ref|YP_002418900.1| chromosomal replication initiation protein [Methylobacterium chloromethanicum CM4] gi|163661063|gb|ABY28430.1| chromosomal replication initiator protein DnaA [Methylobacterium extorquens PA1] gi|218520387|gb|ACK80972.1| chromosomal replication initiator protein DnaA [Methylobacterium chloromethanicum CM4] Length = 501 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 222/489 (45%), Positives = 316/489 (64%), Gaps = 25/489 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ + +T V RL+ ++G DV+ASWF RL+ +V + L+VPT FLK+WI++ Y++ Sbjct: 19 VDLPAAWTRVKRRLRAELGEDVFASWFARLELETVDGGVARLTVPTRFLKSWIESHYIDR 78 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPS-------VEKTASSPSITKLSPINTNIS---KSP 142 + F+ E + +E+ VR + P+ + A+S + +L I T + P Sbjct: 79 VLTTFRAEADGVSRIEVGVRGPSGPARPSAGVPAKPNATSGPLNRLHAIATPAALQGPGP 138 Query: 143 II-------LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 +I G + G+PLD+R F+ F+ G SN +A AA+ IA DS G Sbjct: 139 MIETEIASPRGDSASVDLNGAPLDARLSFANFVVGRSNALAHAAAERIARSDSDGAL--- 195 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL++HA VGLGKTHLL A +A+ R+ RV+YLTA+ FM+ F +A++ AL K+ Sbjct: 196 YNPLYVHAGVGLGKTHLLHAAGHAA--REAGRRVIYLTADRFMYGFVNALKTQNALAFKE 253 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR IDLL++DD+QF+QGK IQ EF H LN+L+DS +QVV A+DRPP+ELE+LD R+RSR Sbjct: 254 RLRAIDLLILDDVQFIQGKSIQTEFGHTLNALIDSGRQVVVASDRPPTELEALDERVRSR 313 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L GG+ V +G D +R SIL RL ++ P ++ V +VAR +T +GR+L+GA Sbjct: 314 LAGGLVVEIGGLDEGLRASILSARLDAVRQSHPNFEVSPAVSAYVARAITANGRDLEGAV 373 Query: 376 NQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N+L+ + AP+ T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS R Sbjct: 374 NRLLAHATLTGAPV-TVETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSER 432 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R VV+PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EV Sbjct: 433 RTAAVVKPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDAVLGDEV 492 Query: 494 ELLKRLISE 502 ELLKR++ + Sbjct: 493 ELLKRMLQD 501 >gi|254558654|ref|YP_003065749.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens DM4] gi|254265932|emb|CAX21681.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens DM4] Length = 501 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 222/489 (45%), Positives = 316/489 (64%), Gaps = 25/489 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ + +T V RL+ ++G DV+ASWF RL+ +V + L+VPT FLK+WI++ Y++ Sbjct: 19 VDLPAAWTRVKRRLRAELGEDVFASWFARLELETVEGGVARLTVPTRFLKSWIESHYIDR 78 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPS-------VEKTASSPSITKLSPINTNIS---KSP 142 + F+ E + +E+ VR + P+ + A+S + +L I T + P Sbjct: 79 VLTTFRAEADGVSRIEVGVRGPSGPARPSAGVPAKPNATSGPLNRLHAIATPAALQGPGP 138 Query: 143 II-------LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 +I G + G+PLD+R F+ F+ G SN +A AA+ IA DS G Sbjct: 139 MIETEIASPRGDSASVDLNGAPLDARLSFANFVVGRSNALAHAAAERIARSDSDGAL--- 195 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL++HA VGLGKTHLL A +A+ R+ RV+YLTA+ FM+ F +A++ AL K+ Sbjct: 196 YNPLYVHAGVGLGKTHLLHAAGHAA--REAGRRVIYLTADRFMYGFVNALKTQNALAFKE 253 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR IDLL++DD+QF+QGK IQ EF H LN+L+DS +QVV A+DRPP+ELE+LD R+RSR Sbjct: 254 RLRAIDLLILDDVQFIQGKSIQTEFGHTLNALIDSGRQVVVASDRPPTELEALDERVRSR 313 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L GG+ V +G D +R SIL RL ++ P ++ V +VAR +T +GR+L+GA Sbjct: 314 LAGGLVVEIGGLDEGLRASILSARLDAVRQSHPNFEVSPAVSAYVARAITANGRDLEGAV 373 Query: 376 NQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N+L+ + AP+ T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS R Sbjct: 374 NRLLAHATLTGAPV-TVETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSER 432 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R VV+PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EV Sbjct: 433 RTAAVVKPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDAVLGDEV 492 Query: 494 ELLKRLISE 502 ELLKR++ + Sbjct: 493 ELLKRMLQD 501 >gi|170746452|ref|YP_001752712.1| chromosomal replication initiation protein [Methylobacterium radiotolerans JCM 2831] gi|170652974|gb|ACB22029.1| chromosomal replication initiator protein DnaA [Methylobacterium radiotolerans JCM 2831] Length = 498 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 218/480 (45%), Positives = 312/480 (65%), Gaps = 20/480 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + V RL+ ++G DV+ASWF RL+ +V L+VPT FLK+WI++ YL+ + Sbjct: 25 SAWARVKRRLRAELGEDVFASWFARLELETVAGGTARLTVPTRFLKSWIESHYLDRVLNT 84 Query: 97 FQEEHSRIQGVEILVRSVALP------SVEKT--ASSPSITKL----SPIN-TNISKSPI 143 F+ E I +E+ VR P V K AS P + +L +PI ++ +P Sbjct: 85 FKAEVEEIARIEVGVRGTGAPVRPVAAGVAKAGPASGP-LARLHATSAPIPVAAVAPTPE 143 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 G + + G+PLD+R F++F+ G SN +A AA+ +A +H NPL++HA Sbjct: 144 ARGGEAGGDLSGTPLDARLTFASFVIGRSNALAHAAAERVA---NHLGEGALYNPLYLHA 200 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHLL I +A+ R+ RV+YLTA+ FM+ F +A++ AL K+ LR IDLL Sbjct: 201 GVGLGKTHLLHGIGHAA--REAGRRVIYLTADRFMYGFVNALKTQSALAYKERLRGIDLL 258 Query: 264 LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 ++DD+QF+QGK IQ EF H +N+L+D+ +QVV A+DRPP+ELE+LD R+RSRL GG+ V Sbjct: 259 ILDDVQFIQGKSIQAEFGHTINALIDAGRQVVVASDRPPTELEALDERVRSRLGGGLVVE 318 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D +R SIL RLA + P +++ +V +VAR +T +GR+L+GA N+L+ + Sbjct: 319 ITALDEALRVSILSARLAAVRASHPGFDVSPQVAAYVARAITANGRDLEGAVNRLLAHAT 378 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR VV+PR Sbjct: 379 LTGTAVTMETAESAIRDLVKNREPKRIKIEDIQKLVASRYNVSRSDILSERRTAAVVKPR 438 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVELLKR++ + Sbjct: 439 QIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDSVLGDEVELLKRMLQD 498 >gi|75674200|ref|YP_316621.1| chromosomal replication initiation protein [Nitrobacter winogradskyi Nb-255] gi|123773117|sp|Q3SMV0|DNAA_NITWN RecName: Full=Chromosomal replication initiator protein DnaA gi|74419070|gb|ABA03269.1| chromosomal replication initiator protein, DnaA [Nitrobacter winogradskyi Nb-255] Length = 475 Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust. Identities = 223/473 (47%), Positives = 308/473 (65%), Gaps = 15/473 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG D+Y+SWF R+ SV V LSVPT FLK+WI+ Y E + +Q Sbjct: 9 WSRVKGRLRSTVGEDIYSSWFARMDLESVHGESVRLSVPTRFLKSWIQAHYAERVLSCWQ 68 Query: 99 EEHSRIQGVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS--PV 153 E + +++ VRS A P E A+ + S + + + + + Sbjct: 69 AELPDVHRIDLTVRSAMRCAAPVREAPATDARHPERSEGRNGVELKTVATAPASANHDAL 128 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 GSPLD R F +F+ G SN +A AA+ +AE +V NPL+IHA VGLGKTHLL Sbjct: 129 GGSPLDPRLTFQSFVTGRSNTLAHAAARQVAE--GRRGDSVMFNPLYIHAGVGLGKTHLL 186 Query: 214 QAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 QA+ NA +R RV+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+QF Sbjct: 187 QAVTWAGNAGTER----RVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQF 242 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V +G E Sbjct: 243 LQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEE 302 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 +R IL++R+ ++ ++ E VL ++A+ +T +GR+L+GA N+L+ A +T Sbjct: 303 LRLGILRSRVEAARVHHASFDVPEPVLDYLAKAITHNGRDLEGAINRLLAHSKLNAQPVT 362 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A+ + LV E ++++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+ Sbjct: 363 LEMAEREVRDLVRPQEPRRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYLA 422 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVELLKR + E Sbjct: 423 KTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVSKDTTLSDEVELLKRQLQE 475 >gi|27375941|ref|NP_767470.1| chromosomal replication initiation protein [Bradyrhizobium japonicum USDA 110] gi|38257550|sp|Q89W63|DNAA_BRAJA RecName: Full=Chromosomal replication initiator protein DnaA gi|27349079|dbj|BAC46095.1| chromosomal replication initiator protein [Bradyrhizobium japonicum USDA 110] Length = 470 Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust. Identities = 226/472 (47%), Positives = 312/472 (66%), Gaps = 18/472 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG D+Y SWF R+ V V LSVPT FLK+WI+ Y E + +Q Sbjct: 9 WSRVKGRLRSSVGEDIYTSWFARMDLEDVQDESVRLSVPTRFLKSWIQAHYAERVLSCWQ 68 Query: 99 EEHSRIQGVEILVRSVALP-SVEKTASSPSITKLSPINT--NISKSPIILGKQTISPVFG 155 E + +++ VRS P + K A +P T+ +P + + +P+ + G Sbjct: 69 AEMPEVHRIDLTVRSAVRPVAPPKEAPAPVETRRAPAPELRSTATAPVSANHDALG---G 125 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 SPLD R F++F+ G SN +A AA+ +AE V NPL+IHA VGLGKTHLLQA Sbjct: 126 SPLDPRLTFASFVIGRSNTLAHAAARQVAE--GRRGDPVMFNPLYIHAGVGLGKTHLLQA 183 Query: 216 I---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + N+ +R +V+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+QFLQ Sbjct: 184 VTWAGNSGNER----KVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQFLQ 239 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 GK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V +G E+R Sbjct: 240 GKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGEELR 299 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTA 390 ILK+R+A ++ ++ EEVL ++ART+T +GR+L+GA N+L+ P+ T Sbjct: 300 HGILKSRVAAARAHHATFDVPEEVLHYLARTITHNGRDLEGAINRLLAHSKLNNQPV-TL 358 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A+ + LV E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+K Sbjct: 359 EMAEREVRDLVRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYLAK 418 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D L +EVE LKR + E Sbjct: 419 TLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVSKDTALSEEVESLKRQLQE 470 >gi|92115634|ref|YP_575363.1| chromosomal replication initiation protein [Nitrobacter hamburgensis X14] gi|122990363|sp|Q1QS94|DNAA_NITHX RecName: Full=Chromosomal replication initiator protein DnaA gi|91798528|gb|ABE60903.1| chromosomal replication initiator protein DnaA [Nitrobacter hamburgensis X14] Length = 475 Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust. Identities = 220/475 (46%), Positives = 313/475 (65%), Gaps = 19/475 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG D+Y+SWF R+ SV V +SVPT FLK+WI+ Y E + +Q Sbjct: 9 WSRVKGRLRSTVGEDIYSSWFARMDLESVHGESVRMSVPTRFLKSWIQAHYAERVLACWQ 68 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP------ 152 E + ++++VRS A+ +P+ P + + ++ L +P Sbjct: 69 AELPDVHRIDLMVRS-AMRCAAPAKEAPAADPRRPEHGD-GRASTELKMVATAPASANHD 126 Query: 153 -VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + GSPLD R F++F+ G SN +A AA+ +AE ++ NPL+IHA VGLGKTH Sbjct: 127 ALGGSPLDPRLTFASFVTGRSNTLAHAAARQVAE--GRRGDSIMFNPLYIHAGVGLGKTH 184 Query: 212 LLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 LLQA+ NA +R +V+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+ Sbjct: 185 LLQAVTWAGNAGTER----KVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVIDDL 240 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V +G Sbjct: 241 QFLQGKSTQAEFCHTLNALIDAGRQVVVAADRPPSDLESLDDRVRSRLAGGLVVEMGSLG 300 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E+R ILK+R+ +++ ++ E VL ++A+ +T +GR+L+GA N+L+ A Sbjct: 301 EELRLGILKSRIEVARAHHASFSVPEPVLDYLAKAITHNGRDLEGAINRLLAHSKLNAQP 360 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+A+ + L+ E ++++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMY Sbjct: 361 VTLEMAEREVRDLIRPQEPRRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMY 420 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVELLKR + E Sbjct: 421 LAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVSKDTTLSDEVELLKRQLQE 475 >gi|90421529|ref|YP_529899.1| chromosomal replication initiation protein [Rhodopseudomonas palustris BisB18] gi|123395361|sp|Q21DF6|DNAA_RHOPB RecName: Full=Chromosomal replication initiator protein DnaA gi|90103543|gb|ABD85580.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris BisB18] Length = 473 Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust. Identities = 221/471 (46%), Positives = 306/471 (64%), Gaps = 13/471 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y + + +Q Sbjct: 9 WSRVKGRLRSSVGEDVYSSWFARMDLESVQPESVHLSVPTRFLKSWIQTHYSDRVLSCWQ 68 Query: 99 EEHSRIQGVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E ++ V++ VR+ A P+ + A + + + I T + G Sbjct: 69 AEMPQVHRVDLTVRTAMRCAAPAKDAPAHAEPRRDDGRPAPELRATAIAPVSATHEALGG 128 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 SPLD R F +F+ G SN +A AA+ +AE V NPL+IH+ VGLGKTHLLQA Sbjct: 129 SPLDPRLTFGSFVIGRSNTLAHAAARQVAE--GRRGDPVMFNPLYIHSGVGLGKTHLLQA 186 Query: 216 I---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + N+ +R +V+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+QFLQ Sbjct: 187 VTWAGNSGTER----KVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVIDDLQFLQ 242 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 GK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V + ++R Sbjct: 243 GKTTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDERVRSRLAGGLVVEMASLGEDLR 302 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 ILK+R+ ++ ++ VL ++ART+T +GR+L+GA N+L+ A +T E Sbjct: 303 LGILKSRVTAARAHHASFDVPLPVLEYLARTITHNGRDLEGAINRLLAHSKLNAQPVTLE 362 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ + LV E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+K Sbjct: 363 MAEREIRDLVRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYLAKT 422 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D L EVELLKR + E Sbjct: 423 LTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVAKDTALSDEVELLKRQLQE 473 >gi|91974483|ref|YP_567142.1| chromosomal replication initiation protein [Rhodopseudomonas palustris BisB5] gi|123722287|sp|Q13F98|DNAA_RHOPS RecName: Full=Chromosomal replication initiator protein DnaA gi|91680939|gb|ABE37241.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris BisB5] Length = 472 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/470 (45%), Positives = 305/470 (64%), Gaps = 12/470 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY+SWF R+ +V VHLSVPT FLK+WI+ Y E + +Q Sbjct: 9 WSRVKGRLRSSVGEDVYSSWFARMDLEAVQQESVHLSVPTRFLKSWIQTHYSEKVLTCWQ 68 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL--GKQTISPVFGS 156 E + +++ VRS +V K A +P+ + + GS Sbjct: 69 AEMPEVCRIDLTVRSPMRAAVTKEAPAPAEHRRDEHRPAADARSHAAAPAPSNHDALGGS 128 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD R F++F+ G SN +A AA+ +AE V NPL+IH+ VGLGKTHLLQA+ Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGLGKTHLLQAV 186 Query: 217 ---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 N+ +R +V+YLTAE FM+ F ++++ +L K++LR ID+L+IDD+QFLQG Sbjct: 187 TWAGNSGTER----KVLYLTAEKFMYGFVASLKTQTSLAFKEALRGIDVLVIDDLQFLQG 242 Query: 274 KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 K Q EFCH LN+L+D+ +QVV AADRPP++LESLD R+RSRL GG+ V + E+R Sbjct: 243 KTTQAEFCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEELRL 302 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 ILK+R+ ++ ++ + VL ++AR +T +GR+L+GA N+L+ A +T E+ Sbjct: 303 GILKSRVVAARTHHASFDVPQSVLEYLARAITHNGRDLEGAINRLLAHSKLNAQPVTLEM 362 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+K + Sbjct: 363 AEHEVRDLIRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYLAKTL 422 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T RS PEIGRRFG RDHTTVLHAVRK+E ++ D+TL EVE LKR + E Sbjct: 423 TLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDVTLSDEVESLKRQLQE 472 >gi|148251627|ref|YP_001236212.1| chromosomal replication initiation protein [Bradyrhizobium sp. BTAi1] gi|166201861|sp|A5E812|DNAA_BRASB RecName: Full=Chromosomal replication initiator protein DnaA gi|146403800|gb|ABQ32306.1| Chromosomal replication initiator protein [Bradyrhizobium sp. BTAi1] Length = 475 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 225/483 (46%), Positives = 315/483 (65%), Gaps = 35/483 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY SWF R+ +V VHLSVPT FLK+WI+ Y E + +Q Sbjct: 9 WSRVKGRLRSTVGEDVYTSWFARMDLEAVQDESVHLSVPTRFLKSWIQAHYAERVLSCWQ 68 Query: 99 EEHSRIQGVEILVRSV---ALPS-----------VEKTASSPSITKLSPINTNISKSPII 144 E + +++ VR+ A P+ E+ + P+ T+ +P+ T ++ S Sbjct: 69 AEMPEVHRIDLSVRTAMRCATPAKEAPVAVEARRAERGDAKPADTR-APVMTPVAASHDA 127 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 LG GSPLD R F++F+ G +N +A AA+ +A D V NPL+IHA Sbjct: 128 LG--------GSPLDPRLTFASFVVGRANTLAHAAARQVA--DGRRGDPVMFNPLYIHAG 177 Query: 205 VGLGKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 VGLGKTHLLQA+ NA +R +V+YLTAE FM+ F +A++ AL K++LR ID Sbjct: 178 VGLGKTHLLQAVTWAGNAGGER----KVLYLTAEKFMYGFVAALKSQTALAFKEALRGID 233 Query: 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 +L+IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ Sbjct: 234 VLVIDDLQFLQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLV 293 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + ++R ILK+R+A ++ ++ E VL ++AR++T +GR+L+GA N+L+ Sbjct: 294 VEMATLGEDLRLGILKSRVAAARAHHASFDVPEPVLDYLARSITHNGRDLEGAINRLLAH 353 Query: 382 HSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 P+ T ++A+ + LV E K+++IEDIQR+VA+ YN+SR+DLLS+RR VV Sbjct: 354 SKLNNQPV-TLDMAEREVRDLVRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVV 412 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQVAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVE LKR Sbjct: 413 RPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVGKDTTLNDEVEALKRQ 472 Query: 500 ISE 502 + + Sbjct: 473 LQD 475 >gi|39933081|ref|NP_945357.1| chromosomal replication initiation protein [Rhodopseudomonas palustris CGA009] gi|61212615|sp|Q6NDV3|DNAA_RHOPA RecName: Full=Chromosomal replication initiator protein DnaA gi|39652706|emb|CAE25445.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris CGA009] Length = 472 Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust. Identities = 225/480 (46%), Positives = 311/480 (64%), Gaps = 32/480 (6%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y + + +Q Sbjct: 9 WSRVKGRLRSSVGEDVYSSWFARMDLESVHDESVHLSVPTRFLKSWIQTHYSDKVLSCWQ 68 Query: 99 EEHSRIQGVEILVRS---VALPSVEKTA--------SSPSITKLSPINTNISKSPIILGK 147 E + V++ VRS A P+ E A PS + S T +S + LG Sbjct: 69 AELPEVNRVDLTVRSPVRCATPAKEVPAPVESRRDEQRPSAER-SNGATPVSANHDALG- 126 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 GSPLD R F++F+ G SN +A AA+ +AE V NPL+IH+ VGL Sbjct: 127 -------GSPLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGL 177 Query: 208 GKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GKTHLLQA+ NA +R +V+YLTAE FM+ F +A++ +L K++LR ID+L+ Sbjct: 178 GKTHLLQAVTWAGNAGTER----KVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLV 233 Query: 265 IDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPP++LESLD R+RSRL GG+ V + Sbjct: 234 IDDLQFLQGKTTQAEFCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEM 293 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 ++R IL++R+ ++ ++ + VL ++ART+T +GR+L+GA N+L+ Sbjct: 294 APLGEDLRLGILRSRVVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKL 353 Query: 385 --APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 P+ T E+A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPR Sbjct: 354 NNQPV-TLEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDLLSSRRTANVVRPR 412 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 QVAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVE LKR + E Sbjct: 413 QVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDTTLSDEVESLKRQLQE 472 >gi|115522031|ref|YP_778942.1| chromosomal replication initiation protein [Rhodopseudomonas palustris BisA53] gi|122298220|sp|Q07VS2|DNAA_RHOP5 RecName: Full=Chromosomal replication initiator protein DnaA gi|115515978|gb|ABJ03962.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris BisA53] Length = 474 Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust. Identities = 222/478 (46%), Positives = 306/478 (64%), Gaps = 26/478 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL+ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y E + +Q Sbjct: 9 WSRVKGRLRTTVGEDVYSSWFARMDLESVQQESVHLSVPTRFLKSWIQTHYSERVLSCWQ 68 Query: 99 EEHSRIQGVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-- 153 E + +++ VR+ A P+ E+ A + P + + L +PV Sbjct: 69 AEMPEVHRIDLTVRTAMRCAAPAKEQAAP------IEPRREDNRAAAHDLRVSATAPVSA 122 Query: 154 -----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 GSPLD R FS+F+ G SN +A AA+ +AE V NPL+IH+ VGLG Sbjct: 123 NHEALGGSPLDPRLTFSSFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGLG 180 Query: 209 KTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 KTHLLQA+ N+ ++R +V+YLTAE FM+ F +A++ AL K++LR ID+L+I Sbjct: 181 KTHLLQAVTWAGNSGLER----KVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVI 236 Query: 266 DDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 DD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V + Sbjct: 237 DDLQFLQGKTTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDERVRSRLAGGLVVEMA 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 E+R ILK+R+ ++ + VL ++A ++T +GR+L+GA N+L+ Sbjct: 297 SLGEELRLGILKSRVTAARAHHASFEVPLPVLEYLAHSITHNGRDLEGAINRLLAHSKLN 356 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 A +T E+A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQV Sbjct: 357 AQPVTLEMAEREVRDLIRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQV 416 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D L EVE LKR + E Sbjct: 417 AMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDAALSDEVESLKRQLQE 474 >gi|316931397|ref|YP_004106379.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris DX-1] gi|315599111|gb|ADU41646.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris DX-1] Length = 469 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 221/474 (46%), Positives = 309/474 (65%), Gaps = 20/474 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y + + +Q Sbjct: 6 WSRVKGRLRSSVGEDVYSSWFARMDLESVQDESVHLSVPTRFLKSWIQTHYSDKVLSCWQ 65 Query: 99 EEHSRIQGVEILVRSVA---LPSVEKTASSPS--ITKLSPINTNISKSPIILGKQTISPV 153 E + +++ VRS A P+ E A S + S + +P+ + Sbjct: 66 AELPDVNRIDVTVRSPARCSAPAKEAPAQVESRRDEQKSAAERSNGATPVSANHDALG-- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 GSPLD R F++F+ G SN +A AA+ +AE V NPL+IH+ VGLGKTHLL Sbjct: 124 -GSPLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGLGKTHLL 180 Query: 214 QAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 QA+ NA +R +V+YLTAE FM+ F +A++ +L K++LR ID+L+IDD+QF Sbjct: 181 QAVTWAGNAGSER----KVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQF 236 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V + + Sbjct: 237 LQGKTTQAEFCHTLNALIDAGRQVVVAADRPPSDLESLDERVRSRLAGGLVVEMAPLGED 296 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APIL 388 +R IL++R+ ++ ++ + VL ++ART+T +GR+L+GA N+L+ P+ Sbjct: 297 LRLGILRSRVVAARAHHVSFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPV- 355 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL Sbjct: 356 TLEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDLLSSRRTANVVRPRQVAMYL 415 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVE LKR + E Sbjct: 416 AKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDNTLSDEVESLKRQLQE 469 >gi|182677005|ref|YP_001831151.1| chromosomal replication initiation protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182632888|gb|ACB93662.1| chromosomal replication initiator protein DnaA [Beijerinckia indica subsp. indica ATCC 9039] Length = 510 Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust. Identities = 228/493 (46%), Positives = 321/493 (65%), Gaps = 29/493 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 L VN + + + RL+ ++G DV+ASWF RL+ V LSVPT FLK+WI++ Y Sbjct: 26 LGVNKDEAWERICRRLRAELGEDVFASWFGRLELDQVADGTAFLSVPTKFLKSWIQSHYT 85 Query: 91 ETITKLFQEEHSRIQGVEILVRSVA-----LPSVEKTASSPSITK------LSPINTNIS 139 + I + +E + + I VR + P+ + +SP + SP+ + Sbjct: 86 DKILAILADEFGNAKRISIGVRPTSRVGRSFPADAERDNSPENAEPAARPARSPVGAEVK 145 Query: 140 --KSPIILGKQTISPVF------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 P K+T+ + GSPLD R F+ F+ G SN++A AA+ IA D + Sbjct: 146 FFTGP---DKKTVREISDAEALNGSPLDRRLSFANFLVGRSNQLAFAAAKGIAAADPN-- 200 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIA-NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 + NPL++HASVGLGKTHLLQAIA +A I ++ RV+YLTAE FM+ F +A++ A Sbjct: 201 DPLLSNPLYLHASVGLGKTHLLQAIAHDAMIMKR---RVIYLTAEKFMYGFVAALKAQTA 257 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + K+ LR ID+L+IDD+QFLQGK IQ EFCH LN+L+D+ +Q+V AADRPP++LESLD Sbjct: 258 IAFKEKLRTIDILVIDDVQFLQGKSIQQEFCHTLNALIDAGRQIVIAADRPPADLESLDE 317 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+RSRL GG+ V +G D +R IL+ R+ ++ P ++ + V+ +VA + T+GR+ Sbjct: 318 RVRSRLAGGLCVEMGALDEALRIKILETRIGAAKLVHPYFDVPQPVIAYVASVIQTNGRD 377 Query: 371 LDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 LDGA N+L+ S + LT EIA+ + LV T E K+++IE+IQ++VA H+N+SR D+ Sbjct: 378 LDGAVNRLLAHASLTSVPLTIEIAETAIRDLVRTKEPKRVKIEEIQKLVASHFNVSRADI 437 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 LS+RR VVRPRQ+AMYLSKIMT RS PEIGRRFG RDHTTVLHAVRK+E + TD L Sbjct: 438 LSSRRTANVVRPRQIAMYLSKIMTLRSLPEIGRRFGGRDHTTVLHAVRKIENLASTDNHL 497 Query: 490 KKEVELLKRLISE 502 +E+ELLKR++ E Sbjct: 498 SEELELLKRMLME 510 >gi|146337176|ref|YP_001202224.1| chromosomal replication initiation protein [Bradyrhizobium sp. ORS278] gi|166201862|sp|A4YJ98|DNAA_BRASO RecName: Full=Chromosomal replication initiator protein DnaA gi|146189982|emb|CAL73974.1| Chromosomal replication initiator protein dnaA [Bradyrhizobium sp. ORS278] Length = 476 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 224/483 (46%), Positives = 312/483 (64%), Gaps = 34/483 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY SWF R+ +V VHLSVPT FLK+WI+ Y E + +Q Sbjct: 9 WSRVKGRLRSTVGEDVYTSWFARMDLEAVQDESVHLSVPTRFLKSWIQAHYAERVLSAWQ 68 Query: 99 EEHSRIQGVEILVRSV---ALPSVEKTAS-----------SPSITKLSPINTNISKSPII 144 E + +++ VR+ A P+ E A+ P +P+ T ++ S Sbjct: 69 AEMPEVHRIDLSVRTAMRCATPAKEAPAAVEARRPERSDAKPVSDARAPVMTPVAASHDA 128 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 LG GSPLD R F++F+ G +N +A AA+ +A D V NPL+IHA Sbjct: 129 LG--------GSPLDPRLTFASFVVGRANTLAHAAARQVA--DGRRGDPVMFNPLYIHAG 178 Query: 205 VGLGKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 VGLGKTHLLQA+ NA +R +V+YLTAE FM+ F +A++ AL K++LR ID Sbjct: 179 VGLGKTHLLQAVTWAGNAGGER----KVLYLTAEKFMYGFVAALKSQTALAFKEALRGID 234 Query: 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 +L+IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ Sbjct: 235 VLVIDDLQFLQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLV 294 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + ++R ILK+R+A ++ ++ E VL ++AR++T +GR+L+GA N+L+ Sbjct: 295 VEMATLGEDLRLGILKSRVAAARAHHASFDVPEAVLDYLARSITHNGRDLEGAINRLLAH 354 Query: 382 HSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 P+ T ++A+ + LV E K+++IEDIQR+VA+ YN+SR+DLLS+RR VV Sbjct: 355 SKLNNQPV-TLDMAEREVRDLVRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVV 413 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQVAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D+ L EVE LKR Sbjct: 414 RPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVGKDVALNDEVESLKRQ 473 Query: 500 ISE 502 + + Sbjct: 474 LQD 476 >gi|192288434|ref|YP_001989039.1| chromosomal replication initiation protein [Rhodopseudomonas palustris TIE-1] gi|226735837|sp|B3QJZ9|DNAA_RHOPT RecName: Full=Chromosomal replication initiator protein DnaA gi|192282183|gb|ACE98563.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris TIE-1] Length = 472 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 221/483 (45%), Positives = 308/483 (63%), Gaps = 38/483 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y + + +Q Sbjct: 9 WSRVKGRLRSSVGEDVYSSWFARMDLESVHDESVHLSVPTRFLKSWIQTHYSDKVLSCWQ 68 Query: 99 EEHSRIQGVEILVRS--------------VALPSVEKTASSPSITKLSPINTNISKSPII 144 E + V++ VRS V E+ S+ +P++ N Sbjct: 69 AELPEVNRVDLTVRSPVRCAAPAKEAPAPVESRRDEQRPSAERSNGATPVSANHDA---- 124 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 LG GSPLD R F++F+ G SN +A AA+ +AE V NPL+IH+ Sbjct: 125 LG--------GSPLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSG 174 Query: 205 VGLGKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 VGLGKTHLLQA+ NA +R +V+YLTAE FM+ F +A++ +L K++LR ID Sbjct: 175 VGLGKTHLLQAVTWAGNAGTER----KVLYLTAEKFMYGFVAALKTQTSLAFKEALRGID 230 Query: 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 +L+IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPP++LESLD R+RSRL GG+ Sbjct: 231 VLVIDDLQFLQGKTTQAEFCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLV 290 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + ++R IL++R+ ++ ++ + VL ++ART+T +GR+L+GA N+L+ Sbjct: 291 VEMAPLGEDLRLGILRSRVVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAH 350 Query: 382 HSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 P+ T E+A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VV Sbjct: 351 SKLNNQPV-TLEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDLLSSRRTANVV 409 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQVAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVE LKR Sbjct: 410 RPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDTTLSDEVESLKRQ 469 Query: 500 ISE 502 + E Sbjct: 470 LQE 472 >gi|323137249|ref|ZP_08072328.1| chromosomal replication initiator protein DnaA [Methylocystis sp. ATCC 49242] gi|322397607|gb|EFY00130.1| chromosomal replication initiator protein DnaA [Methylocystis sp. ATCC 49242] Length = 500 Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust. Identities = 227/491 (46%), Positives = 319/491 (64%), Gaps = 24/491 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V +S + V RL+ ++G VY SWF RL+ V +HL+VPT FLK+W+++ Y Sbjct: 13 ISVEDQSRWERVRQRLRAELGDAVYNSWFTRLELERVDDKSMHLTVPTKFLKSWVQSHYA 72 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPS------VEKTASSPS---ITKLSPINTNIS-- 139 I E + ++ V I VRS A + E ++P+ K SP + S Sbjct: 73 PRIKARVANEFAAVERVVIDVRSSARKAKVREGAAEHENNAPASLFADKASPAPSQESID 132 Query: 140 -----KSPIILGKQTISPVF-GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + +T + F GSPLD R FSTF+ G SN++A AA +AE G Sbjct: 133 GAASFRRAARSAPRTDNETFIGSPLDRRLSFSTFLVGPSNQLAYAAACRVAEARP-GDAP 191 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 + NPL+ HA+VGLGKTHLLQA+A+AS + R +YLTAE FM F S++ ++ Sbjct: 192 I-FNPLYAHAAVGLGKTHLLQALAHASNDNR--RRAIYLTAERFMSGFVSSLNAQTSIAF 248 Query: 254 KDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 K+ LR ID+L+IDD+QFLQGK IQ EFCH LN+L+D+ +QVV AADRPPSELE+LD R+ Sbjct: 249 KERLRAIDMLIIDDVQFLQGKSIQQEFCHTLNALIDAGRQVVVAADRPPSELETLDERVL 308 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR +GG+ V +G D +R +L R+A +Q+ P ++ EV+ +VART+ T+GR+L+G Sbjct: 309 SRFKGGLCVDIGPLDESLRMKMLNARIAAAQESQPGFHVPPEVVAYVARTIVTNGRDLEG 368 Query: 374 AFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 A N+L+ + AP LT E A+ + LV + + ++++I+DIQ++VA HYNISR D+LS Sbjct: 369 AVNRLLAHVTLNGAP-LTIETAETAIRDLVRSQDPRRVKIDDIQKLVASHYNISRADILS 427 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 +RR VVRPRQ+AMYLSK+MT RS PEIGRRFG RDHTTVLHAVRK+E+++ D +L + Sbjct: 428 SRRTANVVRPRQIAMYLSKVMTLRSLPEIGRRFGGRDHTTVLHAVRKIEELVSKDKSLAE 487 Query: 492 EVELLKRLISE 502 +ELLKR++SE Sbjct: 488 VIELLKRILSE 498 >gi|170738368|ref|YP_001767023.1| chromosomal replication initiation protein [Methylobacterium sp. 4-46] gi|168192642|gb|ACA14589.1| chromosomal replication initiator protein DnaA [Methylobacterium sp. 4-46] Length = 494 Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust. Identities = 217/486 (44%), Positives = 312/486 (64%), Gaps = 18/486 (3%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 R + + + V RL+ ++G DV+ASWF RL+ V L+VPT FLK+WI++ Sbjct: 15 RGAGGDVAAAWQRVKRRLRAELGEDVFASWFARLELQDVAGGTARLTVPTRFLKSWIESH 74 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL-----SPINTNISKSPI 143 YL+ + F+ E I G+E+ VR P+ ++ S K +P + + I Sbjct: 75 YLDRVLATFRSEADGIDGIEVGVRGPMAPARAAPGAAASAPKPASPIRTPGAAPAAPATI 134 Query: 144 IL-----GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 L ++ + G+PLD+R F TF+ G SN +A AA+ +A + G NP Sbjct: 135 ELPDADRAQRGEGDLSGAPLDARLTFQTFVVGRSNALAHAAAERVAGHEGSGPI---YNP 191 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+ HA VGLGKTHLL AI +A+ ++ RV+YLTA+ FM+ F +A++ AL K+ LR Sbjct: 192 LYFHAGVGLGKTHLLHAIGHAA--KEAGRRVIYLTADRFMYGFVNALKTQNALAFKERLR 249 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L++DD+QF+QG+ IQ EF H LN+L+D+ +QVVAAADRPP+ELESLD R+RSRL G Sbjct: 250 AIDVLILDDVQFIQGRSIQAEFGHTLNALIDAGRQVVAAADRPPTELESLDERVRSRLAG 309 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ V +G D +R +IL++RL + P ++ V +VA+ +T +GR+L+GA N+L Sbjct: 310 GLVVEIGTLDEALRATILQSRLEAVRVSHPGFEVSPAVAEYVAKAITANGRDLEGAVNRL 369 Query: 379 VFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 + + AP+ T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR Sbjct: 370 LAHATLTGAPV-TLETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERRTA 428 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 VV+PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVELL Sbjct: 429 AVVKPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKAIGEDSALSDEVELL 488 Query: 497 KRLISE 502 KR++ + Sbjct: 489 KRMLQD 494 >gi|86747128|ref|YP_483624.1| chromosomal replication initiation protein [Rhodopseudomonas palustris HaA2] gi|123004838|sp|Q2J497|DNAA_RHOP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|86570156|gb|ABD04713.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris HaA2] Length = 472 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 217/470 (46%), Positives = 306/470 (65%), Gaps = 12/470 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY+SWF R+ +V VHLSVPT FLK+WI+ Y + + +Q Sbjct: 9 WSRVKGRLRSSVGEDVYSSWFARMDLEAVQPESVHLSVPTRFLKSWIQTHYSDKVLTCWQ 68 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN--TNISKSPIILGKQTISPVFGS 156 E + +++ VRS +V K A++P + + T + + GS Sbjct: 69 AELPEVCRIDLTVRSPMRAAVAKEAAAPVEHRRAEHRPATETRSHATVPASSNHDALGGS 128 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD R F++F+ G SN +A AA+ +AE V NPL+IH+ VGLGKTHLLQA+ Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGLGKTHLLQAV 186 Query: 217 ---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 N I+R +V+YLTAE FM+ F +A++ +L K++LR ID+L+IDD+QFLQG Sbjct: 187 TWAGNTGIER----KVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQG 242 Query: 274 KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 K Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V + ++R Sbjct: 243 KTTQAEFCHTLNALIDAGRQVVVAADRPPSDLESLDERVRSRLAGGLVVEMAPLGEDLRL 302 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 ILK+R+ ++ ++ VL ++AR +T +GR+L+GA N+L+ A +T E+ Sbjct: 303 GILKSRVVAARAHHASFDVPAPVLEYLARAITHNGRDLEGAINRLLAHSKLNAQPVTLEM 362 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+K + Sbjct: 363 AEHEVRDLIRPQEPKRIKIEDIQRIVARQYNVSRSDLLSSRRTANVVRPRQVAMYLAKTL 422 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EV+ LKR + E Sbjct: 423 TLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDTTLSDEVDSLKRQLQE 472 >gi|296448171|ref|ZP_06890069.1| chromosomal replication initiator protein DnaA [Methylosinus trichosporium OB3b] gi|296254302|gb|EFH01431.1| chromosomal replication initiator protein DnaA [Methylosinus trichosporium OB3b] Length = 497 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 224/482 (46%), Positives = 314/482 (65%), Gaps = 30/482 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V RL+ ++G VY SWF RL+ +V + L+VPT FLK+WI++ Y + I E Sbjct: 25 VRGRLRAELGDAVYNSWFARLELETVKDGALLLTVPTKFLKSWIQSHYADRIKTRLCAEF 84 Query: 102 SRIQGVEILVRSVAL-------------PSVEKTA--SSPS---ITKLSP-INTNISKSP 142 + V I VRS + P+ E++A + P+ + K P + ++ +P Sbjct: 85 AGTDRVVIDVRSPSRRARARDADAAVVAPTAERSAVEAPPAPVIVEKPEPHVRSSGRAAP 144 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + G GSPLD R FSTF+ G SN++A AA +A+ + + NPL+ H Sbjct: 145 RVEGDH----FNGSPLDRRLSFSTFLVGPSNQLAYAAACRVADARAGDHPL--FNPLYTH 198 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 A+VGLGKTHLLQA+A A+ + RV+YLTAE FM F SA+ ++ K+ LRNID+ Sbjct: 199 AAVGLGKTHLLQAVARAANDNR--RRVIYLTAEKFMSGFVSALTAQTSMAFKEKLRNIDV 256 Query: 263 LLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+IDD+QFLQGK IQ EFCH LN+L+D KQVV AADRPPS+LE+LD R+ SR +GG+ V Sbjct: 257 LIIDDVQFLQGKSIQQEFCHTLNALIDDGKQVVVAADRPPSDLETLDERVLSRFKGGLCV 316 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 +G D E+R IL+ R+A +Q+ P ++ V+ +VA+T+ T+GR+L+GA N+L+ Sbjct: 317 DIGPLDEELRVKILEARIAAAQEAQPSFHVPPAVVSYVAKTIVTNGRDLEGAVNRLLAHS 376 Query: 383 SF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + AP L E A+ + LV E K+++I+DIQ++VA HYNISR D+LS+RR VVR Sbjct: 377 TLNGAP-LCVETAENAIRDLVRNHEPKRVKIDDIQKLVASHYNISRADILSSRRTANVVR 435 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRKVE++ D +L + +ELLKR++ Sbjct: 436 PRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKVEELAAKDRSLAEVIELLKRIL 495 Query: 501 SE 502 +E Sbjct: 496 AE 497 >gi|220920055|ref|YP_002495356.1| chromosomal replication initiation protein [Methylobacterium nodulans ORS 2060] gi|219944661|gb|ACL55053.1| chromosomal replication initiator protein DnaA [Methylobacterium nodulans ORS 2060] Length = 499 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 212/472 (44%), Positives = 303/472 (64%), Gaps = 17/472 (3%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V RL+ ++G DV+ASWF RL+ V L+VPT FLK+WI++ YL+ + F+ E Sbjct: 34 VKRRLRAELGEDVFASWFARLELQEVSGGTARLTVPTRFLKSWIESHYLDRVLATFRSEA 93 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL---------GKQTISP 152 ++G+E+ VR P+ + ++ S G+ + Sbjct: 94 DGVEGIEVGVRGPMAPARAAPVGMAPAAPKAATPVRLAASAPAAAETAEADRAGRSEAAD 153 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + G+PLD R F +F+ G SN +A AA+ +A D G NPL+ HA VGLGKTHL Sbjct: 154 LSGAPLDPRLTFQSFVVGRSNALAHAAAERVAAHDGGGPV---YNPLYFHAGVGLGKTHL 210 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI +A+ ++ RV+YLTA+ FM+ F +A++ AL K+ LR ID+L++DD+QF+Q Sbjct: 211 LHAIGHAA--KEVGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDVLILDDVQFIQ 268 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 G+ IQ EF H LN+L+D+ +QVVAAADRPP+ELESLD R+RSRL GG+ V +G D +R Sbjct: 269 GRSIQAEFGHTLNALIDAGRQVVAAADRPPTELESLDERVRSRLAGGLVVEIGTLDEALR 328 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTA 390 +IL++RL + P ++ V +VA+ +T +GR+L+GA N+L+ + AP+ T Sbjct: 329 ATILQSRLEAVRATHPAFEVSPAVAEYVAKAITANGRDLEGAVNRLLAHATLTGAPV-TL 387 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR VV+PRQ+AMYLSK Sbjct: 388 ETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERRTAAVVKPRQIAMYLSK 447 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 ++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVELLKR++ + Sbjct: 448 VLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKAIGEDSALCDEVELLKRMLQD 499 >gi|217976201|ref|YP_002360348.1| chromosomal replication initiation protein [Methylocella silvestris BL2] gi|217501577|gb|ACK48986.1| chromosomal replication initiator protein DnaA [Methylocella silvestris BL2] Length = 506 Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust. Identities = 221/488 (45%), Positives = 305/488 (62%), Gaps = 32/488 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + RL+ VG DV++SWF RL+ S+ LSVPT FLK+WI++ Y E + E Sbjct: 24 ICRRLRADVGEDVFSSWFGRLELDSLSDGTAALSVPTKFLKSWIQSHYAEKLLAALTSEF 83 Query: 102 SRIQGVEILVRSVALPSV----------EKTAS--SPSITKLSPINTNISKSPIILGKQT 149 ++ + + +RS P + E++ S S K + S + ++ Sbjct: 84 PMVKRLVVTIRSSNRPPLGAPARADIEDEESGSNLSQGARKTPTQDAAASGARGFAAQRP 143 Query: 150 ISP-------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 P + GSPLD R FSTF G SN++AL AAQ +A + Sbjct: 144 YEPQTAKTRAEGEADIIAGSPLDGRLTFSTFAAGRSNQLALAAAQRVAAATPE--ERLPY 201 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL++HASVGLGKTHLLQA+A+ + + + RV+YLTAE FM+ F SA++ A+ K+ Sbjct: 202 NPLYLHASVGLGKTHLLQAVAH--MAQTMSRRVIYLTAERFMYGFVSALKAQTAIAFKEK 259 Query: 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 LR ID+L+IDD+QFLQGK IQ EFCH LN+L+D+ +Q+V AADRPPSELESLD R+RSRL Sbjct: 260 LRGIDILVIDDIQFLQGKSIQQEFCHTLNALIDAHRQIVIAADRPPSELESLDERVRSRL 319 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 GG+ V +G D ++R IL+ R+A ++ P + V VA + T+GR+LDGA N Sbjct: 320 AGGLCVEIGGLDEQLRVRILEGRIAAAKHAHPNFEVPSAVTAFVAHAIQTNGRDLDGAVN 379 Query: 377 QLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 +L+ S AP L E A+ + LV + K+++IEDIQ++VA H+N+SR D+LS+RR Sbjct: 380 RLLAHASLNGAP-LEVETAELAIRDLVRAHDPKRIKIEDIQKLVATHFNVSRADILSSRR 438 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 VVRPRQ+AMYLSK +T RS PEIGRRFG RDHTTVLHAVRK++ + D L +E+E Sbjct: 439 TANVVRPRQIAMYLSKALTLRSLPEIGRRFGGRDHTTVLHAVRKIDGLAAKDGALSEEIE 498 Query: 495 LLKRLISE 502 LLKR++ E Sbjct: 499 LLKRMLME 506 >gi|154243959|ref|YP_001414917.1| chromosomal replication initiation protein [Xanthobacter autotrophicus Py2] gi|226735865|sp|A7IB67|DNAA_XANP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|154158044|gb|ABS65260.1| chromosomal replication initiator protein DnaA [Xanthobacter autotrophicus Py2] Length = 506 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 216/496 (43%), Positives = 297/496 (59%), Gaps = 39/496 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V RL+ ++G + + SWF R+ + + V LSVPT FLK+WI+ YL I ++ EE Sbjct: 14 VRQRLREEIGEEKFTSWFARMDLDKLTADAVQLSVPTRFLKSWIQENYLPRIADIWAEES 73 Query: 102 SRIQGVEILVR-SVALPSVEKTASSPSI----TKLSPINTNISKSPIILGKQTISP---- 152 + V++ VR + A P K + + T + +T + I G+ T + Sbjct: 74 GAKRRVDLAVRNAFARPVALKANTVREVVTERTDMHSGDTRQQSARISDGRSTDARGADG 133 Query: 153 -------------------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 GSPLD+R F TF+ G SN +A AA+ +AE Sbjct: 134 RGSDARAVEPRAAAAALSDAVAGDVASGSPLDARLTFETFVVGKSNSLAFAAAKQVAE-S 192 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 + G V NPL++HA+VGLGKTHLLQAIA A R YLTAE FM+ F +A++ Sbjct: 193 APGSAPV-FNPLYLHAAVGLGKTHLLQAIARAGAV--GGRRTTYLTAERFMYGFVAALKT 249 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + A+ KD+LR ID L+IDD+QFL+G +Q EFCH LN+LLD +QVV AAD P ELE Sbjct: 250 HSAIAFKDALRTIDTLVIDDLQFLKGNNLQQEFCHTLNALLDGGRQVVVAADCLPGELEH 309 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 LD R+RSRL GG+ V L + ++R ILK R ++ P + VL +AR+V S Sbjct: 310 LDERVRSRLAGGLVVELAALEEDLRLEILKARYQTLTEQHPGFAVPAPVLEFLARSVGQS 369 Query: 368 GRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 GR+LDGA N+L+ F +T E+A+ + L+ + K++R++DI R+VAKHYN+SR Sbjct: 370 GRDLDGALNKLLAFNQLTGEPVTLEMAENAVKDLIRPTDPKRVRVDDILRVVAKHYNVSR 429 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 DLLS RR TVV+PRQ+AMYL+K +T RS PEIGRRFG RDHTTVLHAVRK++ ++ D Sbjct: 430 ADLLSQRRTATVVKPRQIAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIDGLVNAD 489 Query: 487 ITLKKEVELLKRLISE 502 L +E+E+LKRL E Sbjct: 490 RALAEEIEVLKRLALE 505 >gi|312112796|ref|YP_004010392.1| chromosomal replication initiator protein DnaA [Rhodomicrobium vannielii ATCC 17100] gi|311217925|gb|ADP69293.1| chromosomal replication initiator protein DnaA [Rhodomicrobium vannielii ATCC 17100] Length = 497 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 205/483 (42%), Positives = 295/483 (61%), Gaps = 14/483 (2%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + + E + + SRL+ ++G DV+ SWF R++ S +V +SVPT FL+ W+++ Y + Sbjct: 14 QTSIEHKWRRIQSRLRAELGEDVFTSWFGRVELDSCDGRVVQVSVPTKFLRNWLQSHYSD 73 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS-----------ITKLSPINTNISK 140 + E + + +E VR L VEK AS + T S + + Sbjct: 74 KLLACCGTELNGVNRLEFRVRQPHLAPVEKKASPTASIAESTTPKAQTTPSSTVPLRVIS 133 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +P+ G+ + GSPLD R+ F +F+ GS NR+A AA +AE S ++ NPL+ Sbjct: 134 TPVRDGRTGLEGFEGSPLDPRYTFQSFVVGSPNRLAHAAAFQVAE--STPEQPLKYNPLY 191 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 IHA VG+GKTHLL AIA R PN +V+YLTAE FM+ FA A++ A K+ LR I Sbjct: 192 IHARVGMGKTHLLHAIAWEMKARNPNAKVLYLTAERFMYSFAEALQTRDAPAFKEKLRTI 251 Query: 261 DLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 DLL+IDDM+FLQG+ Q EFCH LNSL+D KQVV AAD P LES D R+RSRL GG+ Sbjct: 252 DLLIIDDMEFLQGRTFQQEFCHTLNSLIDGGKQVVVAADCAPLLLESFDARMRSRLSGGL 311 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + D+++R IL+ R A + +VL ++A +T +GREL+GA +L Sbjct: 312 VAEMSALDFDLRLKILQRRAAEKISLSRGFEVPGDVLEYLATQLTENGRELEGAITRLHA 371 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 +T + A+ + L+ + E K+++I+DI R+VAKHY + R DLLS+RR +++V Sbjct: 372 TWQLTGEKVTVDAAENTIGDLIRSKEPKRVKIDDILRIVAKHYGVQRGDLLSSRRNQSIV 431 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+ MYL+K +T RS PEIGRRFG RDHTTVLHA+RK+E + + D LK E++ L R+ Sbjct: 432 RPRQIGMYLAKTLTSRSLPEIGRRFGGRDHTTVLHAIRKIESLKQADGVLKDELDSLSRM 491 Query: 500 ISE 502 + + Sbjct: 492 LKD 494 >gi|218506736|ref|ZP_03504614.1| chromosomal replication initiation protein [Rhizobium etli Brasil 5] Length = 276 Score = 389 bits (998), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/256 (71%), Positives = 215/256 (83%) Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVA 296 FMWR A+AIRDN AL LKDSLRNIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV Sbjct: 1 FMWRVATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVV 60 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 AADR P ELESLDPR+RSRLQGGV++ L DYEMR ILK RLA +++EDP L I ++ Sbjct: 61 AADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRRLAAARQEDPSLEIPADL 120 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQR 416 L HVAR +T SGREL+GAFNQL+FR SF P L+ E DELL+HLV +GE +++RIEDIQR Sbjct: 121 LQHVARNITASGRELEGAFNQLIFRRSFEPNLSIERVDELLAHLVGSGEPRRVRIEDIQR 180 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 +VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAV Sbjct: 181 IVARHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAV 240 Query: 477 RKVEKMLETDITLKKE 492 RK+E+++ D L E Sbjct: 241 RKIEELISGDTKLSHE 256 >gi|158422638|ref|YP_001523930.1| chromosomal replication initiation protein [Azorhizobium caulinodans ORS 571] gi|158329527|dbj|BAF87012.1| chromosomal replication initiator protein [Azorhizobium caulinodans ORS 571] Length = 444 Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust. Identities = 210/451 (46%), Positives = 294/451 (65%), Gaps = 28/451 (6%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE-KTASSP-- 126 + V LSVPT FLKAWI++ YL+ +++L++EE + V+++VR+ +V K A++P Sbjct: 4 SAVQLSVPTRFLKAWIQDHYLDRLSELWREESGTTR-VDLVVRTAVARTVPLKAANAPRE 62 Query: 127 -------------SITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + + P+ + + Q GSPLD+R F TF+ G SN Sbjct: 63 IVSERPVVAPTAAAPARSQPVAAPTAPA----SAQPADVAAGSPLDARLTFETFVVGKSN 118 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 +A AA+ +AE NPL++HA+VGLGKTHLLQA+A A R RVVYLT Sbjct: 119 TLAHAAARQVAEAVPGAAPL--FNPLYMHAAVGLGKTHLLQAVAWAGAAR--GRRVVYLT 174 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQ 293 AE FM+ F +A++ + A+ KD+LR+ID L+IDD+QFL GK +Q EFCH LN+L+D+ +Q Sbjct: 175 AERFMYGFVAALKSHAAIAFKDALRSIDTLVIDDLQFLTGKNMQQEFCHTLNALMDAGRQ 234 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 VV AADRPPSEL++LD R+RSRL GG+ V L + ++R ILK R ++ + Sbjct: 235 VVVAADRPPSELDALDDRVRSRLAGGLVVELAPLEEDLRAQILKTRSVSLSEQHRGFAVP 294 Query: 354 EEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTAEIADELLSHLVNTGETKKMRI 411 VL +AR V TSGR+LDGA N+L V + + P+ T E+A+ + LV + K++R+ Sbjct: 295 SAVLEFLARHVGTSGRDLDGALNKLLAVNKLTGEPV-TLEMAETAVKDLVRPCDPKRVRV 353 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 +DI R+VAKHYN++R DLLS RR VV+PRQ+AMYL+K +T RS PEIGRRFG RDHTT Sbjct: 354 DDILRVVAKHYNVTRADLLSQRRTANVVKPRQIAMYLAKTLTLRSLPEIGRRFGGRDHTT 413 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLISE 502 VLHAVRK++ ++ TD L E+E LKRL++E Sbjct: 414 VLHAVRKIDGLIATDRALADEIETLKRLVAE 444 >gi|218679350|ref|ZP_03527247.1| chromosomal replication initiation protein [Rhizobium etli CIAT 894] Length = 270 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 185/255 (72%), Positives = 210/255 (82%), Gaps = 3/255 (1%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 SP+FGSPLDSRF F TF+EGSSNRVAL AA++IAE G VR NPLFIH++VGLGKT Sbjct: 3 SPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTIAEA---GSGAVRFNPLFIHSAVGLGKT 59 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLLQAIANA+++ LRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDLL+IDDMQF Sbjct: 60 HLLQAIANAAVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQF 119 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ DYE Sbjct: 120 LQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYE 179 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 MR ILK RLA ++ EDP L I ++L HVAR +T SGREL+GAFNQLVFR SF P L+ Sbjct: 180 MRLEILKRRLAAARLEDPSLEIPADLLQHVARNITASGRELEGAFNQLVFRRSFEPNLSI 239 Query: 391 EIADELLSHLVNTGE 405 E DELL+HLV +G+ Sbjct: 240 ERVDELLAHLVGSGD 254 >gi|300021540|ref|YP_003754151.1| chromosomal replication initiator protein DnaA [Hyphomicrobium denitrificans ATCC 51888] gi|299523361|gb|ADJ21830.1| chromosomal replication initiator protein DnaA [Hyphomicrobium denitrificans ATCC 51888] Length = 506 Score = 366 bits (940), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 200/514 (38%), Positives = 313/514 (60%), Gaps = 27/514 (5%) Query: 5 EVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKF 64 + A + V A+ T V+ +E + V + L+ Q+G ++Y+SWF+ L+F Sbjct: 2 QAAKTAEAQGVSGAQGTAVVETATGSVEGRGQK----VRAMLRAQLGEEIYSSWFKSLEF 57 Query: 65 HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTAS 124 +V +SVP F++ WI+ Y E + + E + + VE++ R + + Sbjct: 58 EDFDGRVVKVSVPVKFVRNWIQEHYAERLLHCSRVEFATAERVEVVWRQPGVAVQRPAEA 117 Query: 125 SPSIT-----------KLSPINTNISKSPIILGKQT-ISPVFGSPLDSRFVFSTFIEGSS 172 P T +P ++ + P++ ++T + GSPLD R+ F +F+ G+S Sbjct: 118 RPETTIAEKAPAAASQAEAPPRVSVLRPPVLPAQRTSAGGLEGSPLDPRYTFDSFVVGAS 177 Query: 173 NRVALTAAQSIAEV---DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 NR+A A +AE D+ GY NPL+IH++VGLGK+HLLQAIA +R P+ +V Sbjct: 178 NRMAHAGATQVAETVLTDAPGY-----NPLYIHSAVGLGKSHLLQAIAWEVKRRAPSAQV 232 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLD 289 +YLTAE F ++F A+R + L K+ RNI +LLIDD++FLQG+ + EF H++N+LLD Sbjct: 233 LYLTAERFRYQFVEALRSSDPLAFKERFRNIHMLLIDDLEFLQGERTEQEFDHIINALLD 292 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 KQVV A+ R P+++E L+ R+RSRLQ G+ L D+E+R +L+ RL + DP Sbjct: 293 GGKQVVVASARAPNQIERLNERMRSRLQRGLVTELIPLDHELRLKVLEKRLGEKRAADPS 352 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTAEIADELLSHLVNTGETK 407 ++ +V+ +A +T +GREL+GA +L +++ PI T +IA+ ++ LV E + Sbjct: 353 FTLSRDVVDLLAMRLTENGRELEGAITRLYATWQYMRTPI-TLDIAETVIRDLVQNLEPR 411 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 +++IEDI R++++HY +S+ DLLS RR R+VV PRQ+ MYL+K +T RS PEIGRRFG R Sbjct: 412 RIKIEDILRIISRHYGVSKGDLLSQRRHRSVVWPRQIGMYLAKHLTARSLPEIGRRFGGR 471 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTVLHA+RK+E + + L E+E LKRL++ Sbjct: 472 DHTTVLHAIRKIEGEITKNPHLGDELEELKRLLN 505 >gi|254503894|ref|ZP_05116045.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] gi|222439965|gb|EEE46644.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] Length = 479 Score = 358 bits (919), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 196/479 (40%), Positives = 294/479 (61%), Gaps = 29/479 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V + LKN++G D++++WF R+K + V LSVPT FLK WI + Y + + L+Q +H Sbjct: 8 VKAELKNELGEDIFSNWFGRVKHEETNGDAVRLSVPTPFLKNWILSNYEKQLVNLWQRQH 67 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSI------TKLSPINTN--------ISKSPII--L 145 I VE+ VR P + + I + +P TN ++ P + Sbjct: 68 DDISRVELTVRGALRPRPAGSQAPKPIKARRISGRAAPFATNPQFGSVNTVASIPCLADT 127 Query: 146 GKQTISPVF-GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 G+ + G+ L+ + F TF EG+SN +A A + +A H + L L+IH+S Sbjct: 128 GEDAAADFLNGAALNPKLTFDTFAEGTSNSLACAAVRQMAA--GHDGS---LGLLYIHSS 182 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G+GKTHLLQA A + R+ RV YL+AE+FM+ A+R L+ ++++IDLLL Sbjct: 183 TGIGKTHLLQAAATEA--RKGGRRVAYLSAEFFMYHLVPALRTPAYPVLRQAMKSIDLLL 240 Query: 265 IDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 IDD+QFL GK EF L L++S +++ AADR P E+ +L +R R+Q G V + Sbjct: 241 IDDLQFLHGKQGHEEFGKTLEMLMESPMKIIMAADRAPDEMSTLGSTVRQRIQTGEVVTI 300 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-- 382 DY +R ILK R+ +++ P + +EV+ ++AR V +S R+L+GA N+L F H Sbjct: 301 QATDYALRHDILKKRIFSARRTHPGFTVPDEVIDYIARYVISSARDLEGALNRL-FAHNQ 359 Query: 383 -SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + P+ T ++A++ L LV GE + +++EDIQ +V KH+++++ DLLS+ R RT+VRP Sbjct: 360 LTKQPV-TMQLAEKTLHDLVRIGEPRSIKVEDIQNVVCKHFSVTKADLLSSCRARTLVRP 418 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMY++K+MT RS PEIGRRFG+RDHTTVLHAVRK+E M+ D L +EVELLKRL+ Sbjct: 419 RQIAMYIAKVMTGRSLPEIGRRFGNRDHTTVLHAVRKIESMVAGDAALAQEVELLKRLV 477 >gi|118589254|ref|ZP_01546660.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] gi|118437954|gb|EAV44589.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] Length = 491 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 196/481 (40%), Positives = 293/481 (60%), Gaps = 32/481 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V L+N++G DV+++WF R+ + V LSVPT FLK WI+N Y + + L++ E Sbjct: 19 VKKELRNELGDDVFSNWFGRVNHEETTGDAVRLSVPTRFLKNWIQNNYEKQLVGLWKREQ 78 Query: 102 SRIQGVEILVRSVALPSVEKTASSP---SITKLSPINTNISKSPIILGKQTISPVF---- 154 I +E+ VR P T +P S ++S + +P G PV Sbjct: 79 DAINRIELTVRGALRPRQITTGLAPKAISARRISGRPGPFASTP-QFGASYGVPVIPCLA 137 Query: 155 ------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 G+ L+ + F TF EG+SN +A A + +A H T L+ L+IH Sbjct: 138 DSNEDAAADFLNGASLNPKLTFDTFAEGASNSLACAAVRQMAA--GHQGT---LDMLYIH 192 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 ++ G+GKTHLLQA A+ + R+ +V YL+AE+FM+ A+R L+ ++R+IDL Sbjct: 193 SATGIGKTHLLQAAASEA--RKTGRQVAYLSAEFFMYHLVPALRTPAFPILRQAMRSIDL 250 Query: 263 LLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LL+DD+QFL GK EF L L++S Q++ AADRP +L++L +R R+Q G V Sbjct: 251 LLVDDLQFLHGKQAAEEFSKTLELLMESPSQIIMAADRPAEDLDTLGDALRFRIQKGEVV 310 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + DY +R ILK R+ +++ P ++ E+V ++AR V S R+L+GA N+L F H Sbjct: 311 GIQATDYALRHDILKKRINAARRTHPGFSVPEDVADYIARYVIASARDLEGALNRL-FAH 369 Query: 383 ---SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + P+ T ++A++ L LV GE + +++E+IQ++V KH+++++ DLLS+ R RT+V Sbjct: 370 NQLTKQPV-TMDLAEKTLHDLVRIGEPRSIKVEEIQQVVCKHFSVTKADLLSSCRARTLV 428 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AMY++K+MT RS PEIGRRFG+RDHTTVLHAVRK+E M+ D L +EVELLKRL Sbjct: 429 RPRQIAMYIAKVMTGRSLPEIGRRFGNRDHTTVLHAVRKIEDMVTKDKALAQEVELLKRL 488 Query: 500 I 500 I Sbjct: 489 I 489 >gi|84684521|ref|ZP_01012422.1| chromosomal replication initiation protein [Maritimibacter alkaliphilus HTCC2654] gi|84667500|gb|EAQ13969.1| chromosomal replication initiation protein [Rhodobacterales bacterium HTCC2654] Length = 455 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 184/468 (39%), Positives = 292/468 (62%), Gaps = 20/468 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V RL+ VG + Y +W + L+F+ + + VPTNF+ W++ + E I + Sbjct: 1 MWGQVRERLERSVGQNNYRNWIEPLEFNDLDGGVATFLVPTNFMGNWVQRNFGEQILQHM 60 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +R+ +E +V V E ++ + +P N N + G P G+P Sbjct: 61 VNAGARVSRLEFVVPRVG----ETNRAAAADEAPAPANGNARPAAAKSGAGDDLP--GAP 114 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 115 LDKRFTFDSFVVGKPNELAHAAARRVAE-----GGPVTFNPLFLYGGVGLGKTHLMHAIA 169 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + +RQP LRV+YL+AE FM+RF A+RD ++ K R++D+L++DD+QF+ GK Sbjct: 170 HEMTERQPQLRVLYLSAEQFMYRFVQALRDKQMMDFKHMFRSVDVLMVDDVQFIAGKDST 229 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L+D KQ++ +ADR P E++ L+ RI+SRLQ G+ V L DYE+R +L Sbjct: 230 QEEFFHTFNALIDQNKQIIISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGVL 289 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 ++++A ++ P L+I + VL +A +TT+ R L+GA +L +FA ++ EI Sbjct: 290 QSKVAAYRETYPDLSIADGVLEFLAHRITTNVRVLEGALMRLF---AFASLVGGEITLDR 346 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ ++ + +K+ +E+IQR VA+HY I +DL+ +R+R++ RPRQVAM LSK + Sbjct: 347 AQECLTDVLRASD-RKVTVEEIQRKVAEHYGIRLSDLIGPKRLRSIARPRQVAMKLSKDL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS+P+IGRRFG RDH+TV+HAV++VE+++ TD + ++V+LL++ + Sbjct: 406 TTRSYPDIGRRFGGRDHSTVMHAVKRVEELVSTDHQIAEDVDLLRKAL 453 >gi|307941558|ref|ZP_07656913.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] gi|307775166|gb|EFO34372.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] Length = 487 Score = 340 bits (872), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 203/480 (42%), Positives = 295/480 (61%), Gaps = 32/480 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V ++L+ ++G DV+++WF R+ IV LSVPT FLK WI+ Y + I L+++E Sbjct: 15 VKTQLRAELGEDVFSNWFGRVMLEEEGDKIVRLSVPTRFLKNWIQLHYKDRIVSLWKKEG 74 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF------- 154 I +E+ VR P T PS +LS N N S +G+ I + Sbjct: 75 ESIDRIELTVRGAMRPRAVGTMD-PS-RQLSASNLNYRASKPNVGRHAIPALTKALRGDM 132 Query: 155 -------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 G+ ++ F TF+EG+SN +A +A + +A S L+ LFI Sbjct: 133 ASGMSDLPLQFLQGAAVNPNQTFDTFVEGNSNGLAFSAVRQMANDQSS-----TLDLLFI 187 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 H+ +G+GK+HLL A A + +V+Y+TAEYFM+ A+R +K +L ++D Sbjct: 188 HSGIGIGKSHLLHAAAAEARAA--GRKVLYVTAEYFMYHLVPALRTRSFTMVKQTLDSVD 245 Query: 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLLIDD+Q L GK Q EFC L LL+S KQV+ AADRPP +L +LD +R R GV Sbjct: 246 LLLIDDIQLLHGKQHQQEFCQTLRMLLESPKQVIVAADRPPEQLATLDDTLRKRFADGVV 305 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + DY +R +I++ R++I+++ P +I E V+ H+AR VT+S R+L+GA N+L+ Sbjct: 306 AGIQHPDYLLRKNIVEKRVSIARRHYPSFDIPEAVVDHIARNVTSSARDLEGAVNRLIAH 365 Query: 382 HSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + PI T E+AD+ L LV E + +RIEDIQ +V KHY++++NDLLS+ R T+V Sbjct: 366 NQLTNQPI-TQELADKTLHDLVKPTEVRSVRIEDIQHVVCKHYSVTKNDLLSSCRAHTIV 424 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 +PRQ+AMYL+K+MT RS PEIGRRFG+RDHTTVLHAVRK++KM+++D L E++LLKRL Sbjct: 425 KPRQIAMYLAKVMTGRSLPEIGRRFGNRDHTTVLHAVRKIDKMVKSDAGLAAEIDLLKRL 484 >gi|119385558|ref|YP_916613.1| chromosomal replication initiation protein [Paracoccus denitrificans PD1222] gi|119376153|gb|ABL70917.1| chromosomal replication initiator protein DnaA [Paracoccus denitrificans PD1222] Length = 448 Score = 338 bits (868), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 181/460 (39%), Positives = 278/460 (60%), Gaps = 30/460 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ VG D +++W + L+ V ++ PT FL W+ Y + I K+ +Q Sbjct: 12 LQKIVGTDSFSTWIEPLRLTGVADGTATIACPTRFLSDWVSRHYSDDILKVLDRMGGPVQ 71 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 + RS + A++P + + +P P + G++ ++ +PLDSRF F Sbjct: 72 RLSFETRS----QTARQAAAPVVKRPAP--------PRVSGEEELA----APLDSRFTFE 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA RQP Sbjct: 116 NFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAREIQIRQP 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 RV+YL+AE FM+RF A+RD ++ K+ R + +L++DD+QF+ GK Q EF H Sbjct: 171 EARVLYLSAEQFMYRFVQALRDRTVMDFKELFRTVSVLMVDDVQFIAGKDSTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L+D KQ+V +ADR P E++ ++ RI+SRLQ G+ V L DYE+R IL+++ + Sbjct: 231 NTLVDQGKQIVISADRAPGEIKDMEERIKSRLQCGLVVDLHPTDYELRLGILQSKTDSFR 290 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA----DELLSHL 400 + P L I VL +A +T++ R L+GA +L +FA ++ EI E L+ + Sbjct: 291 AQYPGLLIAPGVLEFLAHRITSNVRVLEGALQRLF---AFASLMGREITLDMTQECLADI 347 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + + +K+ IE+IQR VA+HYNI D++ +RVRTV RPRQ+AMYL+K MT RS PEI Sbjct: 348 LRAND-RKVSIEEIQRKVAEHYNIRLADMIGPKRVRTVARPRQIAMYLAKQMTSRSLPEI 406 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 GRRFG RDHTT++H V+K+E++ +D +L ++++LL+RL+ Sbjct: 407 GRRFGGRDHTTIMHGVKKIEELRGSDRSLSEDIDLLRRLL 446 >gi|126724505|ref|ZP_01740348.1| chromosomal replication initiation protein [Rhodobacterales bacterium HTCC2150] gi|126705669|gb|EBA04759.1| chromosomal replication initiation protein [Rhodobacterales bacterium HTCC2150] Length = 460 Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 188/474 (39%), Positives = 283/474 (59%), Gaps = 31/474 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V LK VG + Y +W + L+F I VPT F+ W+ + + I +L Sbjct: 5 VWGRVCESLKGSVGNNNYVTWIKPLQFAGFDAGIATFHVPTTFMGNWVSRNFGDQIQQLL 64 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP----- 152 E G+ +P+ ++ SS + T +P ++ + + P Sbjct: 65 MAE-----GLSATRVMFKVPTQKQAMSSIPTKSM----TAKPAAPAVVKR--VQPSVEKE 113 Query: 153 -VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V G+PLD+RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTH Sbjct: 114 NVMGAPLDARFQFDSFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGVGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ +IA R PNL+VVYL+AE FM+RF ++RD ++ K R++D+L++DD+QF+ Sbjct: 169 LMHSIAWQLQTRTPNLKVVYLSAEQFMYRFVQSLRDRSTMDFKQIFRSVDVLMVDDVQFI 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L+D +Q++ + DR PSE+ LD RI+SRLQ G+ V L DYE Sbjct: 229 AGKDSTQDEFFHTFNALVDQGRQIIISGDRSPSEMNGLDDRIQSRLQSGLVVDLHPTDYE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 +R IL+ ++ + + + L I VL +A ++T+ R L+GA +L +FA ++ Sbjct: 289 LRLGILQQKVELYKSQYSDLVIAPGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGR 345 Query: 391 EIADEL----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 EI +L L+ ++ + + +K+ I++I R VA+HYNI +D+LS RR RTV RPRQVAM Sbjct: 346 EITMDLTQDCLADILRSSD-RKVTIDEIMRKVAEHYNIRMSDMLSPRRTRTVARPRQVAM 404 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLSK +T RS+PEIGRRFG RDHTTVLHAVRK+E++ D + +VELL+R++ Sbjct: 405 YLSKHLTQRSYPEIGRRFGGRDHTTVLHAVRKIEELKSIDSQISDDVELLRRML 458 >gi|83309735|ref|YP_419999.1| chromosomal replication initiation protein [Magnetospirillum magneticum AMB-1] gi|82944576|dbj|BAE49440.1| ATPase [Magnetospirillum magneticum AMB-1] Length = 477 Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 183/475 (38%), Positives = 282/475 (59%), Gaps = 21/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +S + V RLK++VG Y SW + + H + + V L++PT F++ W+ Y E I Sbjct: 13 AKSEWDRVKVRLKDEVGDAAYRSWLRPITLHDMSEDAVKLALPTRFMRDWVNTHYAERIR 72 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV- 153 L+ E+ I+ VEI+V + SV + A+ S+ K+ P + Sbjct: 73 TLWGAENPAIRNVEIVVEAARAVSVAQNAAKASVAKVVPSPAAAPVRAAAAPCAPAAAPN 132 Query: 154 -----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 G+PLD+RF F F+ G N A AA+ +AE D V NPLF++ VGLG Sbjct: 133 ADNDELGAPLDNRFTFKNFVVGKPNEFAWAAARRVAEADQ-----VSFNPLFLYGGVGLG 187 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AIA+ +R P V+YL+AE FM+RF A+R ++ K+ R++D+L+IDD+ Sbjct: 188 KTHLMHAIAHHIRERNPERSVLYLSAEKFMYRFIRALRGQDTMSFKEQFRSVDVLMIDDV 247 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H N+L+D +Q+V +AD+ PS+LE ++ R+RSR+ G+ + Sbjct: 248 QFIAGKDATQEEFFHTFNALVDQGRQIVISADKSPSDLEGIEERLRSRMACGLVADIHAT 307 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS--FA 385 YE+R IL S+ E + + ++V+ +A + ++ REL+GA N++V HS Sbjct: 308 TYELRLGILH-----SKAEQMGVLVPQKVMEFLAHKIISNVRELEGALNRVVA-HSQLVG 361 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E E+L L+ + +++ IE+IQ+ VA+H+ I ++ S RR R V RPRQ+A Sbjct: 362 RAITLETTQEVLHDLLRASD-RRITIEEIQKKVAEHFTIKLAEMSSARRSRQVARPRQIA 420 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL+K +T RS PEIGR+FG RDHTTV+HAV+KVE++ E D ++VELL+R++ Sbjct: 421 MYLAKQLTSRSLPEIGRKFGGRDHTTVMHAVKKVEELKECDQNFAEDVELLRRML 475 >gi|255264264|ref|ZP_05343606.1| chromosomal replication initiator protein DnaA [Thalassiobium sp. R2A62] gi|255106599|gb|EET49273.1| chromosomal replication initiator protein DnaA [Thalassiobium sp. R2A62] Length = 447 Score = 336 bits (861), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 177/461 (38%), Positives = 280/461 (60%), Gaps = 34/461 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L++Q+G + +++W + L F V + VPTNF+ ++ Y E I L + + Sbjct: 13 LRDQLGANTFSNWIEPLSFSDVTDGVATFHVPTNFMGNYVAQNYSEQIVYLMNRSGADVS 72 Query: 106 GVEILV-RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 + V + A P+ S P+ T P NT + V G+PLD+RF F Sbjct: 73 RAKFAVAQKSACPT-----SKPTTTGQPPANT--------------AAVPGAPLDARFTF 113 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ R+ Sbjct: 114 DRFVVGKPNELAFAAAKRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAHELTARR 168 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 +L V+YL+AE FM+RF +A+R+N ++ K R++D+L++DD+QF+ GK Q EF H Sbjct: 169 SDLNVLYLSAEQFMYRFVTALRENSMMDFKHMFRSVDILMVDDVQFIAGKGSTQEEFFHT 228 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L+D KQ++ +ADR P E++ L+ RI+SRLQ G+ V L DYE+R IL++++ Sbjct: 229 FNALVDQNKQIIISADRAPGEIKDLEERIKSRLQSGLVVDLHPTDYELRLGILQSKVRAY 288 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSH 399 +++ L I + VL +A ++T+ R L+GA +L ++FA + +T E+A + LS Sbjct: 289 REQYAGLVIADGVLEFLAHRISTNVRVLEGALTRL---YAFASLVGKEITLELAQDCLSD 345 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 ++ + +K+ +E+IQR V++HYNI +D++ +RVR RPRQ+AM+L K MT RS PE Sbjct: 346 ILRASD-RKITVEEIQRKVSEHYNIRLSDMIGPKRVRAYARPRQIAMWLCKQMTSRSLPE 404 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IGRRFG RDHTTV+H V++VE++ D + ++E+L+R + Sbjct: 405 IGRRFGGRDHTTVMHGVKRVEELKTIDSQISDDLEMLRRAL 445 >gi|146276060|ref|YP_001166219.1| chromosomal replication initiation protein [Rhodobacter sphaeroides ATCC 17025] gi|145554301|gb|ABP68914.1| chromosomal replication initiator protein DnaA [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 330 bits (846), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 183/469 (39%), Positives = 282/469 (60%), Gaps = 31/469 (6%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +R E+ E+ + LK +VG + + +W + L+ + + VPT F W++ Sbjct: 4 ERAQEMTNETWVQVREGLLK-RVGRNNFVTWIEPLRLMGLDDGVARFEVPTLFFGDWVQR 62 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVE--KTASSPSITKLSPINTNISKSPIIL 145 + + I E S ++ +E V + P ++ +TA++P + K P Sbjct: 63 NFADHIRLRLTEAGSPVERLEFAVSNSPRPPLKEVRTAAAP-VAKARPAPAE-------- 113 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + G+PLDSRF F +F+ G N +A AA+ +AE V NPLF++ V Sbjct: 114 -----EDLRGAPLDSRFTFDSFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGV 163 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ AIA+ KRQP RV+YL+AE FM+RF A+R+ L K+ R++D+L++ Sbjct: 164 GLGKTHLMHAIAHELQKRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMV 223 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L Sbjct: 224 DDVQFIAGKDSTQEEFFHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDL 283 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 DYE+R IL+ + +++ L I + VL +A +TT+ R L+GA +L +F Sbjct: 284 HPTDYELRLGILQQKADFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLF---AF 340 Query: 385 API----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 A + +T ++A + L+ ++ + +K+ IE+IQR VA+HYNI +D++ +R+RT+ R Sbjct: 341 ASLVGREITLDLAQDCLADILRASD-RKVTIEEIQRKVAEHYNIRLSDMIGPKRLRTIAR 399 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 PRQVAMYL+K +TPRS PEIGRRFG RDHTT++H VRK+E+++ TD L Sbjct: 400 PRQVAMYLAKHLTPRSLPEIGRRFGGRDHTTIMHGVRKIEELMATDSQL 448 >gi|260574423|ref|ZP_05842427.1| chromosomal replication initiator protein DnaA [Rhodobacter sp. SW2] gi|259023319|gb|EEW26611.1| chromosomal replication initiator protein DnaA [Rhodobacter sp. SW2] Length = 452 Score = 329 bits (843), Expect = 7e-88, Method: Compositional matrix adjust. Identities = 181/455 (39%), Positives = 271/455 (59%), Gaps = 31/455 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V L+ Q+G + Y SW + L + + +V VP+ F W+ Y + I Sbjct: 9 VCEELRQQIGDNNYKSWIEPLTLSGLENGVVSFRVPSQFHGDWVSRNYSDHIRAHLGTAG 68 Query: 102 SRIQGVEIL--VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 + VE R+VA P KTA+ + ++ P G+PLD Sbjct: 69 VTVHRVEFKHSARAVAAP---KTAAPRGVKAAKARPAAEAEVP------------GAPLD 113 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 SRF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 114 SRFTFDSFVVGKPNELAHAAARRVAEGGP-----VSFNPLFLYGGVGLGKTHLMHAIAHE 168 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 RQP+LRV+YL+AE FM+RF A+R+ ++ K+ R++D+L++DD+QF+ GK Q Sbjct: 169 LHVRQPHLRVLYLSAEQFMYRFVQALRERQIMDFKELFRSVDVLMVDDVQFIAGKDSTQE 228 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L DYE+R IL+ Sbjct: 229 EFFHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQ 288 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL-- 396 + + + P L + + V+ +A +TT+ R L+GA +L +FA ++ EI +L Sbjct: 289 KAEFYRGQYPGLQLADGVVEFLAHRITTNVRVLEGALTRLF---AFASLVGREITLDLTQ 345 Query: 397 --LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L+ ++ + +K+ IE+IQR VA+H+NI D++ +RVRT+ RPRQVAMYL+K +TP Sbjct: 346 DCLADILRASD-RKVTIEEIQRKVAEHFNIRLADMIGPKRVRTIARPRQVAMYLAKQLTP 404 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 RS PEIGRRFG RDHTT++H VR++E+++ TD L Sbjct: 405 RSLPEIGRRFGGRDHTTIMHGVRRIEELITTDSQL 439 >gi|154250459|ref|YP_001411283.1| chromosomal replication initiator protein DnaA [Parvibaculum lavamentivorans DS-1] gi|154154409|gb|ABS61626.1| chromosomal replication initiator protein DnaA [Parvibaculum lavamentivorans DS-1] Length = 519 Score = 328 bits (842), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 191/497 (38%), Positives = 304/497 (61%), Gaps = 26/497 (5%) Query: 17 IAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV 76 ++E+ P + +R ++ + V +RL+ ++G + SWF++++ + V V LSV Sbjct: 29 LSEEAPGAAL-RRAPAMSLAEQWRRVRARLQAELGEATFNSWFKQVEMNGVSEGRVMLSV 87 Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PT F++ WI + Y + + KL+ +E V++LV + A +T + ++ +P+ T Sbjct: 88 PTRFIRNWIVSHYADRLAKLWADEDPSFCRVDVLVGAEA-----RTEDAAPVSDAAPVET 142 Query: 137 NISKSPIILGKQTI----------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 +++P + T G+PLD RF F F+ G SN +A AA+ +AE Sbjct: 143 AAAQAPSAIRADTPLATAVPHGFEDAGVGAPLDPRFTFDAFVVGKSNELAHAAARRVAEA 202 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 T V NPLF++ VGLGKTHL+ AIA KRQP +V+YL+AE FM++F A+R Sbjct: 203 -----TDVTFNPLFLYGGVGLGKTHLMHAIAWEIRKRQPERKVLYLSAEKFMYQFVRALR 257 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K R++D+L+IDD+QF+ GK Q EF H N+L+D +QV+ +ADR PS+L Sbjct: 258 FKDTMAFKQQFRSVDVLMIDDVQFISGKDSTQEEFFHTFNALIDHNRQVIISADRSPSDL 317 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 E ++ RIRSRL G++ + DYE+R IL+ + + + ++I VL +A + Sbjct: 318 EGIEERIRSRLGWGLAADIHPTDYELRLGILQAKADEMMQRNGPVSIPPGVLEFLAHRIV 377 Query: 366 TSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 ++ REL+GA ++V S PI T +++ E+L L+ + + +K+ IE+IQR VA++YN Sbjct: 378 SNVRELEGALKRVVAYASLVGRPI-TLDMSQEVLRDLLRSND-RKITIEEIQRRVAEYYN 435 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + D+LS RR R V RPRQVAMYLSK +T RS PEIGR+FG RDHTTV+HAVRK++++ Sbjct: 436 VRLADMLSARRARAVARPRQVAMYLSKQLTTRSLPEIGRKFGGRDHTTVIHAVRKIDELC 495 Query: 484 ETDITLKKEVELLKRLI 500 D ++++V+LL+R++ Sbjct: 496 LVDSGIEEDVDLLRRML 512 >gi|254463282|ref|ZP_05076698.1| chromosomal replication initiator protein DnaA [Rhodobacterales bacterium HTCC2083] gi|206679871|gb|EDZ44358.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae bacterium HTCC2083] Length = 458 Score = 328 bits (842), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 182/464 (39%), Positives = 279/464 (60%), Gaps = 25/464 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ VG + Y +W L F + SVPTNFL ++ + + I Q+ IQ Sbjct: 13 LRASVGKNNYTNWIGPLSFIGAKSGVASFSVPTNFLGNYVSQNFGDMIVYQAQQAGHDIQ 72 Query: 106 GVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 V +L + A S + A +P +P + S P L G+PLD RF Sbjct: 73 RVHFAVLKANHADTSKQHAAVAPKPDTHAPAQKS-SNFPDALA--------GAPLDKRFT 123 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TF+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 124 FDTFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAHELQSS 178 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +P+L+V+YL+AE FM+RF A+R+ ++ K R +D+L++DD+QF+ GK Q EF H Sbjct: 179 RPDLKVLYLSAEQFMYRFVQALRERKMMDFKSLFRAVDVLMVDDVQFIGGKDSTQEEFFH 238 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N+L+D KQ++ +ADR P E++ L+ RI+SRLQ G+ V L DYE+R IL++++ I Sbjct: 239 TFNALVDQNKQIIISADRAPGEIKGLEDRIKSRLQCGLVVDLHPTDYELRLGILQSKVEI 298 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL----LS 398 + + P L+I+E ++ +A ++T+ R L+GA +L +FA ++ EI +L LS Sbjct: 299 QKAQYPGLHIDEGIIEFLAHRISTNVRVLEGALTRLF---AFASLVGREITMDLTVDCLS 355 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ E +K+ +E+IQR V++HYNI ++L+ +RVR RPRQVAMYL K +T RS P Sbjct: 356 DVLRASE-RKITVEEIQRRVSEHYNIRLSELIGPKRVRNFARPRQVAMYLCKQLTSRSLP 414 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 EIGRRFG RDHTTV+H V+++E++ D + +++E+L+R + E Sbjct: 415 EIGRRFGGRDHTTVMHGVKRIEELKVQDGQIAEDIEMLRRALEE 458 >gi|126730156|ref|ZP_01745968.1| chromosomal replication initiation protein [Sagittula stellata E-37] gi|126709536|gb|EBA08590.1| chromosomal replication initiation protein [Sagittula stellata E-37] Length = 459 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 177/456 (38%), Positives = 277/456 (60%), Gaps = 20/456 (4%) Query: 50 VGPDVYASWFQRLKFHSVLHN-IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE 108 +G + Y +W Q L+F + + IV L PTNF ++ + + + ++I VE Sbjct: 17 IGQNNYKTWIQPLRFRGITADGIVTLQAPTNFFGTYVSQNFGDMLL-------AQISTVE 69 Query: 109 ILVRSVALPS-VEKTASSPSITKLSPINT-NISKSPIILGKQTISPVFGSPLDSRFVFST 166 R +A + + +S + K P+N ++P+ + P G+PLD RF F T Sbjct: 70 PSARRLAFQAGILDDSSEDAEEKAKPLNIPEAEQAPVTSSRDQQLP--GAPLDMRFTFDT 127 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA +R P Sbjct: 128 FVVGKPNELAHAAARRVAE-----GGPVTFNPLFLYGGVGLGKTHLMHAIAWELSQRNPG 182 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 L V+YL+AE FM+RF A+R+ ++ K+ R++D+L++DD+QF+ GK Q EF H N Sbjct: 183 LTVLYLSAEQFMYRFVQALRERKMMDFKEMFRSVDVLMVDDVQFIAGKDSTQEEFFHTFN 242 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L+D KQ++ +ADR P E++ L+ RIRSRLQ G+ V L DYE+R IL++++ + + Sbjct: 243 ALVDQNKQIIISADRAPDEIKDLENRIRSRLQSGLVVDLHPTDYELRLGILQSKVEVYRG 302 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTG 404 P L I++ VL +A ++T+ R L+GA +L F + ++ + L+ ++ Sbjct: 303 MHPGLQIDDGVLEFLAHRISTNVRVLEGALTRLFAFASLVGKPINMDLVQDSLADVLRAS 362 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 E +K+ I++IQR VA+HYNI +D++ +RVR RPRQVAMYL K +T RS PEIGRRF Sbjct: 363 E-RKISIDEIQRKVAEHYNIRLSDMIGPKRVRNFARPRQVAMYLCKQLTSRSLPEIGRRF 421 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 G RDHTTV+H VR++E++ + D + ++VE+L+R + Sbjct: 422 GGRDHTTVMHGVRRIEELRQQDGQIDEDVEMLRRAL 457 >gi|110677616|ref|YP_680623.1| chromosomal replication initiation protein [Roseobacter denitrificans OCh 114] gi|123362395|sp|Q16DK6|DNAA_ROSDO RecName: Full=Chromosomal replication initiator protein DnaA gi|109453732|gb|ABG29937.1| chromosomal replication initiator protein DnaA [Roseobacter denitrificans OCh 114] Length = 454 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 179/466 (38%), Positives = 281/466 (60%), Gaps = 25/466 (5%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + RL VG + Y +W + ++F S + VPTNFL ++ + + I ++E Sbjct: 9 LQQRLLKTVGQNNYKNWIEPIEFGSTQDGVATFEVPTNFLGNYVSQNFADLILHEVRQED 68 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 ++ + A+PS + P+ P ++P K S + +PLD+R Sbjct: 69 PAVRRLRF-----AVPSHVNATTKPA----RPAQATAPRAPA--EKTPRSTLSTAPLDAR 117 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F FI G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 118 FTFDNFIVGKPNELAHAAAKRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAHELR 172 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 R+P + V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Q EF Sbjct: 173 LRRPEMNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKGSTQEEF 232 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L+D KQ++ + DR P E++ ++ R++SRLQ G+ V L DYE+R IL++++ Sbjct: 233 FHTFNALVDQNKQIIISGDRAPGEIKDMEERVKSRLQCGLVVDLHPTDYELRLGILQSKV 292 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL---- 396 +K P L+I++ VL +A ++T+ R L+GA +L +FA ++ EI EL Sbjct: 293 EQQRKNYPGLDISDGVLEFLAHRISTNVRVLEGALTRLC---AFASLVGREIDMELTQDC 349 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LS ++ E +K+ +E+IQR V+ HYNI +D++ +R+R+ RPRQVAMYLSK MT RS Sbjct: 350 LSDVLRASE-RKITVEEIQRKVSDHYNIRLSDMIGPKRLRSYARPRQVAMYLSKKMTSRS 408 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIGRRFG RDHTTV+H V+++E++ D + +++ELL+R + E Sbjct: 409 LPEIGRRFGGRDHTTVMHGVKRIEELKIQDGQIAEDLELLRRALEE 454 >gi|163733262|ref|ZP_02140706.1| chromosomal replication initiation protein [Roseobacter litoralis Och 149] gi|161393797|gb|EDQ18122.1| chromosomal replication initiation protein [Roseobacter litoralis Och 149] Length = 454 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 180/464 (38%), Positives = 283/464 (60%), Gaps = 27/464 (5%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 RL VG + Y +W + ++F + + VPTNFL ++ + + I ++E+ + Sbjct: 12 RLLKTVGQNNYKNWIEPIEFGNTQDGVATFDVPTNFLGNYVSQNFADLILHEVRQENPTV 71 Query: 105 QGVEILVRSVALPS-VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + + A+PS V TA+ P + + K+P S + +PLD+RF Sbjct: 72 RRLRF-----AVPSHVNSTATPPRTGQSNAPRGAAPKTPR-------SGLSTAPLDARFT 119 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F FI G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ R Sbjct: 120 FDNFIVGKPNELAHAAAKRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAHDLRLR 174 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +P + V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Q EF H Sbjct: 175 RPEINVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKGSTQEEFFH 234 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N+L+D KQ++ + DR P E++ ++ R++SRLQ G+ V L DYE+R IL++++ Sbjct: 235 TFNALVDQNKQIIISGDRAPGEIKDMEERVKSRLQCGLVVDLHPTDYELRLGILQSKVEQ 294 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL----LS 398 +K P L+I++ VL +A ++T+ R L+GA +L +FA ++ EI EL LS Sbjct: 295 QRKNYPGLDISDGVLEFLAHRISTNVRVLEGALTRLC---AFASLVGREIDMELTQDCLS 351 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ E +K+ +E+IQR V+ HYNI +D++ +R+R+ RPRQVAMYLSK MT RS P Sbjct: 352 DVLRASE-RKITVEEIQRKVSDHYNIRLSDMIGPKRLRSYARPRQVAMYLSKKMTSRSLP 410 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 EIGRRFG RDHTTV+H V+++E++ D + +++ELL+R + E Sbjct: 411 EIGRRFGGRDHTTVMHGVKRIEELKIQDGQIAEDLELLRRALEE 454 >gi|126734082|ref|ZP_01749829.1| chromosomal replication initiation protein [Roseobacter sp. CCS2] gi|126716948|gb|EBA13812.1| chromosomal replication initiation protein [Roseobacter sp. CCS2] Length = 445 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 180/470 (38%), Positives = 281/470 (59%), Gaps = 34/470 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V + LK +G + Y+SW + L+F + + VPTNF+ ++ + + I Sbjct: 5 IWAKVLNTLKGALGANSYSSWIEPLEFTQLSDGVAIFDVPTNFIGNYVSQNFGDQIIYHM 64 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + +Q ++ V PS + A+ K + N S G+P Sbjct: 65 NKAGEDVQRLQFRV-----PSQTRPATKAKSVKKTIEAENGS---------------GAP 104 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD+RF F TF+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 105 LDNRFTFDTFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIA 159 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + +R P L V+YL+AE FM+RF +A+R+ ++ K R++D+L++DD+QF+ GK Sbjct: 160 HELKERSPELNVLYLSAEQFMYRFITALRERKMMDFKQLFRSVDVLMVDDVQFIGGKDST 219 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L+D KQ++ +ADR P E++ L+ RI+SRLQ G+ V L DYE+R IL Sbjct: 220 QEEFFHTFNALVDGQKQIIISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGIL 279 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 ++++ + + P+L I + VL +A ++T+ R L+GA +L +FA ++ EI EL Sbjct: 280 QSKVDVYSAQYPELVIADGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGREITLEL 336 Query: 397 ----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 LS ++ + +K+ +E+IQR V++HYNI +D++ +RVR RPRQ+AMYL+K M Sbjct: 337 TQDCLSDVLKASD-RKVTVEEIQRKVSEHYNIRLSDMIGPKRVRNYARPRQIAMYLAKQM 395 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T RS PEIGRRFG RDHTTV+H V+++E++ D + ++ELL+R + E Sbjct: 396 TSRSLPEIGRRFGGRDHTTVMHGVKRIEELKALDSQIADDLELLRRALQE 445 >gi|329113489|ref|ZP_08242270.1| Chromosomal replication initiator protein DnaA [Acetobacter pomorum DM001] gi|326697314|gb|EGE48974.1| Chromosomal replication initiator protein DnaA [Acetobacter pomorum DM001] Length = 477 Score = 326 bits (835), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 178/461 (38%), Positives = 279/461 (60%), Gaps = 15/461 (3%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + +RLK +VG Y +W ++ + + + L +PT FL+ W++++Y + +++L+ +E Sbjct: 28 ICARLKGEVGEVEYRTWLTKIALGPIDGDEITLLLPTRFLRDWVRSQYGDRLSELWNQEI 87 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 I+ VE+ V P+ S PS +P +P + + LDSR Sbjct: 88 PSIRRVELQVARAGDPAPIPLESVPSANAATPAQEE--ATPAARTAPEVRSDLVTALDSR 145 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F TF+ G N A A+ +AE S +V NPLF++ VGLGKTHL+ AI A + Sbjct: 146 FTFDTFVVGKPNEFAYACARRVAEKPS----SVGFNPLFLYGGVGLGKTHLMHAIG-AEL 200 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEF 280 + N+ V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL GK Q EF Sbjct: 201 IQSGNVSVAYMSAEKFMYRFIAAIRSQSTIEFKEQLRSVDVLMIDDLQFLIGKDNTQEEF 260 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ + +E+R SIL+++ Sbjct: 261 FHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRISILESKA 320 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLSH 399 A S P +VL +A +T++ REL+GA N+L+ + F +T E E+L H Sbjct: 321 AASGVVVPG-----KVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEATQEVL-H 374 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 + +++ IE+IQ+ VA+H+NI D+ S RR R V RPRQVAMYL+K +T RS PE Sbjct: 375 DILKAHDRRVTIEEIQKKVAEHWNIRLTDMSSARRARNVARPRQVAMYLAKQLTSRSLPE 434 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IGR+FG+RDHTTV+HAV +V +++ D ++VELL+R++ Sbjct: 435 IGRKFGNRDHTTVMHAVNRVTELMGLDAAFAEDVELLRRML 475 >gi|294675558|ref|YP_003576173.1| chromosomal replication initiator protein DnaA [Rhodobacter capsulatus SB 1003] gi|294474378|gb|ADE83766.1| chromosomal replication initiator protein DnaA [Rhodobacter capsulatus SB 1003] Length = 457 Score = 325 bits (834), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 178/465 (38%), Positives = 275/465 (59%), Gaps = 24/465 (5%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V + L+ VG + +W L+ + IV PT F+ W+ Y E I + + Sbjct: 9 VCNELQRTVGRTNFNTWIAPLQLIELSDGIVSFEAPTKFMCDWVSRNYGEPILRELRNSG 68 Query: 102 SRIQGVEILV-RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 ++ V I V +P+ E + +S+ + G+PLD+ Sbjct: 69 MAVERVAIRVPEGRPMPAPEARPMPEKAPAPARKAARVSED---------QDLPGAPLDA 119 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 120 RFTFDSFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAHEL 174 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 + LRV+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Q E Sbjct: 175 QTQHGELRVLYLSAEQFMYRFVQALRDRQIMDFKELFRSVDVLMVDDVQFIAGKDSTQEE 234 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L DYE+R IL+ + Sbjct: 235 FFHTFNALVDQGKQIVISADRAPGEIKDLEDRIKSRLQCGLVVDLHPTDYELRLGILQTK 294 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADE 395 I +P L + VL +A +TT+ R L+GA +L +FA + +T ++A E Sbjct: 295 TEIHAARNPGLVVASGVLEFLAHRITTNVRVLEGALTRLF---AFASLVGREITLDLAQE 351 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L+ ++ + +++ IE+IQR VA+HYN+ +D++ +R+RT+ RPRQVAMYLSK +T R Sbjct: 352 CLADILRASD-RRVTIEEIQRKVAEHYNVRLSDMIGPKRLRTIARPRQVAMYLSKHLTTR 410 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S PEIGRRFG RDHTT++H +RK+++++ TD L +++ LLKRL+ Sbjct: 411 SLPEIGRRFGGRDHTTIMHGIRKIDELMTTDRQLAEDIGLLKRLM 455 >gi|258542326|ref|YP_003187759.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-01] gi|256633404|dbj|BAH99379.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-01] gi|256636463|dbj|BAI02432.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-03] gi|256639516|dbj|BAI05478.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-07] gi|256642572|dbj|BAI08527.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-22] gi|256645627|dbj|BAI11575.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-26] gi|256648680|dbj|BAI14621.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-32] gi|256651733|dbj|BAI17667.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654724|dbj|BAI20651.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-12] Length = 477 Score = 325 bits (833), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 177/461 (38%), Positives = 279/461 (60%), Gaps = 15/461 (3%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + +RLK +VG Y +W ++ + + + L +PT FL+ W++++Y + +++L+ +E Sbjct: 28 ICARLKGEVGEVEYRTWLTKIALGPIDGDEITLLLPTRFLRDWVRSQYGDRLSELWNQEI 87 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 I+ VE+ V P+ + PS +P +P + + LDSR Sbjct: 88 PSIRRVELQVARAGDPAPIPLENVPSTAAATPAQEE--ATPAARTAPEVRSDLVTALDSR 145 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F TF+ G N A A+ +AE S +V NPLF++ VGLGKTHL+ AI A + Sbjct: 146 FTFDTFVVGKPNEFAYACARRVAEKPS----SVGFNPLFLYGGVGLGKTHLMHAIG-AEL 200 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEF 280 + N+ V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL GK Q EF Sbjct: 201 IQSGNVSVAYMSAEKFMYRFIAAIRSQSTIEFKEQLRSVDVLMIDDLQFLIGKDNTQEEF 260 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ + +E+R SIL+++ Sbjct: 261 FHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRISILESKA 320 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLSH 399 A S P +VL +A +T++ REL+GA N+L+ + F +T E E+L H Sbjct: 321 AASGVVVPG-----KVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEATQEVL-H 374 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 + +++ IE+IQ+ VA+H+NI D+ S RR R V RPRQVAMYL+K +T RS PE Sbjct: 375 DILKAHDRRVTIEEIQKKVAEHWNIRLTDMSSARRARNVARPRQVAMYLAKQLTSRSLPE 434 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IGR+FG+RDHTTV+HAV +V +++ D ++VELL+R++ Sbjct: 435 IGRKFGNRDHTTVMHAVNRVTELMGLDAAFAEDVELLRRML 475 >gi|51473779|ref|YP_067536.1| chromosomal replication initiation protein [Rickettsia typhi str. Wilmington] gi|61212556|sp|Q68WD8|DNAA_RICTY RecName: Full=Chromosomal replication initiator protein DnaA gi|51460091|gb|AAU04054.1| chromosomal replication initiator protein DnaA [Rickettsia typhi str. Wilmington] Length = 463 Score = 323 bits (829), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 179/469 (38%), Positives = 292/469 (62%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSYVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYAMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + V P +T S NIS S + + TIS Sbjct: 74 LQLFQHYNNAIKSIEIITKEV--PGTTQTVIELPTKTFS----NISNSALN-SENTIST- 125 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 LD RF F F+ G+ N +A AA+++AE + + NPLF++ VGLGKTHL+ Sbjct: 126 ----LDLRFTFDNFVVGAPNELAYAAARAVAESSGAVFES---NPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ + K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKDVINFLASKIVSNVRELEGALNKVIAHSNFTLKAITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSKI Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVANRYNIKLSDMYSSRRLREVARPRQIAMYLSKI 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKIL 461 >gi|296115229|ref|ZP_06833870.1| chromosomal replication initiator protein DnaA [Gluconacetobacter hansenii ATCC 23769] gi|295978330|gb|EFG85067.1| chromosomal replication initiator protein DnaA [Gluconacetobacter hansenii ATCC 23769] Length = 484 Score = 320 bits (821), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 178/469 (37%), Positives = 285/469 (60%), Gaps = 18/469 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + +RLK +VG Y +W +++ V + + L +PT FL+ W++ +Y + + L+ Sbjct: 25 WSRICARLKAEVGEVEYNTWLRQMGVGPVDEDEITLYLPTRFLRDWVRGQYGDRLGALWH 84 Query: 99 EEHSRIQGVEILVRSVALPSVEKTAS---SPSITKLSPINTNISKSPIILGKQT--ISPV 153 E I+ VE+ V P+V+ AS S + + +P + + ++ +T + Sbjct: 85 AEIPAIRRVELQVARGPSPAVDGDASAAESGAPSAATPPAMPVMDAVVVEEPRTAEVRSD 144 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 +PLD RF F TF+ G N A A+ +AE S + NPLF++ VGLGKTHL+ Sbjct: 145 LAAPLDPRFTFDTFVVGKPNEFAYACARRVAERPS----SPGFNPLFLYGGVGLGKTHLM 200 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + R+ + V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL G Sbjct: 201 HAIGS-ELVREGRVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFLIG 259 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ + +E+R Sbjct: 260 KDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELR 319 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAE 391 SIL+ + S E P +VL +A +T++ REL+GA N+L+ + F +T E Sbjct: 320 ISILEAKATASGVEVPA-----KVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLE 374 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 ++L H + +++ IE+IQR VA+H+NI D+ S RR V RPRQVAM+LSK Sbjct: 375 TTQDVL-HDILKANNRRVTIEEIQRKVAEHWNIRLTDMSSARRSTVVARPRQVAMFLSKQ 433 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T RS PEIGR+FG+RDHTTV++AVR+V +++E D ++VELL+R++ Sbjct: 434 LTSRSLPEIGRKFGNRDHTTVIYAVRRVMELMEQDPAFAEDVELLRRML 482 >gi|238650715|ref|YP_002916568.1| chromosomal replication initiation protein [Rickettsia peacockii str. Rustic] gi|259645260|sp|C4K1R9|DNAA_RICPU RecName: Full=Chromosomal replication initiator protein DnaA gi|238624813|gb|ACR47519.1| chromosomal replication initiation protein [Rickettsia peacockii str. Rustic] Length = 463 Score = 320 bits (821), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 176/469 (37%), Positives = 292/469 (62%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVTELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD+RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDARFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKIL 461 >gi|260429115|ref|ZP_05783092.1| chromosomal replication initiator protein DnaA [Citreicella sp. SE45] gi|260419738|gb|EEX12991.1| chromosomal replication initiator protein DnaA [Citreicella sp. SE45] Length = 556 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 175/465 (37%), Positives = 279/465 (60%), Gaps = 17/465 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSV-LHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + +L + +G + Y +W Q ++FH + I +VPTNF+ ++ + E + Sbjct: 104 WGALQDQLSSTIGENNYKTWIQPIEFHGIEPGGIAVFNVPTNFIGTYVSQNFGELLLAKL 163 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 S I+ ++ V +V ++ +P+ + T + S +L G+P Sbjct: 164 ASMDSEIRRLKFQVANVDTRPSQQPRPAPTAGSAASTQTATATSGDVLP--------GAP 215 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD+RF F +FI G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 216 LDARFTFDSFIVGKPNELAHAAAKRVAEGGQ-----VTFNPLFLYGGVGLGKTHLMHAIA 270 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 +P+L V+YL+AE FM+RF A+R+ ++ K+ R++D+L++DD+QF+ GK Sbjct: 271 WDLRNHRPDLNVLYLSAEQFMYRFVQALRERRMMDFKELFRSVDVLMVDDVQFIAGKDST 330 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L+D KQ++ +ADR P E++ L+ RIRSRLQ G+ V L DYE+R IL Sbjct: 331 QEEFFHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSGLVVDLHPTDYELRLGIL 390 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 ++++ + + P L +++ +L +A ++T+ R L+GA +L F +T E+ + Sbjct: 391 QSKVQNYRLQYPSLQLDDGILEFLAHRISTNVRVLEGALTRLFAFASLVGQPITMELTQD 450 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L+ ++ + +K+ IE+IQR VA+HYNI +DL+ +RVR RPRQVAMYL K +T R Sbjct: 451 CLADVLRASD-RKISIEEIQRKVAEHYNIRLSDLIGPKRVRNFARPRQVAMYLCKQLTAR 509 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S PEIGRRFG RDHTTV+H V+++E++ D + +VELL+R + Sbjct: 510 SLPEIGRRFGGRDHTTVMHGVKRIEELRTQDSQIADDVELLRRAL 554 >gi|84514654|ref|ZP_01002018.1| chromosomal replication initiation protein [Loktanella vestfoldensis SKA53] gi|84511705|gb|EAQ08158.1| chromosomal replication initiation protein [Loktanella vestfoldensis SKA53] Length = 447 Score = 320 bits (820), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 178/468 (38%), Positives = 278/468 (59%), Gaps = 32/468 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V LK +G + Y++W + L+F + + VPTNF+ ++ + + I Sbjct: 5 IWAKVLLTLKGALGVNNYSNWIEPLEFAQLADGVAVFHVPTNFIGNYVSQNFGDQIIYQL 64 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 ++ +Q ++ V V+ K A P+ ++ + + GSP Sbjct: 65 GQQGEDVQRLQFKV-PVSAQVTLKPAPKPTARIVN-----------------VDDISGSP 106 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD+RF F TF+ G N +A AA+ +A+ V NPLF++ VGLGKTHL+ AIA Sbjct: 107 LDARFTFDTFVVGKPNELAHAAARRVAD-----GGPVTFNPLFLYGGVGLGKTHLMHAIA 161 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + +R P L V+YL+AE FM+RF +A+R+ ++ K R++D+L++DD+QF+ GK Sbjct: 162 HELQRRSPELNVLYLSAEQFMYRFITALRERKMMDFKQLFRSVDVLMVDDVQFIAGKDST 221 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L+D KQ++ +ADR P E++ L+ RIRSRLQ G+ V L DYE+R IL Sbjct: 222 QEEFFHTFNALVDGQKQIIISADRAPGEIKDLEDRIRSRLQCGLVVDLHPTDYELRLGIL 281 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 ++++ + P L + VL +A ++T+ R L+GA +L +FA ++ EI EL Sbjct: 282 QSKVDAFSAQYPGLAVAPGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGREINLEL 338 Query: 397 ----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 LS ++ + +K+ +E+IQR V++HYNI +D++ +RVR RPRQ+AMYL+K M Sbjct: 339 TQDCLSDVLKASD-RKVTVEEIQRKVSEHYNIRLSDMIGPKRVRNYARPRQMAMYLAKQM 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGRRFG RDHTTV+H VRK+E++ D + ++ELL+R + Sbjct: 398 TSRSLPEIGRRFGGRDHTTVMHGVRKIEELKLLDSQIADDLELLRRAL 445 >gi|15604451|ref|NP_220969.1| chromosomal replication initiation protein [Rickettsia prowazekii str. Madrid E] gi|2494138|sp|Q59758|DNAA_RICPR RecName: Full=Chromosomal replication initiator protein DnaA gi|1305533|gb|AAA99160.1| DnaA protein [Rickettsia prowazekii] gi|3861145|emb|CAA15045.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA (dnaA) [Rickettsia prowazekii] gi|292572223|gb|ADE30138.1| Chromosomal replication initiator protein DnaA [Rickettsia prowazekii Rp22] Length = 463 Score = 320 bits (820), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 175/470 (37%), Positives = 290/470 (61%), Gaps = 25/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSYVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYAMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALP-SVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +LFQ ++ I+ +EI+ + LP + + SP+ T N+ ++ I+ Sbjct: 74 LQLFQHYNNAIKSIEIITKE--LPGTTQAVIESPTKTFADIGNSALNSENIV-------- 123 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S LD RF F F+ G N +A AA+++AE + + NPLF++ VGLGKTHL Sbjct: 124 ---STLDVRFTFDNFVVGVPNELAYAAARAVAESSGAVFES---NPLFLYGGVGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + P +V+Y++AE FM++F A+R+ + K+ R++D+L+IDD+QF+ Sbjct: 178 MHAIGWYIKQNNPRRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFIC 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+ Sbjct: 238 GKDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYEL 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T Sbjct: 298 RLGILESKI-----EQMNVKIPKDVINFLASKIVSNVRELEGALNKVIAHSNFTLKAITL 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 353 ENTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMYSSRRLREVARPRQIAMYLSK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 412 TLTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKIL 461 >gi|15892839|ref|NP_360553.1| chromosomal replication initiation protein [Rickettsia conorii str. Malish 7] gi|157828772|ref|YP_001495014.1| chromosomal replication initiation protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933500|ref|YP_001650289.1| chromosomal replication initiation protein [Rickettsia rickettsii str. Iowa] gi|20137861|sp|Q92H56|DNAA_RICCN RecName: Full=Chromosomal replication initiator protein DnaA gi|166214699|sp|A8GSY1|DNAA_RICRS RecName: Full=Chromosomal replication initiator protein DnaA gi|189044601|sp|B0BYF7|DNAA_RICRO RecName: Full=Chromosomal replication initiator protein DnaA gi|15620024|gb|AAL03454.1| chromosomal replication initiator protein DnaA [Rickettsia conorii str. Malish 7] gi|157801253|gb|ABV76506.1| chromosomal replication initiation protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908587|gb|ABY72883.1| chromosomal replication initiator protein [Rickettsia rickettsii str. Iowa] Length = 463 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 176/469 (37%), Positives = 291/469 (62%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVTELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKIL 461 >gi|229586943|ref|YP_002845444.1| chromosomal replication initiation protein [Rickettsia africae ESF-5] gi|259645259|sp|C3PP41|DNAA_RICAE RecName: Full=Chromosomal replication initiator protein DnaA gi|228021993|gb|ACP53701.1| Chromosomal replication initiator protein DnaA [Rickettsia africae ESF-5] Length = 463 Score = 319 bits (818), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 176/469 (37%), Positives = 291/469 (62%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVTELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEIHLLMKIL 461 >gi|77464920|ref|YP_354424.1| chromosomal replication initiation protein [Rhodobacter sphaeroides 2.4.1] gi|126460789|ref|YP_001041903.1| chromosomal replication initiation protein [Rhodobacter sphaeroides ATCC 17029] gi|332559819|ref|ZP_08414141.1| chromosomal replication initiation protein [Rhodobacter sphaeroides WS8N] gi|123771654|sp|Q3IY61|DNAA_RHOS4 RecName: Full=Chromosomal replication initiator protein DnaA gi|166214695|sp|A3PFL5|DNAA_RHOS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|77389338|gb|ABA80523.1| chromosomal replication initiator protein DnaA [Rhodobacter sphaeroides 2.4.1] gi|126102453|gb|ABN75131.1| chromosomal replication initiator protein DnaA [Rhodobacter sphaeroides ATCC 17029] gi|332277531|gb|EGJ22846.1| chromosomal replication initiation protein [Rhodobacter sphaeroides WS8N] Length = 455 Score = 319 bits (818), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 173/453 (38%), Positives = 270/453 (59%), Gaps = 24/453 (5%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V L +VG + + +W + L+ + + VPT F W++ + + I E Sbjct: 9 VREGLLKRVGRNNFVTWIEPLRLMGLDEGVARFEVPTLFFGDWVQRNFADHIRMRLTEAG 68 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 S ++ +E V + +++ ++ + + + G+PLD+R Sbjct: 69 SPVERLEFAVSNTPRAPLKEVKAAAPAASPARARPAPPEEDLR----------GAPLDAR 118 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 119 FTFDSFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAHDLQ 173 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 KRQP RV+YL+AE FM+RF A+R+ L K+ R++D+L++DD+QF+ GK Q EF Sbjct: 174 KRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGKDSTQEEF 233 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L DYE+R IL+ + Sbjct: 234 FHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKA 293 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADEL 396 +++ L I + VL +A +TT+ R L+GA +L +FA + +T ++A + Sbjct: 294 DFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLF---AFASLVGREITLDLAQDC 350 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ ++ + +K+ IE+IQR VA+HYNI +D++ +R+RT+ RPRQVAMYL+K +TPRS Sbjct: 351 LADILRASD-RKVTIEEIQRKVAEHYNIRLSDMIGPKRLRTIARPRQVAMYLAKQLTPRS 409 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 PEIGRRFG RDHTT++H VRK+E+++ TD L Sbjct: 410 LPEIGRRFGGRDHTTIMHGVRKIEELMATDSQL 442 >gi|221640841|ref|YP_002527103.1| chromosomal replication initiation protein [Rhodobacter sphaeroides KD131] gi|221161622|gb|ACM02602.1| Chromosomal replication initiator protein dnaA [Rhodobacter sphaeroides KD131] Length = 447 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 172/449 (38%), Positives = 269/449 (59%), Gaps = 24/449 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L +VG + + +W + L+ + + VPT F W++ + + I E S ++ Sbjct: 5 LLKRVGRNNFVTWIEPLRLMGLDEGVARFEVPTLFFGDWVQRNFADHIRMRLTEAGSPVE 64 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E V + +++ ++ + + + G+PLD+RF F Sbjct: 65 RLEFAVSNTPRAPLKEVKAAAPAASPARARPAPPEEDLR----------GAPLDARFTFD 114 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ KRQP Sbjct: 115 SFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAHDLQKRQP 169 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 RV+YL+AE FM+RF A+R+ L K+ R++D+L++DD+QF+ GK Q EF H Sbjct: 170 GARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGKDSTQEEFFHTF 229 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L DYE+R IL+ + + Sbjct: 230 NALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKADFYR 289 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHL 400 ++ L I + VL +A +TT+ R L+GA +L +FA + +T ++A + L+ + Sbjct: 290 EQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLF---AFASLVGREITLDLAQDCLADI 346 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + + +K+ IE+IQR VA+HYNI +D++ +R+RT+ RPRQVAMYL+K +TPRS PEI Sbjct: 347 LRASD-RKVTIEEIQRKVAEHYNIRLSDMIGPKRLRTIARPRQVAMYLAKQLTPRSLPEI 405 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITL 489 GRRFG RDHTT++H VRK+E+++ TD L Sbjct: 406 GRRFGGRDHTTIMHGVRKIEELMATDSQL 434 >gi|254488435|ref|ZP_05101640.1| chromosomal replication initiator protein DnaA [Roseobacter sp. GAI101] gi|214045304|gb|EEB85942.1| chromosomal replication initiator protein DnaA [Roseobacter sp. GAI101] Length = 454 Score = 319 bits (817), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 180/470 (38%), Positives = 277/470 (58%), Gaps = 24/470 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ +T + RL VG + + +W L V I L VPTNF ++ + + I Sbjct: 2 QATWTKIRERLLKTVGKNNFTTWIDPLAVGPVEDGISTLFVPTNFFGNYVSQNFADLILH 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 Q E +I ++ A+ EKTA + + S +P+ Sbjct: 62 EMQSEDDKITRLKF-----AVNRSEKTARPDAPQPRAQAAAPAPAS-----PPANAPLNT 111 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PLD+RF F F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ A Sbjct: 112 APLDARFSFDNFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IA R+P L V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Sbjct: 167 IAQELQIRKPELNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKD 226 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R Sbjct: 227 STQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLG 286 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL++++ QK P L + VL +A +TT+ R L+GA +L +FA ++ EI Sbjct: 287 ILQSKVETQQKNYPGLEVEAGVLEFLAHRITTNVRVLEGALTRLF---AFASLVGREINM 343 Query: 395 EL----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +L L+ ++ E +K+ +E+IQR V++HYNI +D++ +R+R+ RPRQVAMYL K Sbjct: 344 DLTQDCLADVLRASE-RKISVEEIQRKVSEHYNIRLSDMVGPKRLRSYARPRQVAMYLCK 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MT RS PEIGRRFG RDHTTV+H V+++E++ + D + +++ELL+R + Sbjct: 403 KMTSRSLPEIGRRFGGRDHTTVMHGVKRIEELKQNDAQIAEDLELLRRAL 452 >gi|297184288|gb|ADI20405.1| ATPase involved in DNA replication initiation [uncultured alpha proteobacterium EB080_L43F08] Length = 451 Score = 318 bits (816), Expect = 9e-85, Method: Compositional matrix adjust. Identities = 182/471 (38%), Positives = 281/471 (59%), Gaps = 34/471 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ I+ L+ VG + +W L+ S+ + + PT F+ W+ Y ++I F Sbjct: 5 IWPIIKLALRKTVGEAAFTNWINPLELTSINASKANFVTPTKFIGDWVDRNYGDSIKFEF 64 Query: 98 QEEHSRIQG--VEILVRSVAL-PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + QG VE LV SV + P + T + S TK NT + + P Sbjct: 65 AK-----QGLDVERLVFSVNMEPKI--TPAKKSSTKPEAKNTKTGSTDL--------P-- 107 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ LD R+ F F+ G N +A AA+ +AE D V NPLF+H VGLGKTHL+ Sbjct: 108 GASLDPRYTFDNFVVGKPNELAHAAARRVAEGDD-----VSFNPLFLHGGVGLGKTHLMH 162 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA KR PN RV+YL+AE FM+RF A+R ++ K+ R++D+L++DD+QF+ GK Sbjct: 163 AIAWEIKKRDPNARVLYLSAEQFMYRFVQALRFKDTISFKEMFRSVDVLMVDDVQFIAGK 222 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQV+ + DR P ++E L+ RI+SRLQ G+ V + DYE+R Sbjct: 223 SSTQEEFFHTFNALIDQNKQVIISGDRAPVDMEQLEDRIKSRLQWGLVVDVHPTDYELRL 282 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL----T 389 IL+++ + + + ++ VL +A+ ++++ R L+GA +L ++F ++ T Sbjct: 283 GILQSKQESQARYNSTVEVSPGVLEFMAQRISSNVRVLEGALTRL---YAFGSLVGRPVT 339 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A E LS ++ + +K+ I++I R V HY ++ D+LS RR R++ RPRQVAMYLS Sbjct: 340 LEMAQESLSDILRATD-RKVTIDEIIRKVTDHYGVNLTDMLSARRTRSIARPRQVAMYLS 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T +S PEIGRRFG RDHTTV+HAV+K+E++ D + K++E+L+R++ Sbjct: 399 KKLTSKSLPEIGRRFGKRDHTTVIHAVKKIEELQSIDNQIAKDIEVLRRML 449 >gi|144900240|emb|CAM77104.1| chromosomal replication initiator protein DnaA [Magnetospirillum gryphiswaldense MSR-1] Length = 458 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 176/471 (37%), Positives = 277/471 (58%), Gaps = 19/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N E + + RL+++VG Y SW + + H ++ L +PT F++ W+ Y E Sbjct: 2 INAE--WDRIKVRLRDEVGDAAYRSWLRPITLHQAADGMIRLGLPTRFMRDWVATHYGER 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I L+ E+ + +EI+V + +E ++ ++ + T + P Sbjct: 60 IRALWGAENPALHAIEIVVANRT--GLEPAPAAAAVKAATGNVTPLRPRPAAPCAPADVD 117 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G+ LD RF F F+ G N A AA +AE T V NPLF++ VGLGKTHL Sbjct: 118 ELGAQLDPRFTFKNFVVGKPNEFAHAAAVRVAEA-----TAVSFNPLFLYGGVGLGKTHL 172 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AIA+ + P RV+YL+AE FM+RF A+R ++ K+ R++D+L++DD+QF+ Sbjct: 173 MHAIAHHIREHNPARRVLYLSAEKFMYRFIRALRSQDTMSFKEQFRSVDVLMVDDVQFIA 232 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L+D +Q+V +AD+ PS+LE ++ R+RSRL G+ L YE+ Sbjct: 233 GKDATQEEFFHTFNALVDQGRQIVISADKSPSDLEGMEDRLRSRLNSGLVADLHATTYEL 292 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS--FAPILT 389 R IL+ S+ E + ++V+ +A +T++ REL+GA N+ V HS +T Sbjct: 293 RLGILQ-----SKAEQMGAVVPQKVMEFLAHKITSNVRELEGALNR-VIAHSQLVGRSIT 346 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E ++L L+ + +++ IE+IQ+ VA+H+NI ++ S RR R V RPRQVAMYL+ Sbjct: 347 LESTQDVLHDLLKASD-RRITIEEIQKRVAEHFNIKLAEMSSARRSRQVARPRQVAMYLA 405 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T RS PEIGR+FG RDHTTV+HAV+K+E++ +D ++VELL+R++ Sbjct: 406 KQLTSRSLPEIGRKFGGRDHTTVMHAVKKIEELRSSDQGFSEDVELLRRML 456 >gi|326402149|ref|YP_004282230.1| chromosomal replication initiator protein DnaA [Acidiphilium multivorum AIU301] gi|325049010|dbj|BAJ79348.1| chromosomal replication initiator protein DnaA [Acidiphilium multivorum AIU301] Length = 490 Score = 318 bits (816), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 171/465 (36%), Positives = 277/465 (59%), Gaps = 17/465 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL+ ++G Y +W ++ H + + V + +PT FL+ W+ Y +T +Q Sbjct: 40 WSRVRGRLQEEIGEVEYRNWLRQAVLHGLDGDEVTVMLPTRFLRDWVNKEYGNLLTAFWQ 99 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E+ ++ V+I R + +P + ++ P + + P +PL Sbjct: 100 AENPAVRRVDIRTRPAG-----TSERAPDLAEVEPKTAIARPAAAARREAEERPDMSAPL 154 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F TF+ G N A A+ +A+ G+ + NPLF++ VGLGKTHL+ AIA Sbjct: 155 DPRFTFDTFVVGKPNEFAYACARRVAD----GHASPGFNPLFLYGGVGLGKTHLMHAIAW 210 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 +R + V Y++AE FM +F SA+R + K+ LR++D+L++DD+QFL GK Q Sbjct: 211 ELSQRSDEVTVAYMSAEKFMHKFVSALRRQSTIEFKNELRSVDVLMVDDLQFLIGKDGTQ 270 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+DS KQ++ +AD+ PS+L ++ R+R+RL G+ + YE+R +IL+ Sbjct: 271 EEFFHTFNALVDSGKQIIVSADKSPSDLSGIEDRLRTRLGCGMVADVHATTYELRLAILE 330 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADEL 396 + A + P V+ +A+ +T + REL+GA N+L+ + F +T E A E+ Sbjct: 331 AKAARAGVVVPG-----RVMEFLAQKITANVRELEGALNRLIAHANLFERPVTLETAHEV 385 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ + +K+ IE+IQ+ VA+HYNI +++ S RR R + RPRQ+AMYL+K +T RS Sbjct: 386 LHDLLRAYD-RKITIEEIQKQVAEHYNIRVSEMSSARRARNIARPRQIAMYLAKQLTSRS 444 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 PEIGR+FG+RDHTTV+HAV KV +++E D ++VELL+R+++ Sbjct: 445 LPEIGRKFGNRDHTTVMHAVSKVTELIEADPDFAEDVELLRRILT 489 >gi|148259022|ref|YP_001233149.1| chromosomal replication initiation protein [Acidiphilium cryptum JF-5] gi|146400703|gb|ABQ29230.1| chromosomal replication initiator protein DnaA [Acidiphilium cryptum JF-5] Length = 482 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 171/465 (36%), Positives = 277/465 (59%), Gaps = 17/465 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL+ ++G Y +W ++ H + + V + +PT FL+ W+ Y +T +Q Sbjct: 32 WSRVRGRLQEEIGEVEYRNWLRQAVLHGLDGDEVTVMLPTRFLRDWVNKEYGNLLTAFWQ 91 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E+ ++ V+I R + +P + ++ P + + P +PL Sbjct: 92 AENPAVRRVDIRTRPAG-----TSERAPDLAEVEPKTAIARPAAAARREAEERPDMSAPL 146 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F TF+ G N A A+ +A+ G+ + NPLF++ VGLGKTHL+ AIA Sbjct: 147 DPRFTFDTFVVGKPNEFAYACARRVAD----GHASPGFNPLFLYGGVGLGKTHLMHAIAW 202 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 +R + V Y++AE FM +F SA+R + K+ LR++D+L++DD+QFL GK Q Sbjct: 203 ELSQRSDEVTVAYMSAEKFMHKFVSALRRQSTIEFKNELRSVDVLMVDDLQFLIGKDGTQ 262 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+DS KQ++ +AD+ PS+L ++ R+R+RL G+ + YE+R +IL+ Sbjct: 263 EEFFHTFNALVDSGKQIIVSADKSPSDLSGIEDRLRTRLGCGMVADVHATTYELRLAILE 322 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADEL 396 + A + P V+ +A+ +T + REL+GA N+L+ + F +T E A E+ Sbjct: 323 AKAARAGVVVPG-----RVMEFLAQKITANVRELEGALNRLIAHANLFERPVTLETAHEV 377 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ + +K+ IE+IQ+ VA+HYNI +++ S RR R + RPRQ+AMYL+K +T RS Sbjct: 378 LHDLLRAYD-RKITIEEIQKQVAEHYNIRVSEMSSARRARNIARPRQIAMYLAKQLTSRS 436 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 PEIGR+FG+RDHTTV+HAV KV +++E D ++VELL+R+++ Sbjct: 437 LPEIGRKFGNRDHTTVMHAVSKVTELIEADPDFAEDVELLRRILT 481 >gi|157964743|ref|YP_001499567.1| chromosomal replication initiation protein [Rickettsia massiliae MTU5] gi|167016904|sp|A8F284|DNAA_RICM5 RecName: Full=Chromosomal replication initiator protein DnaA gi|157844519|gb|ABV85020.1| Chromosomal replication initiator protein DnaA [Rickettsia massiliae MTU5] Length = 463 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 175/469 (37%), Positives = 292/469 (62%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP + +T + + I ++ + I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGITQTVIALPTKTFADIGSSELNAENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKIL 461 >gi|67458756|ref|YP_246380.1| chromosomal replication initiation protein [Rickettsia felis URRWXCal2] gi|75536787|sp|Q4UMJ3|DNAA_RICFE RecName: Full=Chromosomal replication initiator protein DnaA gi|67004289|gb|AAY61215.1| Chromosomal replication initiator protein DnaA [Rickettsia felis URRWXCal2] Length = 463 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 176/469 (37%), Positives = 290/469 (61%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVIELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKIL 461 >gi|83855142|ref|ZP_00948672.1| chromosomal replication initiation protein [Sulfitobacter sp. NAS-14.1] gi|83941665|ref|ZP_00954127.1| chromosomal replication initiation protein [Sulfitobacter sp. EE-36] gi|83842985|gb|EAP82152.1| chromosomal replication initiation protein [Sulfitobacter sp. NAS-14.1] gi|83847485|gb|EAP85360.1| chromosomal replication initiation protein [Sulfitobacter sp. EE-36] Length = 452 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 176/465 (37%), Positives = 270/465 (58%), Gaps = 27/465 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 +T + RL VG + + +W L + I L VPTNF ++ + + + Q Sbjct: 6 WTTIRDRLLKTVGQNNFTTWIDPLTVGPIEDGICTLFVPTNFFGNYVSQNFADLLLHEMQ 65 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E I ++ V P+ A + + N S + +PL Sbjct: 66 SEDISISRLKFAVAPQDKPAAIDPAPARPKPAAAAQPAN-------------SQINAAPL 112 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+RF F F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 113 DARFSFDNFVVGKPNELAHAAARRVAE-----GGPVTFNPLFLYGGVGLGKTHLMHAIAQ 167 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 R+P L V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Q Sbjct: 168 ELQVRKPELNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKDSTQ 227 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R IL+ Sbjct: 228 EEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQ 287 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL- 396 N++ +K P L + VL +A +TT+ R L+GA +L +FA ++ EI +L Sbjct: 288 NKVEAQRKNYPGLEVEAGVLEFLAHRITTNVRVLEGALTRLF---AFASLVGREINMDLT 344 Query: 397 ---LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L+ ++ E +K+ +E+IQR V++HYNI +D++ +R+R+ RPRQVAMYL K MT Sbjct: 345 QDCLADVLRASE-RKVSVEEIQRKVSEHYNIRLSDMVGPKRLRSYARPRQVAMYLCKKMT 403 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RS PEIGRRFG RDHTTV+H V+++E++ + D + +++ELL+R Sbjct: 404 SRSLPEIGRRFGGRDHTTVMHGVKRIEELKQNDGQIAEDLELLRR 448 >gi|157803546|ref|YP_001492095.1| chromosomal replication initiation protein [Rickettsia canadensis str. McKiel] gi|166214698|sp|A8EY77|DNAA_RICCK RecName: Full=Chromosomal replication initiator protein DnaA gi|157784809|gb|ABV73310.1| hypothetical protein A1E_01825 [Rickettsia canadensis str. McKiel] Length = 463 Score = 318 bits (814), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 176/469 (37%), Positives = 285/469 (60%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYLNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ VEI+ + LP KT + I ++ + I Sbjct: 74 LQLFQHYNNTIKSVEIITKE--LPGTSKTVIELPTKTFADIGSSELNAENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGVPNELAYAAARAVAESTD---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + PN +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPNRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQIVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I + V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKNVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKT 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKIL 461 >gi|159045913|ref|YP_001534707.1| chromosomal replication initiation protein [Dinoroseobacter shibae DFL 12] gi|157913673|gb|ABV95106.1| chromosomal replication initiation protein [Dinoroseobacter shibae DFL 12] Length = 460 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 180/470 (38%), Positives = 272/470 (57%), Gaps = 19/470 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E + V + L VG + Y +W + LKF +V P++F+ W+ Y E I Sbjct: 3 EDTWGSVQNDLLKTVGQNNYLTWIEPLKFADCRGGVVRFEAPSSFVGNWVARNYREDIL- 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP--IILGKQTISPV 153 H GVE V+ + V K A + + ++ SP + + K S Sbjct: 62 ----HHLVSAGVE--VKRIEF-DVAKLAQAARQVRPKGTERTMTPSPGDVAMDKPVPSAS 114 Query: 154 FGS-PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S PLD R FS F+ G N +A +A+ +AE V NPLF++ VGLGKTHL Sbjct: 115 LQSAPLDPRLTFSNFVVGKPNELAHASARRVAE-----GGPVSFNPLFLYGGVGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AIA + R P L+V+YL+AE FM+RF A+RD + K+ R++DLL++DD+QF+ Sbjct: 170 MHAIAWEAQARNPGLKVLYLSAEQFMYRFVRALRDRNTMEFKELFRSVDLLMVDDVQFIA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L+D KQ++ +ADR P E++ L+ RI+SRL G+ V + DYE+ Sbjct: 230 GKDSTQDEFFHTFNALVDQNKQIIISADRAPGEIDGLEDRIKSRLSCGLVVDIHPTDYEL 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTA 390 R +L+ RL + + + VL +A+ ++T+ R L+GA N+L+ F +T Sbjct: 290 RLGVLQQRLQDQIAAGETIAVEDGVLECLAQRISTNVRVLEGALNRLIAFSDLVGRRITL 349 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E LS L+ + KK+ +++I + VAK+YN+ DLL RR RT+ RPRQ+AMYL+K Sbjct: 350 DLAHEALSDLIRAHD-KKVTVDEIMQAVAKYYNLRMTDLLGPRRTRTIARPRQLAMYLAK 408 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T RS PEIGRRFG RDHTTV+HAV+++E + ++D + ++V L R + Sbjct: 409 TLTTRSLPEIGRRFGGRDHTTVIHAVKRIEALCDSDPQISEDVRSLLRTL 458 >gi|57239018|ref|YP_180154.1| chromosomal replication initiation protein [Ehrlichia ruminantium str. Welgevonden] gi|58578957|ref|YP_197169.1| chromosomal replication initiation protein [Ehrlichia ruminantium str. Welgevonden] gi|58617015|ref|YP_196214.1| chromosomal replication initiation protein [Ehrlichia ruminantium str. Gardel] gi|71151797|sp|Q5FHH8|DNAA_EHRRG RecName: Full=Chromosomal replication initiator protein DnaA gi|71151798|sp|Q5HBP0|DNAA_EHRRW RecName: Full=Chromosomal replication initiator protein DnaA gi|57161097|emb|CAH58004.1| chromosomal replication initiator protein DnaA [Ehrlichia ruminantium str. Welgevonden] gi|58416627|emb|CAI27740.1| Chromosomal replication initiator protein DNAA [Ehrlichia ruminantium str. Gardel] gi|58417583|emb|CAI26787.1| Chromosomal replication initiator protein DNAA [Ehrlichia ruminantium str. Welgevonden] Length = 464 Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 183/493 (37%), Positives = 285/493 (57%), Gaps = 32/493 (6%) Query: 10 IQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH 69 + ++ E+ E P + L+ N I+ + SRL G +Y SW L + S Sbjct: 1 MNNDNTEVLENYP-----QDGLQSNSHIIWKGIQSRLHKFYGNAIYDSWLSVLLYVSTES 55 Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT 129 V LS PT F+K WI YL+ I K +Q+E I V+I V S P++ Sbjct: 56 GKVLLSAPTRFIKEWILVHYLDQILKYWQDEDQSICSVDICVVSNQDPNL---------- 105 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 L I + + G + SPLD RF F F+ G N +A AA+ +AE +S Sbjct: 106 -LVDIKDRVDR-----GIKGNCDNVSSPLDPRFTFDNFVVGKPNELAFAAARRVAESNSP 159 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 + NPLF++ VGLGKTHL+ AIA IK ++ YL+AE FM+++ +A+R Sbjct: 160 ISGS---NPLFLYGGVGLGKTHLMHAIAWYIIKSCSKRKIAYLSAEKFMYQYVTALRSKD 216 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K+ R++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ + Sbjct: 217 IMLFKEQFRSVDILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGV 276 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + RI+SRL G+ + +E+R IL+ ++ E +NI +VL +A+ + ++ Sbjct: 277 EERIKSRLGWGLVADINETTFELRLGILQLKV-----EKMGINIPNKVLEFLAKNIKSNI 331 Query: 369 RELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA N++V S +T + A ++LS L+ K + +E IQ+ VA+ +NI + Sbjct: 332 RELEGALNKVVAHSSLVGCSITLDTASDILSDLLRANH-KSVTLECIQKKVAEFFNIKVS 390 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+ S RR+RT+ RPRQ+AMYLSK +T +S PEIG+ FG RDH TV+HAV+++EK+++TD Sbjct: 391 DMYSTRRLRTLARPRQIAMYLSKKLTQKSLPEIGKSFGGRDHATVIHAVKQIEKLMDTDS 450 Query: 488 TLKKEVELLKRLI 500 L+ ++ LL R++ Sbjct: 451 KLRDDINLLNRML 463 >gi|310816811|ref|YP_003964775.1| chromosomal replication initiation protein [Ketogulonicigenium vulgare Y25] gi|308755546|gb|ADO43475.1| chromosomal replication initiation protein [Ketogulonicigenium vulgare Y25] Length = 468 Score = 317 bits (812), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 177/470 (37%), Positives = 279/470 (59%), Gaps = 23/470 (4%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V LK VG + + +W L+ S+ + SVPTNF+ ++ + E I Sbjct: 9 VQDNLKAAVGVNNFTNWIAPLELDSLADGVATFSVPTNFIGNYVSTNFGELILYHLNRLG 68 Query: 102 SRIQGVEILVRSVALPSVEKT--ASSP----SITKLSPINTNISKSPIILGKQTISPVFG 155 ++Q + + + A PS+ A++P +L+ + + K P Sbjct: 69 IQVQRLGFIA-AAARPSLRGGLRAATPRRVGGAARLAEPAAPEAPAAPAPAKSNAIPA-- 125 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + LD+R+ F FI G SN +A AA+ +A+ G+ NPLF++ VGLGKTHL+ A Sbjct: 126 AQLDARYTFDRFIVGKSNELAYAAARRVAQGGPVGF-----NPLFMYGGVGLGKTHLMHA 180 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IA+ ++QP+L V+YL+AE FM+RF SA+RD AL+ K LR++D+L+IDD+QF+ GK Sbjct: 181 IAHELRRQQPDLNVLYLSAEQFMYRFVSALRDKKALDFKAMLRSVDVLMIDDVQFIAGKE 240 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L+D+ KQV+ ++DR P E+ ++ RI SRLQ G+ V L D+ +R Sbjct: 241 STQEEFFHTFNALVDAQKQVIISSDRAPGEIRDINDRISSRLQAGLVVDLHPSDFTLRLG 300 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA- 393 +L++R + P + + E+VL +A ++++ R L+GA +L +FA ++ I+ Sbjct: 301 VLESRAKTAAAAYPHVVLEEDVLPFLAHRISSNIRVLEGALTRLF---AFAGLVNKSISI 357 Query: 394 ---DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + L+ ++ E +K+ +EDIQR V +HYNI D++ RRVR RPRQVAMYLSK Sbjct: 358 ALTQDCLADILRASE-RKVTVEDIQRRVCEHYNIRIADMVGPRRVRAFARPRQVAMYLSK 416 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MT RS PEIGR FG RDHTT++H V+K+E+++ +D + ++++LKR + Sbjct: 417 KMTSRSLPEIGRHFGGRDHTTIMHGVKKIEQLISSDSQMADDLKVLKRAL 466 >gi|34581452|ref|ZP_00142932.1| chromosomal replication initiator protein DnaA [Rickettsia sibirica 246] gi|28262837|gb|EAA26341.1| chromosomal replication initiator protein DnaA [Rickettsia sibirica 246] Length = 463 Score = 317 bits (811), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 175/469 (37%), Positives = 290/469 (61%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T ++ I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVTALPTKTFGDIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDIRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++L DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLANDIELREEINLLMKIL 461 >gi|86139417|ref|ZP_01057986.1| chromosomal replication initiation protein [Roseobacter sp. MED193] gi|85823920|gb|EAQ44126.1| chromosomal replication initiation protein [Roseobacter sp. MED193] Length = 472 Score = 316 bits (810), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 177/467 (37%), Positives = 278/467 (59%), Gaps = 21/467 (4%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +RL VG + + +W + L+F+SV + VPTNF+ ++ + + I F Sbjct: 11 TRLLKTVGQNNFTTWIEPLEFNSVDDGVAVFHVPTNFMGNYVSQNFADLILHEFSLSGEP 70 Query: 104 IQ--GVEILVRSVALP--SVEKTA---SSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 +Q + S A P VE+ A + T + +T +S S + + + Sbjct: 71 VQRLAFRVAANSPARPVRQVEQPAEPFAEMQETGNTGASTGMSLSDKAAAAAPMDTLQAA 130 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD RF F F+ G N +A AA+ +AE V NPL ++ VGLGKTHL+ AI Sbjct: 131 PLDPRFTFDNFVVGKPNELAHAAARRVAEGGP-----VTFNPLVLYGGVGLGKTHLMHAI 185 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 A + P+L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ GK Sbjct: 186 AWEITVQNPSLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDS 245 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R I Sbjct: 246 TQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGI 305 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ ++ + Q+ P L I + VL +A ++T+ R L+GA +L +FA ++ EI + Sbjct: 306 LQTKVQLQQQTYPDLEIADGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGREIDMD 362 Query: 396 L----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 L L+ ++ E +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMYL K Sbjct: 363 LTQDCLADVLRASE-RKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVAMYLCKK 421 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +T RS PEIGRRFG RDHTTV+H VR++E++ TD + ++VE+L+R Sbjct: 422 LTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKSTDGQIAEDVEMLRR 468 >gi|239947628|ref|ZP_04699381.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921904|gb|EER21928.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] Length = 463 Score = 315 bits (807), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 175/469 (37%), Positives = 289/469 (61%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMII 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVIELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP+S +IG++FG +DHTTV+HA++KVE++L+ DI L +E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLKNDIELSEEINLLMKIL 461 >gi|85705685|ref|ZP_01036782.1| chromosomal replication initiation protein [Roseovarius sp. 217] gi|85669675|gb|EAQ24539.1| chromosomal replication initiation protein [Roseovarius sp. 217] Length = 450 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 180/464 (38%), Positives = 274/464 (59%), Gaps = 29/464 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + +L+ VG + +W + L+F V + VPT+FL ++ + + I L+Q Sbjct: 9 LKQKLQQSVGQSNFKNWIEPLEFARVDDGVATFHVPTSFLGNYVSQHFGDLI--LYQ--- 63 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 + + VR V +A+ PS + T S Q S V +PLD R Sbjct: 64 --MTTLAPHVRRVQFRVAANSANRPSKPVAAAAATPES--------QIDSIVPSAPLDER 113 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 114 FTFDSFVVGKPNELAHAAARRVAECGP-----VTFNPLFLYGGVGLGKTHLMHAIAWELK 168 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 +P+L VVYL+AE FM+RF A+RD ++ K R++D+L++DD+QF+ GK Q EF Sbjct: 169 TTRPDLNVVYLSAEQFMYRFVQALRDRKMMDFKSVFRSVDVLMVDDVQFIAGKDSTQEEF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L+D KQ+V +ADR P E+ +L+ RI+SRLQ G+ V L DYE+R IL++++ Sbjct: 229 FHTFNALVDQNKQIVISADRAPGEIANLEERIKSRLQCGLVVDLHPTDYELRLGILQSKV 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADEL 396 + + P L +++ VL +A +TT+ R L+GA +L +FA + +T E+ + Sbjct: 289 DRFRAQYPDLTLHDGVLEFLAHRITTNVRVLEGAMTRLF---AFASLVRKPITLELTQDC 345 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ ++ E +K+ IE+IQR V+ HYNI +D++ +R R RPRQVAMYL K MT RS Sbjct: 346 LADVLRASE-RKVSIEEIQRKVSDHYNIRLSDMIGPKRTRCYARPRQVAMYLCKQMTSRS 404 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PEIGRRFG RDHTT++H VR++E++ D + +++ELL+R + Sbjct: 405 LPEIGRRFGGRDHTTIMHGVRRIEELSLQDGQIAEDLELLRRTL 448 >gi|163745035|ref|ZP_02152395.1| chromosomal replication initiation protein [Oceanibulbus indolifex HEL-45] gi|161381853|gb|EDQ06262.1| chromosomal replication initiation protein [Oceanibulbus indolifex HEL-45] Length = 453 Score = 314 bits (805), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 179/476 (37%), Positives = 275/476 (57%), Gaps = 50/476 (10%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + RL VG + Y +W + L V IV L VPTNF ++ + + I Sbjct: 9 IKERLLKTVGQNNYTTWIEPLVPGDVEDGIVTLKVPTNFFGNYVSQNFSDLILH------ 62 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLS-PIN---TNISKSPIILGKQT---ISPVF 154 E A+ T+L+ +N N + P +QT + P Sbjct: 63 ------------------EINAAGTDATRLNFALNQQPANAADKPAPAARQTTAAVKPTA 104 Query: 155 GS-----PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S PLD RF F F+ G N +A AA+ +AE V NPLF++ VGLGK Sbjct: 105 NSQLSTAPLDPRFSFDNFVVGKPNELAHAAARRVAE-----GGPVTFNPLFLYGGVGLGK 159 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AIA +R+P++ V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+Q Sbjct: 160 THLMHAIARELHERRPDMNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQ 219 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L D Sbjct: 220 FIAGKDSTQEEFFHTFNALVDQHKQIIISADRAPGEIKDLEDRVKSRLQCGLIVDLHPTD 279 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YE+R IL++++ + +K P L + + VL +A +T++ R L+GA +L +FA ++ Sbjct: 280 YELRLGILQSKVEVQRKTYPDLEVADGVLEFLAHRITSNVRVLEGALTRLF---AFASLV 336 Query: 389 TAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 EI + L+ ++ E +K+ +E+IQR V+ HYNI +D++ +R+R+ RPRQV Sbjct: 337 GREIDMGLTQDCLADVLRASE-RKISVEEIQRKVSDHYNIRLSDMIGPKRLRSYARPRQV 395 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYL K MT RS PEIGRRFG RDHTTV+H VR++E++ +D + +++ELL+R + Sbjct: 396 AMYLCKQMTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKVSDGQIAEDLELLRRAL 451 >gi|114769644|ref|ZP_01447254.1| chromosomal replication initiation protein [alpha proteobacterium HTCC2255] gi|114549349|gb|EAU52231.1| chromosomal replication initiation protein [alpha proteobacterium HTCC2255] Length = 451 Score = 313 bits (803), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 177/468 (37%), Positives = 277/468 (59%), Gaps = 28/468 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ I+ L+ VG + +W L+ S+ + + PT F+ W+ Y ++I F Sbjct: 5 IWPIIKLALRKTVGEAAFTNWINPLELTSINASKANFVTPTKFIGDWVDRNYGDSIKFEF 64 Query: 98 QEEHSRIQGVEI--LVRSVAL-PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + QG++I LV SV + P + T S + P + N K + + Sbjct: 65 AK-----QGLDIERLVFSVNMEPKIAPTKKS----SIKPESKNT--------KTGSTDLP 107 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ LD R+ F F+ G N +A AA+ ++E V NPLF+H VGLGKTHL+ Sbjct: 108 GASLDPRYTFDNFVVGKPNELAHAAARRVSEGGD-----VSFNPLFLHGGVGLGKTHLMH 162 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA KR PN RV+YL+AE FM+RF A+R ++ K+ R++D+L++DD+QF+ GK Sbjct: 163 AIAWEIKKRDPNARVLYLSAEQFMYRFVQALRFKDTISFKEMFRSVDVLMVDDVQFIAGK 222 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQV+ + DR P ++E L+ RI+SRLQ G+ V + DYE+R Sbjct: 223 SSTQEEFFHTFNALIDQNKQVIISGDRAPVDMEQLEDRIKSRLQWGLVVDVHPTDYELRL 282 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEI 392 IL+++ + + + ++ VL +A+ ++++ R L+GA +L F +T E+ Sbjct: 283 GILQSKQESQARYNSTVEVSPGVLEFMAQRISSNVRVLEGALTRLYAFGSLVGRPVTLEM 342 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E LS ++ + +K+ I++I R V HY ++ D+LS RR R++ RPRQVAMYLSK + Sbjct: 343 AQESLSDILRATD-RKVTIDEIIRKVTDHYGVNLTDMLSARRTRSIARPRQVAMYLSKKL 401 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T +S PEIGRRFG RDHTTV+HAV+K+E++ D + K++E+L+R++ Sbjct: 402 TSKSLPEIGRRFGKRDHTTVIHAVKKIEELQSIDNQIAKDIEVLRRML 449 >gi|83950590|ref|ZP_00959323.1| chromosomal replication initiation protein [Roseovarius nubinhibens ISM] gi|83838489|gb|EAP77785.1| chromosomal replication initiation protein [Roseovarius nubinhibens ISM] Length = 468 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 177/462 (38%), Positives = 269/462 (58%), Gaps = 21/462 (4%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LK VG + + +W L+ V + +VPT+F ++ + + I H R Sbjct: 23 LKKTVGSNNFTTWIAPLELDDVAGEVASFAVPTSFFGNYVAQTFGDQILY-----HLRAI 77 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 I + A+PS +P P T P +PLD RF F Sbjct: 78 DPSIRRVNFAVPSTASNDPQAPRRAPAPRPKAAPSEPAETMADTRIPT--APLDPRFKFD 135 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA ++QP Sbjct: 136 TFVVGKPNELAHAAAKRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAWELQEQQP 190 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 L VVYL+AE FM+RF A+R+ ++ K+ R++D+L++DD+QF+ GK Q EF H Sbjct: 191 GLNVVYLSAEQFMYRFVQALRERKMMDFKEMFRSVDVLMVDDVQFIAGKDSTQEEFFHTF 250 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L+D KQ++ +AD P E+E+L+ RIRSRLQ G+ V L +YE+R IL++++ + Sbjct: 251 NALVDQRKQIIISADCAPGEIENLEERIRSRLQCGLVVDLHPTNYELRLGILQSKVEYYR 310 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL----LSHL 400 + P L + + VL +A +T + R L+GA +L +FA ++ EI EL L+ + Sbjct: 311 GQYPDLMLADGVLEFLAHRITKNVRVLEGALTRLF---AFASLVGQEITLELTQDCLADV 367 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + E +++ IE+IQR V++HYNI +DL+ +R+R RPRQ+AM+L K MT RS PEI Sbjct: 368 LRASE-RQVTIEEIQRQVSEHYNIRLSDLVGPKRLRVYARPRQMAMFLCKQMTSRSLPEI 426 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 GRRFG RDHTTV+H VR++E++ D+ + +++ELL+R + E Sbjct: 427 GRRFGGRDHTTVMHGVRRIEELSRKDVQIAEDIELLRRTLEE 468 >gi|99079842|ref|YP_611996.1| chromosomal replication initiation protein [Ruegeria sp. TM1040] gi|123252667|sp|Q1GKT2|DNAA_SILST RecName: Full=Chromosomal replication initiator protein DnaA gi|99036122|gb|ABF62734.1| chromosomal replication initiator protein DnaA [Ruegeria sp. TM1040] Length = 470 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 175/477 (36%), Positives = 281/477 (58%), Gaps = 25/477 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + ++ RL VG + + +W + L+ V + VPTNF+ ++ + + I Sbjct: 2 TDDTWGLLRKRLLKTVGQNNFTTWIEPLELDQVDGGVATFHVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ-----T 149 F + +Q + V + + + S +I + +P+ T + LG Q Sbjct: 62 HEFNKSGEAVQRLAFKVAANSPTRPVQPTMSEAIEEPAPLQTTVVDQ---LGNQEGNTSV 118 Query: 150 ISP---VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 SP + +PLD RF F +F+ G N +A AA+ +AE V NPL ++ VG Sbjct: 119 KSPPEDLQAAPLDPRFTFDSFVVGKPNELAHAAARRVAEGGP-----VTFNPLVLYGGVG 173 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AIA +R P L V+YL+AE FM+RF A+R+ ++ K R++D+L++D Sbjct: 174 LGKTHLMHAIAWELKERNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVD 233 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L Sbjct: 234 DVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLH 293 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 DYE+R IL+ ++ ++K P L I + VL +A ++T+ R L+GA +L +FA Sbjct: 294 PTDYELRLGILQTKVQQNRKNYPDLKIADGVLELLAHRISTNVRVLEGALTRLF---AFA 350 Query: 386 PILTAEIADEL----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 ++ EI +L L+ ++ E +K+ +E+IQR V+++YNI +D++ +R+R+ RP Sbjct: 351 SLVGREIDMDLTQDCLADVLRASE-RKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARP 409 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RQVAMYL K +T RS PEIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R Sbjct: 410 RQVAMYLCKQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRR 466 >gi|254509739|ref|ZP_05121806.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae bacterium KLH11] gi|221533450|gb|EEE36438.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae bacterium KLH11] Length = 460 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 168/464 (36%), Positives = 281/464 (60%), Gaps = 23/464 (4%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++L VG + + +W + LKF + + SVPTNF+ ++ + + I Sbjct: 11 NKLMKAVGKNNFTTWIEPLKFQELQDGVAVFSVPTNFMGNYVSQNFADLILYELNTSGES 70 Query: 104 IQGVEILVRSVALPSVEKTASSPSITK-LSPINTNISKSPII-LGKQTISPVFGSPLDSR 161 +Q +A + +++ P++T+ P++T ++ + ++ + +PLD+R Sbjct: 71 VQ-------RLAFRTAANSSARPTLTEETKPLSTPDARPSVAETHSDSLEALQAAPLDAR 123 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F +F+ G N +A AA+ ++E V NPL ++ VGLGKTHL+ AIA Sbjct: 124 FTFDSFVVGKPNELAHAAARRVSEGGP-----VTFNPLVLYGGVGLGKTHLMHAIAWELK 178 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 + P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ GK Q EF Sbjct: 179 TKSPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEF 238 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R IL+N++ Sbjct: 239 FHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLGILQNKV 298 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL---- 396 P L I++ VL +A+ ++T+ R L+GA +L +FA ++ EI +L Sbjct: 299 QQYSSTYPDLTISDGVLEFLAQRISTNVRVLEGALTRLF---AFASLVGREIDMDLTQDC 355 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ ++ E +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMYL K +T RS Sbjct: 356 LADVLRMSE-RKITVEEIQRKVSEYYNIRLSDIIGPKRLRSYARPRQVAMYLCKQLTSRS 414 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PEIGRRFG RDHTTV+H V+++E++ TD + ++VE+L+R + Sbjct: 415 LPEIGRRFGGRDHTTVMHGVKRIEELKLTDGQIAEDVEMLRRAL 458 >gi|114762142|ref|ZP_01441610.1| chromosomal replication initiation protein [Pelagibaca bermudensis HTCC2601] gi|114545166|gb|EAU48169.1| chromosomal replication initiation protein [Roseovarius sp. HTCC2601] Length = 451 Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 168/462 (36%), Positives = 273/462 (59%), Gaps = 16/462 (3%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVL-HNIVHLSVPTNFLKAWIKNRYLETITKLFQEE 100 + S+L + +G + Y +W + ++FH V + +VPTNF+ ++ + + + Sbjct: 1 MQSQLSSTIGENNYKTWIEPMEFHGVEPGGVAVFNVPTNFIGTYVSQNFGDILL------ 54 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 +++ G++ VR + + +P + G+PLD Sbjct: 55 -AKLSGMDTDVRRLKFQVANADTRPAPAQQQPRPAAQAQPAPAAAAPANSDLLPGAPLDG 113 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 114 RFTFDSFVVGKPNELAHAAAKRVAEGGQ-----VTFNPLFLYGGVGLGKTHLMHAIAWDL 168 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 +P+L V+YL+AE FM+RF A+R+ ++ K+ R++D+L++DD+QF+ GK Q E Sbjct: 169 RNNRPDLNVLYLSAEQFMYRFVQALRERRMMDFKELFRSVDVLMVDDVQFIAGKDSTQEE 228 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L+D KQ++ +ADR P E++ L+ RIRSRLQ G+ V L DYE+R IL+++ Sbjct: 229 FFHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSGLVVDLHPTDYELRLGILQSK 288 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLS 398 + +++ P L +++ +L +A ++T+ R L+GA +L F +T E+ + L+ Sbjct: 289 VQNYREQYPALQLDDGILEFLAHRISTNVRVLEGALTRLFAFASLVGQPITMELTQDCLA 348 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ + +K+ IE+IQR VA+HY+I +DL+ +RVR RPRQVAMYL K +T RS P Sbjct: 349 DVLRASD-RKISIEEIQRKVAEHYHIRLSDLIGPKRVRNFARPRQVAMYLCKQLTARSLP 407 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 EIGRRFG RDHTTV+H V+++E++ D + +VELL+R + Sbjct: 408 EIGRRFGGRDHTTVMHGVKRIEELRTQDSQIADDVELLRRAL 449 >gi|260431698|ref|ZP_05785669.1| chromosomal replication initiator protein DnaA [Silicibacter lacuscaerulensis ITI-1157] gi|260415526|gb|EEX08785.1| chromosomal replication initiator protein DnaA [Silicibacter lacuscaerulensis ITI-1157] Length = 467 Score = 313 bits (801), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 175/467 (37%), Positives = 282/467 (60%), Gaps = 26/467 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++L VG + + +W + L+F + + SVPTNF+ ++ + + I E ++ Sbjct: 15 NKLLKAVGRNNFTTWIEPLEFQELNGGVAVFSVPTNFMGNYVSQNFADLI---LYELNTA 71 Query: 104 IQGVEILVRSVAL-----PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + V+ LV VA P+ E A+ I + + I+ + S +G + + +PL Sbjct: 72 GESVQRLVFRVAANTPARPATEAPAAE-DIPQTAEIDAPVEAS---VGSNALESLQAAPL 127 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+RF F TF+ G N +A AA+ ++E V NPL ++ VGLGKTHL+ AIA Sbjct: 128 DARFTFDTFVVGKPNELAHAAARRVSEGGP-----VTFNPLVLYGGVGLGKTHLMHAIAW 182 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 ++P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ GK Q Sbjct: 183 ELKTKRPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGKDSTQ 242 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R IL+ Sbjct: 243 EEFFHTFNALVDQNKQIIISADRAPGEIKDLEERVKSRLQCGLVVDLHPTDYELRLGILQ 302 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL- 396 ++ K P L I + VL +A ++T+ R L+GA +L +FA ++ EI +L Sbjct: 303 TKVQQYTKTYPDLKIADGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGREIDMDLT 359 Query: 397 ---LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L+ ++ E +K+ +E+IQR V+ +YNI +D++ +R+R+ RPRQVAMYL K +T Sbjct: 360 QDCLADVLRASE-RKITVEEIQRKVSDYYNIRLSDIIGPKRLRSYARPRQVAMYLCKQLT 418 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RS PEIGRRFG RDHTTV+H V+++E++ TD + ++VE+L+R + Sbjct: 419 SRSLPEIGRRFGGRDHTTVMHGVKRIEELKLTDGQIAEDVEMLRRAL 465 >gi|259417770|ref|ZP_05741689.1| chromosomal replication initiator protein DnaA [Silicibacter sp. TrichCH4B] gi|259346676|gb|EEW58490.1| chromosomal replication initiator protein DnaA [Silicibacter sp. TrichCH4B] Length = 470 Score = 313 bits (801), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 169/474 (35%), Positives = 278/474 (58%), Gaps = 19/474 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + ++ RL VG + + +W + L+ V + VPTNF+ ++ + + I Sbjct: 2 TDDTWGLLRKRLLKTVGQNNFTTWIEPLELDQVDGGVATFHVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVA-----LPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 F + +Q + V + + P+V + P+ + ++ ++ K Sbjct: 62 HEFNKSGEPVQRLAFKVAANSPTRPVQPTVSEAIEEPTPAPTTIVDQGTTQEGNASVKSP 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + + +PLD RF F +F+ G N +A AA+ + E V NPL ++ VGLGK Sbjct: 122 LEELQAAPLDPRFTFDSFVVGKPNELAHAAARRVGEGGP-----VTFNPLVLYGGVGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AIA +R P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+Q Sbjct: 177 THLMHAIAWELKERNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQ 236 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L D Sbjct: 237 FIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTD 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YE+R IL+ ++ ++K P L I + VL +A ++T+ R L+GA +L +FA ++ Sbjct: 297 YELRLGILQTKVQQNRKNYPDLKIADGVLELLAHRISTNVRVLEGALTRLF---AFASLV 353 Query: 389 TAEIADEL----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 EI +L L+ ++ E +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQV Sbjct: 354 GREIDMDLTQDCLADVLRASE-RKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQV 412 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 AMYL K +T RS PEIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R Sbjct: 413 AMYLCKQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRR 466 >gi|149202937|ref|ZP_01879908.1| chromosomal replication initiation protein [Roseovarius sp. TM1035] gi|149143483|gb|EDM31519.1| chromosomal replication initiation protein [Roseovarius sp. TM1035] Length = 448 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 179/469 (38%), Positives = 275/469 (58%), Gaps = 41/469 (8%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + +L+ VG + +W + L+F V + VPT FL ++ + E I L+Q + Sbjct: 9 LKQKLQQSVGQSNFKNWIEPLEFARVDDGVATFHVPTTFLGNYVSQHFGELI--LYQMSN 66 Query: 102 -----SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 R+Q + S A PS T +S + PI +I S + Sbjct: 67 LSPDVRRLQ-FRVAANSGARPSRPATVAS-----VEPIADSIVPS--------------A 106 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AI Sbjct: 107 PLDERFTFDSFVVGKPNELAHAAARRVAECGP-----VTFNPLFLYGGVGLGKTHLMHAI 161 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 A +P+L VVYL+AE FM+RF A+RD ++ K R++D+L++DD+QF+ GK Sbjct: 162 AWELKITRPDLNVVYLSAEQFMYRFVQALRDRKMMDFKSVFRSVDVLMVDDVQFIAGKDS 221 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQ+V +ADR P E+ +L+ RI+SRLQ G+ V L DYE+R I Sbjct: 222 TQEEFFHTFNALVDQNKQIVISADRAPGEIANLEERIKSRLQCGLVVDLHPTDYELRLGI 281 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAE 391 L++++ + + P L +++ VL +A ++T+ R L+GA +L +FA + +T E Sbjct: 282 LQSKVDRYRAQYPDLALSDGVLEFLAHRISTNVRVLEGAMTRLF---AFASLVRKPITLE 338 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + + L+ ++ E +K+ IE+IQR V+ HYNI +D++ +R R RPRQVAMYL K Sbjct: 339 LTQDCLADVLRASE-RKVSIEEIQRKVSDHYNIRLSDMIGPKRTRCYARPRQVAMYLCKQ 397 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MT RS PEIGRRFG RDHTT++H V++++++ D + +++ELL+R + Sbjct: 398 MTSRSLPEIGRRFGGRDHTTIMHGVKRIDELRIQDAQIAEDLELLRRTL 446 >gi|149912812|ref|ZP_01901346.1| chromosomal replication initiator protein DnaA [Roseobacter sp. AzwK-3b] gi|149813218|gb|EDM73044.1| chromosomal replication initiator protein DnaA [Roseobacter sp. AzwK-3b] Length = 473 Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 176/469 (37%), Positives = 277/469 (59%), Gaps = 24/469 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI---TKLFQEEHS 102 L +G + Y +W + L+ V + SVPT+FL ++ + + I F + Sbjct: 13 LLKSIGKNNYTNWIEPLELADVNEGVATFSVPTSFLGNYVSQNFGDLILYKMNTFAPDIR 72 Query: 103 RIQGVEILVRSVALPSVEKTASS-PSITKLSPINTNISKSPIILGK---QTISPVF--GS 156 R+Q + S A P++ A + P + + + ++S + Q+ S + + Sbjct: 73 RVQ-FRVAANSAARPAMASPAGARPDVDGAADAPASAARSGVTTDAGQPQSASDIRLNTA 131 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AI Sbjct: 132 PLDERFTFDSFVVGKPNELAHAAARRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAI 186 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 A +R P L V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Sbjct: 187 AWELKQRSPELTVLYLSAEQFMYRFVQALRDRKMMDFKELFRSVDVLMVDDVQFIAGKES 246 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQ+V + DR P E+ +L+ RI+SRLQ G+ V L DYE+R I Sbjct: 247 TQEEFFHTFNALVDQNKQIVISGDRAPGEIANLEDRIKSRLQCGLVVDLHPTDYELRLGI 306 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+++ ++ P L ++ VL +A ++T+ R L+GA +L +FA ++ EI E Sbjct: 307 LQSKSEHYARQYPDLKLSNGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGHEITLE 363 Query: 396 L----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 L L+ ++ E +K+ +E+IQR VA HYNI ++++ +R+R RPRQVAMYL K Sbjct: 364 LTQDCLADILRASE-RKVSVEEIQRQVADHYNIRLSEMIGPKRLRAFARPRQVAMYLCKQ 422 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MT RS PEIGRRFG RDHTTV+H V+++E++ D + +++E+L+R + Sbjct: 423 MTSRSLPEIGRRFGGRDHTTVMHGVKRIEELQMQDAQIAEDLEILRRTL 471 >gi|126738627|ref|ZP_01754332.1| chromosomal replication initiation protein [Roseobacter sp. SK209-2-6] gi|126720426|gb|EBA17132.1| chromosomal replication initiation protein [Roseobacter sp. SK209-2-6] Length = 489 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 176/493 (35%), Positives = 282/493 (57%), Gaps = 38/493 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E + + +RL VG + + +W + L+F SV + VPTNF+ ++ + + I Sbjct: 2 TEEKWGQLRTRLLKTVGQNNFTTWIEPLEFSSVDDGVALFHVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQ--GVEILVRSVALPSVEKTASSPSITKLSPIN-----TNISKSP----- 142 F +Q ++ S A P+ E + +L+ T S++ Sbjct: 62 HEFNLSGEPVQRLAFKVAANSPARPAREADQPAEPYAELTTAGHATGGTTDSRTDWAEAP 121 Query: 143 ------------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + +S + +PLD RF F +F+ G N +A AA+ +AE Sbjct: 122 SKSSASGSSLSAQASARDPLSSLQAAPLDPRFTFDSFVVGKPNELAHAAARRVAEGGP-- 179 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 V NPL ++ VGLGKTHL+ AIA ++ P+L V+YL+AE FM+RF A+R+ Sbjct: 180 ---VTFNPLVLYGGVGLGKTHLMHAIAWELTEKNPHLNVLYLSAEQFMYRFVQALRERKM 236 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 ++ K R++D+L++DD+QF+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ Sbjct: 237 MDFKHLFRSVDVLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLE 296 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R++SRLQ G+ V L DYE+R IL+ ++ + Q P L I + VL +A ++T+ R Sbjct: 297 DRVKSRLQCGLVVDLHPTDYELRLGILQTKVQMQQATYPDLQIADGVLEFLAHRISTNVR 356 Query: 370 ELDGAFNQLVFRHSFAPILTAEIADEL----LSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 L+GA +L +FA ++ EI +L L+ ++ E +K+ +E+IQR V+++YNI Sbjct: 357 VLEGALTRLF---AFASLVGREIDMDLTQDCLADVLRASE-RKITVEEIQRKVSEYYNIR 412 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 +D++ +R+R+ RPRQVAMYL K +T RS PEIGRRFG RDHTTV+H VR++E++ T Sbjct: 413 MSDIIGPKRLRSYARPRQVAMYLCKQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKST 472 Query: 486 DITLKKEVELLKR 498 D + ++VE+L+R Sbjct: 473 DGQIAEDVEMLRR 485 >gi|84501260|ref|ZP_00999465.1| chromosomal replication initiation protein [Oceanicola batsensis HTCC2597] gi|84390551|gb|EAQ03039.1| chromosomal replication initiation protein [Oceanicola batsensis HTCC2597] Length = 470 Score = 310 bits (795), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 173/469 (36%), Positives = 267/469 (56%), Gaps = 13/469 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V +L VG Y +W + L + + P ++ ++ + + I Sbjct: 6 WGAVKQKLLQNVGQHNYKNWIEPLVLDRTEDGVAVIGAPNSWAGTYVARNFGDLILGEVS 65 Query: 99 EEHSRIQGVEILVRSVA---LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF- 154 + ++ +E +VR A P + A +P S++P K + Sbjct: 66 MMNRDVRRLEFVVRKAANVNAPEPARPAQMEVEPAEAPAPAAASQTPAQPAKASPMDTML 125 Query: 155 -GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 +PLD RF F F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 126 QAAPLDPRFTFDRFVVGKPNELAHAAARRVAEAGP-----VTFNPLFLYGGVGLGKTHLM 180 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AIA +P+L VVYL+AE FM+RF AIR+ ++ K R +D+L++DD+QF+ G Sbjct: 181 HAIAWELQTHRPDLTVVYLSAEQFMYRFVQAIRERRTMDFKSLFRTVDVLMVDDVQFIAG 240 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D KQ++ + DR P E+ ++ RIRSR+Q G+ V L DYE+R Sbjct: 241 KDSTQEEFFHTFNALVDQNKQIIISGDRAPGEMTDMEERIRSRMQCGLIVDLHPTDYELR 300 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAE 391 IL++++ + + P L + + VL +A ++T+ R L+GA +L F +T + Sbjct: 301 LGILQSKVDAQRAQYPDLKLADGVLEFLAHRISTNVRVLEGALTRLFAFSSLVGREITLD 360 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E LS ++ E +K+ +E+IQR VA+HYNI +DL+ +RVRT RPRQVAMYLSK Sbjct: 361 LTQECLSDILRASE-RKITVEEIQRKVAEHYNIRMSDLIGPKRVRTYARPRQVAMYLSKS 419 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T RS PEIGRRFG RDHTTV+H VR++E++ + D + +++ELL+R + Sbjct: 420 LTSRSLPEIGRRFGGRDHTTVIHGVRRIEELKQQDGQIAEDIELLRRAL 468 >gi|254463654|ref|ZP_05077065.1| chromosomal replication initiator protein DnaA [Rhodobacterales bacterium Y4I] gi|206684562|gb|EDZ45044.1| chromosomal replication initiator protein DnaA [Rhodobacterales bacterium Y4I] Length = 470 Score = 310 bits (793), Expect = 5e-82, Method: Compositional matrix adjust. Identities = 170/471 (36%), Positives = 277/471 (58%), Gaps = 17/471 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E + + +RL VG + + +W + L+F +V + VPTNF+ ++ + + I Sbjct: 6 TEEKWGQLRNRLLKTVGQNNFTTWIEPLEFDTVDGGVAVFKVPTNFMGNYVSQNFADLIL 65 Query: 95 KLFQEEHSRIQ--GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +Q + S A P+ E ++ S ++ G+ T+ Sbjct: 66 HELTMSGEPVQRLAFRVAANSPARPA-EPAVAAGSYGGAQDDLAVMTAPAAAAGRDTLEA 124 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + +PLD RF F +F+ G N +A AA+ + E V NPL ++ VGLGKTHL Sbjct: 125 LQAAPLDPRFTFDSFVVGKPNELAHAAARRVGEGGP-----VTFNPLVLYGGVGLGKTHL 179 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AIA ++ P+L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ Sbjct: 180 MHAIAWELKEKNPHLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIA 239 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+ Sbjct: 240 GKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYEL 299 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R IL+ ++ ++ P L I + VL +A ++T+ R L+GA +L +FA ++ E Sbjct: 300 RLGILQTKVQQQRETYPDLRIADGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGRE 356 Query: 392 IADEL----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 I +L L+ ++ E +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMY Sbjct: 357 IDMDLTQDCLADVLRASE-RKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVAMY 415 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 L K +T RS PEIGRRFG RDHTTV+H V+++E++ TD + ++VE+L+R Sbjct: 416 LCKQLTSRSLPEIGRRFGGRDHTTVMHGVKRIEELKLTDGQIAEDVEMLRR 466 >gi|163797310|ref|ZP_02191263.1| ATPase [alpha proteobacterium BAL199] gi|159177401|gb|EDP61957.1| ATPase [alpha proteobacterium BAL199] Length = 473 Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 175/470 (37%), Positives = 284/470 (60%), Gaps = 26/470 (5%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V RL+++ G VY SW + L + V LSVP+ F++ + +Y + + L+ E Sbjct: 17 VRGRLRSECGETVYRSWLRSLTLVRCDGSTVVLSVPSRFVRDRVMTQYGDRLRALWAIED 76 Query: 102 SRIQGVEILVR---SVALPSVEKTASSPSIT-----KLSPINTNISKSPIILGKQTISPV 153 +Q VE+ V +V +P+ AS+ + +L P+ + +P + + Sbjct: 77 PAVQSVEVTVAQSAAVEVPAGRAMASATAGAGETSDQLEPLELS---TPAVFRSNDPTDA 133 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 +PLD RF F+ F+ G N +A AA+ +A+ + TV NPLF++ VGLGKTHL+ Sbjct: 134 LSAPLDPRFTFANFVVGKPNELAFAAARRVADSE-----TVPFNPLFLYGGVGLGKTHLM 188 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AIA ++ P R++Y++AE FM++F A+R + KD R++D+L+IDD+QF+ G Sbjct: 189 HAIAWNLREKHPQRRMLYMSAEKFMYQFIRALRFKDTVAFKDLFRSVDVLMIDDVQFISG 248 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D +QV+ +AD+ P++L+ L+ R+RSRL G+ + YE+R Sbjct: 249 KDSTQEEFFHTFNALVDRNRQVIISADKSPNDLDGLEERLRSRLGWGLVADIHPTTYELR 308 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTA 390 IL+ S+ E +++I +VL +A +T++ REL+GA N++V + PI T Sbjct: 309 LGILQ-----SKAERLEVSIPSKVLEFLAHKITSNVRELEGALNRIVAHTTLVGRPI-TI 362 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E E L L+ + + +++ IE+IQR VA H+N+ D+ S RR R++ RPRQ+AMYL+K Sbjct: 363 ESTQEGLHDLLKSHD-RRVTIEEIQRKVASHFNLRITDMHSARRSRSIARPRQIAMYLAK 421 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T RS PEIGR+FG RDHTTV+HAV+KV+++ D ++V++L+R++ Sbjct: 422 QLTHRSLPEIGRKFGGRDHTTVMHAVKKVDELRAADRHFDEDVDMLRRML 471 >gi|157825988|ref|YP_001493708.1| chromosomal replication initiation protein [Rickettsia akari str. Hartford] gi|166214696|sp|A8GP75|DNAA_RICAH RecName: Full=Chromosomal replication initiator protein DnaA gi|157799946|gb|ABV75200.1| chromosomal replication initiation protein [Rickettsia akari str. Hartford] Length = 463 Score = 308 bits (788), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 173/469 (36%), Positives = 288/469 (61%), Gaps = 23/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNLWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ ++I+ + LP +T + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIDIITKE--LPGTTQTVIELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ + K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL++++ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILESKI-----EQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T +S +IG++FG +DHTTV++A++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTLKSLADIGKKFGKKDHTTVMYAIKKVEELLENDIELREEINLLMKIL 461 >gi|163743748|ref|ZP_02151122.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis 2.10] gi|161383009|gb|EDQ07404.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis 2.10] Length = 475 Score = 306 bits (785), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 174/469 (37%), Positives = 274/469 (58%), Gaps = 24/469 (5%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 RL VG + + +W + L+F V + + +VPTNF+ ++ + + I + Sbjct: 12 RLLKTVGQNNFTTWIEPLEFTCVENGVAIFNVPTNFMGNYVSQNFADLILHELNMSGEPV 71 Query: 105 Q--GVEILVRSVALPSVEKTASSPSITKLSPIN---TNISKSPIILG-----KQTISPVF 154 Q + + A P+ A + L + T++ ++ G K + Sbjct: 72 QRLAFRVAANTAARPTAVDAAGAADDLPLDLDDEALTDLPRARTATGHAAAPKDQGETLQ 131 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 +PLD RF F +F+ G N +A AA+ +AE V NPL ++ VGLGKTHL+ Sbjct: 132 AAPLDPRFTFDSFVVGKPNELAHAAARRVAEGGP-----VTFNPLVLYGGVGLGKTHLMH 186 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA R P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ GK Sbjct: 187 AIAWELTARNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGK 246 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ++ +ADR P E++ L+ R+RSRLQ G+ V L DYE+R Sbjct: 247 DSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRL 306 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA 393 IL++++A + P L I + VL +A ++T+ R L+GA +L +FA ++ EI Sbjct: 307 GILQSKVAQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGREID 363 Query: 394 DEL----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 EL L+ ++ E +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMYL Sbjct: 364 MELTQDCLADVLRASE-RKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVAMYLC 422 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 K +T RS PEIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R Sbjct: 423 KQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRR 471 >gi|254476159|ref|ZP_05089545.1| chromosomal replication initiator protein DnaA [Ruegeria sp. R11] gi|214030402|gb|EEB71237.1| chromosomal replication initiator protein DnaA [Ruegeria sp. R11] Length = 459 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 172/463 (37%), Positives = 270/463 (58%), Gaps = 21/463 (4%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 VG + + +W + L+F V + +VPTNF+ ++ + + I F +Q + Sbjct: 4 VGQNNFTTWIEPLEFTRVDDGVAFFNVPTNFMGNYVSQNFADLILHEFNLSGEPVQRLAF 63 Query: 110 LVRSVALPSVEKTASSPSITKLSPINT-------NISKSPIILGKQTISPVFGSPLDSRF 162 V + S + +P++ S +P K + +PLD RF Sbjct: 64 KVAANEAARPAARRSDVADVVETPMDAADDMAPRARSAAPSAAAKDLADTLQAAPLDPRF 123 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F +F+ G N +A AA+ +AE V NPL ++ VGLGKTHL+ AIA Sbjct: 124 TFDSFVVGKPNELAHAAARRVAE-----GGPVTFNPLVLYGGVGLGKTHLMHAIAWELKD 178 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 R P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ GK Q EF Sbjct: 179 RNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEEFF 238 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L+D KQ++ +ADR P E++ L+ R+RSRLQ G+ V L DYE+R IL++++A Sbjct: 239 HTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRLGILQSKVA 298 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL----L 397 + P L I + VL +A ++T+ R L+GA +L +FA ++ EI EL L Sbjct: 299 QQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGREIDMELTQDCL 355 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + ++ E +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMYL K +T RS Sbjct: 356 ADVLRASE-RKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVAMYLCKQLTSRSL 414 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PEIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R + Sbjct: 415 PEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRRAL 457 >gi|163738134|ref|ZP_02145550.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis BS107] gi|161388750|gb|EDQ13103.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis BS107] Length = 475 Score = 306 bits (785), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 174/469 (37%), Positives = 274/469 (58%), Gaps = 24/469 (5%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 RL VG + + +W + L+F V + + +VPTNF+ ++ + + I + Sbjct: 12 RLLKTVGQNNFTTWIEPLEFTCVENGVAIFNVPTNFMGNYVSQNFADLILHELNMSGEPV 71 Query: 105 Q--GVEILVRSVALPSVEKTASSPSITKLSPIN---TNISKSPIILG-----KQTISPVF 154 Q + + A P+ A + L + T++ ++ G K + Sbjct: 72 QRLAFRVAANTAARPTAVDAAGAADDLPLDLDDEALTDLPRARTATGHGAAPKDQGETLQ 131 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 +PLD RF F +F+ G N +A AA+ +AE V NPL ++ VGLGKTHL+ Sbjct: 132 AAPLDPRFTFDSFVVGKPNELAHAAARRVAEGGP-----VTFNPLVLYGGVGLGKTHLMH 186 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA R P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ GK Sbjct: 187 AIAWELTARNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGK 246 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ++ +ADR P E++ L+ R+RSRLQ G+ V L DYE+R Sbjct: 247 DSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRL 306 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA 393 IL++++A + P L I + VL +A ++T+ R L+GA +L +FA ++ EI Sbjct: 307 GILQSKVAQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGREID 363 Query: 394 DEL----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 EL L+ ++ E +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMYL Sbjct: 364 MELTQDCLADVLRASE-RKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVAMYLC 422 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 K +T RS PEIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R Sbjct: 423 KQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRR 471 >gi|73666899|ref|YP_302915.1| chromosomal replication initiation protein [Ehrlichia canis str. Jake] gi|72394040|gb|AAZ68317.1| chromosomal replication initiator protein DnaA [Ehrlichia canis str. Jake] Length = 452 Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 175/481 (36%), Positives = 274/481 (56%), Gaps = 39/481 (8%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 K L+ + I+ + S+L G +Y SW L + + V LS PT F+K WI Sbjct: 2 KEGLQSDNRVIWKDIQSKLHKFYGNAIYDSWLSVLVYVNNEGGKVLLSAPTRFIKEWILV 61 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 YL+ I K +Q+E + V+I V +N + + + Sbjct: 62 HYLDQILKYWQDEDKSVCSVDICV----------------------VNNQDTNLIVNVKD 99 Query: 148 QTISPV------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 Q + + SPLD RF F F+ G N +A AA+ +AE + + NPLF+ Sbjct: 100 QQGNEIRNNYDHLSSPLDPRFTFDNFVVGKPNELAFAAARRVAESNDPISGS---NPLFL 156 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ AIA IK ++ YL+AE FM+++ +A+R + K+ R++D Sbjct: 157 YGGVGLGKTHLMHAIAWYIIKSSSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVD 216 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ Sbjct: 217 ILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGL 276 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + +E+R IL+ ++ E +NI +VL +A+ + ++ REL+GA N++V Sbjct: 277 VADINETTFELRLGILQLKV-----EKMGINIPNKVLEFLAKNIKSNIRELEGALNKVVA 331 Query: 381 RHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 S +T + A ++LS L+ K + +E IQ+ VA+ +NI D+ S RR+RT+ Sbjct: 332 HSSLVGCSITLDSASDILSDLLRANH-KSVTLECIQKKVAEFFNIKMTDMYSTRRLRTLA 390 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQVAMYLSK +T +S PEIG+ FG RDH TV+HAV+++EK++ETD L+ ++ LL R+ Sbjct: 391 RPRQVAMYLSKKLTQKSLPEIGKSFGGRDHATVIHAVKQIEKLIETDDKLRDDINLLTRM 450 Query: 500 I 500 + Sbjct: 451 L 451 >gi|190570479|ref|YP_001974837.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356751|emb|CAQ54110.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 460 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 173/463 (37%), Positives = 270/463 (58%), Gaps = 36/463 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + + L N G Y SW L+F S + V LSVPT F+K WI Y+E I L+Q E Sbjct: 29 IQNYLHNLYGEATYNSWLSSLRFISNRNGEVLLSVPTRFIKEWITVHYMEKILSLWQSED 88 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 + ++I + E+ ++S +I K ++ + GSPLD+R Sbjct: 89 QSVCSIDIQLIE------ERNSNSNTILK---------------NREENNHNLGSPLDTR 127 Query: 162 FVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 F F F+ G SN +A TAA+ +AE +D + NPLF++ VGLGKTHL+ AIA Sbjct: 128 FTFDNFVVGKSNELAFTAAKRVAESIDPISGS----NPLFLYGGVGLGKTHLMHAIA-WD 182 Query: 221 IKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 I P+ + VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Q Sbjct: 183 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 242 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 243 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 302 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELL 397 ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E L Sbjct: 303 AKV-----ERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSMTVESASETL 357 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 L+ + + + IE+IQ+ +A+ +NI D+ SNRR+R++ RPRQ+AMY +K T +S Sbjct: 358 IDLLRSNH-RSITIEEIQKKIAEFFNIKIADMQSNRRLRSLARPRQIAMYFAKKFTQKSL 416 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+IGR FG RDH TV+HAV++VE + TD E+ LK++ Sbjct: 417 PDIGRNFGGRDHATVIHAVKQVENFIRTDPKFADEINRLKKMF 459 >gi|68171134|ref|ZP_00544543.1| chromosomal replication initiator protein, DnaA [Ehrlichia chaffeensis str. Sapulpa] gi|88658026|ref|YP_507606.1| chromosomal replication initiation protein [Ehrlichia chaffeensis str. Arkansas] gi|123722775|sp|Q2GG27|DNAA_EHRCR RecName: Full=Chromosomal replication initiator protein DnaA gi|67999459|gb|EAM86099.1| chromosomal replication initiator protein, DnaA [Ehrlichia chaffeensis str. Sapulpa] gi|88599483|gb|ABD44952.1| chromosomal replication initiator protein DnaA [Ehrlichia chaffeensis str. Arkansas] Length = 464 Score = 303 bits (777), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 176/484 (36%), Positives = 274/484 (56%), Gaps = 39/484 (8%) Query: 25 DVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAW 84 D K L+ + + I+ + +L G +Y SW L + + V LS PT F+K W Sbjct: 11 DCVKEKLQSDNQVIWKDIQVKLHKFYGNAIYDSWLSVLVYINNEGGKVLLSAPTRFIKEW 70 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 I YL+ I K +Q+E + V+I V +N + + Sbjct: 71 ILVHYLDQILKYWQDEDQSVCSVDICV----------------------VNNQDTNLLVN 108 Query: 145 LGKQTISPV------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + Q V SPLD RF F F+ G N +A AA+ +AE + + NP Sbjct: 109 IKDQQDKEVRNNYDHLSSPLDPRFTFDNFVVGKPNELAFAAARRVAESNEPISGS---NP 165 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LF++ VGLGKTHL+ AIA IK ++ YL+AE FM+++ +A+R + K+ R Sbjct: 166 LFLYGGVGLGKTHLMHAIAWYIIKSSSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFR 225 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL Sbjct: 226 SVDILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLG 285 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ + +E+R IL+ ++ E +NI +VL +A+ + ++ REL+GA N+ Sbjct: 286 WGLVADINETTFELRLGILQLKV-----EKMGINIPNKVLEFLAKNIKSNIRELEGALNK 340 Query: 378 LVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 +V S +T + A ++LS L+ K + +E IQR VA+ +NI D+ S RR+R Sbjct: 341 VVAHSSLVGCSITLDSASDILSDLLRANH-KSVTLECIQRKVAEFFNIKITDMYSTRRLR 399 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 T+ RPRQVAMYLSK +T +S PEIG+ FG RDH TV+HAV+++EK+++TD L+ ++ LL Sbjct: 400 TLARPRQVAMYLSKKLTQKSLPEIGKSFGGRDHATVIHAVKQIEKLIDTDSKLRDDINLL 459 Query: 497 KRLI 500 R++ Sbjct: 460 TRML 463 >gi|213019238|ref|ZP_03335045.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995347|gb|EEB55988.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 473 Score = 303 bits (776), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 173/463 (37%), Positives = 270/463 (58%), Gaps = 36/463 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + + L N G Y SW L+F S + V LSVPT F+K WI Y+E I L+Q E Sbjct: 42 IQNYLHNLYGEATYNSWLSSLRFISNRNGEVLLSVPTRFIKEWITVHYMEKILSLWQSED 101 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 + ++I + E+ ++S +I K ++ + GSPLD+R Sbjct: 102 QSVCSIDIQLIE------ERNSNSNTILK---------------NREENNHNLGSPLDTR 140 Query: 162 FVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 F F F+ G SN +A TAA+ +AE +D + NPLF++ VGLGKTHL+ AIA Sbjct: 141 FTFDNFVVGKSNELAFTAAKRVAESIDPISGS----NPLFLYGGVGLGKTHLMHAIA-WD 195 Query: 221 IKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 I P+ + VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Q Sbjct: 196 IVNSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 255 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 256 EEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQ 315 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELL 397 ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E L Sbjct: 316 AKV-----ERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSMTVESASETL 370 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 L+ + + + IE+IQ+ +A+ +NI D+ SNRR+R++ RPRQ+AMY +K T +S Sbjct: 371 IDLLRSNH-RSITIEEIQKKIAEFFNIKIADMQSNRRLRSLARPRQIAMYFAKKFTQKSL 429 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+IGR FG RDH TV+HAV++VE + TD E+ LK++ Sbjct: 430 PDIGRNFGGRDHATVIHAVKQVENFIRTDPKFADEINRLKKMF 472 >gi|254451709|ref|ZP_05065146.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 238] gi|198266115|gb|EDY90385.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 238] Length = 454 Score = 302 bits (773), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 269/461 (58%), Gaps = 27/461 (5%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V + +++ +G + +W + L S + +L+ P F+ ++ Y + I + Sbjct: 17 VKTDMRSAIGVGNFKNWIEPLSLVSTSEGVAYLAAPNPFVGDYVGKTYGDQIIYHLNRQG 76 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 +Q + + A +V A+ P + K P NT + P D R Sbjct: 77 LAVQRLAFEIEGKANTAVND-AAKPVVRK--PTNTLVDAQP----------------DQR 117 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F +F+ G N +A A++ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 118 FTFDSFVVGKPNELAHAASKRVAE-----GGPVTFNPLFLYGGVGLGKTHLMHAIAHELG 172 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 +R+P+L V+Y++A+ F++RF SA+RD ++ K R++D+L++DD+QFL+GK Q EF Sbjct: 173 ERRPDLNVLYVSADQFIYRFISALRDRKMMDFKQHFRSVDVLMVDDIQFLEGKESTQEEF 232 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L D KQ++ +ADR P E+ L RI+SRLQ G+ V L DYE+R IL + Sbjct: 233 FHTYNALADQGKQMIISADRAPGEIRDLSERIKSRLQCGLVVDLHPTDYELRLGILHAKQ 292 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSH 399 + P + I VL +A ++++ R L+GA N+L S +T E+A + LS Sbjct: 293 EMFVNVYPGVEIATGVLEFLAHRISSNVRVLEGALNRLYALASMVGRTVTVEMAQDCLSD 352 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 ++ + +K+ IE+IQR V++H++I +D+L ++R RT+ RPRQVAM+L K +T RS PE Sbjct: 353 ILRASD-RKLTIEEIQRKVSEHFDIRLSDMLGSKRTRTLARPRQVAMWLCKRLTSRSLPE 411 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IGR+FG RDHTT++H VRK++++ ++D + ++ELL+R + Sbjct: 412 IGRKFGKRDHTTIMHGVRKIDELRQSDSQIADDLELLRRAL 452 >gi|42519921|ref|NP_965836.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|225629873|ref|YP_002726664.1| chromosomal replication initiator protein DnaA [Wolbachia sp. wRi] gi|61212648|sp|Q73IZ0|DNAA_WOLPM RecName: Full=Chromosomal replication initiator protein DnaA gi|42409658|gb|AAS13770.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila melanogaster] gi|67810247|gb|AAY81988.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|225591854|gb|ACN94873.1| chromosomal replication initiator protein DnaA [Wolbachia sp. wRi] Length = 460 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 176/462 (38%), Positives = 269/462 (58%), Gaps = 42/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L N G Y SW LKF S + V LSV T F+K WI Y++ I L+Q E I+ Sbjct: 33 LYNLYGEATYNSWLSSLKFVSSRNGEVLLSVSTRFIKEWITVHYMKKILSLWQSEDKSIR 92 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++I V +E+ S N N+ I+ ++ + GSPLD RF F Sbjct: 93 SIDIQV-------IEERNS----------NFNV----ILKNREESNHNLGSPLDPRFTFD 131 Query: 166 TFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA-----NA 219 F+ G N +A TAA+ +AE +D + NPLF++ VGLGKTHL+ AIA + Sbjct: 132 NFVVGKPNELAFTAAKRVAESIDP----ILGSNPLFLYGGVGLGKTHLMHAIAWHIVNSP 187 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 S KR +VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Q Sbjct: 188 SAKR----KVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQE 243 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 244 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 303 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E L Sbjct: 304 KV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASETLI 358 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T +S P Sbjct: 359 DLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQKSLP 417 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IGR FG RDH TV+HAV++VE ++TD E+ LK++ Sbjct: 418 DIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEINRLKKMF 459 >gi|58698404|ref|ZP_00373316.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila ananassae] gi|58535086|gb|EAL59173.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila ananassae] Length = 464 Score = 301 bits (772), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 176/462 (38%), Positives = 269/462 (58%), Gaps = 42/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L N G Y SW LKF S + V LSV T F+K WI Y++ I L+Q E I+ Sbjct: 37 LYNLYGEATYNSWLSSLKFVSSRNGEVLLSVSTRFIKEWITVHYMKKILSLWQSEDKSIR 96 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++I V +E+ S N N+ I+ ++ + GSPLD RF F Sbjct: 97 SIDIQV-------IEERNS----------NFNV----ILKNREESNHNLGSPLDPRFTFD 135 Query: 166 TFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA-----NA 219 F+ G N +A TAA+ +AE +D + NPLF++ VGLGKTHL+ AIA + Sbjct: 136 NFVVGKPNELAFTAAKRVAESIDP----ILGSNPLFLYGGVGLGKTHLMHAIAWHIVNSP 191 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 S KR +VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Q Sbjct: 192 SAKR----KVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQE 247 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 248 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 307 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E L Sbjct: 308 KV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASETLI 362 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T +S P Sbjct: 363 DLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQKSLP 421 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IGR FG RDH TV+HAV++VE ++TD E+ LK++ Sbjct: 422 DIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEINRLKKMF 463 >gi|209966320|ref|YP_002299235.1| chromosomal replication initiation protein [Rhodospirillum centenum SW] gi|209959786|gb|ACJ00423.1| chromosomal replication initiator protein DnaA [Rhodospirillum centenum SW] Length = 507 Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 185/503 (36%), Positives = 276/503 (54%), Gaps = 56/503 (11%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V RLK++VG Y SW + L V + VPT F++ WI+ Y + I L+ E+ Sbjct: 15 VRGRLKDEVGETAYRSWLKPLTVGDFDGGQVRIMVPTRFMRDWIRTHYADRIRALWSGEN 74 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI------------------ 143 +Q VEI+V + + S + S I +++P Sbjct: 75 PGVQSVEIVVATSQKSETRASEPPASEIRASEIRAPETRAPASGPAPARSRARAVAEPAL 134 Query: 144 -----------------------ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 +G +PLD RF F F+ G N +A AA Sbjct: 135 DGAAAAVAPSAPAYAEAEPAPVAAVGGAEEREDLSAPLDPRFTFENFVVGKPNELAFAAA 194 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 + +A+ + V NPLF++ VGLGKTHL+ AIA ++ P+ RV+YL+AE FM++ Sbjct: 195 RRVADA-----SAVTFNPLFLYGGVGLGKTHLMHAIAWHIRRKDPSRRVIYLSAEKFMYQ 249 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 F A+R + K+ R++D+L+IDD+QF+ GK Q EF H N+L+D +QV+ +AD Sbjct: 250 FIRALRFKDTMAFKEQFRSVDVLMIDDVQFISGKDSTQEEFFHTFNALVDQNRQVIISAD 309 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP-KLNINEEVLM 358 + PS+LE ++ R+RSRL G+ + YE+R IL+ QK D I ++VL Sbjct: 310 KSPSDLEGMEERLRSRLGWGLVADIHPTTYELRLGILQ------QKADQMGAKIPQKVLE 363 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A +T++ REL+GA N++V +T E E+L L+ +++ IE+IQ+ Sbjct: 364 FLAHKITSNVRELEGALNRIVAHAELVGRAITLESTQEVLHDLLRAS-NRRVTIEEIQKK 422 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA+H+NI +D+ S RR R V RPRQVAMYL+K +T RS PEIGR+FGDRDHTTV+HAVR Sbjct: 423 VAEHFNIRLSDMSSARRARAVARPRQVAMYLAKQLTQRSLPEIGRKFGDRDHTTVMHAVR 482 Query: 478 KVEKMLETDITLKKEVELLKRLI 500 KVE++ TD ++VELL+R++ Sbjct: 483 KVEELCGTDPAFAEDVELLRRML 505 >gi|225677165|ref|ZP_03788163.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590789|gb|EEH12018.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 460 Score = 301 bits (770), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 176/460 (38%), Positives = 268/460 (58%), Gaps = 42/460 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L N G Y SW LKF S + V LSV T F+K WI Y++ I L+Q E I+ Sbjct: 33 LYNLYGEATYNSWLSSLKFVSSRNGEVLLSVSTRFIKEWITVHYMKKILSLWQSEDKSIR 92 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++I V +E+ S N N+ I+ ++ + GSPLD RF F Sbjct: 93 SIDIQV-------IEERNS----------NFNV----ILKNREESNHNLGSPLDPRFTFD 131 Query: 166 TFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA-----NA 219 F+ G N +A TAA+ +AE +D + NPLF++ VGLGKTHL+ AIA + Sbjct: 132 NFVVGKPNELAFTAAKRVAESIDP----ILGSNPLFLYGGVGLGKTHLMHAIAWHIVNSP 187 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 S KR +VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Q Sbjct: 188 SAKR----KVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQE 243 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 244 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 303 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E L Sbjct: 304 KV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASETLI 358 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T +S P Sbjct: 359 DLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQKSLP 417 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +IGR FG RDH TV+HAV++VE ++TD E+ LK+ Sbjct: 418 DIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEINRLKK 457 >gi|254437134|ref|ZP_05050628.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] gi|198252580|gb|EDY76894.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] Length = 446 Score = 300 bits (769), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 165/461 (35%), Positives = 266/461 (57%), Gaps = 27/461 (5%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V + ++ +G + SW + L + + HL+ P F+ ++ Y + I + Sbjct: 9 VKTDMRAAIGAGNFKSWIEPLSLVTTSEGVAHLAAPNPFVGDYVGKTYGDQIIYHLNRQG 68 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 +Q + + A + ++ P+ K P NT P + R Sbjct: 69 LAVQRLAFEIEGKA-NTATNVSAKPAAQK--PANTLADAQP----------------NQR 109 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 110 FNFDSFVVGKPNELAHAAAKRVAEGGP-----VTFNPLFLYGGVGLGKTHLMHAIAHELG 164 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 R+P+L V+Y++A+ F++RF SA+RD ++ K R++D+L++DD+QFL+GK Q EF Sbjct: 165 LRRPDLNVLYVSADQFIYRFISALRDRKMMDFKQHFRSVDVLMVDDIQFLEGKESTQEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L D KQ++ +ADR P E+ L RI+SRLQ G+ V L DYE+R IL ++ Sbjct: 225 FHTYNALADQGKQMIISADRAPGEIRDLSERIKSRLQCGLVVDLHPTDYELRLGILHSKQ 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSH 399 + P + I VL +A ++++ R L+GA N+L S ++T E+A + LS Sbjct: 285 EMFVNVYPGVEIATGVLEFLAHRISSNVRVLEGALNRLYALASLVGRVVTVEMAQDCLSD 344 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 ++ + +K+ IE+IQR V++HY+I +D+L +R RT+ RPRQVAM+L K +T RS PE Sbjct: 345 ILRASD-RKLTIEEIQRKVSEHYDIRLSDMLGPKRTRTLARPRQVAMWLCKRLTSRSLPE 403 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IGR+FG RDHTT++H VRK++++ ++D + ++ELL+R + Sbjct: 404 IGRKFGKRDHTTIMHGVRKIDELRQSDSQISDDLELLRRAL 444 >gi|58038492|ref|YP_190456.1| chromosomal replication initiation protein [Gluconobacter oxydans 621H] gi|71151799|sp|Q5FUU1|DNAA_GLUOX RecName: Full=Chromosomal replication initiator protein DnaA gi|58000906|gb|AAW59800.1| Chromosomal replication initiator protein DnaA [Gluconobacter oxydans 621H] Length = 479 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 178/472 (37%), Positives = 281/472 (59%), Gaps = 28/472 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + V +LK++VG Y +W +++ + + + L +PT FL+ W++++Y E + Sbjct: 27 ETAWIRVREKLKSEVGEVEYRTWLRQIVLGPLEEDELTLYLPTRFLRDWVRSQYEERLQT 86 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L++ E I+GVE+ V+ LP V + + S L Q +P Sbjct: 87 LWRTEREDIKGVELQVKR-GLPEVSMGDAED--------GEDGSGEGHELATQAAAPESR 137 Query: 156 S----PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 S PLD RF F TFI G N A A+ +AE S + NPLF++ VGLGKTH Sbjct: 138 SDLAVPLDPRFTFDTFIVGKPNEFAYACARRVAEKPS----SPGFNPLFLYGGVGLGKTH 193 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + R + V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL Sbjct: 194 LMHAIGT-ELTRTGKVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFL 252 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L+D+ +Q++ +AD+ PS+L L+ R+R+RL G+ + +E Sbjct: 253 IGKDNTQEEFFHTFNALVDAGRQIIVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFE 312 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PIL 388 +R SIL+ + S P +VL ++A +TT+ REL+GA N+L+ P+ Sbjct: 313 LRISILEAKAKASGTHVPS-----KVLEYLAHKITTNVRELEGALNRLIAHADLVGRPV- 366 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + ++L ++ + +++ IE+IQR V++H+NI D+ S RR R V RPRQVAMYL Sbjct: 367 TLDTTQDVLKDMLKAHD-RRVTIEEIQRKVSEHWNIRLTDMSSARRARAVARPRQVAMYL 425 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K +T RS PEIGR+FG+RDHTTV+HAV +V ++++ D + ++VELL+R++ Sbjct: 426 AKQLTSRSLPEIGRKFGNRDHTTVMHAVNRVTELMDQDTSFAEDVELLRRML 477 >gi|91205663|ref|YP_538018.1| chromosomal replication initiation protein [Rickettsia bellii RML369-C] gi|123084564|sp|Q1RI85|DNAA_RICBR RecName: Full=Chromosomal replication initiator protein DnaA gi|91069207|gb|ABE04929.1| Chromosomal replication initiator protein DnaA [Rickettsia bellii RML369-C] Length = 463 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 169/448 (37%), Positives = 273/448 (60%), Gaps = 23/448 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NSVNVWSNVTQDLYNYYGEALYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYSVVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ VEI+ + LP AS+ + +L P T L + I Sbjct: 74 LQLFQHYNNAIKTVEIITKE--LP-----ASNQATLEL-PTKTFADIGSSELNSENIFST 125 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F D RF F F+ G+ N +A A+++AE S NPLF++ VGLGKTHL+ Sbjct: 126 F----DIRFTFDNFVVGAPNELAYAVARAVAESSS---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVMSFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L+ ++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDDIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 IL++++ E + + ++V+ +A + ++ REL+GA N+++ +F A +T E Sbjct: 299 LGILESKI-----EQMNVKVPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTAKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S RR+RT+ RPRQ+AMYLSKI Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVANRYNIKLSDMSSPRRMRTIARPRQIAMYLSKI 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +TP+S +IG++FG +DHTTV+HA++KV Sbjct: 413 LTPKSLVDIGKKFGKKDHTTVMHAIKKV 440 >gi|56695074|ref|YP_165421.1| chromosomal replication initiation protein [Ruegeria pomeroyi DSS-3] gi|71151804|sp|Q5LWV4|DNAA_SILPO RecName: Full=Chromosomal replication initiator protein DnaA gi|56676811|gb|AAV93477.1| chromosomal replication initiator protein DnaA [Ruegeria pomeroyi DSS-3] Length = 468 Score = 300 bits (767), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 168/473 (35%), Positives = 281/473 (59%), Gaps = 23/473 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++ +L VG + + +W + L+F ++ + + +VPTNF+ ++ + + I Sbjct: 6 WGLLCQKLLKTVGQNNFTTWIEPLEFQALENGVAVFTVPTNFMGNYVSQNFSDLI---LY 62 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT------ISP 152 E ++ + V+ L VA S + A + + ++P + + + Sbjct: 63 ELNNAGEAVQRLAFRVAANSPMRPARAARPAAAAAAAAAAVEAPQVSAPRATDTSDVLDG 122 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + +PLD RF F +F+ G N +A AA+ ++E V NPL ++ VGLGKTHL Sbjct: 123 LQAAPLDPRFTFDSFVVGKPNELAHAAARRVSEGGP-----VTFNPLVLYGGVGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AIA ++P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ Sbjct: 178 MHAIAWELKVKRPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+ Sbjct: 238 GKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYEL 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R IL+ ++ + + P L I + VL +A ++T+ R L+GA +L +FA ++ E Sbjct: 298 RLGILQTKVQMYRTTYPDLVIADGVLEFLAHRISTNVRVLEGALTRLF---AFASLVGRE 354 Query: 392 IADEL----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 I EL L+ ++ E +K+ +E+IQR V+ +YNI +D++ +R+R+ RPRQVAMY Sbjct: 355 IDMELTQDCLADVLRASE-RKITVEEIQRKVSDYYNIRLSDIIGPKRLRSYARPRQVAMY 413 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L K +T RS PEIGRRFG RDHTTV+H V+++E++ TD + ++VE+L+R + Sbjct: 414 LCKQLTSRSLPEIGRRFGGRDHTTVMHGVKRIEELKLTDGQIAEDVEMLRRAL 466 >gi|46205665|ref|ZP_00048226.2| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 322 Score = 298 bits (764), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 152/309 (49%), Positives = 211/309 (68%), Gaps = 8/309 (2%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+PLD+R ++F SN +A AA+ +A D G NPL++HA VGLGKTHLL Sbjct: 20 GAPLDARLTVASFFVVRSNALAHAAAERVARSDGEGAL---YNPLYVHAGVGLGKTHLLH 76 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A +A+ R+ RV+YLTA+ FM+ F +A++ AL K+ LR IDLL++DD+QF+QGK Sbjct: 77 AAGHAA--REAGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDLLILDDVQFIQGK 134 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 IQ EF H LN+L+DS +QVV A+DRPP+ELE+LD R+RSRL GG+ V +G D +R S Sbjct: 135 SIQTEFGHTLNALIDSGRQVVVASDRPPTELEALDERVRSRLAGGLVVEIGGLDEGLRAS 194 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEI 392 IL RL + P ++ V +VAR +T +GR+L+GA N+L+ + AP+ T E Sbjct: 195 ILSARLEAVRHSHPNFEVSPAVSAYVARAITANGRDLEGAVNRLLAHATLTGAPV-TVET 253 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR VV+PRQ+AMYLSK++ Sbjct: 254 AETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERRTAAVVKPRQIAMYLSKVL 313 Query: 453 TPRSFPEIG 461 T RS PEIG Sbjct: 314 TLRSLPEIG 322 >gi|5702042|emb|CAB52256.1| dnaA protein [Wolbachia sp. wRi] Length = 454 Score = 298 bits (762), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 265/455 (58%), Gaps = 42/455 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L N G Y SW LKF S + V LSV T F+K WI Y++ I L+Q E I+ Sbjct: 33 LYNLYGEATYNSWLSSLKFVSSRNGEVLLSVSTRFIKEWITVHYMKKILSLWQSEDKSIR 92 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++I V +E+ S N N+ I+ ++ + GSPLD RF F Sbjct: 93 SIDIQV-------IEERNS----------NFNV----ILKNREESNHNLGSPLDPRFTFD 131 Query: 166 TFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA-----NA 219 F+ G N +A TAA+ +AE +D + NPLF++ VGLGKTHL+ AIA + Sbjct: 132 NFVVGKPNELAFTAAKRVAESIDP----ILGSNPLFLYGGVGLGKTHLMHAIAWHIVNSP 187 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 S KR +VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Q Sbjct: 188 SAKR----KVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQE 243 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 244 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 303 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E L Sbjct: 304 KV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASETLI 358 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T +S P Sbjct: 359 DLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQKSLP 417 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 +IGR FG RDH TV+HAV++VE ++TD E+ Sbjct: 418 DIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEI 452 >gi|114326825|ref|YP_743982.1| chromosomal replication initiation protein [Granulibacter bethesdensis CGDNIH1] gi|114314999|gb|ABI61059.1| chromosomal replication initiator protein dnaA [Granulibacter bethesdensis CGDNIH1] Length = 525 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 179/488 (36%), Positives = 292/488 (59%), Gaps = 42/488 (8%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V RL+ +VG Y +W +++ + + V + +PT FL+ W+++ Y + + L+Q E+ Sbjct: 49 VRQRLRAEVGEVEYRTWLRQMTLAGLEADEVAIHLPTRFLRDWVRSHYSDRLNTLWQAEN 108 Query: 102 SRIQGVEI-----------LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ++ V+I L S+ + + AS+P+ +++P+++ ++ + T+ Sbjct: 109 PAVRRVDIRLGSVTESGHGLTESLYESGIVQKASAPA-ERVAPVSS-VADQASLPEADTL 166 Query: 151 SPV-FGSP-------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVD-SHGYTTVR 195 +P P LD RF F TF+ G N A A+ +AE S G+ Sbjct: 167 APSSLAGPALDEAGRAGDMHALDRRFSFETFVVGKPNEFAYACARRVAESPASPGF---- 222 Query: 196 LNPLFIHASVGLGKTHLLQAIA-NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLF++ VGLGKTHL+ AIA + +P + V Y++AE FM+RF +AIR + K Sbjct: 223 -NPLFLYGGVGLGKTHLMHAIAWELNRPGRPPVSVAYMSAEKFMYRFIAAIRSQSTMEFK 281 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + LR++D+L++DD+QFL GK Q EF H N+L+D+ KQ+V +AD+ PS+L L+ R+R Sbjct: 282 EELRSVDVLMVDDLQFLIGKDNTQEEFFHTFNALVDAGKQIVVSADKSPSDLSGLEDRLR 341 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +RL G+ L +E+R SIL+ ++ + + ++ +VL +A +T++ REL+G Sbjct: 342 TRLGCGMVADLHATTFELRISILEAKV-----QKAGVEVSPKVLEFLAHKITSNVRELEG 396 Query: 374 AFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A N+L+ + F LT E A E+L H + +++ IE+IQR VA+H+NI D+ S Sbjct: 397 ALNRLIAHANLFGRALTLETAQEVL-HDILKAHDRRITIEEIQRRVAEHWNIRLTDMSSA 455 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR R V RPRQVAM+L+K +T RS PEIGR+FG+RDHTTV+HA+ +V +++E D ++ Sbjct: 456 RRARAVARPRQVAMFLAKQLTSRSLPEIGRKFGNRDHTTVMHAISRVTELMERDAAFAED 515 Query: 493 VELLKRLI 500 VELL+R++ Sbjct: 516 VELLRRML 523 >gi|71083115|ref|YP_265834.1| chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062228|gb|AAZ21231.1| Chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1062] Length = 444 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 171/466 (36%), Positives = 276/466 (59%), Gaps = 41/466 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI---TKLFQEEHS 102 +KN++G D+Y SW +++ F +++ V LSV T F++ WI +RYL+ I K ++++ + Sbjct: 1 MKNKLGSDIYESWLRKIDFVEEMNSYVLLSVSTRFIRDWITSRYLDQILQIVKTYKKDLT 60 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL---- 158 RI+ +EK + + I N +K+ + +S + + L Sbjct: 61 RIE----------FKIIEKNSENE-------IENNFTKNE---NNENVSFIKDTYLQYNR 100 Query: 159 -DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 D F FI G+SN++A A+ ++E SH NPL+I+ VG+GKTHLL +I Sbjct: 101 IDPNKRFDNFITGTSNKLAYEASMKVSENISH------YNPLYIYGGVGMGKTHLLNSIG 154 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 S+K + +V++++AE FM++F +I+ N + K+ RN D+LLIDD+QF+ GK + Sbjct: 155 -LSLKEKN--KVMFISAERFMYQFVKSIKSNDMVKFKEYFRNTDILLIDDIQFMNGKEAM 211 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+LLD QV+ +ADR P++L + RI+SR GG+ V + DYE+R I+ Sbjct: 212 QEEFFHTFNALLDKGSQVIISADRAPNKLSRIQDRIKSRFAGGLVVDIQKPDYELRSKIV 271 Query: 337 KNRLA-ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIAD 394 K + ++ ++NI+EE+ ++ +TTS REL GA N++V F + + Sbjct: 272 KQKTEELNIFYSNQVNISEEIQKFISTEITTSIRELVGAINRVVSFSRIYNKVPNLSEVK 331 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L L+N GE K + I+ IQ V K + IS++++LS+RR R +VRPRQ A+YL+KI+T Sbjct: 332 VVLKDLLNIGENK-VTIDLIQSTVCKFFKISKSEMLSSRRSRYLVRPRQTAIYLTKILTS 390 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIGR F +RDHTT++H+V+ +EK+ E D + + LK I Sbjct: 391 KSLPEIGREFSNRDHTTIIHSVKTIEKLKEKDPEMTNNINNLKNQI 436 >gi|91762459|ref|ZP_01264424.1| Chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718261|gb|EAS84911.1| Chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1002] Length = 470 Score = 296 bits (758), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 172/481 (35%), Positives = 285/481 (59%), Gaps = 42/481 (8%) Query: 32 EVNCESI-FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +V+ E++ + ++ +KN++G D+Y SW +++ F +++ V LSV T F++ WI +RYL Sbjct: 12 DVSSEALDWALIQKDMKNKLGSDIYESWLRKIDFVEEMNSYVLLSVSTRFIRDWITSRYL 71 Query: 91 ETI---TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + I K ++++ +RI+ +EK + + I N +K+ Sbjct: 72 DQILQIVKTYKKDLTRIE----------FKIIEKNSENE-------IENNFTKNE---NN 111 Query: 148 QTISPVFGSPL-----DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + +S + + L D F FI G+SN++A A+ ++E SH NPL+I+ Sbjct: 112 ENVSFIKDTYLQYNRIDPNKRFDNFITGTSNKLAYEASMKVSENISH------YNPLYIY 165 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VG+GKTHLL +I S+K + +V++++AE FM++F +I+ N + K+ RN D+ Sbjct: 166 GGVGMGKTHLLNSIG-LSLKEKN--KVMFISAERFMYQFVKSIKSNDMVKFKEYFRNTDI 222 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ GK +Q EF H N+LLD QV+ +ADR P++L + RI+SR GG+ Sbjct: 223 LLIDDIQFMNGKEAMQEEFFHTFNALLDKGSQVIISADRAPNKLSRIQDRIKSRFAGGLV 282 Query: 322 VPLGLHDYEMRFSILKNRLA-ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV- 379 V + DYE+R I++ + ++ ++NI+EE+ ++ +TTS REL GA N++V Sbjct: 283 VDIQKPDYELRNKIVRQKTEELNIFYSNQVNISEEIQKFISTEITTSIRELVGAINRVVS 342 Query: 380 FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F + + +L L+N GE K + I+ IQ V K + IS++++LS+RR R +V Sbjct: 343 FSRIYNKVPNLSEVKVVLKDLLNIGENK-VTIDLIQSTVCKFFKISKSEMLSSRRSRYLV 401 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ A+YL+KI+T +S PEIGR F +RDHTT++H+V+ +EK+ E D + + LK Sbjct: 402 RPRQTAIYLTKILTSKSLPEIGREFSNRDHTTIIHSVKTIEKLKEKDPEMTNNINNLKNQ 461 Query: 500 I 500 I Sbjct: 462 I 462 >gi|58584534|ref|YP_198107.1| chromosomal replication initiation protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|71151810|sp|Q5GT09|DNAA_WOLTR RecName: Full=Chromosomal replication initiator protein DnaA gi|58418850|gb|AAW70865.1| ATPase involved in DNA replication initiation, DnaA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 460 Score = 295 bits (756), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 173/468 (36%), Positives = 265/468 (56%), Gaps = 46/468 (9%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + + L N G Y SW LKF S + V LSVPT F+K WI Y+E I L+Q E Sbjct: 29 IQNLLYNLYGEATYNSWLSSLKFVSSSNGEVLLSVPTRFIKEWITVHYMEKILLLWQNED 88 Query: 102 SRIQGVEILV--RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 I ++I V + S+ S+ L GSPLD Sbjct: 89 KSICSIDIQVTEEKNSSSSIISKNKEESVNNL-----------------------GSPLD 125 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA- 217 RF F F+ G N +A TAA+ +AE +D + NPLF++ VGLGKTHL+ AIA Sbjct: 126 PRFTFDNFVVGKPNELAFTAAKRVAESIDPIPGS----NPLFLYGGVGLGKTHLMHAIAW 181 Query: 218 ----NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 + S KR +VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ G Sbjct: 182 HIVNSPSAKR----KVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISG 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R Sbjct: 238 KDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 IL+ ++ E + + ++VL +AR + ++ REL+GA N++ +T E Sbjct: 298 LGILQAKV-----EQMNMYVPQDVLEFLARNIRSNIRELEGALNKVAHTSLIGRSMTVES 352 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L+ + + + I +IQ+ +A+ +NI D+ SNRR+R++VRPRQ+AMY +K Sbjct: 353 ASETLMDLLRSNH-RSITIAEIQKKIAEFFNIKVTDMHSNRRLRSLVRPRQIAMYFAKKF 411 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T +S P+IGR FG RDH TV+HAV+++E ++TD E+ L+++ Sbjct: 412 THKSLPDIGRSFGGRDHATVIHAVKQIENFIKTDSEFADEINQLRKMF 459 >gi|209542189|ref|YP_002274418.1| chromosomal replication initiator protein DnaA [Gluconacetobacter diazotrophicus PAl 5] gi|209529866|gb|ACI49803.1| chromosomal replication initiator protein DnaA [Gluconacetobacter diazotrophicus PAl 5] Length = 477 Score = 293 bits (751), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 177/467 (37%), Positives = 280/467 (59%), Gaps = 21/467 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + SRL+ +VG Y +W +++ V + + L++PT FL+ W++ +Y + ++ L+ Sbjct: 25 WSRICSRLQAEVGEVEYRTWLKQISIGPVDGDEITLNLPTRFLRDWVRTQYGDRLSALWN 84 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP---VFG 155 E I+ VE+ V P E A + P + I+G + + Sbjct: 85 AELPAIRRVEL---QVGRP--EGAADGAAPAPADPPVAATPATAAIVGDERVPENRNDLA 139 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PLD RF F TF+ G N A A+ +AE S + NPLF++ VGLGKTHL+ A Sbjct: 140 APLDPRFTFDTFVVGKPNEFAYACARRVAERPS----SPGFNPLFLYGGVGLGKTHLMHA 195 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + + R + V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL GK Sbjct: 196 IG-SELVRGGAVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFLIGKD 254 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ + +E+R S Sbjct: 255 NTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRIS 314 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIA 393 IL+++ A S P +VL +A +T++ REL+GA N+L+ + F +T E Sbjct: 315 ILESKAAASGVAVPA-----KVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEAT 369 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++L H + +++ IE+IQR V++H+NI D+ S RR R V RPRQVAMYL+K +T Sbjct: 370 QDVL-HDILKAHDRRVTIEEIQRKVSEHWNIRLTDMSSARRARAVARPRQVAMYLAKQLT 428 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RS PEIGR+FG+RDHTTV+HAV +V +++E D ++VELL+R++ Sbjct: 429 SRSLPEIGRKFGNRDHTTVMHAVARVTELMERDTAFAEDVELLRRML 475 >gi|288959510|ref|YP_003449851.1| chromosomal replication initiator protein [Azospirillum sp. B510] gi|288911818|dbj|BAI73307.1| chromosomal replication initiator protein [Azospirillum sp. B510] Length = 505 Score = 293 bits (750), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 184/510 (36%), Positives = 282/510 (55%), Gaps = 53/510 (10%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ + + + RLK +VG + SW Q L S++ V + VPT F++ W+ Y + Sbjct: 5 VSLDQQWARIRGRLKEEVGEIAFRSWLQPLSVASLVGGEVCIVVPTRFMRDWVLTHYADR 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSV-----------------------EKTASS---- 125 I L+ E+ +Q ++++V S P+ + A+S Sbjct: 65 IRALWSGENPEVQSIDVIVASTNPPAALVADNDDSDDDRPPPRAAESRPAPRQAASLPPR 124 Query: 126 PSITKLS--PINTNISKSPIILGKQTISPV-----------FGSPLDSRFVFSTFIEGSS 172 PS LS P + + S G SP + LD RF F F+ G Sbjct: 125 PSDAGLSGEPAPSTVYTSASYGGASDESPTAVPAILEDRSDLSAALDPRFTFENFVVGKP 184 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N +A AA+ +A+ T V NPLF++ VGLGKTHL+ A+A K PN +V+YL Sbjct: 185 NELAHAAARRVADA-----TAVTFNPLFLYGGVGLGKTHLMHALAWQIRKNDPNRKVLYL 239 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 +AE FM++F A+R + K R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 240 SAEKFMYQFIRALRFKDTMAFKQQFRSVDVLMIDDVQFISGKDSTQEEFFHTFNALVDQN 299 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 +QV+ +AD+ PS+LE ++ R+RSRL G+ + YE+R IL+ + Q P Sbjct: 300 RQVIISADKSPSDLEGMEERLRSRLGWGLVADIHPTTYELRLGILQAKADALQATIPL-- 357 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMR 410 +VL +A +T++ REL+GA N++V ++ E E+L L+ + +++ Sbjct: 358 ---KVLEFLAHKITSNVRELEGALNRIVAHAELVGRSISLETTQEVLHDLLRAND-RRVT 413 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I++IQ+ VA+HYNI D+ S RR R V RPRQ+AMYL+K +T RS PEIGR+FG RDHT Sbjct: 414 IDEIQKRVAEHYNIRVADMHSARRARAVARPRQIAMYLAKQLTARSLPEIGRKFGGRDHT 473 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TV+HAV+KVE++ TD + ++VELL+R++ Sbjct: 474 TVMHAVKKVEELRTTDPSFAEDVELLRRML 503 >gi|157826881|ref|YP_001495945.1| chromosomal replication initiation protein [Rickettsia bellii OSU 85-389] gi|166214697|sp|A8GVN1|DNAA_RICB8 RecName: Full=Chromosomal replication initiator protein DnaA gi|157802185|gb|ABV78908.1| chromosomal replication initiation protein [Rickettsia bellii OSU 85-389] Length = 463 Score = 292 bits (748), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 169/448 (37%), Positives = 273/448 (60%), Gaps = 23/448 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NSVNVWSNVTQDLYNYYGEALYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYSVVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ VEI+ + LP AS+ + +L P T L + I Sbjct: 74 LQLFQHYNNAIKTVEIITKE--LP-----ASNQATLEL-PTKTFADIGSSELNSENIFST 125 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F D RF F F+ G+ N +A AA+++AE S NPLF++ VGLGKTHL+ Sbjct: 126 F----DIRFTFDNFVVGAPNELAYAAARAVAESSS---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVMSFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L+ ++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDDIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 IL++++ E + + ++ + +A + ++ REL+GA N+++ +F A +T E Sbjct: 299 LGILESKI-----EQMNVKVPKDAIDFLASKIVSNVRELEGALNKVIAHSNFTAKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + E + + +EDIQ+ VA YNI +D+ S RR+RT+ RPRQ+AMYLSKI Sbjct: 354 NTQNILRDLLRSNE-RIITVEDIQKKVANRYNIKLSDMSSPRRMRTIARPRQIAMYLSKI 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +TP+S +IG++FG +DHTTV+HA++KV Sbjct: 413 LTPKSLVDIGKKFGKKDHTTVMHAIKKV 440 >gi|317126742|ref|YP_004093024.1| chromosomal replication initiator protein DnaA [Bacillus cellulosilyticus DSM 2522] gi|315471690|gb|ADU28293.1| chromosomal replication initiator protein DnaA [Bacillus cellulosilyticus DSM 2522] Length = 451 Score = 292 bits (748), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 167/469 (35%), Positives = 268/469 (57%), Gaps = 29/469 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLE 91 N ++ +++ +V + +WF+ K S+ N + + P F + W++NRY Sbjct: 3 NLNDLWDQALKKIEEKVSKPSFDTWFKFTKADSIDQSTNTITVIAPNEFARDWLENRYFA 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL-SPINTNISKSPIILGKQTI 150 IT+ E + G E+ R + LP +K + K+ SP SK+P+ + Sbjct: 63 IITETLNE----LTGAELEARFI-LPKEDKNDDIELLEKVKSP-----SKAPVTTNDEKP 112 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 113 KHM----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I +PN +VVYL++E F F ++IRDN A+N ++ RN+D+LLIDD+QF Sbjct: 164 HLMHAIGHYVIDHKPNAKVVYLSSEKFTNEFINSIRDNKAVNFRNKYRNVDVLLIDDIQF 223 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 224 LAGKEQTQEEFFHTFNALHEERKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + L+I EV++++A + T+ REL+GA ++V S + Sbjct: 284 ETRIAILRKKAKAEN-----LDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINQDM 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A L ++ + K + I+DIQ+ VA+ + I +L + +R + V PRQ+AMYL Sbjct: 339 NADLAAVALKDIIPNAKPKTITIKDIQKTVAETFQIRVEELKAKKRTKNVAYPRQIAMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 S+ +T S P+IG FG RDHTTV+HA K+ K+ TD L+K+++ +K Sbjct: 399 SRELTDNSLPKIGTEFGGRDHTTVIHAHEKITKLFSTDSDLQKQIQEIK 447 >gi|296533903|ref|ZP_06896430.1| DNA-directed DNA replication initiator protein [Roseomonas cervicalis ATCC 49957] gi|296265778|gb|EFH11876.1| DNA-directed DNA replication initiator protein [Roseomonas cervicalis ATCC 49957] Length = 365 Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 157/351 (44%), Positives = 233/351 (66%), Gaps = 17/351 (4%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD-SHGYTTVRLNPLFIHASVGLGKTHL 212 + +PLD RF F +F+ G N A A+ +AE S G+ NPLF++ VGLGKTHL Sbjct: 26 WAAPLDPRFTFDSFVVGKPNEFAHACARRVAEKPASPGF-----NPLFLYGGVGLGKTHL 80 Query: 213 LQAIANA-SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 + +IA A S Q N V Y++AE FM+RF +A+R + K+SLR++D+L+IDD+QFL Sbjct: 81 MHSIAWAISFNGQRN--VAYMSAEKFMYRFIAALRSQSTMEFKESLRSVDVLMIDDLQFL 138 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L+D+ KQ+V +AD+ PS+L L+ R+R+RL G+ + YE Sbjct: 139 IGKDNTQEEFFHTFNALVDAGKQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTYE 198 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 +R SIL+ ++ + ++++ VL +A +T++ REL+GA N+L+ + F +T Sbjct: 199 LRISILQ-----AKAQGAEVDVPPRVLEFLAHKITSNVRELEGALNRLIAHANLFGRPIT 253 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E A E+L H + +++ IE+IQR VA+HYNI D+ S RR R V RPRQVAMYL+ Sbjct: 254 LESAQEVL-HDILRAHDRRVTIEEIQRKVAEHYNIRLTDMSSARRARNVARPRQVAMYLA 312 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T RS PEIGRRFG+RDHTTV+HAV +V +++++D T ++VELL+R++ Sbjct: 313 KQLTSRSLPEIGRRFGNRDHTTVMHAVSRVAELMQSDSTFAEDVELLRRML 363 >gi|56961783|ref|YP_173505.1| chromosomal replication initiation protein [Bacillus clausii KSM-K16] gi|61212498|sp|Q5WM31|DNAA_BACSK RecName: Full=Chromosomal replication initiator protein DnaA gi|56908017|dbj|BAD62544.1| chromosome replication initiator protein DnaA [Bacillus clausii KSM-K16] Length = 451 Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 159/466 (34%), Positives = 275/466 (59%), Gaps = 26/466 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN-IVHLSVPTNFLKAWIKNRYLET 92 N + ++ V +K +V Y +W + K +++ +N + ++ P F + W+++ Y Sbjct: 3 NIDDLWNKVLEEMKKKVSKPSYETWLRATKANALQNNDTIIVTAPNEFARDWLEDHYSGL 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + ++ + G + + V ++ + P T +P +++ G+ T+S Sbjct: 63 TSDIIEQ----LTGARLTPKFVIPQHNQEEEALPEQTPQTPPEKDVA------GQSTLSQ 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F+TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 TM---LNDKYTFNTFVIGSGNRFAHAASLAVAEAPARAY-----NPLFIYGGVGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + ++ PN +VVYL++E F F +AIRDN A++ ++ RN+D+LLIDD+QF+ Sbjct: 165 MHAIGHYVMEHNPNAKVVYLSSEKFTNEFINAIRDNKAVHFRNKYRNVDVLLIDDIQFIA 224 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK+ Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 225 GKIQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 284 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + ++ E+ L+I EV++++A + T+ REL+GA ++V S + A Sbjct: 285 RIAILRKK---AKAEN--LDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINQDMNA 339 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L ++ K + I DIQ++V +H+ + D + +R ++V PRQ+AMYLS+ Sbjct: 340 DLAAEALKDIIPNAMPKTLTITDIQKLVGEHFQVKLEDFKAKKRTKSVAFPRQIAMYLSR 399 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 MT S P+IG FG RDHTTV+HA K+ K+L TD L+++V+ + Sbjct: 400 EMTDASLPKIGSEFGGRDHTTVIHAHEKISKLLATDQELQQKVQAI 445 >gi|89069837|ref|ZP_01157172.1| chromosomal replication initiation protein [Oceanicola granulosus HTCC2516] gi|89044638|gb|EAR50754.1| chromosomal replication initiation protein [Oceanicola granulosus HTCC2516] Length = 452 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 160/466 (34%), Positives = 274/466 (58%), Gaps = 28/466 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V ++ VG + +W + L F ++ ++ SVPT F+ ++ Y + I L Sbjct: 10 VKQEMRGAVGESKFTNWIEPLVFETLRDGVLTCSVPTLFIGNYVNQNYADQIVYLLARAG 69 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 ++ + +VR+ ++ P+ + +++S + L+ R Sbjct: 70 QEVERLSFVVRNDETAGPQQQKQQPAAPAAAGARRGVAES--------------ARLEER 115 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F TF+ G N +A AA+ +AE Y NPLF++ GLGKTHL+ AIA+ Sbjct: 116 YTFDTFVVGKPNALAHAAARRVAEGGPVAY-----NPLFLYGGNGLGKTHLMHAIAHDMR 170 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 + +P L V+YL+A+ FM+RF +A+R+ ++ K R++D+L++DD+QF+ GK Q EF Sbjct: 171 QNRPELDVLYLSADQFMYRFVTALRERKMMDFKHFFRSVDVLMVDDVQFIAGKDSTQEEF 230 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L D+ KQ+V +AD P E+ L+ RI SRL G+ V L DYE+R IL++++ Sbjct: 231 FHTFNALADAGKQIVISADCAPGEIRDLENRISSRLASGLVVDLHPTDYELRLGILQSKV 290 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL---- 396 + + P+L + + VL +A ++ + R L+G+ +L +FA ++ EI EL Sbjct: 291 EQYRSQHPELVVADGVLEFLAHRISNNVRVLEGSLTRLF---AFASLVGKEINLELTQDC 347 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ ++ + +K+ I++IQR V++HYNI +DL+ RR+R+ RPRQ+AM+LSK +T RS Sbjct: 348 LADILRASD-RKITIDEIQRKVSEHYNIRLSDLIGPRRMRSYARPRQIAMWLSKQLTNRS 406 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIG+RFG RDHTT++H VRK++++ +TD + +++E+L+R + + Sbjct: 407 LPEIGKRFGGRDHTTIMHGVRKIDELRQTDSAISEDLEMLRRTLEQ 452 >gi|157690799|ref|YP_001485261.1| chromosomal replication initiation protein [Bacillus pumilus SAFR-032] gi|167016898|sp|A8F8Y4|DNAA_BACP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|157679557|gb|ABV60701.1| DNA-directed DNA replication initiator protein [Bacillus pumilus SAFR-032] Length = 446 Score = 290 bits (743), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 156/455 (34%), Positives = 266/455 (58%), Gaps = 28/455 (6%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +++ ++ + +W + K HS+ + + ++ P F + W+++RYL I E + Sbjct: 14 KIETKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYE----L 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 G E+ ++ + + ++ + P SPI + P+ + + ++P ++ F Sbjct: 70 TGEELSIKFIIPQNQDEVEAMPK----SPIKKMSKEDPVDIPQNMLNP--------KYTF 117 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + I Sbjct: 118 DTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYVIDHN 172 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q EF H Sbjct: 173 PSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHT 232 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 233 FNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAE 292 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVN 402 L+I EV++++A + ++ REL+GA ++V S + A++A E L ++ Sbjct: 293 -----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIP 347 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + + + + I+DIQR+V + +NI D + +R ++V PRQ+AMYLS+ MT S P+IG Sbjct: 348 SSKPRVITIKDIQRIVGQQFNIRLEDFKAKKRTKSVAYPRQIAMYLSREMTDSSLPKIGE 407 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 FG RDHTTV+HA K+ K++ D L++ V+ +K Sbjct: 408 EFGGRDHTTVIHAHEKISKLMVEDEQLQQHVKEIK 442 >gi|330994264|ref|ZP_08318192.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] gi|329758731|gb|EGG75247.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] Length = 476 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 175/474 (36%), Positives = 275/474 (58%), Gaps = 26/474 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + RLK +VG Y +W +++ V + + L +PT FL+ W++ +Y + + L+ Sbjct: 15 WSRICERLKVEVGEVEYRTWLRQITVGPVDEDEITLYLPTRFLRDWVRGQYGDRLGTLWN 74 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASS-----PSITKLSPINTNISKSPIILGKQTISPV 153 E I+ VE+ VA P+ + + P SP + + P Sbjct: 75 AEVPAIRRVEL---QVARPATDAAPAGREDTPPVPAAPSPDRAAPRPAASAPVPEEPRPA 131 Query: 154 -----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +PLD RF F TF+ G N A A+ +AE S + NPLF++ VGLG Sbjct: 132 EVRTDLAAPLDQRFTFDTFVVGKPNEFAYACARRVAEQPS----SPGFNPLFLYGGVGLG 187 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ +I A + R+ + V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+ Sbjct: 188 KTHLMHSI-GAELVREGRVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDL 246 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ + Sbjct: 247 QFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHAT 306 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 +E+R SIL+ + S + + +VL +A +T++ REL+GA N+L+ + F Sbjct: 307 TFELRISILEAKATAS-----GVVVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGR 361 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E ++L H + +++ IE+IQR VA+H+NI D+ S RR R V RPRQVAM Sbjct: 362 PVTLEATQDVL-HDILKAHDRRVTIEEIQRKVAEHWNIRLTDMSSARRARAVARPRQVAM 420 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL+K +T RS PEIGR+FG+RDHTTV+HAV +V ++ D ++VELL+R++ Sbjct: 421 YLAKQLTSRSLPEIGRKFGNRDHTTVIHAVSRVTGLMAEDPAFAEDVELLRRML 474 >gi|194016318|ref|ZP_03054932.1| chromosomal replication initiator protein DnaA [Bacillus pumilus ATCC 7061] gi|194011791|gb|EDW21359.1| chromosomal replication initiator protein DnaA [Bacillus pumilus ATCC 7061] Length = 446 Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 156/455 (34%), Positives = 266/455 (58%), Gaps = 28/455 (6%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +++ ++ + +W + K HS+ + + ++ P F + W+++RYL I E + Sbjct: 14 KIETKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYE----L 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 G E+ ++ + + ++ + P SPI + P+ + + ++P ++ F Sbjct: 70 TGEELSIKFIIPQNQDEVEAMPK----SPIKKMSKEDPVDIPQNMLNP--------KYTF 117 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + I Sbjct: 118 DTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYVIDHN 172 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q EF H Sbjct: 173 PSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHT 232 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 233 FNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAE 292 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVN 402 L+I EV++++A + ++ REL+GA ++V S + A++A E L ++ Sbjct: 293 -----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIP 347 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + + + + I+DIQR+V + +NI D + +R ++V PRQ+AMYLS+ MT S P+IG Sbjct: 348 SSKPRIITIKDIQRIVGQQFNIRLEDFKAKKRTKSVAYPRQIAMYLSREMTDSSLPKIGE 407 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 FG RDHTTV+HA K+ K++ D L++ V+ +K Sbjct: 408 EFGGRDHTTVIHAHEKISKLIVEDEQLQQHVKEIK 442 >gi|188584643|ref|YP_001916188.1| chromosomal replication initiator protein DnaA [Natranaerobius thermophilus JW/NM-WN-LF] gi|226735829|sp|B2A2Y6|DNAA_NATTJ RecName: Full=Chromosomal replication initiator protein DnaA gi|179349330|gb|ACB83600.1| chromosomal replication initiator protein DnaA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 453 Score = 290 bits (741), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 159/469 (33%), Positives = 270/469 (57%), Gaps = 24/469 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N E +++ LK Q+ + +WFQ + + +++SVP F K W+ +RY +I Sbjct: 4 NMEELWSKTLEELKQQLSKPSFETWFQSTEPVEMSSTDLYISVPNEFTKDWLNSRYKNSI 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + +I G ++ ++ + K + + P +T+ K + Sbjct: 64 ENSLK----KISGKQLKIKFLLPGEKIKMEEQNNENEEKPESTS--------KKSSQGSE 111 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F TF+ G++NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 112 HTTWLNPKYTFDTFVIGNANRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 166 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + QPN RVVY+++E F F +AIRDN +N ++ RN+D+LL+DD+QFL G Sbjct: 167 HAIGHYVLSHQPNYRVVYISSEKFTNEFINAIRDNKTVNFRNKYRNVDILLVDDIQFLAG 226 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 227 KEQTQEEFFHTFNTLHENDKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQAPDLETR 286 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + + KL+I +V++++A + T+ REL+G +++ S A +T E Sbjct: 287 IAILRKKAYLE-----KLDIPNDVIVYIANQIDTNIRELEGGLIRVIAYSSMANKKITKE 341 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A+E L ++ + KKM +E IQ+ VA+++ + +DL + +R R+V PRQ+AMYL++ Sbjct: 342 TAEEALKDILPNKQPKKMTVEHIQKTVAQYFGLKVDDLKAKKRTRSVAFPRQIAMYLARE 401 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ L+ + L + ++ +K L+ Sbjct: 402 LTDSSLPKIGDEFGGRDHTTVMHAHDKIASDLKKESHLNETIDEIKNLL 450 >gi|254456286|ref|ZP_05069715.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. HTCC7211] gi|207083288|gb|EDZ60714.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. HTCC7211] Length = 469 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 173/479 (36%), Positives = 284/479 (59%), Gaps = 39/479 (8%) Query: 33 VNCESI-FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 +N ES + +V + +KN++G D+Y SW +++ F +N + LSVPT F++ WI +RYL+ Sbjct: 10 LNPESFDWKLVQNEMKNKLGLDIYESWLKKITFVDEFNNYLLLSVPTRFIRDWITSRYLD 69 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I ++ R+ +I+ + +K+ + IN +I K I + +S Sbjct: 70 QILQII-----RLYKKDIIRIEFKIDDQDKSQN---------INEDIKKP--IERNENVS 113 Query: 152 PVFGSPL-----DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + S L D F FI G+SN++A A+ ++E SH NPL+I+ VG Sbjct: 114 FIKDSYLQYNRIDPNKRFDNFIIGTSNKLAYEASLKVSENTSH------YNPLYIYGGVG 167 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHLL +I ++ + N +V++++AE FM++F +I+ N + K+ RN D+LLID Sbjct: 168 MGKTHLLNSIG---LELKDNNKVMFISAERFMYQFVKSIKANDMVKFKEYFRNTDILLID 224 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK +Q EF H N+LLD Q++ +ADR P++L + RI+SR GG+ V + Sbjct: 225 DIQFISGKEAMQEEFFHTFNALLDKGSQIIVSADRAPNKLSRIQDRIKSRFSGGLVVDIQ 284 Query: 326 LHDYEMRFSILKNRLA-ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHS 383 D E+R I++ + ++ +L +++++ ++R +T S REL GA N++V F Sbjct: 285 KPDLELRKKIVEKKTEELNSLYADQLQVSKDIQDFISREITASIRELVGAINRVVSFSRI 344 Query: 384 F--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + AP L+ +L L+N E K + I+ IQ +V K + IS+N++LS+RR R +VRP Sbjct: 345 YNKAPNLSE--TKVILKDLLNLAENK-VTIDLIQTIVCKFFKISKNEMLSSRRSRYLVRP 401 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ A+YL+KI+T +S PEIGR F +RDHTT++H+V+ +EK+ E D + + LK I Sbjct: 402 RQTAIYLTKILTSKSLPEIGREFSNRDHTTIIHSVKTIEKIKEKDPEMVDNINKLKNQI 460 >gi|229099916|ref|ZP_04230839.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-29] gi|228683531|gb|EEL37486.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-29] Length = 446 Score = 289 bits (740), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 267/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L PI N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEDI-DLPPIKKNRAQDDSTHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLISKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|301051742|ref|YP_003789953.1| chromosomal replication initiation protein [Bacillus anthracis CI] gi|300373911|gb|ADK02815.1| chromosomal replication initiation protein [Bacillus cereus biovar anthracis str. CI] Length = 446 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 266/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P TN ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEEI-DLPPAKTNAAQDDSNHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|228942638|ref|ZP_04105170.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975568|ref|ZP_04136120.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982204|ref|ZP_04142493.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis Bt407] gi|228777556|gb|EEM25834.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis Bt407] gi|228784178|gb|EEM32205.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817064|gb|EEM63157.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937798|gb|AEA13694.1| chromosomal replication initiation [Bacillus thuringiensis serovar chinensis CT-43] Length = 446 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 266/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ S I L P+ N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQSEEDI-DLPPVKRNPAQDDSAHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|212637850|ref|YP_002314370.1| chromosomal replication initiation protein [Anoxybacillus flavithermus WK1] gi|226735773|sp|B7GFK8|DNAA_ANOFW RecName: Full=Chromosomal replication initiator protein DnaA gi|212559330|gb|ACJ32385.1| DNA replication initiation ATPase [Anoxybacillus flavithermus WK1] Length = 447 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 163/469 (34%), Positives = 276/469 (58%), Gaps = 28/469 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ + ++ ++ + +W + HS+ +I+ ++VP F K W+++RY Sbjct: 3 NISDLWNKALAEIEKKISKPSFETWLKSTTAHSLKGDILIITVPNEFTKDWLESRY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 T+L ++ I G E+ ++ +P+ + T L P SK +QT P Sbjct: 59 TRLIEQTLYDITGEELKIK-CTIPNHQTTEE----FDLKPT----SKPRKHDDEQTEFP- 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 109 -QSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 162 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + ++ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QFL G Sbjct: 163 HAIGHYVLEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQFLAG 222 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 223 KEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 282 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + +I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 283 IAILRKKAKAE-----GFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEINAD 337 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + K + I+DIQR+V +H+N+ D + +R ++V PRQ+AMYLS+ Sbjct: 338 LAAEALKDIIPSSKPKVITIQDIQRVVGEHFNVKLEDFKAKKRTKSVAFPRQIAMYLSRE 397 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG FG RDHTTV+HA K+ +++TD+ L+K++ E++++L Sbjct: 398 LTDCSLPKIGEEFGGRDHTTVIHAHEKISALIQTDVQLQKQLKEIMEKL 446 >gi|52078492|ref|YP_077283.1| chromosomal replication initiation protein [Bacillus licheniformis ATCC 14580] gi|52783856|ref|YP_089685.1| chromosomal replication initiation protein [Bacillus licheniformis ATCC 14580] gi|319648518|ref|ZP_08002734.1| chromosomal replication initiator protein dnaA [Bacillus sp. BT1B_CT2] gi|71151793|sp|Q65PM2|DNAA_BACLD RecName: Full=Chromosomal replication initiator protein DnaA gi|52001703|gb|AAU21645.1| DnaA [Bacillus licheniformis ATCC 14580] gi|52346358|gb|AAU38992.1| DnaA [Bacillus licheniformis ATCC 14580] gi|317389597|gb|EFV70408.1| chromosomal replication initiator protein dnaA [Bacillus sp. BT1B_CT2] Length = 446 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 157/466 (33%), Positives = 265/466 (56%), Gaps = 28/466 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ +++ ++ + +W + K HS+ + + ++ P F + W+++RYL I Sbjct: 3 NISDLWNQALGQIEKKLSKPSFETWMKSTKAHSLQGDTLIITAPNEFARDWLESRYLHLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + G E+ ++ V + + + SPI + P + ++P Sbjct: 63 ADTIYD----LTGEELSIKFV----IPQNQNEEDFMPKSPIKKMSKEEPADFPQNMLNP- 113 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 114 -------KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNTLHEETKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + K + I+DIQR+V + +NI D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPSSKPKVITIKDIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 MT S P+IG FG RDHTTV+HA K+ K+L D L+++++ +K Sbjct: 397 MTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLSDDEQLQQQIKEIK 442 >gi|83591341|ref|YP_425093.1| chromosomal replication initiation protein [Rhodospirillum rubrum ATCC 11170] gi|83574255|gb|ABC20806.1| chromosomal replication initiator protein, DnaA [Rhodospirillum rubrum ATCC 11170] Length = 509 Score = 288 bits (738), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 177/484 (36%), Positives = 275/484 (56%), Gaps = 40/484 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LK + G Y +W + + + V L+VPT F++ W+ N Y + I L+ E S I+ Sbjct: 35 LKREFGDSAYRTWVVPMTLVAAVEGEVRLAVPTRFMRDWVMNHYGDRIRSLWAAEDSSIR 94 Query: 106 GVEILVRSVALPSVE----------KTASSPSITK-------------LSPINTNISKSP 142 V+ +V S P+ + AS P+ + S ++ Sbjct: 95 YVDFIVESAPAPAPPARAGQDADRAEGASDPAAGQRPAEAGAPRPAARASRTMVRVAAEG 154 Query: 143 IILGKQTI-SPV---FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 G + +P+ +PLD RF F F+ G N A AA+ +A+ T V NP Sbjct: 155 GAEGADSAPAPLDDGISAPLDPRFTFDNFVVGKPNEFAYAAAKRVAD-----STGVAFNP 209 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LF++ VGLGKTHL+ AIA + P+ RV+YL+AE FM RF A+R ++ K+ R Sbjct: 210 LFLYGGVGLGKTHLMHAIARGIREASPHRRVIYLSAEQFMHRFIRALRQQDTMSFKEQFR 269 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ++++L++DD+QF+ GK Q EF H N+L+D Q+V +AD+ P++LE++ R+RSR+ Sbjct: 270 SVEVLMVDDIQFISGKDSTQEEFFHTFNALVDQGSQIVLSADKSPTDLENIGARLRSRMA 329 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ L YE+R IL+ S+ E +++ E+VL +A + ++GRE++GA + Sbjct: 330 CGLVADLHPTTYELRLGILE-----SKAEHMGVSVPEKVLEFIAHKIASNGREVEGALIR 384 Query: 378 LVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+ LT E A ++L L+ T + K++ +++IQ+ VA+H+ I D+ S RR R Sbjct: 385 LIAHAQLVGRDLTLETAQDVLHDLLRTYD-KRVTVDEIQKKVAEHFKIRLADMHSARRAR 443 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 V RPRQVAMYL K +T RS PEIG+ FG RDHTTV+HAVRKVE+++ D T ++VELL Sbjct: 444 AVARPRQVAMYLCKQLTSRSLPEIGKSFGGRDHTTVMHAVRKVEELILADGTFAEDVELL 503 Query: 497 KRLI 500 +R++ Sbjct: 504 RRML 507 >gi|30018279|ref|NP_829910.1| chromosomal replication initiation protein [Bacillus cereus ATCC 14579] gi|206970479|ref|ZP_03231432.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH1134] gi|218235327|ref|YP_002364856.1| chromosomal replication initiation protein [Bacillus cereus B4264] gi|228924234|ref|ZP_04087505.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955739|ref|ZP_04117734.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961753|ref|ZP_04123356.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051158|ref|ZP_04194702.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH676] gi|229072954|ref|ZP_04206150.1| Chromosomal replication initiator protein dnaA [Bacillus cereus F65185] gi|229112902|ref|ZP_04242433.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-15] gi|229130735|ref|ZP_04259688.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-Cer4] gi|229148039|ref|ZP_04276378.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST24] gi|229153648|ref|ZP_04281824.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1550] gi|229181735|ref|ZP_04309058.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 172560W] gi|296500839|ref|YP_003662539.1| chromosomal replication initiation protein [Bacillus thuringiensis BMB171] gi|38257412|sp|Q81JD5|DNAA_BACCR RecName: Full=Chromosomal replication initiator protein DnaA gi|226735776|sp|B7HIH4|DNAA_BACC4 RecName: Full=Chromosomal replication initiator protein DnaA gi|29893819|gb|AAP07111.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 14579] gi|206735056|gb|EDZ52225.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH1134] gi|218163284|gb|ACK63276.1| chromosomal replication initiator protein DnaA [Bacillus cereus B4264] gi|228601768|gb|EEK59266.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 172560W] gi|228629834|gb|EEK86487.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1550] gi|228635464|gb|EEK91955.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST24] gi|228652752|gb|EEL08637.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-Cer4] gi|228670581|gb|EEL25894.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-15] gi|228710200|gb|EEL62178.1| Chromosomal replication initiator protein dnaA [Bacillus cereus F65185] gi|228722221|gb|EEL73622.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH676] gi|228797947|gb|EEM44957.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803967|gb|EEM50591.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835452|gb|EEM80822.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321891|gb|ADH04819.1| chromosomal replication initiation protein [Bacillus thuringiensis BMB171] Length = 446 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 266/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P+ N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEDI-DLPPVKPNPAQDDSAHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|229118979|ref|ZP_04248324.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-3] gi|228664504|gb|EEL20000.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-3] Length = 446 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 266/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L PI N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEDID-LPPIKKNRAQDDSTHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|294085125|ref|YP_003551885.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664700|gb|ADE39801.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322] Length = 510 Score = 288 bits (737), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 168/482 (34%), Positives = 288/482 (59%), Gaps = 30/482 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ E+ + VS+R++ +G + SW + L+ S+ +N++ + ++ + + ++Y + Sbjct: 45 VDLEACWEKVSARMRIDLGDAAWRSWIKPLRVGSLHNNMLTIEADSSLARDRVNSQYADR 104 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT---KLSPINTNISK-------SP 142 + + E + ++ VE+ + +V S+ + A P IT K S N +K S Sbjct: 105 LRVISAAEFTGVKRVEVRL-AVRPQSIAERA--PRITDNDKGSAFAANSTKYDRAQSDSA 161 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + P+ G LD R+ F+ F+ G N +A A+ AE + V NPLF++ Sbjct: 162 TGATPEKFDPLAG--LDPRYTFANFVVGKPNELAFAVARRTAESEK-----VAFNPLFLY 214 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+ AIA ++ P+ +V+YL+AE FM+RF A+R ++ K+ R++D+ Sbjct: 215 GGVGLGKTHLMHAIAWHIREQAPSRKVMYLSAEKFMYRFVRALRFRDTMSFKEQFRSVDV 274 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 L+IDD+QF+ GK Q EF H N+L++ +QV+ +AD+ P++LE ++ R+RSRL G+ Sbjct: 275 LMIDDVQFISGKDSTQEEFFHTFNALVEDGRQVIISADKSPTDLEGMEERLRSRLGWGMV 334 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + DYE+R IL+ ++ E ++ I ++VL +A + ++ REL+GA N+ + Sbjct: 335 ADIHPADYELRLGILQ-----AKAERAQIQIPDKVLEFLAHKIVSNVRELEGALNR-IMA 388 Query: 382 HSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 H+ +T E A +LL+ L+ ++++ ++ IQ+ VA HY I +++ S RR R + Sbjct: 389 HAMLVGREITIESAADLLADLLR-ASSRQISVDAIQKRVAAHYGIRVSEMFSARRARNIA 447 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQVAMYL+K +T S+PEIGR+FG RDHTTV+HAV+ +E + +D L ++V+LL+ L Sbjct: 448 RPRQVAMYLTKNLTSLSYPEIGRQFGGRDHTTVMHAVKTIETLTLSDSRLGEDVDLLRSL 507 Query: 500 IS 501 +S Sbjct: 508 LS 509 >gi|228994208|ref|ZP_04154108.1| Chromosomal replication initiator protein dnaA [Bacillus pseudomycoides DSM 12442] gi|228995397|ref|ZP_04155069.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock3-17] gi|229003011|ref|ZP_04160870.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock1-4] gi|228758239|gb|EEM07425.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock1-4] gi|228764350|gb|EEM13225.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock3-17] gi|228765660|gb|EEM14314.1| Chromosomal replication initiator protein dnaA [Bacillus pseudomycoides DSM 12442] Length = 446 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 160/469 (34%), Positives = 264/469 (56%), Gaps = 28/469 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + K H++ +I+ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTKAHALKKDILTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + S + K IN + P Sbjct: 63 SETLYD----LTGAKLEIRFIIPQSQTEEEIDYPPAKKKRINDESNHLP----------- 107 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 108 -QSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAEG-----LDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V + + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVFQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINHIL 445 >gi|218895142|ref|YP_002443553.1| chromosomal replication initiator protein DnaA [Bacillus cereus G9842] gi|228905433|ref|ZP_04069388.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 4222] gi|228911329|ref|ZP_04075133.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 200] gi|229193740|ref|ZP_04320681.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 10876] gi|226735775|sp|B7IS20|DNAA_BACC2 RecName: Full=Chromosomal replication initiator protein DnaA gi|218545184|gb|ACK97578.1| chromosomal replication initiator protein DnaA [Bacillus cereus G9842] gi|228589765|gb|EEK47643.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 10876] gi|228848347|gb|EEM93197.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 200] gi|228854253|gb|EEM98956.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 4222] Length = 446 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 266/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P+ N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEDI-DLPPVKRNPAQDDSAHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|239825585|ref|YP_002948209.1| chromosomal replication initiation protein [Geobacillus sp. WCH70] gi|259645252|sp|C5D327|DNAA_GEOSW RecName: Full=Chromosomal replication initiator protein DnaA gi|239805878|gb|ACS22943.1| chromosomal replication initiator protein DnaA [Geobacillus sp. WCH70] Length = 450 Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 167/477 (35%), Positives = 270/477 (56%), Gaps = 40/477 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ V ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 3 NIHDLWNRVLGEIEKKISKPSFETWLKSTKAHSLRGDTLVIIAPNEFARDWLDSRY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPS-----VEKTASSPSITKLSPINTNISKSPIILGKQ 148 ++L E I G E+L++ + P+ E SS K +T+ +S Sbjct: 59 SRLIAETIYDITGEELLIKFITPPNQSEDDFEFQRSSKKHRKPYEESTDFPQSM------ 112 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLG Sbjct: 113 ---------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLG 158 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+ Sbjct: 159 KTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDI 218 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 219 QFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPP 278 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-P 386 D E R +IL+ + +I EV++++A + ++ REL+GA ++V S Sbjct: 279 DLETRIAILRKKAKAE-----GFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINK 333 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +TA++A E L ++ + + K + I+DIQR+V +H+NI D + +R ++V PRQ+AM Sbjct: 334 EITADLAAEALKDIIPSTKPKVITIQDIQRVVGQHFNIKLEDFKAKKRTKSVAFPRQIAM 393 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV----ELLKRL 499 YLS+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K + E LK+L Sbjct: 394 YLSRELTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDAQLQKHIKEIEEKLKQL 450 >gi|288554606|ref|YP_003426541.1| chromosomal replication initiation protein [Bacillus pseudofirmus OF4] gi|288545766|gb|ADC49649.1| chromosomal replication initiation protein [Bacillus pseudofirmus OF4] Length = 450 Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 164/473 (34%), Positives = 271/473 (57%), Gaps = 30/473 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ + ++ +V Y +W + K + + ++++ ++ P F + W++ Y Sbjct: 3 NIHDLWERALAEMEKKVSKPSYETWLKSTKANDIQNDVITITAPNEFARDWLEEHY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALP--SVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 L + + G + R V +P +E K P++ N S++ G +T+ Sbjct: 59 AGLTSDTIEHLTGARLTPRFV-IPQNELEDDFLIEPPKKKKPVSDNGSQNN---GTKTM- 113 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 114 ------LNDKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + PN +VVYL++E F F ++IRDN A+N ++ RN+D+LLIDD+QFL Sbjct: 163 LMHAIGHYVMDHNPNAKVVYLSSEKFTNEFINSIRDNRAVNFRNKYRNVDVLLIDDIQFL 222 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 223 AGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL+ + L+I EV++++A + T+ REL+GA ++V S + Sbjct: 283 TRIAILRKKAKAEN-----LDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINQDMN 337 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A++A E L ++ + K + I DIQ++V + Y++ D + +R ++V PRQ+AMYLS Sbjct: 338 ADLAAEALKDIIPNSKPKVLTITDIQKLVGEFYHVKLEDFKAKKRTKSVAYPRQIAMYLS 397 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRLIS 501 + MT S P+IG FG RDHTTV+HA K+ KML TD L+++V E++++L S Sbjct: 398 REMTDASLPKIGSEFGGRDHTTVIHAHEKISKMLTTDQELQQKVQEIMEQLRS 450 >gi|148552930|ref|YP_001260512.1| chromosomal replication initiation protein [Sphingomonas wittichii RW1] gi|148498120|gb|ABQ66374.1| chromosomal replication initiator protein DnaA [Sphingomonas wittichii RW1] Length = 477 Score = 286 bits (733), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 164/471 (34%), Positives = 267/471 (56%), Gaps = 36/471 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + + L+ +G + W + L + + L P+ F+ W +++ + Sbjct: 28 WETIRASLRRSIGVRTFDGWLKPLTLGDCDLASGTLKLIAPSEFMANWATTHFVDHL--- 84 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASS--PSITKLSPINTNISKSPIILGKQTISPVF 154 +QG L+ V S+ ++S P++ + + Sbjct: 85 -------LQGWRALLPQVRHVSIVPASASERPALFSAPTAPVAAPAVEEAMPAPSDDVRC 137 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+PL++R+ F +++ G +N VA AA+++AE G V NPLF+H GLGKTHL+ Sbjct: 138 GTPLEARYTFDSYVVGKANEVAYNAARTLAE----GGKLV-FNPLFLHGGTGLGKTHLMH 192 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + RQP +VVY++AE FM+ F SA+R + K LR D+L+IDD+QF+ GK Sbjct: 193 AIGHEYLARQPGAKVVYMSAEKFMFEFVSAMRAKDTFSFKQRLRAADVLMIDDVQFIAGK 252 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H +N L+ + +++V +ADR P +L+ ++ RI SRL G+ + D+E+R Sbjct: 253 ESTQEEFFHTMNELISAGRRLVISADRSPQDLDGIESRILSRLSWGLVADVNPADFELRL 312 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PI---- 387 +IL +L + P+ + ++V+M +AR ++ + REL+GA N++V + + P+ Sbjct: 313 NILMRKL----QGMPQAQVPQDVVMFLARRISANVRELEGALNRVVAYAALSGKPVDIDF 368 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 A +AD L ++ +++ I++IQR V+ HY I + ++ S RR R V RPRQVAMY Sbjct: 369 TQATLADILRAN------QRRVTIDEIQRKVSDHYRIRQAEMSSARRAREVARPRQVAMY 422 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 L+K +TPRS PEIGRRFG RDHTTV+HAV+++EK+ +TD L +V LL R Sbjct: 423 LAKQLTPRSLPEIGRRFGGRDHTTVIHAVKQIEKLRQTDAELDADVRLLIR 473 >gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein [Bacillus anthracis str. Ames] gi|47525255|ref|YP_016604.1| chromosomal replication initiation protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183040|ref|YP_026292.1| chromosomal replication initiation protein [Bacillus anthracis str. Sterne] gi|49479264|ref|YP_034361.1| chromosomal replication initiation protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145208|ref|YP_081620.1| chromosomal replication initiation protein [Bacillus cereus E33L] gi|65317469|ref|ZP_00390428.1| COG0593: ATPase involved in DNA replication initiation [Bacillus anthracis str. A2012] gi|165873037|ref|ZP_02217658.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0488] gi|167635044|ref|ZP_02393361.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0442] gi|167641739|ref|ZP_02399982.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0193] gi|170689462|ref|ZP_02880652.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0465] gi|170707519|ref|ZP_02897972.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0389] gi|177655268|ref|ZP_02936822.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0174] gi|190569280|ref|ZP_03022174.1| chromosomal replication initiator protein DnaA [Bacillus anthracis Tsiankovskii-I] gi|196036095|ref|ZP_03103495.1| chromosomal replication initiator protein DnaA [Bacillus cereus W] gi|196041966|ref|ZP_03109253.1| chromosomal replication initiator protein DnaA [Bacillus cereus NVH0597-99] gi|196045507|ref|ZP_03112738.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB108] gi|218901207|ref|YP_002449041.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH820] gi|227812679|ref|YP_002812688.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. CDC 684] gi|228918101|ref|ZP_04081629.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930495|ref|ZP_04093495.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949211|ref|ZP_04111479.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094600|ref|ZP_04225667.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-42] gi|229124992|ref|ZP_04254166.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 95/8201] gi|229187718|ref|ZP_04314854.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BGSC 6E1] gi|229600569|ref|YP_002864658.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0248] gi|254687070|ref|ZP_05150928.1| chromosomal replication initiation protein [Bacillus anthracis str. CNEVA-9066] gi|254724147|ref|ZP_05185932.1| chromosomal replication initiation protein [Bacillus anthracis str. A1055] gi|254735164|ref|ZP_05192874.1| chromosomal replication initiation protein [Bacillus anthracis str. Western North America USA6153] gi|254742127|ref|ZP_05199814.1| chromosomal replication initiation protein [Bacillus anthracis str. Kruger B] gi|254755963|ref|ZP_05207995.1| chromosomal replication initiation protein [Bacillus anthracis str. Vollum] gi|254761357|ref|ZP_05213379.1| chromosomal replication initiation protein [Bacillus anthracis str. Australia 94] gi|300118809|ref|ZP_07056529.1| chromosomal replication initiation protein [Bacillus cereus SJ1] gi|38257418|sp|Q81W35|DNAA_BACAN RecName: Full=Chromosomal replication initiator protein DnaA gi|61212525|sp|Q63HG7|DNAA_BACCZ RecName: Full=Chromosomal replication initiator protein DnaA gi|61212595|sp|Q6HQ03|DNAA_BACHK RecName: Full=Chromosomal replication initiator protein DnaA gi|226735774|sp|B7JJB7|DNAA_BACC0 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777883|sp|C3P8P5|DNAA_BACAA RecName: Full=Chromosomal replication initiator protein DnaA gi|254777884|sp|C3LIC2|DNAA_BACAC RecName: Full=Chromosomal replication initiator protein DnaA gi|30253517|gb|AAP24059.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. Ames] gi|47500403|gb|AAT29079.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. 'Ames Ancestor'] gi|49176967|gb|AAT52343.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. Sterne] gi|49330820|gb|AAT61466.1| chromosomal replication initiator protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978677|gb|AAU20227.1| chromosomal replication initiator protein [Bacillus cereus E33L] gi|164711249|gb|EDR16805.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0488] gi|167510293|gb|EDR85696.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0193] gi|167529518|gb|EDR92268.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0442] gi|170127515|gb|EDS96389.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0389] gi|170666564|gb|EDT17337.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0465] gi|172080195|gb|EDT65287.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0174] gi|190559587|gb|EDV13578.1| chromosomal replication initiator protein DnaA [Bacillus anthracis Tsiankovskii-I] gi|195991262|gb|EDX55230.1| chromosomal replication initiator protein DnaA [Bacillus cereus W] gi|196023714|gb|EDX62390.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB108] gi|196027221|gb|EDX65841.1| chromosomal replication initiator protein DnaA [Bacillus cereus NVH0597-99] gi|218539127|gb|ACK91525.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH820] gi|227005950|gb|ACP15693.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. CDC 684] gi|228595786|gb|EEK53470.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BGSC 6E1] gi|228658493|gb|EEL14159.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 95/8201] gi|228688847|gb|EEL42678.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-42] gi|228810494|gb|EEM56847.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829214|gb|EEM74851.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841581|gb|EEM86697.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264977|gb|ACQ46614.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0248] gi|298723777|gb|EFI64499.1| chromosomal replication initiation protein [Bacillus cereus SJ1] Length = 446 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 265/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEEI-DLPPAKPNAAQDDSNHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|229176165|ref|ZP_04303657.1| Chromosomal replication initiator protein dnaA [Bacillus cereus MM3] gi|228607324|gb|EEK64654.1| Chromosomal replication initiator protein dnaA [Bacillus cereus MM3] Length = 446 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 266/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEEI-DLPPSKPNSAQDDSNHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L +++ + K + I DIQ+ V Y I D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKNIIPNSKPKIISIYDIQKAVGDVYQIKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDYSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|154684519|ref|YP_001419680.1| chromosomal replication initiation protein [Bacillus amyloliquefaciens FZB42] gi|166201860|sp|A7Z0C3|DNAA_BACA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|154350370|gb|ABS72449.1| DnaA [Bacillus amyloliquefaciens FZB42] Length = 446 Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 162/462 (35%), Positives = 267/462 (57%), Gaps = 34/462 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL I E Sbjct: 13 AQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYE---- 68 Query: 104 IQGVEILVRSVALP---SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + G E+ V+ V +P E P + K + K+ S S L+ Sbjct: 69 LTGEELSVKFV-IPQNQDEENFLPKPQVKKAA--------------KEEPSDFPQSMLNP 113 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + Sbjct: 114 KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYV 168 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q E Sbjct: 169 IDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEE 228 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 229 FFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 288 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLS 398 L+I EV++++A + ++ REL+GA ++V S + A++A E L Sbjct: 289 AKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALK 343 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYLS+ MT S P Sbjct: 344 DIIPSSKPKVITIKEIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSREMTDSSLP 403 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV+HA K+ K+L D L+++V+ +K L+ Sbjct: 404 KIGEEFGGRDHTTVIHAHEKISKLLIDDEQLQQQVKEIKELL 445 >gi|225862058|ref|YP_002747436.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB102] gi|254777885|sp|C1ES08|DNAA_BACC3 RecName: Full=Chromosomal replication initiator protein DnaA gi|225789460|gb|ACO29677.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB102] Length = 446 Score = 286 bits (732), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 265/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEEI-DLPPSKPNAAQDDSNHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|118475779|ref|YP_892930.1| chromosomal replication initiation protein [Bacillus thuringiensis str. Al Hakam] gi|118415004|gb|ABK83423.1| chromosomal replication initiator protein [Bacillus thuringiensis str. Al Hakam] Length = 465 Score = 286 bits (731), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 265/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 22 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 81 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P N ++ Q++ Sbjct: 82 SETLYD----LTGAKLAIRFI----IPQSQAEEEI-DLPPAKPNAAQDDSNHLPQSM--- 129 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 130 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 180 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 181 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 240 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 241 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 300 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 301 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 355 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 356 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 415 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 416 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 458 >gi|23097456|ref|NP_690922.1| chromosomal replication initiation protein [Oceanobacillus iheyensis HTE831] gi|38257607|sp|Q8EU88|DNAA_OCEIH RecName: Full=Chromosomal replication initiator protein DnaA gi|22775679|dbj|BAC11957.1| chromosomal replication initiation protein [Oceanobacillus iheyensis HTE831] Length = 447 Score = 286 bits (731), Expect = 8e-75, Method: Compositional matrix adjust. Identities = 161/466 (34%), Positives = 268/466 (57%), Gaps = 29/466 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N E +++ +++ ++ + +W + K ++ + + +S P F + W++N+Y I Sbjct: 3 NIEELWSATLKKIEEKLSKPSFDTWLKNTKAEALEKDTLIISAPNEFARDWLENQYTNLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +++ E + G E+ + + S+E+ + K +T+ SP Sbjct: 63 SQMLLE----VTGSELNTKFIIPDSLEEIEEQKPMPKPKQ-STDTGDSP----------- 106 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+S++ F TF+ G+ NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 107 -KSMLNSKYTFDTFVIGAGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 160 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + PN +VVYLT+E F F +AI DN + + ++ RNID+LLIDD+QF+ G Sbjct: 161 HAIGHYVRDHNPNAKVVYLTSEKFTNEFINAIMDNKSNHFRNKYRNIDVLLIDDIQFIAG 220 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L +KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 221 KESTQEEFFHTFNALHGESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 280 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL N+ A ++ L+I EV++++A + T+ REL+GA ++V S + A Sbjct: 281 IAIL-NKKAKAEG----LDIPNEVMLYIANQINTNIRELEGALIRVVAYSSLVNQDIDAS 335 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L ++ + + K++ I IQ +VA+ Y+I D + +R +++ PRQ+AMYLS+ Sbjct: 336 LAADALKDIIPSSKPKEITIPAIQEIVAERYHIRLEDFAAKKRTKSIAFPRQIAMYLSRE 395 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +T S P+IG FG RDHTTV+HA K+ KMLE D L +++E LK Sbjct: 396 LTDASLPKIGEEFGGRDHTTVIHAHEKISKMLEQDTELDRDIEELK 441 >gi|42779082|ref|NP_976329.1| chromosomal replication initiation protein [Bacillus cereus ATCC 10987] gi|206975777|ref|ZP_03236688.1| chromosomal replication initiator protein DnaA [Bacillus cereus H3081.97] gi|217957582|ref|YP_002336124.1| chromosomal replication initiation protein [Bacillus cereus AH187] gi|222093775|ref|YP_002527822.1| chromosomal replication initiation protein [Bacillus cereus Q1] gi|229142238|ref|ZP_04270762.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST26] gi|229199687|ref|ZP_04326330.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1293] gi|61212644|sp|Q73FK5|DNAA_BACC1 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735777|sp|B7HPR7|DNAA_BACC7 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777886|sp|B9IYG8|DNAA_BACCQ RecName: Full=Chromosomal replication initiator protein DnaA gi|42734997|gb|AAS38937.1| chromosomal replication initiator protein DnaA [Bacillus cereus ATCC 10987] gi|206745871|gb|EDZ57267.1| chromosomal replication initiator protein DnaA [Bacillus cereus H3081.97] gi|217064344|gb|ACJ78594.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH187] gi|221237820|gb|ACM10530.1| chromosomal replication initiator protein DnaA [Bacillus cereus Q1] gi|228583782|gb|EEK41957.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1293] gi|228641256|gb|EEK97563.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST26] gi|324323995|gb|ADY19255.1| chromosomal replication initiation protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 446 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 265/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEEI-DLPPSKPNSAQDDSNHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|228988718|ref|ZP_04148803.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229159050|ref|ZP_04287106.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 4342] gi|228624469|gb|EEK81240.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 4342] gi|228771030|gb|EEM19511.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 446 Score = 285 bits (730), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 265/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEEI-DLPPSKPNSAQDDSNHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|229035147|ref|ZP_04189093.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1271] gi|228728213|gb|EEL79243.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1271] Length = 446 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 264/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P N + Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEEI-DLPPSKPNSAHDDSNHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y I D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQIKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|138893680|ref|YP_001124133.1| chromosomal replication initiation protein [Geobacillus thermodenitrificans NG80-2] gi|166201885|sp|A4IJ84|DNAA_GEOTN RecName: Full=Chromosomal replication initiator protein DnaA gi|134265193|gb|ABO65388.1| DnaA [Geobacillus thermodenitrificans NG80-2] Length = 450 Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 166/473 (35%), Positives = 269/473 (56%), Gaps = 32/473 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ V ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 3 NIHDLWDRVLGEIERKISKPSFETWLKSTKAHSLRGDTLVIVAPNEFARDWLDSRY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPS-VEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + L E I G E+ V+ + P+ ++ PS K + P + + Sbjct: 59 SHLIAETIYAITGEELAVKFIIPPNQADEKLELPSSAKKQ-------RKPY----EEAND 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 108 FPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 162 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QFL Sbjct: 163 MHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQFLA 222 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 223 GKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 282 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R +IL+ + +I EV++++A + ++ REL+GA ++V S +TA Sbjct: 283 RIAILRKKAKAE-----GFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEITA 337 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L ++ + + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYLS+ Sbjct: 338 DLAAEALKDIIPSAKPKVITIQDIQRVVGQHFNIKLEDFKAKKRTKSVAFPRQIAMYLSR 397 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV----ELLKRL 499 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K + E LK+L Sbjct: 398 ELTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDTQLQKHLKEIQEKLKQL 450 >gi|222475026|ref|YP_002563441.1| chromosomal replication initiator protein (dnaA) [Anaplasma marginale str. Florida] gi|254994872|ref|ZP_05277062.1| chromosomal replication initiation protein [Anaplasma marginale str. Mississippi] gi|255003006|ref|ZP_05277970.1| chromosomal replication initiation protein [Anaplasma marginale str. Puerto Rico] gi|255004132|ref|ZP_05278933.1| chromosomal replication initiation protein [Anaplasma marginale str. Virginia] gi|222419162|gb|ACM49185.1| chromosomal replication initiator protein (dnaA) [Anaplasma marginale str. Florida] Length = 471 Score = 285 bits (729), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 177/492 (35%), Positives = 283/492 (57%), Gaps = 29/492 (5%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL 74 V+++E T V KR + ++ + V +L++ G +Y SW L + + V L Sbjct: 2 VDVSETTERCVVHKRQGQDGGDAAWRGVQKKLRDFYGSAIYDSWLSALVYSGNENGRVVL 61 Query: 75 SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 VPT F+K WI YLE I K +Q+E + V+I V S + + A P Sbjct: 62 LVPTRFIKEWILVHYLERILKYWQDESDAVYSVDICV-SDGVGVQPQMAEHP-------- 112 Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + + P+++ T + SPLD RF F F+ G N +A AA+ +AE + Sbjct: 113 DGAVDGPPVVMVGGTYDHL-SSPLDPRFTFDNFVVGKPNELAFAAARRVAESSA---PIP 168 Query: 195 RLNPLFIHASVGLGKTHLLQAIA----NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 NPLF++ VGLGKTHL+ AIA N+S+KR ++ YL+AE FM+++ +A+R Sbjct: 169 GSNPLFLYGGVGLGKTHLMHAIAWYILNSSVKR----KIAYLSAEKFMYQYVTALRSKDI 224 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + K+ R++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ Sbjct: 225 MLFKEQFRSVDILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVE 284 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 RI+SRL G+ + +E+R IL+ ++ E +++ EVL +A+ + ++ R Sbjct: 285 DRIKSRLGWGLVADINETTFELRLGILQLKI-----EKMGVHVPNEVLEFLAKNIKSNIR 339 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA N++V S +T E A +LS L+ + + + IQ+ VA+ + I D Sbjct: 340 ELEGALNKVVAHSSLVGSSVTIESASGILSDLLRANH-RMVTVGMIQKKVAEFFGIKLED 398 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + S RR+R + RPRQVAMYL+K +T +S P+IG+ FG RDH TV+HAV+++EK +E D Sbjct: 399 MYSARRLRALARPRQVAMYLAKRLTQKSLPDIGKSFGGRDHATVIHAVKQIEKFMEDDAK 458 Query: 489 LKKEVELLKRLI 500 L ++ LL R++ Sbjct: 459 LADDINLLIRML 470 >gi|308171892|ref|YP_003918597.1| chromosomal replication initiator protein DnaA [Bacillus amyloliquefaciens DSM 7] gi|307604756|emb|CBI41127.1| chromosomal replication initiator protein DnaA [Bacillus amyloliquefaciens DSM 7] gi|328909960|gb|AEB61556.1| chromosomal replication initiator protein DnaA [Bacillus amyloliquefaciens LL3] Length = 446 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 161/459 (35%), Positives = 265/459 (57%), Gaps = 34/459 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL I E Sbjct: 13 AQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYE---- 68 Query: 104 IQGVEILVRSVALP---SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + G E+ V+ V +P E P + K + K+ S S L+ Sbjct: 69 LTGEELSVKFV-IPQNQDEENFMPKPQVKKAA--------------KEEPSDFPQSMLNP 113 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + Sbjct: 114 KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYV 168 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q E Sbjct: 169 IDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEE 228 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 229 FFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 288 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLS 398 L+I EV++++A + ++ REL+GA ++V S + A++A E L Sbjct: 289 AKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALK 343 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYLS+ MT S P Sbjct: 344 DIIPSSKPKVITIKEIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSREMTDSSLP 403 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +IG FG RDHTTV+HA K+ K+L D L+++V+ +K Sbjct: 404 KIGEEFGGRDHTTVIHAHEKISKLLIDDEQLQQQVKEIK 442 >gi|222150251|ref|YP_002559404.1| chromosomal replication initiation protein DnaA [Macrococcus caseolyticus JCSC5402] gi|254777906|sp|B9E8Z7|DNAA_MACCJ RecName: Full=Chromosomal replication initiator protein DnaA gi|222119373|dbj|BAH16708.1| chromosomal replication initiation protein DnaA [Macrococcus caseolyticus JCSC5402] Length = 445 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 157/474 (33%), Positives = 272/474 (57%), Gaps = 40/474 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I+ V + +K+++ P Y +WF+ K + ++ V + PT+F+ W++ Y++ I Sbjct: 4 IDTIWEKVLANIKHRLAPASYDTWFKETKIKVLNNHQVVIQAPTSFISEWLQTNYIDFIQ 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + F EE ++++ L + EK A P+ +QT + Sbjct: 64 EAFIEEIGEKLNIKVISSEDELMNNEKEA------------------PVRKTQQTSQELL 105 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L++ F TF+ GS NR + A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 106 PNQLNTDNTFDTFVIGSGNRFSHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMH 160 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ + N +VVY+++E FM F ++I+DN + RN+D+LLIDD+QFL GK Sbjct: 161 AIGHYVMEHKENAKVVYISSEKFMNEFINSIKDNKTEEFRSKYRNVDVLLIDDIQFLAGK 220 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N L + KQ+V ++DR P E+ +L+ R+R+R + G+ + D E R Sbjct: 221 ESTQEEFFHTFNELHQNHKQIVISSDRAPKEIPTLEERLRTRFEWGLITDVTPPDLETRI 280 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA------FNQLVFRHSFAPI 387 +IL+ + E+ ++I E ++++A + ++ REL+GA +++LV R Sbjct: 281 AILRKK-----SEEENIDIPNEAMLYIATQIQSNIRELEGALTRVSAYSKLVNRE----- 330 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 L +++ E L ++ T + KK+ I+DIQ V ++YN+ D + +R +++ PRQ+AMY Sbjct: 331 LNSDLVAEALKDIIATSKPKKVTIKDIQLAVGEYYNVRLEDFSAKKRTKSIAFPRQIAMY 390 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T S P+IG FG RDHTTV+HA K++ LETD +LK E++ +++ I+ Sbjct: 391 LARELTDFSLPKIGEEFGGRDHTTVIHAHEKIKNQLETDESLKNELKNIEKDIT 444 >gi|16077069|ref|NP_387882.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. 168] gi|221307810|ref|ZP_03589657.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. 168] gi|221312132|ref|ZP_03593937.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317065|ref|ZP_03598359.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221321328|ref|ZP_03602622.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321313668|ref|YP_004205955.1| chromosomal replication initiation protein [Bacillus subtilis BSn5] gi|118704|sp|P05648|DNAA_BACSU RecName: Full=Chromosomal replication initiator protein DnaA gi|40014|emb|CAA26217.1| unnamed protein product [Bacillus subtilis] gi|467391|dbj|BAA05237.1| initiation protein of replicaton [Bacillus subtilis] gi|2632268|emb|CAB11777.1| chromosomal replication initiator protein DnaA [Bacillus subtilis subsp. subtilis str. 168] gi|291482370|dbj|BAI83445.1| chromosomal replication initiation protein [Bacillus subtilis subsp. natto BEST195] gi|320019942|gb|ADV94928.1| chromosomal replication initiation protein [Bacillus subtilis BSn5] Length = 446 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 264/459 (57%), Gaps = 34/459 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL I E Sbjct: 13 AQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYE---- 68 Query: 104 IQGVEILVRSVALP---SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + G E+ ++ V +P VE P + K K+ S + L+ Sbjct: 69 LTGEELSIKFV-IPQNQDVEDFMPKPQVKKAV--------------KEDTSDFPQNMLNP 113 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + Sbjct: 114 KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYV 168 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q E Sbjct: 169 IDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEE 228 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 229 FFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 288 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLS 398 L+I EV++++A + ++ REL+GA ++V S + A++A E L Sbjct: 289 AKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALK 343 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYLS+ MT S P Sbjct: 344 DIIPSSKPKVITIKEIQRVVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSREMTDSSLP 403 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +IG FG RDHTTV+HA K+ K+L D L++ V+ +K Sbjct: 404 KIGEEFGGRDHTTVIHAHEKISKLLADDEQLQQHVKEIK 442 >gi|296330037|ref|ZP_06872521.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672699|ref|YP_003864370.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296153076|gb|EFG93941.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410942|gb|ADM36060.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 446 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 264/459 (57%), Gaps = 34/459 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL I E Sbjct: 13 AQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYE---- 68 Query: 104 IQGVEILVRSVALP---SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + G E+ ++ V +P VE P + K K+ S + L+ Sbjct: 69 LTGEELSIKFV-IPQNQDVEDFMPKPQVKKAV--------------KEDTSDFPQNMLNP 113 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + Sbjct: 114 KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYV 168 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q E Sbjct: 169 IDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEE 228 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 229 FFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 288 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLS 398 L+I EV++++A + ++ REL+GA ++V S + A++A E L Sbjct: 289 AKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALK 343 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYLS+ MT S P Sbjct: 344 DIIPSSKPKVITIKEIQRVVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSREMTDSSLP 403 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +IG FG RDHTTV+HA K+ K+L D L++ V+ +K Sbjct: 404 KIGEEFGGRDHTTVIHAHEKISKLLAEDEQLQQHVKEIK 442 >gi|328551701|gb|AEB22193.1| chromosomal replication initiation protein [Bacillus amyloliquefaciens TA208] Length = 446 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/459 (35%), Positives = 265/459 (57%), Gaps = 34/459 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL I E Sbjct: 13 AQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYLHLIADTIYE---- 68 Query: 104 IQGVEILVRSVALP---SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + G E+ V+ V +P E P + K + K+ S S L+ Sbjct: 69 LTGEELSVKFV-IPQNQDEENFMPKPQVEKAA--------------KEEPSDFPQSMLNP 113 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + Sbjct: 114 KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYV 168 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q E Sbjct: 169 IDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEE 228 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 229 FFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 288 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLS 398 L+I EV++++A + ++ REL+GA ++V S + A++A E L Sbjct: 289 AKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALK 343 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYLS+ MT S P Sbjct: 344 DIIPSSKPKVITIKEIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSREMTDSSLP 403 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +IG FG RDHTTV+HA K+ K+L D L+++V+ +K Sbjct: 404 KIGEEFGGRDHTTVIHAHEKISKLLIDDEQLQQQVKEIK 442 >gi|261417501|ref|YP_003251183.1| chromosomal replication initiation protein [Geobacillus sp. Y412MC61] gi|319765158|ref|YP_004130659.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y412MC52] gi|261373958|gb|ACX76701.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y412MC61] gi|317110024|gb|ADU92516.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y412MC52] Length = 450 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 163/472 (34%), Positives = 267/472 (56%), Gaps = 30/472 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ V + ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 3 NIHDLWDHVLAEIEQKISKPSFETWLKSTKAHSLRGDTLVIVAPNEFARDWLDSRY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + L E I G E+ V+ + P+ + + SK + + Sbjct: 59 SHLIAETIYTITGEELAVKFIIPPNQDDEE----------LEFQSSKKKQRKPYEETNDF 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 109 PQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QFL G Sbjct: 164 HAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQFLAG 223 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 224 KEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + +I EV++++A + ++ REL+GA ++V S +TA+ Sbjct: 284 IAILRKKAKAE-----GFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEITAD 338 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYLS+ Sbjct: 339 LAAEALKDIIPSAKPKVITIQDIQRVVGQHFNIKMEDFKAKKRTKSVAFPRQIAMYLSRE 398 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV----ELLKRL 499 +T S P+IG FG RDHTTV+HA K+ K+L+TD L++ + E LK+L Sbjct: 399 LTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDTQLQRHIQEIQEKLKQL 450 >gi|56418536|ref|YP_145854.1| chromosomal replication initiation protein [Geobacillus kaustophilus HTA426] gi|297528377|ref|YP_003669652.1| chromosomal replication initiator protein DnaA [Geobacillus sp. C56-T3] gi|61212478|sp|Q5L3Z2|DNAA_GEOKA RecName: Full=Chromosomal replication initiator protein DnaA gi|56378378|dbj|BAD74286.1| chromosome replication initiator protein [Geobacillus kaustophilus HTA426] gi|297251629|gb|ADI25075.1| chromosomal replication initiator protein DnaA [Geobacillus sp. C56-T3] Length = 450 Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 159/463 (34%), Positives = 263/463 (56%), Gaps = 26/463 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ V + ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 3 NIHDLWDRVLAEIEQKISKPSFETWLKSTKAHSLRGDTLVIVAPNEFARDWLDSRY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + L E I G E+ V+ + P+ + + SK + + Sbjct: 59 SHLIAETIYTITGEELAVKFIIPPNQDDEE----------LEFQSSKKKQRKPYEETNDF 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 109 PQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QFL G Sbjct: 164 HAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQFLAG 223 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 224 KEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + +I EV++++A + ++ REL+GA ++V S +TA+ Sbjct: 284 IAILRKKAKAE-----GFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEITAD 338 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYLS+ Sbjct: 339 LAAEALKDIIPSAKPKVITIQDIQRVVGQHFNIKMEDFKAKKRTKSVAFPRQIAMYLSRE 398 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L++ ++ Sbjct: 399 LTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDTQLQRHIQ 441 >gi|229164440|ref|ZP_04292368.1| Chromosomal replication initiator protein dnaA [Bacillus cereus R309803] gi|228619045|gb|EEK75943.1| Chromosomal replication initiator protein dnaA [Bacillus cereus R309803] Length = 446 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 157/463 (33%), Positives = 264/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I P N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEEI-DFPPSKPNAAQDDSNHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 439 >gi|56416662|ref|YP_153736.1| chromosomal replication initiation protein [Anaplasma marginale str. St. Maries] gi|71151791|sp|Q5PB48|DNAA_ANAMM RecName: Full=Chromosomal replication initiator protein DnaA gi|56387894|gb|AAV86481.1| chromosomal replication initiator protein [Anaplasma marginale str. St. Maries] Length = 471 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 177/492 (35%), Positives = 283/492 (57%), Gaps = 29/492 (5%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL 74 V+++E T V KR + ++ + V +L++ G +Y SW L + + V L Sbjct: 2 VDVSETTERCVVHKRQGQDGGDAAWRGVQKKLRDFYGSAIYDSWLSALVYSGNENGRVVL 61 Query: 75 SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 VPT F+K WI YLE I K +Q+E + V+I V S + + A P Sbjct: 62 LVPTRFIKEWILVHYLERILKYWQDESDAVYSVDICV-SDGVGVQPQMAEHP-------- 112 Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + + P+++ T + SPLD RF F F+ G N +A AA+ +AE + Sbjct: 113 DGAVDGPPVVMVGGTYDHL-SSPLDPRFTFDNFVVGKPNELAFAAARRVAESSA---PIP 168 Query: 195 RLNPLFIHASVGLGKTHLLQAIA----NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 NPLF++ VGLGKTHL+ AIA N+S+KR ++ YL+AE FM+++ +A+R Sbjct: 169 GSNPLFLYGGVGLGKTHLMHAIAWYILNSSVKR----KIAYLSAEKFMYQYVTALRSKDI 224 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + K+ R++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ Sbjct: 225 MLFKEQFRSVDILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVE 284 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 RI+SRL G+ + +E+R IL+ ++ E +++ EVL +A+ + ++ R Sbjct: 285 DRIKSRLGWGLVADINETTFELRLGILQLKI-----EKMGVHVPNEVLEFLAKNIKSNIR 339 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA N++V S +T E A +LS L+ + + + IQ+ VA+ + I D Sbjct: 340 ELEGALNKVVAHSSLVGRSVTIESASGILSDLLRANH-RMVTVGMIQKKVAEFFGIKLED 398 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + S RR+R + RPRQVAMYL+K +T +S P+IG+ FG RDH TV+HAV+++EK +E D Sbjct: 399 MYSARRLRALARPRQVAMYLAKRLTQKSLPDIGKSFGGRDHATVIHAVKQIEKFMEDDAK 458 Query: 489 LKKEVELLKRLI 500 L ++ LL R++ Sbjct: 459 LADDINLLIRML 470 >gi|152973855|ref|YP_001373372.1| chromosomal replication initiation protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189044630|sp|A7GJR9|DNAA_BACCN RecName: Full=Chromosomal replication initiator protein DnaA gi|152022607|gb|ABS20377.1| chromosomal replication initiator protein DnaA [Bacillus cytotoxicus NVH 391-98] Length = 446 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 158/463 (34%), Positives = 260/463 (56%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ + L+ +V Y +W + K H++ + + + P F + W+++ Y E I Sbjct: 3 NIADLWNSALTELEKKVSKPSYETWLKSTKAHALKKDTLTIIAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + I G ++ +R + S + K +N + P Sbjct: 63 SETIYD----ITGAKLNIRFIIPQSQTEEEVDYPPAKAKKMNDESNHLP----------- 107 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 108 -QSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKKAKAE-----GLDIPNEVMIYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ ++L+TD L+K++E Sbjct: 397 LTDSSLPKIGEEFGGRDHTTVIHAHEKISRLLKTDTQLQKQIE 439 >gi|299541765|ref|ZP_07052088.1| chromosomal replication initiation protein [Lysinibacillus fusiformis ZC1] gi|298725503|gb|EFI66144.1| chromosomal replication initiation protein [Lysinibacillus fusiformis ZC1] Length = 449 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 272/477 (57%), Gaps = 38/477 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + E ++ V ++++ ++ + +W + K ++ + V ++ P +F + W++N Y+ Sbjct: 3 HLEELWNNVLAQVEQKISKPSFETWLKSTKLLSYNGSGSTVTIAAPNSFARDWLENHYIH 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT-- 149 IT + E + G ++L++ V V+K S +PII K Sbjct: 63 LITGILTE----LTGEDLLIKFV----VQKNQDSDDFD---------LPAPIIQAKNNEH 105 Query: 150 --ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 ISP +P ++ F TF+ GS NR A A+ ++AE + Y NP FI+ VGL Sbjct: 106 HDISPGMLNP---KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPFFIYGGVGL 157 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI + ++ PN +VVYL++E F F ++IRDN AL+ ++ RN+D+LLIDD Sbjct: 158 GKTHLMHAIGHYVLEHNPNAKVVYLSSEKFTNEFINSIRDNKALDFRNKYRNVDVLLIDD 217 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFL GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 218 IQFLAGKESTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAP 277 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA- 385 D E R +IL+ + E P EV++++A + ++ REL+GA ++V S Sbjct: 278 PDLETRIAILRKKAKADGLEVPN-----EVMLYIANQIDSNIRELEGALIRVVAYSSLVN 332 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +TA +A E L ++ + + + I DIQ V +H++I D + +R + + PRQ+A Sbjct: 333 KDITATLAAEALKDIIPNSKPRTVTILDIQNAVGEHFSIRLEDFAAKKRTKLIAFPRQIA 392 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYLS+ +T S P+IG FG RDHTTV+HA K+ ML+ D+ L+++V+ ++ ++ + Sbjct: 393 MYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISSMLKNDVQLQQDVKQIRSMLGK 449 >gi|311070648|ref|YP_003975571.1| chromosomal replication initiation protein [Bacillus atrophaeus 1942] gi|310871165|gb|ADP34640.1| chromosomal replication initiation protein [Bacillus atrophaeus 1942] Length = 446 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 155/445 (34%), Positives = 255/445 (57%), Gaps = 28/445 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + K H++ + + ++ P F + W+++RYL I E + G E+ ++ V Sbjct: 24 FETWMKSTKAHALQGDTLTITAPNEFARDWLESRYLHLIADTIYE----LTGEELSIKFV 79 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 + + PI + P + ++P ++ F TF+ GS NR Sbjct: 80 ----IPQNQDEEDFMPKPPIKKVAKEEPSDFPQNMLNP--------KYTFDTFVIGSGNR 127 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + I P+ +VVYL++ Sbjct: 128 FAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYVIDHNPSAKVVYLSS 182 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q EF H N+L + +KQ Sbjct: 183 EKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQ 242 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + L+I Sbjct: 243 IVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAE-----GLDIP 297 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIE 412 EV++++A + ++ REL+GA ++V S + A++A E L ++ + + K + I+ Sbjct: 298 NEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIPSSKPKVITIK 357 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQR+V + +NI D + +R ++V PRQ+AMYLS+ MT S P+IG FG RDHTTV Sbjct: 358 EIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSREMTDSSLPKIGEEFGGRDHTTV 417 Query: 473 LHAVRKVEKMLETDITLKKEVELLK 497 +HA K+ KM+ D L++ V+ +K Sbjct: 418 IHAHEKISKMMLDDEQLQQHVKEIK 442 >gi|295402123|ref|ZP_06812082.1| chromosomal replication initiator protein DnaA [Geobacillus thermoglucosidasius C56-YS93] gi|312109152|ref|YP_003987468.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y4.1MC1] gi|294975806|gb|EFG51425.1| chromosomal replication initiator protein DnaA [Geobacillus thermoglucosidasius C56-YS93] gi|311214253|gb|ADP72857.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y4.1MC1] Length = 450 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 267/472 (56%), Gaps = 30/472 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ V ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 3 NIHDLWNRVLGEIEKKISKPSFETWLKSTKAHSLRGDTLVIVAPNEFARDWLDSRY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++L E I G E+ V+ + P+ ++ + + + P + ++P Sbjct: 59 SRLIAETIYDITGEELSVKFIIPPN--QSEDDFELQQSLKKQRKSYEEPADFPQSMLNP- 115 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 116 -------KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QFL G Sbjct: 164 HAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQFLAG 223 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 224 KEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + +I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 284 IAILRKKAKAE-----GFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEINAD 338 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYLS+ Sbjct: 339 LAAEALKDIIPNSKPKVITIQDIQRVVGQHFNIKLEDFKAKKRTKSVAFPRQIAMYLSRE 398 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV----ELLKRL 499 +T S P+IG FG RDHTTV+HA K+ K+L+TD+ L+K + E LK+L Sbjct: 399 LTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDVQLQKHIKEIQEKLKQL 450 >gi|89052492|ref|YP_507943.1| chromosomal replication initiation protein [Jannaschia sp. CCS1] gi|123287123|sp|Q28WI0|DNAA_JANSC RecName: Full=Chromosomal replication initiator protein DnaA gi|88862041|gb|ABD52918.1| chromosomal replication initiator protein DnaA [Jannaschia sp. CCS1] Length = 475 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 154/466 (33%), Positives = 268/466 (57%), Gaps = 24/466 (5%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 VG + +++W + + F + H VPTNF+ +W+ N + + I + + V+ Sbjct: 17 VGKNNFSAWIEPIDFDRIDERTAHFHVPTNFIGSWVTNNFGDLILRQLSAHGAGADRVKF 76 Query: 110 LV--RSVALPSVEKTASSP--------SITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 V ++ A + S+P + +P++ + + G+ L+ Sbjct: 77 TVSPKAGAAVAAPANTSAPRPVPEMAAAAPAPAPVHHTAPAPAPVAAPAQPRELPGAKLN 136 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 F F+ F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 137 PNFTFANFVVGKPNELAHAAARRVAET-----LDVTFNPLFLYGGVGLGKTHLMHAIAWD 191 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 R P+ ++++L+AE FM RF A+R+ N K++ R++D+L++DD+QF+ GK Q Sbjct: 192 LQDRHPDAKILFLSAEQFMHRFVRALREQDTFNFKETFRSVDILMVDDVQFIAGKTSTQQ 251 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L++ KQ+V + DR P ++E LD RI SRLQ G+ V + DYE+R +L++ Sbjct: 252 EFFHTFNALVEMGKQIVISGDRAPVDMEELDNRIASRLQCGLVVDIHPTDYELRLGVLQH 311 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL----TAEIAD 394 + + + P + VL ++A+ ++++ R L+GA +L +FA ++ T ++A Sbjct: 312 KAELLGAKYPHITFATGVLEYLAQKISSNVRVLEGALTRLF---AFADLVRREVTVDLAK 368 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L+ ++ + KK+ +++I + ++Y I + D++S R R + RPRQ+AMYL K +T Sbjct: 369 ECLTDVLRATD-KKVTMDEILKKTCEYYKIRQVDMISQNRQRVIARPRQMAMYLCKRLTT 427 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RS PEIG++FG RDHTT+L+ VRK+E++++ D + ++ ELL+R + Sbjct: 428 RSLPEIGKKFGGRDHTTILYGVRKIEELMQADSQIAEDAELLRRTL 473 >gi|114568555|ref|YP_755235.1| chromosomal replication initiator protein DnaA [Maricaulis maris MCS10] gi|114339017|gb|ABI64297.1| chromosomal replication initiator protein DnaA [Maricaulis maris MCS10] Length = 482 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 162/465 (34%), Positives = 265/465 (56%), Gaps = 15/465 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +I+ V + L+ + GP +Y+ RL+ + + P+NF + W+++ + I L Sbjct: 26 AIWRRVRAHLREECGPALYSQEIARLRVRLSETGALVIIAPSNFNRDWVEDHWGARIRAL 85 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 + E + V +L P A P+ SP T ++ +P G Sbjct: 86 WAELDPSHRDVHLLAEGQDAPQPVMAARLPAAASRSPAPTGLT------ADTAQTPADGT 139 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 SP D+RF F +F G +N VA AA+++ G +T NP+F + G+GKTHLL A Sbjct: 140 SPGDARFSFDSFRVGPANEVAAAAARTMV-----GASTPPFNPVFFYGDYGVGKTHLLHA 194 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 +A+A+ + +YLTAE F+ F +A++ ++ K+++R +D+LLIDD+ F+ GK Sbjct: 195 VASAARNGSRPRKALYLTAEEFLSGFVTAMKARDTISFKETVRGVDVLLIDDVHFIAGKP 254 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 + EF H + +L+ KQVV A+ +PP+EL+ D R+RS L GG+S PLG D ++R Sbjct: 255 KTEDEFLHTIAALVAENKQVVLASHKPPAELQMQDERLRSLLTGGLSCPLGKPDLDLRRQ 314 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL ++A + P +++E V +A +T+S RE++G N ++ R + +T E+ Sbjct: 315 ILDCKIAQATCHYPTFDVSEAVRDFLAARITSSPREMEGVLNNVICRTALIGQPVTMEVV 374 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L L + E +++ +++IQ++VA H+ IS D+ S RR + VVRPR +AMYL+K +T Sbjct: 375 STALRELSLSSE-RRLTVDEIQKVVATHFGISTADICSKRRTQAVVRPRHIAMYLAKTLT 433 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RS P+IGRRFG RDH+TV+HAV KV M++ ++ E++ L R Sbjct: 434 TRSLPDIGRRFGGRDHSTVIHAVSKVTGMIDAGDSVADEIDALTR 478 >gi|262277742|ref|ZP_06055535.1| chromosomal replication initiator protein DnaA [alpha proteobacterium HIMB114] gi|262224845|gb|EEY75304.1| chromosomal replication initiator protein DnaA [alpha proteobacterium HIMB114] Length = 462 Score = 284 bits (726), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 165/465 (35%), Positives = 264/465 (56%), Gaps = 37/465 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + IV +LK G DVY SW Q ++ + + + L V T F++ WI + Y + I +Q Sbjct: 17 WEIVQQKLKETYGLDVYKSWIQNVEAKGIDFSSLILVVKTRFVRDWIVSHYADKILDHYQ 76 Query: 99 EEHSRIQGVEILVRSV----ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + + ++ + + ++ S I L N I++ Sbjct: 77 KLDNSVSRIQFEINEIFDEKRSTNILDFGSGTKIIDLKDTNYGINR-------------- 122 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 +D R F +F+ G SN++A +AA+ + E H NPL+I+ VGLGKTH+L Sbjct: 123 ---IDPRLNFESFVTGESNQLAFSAAKRVTESLGH------YNPLYIYGGVGLGKTHILN 173 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N +Q + +V+YL+AE FM++F +I++ K+ RN D+L++DD+QF+ GK Sbjct: 174 AIGNQL--KQMDKKVIYLSAERFMYQFVKSIKNKDTHKFKEIFRNADVLILDDIQFISGK 231 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 + Q EF + NSLL++ QVV + DR P+EL+ + RI+SRL GG+ V + D +R Sbjct: 232 EVTQEEFFYTFNSLLENQSQVVISCDRSPNELDRIQDRIKSRLSGGLVVDVQPPDIGLRL 291 Query: 334 SILKNR-LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR---HSFAPILT 389 ILK R LA ++ IN+E+L ++ +S R++ G N+++ + P T Sbjct: 292 EILKKRCLAEKNHFGNEILINDEILSFISNEFKSSVRDMLGVLNRVIASARIQNKTP--T 349 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + A +L L+N ++ + IEDIQ++V +YN+S ND LS RR R + RPRQ+AMYLS Sbjct: 350 LQDAKLILKDLLNNMQSV-ISIEDIQKIVVAYYNLSMNDFLSARRSRHIARPRQIAMYLS 408 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 K +T +S PEIGR+F RDHTTV+HA++K+E+++ D + EV+ Sbjct: 409 KKLTTKSLPEIGRKFTGRDHTTVIHAIKKIEELMSKDRQFEHEVQ 453 >gi|229917455|ref|YP_002886101.1| chromosomal replication initiator protein DnaA [Exiguobacterium sp. AT1b] gi|259645250|sp|C4KZZ3|DNAA_EXISA RecName: Full=Chromosomal replication initiator protein DnaA gi|229468884|gb|ACQ70656.1| chromosomal replication initiator protein DnaA [Exiguobacterium sp. AT1b] Length = 459 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 155/449 (34%), Positives = 260/449 (57%), Gaps = 24/449 (5%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 W + + S++ + +S P +F+ W++ +YL L Q+ I ++ + + Sbjct: 29 WLKSTEGISLMGTTLVVSAPASFIVTWLERQYL----SLLQDTVEEITNNKLEIHFIEES 84 Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 K A + + S T + P++L + + L+ +++F TF+ GS NR A Sbjct: 85 QAHKYAPADGSSNESIAVTETKEQPVLLPSKEEGDL--GQLNDKYIFETFVIGSGNRFAH 142 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++P R+ Y+++E F Sbjct: 143 AASLAVAEAPARAY-----NPLFIYGGVGLGKTHLMHAIGHYVKGQKPGARIAYVSSEKF 197 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 F ++IRDN ++ RNID+LLIDD+QFL GK Q EF H N+L + KQ+V Sbjct: 198 TNEFINSIRDNKTGEFRNRYRNIDVLLIDDIQFLAGKEQTQEEFFHTFNALHNDQKQIVI 257 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + L+I+ EV Sbjct: 258 SSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKATAE-----GLDISNEV 312 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIE 412 ++++A + T+ REL+GA ++V ++A + + ++A E L +++ E KK+ I Sbjct: 313 MLYIANQIDTNIRELEGALTRVV---AYAKLVGRPIDPDVAAEALHNIMPVQEAKKIVIR 369 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 DIQ +V +H+NI +L S +R +T+ PRQ+AMYLS+ MT S P+IG FG RDHTTV Sbjct: 370 DIQEVVGQHFNIQVEELNSKKRTKTLAFPRQIAMYLSREMTESSLPKIGEEFGGRDHTTV 429 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 +HA K+ +L+ D+ +++ ++ LK+ +S Sbjct: 430 IHAHEKISTLLKNDVEMQETIQTLKKALS 458 >gi|229015406|ref|ZP_04172412.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1273] gi|229026930|ref|ZP_04183253.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1272] gi|228734388|gb|EEL85059.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1272] gi|228745885|gb|EEL95881.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1273] Length = 446 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 158/464 (34%), Positives = 263/464 (56%), Gaps = 30/464 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKDLEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTN-ISKSPIILGKQTISP 152 ++ + + G ++ +R + + ++ + I L PI N + L + ++P Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEDI-DLPPIKKNRVQDDSTHLPQSMLNP 113 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 114 --------KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 160 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL Sbjct: 161 MHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLA 220 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 221 GKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 280 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + L+I EV++++A + ++ REL+GA ++V S + A Sbjct: 281 RIAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINA 335 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L ++ + + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 336 DLAAEALKGIIPNSIPRIISISDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYLSR 395 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K VE Sbjct: 396 ELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKHVE 439 >gi|163938014|ref|YP_001642898.1| chromosomal replication initiation protein [Bacillus weihenstephanensis KBAB4] gi|229014656|ref|ZP_04171770.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides DSM 2048] gi|229065149|ref|ZP_04200442.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH603] gi|229136315|ref|ZP_04265062.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST196] gi|229170193|ref|ZP_04297879.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH621] gi|226735778|sp|A9VM90|DNAA_BACWK RecName: Full=Chromosomal replication initiator protein DnaA gi|23193191|gb|AAN14420.1|AF319579_1 DnaA [Bacillus weihenstephanensis] gi|163860211|gb|ABY41270.1| chromosomal replication initiator protein DnaA [Bacillus weihenstephanensis KBAB4] gi|228613294|gb|EEK70433.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH621] gi|228647187|gb|EEL03275.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST196] gi|228716178|gb|EEL67897.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH603] gi|228746667|gb|EEL96556.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides DSM 2048] Length = 446 Score = 283 bits (724), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 158/470 (33%), Positives = 267/470 (56%), Gaps = 30/470 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPS-VEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 ++ + + G ++ +R + S E+ PS+ + + + + Sbjct: 63 SETLYD----LTGAKLAIRFIIPQSQAEEDIDLPSVKQKHAHDES-------------NH 105 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 106 LPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 160 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL Sbjct: 161 MHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLA 220 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 221 GKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 280 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + L+I EV++++A + ++ REL+GA ++V S + A Sbjct: 281 RIAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDMNA 335 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L +++ + + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 336 DLAAEALKNIIPNSIPRIISISDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYLSR 395 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K VE +K ++ Sbjct: 396 ELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKHVEEVKDIL 445 >gi|229542315|ref|ZP_04431375.1| chromosomal replication initiator protein DnaA [Bacillus coagulans 36D1] gi|229326735|gb|EEN92410.1| chromosomal replication initiator protein DnaA [Bacillus coagulans 36D1] Length = 449 Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 271/472 (57%), Gaps = 33/472 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ S ++ ++ + +W + K +S+ ++ +SVP F + W++ Y+ I Sbjct: 3 NIADLWEKALSVIEKKISKPSFDTWLKSTKAYSLKNDTFVISVPNEFARDWLEGHYIPLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSI---TKLSPINTNISKSPIILGKQTI 150 T + + I G E+ ++ V +P ++ + P + K S N ++ Sbjct: 63 TTVLYD----ITGEELEIKFV-IPQ-QQDSDEPELFPSPKKSAEKLNDTRD--------- 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 108 ---YQSMLIPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +VVYL++E F F ++IRDN ++ RN+D+LLIDD+QF Sbjct: 160 HLMHAIGHYVLEHNPKAKVVYLSSEKFTNEFINSIRDNKGGEFRNKYRNVDILLIDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 220 LAGKESTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEERLRSRFEWGLITDITPPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + K D L+I EV++++A + T+ REL+GA ++V S + Sbjct: 280 ETRIAILRKK----AKAD-GLDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINKDI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + IEDIQ++V + Y++ D + +R ++V PRQ+AMYL Sbjct: 335 NADLAAEALKDIIPSAKPKTITIEDIQKVVGEEYHVKMEDFKAKKRTKSVAFPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ +T S P+IG FG RDHTTV+HA K+ +++TD +K++E L+ L+ Sbjct: 395 SRELTDFSLPKIGEEFGGRDHTTVIHAHEKIANLIQTDAQFQKKIEELQNLL 446 >gi|167629172|ref|YP_001679671.1| chromosomal replication initiator protein dnaa [Heliobacterium modesticaldum Ice1] gi|226735814|sp|B0TAK8|DNAA_HELMI RecName: Full=Chromosomal replication initiator protein DnaA gi|167591912|gb|ABZ83660.1| chromosomal replication initiator protein dnaa [Heliobacterium modesticaldum Ice1] Length = 443 Score = 283 bits (723), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 165/457 (36%), Positives = 264/457 (57%), Gaps = 34/457 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LK ++ P + +W + + ++ + H+ VP + + W++NRY L + S + Sbjct: 16 LKQELKPASFDTWLKNTQLVTIQNGEAHIGVPNDLARDWLENRY----ATLVKNALSVVL 71 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 G + VR PS + S PS P+ T S P+ L+ ++ F Sbjct: 72 GESVEVRFFT-PSADSRRSEPS---RRPVATEESSPPL--------------LNPKYTFD 113 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SNR A AA ++AE + Y NPLF++ VGLGKTHL+QAI + I++ P Sbjct: 114 TFVVGNSNRFAHAAALAVAEAPAKAY-----NPLFVYGGVGLGKTHLMQAIGHFVIEQHP 168 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 RVVY+++E F +AIRD+ + ++ RNID+LLIDD+QFL GK Q EF H Sbjct: 169 QSRVVYVSSEKFTNELINAIRDDKTVEFRNRYRNIDVLLIDDIQFLAGKERTQEEFFHTF 228 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L +S+KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + + Sbjct: 229 NALHESSKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDINPPDLETRIAILRKKAILEN 288 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNT 403 L++ EV++ +A + ++ REL+GA N+++ + + LT+E+A+E L +++ + Sbjct: 289 -----LDVPNEVMVFIANIIQSNIRELEGALNRVIAYANLSGKSLTSEVAEEALKNIIPS 343 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 K + I IQ +VA+HYN+ D + +R R V PRQ+AMYLS+ M S P+IG Sbjct: 344 HRAKVITIALIQEIVAEHYNMRVEDFKAKKRTRDVAFPRQIAMYLSREMLDVSLPKIGEE 403 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG RDHTTV+HA K+ K +E D L+ +++LK I Sbjct: 404 FGGRDHTTVIHAHEKITKDIEKDPQLEMTIQVLKEKI 440 >gi|311032256|ref|ZP_07710346.1| chromosomal replication initiation protein [Bacillus sp. m3-13] Length = 448 Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 264/463 (57%), Gaps = 27/463 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ ++++ ++ + +W + K HS+ + + ++ P F + W+++RY Sbjct: 3 NISDLWVKALNQIEKKISKPSFETWLKSTKAHSLQGDNLVITAPNEFARDWLESRY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + L E S I G E+ ++ + +P + A K P I + + ++P Sbjct: 59 SGLIGETISDITGEELSIKFI-IP--QNQADEEIEIKTPPAKVKKDDDMIEIPQNMLNP- 114 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 115 -------KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 162 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ P +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 163 HAIGHYVIEHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 222 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 223 KEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 282 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 283 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 337 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + + I DIQR V + YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 338 LAAEALKDIIPSSRPRVVTIHDIQRTVGEEYNVKLEDFKAKKRTKSIAFPRQIAMYLSRE 397 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ +++TD L+K+++ Sbjct: 398 LTDYSLPKIGEEFGGRDHTTVIHAHEKISNLVKTDTNLQKQIQ 440 >gi|149182290|ref|ZP_01860769.1| chromosomal replication initiation protein [Bacillus sp. SG-1] gi|148849982|gb|EDL64153.1| chromosomal replication initiation protein [Bacillus sp. SG-1] Length = 448 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 158/474 (33%), Positives = 271/474 (57%), Gaps = 37/474 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ S ++ ++ + +W + K HS+ + + ++ P F + W++ RY + I Sbjct: 3 NIGDLWNKALSNIEKKISKPSFDTWLKSTKAHSIQGDTLVITAPNEFARDWLEGRYSQLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E I G E++V+ + +P ++ P +I P K+ + Sbjct: 63 SDVLLE----ITGEELIVKFI-IPQNQE-----------PEEFDIPVPP----KKVVDND 102 Query: 154 FGSP-----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 G L+ +++F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLG Sbjct: 103 DGQEFQQNMLNPKYMFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + ++ P +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+ Sbjct: 158 KTHLMHAIGHYVLEHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDI 217 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 218 QFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPP 277 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 D E R +IL+ + L+I E ++++A + ++ REL+GA ++V S Sbjct: 278 DLETRIAILRKKAKAE-----GLDIPNEAMLYIANQIDSNIRELEGALIRVVAYSSLINK 332 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + A++A E L ++ + + K + I DIQR+V + +N+ D + +R +++ PRQ+AM Sbjct: 333 DINADLAAEALKDIIPSSKPKVITIADIQRVVGEQFNVRMEDFKAKKRTKSIAFPRQIAM 392 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ MT S P+IG FG RDHTTV+HA K+ KML +D T + +++ ++ L+ Sbjct: 393 YLSREMTDFSLPKIGEEFGGRDHTTVIHAHEKISKMLGSDSTFQHQLKEIRDLL 446 >gi|126651995|ref|ZP_01724187.1| chromosomal replication initiation protein [Bacillus sp. B14905] gi|126591264|gb|EAZ85373.1| chromosomal replication initiation protein [Bacillus sp. B14905] Length = 449 Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 159/477 (33%), Positives = 272/477 (57%), Gaps = 38/477 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + E ++ V ++++ ++ + +W + K ++ + V ++ P +F + W++N Y+ Sbjct: 3 HLEELWNNVLAQVEQKISKPSFETWLKSTKLLSYNGSGSTVTIAAPNSFARDWLENHYIH 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT-- 149 IT + E + G ++L++ V V+K S +PII K Sbjct: 63 LITGILTE----LTGEDLLIKFV----VQKNQDSDDFD---------LPAPIIQAKNNDH 105 Query: 150 --ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 ISP +P ++ F TF+ GS NR A A+ ++AE + Y NP FI+ VGL Sbjct: 106 HDISPGMLNP---KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPFFIYGGVGL 157 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI + ++ PN +VVYL++E F F ++IRDN AL+ ++ RN+D+LLIDD Sbjct: 158 GKTHLMHAIGHYVLEHNPNAKVVYLSSEKFTNEFINSIRDNKALDFRNKYRNVDVLLIDD 217 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFL GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 218 IQFLAGKESTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAP 277 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA- 385 D E R +IL+ + E P EV++++A + ++ REL+GA ++V S Sbjct: 278 PDLETRIAILRKKAKADGLEVPN-----EVMLYIANQIDSNIRELEGALIRVVAYSSLVN 332 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + A +A E L ++ + + + I DIQ V +H++I D ++ +R + + PRQ+A Sbjct: 333 KDINATLAAEALKDIIPNSKPRTVTILDIQNAVGEHFSIRLEDFVAKKRTKLIAFPRQIA 392 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYLS+ +T S P+IG FG RDHTTV+HA K+ +L+ D+ L+++V+ ++ ++ + Sbjct: 393 MYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISSLLKNDVQLQQDVKQIRSMLGK 449 >gi|330813297|ref|YP_004357536.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] gi|327486392|gb|AEA80797.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] Length = 465 Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 164/464 (35%), Positives = 263/464 (56%), Gaps = 39/464 (8%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V ++LK G DV+ SW Q ++ V N + L V T F++ WI + Y + I FQ+ Sbjct: 20 VQNKLKEIYGLDVFKSWIQNVEAKEVKLNSLTLIVKTRFIRDWIVSHYADKILDFFQKLD 79 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI----SPVFGSP 157 S + ++ + S I+TN+ G Q I S + Sbjct: 80 SSVTRIQFEIH-------------ESFYVDKKISTNVVDFET--GTQVIDNKDSSYASNR 124 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 +D R FS ++ G SN++ +AA+ ++E H NPLFI+ SVGLGKTH+L AI Sbjct: 125 IDHRLTFSNYVVGESNQLVFSAAKRVSESLGH------YNPLFIYGSVGLGKTHILNAIG 178 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N ++ + +++YL+AE FM++F +I++ KD RN D+L++DD+QF+ GK + Sbjct: 179 NEL--KKTDKKIIYLSAERFMYQFVKSIKNKDTQKFKDVFRNADVLILDDIQFISGKEVT 236 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + NSL+++ QV+ + DR P++L+ + RI+SRL GG+ V + D +R IL Sbjct: 237 QEEFFYTFNSLVENQSQVIVSCDRSPNDLDRIQDRIKSRLSGGLVVDIQPPDIALRLQIL 296 Query: 337 KNRLAISQKEDPK-LNINEEVLMHVARTVTTSGRELDGAFNQLVFR---HSFAPILTAE- 391 KNR + K + I++E+L +A +S R++ G N+++ + P L Sbjct: 297 KNRCKTEETYFGKEVLISDEILSFIANEFKSSIRDMLGVLNRIIASSRIQNKVPTLQDAR 356 Query: 392 -IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 I +LLS++ + + +EDIQ++V +YN+ D LS+RR R + RPRQVAMYL+K Sbjct: 357 LILKDLLSNMQSV-----VTVEDIQKLVVHYYNLPMTDFLSSRRSRHIARPRQVAMYLAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T +S PEIGR+F RDHTTV+HA++K+E+++ D + EV+ Sbjct: 412 KLTTKSLPEIGRKFTGRDHTTVIHAIKKIEELMNADKKFEYEVQ 455 >gi|89101119|ref|ZP_01173955.1| chromosomal replication initiation protein [Bacillus sp. NRRL B-14911] gi|89084174|gb|EAR63339.1| chromosomal replication initiation protein [Bacillus sp. NRRL B-14911] Length = 425 Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 255/454 (56%), Gaps = 39/454 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV--- 111 + +W + K HS+ +++ ++ P F + W++ RY + I+ + + GV+ ++ Sbjct: 1 FDTWLKSTKAHSLQGDLLIITAPNEFARDWLEERYSQLISGILYDITGEELGVKFIIPQN 60 Query: 112 ---RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 V LP K P+N L+ ++ F TF+ Sbjct: 61 QGEEEVDLPVPPKKGKKDDDQPELPLNM---------------------LNPKYTFDTFV 99 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + P + Sbjct: 100 IGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYVQDHNPAAK 154 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q EF H N+L Sbjct: 155 VVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTL 214 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 215 HEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAE---- 270 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGET 406 L+I EV++++A + ++ REL+GA ++V S + A++A E L ++ + + Sbjct: 271 -GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALRDIIPSSKP 329 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I +IQ+ V +HY++ D + +R ++V PRQ+AMYLS+ +T S P+IG FG Sbjct: 330 KVITIHEIQKTVGEHYSVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDFSLPKIGEEFGG 389 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RDHTTV+HA K+ K+L+TD L+K+++ L L+ Sbjct: 390 RDHTTVIHAHEKISKLLQTDPQLQKQLKELNELL 423 >gi|205371912|ref|ZP_03224732.1| chromosomal replication initiation protein [Bacillus coahuilensis m4-4] Length = 447 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 156/464 (33%), Positives = 264/464 (56%), Gaps = 29/464 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ ++ ++ + +W + K HS+ + + ++ P F + W++ RY + I Sbjct: 3 NISDLWNKALETIEQKISKPSFDTWLKSTKAHSLKGDNLVITAPNEFARDWLEGRYSQLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ I G E+ ++ + +P ++ P I + GK Sbjct: 63 AEVI----FSITGEELTIKFI-IPQNQE-----------PEEFEIPLPSVKNGKDDDHHD 106 Query: 154 F-GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 107 FQTSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 161 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + ++ P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL Sbjct: 162 MHAIGHYVLEHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLA 221 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 222 GKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 281 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + L+I E ++++A + T+ REL+GA ++V S + A Sbjct: 282 RIAILRKKAKAE-----GLDIPNEAMLYIANQIDTNIRELEGALIRVVAYSSLINKDINA 336 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L ++ + + + + I DIQR V +HYN+ D + +R +++ PRQ+AMYLS+ Sbjct: 337 DLASEALKDIIPSSKPRVISISDIQRAVGEHYNVKLEDFKAKKRTKSIAFPRQIAMYLSR 396 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L++D L+ +V+ Sbjct: 397 ELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLQSDSLLQSQVK 440 >gi|224503076|ref|ZP_03671383.1| chromosomal replication initiation protein [Listeria monocytogenes FSL R2-561] Length = 443 Score = 280 bits (717), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 159/455 (34%), Positives = 258/455 (56%), Gaps = 30/455 (6%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T P N + + I +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKP--------NPALDEDGIEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + K Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AK 289 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTG 404 D L+I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + Sbjct: 290 AD-GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSS 348 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG F Sbjct: 349 KSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEF 408 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 G RDHTTV+HA K+ ++L+TD LK ++ ++++ Sbjct: 409 GGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEKI 443 >gi|302390798|ref|YP_003826618.1| chromosomal replication initiator protein DnaA [Acetohalobium arabaticum DSM 5501] gi|302202875|gb|ADL11553.1| chromosomal replication initiator protein DnaA [Acetohalobium arabaticum DSM 5501] Length = 449 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 161/459 (35%), Positives = 261/459 (56%), Gaps = 30/459 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 K+++ + +W + K SV ++ + VP F K W++ RY + L +E S++ Sbjct: 17 FKSELSKPSFKTWLKSTKLISVENDHAVIEVPNEFSKDWLETRY----SNLIKETISQLI 72 Query: 106 GVEILVR-SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 +I ++ ++ EK + K + +P + L+ ++ F Sbjct: 73 DRKINIKFTIPTNKEEKLVNKKKKDKKTDNQEEDDNNP-------------ASLNPKYTF 119 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+ GSSNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + I+ Sbjct: 120 DTFVIGSSNRFAHAASLAVAEAPAKAY-----NPLFIYGDVGLGKTHLMHAIGHYIIEHN 174 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 +L+VVY+T+E F ++IRD+ + ++ RNID+LLIDD+QFL GK Q EF H Sbjct: 175 SDLKVVYVTSEKFTNELINSIRDDNTVKFRNKYRNIDILLIDDIQFLAGKERTQEEFFHT 234 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + + Sbjct: 235 FNALHEANKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQEPDLETRIAILRKKATLE 294 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVN 402 E P EV++++A + ++ REL+GA ++V S +T E+A E L +++ Sbjct: 295 DLEVPN-----EVIVYIANQIHSNIRELEGALIRVVAYSSLTNKEITVELAQEALKDIIS 349 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 T E +++ I+ IQ++VA HYN+ D+ S +R R + PRQVAMYLS+ +T S P+IG Sbjct: 350 TTEAEEINIKLIQQIVANHYNLEIEDMKSRKRTRAIAFPRQVAMYLSRELTDSSLPKIGE 409 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +FG RDHTTVLHA K++ E DI K ++ L I+ Sbjct: 410 KFGGRDHTTVLHAYNKIDDKKEEDIQFKNTIKTLTNKIN 448 >gi|16799080|ref|NP_469348.1| chromosomal replication initiation protein [Listeria innocua Clip11262] gi|116871423|ref|YP_848204.1| chromosomal replication initiation protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|21362477|sp|Q92FV2|DNAA_LISIN RecName: Full=Chromosomal replication initiator protein DnaA gi|123460548|sp|A0AEI7|DNAA_LISW6 RecName: Full=Chromosomal replication initiator protein DnaA gi|16412422|emb|CAC95234.1| Chromosomal replication initiation protein DnaA [Listeria innocua Clip11262] gi|116740301|emb|CAK19419.1| chromosomal replication initiation protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|313621673|gb|EFR92458.1| chromosomal replication initiator protein DnaA [Listeria innocua FSL S4-378] gi|313625799|gb|EFR95415.1| chromosomal replication initiator protein DnaA [Listeria innocua FSL J1-023] Length = 451 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 159/454 (35%), Positives = 257/454 (56%), Gaps = 30/454 (6%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T P N + + I +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKP--------NPALDEDGIEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + K Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AK 289 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTG 404 D L+I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + Sbjct: 290 AD-GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSS 348 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG F Sbjct: 349 KSQVITISGIQETVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEF 408 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 G RDHTTV+HA K+ ++L+TD LK ++ +++ Sbjct: 409 GGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEK 442 >gi|16802049|ref|NP_463534.1| chromosomal replication initiation protein [Listeria monocytogenes EGD-e] gi|46906225|ref|YP_012614.1| chromosomal replication initiation protein [Listeria monocytogenes serotype 4b str. F2365] gi|217965934|ref|YP_002351612.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HCC23] gi|224498306|ref|ZP_03666655.1| chromosomal replication initiation protein [Listeria monocytogenes Finland 1988] gi|254824779|ref|ZP_05229780.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL J1-194] gi|254827425|ref|ZP_05232112.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL N3-165] gi|254830707|ref|ZP_05235362.1| chromosomal replication initiation protein [Listeria monocytogenes 10403S] gi|254899685|ref|ZP_05259609.1| chromosomal replication initiation protein [Listeria monocytogenes J0161] gi|254913112|ref|ZP_05263124.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes J2818] gi|254930868|ref|ZP_05264227.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HPB2262] gi|254937493|ref|ZP_05269190.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes F6900] gi|254991923|ref|ZP_05274113.1| chromosomal replication initiation protein [Listeria monocytogenes FSL J2-064] gi|255026750|ref|ZP_05298736.1| chromosomal replication initiation protein [Listeria monocytogenes FSL J2-003] gi|255028897|ref|ZP_05300848.1| chromosomal replication initiation protein [Listeria monocytogenes LO28] gi|255520069|ref|ZP_05387306.1| chromosomal replication initiation protein [Listeria monocytogenes FSL J1-175] gi|284803265|ref|YP_003415130.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5578] gi|284996406|ref|YP_003418174.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5923] gi|290892037|ref|ZP_06555034.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL J2-071] gi|300763385|ref|ZP_07073383.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL N1-017] gi|315273163|ref|ZP_07869210.1| chromosomal replication initiator protein DnaA [Listeria marthii FSL S4-120] gi|21362468|sp|Q8YAW2|DNAA_LISMO RecName: Full=Chromosomal replication initiator protein DnaA gi|61212634|sp|Q725H0|DNAA_LISMF RecName: Full=Chromosomal replication initiator protein DnaA gi|254777905|sp|B8DAQ9|DNAA_LISMH RecName: Full=Chromosomal replication initiator protein DnaA gi|16409360|emb|CAC98216.1| Chromosomal replication initiation protein DnaA [Listeria monocytogenes EGD-e] gi|46879489|gb|AAT02791.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes serotype 4b str. F2365] gi|217335204|gb|ACK40998.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HCC23] gi|258599803|gb|EEW13128.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL N3-165] gi|258610095|gb|EEW22703.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes F6900] gi|284058827|gb|ADB69768.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5578] gi|284061873|gb|ADB72812.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5923] gi|290558631|gb|EFD92148.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL J2-071] gi|293582413|gb|EFF94445.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HPB2262] gi|293591114|gb|EFF99448.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes J2818] gi|293594018|gb|EFG01779.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL J1-194] gi|300515662|gb|EFK42711.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL N1-017] gi|307569524|emb|CAR82703.1| chromosomal replication initiator protein [Listeria monocytogenes L99] gi|313616214|gb|EFR89292.1| chromosomal replication initiator protein DnaA [Listeria marthii FSL S4-120] gi|328468322|gb|EGF39328.1| chromosomal replication initiation protein [Listeria monocytogenes 1816] gi|332310334|gb|EGJ23429.1| Chromosomal replication initiator protein dnaA [Listeria monocytogenes str. Scott A] Length = 451 Score = 280 bits (716), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 159/454 (35%), Positives = 257/454 (56%), Gaps = 30/454 (6%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T P N + + I +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKP--------NPALDEDGIEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + K Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AK 289 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTG 404 D L+I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + Sbjct: 290 AD-GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSS 348 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG F Sbjct: 349 KSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEF 408 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 G RDHTTV+HA K+ ++L+TD LK ++ +++ Sbjct: 409 GGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEK 442 >gi|255527586|ref|ZP_05394450.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] gi|296186784|ref|ZP_06855185.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] gi|255508719|gb|EET85095.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] gi|296048498|gb|EFG87931.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] Length = 450 Score = 280 bits (715), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 162/462 (35%), Positives = 272/462 (58%), Gaps = 33/462 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ NI+HLSVP +F + + RY + I + S+ Sbjct: 16 IKGELTEVSFNTWIKSIIPLSMDDNILHLSVPNDFTRGILNTRYKDLIINALKLITSKKY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 VE S+A V+ T+ P TKL ++I+ ++ + L+ ++ F Sbjct: 76 NVEF---SIASEEVQ-TSEEPK-TKLKDNRSHIN----------VNDEMSTMLNPKYTFD 120 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ P Sbjct: 121 SFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILENNP 175 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 + +VVY+++E F ++I+D+ ++ ++ RNID+LLIDD+QF+ GK Q EF H Sbjct: 176 SSKVVYVSSEKFTNELINSIKDDKNVDFRNKYRNIDVLLIDDIQFIAGKERTQEEFFHTF 235 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 236 NALHDATKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADVEN 295 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHL 400 LNI EV++++A + ++ REL+GA ++V +F+ + EI A E L + Sbjct: 296 -----LNIPNEVMVYIATKIKSNIRELEGALIRIV---AFSSLTNKEISVDLAAEALKDI 347 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 +++ ++K++ I+ IQ +VA +YN+ +D S RR R V PRQ+AMYLS+ +T S P+I Sbjct: 348 ISSKQSKQVTIDLIQDVVANYYNLKVDDFKSARRTRNVAFPRQIAMYLSRKLTDMSLPKI 407 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G FG RDHTTV+HA K+ L+ D +L+ V L + I++ Sbjct: 408 GEEFGGRDHTTVIHAYEKISGNLKVDESLQNAVNDLTKRINQ 449 >gi|319651099|ref|ZP_08005233.1| chromosomal replication initiator protein dnaA [Bacillus sp. 2_A_57_CT2] gi|317397269|gb|EFV77973.1| chromosomal replication initiator protein dnaA [Bacillus sp. 2_A_57_CT2] Length = 448 Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 266/471 (56%), Gaps = 31/471 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ + ++ ++ + +W + K HS+ + + + P F + W++ RY + I Sbjct: 3 NIADLWNNALANIEKKISKPSFDTWLKSTKAHSLQGDTLIVKAPNEFARDWLEERYSQLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + I G E+ V+ + +P E+ P K + P+ + Sbjct: 63 SGILYD----ITGEELGVKFI-IPQNQSEEEVDLPLPPKKKKPEEEQPELPLTM------ 111 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 112 ------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + P+ +VVYL++E F F ++IRDN A + +D RN+D+LLIDD+QFL Sbjct: 161 LMHAIGHYVLDHNPSAKVVYLSSEKFTNEFINSIRDNKAGDFRDKYRNVDVLLIDDIQFL 220 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L + +KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 221 AGKEQTQEEFFHTFNTLHEESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLE 280 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILT 389 R +IL+ + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 281 TRIAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDIN 335 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A++A E L ++ + + K + I +IQR+V +H+N+ D + +R ++V PRQ+AMYLS Sbjct: 336 ADLAAEALKDIIPSSKPKVITIHEIQRVVGEHFNVKLEDFKAKKRTKSVAFPRQIAMYLS 395 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ KML+ D +K+++ + ++ Sbjct: 396 RELTDFSLPKIGEEFGGRDHTTVIHAHEKISKMLQADSQFEKQLKEINEML 446 >gi|289433374|ref|YP_003463246.1| chromosomal replication initiator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169618|emb|CBH26152.1| chromosomal replication initiator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 451 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 159/454 (35%), Positives = 257/454 (56%), Gaps = 30/454 (6%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T PS + + I +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKPSPA--------LDEDGIEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + K Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AK 289 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTG 404 D L+I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + Sbjct: 290 AD-GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSS 348 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG F Sbjct: 349 KSQVITISGIQETVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEF 408 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 G RDHTTV+HA K+ ++L+TD LK ++ +++ Sbjct: 409 GGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEK 442 >gi|226222640|ref|YP_002756747.1| Chromosomal replication initiation protein DnaA [Listeria monocytogenes Clip81459] gi|259645254|sp|C1L2Z8|DNAA_LISMC RecName: Full=Chromosomal replication initiator protein DnaA gi|225875102|emb|CAS03790.1| Chromosomal replication initiation protein DnaA [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 451 Score = 279 bits (714), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 158/454 (34%), Positives = 257/454 (56%), Gaps = 30/454 (6%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T P N + + + +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKP--------NPALDEDGVEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + K Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AK 289 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTG 404 D L+I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + Sbjct: 290 AD-GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSS 348 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG F Sbjct: 349 KSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEF 408 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 G RDHTTV+HA K+ ++L+TD LK ++ +++ Sbjct: 409 GGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEK 442 >gi|88606838|ref|YP_505074.1| chromosomal replication initiation protein [Anaplasma phagocytophilum HZ] gi|88597901|gb|ABD43371.1| chromosomal replication initiator protein DnaA [Anaplasma phagocytophilum HZ] Length = 459 Score = 279 bits (714), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 170/466 (36%), Positives = 268/466 (57%), Gaps = 30/466 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V +L++ G Y SW L + + V L VPT F+K WI YLE I + ++ E+ Sbjct: 16 VQKKLRDFYGSAAYDSWLSALVYSGYENGRVILLVPTRFIKEWILVHYLEKILEYWRGEN 75 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-----FGS 156 S + ++I V A SV + S+ Q +S V S Sbjct: 76 SAVYCIDICVADGAESSVLQGNRGVSVRSTEA--------------QEVSSVSTYEHLSS 121 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD RF F F+ G N +A AA+ +AE NPLF++ VGLGKTHL+ AI Sbjct: 122 PLDPRFTFDNFVVGKPNELAFAAARRVAESSE---PIPGSNPLFLYGGVGLGKTHLMHAI 178 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 A ++ ++ YL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Sbjct: 179 AWYALGSPRKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDS 238 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D +KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R I Sbjct: 239 TQEEFFHTFNALIDQSKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGI 298 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L+ ++ E +++ +EVL +A+ + ++ REL+GA N++V S +T E+A Sbjct: 299 LQLKV-----EKMGIHVPDEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGSSVTVELAS 353 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++LS L+ + + I+ IQ+ VA+ + I D+ S RR+R + RPRQVAMYLSK +T Sbjct: 354 DILSDLLRANH-RLVTIDAIQKKVAEFFGIRLEDMYSARRLRALARPRQVAMYLSKRLTQ 412 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S P+IG+ FG RDH TV+HAV++VEK ++TD L ++ LL R++ Sbjct: 413 KSLPDIGKSFGGRDHATVIHAVKQVEKFIDTDSKLAGDISLLIRML 458 >gi|258611656|ref|ZP_05241189.2| chromosomal replication initiator protein dnaA [Listeria monocytogenes FSL R2-503] gi|258605133|gb|EEW17741.1| chromosomal replication initiator protein dnaA [Listeria monocytogenes FSL R2-503] Length = 433 Score = 279 bits (713), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 156/446 (34%), Positives = 254/446 (56%), Gaps = 29/446 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ V + Sbjct: 6 YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFDVR-FIDGE 64 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 + E T P N + + I +GK ++P R+VF TF+ GS NR Sbjct: 65 QEENFEYTVIKP--------NPALDEDGIEIGKHMLNP--------RYVFDTFVIGSGNR 108 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N +V+YL++ Sbjct: 109 FAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDNAKVMYLSS 163 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N+L D KQ Sbjct: 164 EKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLYDEQKQ 223 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + K D L+I Sbjct: 224 IIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AKAD-GLDIP 278 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIE 412 EV++++A + ++ REL+GA ++V S +TA +A E L ++ + +++ + I Sbjct: 279 NEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSSKSQVITIS 338 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDHTTV Sbjct: 339 GIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEFGGRDHTTV 398 Query: 473 LHAVRKVEKMLETDITLKKEVELLKR 498 +HA K+ ++L+TD LK ++ +++ Sbjct: 399 IHAHEKISQLLKTDQVLKNDLAEIEK 424 >gi|295702243|ref|YP_003595318.1| chromosomal replication initiator protein DnaA [Bacillus megaterium DSM 319] gi|294799902|gb|ADF36968.1| chromosomal replication initiator protein DnaA [Bacillus megaterium DSM 319] Length = 447 Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 267/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ +++ ++ + +W + K H++ + + ++ P +F + W+++RY Sbjct: 3 NIHDLWNRALDQIEKKLSKPSFETWLKSTKAHALQGDTLIITAPNDFARDWLESRY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + L E + G E+ V+ + P+ + +I + K + Sbjct: 59 SNLIAETLYDLTGEELDVKFIIPPNQAEE------------EFDIQAPKKKVNKDDGAEF 106 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+S++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 107 PQSMLNSKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + P +VVYL++E F F ++IRDN A+ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVLDHNPAAKVVYLSSEKFTNEFINSIRDNKAVEFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + K D L I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKK----AKAD-GLVIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + + + I+DIQ++V + +NI +D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPSSKPRVITIQDIQQIVGQEFNIKLDDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+++TD L+K+++ Sbjct: 397 LTDFSLPKIGEEFGGRDHTTVIHAHEKISKLVQTDTDLQKQIK 439 >gi|294496876|ref|YP_003560576.1| chromosomal replication initiator protein DnaA [Bacillus megaterium QM B1551] gi|294346813|gb|ADE67142.1| chromosomal replication initiator protein DnaA [Bacillus megaterium QM B1551] Length = 447 Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 155/463 (33%), Positives = 267/463 (57%), Gaps = 28/463 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ +++ ++ + +W + K H++ + + ++ P +F + W+++RY Sbjct: 3 NIHDLWDRALDQIEKKLSKPSFETWLKSTKAHALQGDTLIITAPNDFARDWLESRY---- 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + L E + G E+ V+ + P+ + +I + K + Sbjct: 59 SNLIAETLYDLTGEELDVKFIIPPNQAEE------------EFDIQTPKKKVNKDEGAEF 106 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+S++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 107 PQSMLNSKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + P +VVYL++E F F ++IRDN A+ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVLDHNPAAKVVYLSSEKFTNEFINSIRDNKAVEFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + K D L I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRKK----AKAD-GLVIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + + + I+DIQ++V + +NI +D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPSSKPRVITIQDIQQIVGQEFNIKLDDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+++TD L+K+++ Sbjct: 397 LTDFSLPKIGEEFGGRDHTTVIHAHEKISKLVQTDTDLQKQIK 439 >gi|327438162|dbj|BAK14527.1| ATPase [Solibacillus silvestris StLB046] Length = 447 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 158/471 (33%), Positives = 267/471 (56%), Gaps = 28/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + E+++ V ++ + ++ + +W + K + V +S P +F + W++ Y+ I Sbjct: 3 HLENLWNAVLAQAEQKISKPSFDTWLKSTKLLAHSGTKVTISAPNSFARDWLEQYYIHMI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 T + E + G ++++ V V+K ++ PI S I+P Sbjct: 63 TGILNE----LTGEDLVINFV----VQKDQTADDFELPPPITQAKSSE-----HHDITPG 109 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 +P ++ F TF+ GS NR A A+ ++AE + Y NP FI+ VGLGKTHL+ Sbjct: 110 MLNP---KYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPFFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + P VVYL++E F F ++IRDN ++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVKEHNPTANVVYLSSEKFTNEFINSIRDNKTIDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KESTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+ + K D L+I EV++++A V T+ REL+GA ++V S + ++ E Sbjct: 282 IAILRKK----AKAD-GLDIPNEVMLYIANQVDTNIRELEGALIRVVAYSSLVNMDVSPE 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + + I DIQ +HY+I D + RR +++ PRQVAMYLS+ Sbjct: 337 LAAEALKDIMPNSKPRMISILDIQTATGEHYSIRLEDFKAKRRTKSIAYPRQVAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG FG RDHTTV+HA K+ +L+TD L+++++ ++ ++ + Sbjct: 397 LTDYSLPKIGEEFGGRDHTTVIHAHEKISSLLKTDQQLQQDIKQIRSMLGK 447 >gi|15612564|ref|NP_240867.1| chromosomal replication initiation protein [Bacillus halodurans C-125] gi|14194694|sp|Q9RCA2|DNAA_BACHD RecName: Full=Chromosomal replication initiator protein DnaA gi|5672647|dbj|BAA82685.1| 78%-identity [Bacillus halodurans] gi|10172613|dbj|BAB03720.1| initiation of chromosome replication [Bacillus halodurans C-125] Length = 449 Score = 278 bits (710), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 154/463 (33%), Positives = 258/463 (55%), Gaps = 26/463 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ ++ +V + +W ++ K +S+ + + ++ P F + W++ Y E I Sbjct: 3 NIHDLWERALKSMEKKVSKPSFETWLKQTKANSIEDSTIIITAPNEFARDWLEKHYDELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + GV + + V P+ P K P+ + Sbjct: 63 SETIDD----LTGVRLYPKFVI----------PTSQLDEPFVEQELKKPMKQPPAQNGEM 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 109 PNNMLNDKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + PN +VVYL++E F F +AIRDN A+N ++ RN+D+LLIDD+QFL G Sbjct: 164 HAIGHYVMDHNPNAKVVYLSSEKFTNEFINAIRDNKAVNFRNKYRNVDVLLIDDIQFLAG 223 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 224 KEQTQEEFFHTFNALHEDNKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L+I EV++++A + T+ REL+GA ++V S + A+ Sbjct: 284 IAILRKKAKAEN-----LDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINQDMNAD 338 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + + I DIQ+ V +++++ D + +R ++V PRQ+AMYLS+ Sbjct: 339 LAAEALKDIIPNAKPRVLTITDIQKTVGEYFHVKLEDFKAKKRTKSVAFPRQIAMYLSRE 398 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T S P+IG FG RDHTTV+HA K+ K+L TD L+ +++ Sbjct: 399 LTDASLPKIGSEFGGRDHTTVIHAHEKISKLLSTDQELQDKIQ 441 >gi|323487687|ref|ZP_08092945.1| chromosomal replication initiation protein [Planococcus donghaensis MPA1U2] gi|323398421|gb|EGA91209.1| chromosomal replication initiation protein [Planococcus donghaensis MPA1U2] Length = 447 Score = 277 bits (709), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 264/471 (56%), Gaps = 28/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + +++ V ++++ ++ + +W + K S + V +S P +F + W++N Y+ I Sbjct: 3 HLDELWSSVLAQVETKISKPSFETWLKSTKLLSYQDDTVTISAPNSFARDWLENHYVHLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 T + S G +++++ V + ++ P G+ Sbjct: 63 TGIL----SDTTGDDMMIKFVVPKDQDMDDFQLPAPRVKP------------GQDQQHEF 106 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 107 LPGMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + ++ PN +VVYL++E F F ++IRDN +D R++D+LLIDD+QFL G Sbjct: 162 HAIGHYVLEHNPNAKVVYLSSEKFTNEFINSIRDNKTGEFRDKYRSVDILLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNTLHEESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+ + K D L+I +V+ ++A ++ ++ REL+GA ++V S ++AE Sbjct: 282 IAILRKK----AKAD-GLDIPNDVMTYIANSIDSNIRELEGALIRVVAYSSLINRDMSAE 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ V + +N+ D + RR + + PRQVAMYLS+ Sbjct: 337 LASEALKDIMPNSKPKVITILDIQNAVGEQFNVKLEDFKTKRRTKDIAYPRQVAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MT S P+IG FG RDHTTV+HA K+ KML + L+++V+ +K + + Sbjct: 397 MTDFSLPKIGEEFGGRDHTTVIHAHDKISKMLTDNQQLQQDVKDIKSALGK 447 >gi|269958921|ref|YP_003328710.1| chromosomal replication initiation protein [Anaplasma centrale str. Israel] gi|269848752|gb|ACZ49396.1| chromosomal replication initiation protein [Anaplasma centrale str. Israel] Length = 471 Score = 277 bits (708), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 177/492 (35%), Positives = 277/492 (56%), Gaps = 29/492 (5%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL 74 V+++E T V KR + ++ + V +L++ G +Y SW L + + V L Sbjct: 2 VDVSETTERCVVHKRQGQDGGDAAWRGVQKKLRDFYGSAIYDSWLSTLVYSGNENGRVVL 61 Query: 75 SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 VPT F+K WI YLE I K +Q+E + V+I V A P T+ S Sbjct: 62 LVPTRFIKEWILVHYLERILKYWQDESDAVYSVDICVSDGA-------GMQPQPTERSDG 114 Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + S + SPLD RF F F+ G N +A AA+ +AE + Sbjct: 115 VVDGSHVVV---VGGTYDHLSSPLDPRFTFDNFVVGKPNELAFAAARRVAESSA---PIP 168 Query: 195 RLNPLFIHASVGLGKTHLLQAIA----NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 NPLF++ VGLGKTHL+ AIA N+S+KR ++ YL+AE FM+++ +A+R Sbjct: 169 GSNPLFLYGGVGLGKTHLMHAIAWYILNSSVKR----KIAYLSAEKFMYQYVTALRSKDI 224 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + K+ R++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ Sbjct: 225 MLFKEQFRSVDILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVE 284 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 RI+SRL G+ + +E+R IL+ + E +++ EVL +A+ + ++ R Sbjct: 285 DRIKSRLGWGLVADINETTFELRLGILQLK-----TEKMGVHVPNEVLEFLAKNIKSNIR 339 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA N++V S +T E A +LS L+ + + + IQ+ VA+ + I D Sbjct: 340 ELEGALNKVVAHSSLVGSSVTIESASGILSDLLRANH-RLVTVGMIQKKVAEFFGIKLED 398 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + S RR+R + RPRQVAMYL+K +T +S P+IG+ FG RDH TV+HAV+++EK +E D Sbjct: 399 MYSARRLRALARPRQVAMYLAKRLTQKSLPDIGKSFGGRDHATVIHAVKQIEKFMEDDAK 458 Query: 489 LKKEVELLKRLI 500 L ++ LL R++ Sbjct: 459 LADDINLLIRML 470 >gi|302381117|ref|YP_003816940.1| chromosomal replication initiator protein DnaA [Brevundimonas subvibrioides ATCC 15264] gi|302191745|gb|ADK99316.1| chromosomal replication initiator protein DnaA [Brevundimonas subvibrioides ATCC 15264] Length = 478 Score = 276 bits (707), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 170/482 (35%), Positives = 261/482 (54%), Gaps = 41/482 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ S RL+ ++G ++S+ + L PT + + W++ L + + Sbjct: 15 DRIWNEASVRLRAEIGEGPFSSYIAPSAVRIDAAGNLILVTPTGYARDWVRKNALRRLNE 74 Query: 96 LFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L+ + G+ + VR A S AS+ ++ LS + +P TI+PV Sbjct: 75 LWLG----LDGLSRRLDVRCRAEVSSAPPASAVALPSLSSVGLETPVAP------TIAPV 124 Query: 154 F-------GSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASV 205 + L R F +F+EG N AL A Q+ + D H NP+F Sbjct: 125 TDGARAVRAAGLQERLTFDSFVEGQGNAFALAIARQTASWADGH------FNPIFFCGPY 178 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GKTHLL AIA + + +P+ +VVYLTAE F+ F A++D K+SLR+ D+LL+ Sbjct: 179 GYGKTHLLNAIAWEAQRLRPDAKVVYLTAERFLSTFVKAMQDRSTAAFKESLRSADMLLL 238 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q E L +L++ K++V +ADRPP L ++PR+RS L G++ P+ Sbjct: 239 DDVQFVGGKASTQEELLSTLTALIEDGKRIVLSADRPPMALTEVEPRLRSHLAAGLTCPV 298 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNI-----NEEVLMHVARTVTTSGRELDGAFNQLV 379 D ++ ++ +NR+A + L + EVL + S REL+GA N L Sbjct: 299 EPADRSLKIAVAQNRIAAFAR----LGVVNGEAQREVLEQLVDRTPGSVRELEGAVNTLA 354 Query: 380 FRHSFAPILTAEIADE---LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 + P LT+ DE LL + G +++ +++IQ+ VA+H+N+ + DLLS RR R Sbjct: 355 --AAAGPRLTSLGVDEALTLLGSALRGGPERRITVDEIQKTVAEHFNMKQADLLSERRTR 412 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 V RPRQ+AM+L K T RS+P+IGRRFG RDHTTVLH VRK+E+++ D + K+VE L Sbjct: 413 AVARPRQIAMWLCKQHTTRSYPDIGRRFGGRDHTTVLHGVRKIEELMPLDDQIAKDVEAL 472 Query: 497 KR 498 R Sbjct: 473 TR 474 >gi|297582339|ref|YP_003698119.1| chromosomal replication initiator protein DnaA [Bacillus selenitireducens MLS10] gi|297140796|gb|ADH97553.1| chromosomal replication initiator protein DnaA [Bacillus selenitireducens MLS10] Length = 451 Score = 276 bits (707), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 264/473 (55%), Gaps = 29/473 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLE 91 N ++ V S+++ +V + +WF+ S+ N + + P F + W++NRY Sbjct: 3 NLNDLWDQVLSKIEQKVSKPSFDTWFKYTVVDSIDQSSNTITVIAPNEFARDWLENRYFS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 +T+ E + G E+ R + LP E + L + N P++ Sbjct: 63 ILTETLYE----LTGAELEARFI-LPKDEGS-------DLDFVEKN--NPPVLQEDLDNG 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L++++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 109 ETTKHMLNTKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL Sbjct: 164 LMHAIGHYVVDHNPDAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDILLIDDIQFL 223 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 224 AGKEQTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLE 283 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL+ + L+I +EV+ ++A + T+ REL+GA ++V S + Sbjct: 284 TRIAILRKKAKAEN-----LDIPKEVMNYIANQIDTNIRELEGALIRVVAYSSLINQDMN 338 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A++A L ++ + KK+ IE +Q VA H+ I ++ + +R +TV PRQ+AMY++ Sbjct: 339 ADLAAVALKDIIPNSKPKKVTIESVQEAVAAHFQIRVEEMKAKKRTKTVAYPRQIAMYMA 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRLIS 501 + MT S P+IG FG RDHTTV+HA K+ ++ D L++ + E+ ++L S Sbjct: 399 REMTDSSLPKIGNEFGKRDHTTVIHAHEKISRLFADDEELQQHIREITEKLRS 451 >gi|150014893|ref|YP_001307147.1| chromosomal replication initiation protein [Clostridium beijerinckii NCIMB 8052] gi|189044634|sp|A6LPB1|DNAA_CLOB8 RecName: Full=Chromosomal replication initiator protein DnaA gi|149901358|gb|ABR32191.1| chromosomal replication initiator protein DnaA [Clostridium beijerinckii NCIMB 8052] Length = 449 Score = 276 bits (705), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 154/457 (33%), Positives = 264/457 (57%), Gaps = 29/457 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ + +W + + S+ N + +SVP +F + + RY + + + S++ Sbjct: 16 IKSELSEVSFNTWIKSCEPLSISSNTLKISVPNSFTQDILDKRYKDLVANSIKAVCSKLY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E ++ S E +SS +K +N +S S L+ ++ F+ Sbjct: 76 TIEFIIMSEIYEKEEIKSSSNQKSKAIVVNDEMS----------------STLNPKYTFN 119 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P Sbjct: 120 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILDGNP 174 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 N +VVY+++E F +AI+D+ ++ RN+D+LLIDD+QF+ GK Q EF H Sbjct: 175 NAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRNVDILLIDDIQFIAGKERTQEEFFHTF 234 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + + D+E R +ILK + + Sbjct: 235 NALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADVEN 294 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNT 403 LN+ EV+ ++A + ++ REL+GA +++ S +T ++A E L +++ Sbjct: 295 -----LNVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREVTVDLATEALKDIISK 349 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + K + I+ IQ +V+ ++N+ DL S RR R V PRQ+AMYLS+ +T S P+IG Sbjct: 350 KQGKHVTIDLIQDVVSSYFNLRVEDLKSQRRTRNVAYPRQIAMYLSRKLTDMSLPKIGEE 409 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 FG RDHTTV+HA K+ + L+TD +L+ V ++ K+L Sbjct: 410 FGGRDHTTVIHAYEKISENLKTDDSLQSTVNDITKKL 446 >gi|187777367|ref|ZP_02993840.1| hypothetical protein CLOSPO_00923 [Clostridium sporogenes ATCC 15579] gi|187774295|gb|EDU38097.1| hypothetical protein CLOSPO_00923 [Clostridium sporogenes ATCC 15579] Length = 448 Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 269/462 (58%), Gaps = 35/462 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ +N + L+VP +F K +++RY + I + S+ Sbjct: 16 IKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYKDLIVNALKLLTSKKY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++ +V + EK + N N KS I++ + + L+ ++ F Sbjct: 76 NIDFIV-----TTEEKIEENQK-------NHNNEKSNIVVNDE-----MSTMLNPKYTFD 118 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P Sbjct: 119 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILNNNP 173 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF+ GK Q EF H Sbjct: 174 KSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFHTF 233 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 234 NALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADVE- 292 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHL 400 KLNI EV++++A + ++ REL+GA ++V +F+ + EI A E L + Sbjct: 293 ----KLNIPNEVMVYIATKIKSNIRELEGALIRIV---AFSSLTNKEISVDLASEALKDI 345 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 +++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYLS+ +T S P+I Sbjct: 346 ISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYLSRKLTDMSLPKI 405 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G FG RDHTTV+HA K+ L+ D +L+ ++ L + I++ Sbjct: 406 GEEFGGRDHTTVIHAYEKISNNLKKDESLQNAIKELNKRINQ 447 >gi|153940298|ref|YP_001389370.1| chromosomal replication initiation protein [Clostridium botulinum F str. Langeland] gi|168181116|ref|ZP_02615780.1| chromosomal replication initiator protein DnaA [Clostridium botulinum NCTC 2916] gi|170756151|ref|YP_001779627.1| chromosomal replication initiation protein [Clostridium botulinum B1 str. Okra] gi|226947223|ref|YP_002802314.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A2 str. Kyoto] gi|166201878|sp|A7G9B0|DNAA_CLOBL RecName: Full=Chromosomal replication initiator protein DnaA gi|226735793|sp|B1IDU3|DNAA_CLOBK RecName: Full=Chromosomal replication initiator protein DnaA gi|254777894|sp|C1FPH3|DNAA_CLOBJ RecName: Full=Chromosomal replication initiator protein DnaA gi|152936194|gb|ABS41692.1| chromosomal replication initiator protein DnaA [Clostridium botulinum F str. Langeland] gi|169121363|gb|ACA45199.1| chromosomal replication initiator protein DnaA [Clostridium botulinum B1 str. Okra] gi|182668171|gb|EDT80150.1| chromosomal replication initiator protein DnaA [Clostridium botulinum NCTC 2916] gi|226843194|gb|ACO85860.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A2 str. Kyoto] gi|295317477|gb|ADF97854.1| chromosomal replication initiator protein DnaA [Clostridium botulinum F str. 230613] Length = 445 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 269/462 (58%), Gaps = 38/462 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ +N + L+VP +F K +++RY + I + S+ Sbjct: 16 IKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYKDLIVNALKLLTSKKY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++ +V + +EK N N KS I++ + + L+ ++ F Sbjct: 76 NIDFIVTTEE--KIEK-------------NHNNEKSNIVVNDE-----MSTMLNPKYTFD 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P Sbjct: 116 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILHNNP 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF+ GK Q EF H Sbjct: 171 KSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 231 NALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADVE- 289 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHL 400 KLNI EV++++A + ++ REL+GA ++V +F+ + EI A E L + Sbjct: 290 ----KLNIPNEVMVYIATKIKSNIRELEGALIRIV---AFSSLTNKEISVDLASEALKDI 342 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 +++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYLS+ +T S P+I Sbjct: 343 ISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYLSRKLTDMSLPKI 402 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G FG RDHTTV+HA K+ L+ D +L+ ++ L + I++ Sbjct: 403 GEEFGGRDHTTVIHAYEKISNNLKKDESLQNAIKELNKRINQ 444 >gi|153952671|ref|YP_001393436.1| chromosomal replication initiation protein [Clostridium kluyveri DSM 555] gi|219853344|ref|YP_002470466.1| chromosomal replication initiator protein dnaA [Clostridium kluyveri NBRC 12016] gi|189044635|sp|A5N457|DNAA_CLOK5 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777896|sp|B9DXS7|DNAA_CLOK1 RecName: Full=Chromosomal replication initiator protein DnaA gi|146345552|gb|EDK32088.1| DnaA [Clostridium kluyveri DSM 555] gi|219567068|dbj|BAH05052.1| chromosomal replication initiator protein dnaA [Clostridium kluyveri NBRC 12016] Length = 451 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 161/451 (35%), Positives = 261/451 (57%), Gaps = 33/451 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + + S+ ++ L+VP + K + N+Y + I + Q S+ V+ L+ S Sbjct: 25 FNTWIKSITPISIENDTFMLTVPNDLTKGILSNKYTDLIIRSLQMVTSQKYNVKFLISS- 83 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 LP L IN K II +S + L+ ++ F++F+ G+SNR Sbjct: 84 ELPE--------EFLTLDTINEQNIKGSII-----VSDEMSAMLNPKYTFTSFVIGNSNR 130 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + + +VVY+++ Sbjct: 131 FAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHHILHNNTSCKVVYVSS 185 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F ++I+D+ + + RNID+LLIDD+QF+ GK Q EF H N+L ++ KQ Sbjct: 186 EKFTNELINSIKDDKNVEFRSKYRNIDVLLIDDIQFIAGKERTQEEFFHTFNALYEANKQ 245 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + KLNI Sbjct: 246 IILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADVE-----KLNIP 300 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVNTGETKKM 409 EV+ ++A + ++ REL+GA ++V +F+ + EI A E L ++++G++K++ Sbjct: 301 NEVMAYIATKIKSNIRELEGALIRIV---AFSSLTNKEISVDLAIEALKDIISSGQSKQV 357 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 IE IQ +V+ +YN+ +D S+RR R V PRQ+AMYL + +T S P+IG FG RDH Sbjct: 358 TIELIQDVVSNYYNLKVSDFKSSRRTRNVAFPRQIAMYLCRKLTDMSLPKIGEEFGGRDH 417 Query: 470 TTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 TTV+HA K+ L+ D +LK V +L KRL Sbjct: 418 TTVIHAYEKISNNLKKDESLKNAVNDLTKRL 448 >gi|75761786|ref|ZP_00741721.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490719|gb|EAO54000.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 447 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 152/452 (33%), Positives = 256/452 (56%), Gaps = 28/452 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 22 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 81 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P+ N ++ Q++ Sbjct: 82 SETLYD----LTGAKLAIRFI----IPQSQAEEDI-DLPPVKRNPAQDDSAHLPQSM--- 129 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 130 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 180 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 181 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 240 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 241 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 300 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 301 IAILRKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 355 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 356 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 415 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +T S P IG FG RDHTTV+HA K+ K+L Sbjct: 416 LTDSSLPNIGEEFGGRDHTTVIHAHEKISKLL 447 >gi|170760502|ref|YP_001785336.1| chromosomal replication initiation protein [Clostridium botulinum A3 str. Loch Maree] gi|226735794|sp|B1L1K6|DNAA_CLOBM RecName: Full=Chromosomal replication initiator protein DnaA gi|169407491|gb|ACA55902.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A3 str. Loch Maree] Length = 445 Score = 275 bits (702), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 268/462 (58%), Gaps = 38/462 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ +N + L+VP +F K +++RY + I + S+ Sbjct: 16 IKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYKDLIVNALKLLTSKKY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++ +V + +EK N N KS I++ + + L+ ++ F Sbjct: 76 NIDFIVTTEE--KIEK-------------NHNNEKSNIVVNDE-----MSTMLNPKYTFD 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P Sbjct: 116 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILHNNP 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF+ GK Q EF H Sbjct: 171 KSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 231 NALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADVE- 289 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHL 400 KLNI EV++++A + ++ REL+GA ++V +F+ + EI A E L + Sbjct: 290 ----KLNIPNEVMVYIATKIKSNIRELEGALIRIV---AFSSLTNKEISVDLASEALKDI 342 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 +++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYLS+ +T S P+I Sbjct: 343 ISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYLSRKLTDMSLPKI 402 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G FG RDHTTV+HA K+ L+ D +L+ + L + I++ Sbjct: 403 GEEFGGRDHTTVIHAYEKISNNLKKDESLQNAINDLNKRINQ 444 >gi|322804279|emb|CBZ01829.1| DnaA DNA replication protein [Clostridium botulinum H04402 065] Length = 445 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 268/462 (58%), Gaps = 38/462 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ +N + L+VP +F K +++RY + I + S+ Sbjct: 16 IKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYKDLIVNALKLLTSKKY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++ +V + I K N N KS I++ + + L+ ++ F Sbjct: 76 NIDFIV-----------TTEEKIRK----NHNNEKSNIVVNDE-----MSTMLNPKYTFD 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P Sbjct: 116 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILHNNP 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF+ GK Q EF H Sbjct: 171 KSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 231 NALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADVE- 289 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHL 400 KLNI EV++++A + ++ REL+GA ++V +F+ + EI A E L + Sbjct: 290 ----KLNIPNEVMVYIATKIKSNIRELEGALIRIV---AFSSLTNKEISIDLASEALKDI 342 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 +++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYLS+ +T S P+I Sbjct: 343 ISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYLSRKLTDMSLPKI 402 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G FG RDHTTV+HA K+ L+ D +L+ ++ L + I++ Sbjct: 403 GEEFGGRDHTTVIHAYEKISNNLKKDESLQNAIKELNKRINQ 444 >gi|182416749|ref|ZP_02948146.1| chromosomal replication initiator protein DnaA [Clostridium butyricum 5521] gi|237669665|ref|ZP_04529643.1| chromosomal replication initiator protein DnaA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379406|gb|EDT76901.1| chromosomal replication initiator protein DnaA [Clostridium butyricum 5521] gi|237654899|gb|EEP52461.1| chromosomal replication initiator protein DnaA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 450 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 274/473 (57%), Gaps = 30/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++I+ +K+++ + +W + + S+ + + +SVP +F + + RY Sbjct: 1 MDADLKNIWAKTLETIKSELSEVSFNTWIKSCEPISISSDTITISVPNSFTQDILDKRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVE-KTASSPSITKLSPINTNISKSPIILGKQT 149 + + + S++ +E ++ S A + K SS S +K +N +S Sbjct: 61 DLVANSIEVVCSKLYKIEFVIASEASEKEDLKETSSNSASKSIVVNDEMS---------- 110 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S L+ ++ F++F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGK Sbjct: 111 ------STLNPKYTFNSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGK 159 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + + P+ +VVY+++E F +AI+D+ + ++ RN+D+LLIDD+Q Sbjct: 160 THLMHAIGHYILDNNPSAKVVYVSSEKFTNELINAIKDDKNEDFRNKYRNVDVLLIDDIQ 219 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + + D Sbjct: 220 FIAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPD 279 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 +E R +ILK + + LN+ EV+ ++A + ++ REL+GA +++ S Sbjct: 280 FETRMAILKKKADVEN-----LNVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNRD 334 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T ++A E L +++ + K + I+ IQ +V+ ++N+ DL S RR R V PRQ+AMY Sbjct: 335 VTVDLATEALKDIISKKQGKHITIDLIQDVVSSYFNLRIEDLKSQRRTRNVAHPRQIAMY 394 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 LS+ +T S P+IG FG RDHTTV+HA K+ + L+TD +L+ V ++ K+L Sbjct: 395 LSRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISENLKTDDSLQHTVNDITKKL 447 >gi|220930851|ref|YP_002507759.1| chromosomal replication initiator protein DnaA [Halothermothrix orenii H 168] gi|219992161|gb|ACL68764.1| chromosomal replication initiator protein DnaA [Halothermothrix orenii H 168] Length = 463 Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 158/460 (34%), Positives = 271/460 (58%), Gaps = 29/460 (6%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S++K ++ + +WF + HS+++N + + VP +F+K W+++RYLE I ++ + + Sbjct: 17 SKIKEKLSNPSFRTWFSDTEAHSLVNNQLIVKVPNDFIKDWLESRYLELIEEVIKNLTNS 76 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + +L+ L ++ + T+ + N K+ I ++P ++ Sbjct: 77 NWKI-VLMSPEELDELDNKDRARVETRDKVKSKNNKKNSNIEIPNGLNP--------KYT 127 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+QAIA+ + Sbjct: 128 FDTFVVGNSNRFAHAASLAVAEAPARAY-----NPLFIYGDVGLGKTHLMQAIAHFILDH 182 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 P+ +VVY+++E F +AI+D+ + ++ RNID+LL+DD+QFL GK Q EF H Sbjct: 183 NPDKKVVYVSSETFTNELINAIKDDRTVEFRNKYRNIDILLVDDIQFLAGKERTQEEFFH 242 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 NSL ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + + Sbjct: 243 TFNSLHEANKQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRIAILRKKADL 302 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLS 398 E P EV++++A + ++ REL+GA +++ +++ ++ EI A E L Sbjct: 303 EDLEVPN-----EVIIYIANKIQSNIRELEGALIKVI---AYSSLVNREIDIDLAQEALK 354 Query: 399 HLV--NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LV + K++ I+ I+++VA +YN++ D+ S +R + + PRQ+AMYLS+ +T S Sbjct: 355 DLVAKDNNAPKQITIDHIKKVVADYYNLTIEDMDSKKRTQNIAFPRQIAMYLSRELTSSS 414 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 P+IG FG RDHTTV+HA KV K E D+ KK ++ L Sbjct: 415 LPQIGENFGGRDHTTVIHAHNKVTKKYEDDLDFKKMIDKL 454 >gi|283469230|emb|CAQ48441.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ST398] Length = 453 Score = 273 bits (699), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 159/451 (35%), Positives = 257/451 (56%), Gaps = 28/451 (6%) Query: 55 YASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETITK-LFQEEHSRIQGVEILV 111 Y+++ + + +++ IV S+P N W+ +Y E I LF ++ I Sbjct: 23 YSTFLKDTELYTIKDGEAIVLSSIPFN--ANWLNQQYAEIIQAILFDVVGYEVKPHFITT 80 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 +A S +TA+S TK S T ++ +LG++ ++ F TF+ G Sbjct: 81 EELANYSNNETATSKETTKPS---TETTEDNHVLGREQ--------FNAHNTFDTFVIGP 129 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P+ +V+Y Sbjct: 130 GNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIY 184 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDS 290 ++E F F +IRDN ++ RNID+LLIDD+QF+Q K+ Q EF + N L + Sbjct: 185 TSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQN 244 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ E+ KL Sbjct: 245 NKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKI-----EEEKL 299 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKM 409 +I E L ++A + ++ REL+GA +L+ + +T E+ E L ++ ++KK+ Sbjct: 300 DIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQAPKSKKI 359 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDH Sbjct: 360 TIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDH 419 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TTV+HA K+ K L+ D K+EVE L++ I Sbjct: 420 TTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450 >gi|261403877|ref|YP_003240118.1| chromosomal replication initiation protein [Paenibacillus sp. Y412MC10] gi|329925078|ref|ZP_08280022.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. HGF5] gi|261280340|gb|ACX62311.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. Y412MC10] gi|328940197|gb|EGG36529.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. HGF5] Length = 448 Score = 273 bits (698), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 162/466 (34%), Positives = 269/466 (57%), Gaps = 32/466 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++ + S ++ ++ + +WF+ K ++ + V +S PT F W+++RY Sbjct: 1 MESHTSELWQEILSIIQTKLSKPSFDTWFKATKALTINDHSVVISAPTTFAVEWLESRY- 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKT-ASSPSITKLSPINTNISKSPIILGKQT 149 TKL + G ++ VR V +E+T A P+ + SP P+ + + Sbjct: 60 ---TKLVSATVLEVVGKQVDVRFV----IEETKAHEPAPQQPSP--------PLEISGEE 104 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ VGLGK Sbjct: 105 IQ---SHMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGK 156 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + ++ P+ +VVY+++E F F ++IRDN A + ++ RN+D+LLIDD+Q Sbjct: 157 THLMHAIGHYILEHNPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRNVDILLIDDIQ 216 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 217 FLAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPD 276 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PI 387 E R +IL+ + ++ E+ L+I E +M++A + T+ REL+GA ++V S Sbjct: 277 LETRIAILRKK---AKAEN--LDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQD 331 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A E L ++ + + + I+DIQ+ V ++YN+ D + +R + V PRQ+AMY Sbjct: 332 VTTHLAAEALKDIIPSSRPRMITIQDIQQKVGEYYNLRLEDFKARKRTKAVAFPRQIAMY 391 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 LS+ +T S P+IG FG RDHTTV+HA K+ + L+TD L K V Sbjct: 392 LSRELTDYSLPKIGEAFGGRDHTTVIHAHEKITQSLKTDQELFKVV 437 >gi|315497052|ref|YP_004085856.1| chromosomal replication initiator protein dnaa [Asticcacaulis excentricus CB 48] gi|315415064|gb|ADU11705.1| chromosomal replication initiator protein DnaA [Asticcacaulis excentricus CB 48] Length = 473 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 172/476 (36%), Positives = 253/476 (53%), Gaps = 26/476 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E ++T V+S L++++G Y S+ L PT + + W L Sbjct: 10 IQPEMVWTKVASALRHELGEGPYNSYVAPSALRQNPLGDPVLVTPTLYARDWFARNALRR 69 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +L+ + + +E+ R+ K+A +T+ N +P++ + ++ Sbjct: 70 ANELWAQHDPDHRSLELKSRA-EFDDQSKSAPMTPVTRTDSAE-NAPAAPVVSFQDAVAR 127 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTH 211 V G L R F TF+ G N A T ++ +A D H NP+F H G GKTH Sbjct: 128 VAG--LQERLTFETFVPGRGNEFAYTMSRQVATWADGH------FNPVFFHGPYGYGKTH 179 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AIA + R+ + +VVYLTAE F F +++D KD LR+ DLLLIDD+ F+ Sbjct: 180 LLNAIAWEAKARRQDAKVVYLTAEKFTSTFVKSLQDRSTAAFKDELRSADLLLIDDVHFI 239 Query: 272 QGKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q E H L +LL++ K+VV ADRPPS L ++ R+RS L G+ L + D Sbjct: 240 GGKTSSQEELFHTLTALLENNKRVVFTADRPPSHLNEIEARLRSHLSSGLVCALDVADQS 299 Query: 331 MRFSI-------LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 +R I L RL ++QK +VL +A V S REL+GA N L Sbjct: 300 LRMGIIERKLDQLAKRLGVAQKP------QHDVLQFLADRVPGSIRELEGAVNTLAASAG 353 Query: 384 FA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 LT + A LL + +++ +++IQ++ A H+ + + DLLS RR R+V RPR Sbjct: 354 ARLGSLTLDEAMALLQPNLKVSAERRVTVDEIQKLTADHFALKQADLLSERRTRSVARPR 413 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 QVAM+L K T RS+P+IGRRFG RDHTTVLHAV+KVE++L++D + K+VE L R Sbjct: 414 QVAMWLCKQHTTRSYPDIGRRFGGRDHTTVLHAVKKVEELLQSDEQIAKDVEALTR 469 >gi|148378012|ref|YP_001252553.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A str. ATCC 3502] gi|153930843|ref|YP_001382411.1| chromosomal replication initiation protein [Clostridium botulinum A str. ATCC 19397] gi|153935412|ref|YP_001385963.1| chromosomal replication initiation protein [Clostridium botulinum A str. Hall] gi|166201876|sp|A7FPR6|DNAA_CLOB1 RecName: Full=Chromosomal replication initiator protein DnaA gi|166201877|sp|A5HXP7|DNAA_CLOBH RecName: Full=Chromosomal replication initiator protein DnaA gi|148287496|emb|CAL81555.1| chromosomal replication initiator protein [Clostridium botulinum A str. ATCC 3502] gi|152926887|gb|ABS32387.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A str. ATCC 19397] gi|152931326|gb|ABS36825.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A str. Hall] Length = 448 Score = 273 bits (697), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 268/462 (58%), Gaps = 35/462 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ +N + L+VP +F K +++RY + I + S+ Sbjct: 16 IKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYKDLIVNALKLLTSKKY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++ +V + EK + N N KS I++ + + L+ ++ F Sbjct: 76 NIDFIV-----TTEEKIEENQK-------NHNNEKSNIVVNDE-----MSTMLNPKYTFD 118 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P Sbjct: 119 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILHNNP 173 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF+ GK Q EF H Sbjct: 174 KSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFHTF 233 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 234 NALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADVEN 293 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHL 400 LNI EV++++A + ++ REL+GA ++V +F+ + EI A E L + Sbjct: 294 -----LNIPNEVMVYIATKIKSNIRELEGALIRIV---AFSSLTNKEISIDLASEALKDI 345 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 +++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYLS+ +T S P+I Sbjct: 346 ISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYLSRKLTDMSLPKI 405 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G FG RDHTTV+HA K+ L+ D +L+ ++ L + I++ Sbjct: 406 GEEFGGRDHTTVIHAYEKISNNLKKDESLQNAIKELNKRINQ 447 >gi|77917619|ref|YP_355434.1| chromosomal replication initiation protein [Pelobacter carbinolicus DSM 2380] gi|77543702|gb|ABA87264.1| chromosomal replication initiator protein DnaA [Pelobacter carbinolicus DSM 2380] Length = 452 Score = 273 bits (697), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 167/473 (35%), Positives = 273/473 (57%), Gaps = 26/473 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ E I+ LK + P +A+W + ++F V +++V L VP F+ W+K Y T Sbjct: 1 MSMEKIWQKTLDSLKQSLTPQHFATWIKPIRFIGVHNDVVELEVPNRFVLDWLKKHYYGT 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I QE S G ++L KTA P + T+ +P KQ +P Sbjct: 61 I----QECWSNTAGA---AYKISLTVASKTAKEP----VPAAETSPPATPAPKPKQEKTP 109 Query: 153 VFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+SR+ F TF+ GSSN+ A AA ++A + Y NPLFI+ VGLGKT Sbjct: 110 PRANAYNLNSRYTFETFVLGSSNQFASAAATAVANNPATTY-----NPLFIYGGVGLGKT 164 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ A+ NA +K+ P ++V Y T+E FM +++R + R++D+LLIDD+QF Sbjct: 165 HLVNAVGNAILKKNPEMKVCYYTSEKFMNELINSLRYAKMDEFRTKFRSMDVLLIDDVQF 224 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L DS KQ+V +D+ P E+ L+ R+RSR + G+ + D Sbjct: 225 IAGKERTQEEFFHTFNALYDSHKQIVVTSDKFPKEIPGLEERLRSRFEWGLIADIQAPDM 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E + +ILK + E +++ +EV + +A V+++ REL+G ++ S A + Sbjct: 285 ETKQAILKMK-----AEQNGIDLPKEVALFLASAVSSNIRELEGYLVRIGAYASLTATPI 339 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E+L ++ + +++ +E+IQ++VA HY+I +DL S +R++ +V PRQ+AMYL Sbjct: 340 TLSMAQEVLKDIL-VEKRRELTVEEIQKLVATHYSIKISDLKSAKRMKALVLPRQIAMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S+PEIG RFG +DH+T++HA++K+EK ++ D L+ + LK+ +S Sbjct: 399 SRQLTSCSYPEIGERFGGKDHSTIIHAIKKIEKAMDEDYQLRSVINNLKKELS 451 >gi|299820842|ref|ZP_07052731.1| DNA-directed DNA replication initiator protein [Listeria grayi DSM 20601] gi|299817863|gb|EFI85098.1| DNA-directed DNA replication initiator protein [Listeria grayi DSM 20601] Length = 456 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 162/469 (34%), Positives = 260/469 (55%), Gaps = 30/469 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + E+I+ +K + Y +W + HS+ N +S P NF++ W++ Y + I Sbjct: 14 SIEAIWQEALQVVKKNMSKPSYDTWMKSTTAHSLEGNHFIISAPNNFVRDWLEKSYTQFI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + QE I G V+ + EK L I N S K ++P Sbjct: 74 ATILQE----ITGNTYDVQFIDGEQEEKFEYVTPKKHLDDIEENPENS-----KHMLNP- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 R+VF TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 124 -------RYVFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 171 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ + + + N V+YL++E F F S+IRDN + + RN+D+LLIDD+QFL G Sbjct: 172 HAVGHYVQQHKENANVMYLSSEKFTNEFISSIRDNKSEEFRAKYRNVDVLLIDDIQFLAG 231 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 232 KEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 291 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + K D L+I EV++++A + ++ REL+GA ++V S +TA Sbjct: 292 IAILRKK----AKAD-GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAG 346 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + I+ IQ V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 347 LAAEALKDIIPNNKPTVITIKAIQAAVGEYYHVRLEDFKAKKRTKSIAYPRQIAMYLSRE 406 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG FG RDHTTV+HA K+ +++++D+ LK ++ E+ K+L Sbjct: 407 LTDASLPKIGDEFGGRDHTTVIHAHEKITQLIKSDMNLKNDIAEIEKQL 455 >gi|297616215|ref|YP_003701374.1| chromosomal replication initiator protein DnaA [Syntrophothermus lipocalidus DSM 12680] gi|297144052|gb|ADI00809.1| chromosomal replication initiator protein DnaA [Syntrophothermus lipocalidus DSM 12680] Length = 436 Score = 272 bits (696), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 155/460 (33%), Positives = 261/460 (56%), Gaps = 53/460 (11%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ ++GP + WF + +H + N + VP K WI++RYL + ++ E H Sbjct: 16 VRQEIGPTSFEIWFSPVTYHDFVDNRYLIHVPNPLYKEWIESRYLHILERVLSELHREPI 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V +++RS +VE A L+ ++ F Sbjct: 76 FVRLVLRSPE--AVEPGALV--------------------------------LNRKYTFD 101 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SNR A A ++AE S Y NPLFI+ VGLGKTHL+QAI + +++ P Sbjct: 102 TFVVGNSNRFAHAACYAVAEAPSDSY-----NPLFIYGGVGLGKTHLMQAIGHHILRKDP 156 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 + ++VY+++E F +IRD ++ R++DLLL+DD+QF+ GK Q EF H Sbjct: 157 SYKIVYVSSEQFTNDLIDSIRDRKTAEFRNKYRSVDLLLVDDIQFVAGKEQTQEEFFHTF 216 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ+V ++DRPP ++ +L+ R+RSR + G+ + D+E R +IL+ + +Q Sbjct: 217 NALYEANKQLVISSDRPPRDIPTLEDRLRSRFEWGLITDIQPPDFETRLAILRKK---AQ 273 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHL 400 E+ N+ +V+ ++A + ++ REL+GA ++V ++A I +T E+A++ L + Sbjct: 274 LEN--FNVPNDVMSYIADYIQSNIRELEGALIRIV---AYANISNQPVTLELAEQTLKDV 328 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + G T+ + ++ I+ VA+++ + +L+S RR R +V PRQ+AM+L + MTP SFP+I Sbjct: 329 LALGNTRIITMQAIKETVAEYFGLKEEELISKRRTRHLVFPRQIAMFLCREMTPSSFPQI 388 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 G FG RDHTT LHA K+ ++ D +L K V E+ K+L Sbjct: 389 GEEFGGRDHTTALHAYEKISSDIQHDRSLLKIVTEIAKKL 428 >gi|332971204|gb|EGK10167.1| DNA-directed DNA replication initiator protein DnaA [Desmospora sp. 8437] Length = 460 Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 266/475 (56%), Gaps = 30/475 (6%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 + ++ + + ++ R++ ++ + +W Q + + + ++ P F + W+++R Sbjct: 9 KPVDTHIQELWAQALERIQGKLSKPSFETWLQATEAVDFRDDTLVVTAPNEFARDWLESR 68 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y + QE + G++ + S P E+ A++ S + P + Sbjct: 69 YANLVRDTLQEVTGSVIGIQFITHSSIRPDGEEEAAASSE------KIHFQDDP----PK 118 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T+ L+SR+ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLG Sbjct: 119 TM-------LNSRYTFDTFVIGSGNRFAHAASLAVAEAPAKSY-----NPLFIYGGVGLG 166 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI N + RVVYL++E F F ++IRDN A + ++ RN+D+LLIDD+ Sbjct: 167 KTHLMHAIGNYVQSHSTHTRVVYLSSETFTNEFINSIRDNRADDFRNRYRNVDILLIDDI 226 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L +KQ+V ++DRPP + +L+ R+RSR + G+ + Sbjct: 227 QFLAGKEQTQEEFFHTFNALHGESKQIVISSDRPPKAIPTLEDRLRSRFEWGLITDIQPP 286 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 D E R +IL+ + AI+ ++ ++N N EV+ +A V T+ REL+GA ++V + Sbjct: 287 DLETRIAILRKK-AIA--DNLEIN-NSEVMAFIADRVETNIRELEGALIRVVAYSALTNQ 342 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 P+ T E+A E L +++ + + + I+DIQ+ V +Y + DL +R + V PRQ+A Sbjct: 343 PV-TVELAAEALKDIISDSKPRVIGIQDIQQEVCAYYRLRMEDLKGKKRTKNVALPRQIA 401 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + +T S P+IG FG RDHTTV+HA K+ + L D +L++ VE L+R I Sbjct: 402 MYLCRELTDSSLPKIGEEFGGRDHTTVIHAHEKITRTLSMDRSLQQAVEDLQRRI 456 >gi|82749778|ref|YP_415519.1| chromosomal replication initiation protein [Staphylococcus aureus RF122] gi|123727433|sp|Q2YUP1|DNAA_STAAB RecName: Full=Chromosomal replication initiator protein DnaA gi|82655309|emb|CAI79689.1| chromosomal replicator initiator protein [Staphylococcus aureus RF122] Length = 453 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 158/451 (35%), Positives = 256/451 (56%), Gaps = 28/451 (6%) Query: 55 YASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETITK-LFQEEHSRIQGVEILV 111 Y+++ + + +++ IV S+P N W+ +Y E I LF ++ I Sbjct: 23 YSTFLKDTELYTIKDGEAIVLSSIPFN--ANWLNQQYAEIIQAILFDVVGYEVKPHFITT 80 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 +A S +TA+ TK S T ++ +LG++ ++ F TF+ G Sbjct: 81 EELANYSNNETATPKETTKPS---TETTEDNHVLGREQ--------FNAHNTFDTFVIGP 129 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P+ +V+Y Sbjct: 130 GNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIY 184 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDS 290 ++E F F +IRDN ++ RNID+LLIDD+QF+Q K+ Q EF + N L + Sbjct: 185 TSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQN 244 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ E+ KL Sbjct: 245 NKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKI-----EEEKL 299 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKM 409 +I E L ++A + ++ REL+GA +L+ + +T E+ E L ++ ++KK+ Sbjct: 300 DIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQAPKSKKI 359 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDH Sbjct: 360 TIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDH 419 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TTV+HA K+ K L+ D K+EVE L++ I Sbjct: 420 TTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450 >gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu50] gi|15925706|ref|NP_373239.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus N315] gi|21281730|ref|NP_644816.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MW2] gi|49484913|ref|YP_042134.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651109|ref|YP_184912.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus COL] gi|87161673|ref|YP_492723.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193824|ref|YP_498609.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266448|ref|YP_001245391.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus JH9] gi|150392481|ref|YP_001315156.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus JH1] gi|151220213|ref|YP_001331036.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978332|ref|YP_001440591.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu3] gi|161508267|ref|YP_001573926.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730400|ref|ZP_04864565.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733838|ref|ZP_04868003.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus TCH130] gi|254663935|ref|ZP_05143407.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793539|ref|ZP_05642518.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9781] gi|258411155|ref|ZP_05681434.1| replication initiation protein DnaA [Staphylococcus aureus A9763] gi|258420941|ref|ZP_05683875.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9719] gi|258438580|ref|ZP_05689803.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A9299] gi|258443964|ref|ZP_05692302.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A8115] gi|258446220|ref|ZP_05694380.1| replication initiation protein dnaA [Staphylococcus aureus A6300] gi|258449121|ref|ZP_05697227.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A6224] gi|258451366|ref|ZP_05699397.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5948] gi|258454401|ref|ZP_05702369.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5937] gi|262049433|ref|ZP_06022305.1| chromosomal replicator initiator protein [Staphylococcus aureus D30] gi|262051894|ref|ZP_06024109.1| chromosomal replicator initiator protein [Staphylococcus aureus 930918-3] gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus ED98] gi|282894280|ref|ZP_06302510.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8117] gi|282902632|ref|ZP_06310525.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus C160] gi|282918069|ref|ZP_06325819.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus D139] gi|282920720|ref|ZP_06328439.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9765] gi|282921291|ref|ZP_06329009.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C427] gi|282927751|ref|ZP_06335365.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A10102] gi|283767791|ref|ZP_06340706.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus H19] gi|284023038|ref|ZP_06377436.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus 132] gi|294849829|ref|ZP_06790569.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9754] gi|296275686|ref|ZP_06858193.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MR1] gi|297209451|ref|ZP_06925849.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245900|ref|ZP_06929762.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8796] gi|300911475|ref|ZP_07128924.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH70] gi|56748673|sp|Q6GD89|DNAA_STAAS RecName: Full=Chromosomal replication initiator protein DnaA gi|56749818|sp|P68865|DNAA_STAAM RecName: Full=Chromosomal replication initiator protein DnaA gi|56749819|sp|P68866|DNAA_STAAN RecName: Full=Chromosomal replication initiator protein DnaA gi|56749820|sp|P68867|DNAA_STAAU RecName: Full=Chromosomal replication initiator protein DnaA gi|56749821|sp|P68868|DNAA_STAAW RecName: Full=Chromosomal replication initiator protein DnaA gi|71151805|sp|Q5HJZ5|DNAA_STAAC RecName: Full=Chromosomal replication initiator protein DnaA gi|123291872|sp|Q2G2H5|DNAA_STAA8 RecName: Full=Chromosomal replication initiator protein DnaA gi|123736033|sp|Q2FKQ5|DNAA_STAA3 RecName: Full=Chromosomal replication initiator protein DnaA gi|166215334|sp|A7WWM4|DNAA_STAA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|172048750|sp|A6QD41|DNAA_STAAE RecName: Full=Chromosomal replication initiator protein DnaA gi|189083281|sp|A6TXF1|DNAA_STAA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083282|sp|A5INP2|DNAA_STAA9 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083283|sp|A8YYS4|DNAA_STAAT RecName: Full=Chromosomal replication initiator protein DnaA gi|1694677|dbj|BAA13755.1| DnaA [Staphylococcus aureus] gi|13699918|dbj|BAB41217.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus N315] gi|14245768|dbj|BAB56163.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203165|dbj|BAB93866.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus MW2] gi|49243356|emb|CAG41773.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MSSA476] gi|57285295|gb|AAW37389.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus COL] gi|58578564|dbj|BAD89355.1| DnaA [Staphylococcus aureus] gi|87127647|gb|ABD22161.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201382|gb|ABD29192.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739517|gb|ABQ47815.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JH9] gi|149944933|gb|ABR50869.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JH1] gi|150373013|dbj|BAF66273.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus str. Newman] gi|156720467|dbj|BAF76884.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367076|gb|ABX28047.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725880|gb|EES94609.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728141|gb|EES96870.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus TCH130] gi|257787511|gb|EEV25851.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9781] gi|257840040|gb|EEV64505.1| replication initiation protein DnaA [Staphylococcus aureus A9763] gi|257843131|gb|EEV67546.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9719] gi|257848139|gb|EEV72131.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A9299] gi|257850848|gb|EEV74792.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A8115] gi|257855046|gb|EEV77989.1| replication initiation protein dnaA [Staphylococcus aureus A6300] gi|257857554|gb|EEV80449.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A6224] gi|257860896|gb|EEV83713.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5948] gi|257863495|gb|EEV86255.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5937] gi|259160221|gb|EEW45250.1| chromosomal replicator initiator protein [Staphylococcus aureus 930918-3] gi|259162430|gb|EEW47000.1| chromosomal replicator initiator protein [Staphylococcus aureus D30] gi|262073981|gb|ACY09954.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus ED98] gi|282315706|gb|EFB46090.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C427] gi|282318354|gb|EFB48714.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus D139] gi|282590511|gb|EFB95589.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A10102] gi|282594128|gb|EFB99116.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9765] gi|282597091|gb|EFC02050.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus C160] gi|282763325|gb|EFC03455.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8117] gi|283461670|gb|EFC08754.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus H19] gi|285815728|gb|ADC36215.1| Chromosomal replication initiator protein DnaA [Staphylococcus aureus 04-02981] gi|294823377|gb|EFG39806.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9754] gi|296885912|gb|EFH24847.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177265|gb|EFH36518.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8796] gi|298693323|gb|ADI96545.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ED133] gi|300887654|gb|EFK82850.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH70] gi|302331773|gb|ADL21966.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JKD6159] gi|312828564|emb|CBX33406.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129544|gb|EFT85536.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS03] gi|315197919|gb|EFU28252.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS01] gi|320141418|gb|EFW33261.1| replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144401|gb|EFW36166.1| replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA177] gi|323439698|gb|EGA97416.1| chromosomal replication initiation protein [Staphylococcus aureus O11] gi|323443271|gb|EGB00888.1| chromosomal replication initiation protein [Staphylococcus aureus O46] gi|329725589|gb|EGG62068.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21172] gi|329731888|gb|EGG68248.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21189] gi|329732572|gb|EGG68922.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21193] Length = 453 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 158/451 (35%), Positives = 256/451 (56%), Gaps = 28/451 (6%) Query: 55 YASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETITK-LFQEEHSRIQGVEILV 111 Y+++ + + +++ IV S+P N W+ +Y E I LF ++ I Sbjct: 23 YSTFLKDTELYTIKDGEAIVLSSIPFN--ANWLNQQYAEIIQAILFDVVGYEVKPHFITT 80 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 +A S +TA+ TK S T ++ +LG++ ++ F TF+ G Sbjct: 81 EELANYSNNETATPKETTKPS---TETTEDNHVLGREQ--------FNAHNTFDTFVIGP 129 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P+ +V+Y Sbjct: 130 GNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIY 184 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDS 290 ++E F F +IRDN ++ RNID+LLIDD+QF+Q K+ Q EF + N L + Sbjct: 185 TSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQN 244 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ E+ KL Sbjct: 245 NKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKI-----EEEKL 299 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKM 409 +I E L ++A + ++ REL+GA +L+ + +T E+ E L ++ ++KK+ Sbjct: 300 DIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQAPKSKKI 359 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDH Sbjct: 360 TIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDH 419 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TTV+HA K+ K L+ D K+EVE L++ I Sbjct: 420 TTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450 >gi|49482254|ref|YP_039478.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MRSA252] gi|221141516|ref|ZP_03566009.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424197|ref|ZP_05600626.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 55/2053] gi|257426874|ref|ZP_05603276.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 65-1322] gi|257429510|ref|ZP_05605897.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 68-397] gi|257432157|ref|ZP_05608520.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus E1410] gi|257435118|ref|ZP_05611169.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M876] gi|258423237|ref|ZP_05686129.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9635] gi|282907048|ref|ZP_06314896.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus Btn1260] gi|282910027|ref|ZP_06317835.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912275|ref|ZP_06320071.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WBG10049] gi|282912915|ref|ZP_06320707.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M899] gi|282922543|ref|ZP_06330233.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C101] gi|283959485|ref|ZP_06376926.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus A017934/97] gi|293497968|ref|ZP_06665822.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 58-424] gi|293511558|ref|ZP_06670252.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M809] gi|293550167|ref|ZP_06672839.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M1015] gi|295429298|ref|ZP_06821920.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589200|ref|ZP_06947841.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus MN8] gi|304379949|ref|ZP_07362678.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56748687|sp|Q6GKU4|DNAA_STAAR RecName: Full=Chromosomal replication initiator protein DnaA gi|49240383|emb|CAG39029.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA252] gi|257273215|gb|EEV05317.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 55/2053] gi|257276505|gb|EEV07956.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 65-1322] gi|257279991|gb|EEV10578.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 68-397] gi|257283036|gb|EEV13168.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus E1410] gi|257285714|gb|EEV15830.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M876] gi|257846566|gb|EEV70588.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9635] gi|269939527|emb|CBA12169.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus TW20] gi|282314764|gb|EFB45150.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C101] gi|282323015|gb|EFB53334.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M899] gi|282323971|gb|EFB54287.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WBG10049] gi|282326093|gb|EFB56398.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329947|gb|EFB59468.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus Btn1260] gi|283789077|gb|EFC27904.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus A017934/97] gi|290919214|gb|EFD96290.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M1015] gi|291096899|gb|EFE27157.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 58-424] gi|291465516|gb|EFF08048.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M809] gi|295127057|gb|EFG56701.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577711|gb|EFH96424.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus MN8] gi|302749912|gb|ADL64089.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341529|gb|EFM07439.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436858|gb|ADQ75929.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH60] gi|315195227|gb|EFU25615.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS00] gi|329312724|gb|AEB87137.1| Chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus T0131] Length = 453 Score = 271 bits (694), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 158/451 (35%), Positives = 256/451 (56%), Gaps = 28/451 (6%) Query: 55 YASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETITK-LFQEEHSRIQGVEILV 111 Y+++ + + +++ IV S+P N W+ +Y E I LF ++ I Sbjct: 23 YSTFLKDTELYTIKDGEAIVLSSIPFN--ANWLNQQYAEIIQAILFDVVGYEVKPHFITT 80 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 +A S +TA+ TK S T ++ +LG++ ++ F TF+ G Sbjct: 81 EELANYSNNETATPKEATKPS---TETTEDNHVLGREQ--------FNAHNTFDTFVIGP 129 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P+ +V+Y Sbjct: 130 GNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIY 184 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDS 290 ++E F F +IRDN ++ RNID+LLIDD+QF+Q K+ Q EF + N L + Sbjct: 185 TSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQN 244 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ E+ KL Sbjct: 245 NKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYETRMAILQKKI-----EEEKL 299 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKM 409 +I E L ++A + ++ REL+GA +L+ + +T E+ E L ++ ++KK+ Sbjct: 300 DIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITTELTAEALKDIIQAPKSKKI 359 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDH Sbjct: 360 TIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDH 419 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TTV+HA K+ K L+ D K+EVE L++ I Sbjct: 420 TTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450 >gi|295406865|ref|ZP_06816669.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8819] gi|294968330|gb|EFG44355.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8819] Length = 453 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 157/433 (36%), Positives = 247/433 (57%), Gaps = 26/433 (6%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITK-LFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT 129 IV S+P N W+ +Y E I LF ++ I +A S +TA+ T Sbjct: 41 IVLSSIPFN--ANWLNQQYAEIIQAILFDVVGYEVKPHFITTEELANYSNNETATPKETT 98 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 K S T ++ +LG++ ++ F TF+ G NR A+ ++AE + Sbjct: 99 KPS---TETTEDNHVLGREQ--------FNAHNTFDTFVIGPGNRFPHAASLAVAEAPAK 147 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLFI+ VGLGKTHL+ AI + + P+ +V+Y ++E F F +IRDN Sbjct: 148 AY-----NPLFIYGGVGLGKTHLMHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNE 202 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 ++ RNID+LLIDD+QF+Q K+ Q EF + N L + KQ+V ++DRPP E+ L Sbjct: 203 GEAFRERYRNIDVLLIDDIQFIQNKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQL 262 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+RSR + G+ V + DYE R +IL+ ++ E+ KL+I E L ++A + ++ Sbjct: 263 EDRLRSRFEWGLIVDITPPDYETRMAILQKKI-----EEEKLDIPPEALNYIANQIQSNI 317 Query: 369 RELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +L+ + +T E+ E L ++ ++KK+ I+DIQ++V ++YN+ Sbjct: 318 RELEGALTRLLAYSQLLGKPITTELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIE 377 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA K+ K L+ D Sbjct: 378 DFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDP 437 Query: 488 TLKKEVELLKRLI 500 K+EVE L++ I Sbjct: 438 IFKQEVENLEKEI 450 >gi|254417773|ref|ZP_05031497.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] gi|196183950|gb|EDX78926.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] Length = 479 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 164/476 (34%), Positives = 257/476 (53%), Gaps = 27/476 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ S RL+ ++G ++S+ + L PT + + W++ L + + Sbjct: 14 DRIWNEASVRLRAEIGDGPFSSYIAPSAVRVDSSGQLILVTPTAYARDWVRKNALRRMNE 73 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII--LGKQTISP- 152 L+ G++ L R + + + S+P + + N + +P + T+ P Sbjct: 74 LWL-------GLDGLNRRLDVRCRAEVGSAPPASAVIAGNV-LDATPRLAAFASPTVPPI 125 Query: 153 ------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASV 205 V + L R F +F+EG N AL A+ +A D H NP+F Sbjct: 126 ADGARAVRAAGLQDRLTFDSFVEGQGNAFALAIAKQVASWADGH------FNPVFFCGPY 179 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GKTHLL AIA + + +P +VVYLTAE F+ F A++D K+SLR+ D+LL+ Sbjct: 180 GYGKTHLLNAIAWEAQRLRPEAKVVYLTAERFLSTFVKAMQDRSTAAFKESLRSADMLLL 239 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q E L +L++ K++V +ADR P L ++PR+RS L G++ P+ Sbjct: 240 DDVQFVGGKTSTQEELLSTLTALIEDGKRIVFSADRAPMALTEVEPRLRSHLAAGLTCPV 299 Query: 325 GLHDYEMRFSILKNRL-AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR-H 382 D E++ ++ +NRL A+S + EVL + S REL+GA N L Sbjct: 300 EAGDRELKIAVAQNRLKALSALGVVQGEAAPEVLAQLVDRTPGSMRELEGAVNTLAAAAG 359 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 S ++ + A LL + G +++ +++IQ+ VA H+N+ + DLLS RR R+V RPR Sbjct: 360 SRLATVSVDEASILLGAALRGGPERRITVDEIQKTVADHFNLKQADLLSERRTRSVARPR 419 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Q+AMYL K T RS+P+IGRRFG RDHTTVLH VRK+E+++ D + ++VE L R Sbjct: 420 QMAMYLCKQHTTRSYPDIGRRFGGRDHTTVLHGVRKIEELMAQDDQIARDVEALTR 475 >gi|172056046|ref|YP_001812506.1| chromosomal replication initiator protein DnaA [Exiguobacterium sibiricum 255-15] gi|226735812|sp|B1YGB2|DNAA_EXIS2 RecName: Full=Chromosomal replication initiator protein DnaA gi|171988567|gb|ACB59489.1| chromosomal replication initiator protein DnaA [Exiguobacterium sibiricum 255-15] Length = 464 Score = 271 bits (693), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 145/445 (32%), Positives = 252/445 (56%), Gaps = 14/445 (3%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y W + + ++ + +S P F W++ +YL + +E ++ + Sbjct: 26 YDMWLKSTEGVTLNGTTLIVSAPAAFTVTWLERQYLSLLEDTVEEVTGSRLDIQFIEEGQ 85 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 A +++ + +++P T K+P + +S + L+ ++ F TF+ GS NR Sbjct: 86 AKHMLDRQNEEVEVMEVAPAKTKAQKTPKSSDELVMSEL--GQLNEKYTFDTFVIGSGNR 143 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI ++ ++ Y+++ Sbjct: 144 FAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGQYVQDQKLGTKIAYVSS 198 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F F ++IRDN + ++ RNID+LLIDD+QFL GK Q EF H N+L + KQ Sbjct: 199 EQFTNDFINSIRDNKTVQFRNKYRNIDVLLIDDIQFLAGKEQTQEEFFHTFNALHNDQKQ 258 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Q L+++ Sbjct: 259 IIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKANAEQ-----LDVS 313 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIE 412 EV++++A + T+ REL+GA +++ + + + +A E L +++ E +K+ I Sbjct: 314 NEVMLYIASQIDTNIRELEGALTRVIAYANLVGRTIDPNVAAEALHNIMPASEPRKVTIR 373 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 DIQ V+KH+N+ +DL + +R +++ PRQ+AMYLS+ MT S P+IG FG RDHTTV Sbjct: 374 DIQESVSKHFNLPFDDLKAKKRTKSIAFPRQIAMYLSREMTESSLPKIGEEFGGRDHTTV 433 Query: 473 LHAVRKVEKMLETDITLKKEVELLK 497 +HA K+ ++++D K +E +K Sbjct: 434 IHAHEKISTLVKSDGETGKVIEQIK 458 >gi|148283998|ref|YP_001248088.1| chromosomal replication initiation protein [Orientia tsutsugamushi str. Boryong] gi|146739437|emb|CAM79067.1| chromosomal replication initiator protein [Orientia tsutsugamushi str. Boryong] Length = 469 Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 168/485 (34%), Positives = 279/485 (57%), Gaps = 31/485 (6%) Query: 22 PNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL 81 PN D E+ +++ V L++ G V+ SWF ++ + + LS PTNF Sbjct: 8 PNTTKD----ELYFHELWSSVKRDLRHHYGEAVFKSWFSKMNMVDFTDSYIKLSAPTNFT 63 Query: 82 KAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS 141 + WIK Y ++I +L S I V+I+ ++ S S + + Sbjct: 64 RDWIKANYFDSIRQLLAYYDSSITRVDIVTSAID--------HQNSDLAFSTQQNTDNNN 115 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 K + + +F S LD RF F F+ G N +A AA ++AE + + NPLF+ Sbjct: 116 QQYSTKSSNNVIFSSTLDPRFTFDNFVVGRPNELAYAAATTVAESPT---AVAKSNPLFL 172 Query: 202 HASVGLGKTHLLQAIA----NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 + VGLGKTHL+ AIA N+S KR +V+Y++AE FM++F ++R+ ++ K+ Sbjct: 173 YGGVGLGKTHLMHAIAWHIQNSSSKR----KVIYMSAEKFMYQFVQSLRNKDVMSFKEQF 228 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D+L+IDD+QF+ GK Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL Sbjct: 229 RSVDVLMIDDIQFICGKDSTQEEFFHTFNALIDNKRQMVISCDRSPSDLDNIEERIKSRL 288 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G+ + YE+R IL++++ E + +VL +A +T++ REL+GA N Sbjct: 289 GWGLVADVHSTTYELRLGILQSKV-----EQLATAVPLKVLEFLAAKITSNVRELEGALN 343 Query: 377 QLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 +++ + +T E E+L L+ + + K + I+ IQ+ VA+ YNI +D+ S+RR Sbjct: 344 KVIAHSTLVGYEITIENTQEILRDLLRSNQ-KTITIDSIQKKVAERYNIKISDMSSSRRS 402 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R+V RPRQ+AMYL+K +T +S +IG+ FG +DHTTV+HA++ VE + + + + EV L Sbjct: 403 RSVTRPRQLAMYLAKRLTSKSLVDIGKAFGKKDHTTVMHAIKTVEDLSKQEQEFEDEVRL 462 Query: 496 LKRLI 500 L R++ Sbjct: 463 LMRIL 467 >gi|253573854|ref|ZP_04851196.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. oral taxon 786 str. D14] gi|251846331|gb|EES74337.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. oral taxon 786 str. D14] Length = 448 Score = 271 bits (692), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 263/468 (56%), Gaps = 35/468 (7%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 +D E+ + I +I++++L + +WF+ K S+ + +S PT F W+ Sbjct: 1 MDSHTSEI-WQHILSIINTKLSKPS----FDTWFKATKVVSLTDQSIVISAPTTFAVEWL 55 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 ++RY + + E + V ++ A P + P +P+ + S S + Sbjct: 56 ESRYTKLVATTVFEVIGKQVDVSFVIEESAPPEQAQVYKEPP----APVPSEESVSHM-- 109 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ V Sbjct: 110 ------------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPARAY-----NPLFLYGGV 152 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ AI + ++ P+ +VVY+++E F F ++IRDN A + ++ RNID+LLI Sbjct: 153 GLGKTHLMHAIGHYILEHSPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRNIDILLI 212 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 213 DDIQFLAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDI 272 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + ++ E+ L+I E +M++A + T+ REL+GA ++V S Sbjct: 273 QPPDLETRIAILRKK---AKAEN--LDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSL 327 Query: 385 A-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T +A E L ++ + K + I+DIQ+ V ++YN+ +D + +R + + PRQ Sbjct: 328 INQDITTHLAAEALKDIIPSSRPKMITIQDIQQKVGEYYNLKLDDFKARKRTKAIAFPRQ 387 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 +AMYL++ +T S P+IG FG RDHTTV+HA K+ + L+TD L K Sbjct: 388 IAMYLARELTDFSLPKIGDAFGGRDHTTVIHAHEKITQQLKTDQELYK 435 >gi|329847538|ref|ZP_08262566.1| chromosomal replication initiator protein DnaA [Asticcacaulis biprosthecum C19] gi|328842601|gb|EGF92170.1| chromosomal replication initiator protein DnaA [Asticcacaulis biprosthecum C19] Length = 433 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 159/429 (37%), Positives = 237/429 (55%), Gaps = 15/429 (3%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP 133 L PT + + WI + +L+Q+ + ++IL R + ++ + +T L P Sbjct: 11 LVTPTAYARDWISKNAIRRAQELWQQHDPDARILDILCR---VDYDDQVRTGGIVTALVP 67 Query: 134 INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYT 192 + P++ + + S L R F TF+ G N A T ++ +A D H Sbjct: 68 STPVAASEPVV--EAVVPATRISGLQDRLTFDTFVPGRGNEFAYTMSRQVASWADGH--- 122 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NP+F H G GKTHLL AI + ++P+ R+VYLTAE F F A+ D Sbjct: 123 ---FNPVFFHGPYGYGKTHLLNAIGWEAQAKRPDARIVYLTAEKFTSTFVKALMDKSTSA 179 Query: 253 LKDSLRNIDLLLIDDMQFLQGKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 KD +R DLLL+DD+ F+ GK Q E H L SL+++ ++VV ADRPP++L ++ R Sbjct: 180 FKDEVRGADLLLVDDVHFIGGKTSSQEELFHTLTSLIENNRRVVFTADRPPTQLNEIEAR 239 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLA-ISQKEDPKLNINEEVLMHVARTVTTSGRE 370 +RS L G+ L + D +R I++ +L +SQ+ EV+ +A V S RE Sbjct: 240 LRSHLSSGLVCALDVADQSLRMGIVERKLGQLSQRLGVAQCPRAEVMQFLADRVPGSIRE 299 Query: 371 LDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 L+GA N LV LT E A LL + +++ +++IQ++ A H+ + + DL Sbjct: 300 LEGAVNTLVASAGARLGSLTLEEAMALLQPNLKVAVERRVTVDEIQKLTADHFGLKQADL 359 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 LS RR R+V RPRQVAM+L K T RS+P+IGRRFG RDHTTVLHAV+KVE++L+ D + Sbjct: 360 LSERRTRSVARPRQVAMWLCKQHTTRSYPDIGRRFGGRDHTTVLHAVKKVEELLQADDQI 419 Query: 490 KKEVELLKR 498 ++VE L R Sbjct: 420 ARDVEALTR 428 >gi|295687460|ref|YP_003591153.1| chromosomal replication initiator protein DnaA [Caulobacter segnis ATCC 21756] gi|295429363|gb|ADG08535.1| chromosomal replication initiator protein DnaA [Caulobacter segnis ATCC 21756] Length = 491 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 171/479 (35%), Positives = 249/479 (51%), Gaps = 26/479 (5%) Query: 35 CE---SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 CE ++++ V LK ++G + SW + L PT + WI+ Sbjct: 20 CEPATAVWSKVCVALKRELGDAAFGSWIAPAILREAASGDIVLVTPTGIARDWIRRSAWR 79 Query: 92 TITKLFQEEHSRIQGVEILVR--SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I +L+ + +++ R AL V AS+ T PI + P+ Sbjct: 80 RIGELWAANDPTGRRIDLKSRLEFEALAGVYVEASAKPATAAEPIEIVL---PVSTDAPA 136 Query: 150 ISPVFG-SP----LDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHA 203 ++P SP L RF F TF+ G +N A A+ IA D H NP+ H Sbjct: 137 VAPTSAKSPRTQGLQERFTFETFVPGPANEFAHAVARRIANWADGH------FNPVLFHG 190 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 G GKTHLL A+A +++ P RVVYLTAE F+ F A+ D K+ LR DLL Sbjct: 191 PYGFGKTHLLNALAWEAMRNAPEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLL 250 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+ F+ GK Q E H L +L++ ++VV +ADRPPS + +D +RS L G+ Sbjct: 251 IIDDVHFIAGKQSTQEELFHTLTALVEEGRRVVFSADRPPSAMTEMDAHLRSHLSAGLVC 310 Query: 323 PLGLHDYEMRFSILKNRL-AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 L D +R IL+ ++ +S + + +VL +A T S REL+GA N L R Sbjct: 311 GLEPADRSLRLGILERKIQTLSAAHGFEPTMRPDVLQFLADRFTDSVRELEGALNTLSAR 370 Query: 382 --HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + + E+ L HL +GE K++ I+DIQ+ ++HY + + DLLS RR R V Sbjct: 371 AGEGLSRMTLEEVQAILRPHL-RSGE-KRITIDDIQKATSEHYGMKQADLLSERRNRAVA 428 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ AM+L+K +T RS P+IGRRFG RDHTTVLHAVR++E + D L +++E + R Sbjct: 429 RPRQAAMWLAKQLTTRSLPDIGRRFGGRDHTTVLHAVRRIEALRAEDSALNQDLETITR 487 >gi|302872923|ref|YP_003841556.1| chromosomal replication initiator protein DnaA [Clostridium cellulovorans 743B] gi|307687876|ref|ZP_07630322.1| chromosomal replication initiation protein [Clostridium cellulovorans 743B] gi|302575780|gb|ADL49792.1| chromosomal replication initiator protein DnaA [Clostridium cellulovorans 743B] Length = 451 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 264/478 (55%), Gaps = 34/478 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V+ I+ + +K ++ + +W + + + + VP +F + +++RY Sbjct: 1 MNVHLSDIWDKTLTIIKGELTEVSFNTWIKSITPEYIDDTTITFGVPNDFTRGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + S+ VE + ++ + S P I K I T+ Sbjct: 61 DLVINAINMVTSKKYNVEFKI--ISEDVITSDDSEPKIQKQHII-------------ATV 105 Query: 151 SP-VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 SP S L+ ++ F++F+ G+SNR A A ++AE + Y NPLFI+ VGLGK Sbjct: 106 SPDEMNSVLNPKYTFNSFVIGNSNRFAHAACLAVAESPAKAY-----NPLFIYGGVGLGK 160 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + +K +V Y+++E F ++I+D+ ++ RN+DLLLIDD+Q Sbjct: 161 THLMHAIGHYILKNNSKAKVAYVSSEKFTNELINSIKDDKNEEFRNKYRNVDLLLIDDIQ 220 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 221 FIAGKERTQEEFFHTFNALYDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 +E R +ILK + + KLN+ EVL ++A T+ ++ REL+GA ++V +F+ + Sbjct: 281 FETRIAILKKKADVE-----KLNVPNEVLTYIATTIKSNIRELEGALIRIV---AFSSLT 332 Query: 389 TAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 EI A E L +++ TK++ IE IQ +VA +YN+ D S RR + + PRQ+ Sbjct: 333 NKEISVDLAQEALKDIISNRATKQITIELIQEIVASYYNLKIEDFKSARRTKNIAYPRQI 392 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AM+L + +T S P+IG FG RDHTTV+HA K+ + ++D +LK +E+L + I++ Sbjct: 393 AMFLCRKLTDNSLPKIGEEFGGRDHTTVIHAYEKINEAYKSDESLKNIIEILTKRINQ 450 >gi|170717207|ref|YP_001783356.1| chromosomal replication initiation protein [Haemophilus somnus 2336] gi|168825336|gb|ACA30707.1| chromosomal replication initiator protein DnaA [Haemophilus somnus 2336] Length = 455 Score = 270 bits (691), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 163/460 (35%), Positives = 259/460 (56%), Gaps = 24/460 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S+L++QV + + +W + L+ N++ L P F+K W++N YL ITKL Q+ + Sbjct: 17 SQLQDQVSSNDFTTWLRPLQDDVSESNMI-LYAPNCFIKGWVENHYLTQITKLAQQLLNN 75 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 Q + + ++ P+ + T + T+ + I T + S L+ V Sbjct: 76 DQFM-VKIQDGIKPTEKTTTNVEQKTQNENCHNEI----------TSQQNYRSYLNKNHV 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A AQ +A+ + G + NPLF++ GLGKTHLL A+ N + Sbjct: 125 FDNFVEGKSNQLARAVAQKVAK--NPGEQSA--NPLFLYGGTGLGKTHLLHAVGNGILAN 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 P+ +VVY+ AE FM + A++ + + K R +D LLIDD+QF GK Q EF H Sbjct: 181 NPHAQVVYMHAERFMQSYVKALKSDRMDSFKRFYRTVDALLIDDIQFFAGKDGTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + NSL + +Q++ +DR P E+E ++ R++SR G+SV + + E R +IL + Sbjct: 241 IFNSLFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPELETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ + + EEV M + + T+ REL+GA N++ F +T + E L ++ Sbjct: 296 KKAEEKNMVLPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAITIDFVRETLKDML 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + K + IE+IQ++VA +Y I +DL S RR R + RPRQ+AM L+K +T RS PEIG Sbjct: 356 AL-QDKLVTIENIQKIVADYYRIKISDLKSKRRSRNITRPRQLAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R FGDRDHTTVLHA + + K+ E D ++++ L R +S Sbjct: 415 RNFGDRDHTTVLHACKAIAKLREEDNGIQEDWSNLIRTLS 454 >gi|326789140|ref|YP_004306961.1| chromosomal replication initiator protein DnaA [Clostridium lentocellum DSM 5427] gi|326539904|gb|ADZ81763.1| chromosomal replication initiator protein DnaA [Clostridium lentocellum DSM 5427] Length = 446 Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 152/452 (33%), Positives = 261/452 (57%), Gaps = 37/452 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +WF+ + S+ N + +SV F K + RY+E L+R+ Sbjct: 25 FNTWFKETELLSIEDNTLFISVKNEFTKEILNTRYIE------------------LIRNS 66 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP--LDSRFVFSTFIEGSS 172 AL + K + I + P ++ + + +P L+ R+VF +F+ G+S Sbjct: 67 ALQVLNKDYN---IKFMLPNEQTTTEQKAAKRNEQLQDPLNNPSNLNPRYVFDSFVVGNS 123 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR+A AA +++E + Y NPLF++ VGLGKTHL+ +IA+ + + P+ +++Y Sbjct: 124 NRMAHAAALAVSEAPARAY-----NPLFLYGGVGLGKTHLMHSIAHYILDQNPSAKIIYA 178 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 ++E F ++IRD+ + ++ RNID+LLIDD+QF+ GK Q EF H N+L ++ Sbjct: 179 SSEKFTNELINSIRDDKNESFRNKYRNIDVLLIDDIQFITGKERTQEEFFHTFNALYEAN 238 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ++ ++DRPP E+E+L+ R+RSR + G+ + D E R +IL+ + I L+ Sbjct: 239 KQIIISSDRPPKEIETLEERLRSRFEWGLIADIQSPDLETRIAILRKKAEIES-----LS 293 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKM 409 + E+VL+ +A+TV ++ REL+GA N+++ S PI T E+A+E L L++ K + Sbjct: 294 VPEDVLLFIAKTVISNIRELEGALNRILAFSSLTNKPI-TVELANEALKDLISKDRPKII 352 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 E IQ +VA ++++ +L S++R R + PRQ+AMYL + +T S P+IG +FG RDH Sbjct: 353 TAEYIQEIVATYFHLKPEELKSSKRTRNIAYPRQIAMYLCRKLTDLSLPKIGEKFGGRDH 412 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TT++H K+ + ++TDI L + + L+ I+ Sbjct: 413 TTIIHGFEKISREIQTDIELTQMLNELESKIT 444 >gi|189184480|ref|YP_001938265.1| chromosomal replication initiation protein [Orientia tsutsugamushi str. Ikeda] gi|189181251|dbj|BAG41031.1| chromosomal replication initiator protein DnaA [Orientia tsutsugamushi str. Ikeda] Length = 470 Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 164/469 (34%), Positives = 277/469 (59%), Gaps = 26/469 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 +++ V L++ G V+ SWF ++ + LS PTNF + WIK Y ++I +L Sbjct: 20 LWSNVKRDLRHHYGEAVFKSWFSKMNMVDFTDGYIKLSAPTNFTRDWIKANYFDSIRQLL 79 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 S I ++I+ ++ + + S+ T + +KS + + +F S Sbjct: 80 AYYDSSITSIDIVTSAIDHQNSDLAFSTQQNTDNNNNQQYSTKS-------SNNVIFSST 132 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD RF F F+ G N +A AA ++AE + + NPLF++ VGLGKTHL+ AIA Sbjct: 133 LDPRFTFDNFVVGRPNELAYAAATTVAESPT---AVAKSNPLFLYGGVGLGKTHLMHAIA 189 Query: 218 ----NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 N+S KR +V+Y++AE FM++F ++R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 190 WHIQNSSSKR----KVIYMSAEKFMYQFVQSLRNKDVMSFKEQFRSVDVLMIDDIQFICG 245 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 246 KDSTQEEFFHTFNALIDNKRQMVISCDRSPSDLDNIEERIKSRLGWGLVADVHSTTYELR 305 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 IL++++ E + +VL +A +T++ REL+GA N+++ + +T E Sbjct: 306 LGILQSKV-----EQLATAVPLKVLEFLAAKITSNVRELEGALNKVIAHSTLVGYEITIE 360 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E+L L+ + + K + I+ IQ+ VA+ YNI +D+ S+RR R+V RPRQ+AMYL+K Sbjct: 361 NTQEILRDLLRSNQ-KTITIDSIQKKVAERYNIKISDMSSSRRSRSVTRPRQLAMYLAKR 419 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T +S +IG+ FG +DHTTV+HA++ VE + + + + EV LL R++ Sbjct: 420 LTSKSLVDIGKAFGKKDHTTVMHAIKTVEDLSKQEQEFEDEVRLLMRIL 468 >gi|224477956|ref|YP_002635562.1| chromosomal replication initiation protein [Staphylococcus carnosus subsp. carnosus TM300] gi|254777913|sp|B9DPX4|DNAA_STACT RecName: Full=Chromosomal replication initiator protein DnaA gi|222422563|emb|CAL29377.1| chromosomal replication initiator protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 453 Score = 270 bits (690), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 263/471 (55%), Gaps = 30/471 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQ--RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E I+ V KN++ P Y++WF+ + + + N + V +NF++ ++K +Y + I Sbjct: 4 EEIWDKVLELAKNELTPISYSTWFEPPKTELIDIQENTAIILVESNFVQDFLKKQYTDII 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 L +E + + +P+ +++ + K S + +K P + Q S Sbjct: 64 ADL----------IEKAIGTKLMPNFVIQEDLTEDKQVKDSAKAKSEAK-PDVQAPQNSS 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 113 E---DQFNVHNTFETFVIGPGNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTH 164 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + ++ + +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+ Sbjct: 165 LMHAIGHYVLENNRDAKVIYTSSEKFTNEFIKSIRDNETEQFREKYRNIDVLLIDDIQFI 224 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 225 QNKEQTQEEFFHTFNDLHQTGKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILT 389 R +IL+ +L E+ ++I E L ++A + ++ REL+GA +++ + +T Sbjct: 285 TRMAILQKKL-----EEEDVDIPLESLTYIANQIQSNIRELEGALTRVIAYSRLQNEAIT 339 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ E L ++ T ++KK+ I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS Sbjct: 340 TELTAEALKDIIQTPKSKKITIQDIQKVVGQYYNVRLEDFAAKKRTKSIAYPRQIAMYLS 399 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K++ + D K+EVE L++ I Sbjct: 400 RELTDFSLPKIGEEFGGRDHTTVIHAHMKIQTDMSEDPIFKQEVENLEKEI 450 >gi|114565577|ref|YP_752731.1| initiation of chromosome replication [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336512|gb|ABI67360.1| initiation of chromosome replication [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 436 Score = 270 bits (690), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 171/468 (36%), Positives = 263/468 (56%), Gaps = 52/468 (11%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V + ++G + WF R+KF S NI + VP + K WI++RYL+ + Sbjct: 10 VWNEVLDSMYQEIGSTSFEIWFSRVKFSSFHDNIFCIIVPDSLTKEWIESRYLD----IM 65 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 Q + R L+ S + S+ ++ I+ GK PV S Sbjct: 66 QNKLRR------LIDSRVILSI--------------------RTEILSGKS--DPV--SA 95 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A A ++ E Y NPLFI+ VGLGKTHL+QAI Sbjct: 96 LNPKYTFDTFVVGNSNRFAHAACYAVGESPFKSY-----NPLFIYGGVGLGKTHLMQAIG 150 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + R+PN V+Y+++E F S+I+D+ ++ R+ID+LL+DD+QFL GK Sbjct: 151 HHILSRKPNYLVMYVSSEQFTNDMISSIKDDTTSLFRNKYRSIDVLLVDDIQFLAGKERT 210 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S KQVV ++DRPP + +L+ R+RSR + G+ + D E R +IL Sbjct: 211 QEEFFHTFNTLHESNKQVVISSDRPPRNIPTLEDRLRSRFEWGLITDIQPPDLETRIAIL 270 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +Q E+ LNI VL ++A + ++ REL+GA +LV +FA I L Sbjct: 271 RKK---AQGEN--LNIPYSVLDYIANYIDSNIRELEGALIRLV---AFATINNKPLDMNT 322 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L ++ +K+ IE IQ+ VA HY++ N+++S +R + +V PR +AMYL + + Sbjct: 323 AVEALKDIMPPPRPRKITIETIQKTVAAHYHLEINEIISKKRNKQLVYPRHIAMYLCRKL 382 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T SFP+IG +FG RDHTTV+HA K+ L +D L E+ELL + I Sbjct: 383 TDASFPQIGEQFGGRDHTTVMHAHEKLVNELLSDRELVAEIELLCKKI 430 >gi|254520696|ref|ZP_05132752.1| chromosomal replication initiator protein DnaA [Clostridium sp. 7_2_43FAA] gi|226914445|gb|EEH99646.1| chromosomal replication initiator protein DnaA [Clostridium sp. 7_2_43FAA] Length = 451 Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 161/458 (35%), Positives = 263/458 (57%), Gaps = 29/458 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ NI+ +SVP +F + ++ RY + + + S++ Sbjct: 16 IKGEMSEVSFNTWIKSCEPISISSNIIRISVPNSFTQDILEKRYKDLVVNSIEAACSKVY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 VE +V S + EK I I T++ S L+ ++ F+ Sbjct: 76 TVEFMVASDIQEAEEKEEKKSKIDDRGSI--------------TVNDEMSSLLNPKYTFA 121 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ Sbjct: 122 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYVLQNNS 176 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 N +VVY+++E F +AIRD+ ++ RN+D+LLIDD+QF+ GK Q EF H Sbjct: 177 NAKVVYVSSEKFTNELINAIRDDKNEEFRNKYRNVDILLIDDIQFIAGKERTQEEFFHTF 236 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 237 NALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADVE- 295 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVN 402 KLN+ EV++++A + ++ REL+GA ++V S PI T E+A E L +++ Sbjct: 296 ----KLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNRPI-TVELASEALKDIIS 350 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + + + I+ IQ +VA ++N+ DL S RR R V PRQ+AMYLS+ +T S P+IG Sbjct: 351 NKQNRNVTIDVIQDVVAGYFNLRIEDLKSQRRTRNVAYPRQIAMYLSRKLTDMSLPKIGE 410 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 FG RDHTTV+HA K+ L TD +L+ V ++ K+L Sbjct: 411 EFGGRDHTTVIHAYEKISDSLNTDESLQHTVNDITKKL 448 >gi|58697378|ref|ZP_00372705.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] gi|58536223|gb|EAL59777.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] Length = 345 Score = 269 bits (688), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 144/353 (40%), Positives = 222/353 (62%), Gaps = 21/353 (5%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLL 213 GSPLD RF F F+ G N +A TAA+ +AE +D + NPLF++ VGLGKTHL+ Sbjct: 6 GSPLDPRFTFDNFVVGKPNELAFTAAKRVAESIDP----ILGSNPLFLYGGVGLGKTHLM 61 Query: 214 QAIA-----NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 AIA + S KR +VVYL+AE FM+++ +A+R + K+ R++D+L++DD+ Sbjct: 62 HAIAWHIVNSPSAKR----KVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDV 117 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + Sbjct: 118 QFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINET 177 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 178 TFELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRS 232 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY Sbjct: 233 MTVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMY 291 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K T +S P+IGR FG RDH TV+HAV++VE ++TD E+ LK++ Sbjct: 292 FAKKFTQKSLPDIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEINRLKKMF 344 >gi|168187277|ref|ZP_02621912.1| chromosomal replication initiator protein DnaA [Clostridium botulinum C str. Eklund] gi|169294801|gb|EDS76934.1| chromosomal replication initiator protein DnaA [Clostridium botulinum C str. Eklund] Length = 449 Score = 269 bits (688), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 149/473 (31%), Positives = 273/473 (57%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E +++ + +K ++ + +W + + S+ N + L VP +F + +++RY Sbjct: 1 MNAQLEQLWSKTLNIIKGELTEVSFNTWIKSISPISITENTIKLEVPNDFTRGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I I ++++ ++E + +S I + N S +P I+ + Sbjct: 61 DLI----------INAIKLITSKKY--NIEFSITSEEIFNNNQTNRTKSNNPNIVVNDEM 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 109 TSI----LNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ PN +VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF Sbjct: 160 HLMHAIGHYILQNTPNAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 220 IAGKERTQEEFFHTFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +ILK + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 280 ETRIAILKKKADVEN-----LDIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ + K++ IE IQ +V ++N+ +L S+RR R + PRQ+AMYL Sbjct: 335 SVDLAAEALKDIISSEQNKQVTIELIQDIVCNYFNLKIQELKSSRRTRNIAFPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ +L+ D +L+ ++ L + I+ Sbjct: 395 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNILKKDESLRNVIDDLNKKIT 447 >gi|161486853|ref|NP_780810.2| chromosomal replication initiation protein [Clostridium tetani E88] Length = 454 Score = 269 bits (688), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 269/477 (56%), Gaps = 29/477 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + I+ + +K ++ + +W + ++ + H+ V LSVP +F + + +RY Sbjct: 1 MSTNIKEIWDKTLNIIKGELTEVSFNTWIKSIEPIKIEHDTVFLSVPNDFTRGILDSRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ +E + S S+ + K +P N I + I Sbjct: 61 DLIINALKLITSKKYNIEFFITS--------EESAFTTIKENP-NLKIHNNEI--NNIVT 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 110 SDGMSAMLNPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 164 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ N++VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF Sbjct: 165 HLMHAIGHYILQNNSNVKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQF 224 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 225 IAGKERTQEEFFHTFNALHEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +ILK + + LNI EV++++A + ++ REL+GA ++V +F+ + Sbjct: 285 ETRMAILKKKADVEH-----LNIPNEVMVYIATKIKSNIRELEGALIRIV---AFSSLTN 336 Query: 390 AEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 EI A E L ++++ E+ ++ IE IQ +V+ ++N+ D S+RR R V PRQ+A Sbjct: 337 KEISVDLASEALKDIISSKESNQVTIELIQDIVSSYFNLRVEDFKSSRRTRNVAFPRQIA 396 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYL + +T S P+IG FG RDHTTV+H K+ L+ D +L+K V L I++ Sbjct: 397 MYLCRKLTDNSLPKIGEEFGGRDHTTVIHGYEKISTALKKDDSLQKTVNELTSKINQ 453 >gi|29653365|ref|NP_819057.1| chromosomal replication initiation protein [Coxiella burnetii RSA 493] gi|154706441|ref|YP_001423440.1| chromosomal replication initiation protein [Coxiella burnetii Dugway 5J108-111] gi|161830473|ref|YP_001595901.1| chromosomal replication initiation protein [Coxiella burnetii RSA 331] gi|164685862|ref|ZP_01947694.2| chromosomal replication initiator protein DnaA [Coxiella burnetii 'MSU Goat Q177'] gi|165924211|ref|ZP_02220043.1| chromosomal replication initiator protein DnaA [Coxiella burnetii RSA 334] gi|212211670|ref|YP_002302606.1| chromosomal replication initiation protein [Coxiella burnetii CbuG_Q212] gi|212217689|ref|YP_002304476.1| chromosomal replication initiation protein [Coxiella burnetii CbuK_Q154] gi|38257444|sp|Q83FD8|DNAA_COXBU RecName: Full=Chromosomal replication initiator protein DnaA gi|189044636|sp|A9KEU8|DNAA_COXBN RecName: Full=Chromosomal replication initiator protein DnaA gi|189044637|sp|A9N900|DNAA_COXBR RecName: Full=Chromosomal replication initiator protein DnaA gi|226735796|sp|B6J8S3|DNAA_COXB1 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735797|sp|B6J287|DNAA_COXB2 RecName: Full=Chromosomal replication initiator protein DnaA gi|29540627|gb|AAO89571.1| chromosomal replication initiator protein [Coxiella burnetii RSA 493] gi|154355727|gb|ABS77189.1| chromosomal replication initiator protein [Coxiella burnetii Dugway 5J108-111] gi|161762340|gb|ABX77982.1| chromosomal replication initiator protein DnaA [Coxiella burnetii RSA 331] gi|164601379|gb|EAX31682.2| chromosomal replication initiator protein DnaA [Coxiella burnetii 'MSU Goat Q177'] gi|165916345|gb|EDR34949.1| chromosomal replication initiator protein DnaA [Coxiella burnetii RSA 334] gi|212010080|gb|ACJ17461.1| chromosomal replication initiator protein [Coxiella burnetii CbuG_Q212] gi|212011951|gb|ACJ19331.1| chromosomal replication initiator protein [Coxiella burnetii CbuK_Q154] Length = 451 Score = 269 bits (688), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 166/476 (34%), Positives = 260/476 (54%), Gaps = 42/476 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ L++++ P Y +W + L N + L P F+ WI R+L IT+L Sbjct: 6 SLWDKCLGYLRDEIPPQQYNTWIRPLHAIESKQNGLLLLAPNRFVLDWINERFLNRITEL 65 Query: 97 FQE-----EHSRIQ----GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 E R+Q E+ ++ PS K A+ P+ T +S NI Sbjct: 66 LDELSDTPPQIRLQIGSRSTEMPTKNSHEPSHRKAAAPPAGTTISHTQANI--------- 116 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +S F F +F+EG SN++A AA +AE Y NPLFI+ VGL Sbjct: 117 -----------NSNFTFDSFVEGKSNQLARAAATQVAENPGQAY-----NPLFIYGGVGL 160 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A+ NA +++ + +V+YL +E F+ A++ N K R+++ LLIDD Sbjct: 161 GKTHLMHAVGNAILRKDSSKKVLYLHSERFVADMIKALQHNAMNEFKRFYRSLNALLIDD 220 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF H N+LLD +Q++ DR P E+ L+ R++SR G++V + Sbjct: 221 IQFFAGKDRSQEEFFHTFNALLDGQQQIILTCDRYPKEINGLEERLQSRFGWGLTVAIEP 280 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL +S+ E K+++ EV +A+ + ++ REL+GA +++ F Sbjct: 281 PELETRVAIL-----MSKAEQLKVHLPHEVAFFIAKHIQSNVRELEGALKRVIANAHFTG 335 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ T + + + IE+IQ+ VA++Y I DLL+ RR R+V RPRQ+A Sbjct: 336 QSITVDFTREALKDLL-TLQARLITIENIQKTVAEYYKIKVADLLAKRRNRSVARPRQMA 394 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RKV+++L T + + ++ + L R++S Sbjct: 395 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVKELLATSLDILEDYKNLMRILS 450 >gi|167643974|ref|YP_001681637.1| chromosomal replication initiation protein [Caulobacter sp. K31] gi|189044631|sp|B0T135|DNAA_CAUSK RecName: Full=Chromosomal replication initiator protein DnaA gi|167346404|gb|ABZ69139.1| chromosomal replication initiator protein DnaA [Caulobacter sp. K31] Length = 487 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 169/477 (35%), Positives = 255/477 (53%), Gaps = 23/477 (4%) Query: 33 VNCES---IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 V CE ++ V + LK ++G + SW V + PT + WI+ Sbjct: 19 VACEPAGVVWNKVCTVLKRELGDAAFGSWIAPAVLREGPSGDVVVVTPTGIARDWIRRSA 78 Query: 90 LETITKLFQEEHSRIQGVEILVR----SVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 +++L+ + + +++ R SV E A + I + P+++++ Sbjct: 79 WRRVSELWTANDATGRRLDLKSRLEFESVGGAGYE--AKAEPIEIVLPVSSDVPALAPTN 136 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHAS 204 G + SPV G L RF F TF+ G +N A A+ +A D H NP+ H Sbjct: 137 GSKP-SPVQG--LQERFTFDTFVPGPANEFAHAVARRVASWADGH------FNPVLFHGP 187 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G GKTHLL A+A ++++ P RVVYLTAE F+ F A+ D K+ LR DLL+ Sbjct: 188 YGFGKTHLLNALAWEAMRQAPTKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRGADLLI 247 Query: 265 IDDMQFLQGKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+ F+ GK Q E H L +L++ ++VV ++DR P+ + +D R+RS L G+ Sbjct: 248 IDDVHFIAGKQSSQEELFHTLTALVEDGRRVVFSSDRAPAAMTEMDARLRSHLSAGLVCG 307 Query: 324 LGLHDYEMRFSILKNRL-AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 L D +R IL+ +L A+S++ + + EVL +A T S REL+GA N L R Sbjct: 308 LEPADRALRIGILERKLQALSRQHGFEPTLRAEVLNFLADRFTDSVRELEGALNTLSARA 367 Query: 383 SFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 LT E +L + GE K++ I+DIQ+ ++HY + + DLLS RR R + RP Sbjct: 368 GEGVSRLTLEEVQAILRPHLRAGE-KRITIDDIQKATSEHYGMKQVDLLSERRNRAIARP 426 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RQ AM+L+K +T RS P+IGRRFG RDHTTVLHAVR++E + D L +++E + R Sbjct: 427 RQAAMWLAKQLTTRSLPDIGRRFGGRDHTTVLHAVRRIEALRADDPVLSQDLETITR 483 >gi|296283101|ref|ZP_06861099.1| chromosomal replication initiation protein [Citromicrobium bathyomarinum JL354] Length = 484 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 165/493 (33%), Positives = 274/493 (55%), Gaps = 42/493 (8%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLK---FHSVLHNIVHLSV 76 K D+++ L + + I S+ L+ +G +++ W + ++ F S + L + Sbjct: 16 KGEGEDMERVALAADWDDI----STGLRKDLGHQLHSQWIKPIQLGEFDSETGTLA-LYL 70 Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 P+ F W++ + + ++ ++ S I+ V I V PS +++ I+ Sbjct: 71 PSEFAAEWVRKHFADRLSLAWKIMRSEIKTVAIEVH-------------PSRKRMADISL 117 Query: 137 NISKSPIILGKQ---TISPVFGSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 S+ P G + FG P LD+ F+ F+ G +N +A AAQ +A + Sbjct: 118 GDSRRPANDGPELRVVSDGGFGDPGFSSVGLDASLTFAAFVTGDANVLARNAAQRMAANE 177 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 ++ PL+I A+ G GKTHLL AI + + + P R+ Y +AE FM F A++ Sbjct: 178 KPQFS-----PLYIKAATGQGKTHLLHAIGHQFLSQHPRARIFYCSAERFMVEFVQALKQ 232 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 N + K LR DLLL+DD+QF+ GK Q E + ++ LL K++V AADR P L+ Sbjct: 233 NRMIEFKTRLRGFDLLLVDDLQFIIGKASAQEELLYTIDHLLSEGKRLVFAADRAPQALD 292 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 S++PR+ SRL G+ + D E+R SIL+++L L++ ++V+ +ART+T Sbjct: 293 SVEPRLLSRLSMGLVADIQPADLELRRSILESKLT----RFAPLSVPDDVVDFLARTITR 348 Query: 367 SGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 + REL G N+L+ + ++ ++A+E L+ +++ +++ I++IQR V + Y I Sbjct: 349 NVRELVGGLNKLIAYAQLTGQPVSLQLAEEQLTDILSANR-RRITIDEIQRTVCQFYRID 407 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 R+++ S RR R VVRPRQVAMYLSK++TPRS+PEIGR+FG RDH+TV+HAV+ +E + Sbjct: 408 RSEMSSKRRTRAVVRPRQVAMYLSKVLTPRSYPEIGRKFGGRDHSTVIHAVKLIEDLRTR 467 Query: 486 DITLKKEVELLKR 498 D + +V L R Sbjct: 468 DADMDGDVRSLLR 480 >gi|16124264|ref|NP_418828.1| chromosomal replication initiator protein DnaA [Caulobacter crescentus CB15] gi|221232947|ref|YP_002515383.1| chromosomal replication initiation protein [Caulobacter crescentus NA1000] gi|239977204|sp|B8GWW5|DNAA_CAUCN RecName: Full=Chromosomal replication initiator protein DnaA gi|239977205|sp|P0CAU4|DNAA_CAUCR RecName: Full=Chromosomal replication initiator protein DnaA gi|13421094|gb|AAK21996.1| chromosomal replication initiator protein DnaA [Caulobacter crescentus CB15] gi|220962119|gb|ACL93475.1| chromosomal replication initiator protein DnaA [Caulobacter crescentus NA1000] Length = 490 Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 175/487 (35%), Positives = 252/487 (51%), Gaps = 33/487 (6%) Query: 30 CLEVNCE---SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 + CE ++++ V LK ++G + SW V L T + WI+ Sbjct: 15 AIATACEPAANVWSKVCVALKRELGDAAFGSWIAPAMLREAATGDVVLVTSTGIARDWIR 74 Query: 87 NRYLETITKLFQEEHSRIQGVEILVR----SVALPSVEKT----ASSPSITKLSPINTNI 138 I +L+ + + +++ R + A VE T A+ P I + P++T+ Sbjct: 75 RSAWRRIGELWAAHDATGRRIDLKSRLEFEAAAGAYVEATPKAVAAEP-IEIVLPVSTD- 132 Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLN 197 +P ++ SP L RF F TF+ G +N A A+ IA D H N Sbjct: 133 --APTVVAPSAKSPRT-QGLQERFTFETFVPGPANEFAHAVARRIANWADGH------FN 183 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 P+ H G GKTHLL A+A +++ P RVVYLTAE F+ F A+ D K+ L Sbjct: 184 PVLFHGPYGFGKTHLLNALAWEAMRNAPEKRVVYLTAERFLSTFVRAVMDRQTAAFKEEL 243 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R DLL+IDD+ F+ GK Q E H L +L+ +VV +ADRPPS + +D +RS L Sbjct: 244 RAADLLIIDDVHFIAGKQSTQEELFHTLTALVGEGGRVVFSADRPPSAMTEMDAHLRSHL 303 Query: 317 QGGVSVPLGLHDYEMRFSILKNR---LAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 G+ L D +R IL+ + L + +P +I EV+ +A T S REL+G Sbjct: 304 SAGLVCGLEPADRNLRLGILERKIQTLGAAHGFEP--SIRPEVMQFLADRFTDSVRELEG 361 Query: 374 AFNQLVFR--HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 A N L R + + E+ L HL +GE K++ I+DIQ+ A+HY + + DLLS Sbjct: 362 ALNTLSARAGEGLSRMTLDEVQAILRPHL-RSGE-KRITIDDIQKATAEHYGMKQADLLS 419 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 RR R V RPRQ AM+L+K +T RS P+IGRRFG RDHTTVLHAVR++E + D L Sbjct: 420 ERRNRAVARPRQAAMWLAKQLTTRSLPDIGRRFGGRDHTTVLHAVRRIEALRAEDSALSH 479 Query: 492 EVELLKR 498 ++E L R Sbjct: 480 DLETLTR 486 >gi|113460282|ref|YP_718341.1| chromosomal replication initiation protein [Haemophilus somnus 129PT] gi|123031085|sp|Q0I0Y7|DNAA_HAES1 RecName: Full=Chromosomal replication initiator protein DnaA gi|112822325|gb|ABI24414.1| chromosomal replication initiator protein DnaA [Haemophilus somnus 129PT] Length = 452 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 162/459 (35%), Positives = 258/459 (56%), Gaps = 24/459 (5%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV + + +W + L+ N++ L P F+K W++N YL ITKL Q+ + Sbjct: 15 QLQDQVSSNDFTTWLRPLQDDVSESNMI-LYAPNCFIKGWVENHYLTQITKLAQQLLNND 73 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 Q + + ++ P+ + T + T+ + I T + S L+ VF Sbjct: 74 QFM-VKIQDGIKPTEKTTTNVEQKTQNENCHNEI----------TSQQNYRSYLNKNHVF 122 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F+EG SN++A AQ +A+ + G + NPLF++ GLGKTHLL A+ N + Sbjct: 123 DNFVEGKSNQLARAVAQKVAK--NPGEQSA--NPLFLYGGTGLGKTHLLHAVGNGILANN 178 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P+ +VVY+ AE FM + A++ + + K R +D LLIDD+QF GK Q EF H+ Sbjct: 179 PHAQVVYMHAERFMQSYVKALKSDRMDSFKRFYRTVDALLIDDIQFFAGKDGTQEEFFHI 238 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 NSL + +Q++ +DR P E+E ++ R++SR G+SV + + E R +IL + Sbjct: 239 FNSLFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPELETRVAIL-----LK 293 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVN 402 + E+ + + EEV M + + T+ REL+GA N++ F +T + E L ++ Sbjct: 294 KAEEKNMVLPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAITIDFVRETLKDMLA 353 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + K + IE+IQ++VA +Y I +DL S RR R + RPRQ+AM L+K +T RS PEIGR Sbjct: 354 L-QDKLVTIENIQKIVADYYRIKISDLKSKRRSRNITRPRQLAMALAKELTNRSLPEIGR 412 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FGDRDHTTVLHA + + K+ E D ++++ L R +S Sbjct: 413 NFGDRDHTTVLHACKAIAKLREEDNGIQEDWSNLIRTLS 451 >gi|323463201|gb|ADX75354.1| chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius ED99] Length = 447 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 257/467 (55%), Gaps = 27/467 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ V S K V Y +W + +++ + + F+ W+ Y + I + Sbjct: 4 QEIWDNVLSLCKENVTTVSYDTWLKDTTLYALSRDEAIVIAAQPFIANWLTTNYTKLIKQ 63 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + L + +SS + +P+ P++ G+Q Sbjct: 64 YLEAVTQQTINTIKFITEEDLQELNVASSSHQLGHSTPV------EPVVSGEQ------- 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 ++ F TF+ G NR A+ ++AE ++ Y NPLFI+ VGLGKTHL+ A Sbjct: 111 --FNTNNTFETFVIGPGNRFPHAASLAVAESPANAY-----NPLFIYGGVGLGKTHLMHA 163 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + ++ P+ +V+Y ++E F F +IR+N + ++ RNID+LLIDD+QF+Q K Sbjct: 164 IGHYVLENNPDAKVLYTSSEKFTNEFIQSIRNNDTESFREKYRNIDILLIDDIQFIQKKE 223 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N L + KQ+V ++DRPP E+ +L+ R++SR Q G+ V + D+E R + Sbjct: 224 QTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTLEERLKSRFQWGLIVDITPPDFETRMA 283 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIA 393 IL+ + E+ L+I E L ++A + T+ REL+GA + L + +T E+ Sbjct: 284 ILQKKT-----EEENLDIPIESLTYIANQIQTNIRELEGALTRVLAYSKLQGKPITTELT 338 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L ++ +TKK+ I+DIQ++V ++Y + D ++ +R +++ PRQ+AMYLS+ +T Sbjct: 339 ADALKDIIQVTKTKKITIQDIQKVVGEYYGVRIEDFVAKKRTKSIAYPRQIAMYLSRELT 398 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG FG RDHTTV+HA K++K +E D TL++E+E L++ I Sbjct: 399 DFSLPKIGEEFGGRDHTTVIHAHDKIKKDIENDPTLRQEIESLEKDI 445 >gi|162147555|ref|YP_001602016.1| chromosomal replication initiator protein dnaA [Gluconacetobacter diazotrophicus PAl 5] gi|161786132|emb|CAP55714.1| putative chromosomal replication initiator protein dnaA [Gluconacetobacter diazotrophicus PAl 5] Length = 487 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 167/436 (38%), Positives = 260/436 (59%), Gaps = 22/436 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT 129 N++ + P L+ W++ +Y + ++ L+ E I+ VE+ V P E A + Sbjct: 67 NVLDILRPA-LLRDWVRTQYGDRLSALWNAELPAIRRVEL---QVGRP--EGAADGAAPA 120 Query: 130 KLSPINTNISKSPIILGKQTISP---VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 P + I+G + + +PLD RF F TF+ G N A A+ +AE Sbjct: 121 LADPPVAATPATAAIVGDERVPENRNDLAAPLDPRFTFDTFVVGKPNEFAYACARRVAER 180 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 S + NPLF++ VGLGKTHL+ AI + + R + V Y++AE FM+RF +AIR Sbjct: 181 PS----SPGFNPLFLYGGVGLGKTHLMHAIG-SELVRGGAVSVAYMSAEKFMYRFIAAIR 235 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K+ LR++D+L+IDD+QFL GK Q EF H N+L+D+ +Q+V +AD+ PS+L Sbjct: 236 SQSTMEFKEQLRSVDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDL 295 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 L+ R+R+RL G+ + +E+R SIL+++ A S P +VL +A +T Sbjct: 296 SGLEDRLRTRLGCGMVADIHATTFELRISILESKAAASGVAVPA-----KVLEFLAHKIT 350 Query: 366 TSGRELDGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA N+L+ + F +T E ++L H + +++ IE+IQR V++H+NI Sbjct: 351 SNVRELEGALNRLIAHANLFGRPVTLEATQDVL-HDILKAHDRRVTIEEIQRKVSEHWNI 409 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 D+ S RR R V RPRQVAMYL+K +T RS PEIGR+FG+RDHTTV+HAV +V +++E Sbjct: 410 RLTDMSSARRARAVARPRQVAMYLAKQLTSRSLPEIGRKFGNRDHTTVMHAVARVTELME 469 Query: 485 TDITLKKEVELLKRLI 500 D ++VELL+R++ Sbjct: 470 RDTAFAEDVELLRRML 485 >gi|315286682|ref|ZP_07872175.1| chromosomal replication initiator protein DnaA [Listeria ivanovii FSL F6-596] gi|313630903|gb|EFR98594.1| chromosomal replication initiator protein DnaA [Listeria ivanovii FSL F6-596] Length = 420 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 153/431 (35%), Positives = 243/431 (56%), Gaps = 30/431 (6%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T PS ++ + I +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKPS--------PSLDEDGIEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + K Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AK 289 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTG 404 D L+I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + Sbjct: 290 AD-GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSS 348 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG F Sbjct: 349 KSQVITISGIQETVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEF 408 Query: 465 GDRDHTTVLHA 475 G RDHTTV+HA Sbjct: 409 GGRDHTTVIHA 419 >gi|331270706|ref|YP_004397198.1| chromosomal replication initiator protein DnaA [Clostridium botulinum BKT015925] gi|329127256|gb|AEB77201.1| chromosomal replication initiator protein DnaA [Clostridium botulinum BKT015925] Length = 450 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 153/473 (32%), Positives = 269/473 (56%), Gaps = 27/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E +++ + +K ++ + +W + + S+ N + L VP +F + +++RY Sbjct: 1 MNAQLEQLWSKTLNIIKGELTEVSFNTWIKSISPISIDENTIKLQVPNDFTRGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ +E ++ S E ++ T L N NI I Sbjct: 61 DLIINAIKLITSKKYNIEF-----SITSEEVLNNNHLNTTLKSNNENI----------VI 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 NDEMTSILNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P+ +VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF Sbjct: 161 HLMHAIGHYILQNTPSAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQF 220 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 221 IAGKERTQEEFFHTFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +ILK + + LNI EV++++A + ++ REL+GA ++V S + Sbjct: 281 ETRIAILKKKADVEN-----LNIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREV 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ + K++ I+ IQ +V +YN+ DL S+RR R + PRQ+AMYL Sbjct: 336 SVDLAAEALKDIISSEQNKQVTIDLIQDIVCNYYNLKIQDLKSSRRTRNIAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ +L+ D +L+ + L + I+ Sbjct: 396 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISTILKKDESLRNVINDLNKKIT 448 >gi|229100789|ref|ZP_04231609.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-28] gi|228682628|gb|EEL36685.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-28] Length = 337 Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 139/339 (41%), Positives = 213/339 (62%), Gaps = 12/339 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI Sbjct: 2 LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIG 56 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Sbjct: 57 HYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQT 116 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL Sbjct: 117 QEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAIL 176 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADE 395 + + L+I EV++++A + ++ REL+GA ++V S + A++A E Sbjct: 177 RKKAKAE-----GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAE 231 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ +T Sbjct: 232 ALKDIIPNSKPKIISIYDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDS 291 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE Sbjct: 292 SLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVE 330 >gi|168183727|ref|ZP_02618391.1| chromosomal replication initiator protein DnaA [Clostridium botulinum Bf] gi|237793321|ref|YP_002860873.1| chromosomal replication initiation protein [Clostridium botulinum Ba4 str. 657] gi|259645246|sp|C3KXQ7|DNAA_CLOB6 RecName: Full=Chromosomal replication initiator protein DnaA gi|182673252|gb|EDT85213.1| chromosomal replication initiator protein DnaA [Clostridium botulinum Bf] gi|229261050|gb|ACQ52083.1| chromosomal replication initiator protein DnaA [Clostridium botulinum Ba4 str. 657] Length = 448 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/462 (32%), Positives = 262/462 (56%), Gaps = 35/462 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ +N L+VP +F K +++RY + I + S+ Sbjct: 16 IKGELTEVSFNTWIKSINPISLENNSFKLAVPNDFTKGILESRYKDLIVNALKLLTSKKY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++ +V + + + + + ++ + L+ ++ F Sbjct: 76 NIDFIVTTEEKIEENEKNHNNEKSNI-----------------VVNDEMSTMLNPKYTFD 118 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P Sbjct: 119 SFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILHNNP 173 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF+ GK Q EF H Sbjct: 174 KSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQFIAGKERTQEEFFHTF 233 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 234 NALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAILKKKADVE- 292 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHL 400 KLNI EV++++A + ++ REL+GA ++V +F+ + EI A E L + Sbjct: 293 ----KLNIPNEVMVYIATKIKSNIRELEGALIRIV---AFSSLTNKEISVDLASEALKDI 345 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 +++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYLS+ +T S P+I Sbjct: 346 ISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYLSRKLTDMSLPKI 405 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G FG RDHTTV+HA K+ L+ D +L+ + L + I++ Sbjct: 406 GEEFGGRDHTTVIHAYEKISNNLKKDESLQNAINELNKRINQ 447 >gi|403535|gb|AAA18927.1| DnaA [Caulobacter crescentus CB15] Length = 490 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 175/487 (35%), Positives = 252/487 (51%), Gaps = 33/487 (6%) Query: 30 CLEVNCE---SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 + CE ++++ V LK ++G + SW V L T + WI+ Sbjct: 15 AIATACEPAANVWSKVCVALKRELGDAAFGSWIAPAMLREAATGDVVLVTSTGIARDWIR 74 Query: 87 NRYLETITKLFQEEHSRIQGVEILVR----SVALPSVEKT----ASSPSITKLSPINTNI 138 I +L+ + + +++ R + A VE T A+ P I + P++T+ Sbjct: 75 RSAWRRIGELWAAHDATGRRIDLKSRLEFEAAAGAYVEATPKAVAAEP-IEIVLPVSTD- 132 Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLN 197 +P ++ SP L RF F TF+ G +N A A+ IA D H N Sbjct: 133 --APTVVAPSAKSPRT-QGLQERFTFETFVPGPANEFAHAVARRIANWADGH------FN 183 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 P+ H G GKTHLL A+A +++ P RVVYLTAE F+ F A+ D K+ L Sbjct: 184 PVLFHGPYGFGKTHLLNALAWEAMRNAPEKRVVYLTAERFLSTFVRAVMDRQTAAFKEEL 243 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R DLL+IDD+ F+ GK Q E H L +L+ +VV +ADRPPS + +D +RS L Sbjct: 244 RAADLLIIDDVHFIAGKQSTQEELFHTLTALVGEGGRVVFSADRPPSAMTEMDAHLRSHL 303 Query: 317 QGGVSVPLGLHDYEMRFSILKNR---LAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 G+ L D +R IL+ + L + +P +I EV+ +A T S REL+G Sbjct: 304 SAGLVCGLEPADRNLRLGILERKIQTLGAALGFEP--SIRPEVMQFLADRFTDSVRELEG 361 Query: 374 AFNQLVFR--HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 A N L R + + E+ L HL +GE K++ I+DIQ+ A+HY + + DLLS Sbjct: 362 ALNTLSARAGEGLSRMTLDEVQAILRPHL-RSGE-KRITIDDIQKATAEHYGMKQADLLS 419 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 RR R V RPRQ AM+L+K +T RS P+IGRRFG RDHTTVLHAVR++E + D L Sbjct: 420 ERRNRAVARPRQAAMWLAKQLTTRSLPDIGRRFGGRDHTTVLHAVRRIEALRAEDSALSH 479 Query: 492 EVELLKR 498 ++E L R Sbjct: 480 DLETLTR 486 >gi|315644300|ref|ZP_07897470.1| chromosomal replication initiation protein [Paenibacillus vortex V453] gi|315280675|gb|EFU43964.1| chromosomal replication initiation protein [Paenibacillus vortex V453] Length = 448 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 266/472 (56%), Gaps = 30/472 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++ + S ++ ++ + +WF+ K ++ + V +S PT F W+++RY Sbjct: 1 MESHTSELWQEILSIIQTKLSKPSFDTWFKATKALTINDHSVVISAPTTFAVEWLESRY- 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TKL + G ++ VR V E P + + SP P+ + + I Sbjct: 60 ---TKLVSATVLEVVGKQVDVRFVI---EEAKGHEPVLQQPSP--------PLEISGEEI 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 106 Q---SHMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 157 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P+ +VVY+++E F F ++IRDN A + ++ R++D+LLIDD+QF Sbjct: 158 HLMHAIGHYILEHNPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRSVDILLIDDIQF 217 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 218 LAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDL 277 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + ++ E+ L+I E +M++A + T+ REL+GA ++V S + Sbjct: 278 ETRIAILRKK---AKAEN--LDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDV 332 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E L ++ + + + I+DIQ+ V ++YN+ D + +R + V PRQ+AMYL Sbjct: 333 TTHLAAEALKDIIPSSRPRMITIQDIQQKVGEYYNLRLEDFKARKRTKAVAFPRQIAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ +T S P+IG FG RDHTTV+HA K+ + L+ D L K V L I Sbjct: 393 SRELTDYSLPKIGEAFGGRDHTTVIHAHEKITQSLKNDQELFKVVNNLTEKI 444 >gi|253681350|ref|ZP_04862148.1| chromosomal replication initiator protein DnaA [Clostridium botulinum D str. 1873] gi|253562588|gb|EES92039.1| chromosomal replication initiator protein DnaA [Clostridium botulinum D str. 1873] Length = 449 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 151/479 (31%), Positives = 270/479 (56%), Gaps = 40/479 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E +++ + +K ++ + +W + + S+ N + L VP +F + +++RY Sbjct: 1 MNAQLEQLWSKTLNIIKGELTEVSFNTWIKSISPISIDENTIKLQVPNDFTRGILESRY- 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS------PII 144 ++++ ++ L + +K SIT +N N+ + II Sbjct: 60 ----------------KDLIINAIKLITSKKYNIDFSITSEEILNNNLKNTFKSNDENII 103 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + + S L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ Sbjct: 104 INDE-----MTSILNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGG 153 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI + ++ PN +V Y+++E F ++I+D+ ++ RN+D+LL Sbjct: 154 VGLGKTHLMHAIGHYILQNTPNAKVAYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLL 213 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF+ GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ Sbjct: 214 IDDIQFIAGKERTQEEFFHTFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIAD 273 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +ILK + + LNI EV++++A + ++ REL+GA ++V S Sbjct: 274 IQAPDFETRIAILKKKADVEN-----LNIPNEVMVYIATKIKSNIRELEGALIRIVAYSS 328 Query: 384 FAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 ++ ++A E L ++++ + K++ I+ IQ +V +YN+ DL S+RR R + PR Sbjct: 329 LTNREVSVDLAAEALKDIISSEQNKQVTIDLIQDIVCSYYNLRIQDLKSSRRTRNIAFPR 388 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AMYLS+ +T S P+IG FG RDHTTV+HA K+ +L+ D +L+ + L + I+ Sbjct: 389 QIAMYLSRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNILKKDESLRNVINDLNKKIT 447 >gi|270158402|ref|ZP_06187059.1| chromosomal replication initiator protein DnaA [Legionella longbeachae D-4968] gi|289163354|ref|YP_003453492.1| Chromosomal replication initiator protein DnaA [Legionella longbeachae NSW150] gi|269990427|gb|EEZ96681.1| chromosomal replication initiator protein DnaA [Legionella longbeachae D-4968] gi|288856527|emb|CBJ10322.1| Chromosomal replication initiator protein DnaA [Legionella longbeachae NSW150] Length = 458 Score = 267 bits (683), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 264/460 (57%), Gaps = 19/460 (4%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF-QEEHSRI 104 L+++ + +W + L+ H+ ++ L P F+ W+K + I +L Q +I Sbjct: 13 LQDEYSAQQFNTWLRPLQAHTDEQRLI-LFAPNRFVVDWVKKHFFSRIEELINQLSGDQI 71 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 + V I + S + ++S+ SI +P+N + + + + + S L+ +FVF Sbjct: 72 KSVSIEIGSKTSNNDSDSSSTGSIR--TPVNVSANSTEVKATPKKAVDYKSSHLNKKFVF 129 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 +F+EG+SN++A A+ +AE Y NPLFI+ VGLGKTHL+ AI N+ +K Sbjct: 130 ESFVEGNSNQLARAASMQVAERPGDAY-----NPLFIYGGVGLGKTHLMHAIGNSILKNN 184 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P+ +++YL +E F+ AI+ N K R+++ LLIDD+QF GK Q EF H Sbjct: 185 PDAKILYLHSERFVADMVKAIQTNSINEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHT 244 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+LL+ +Q++ +DR P E+E ++ R++SR G++V + + E R +IL IS Sbjct: 245 FNALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAIL-----IS 299 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLV 401 + E +++ EV +A+ + ++ REL+GA +++ F PI T E E L L+ Sbjct: 300 KAEQSNIDLPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPI-TIEFVHEALRDLL 358 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + K + IE+IQ+ VA++Y + DLLS RR R++ RPRQ+AM LSK +T S PEIG Sbjct: 359 AL-QDKLVTIENIQKTVAEYYKVKVADLLSKRRSRSIARPRQMAMALSKELTNHSLPEIG 417 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTV+HA RKV+++++ D ++ + L R++S Sbjct: 418 DHFGGRDHTTVIHACRKVKELIQDDSDFAEDYKNLMRILS 457 >gi|226309588|ref|YP_002769482.1| chromosomal replication initiation protein [Brevibacillus brevis NBRC 100599] gi|226092536|dbj|BAH40978.1| chromosomal replication initiator protein DnaA [Brevibacillus brevis NBRC 100599] Length = 453 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 152/469 (32%), Positives = 266/469 (56%), Gaps = 27/469 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ ++ V ++++ + + +W + K ++ + + + P +F + W++ RY Sbjct: 1 MDAAISELWRKVLAKIEKSLSKPSFDTWLKATKATTLEEDALIVVAPNDFARDWLETRYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI-NTNISKSPIILGKQT 149 + IT E + G+ + V+ VAL + + + P+ +S+ P + Q Sbjct: 61 QLITDTLYE----VTGINMKVKFVALQNPDA-----AFADEQPVPRVKMSEPPTVADDQP 111 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGK Sbjct: 112 -----PSILNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGK 161 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + I+ P+ +VVYL++E F F ++IRDN A+ ++ R++D+LLIDD+Q Sbjct: 162 THLMHAIGHYVIQHNPSAKVVYLSSEKFTNEFINSIRDNKAVEFRNKYRSVDVLLIDDIQ 221 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK Q EF H N+L + +KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 222 FLAGKESTQEEFFHTFNALHEESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPD 281 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ + ++ E+ L+I EV+ ++A + ++ REL+GA ++V S Sbjct: 282 LETRIAILRKK---AKAEN--LDIPNEVMAYIANQIDSNIRELEGALIRVVAYSSLINRD 336 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++A E L ++ + + + I DIQR V + +++ D + +R +TV PRQ+AMY Sbjct: 337 IDTQLAAEALKDIIPSSRPRVITIIDIQRTVGEAFSLKLEDFKAKKRTKTVAFPRQIAMY 396 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 LS+ +T S P+IG FG RDHTTV+HA K+ + L D ++ ++ L Sbjct: 397 LSRELTDASLPKIGDEFGGRDHTTVIHAHEKISRALANDPHMQTTIQSL 445 >gi|319893740|ref|YP_004150615.1| Chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius HKU10-03] gi|317163436|gb|ADV06979.1| Chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius HKU10-03] Length = 447 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 256/467 (54%), Gaps = 27/467 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ V S K V Y +W + +++ + + F+ W+ Y + I + Sbjct: 4 QEIWDNVLSLCKENVTTVSYDTWLKDTTLYALSRDEAIVIAAQPFIANWLTTNYTKLIKQ 63 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + L + +SS +P+ P++ G+Q Sbjct: 64 YLEAVTQQTINTIKFITEEDLQELNVASSSHQSGHSTPV------EPVVSGEQ------- 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 ++ F TF+ G NR A+ ++AE ++ Y NPLFI+ VGLGKTHL+ A Sbjct: 111 --FNTNNTFETFVIGPGNRFPHAASLAVAESPANAY-----NPLFIYGGVGLGKTHLMHA 163 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + ++ P+ +V+Y ++E F F +IR+N + ++ RNID+LLIDD+QF+Q K Sbjct: 164 IGHYVLENNPDAKVLYTSSEKFTNEFIQSIRNNDTESFREKYRNIDILLIDDIQFIQKKE 223 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N L + KQ+V ++DRPP E+ +L+ R++SR Q G+ V + D+E R + Sbjct: 224 QTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTLEERLKSRFQWGLIVDITPPDFETRMA 283 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIA 393 IL+ + E+ L+I E L ++A + T+ REL+GA + L + +T E+ Sbjct: 284 ILQKKT-----EEENLDIPIESLTYIANQIQTNIRELEGALTRVLAYSKLQGKPITTELT 338 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L ++ +TKK+ I+DIQ++V ++Y + D ++ +R +++ PRQ+AMYLS+ +T Sbjct: 339 ADALKDIIQVTKTKKITIQDIQKVVGEYYGVRIEDFVAKKRTKSIAYPRQIAMYLSRELT 398 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG FG RDHTTV+HA K++K +E D TL++E+E L++ I Sbjct: 399 DFSLPKIGEEFGGRDHTTVIHAHDKIKKDIENDPTLRQEIESLEKDI 445 >gi|119475236|ref|ZP_01615589.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2143] gi|119451439|gb|EAW32672.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2143] Length = 479 Score = 267 bits (682), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 166/492 (33%), Positives = 270/492 (54%), Gaps = 42/492 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ES + + L++++ + +W + L+ V ++ L P F+K W+K++YLE I + Sbjct: 3 ESTWQQCNHYLRDELPSQQFNTWIRPLQ-AEVHGRVIKLIAPNRFVKDWVKSKYLERIEE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTAS---SPSITKLSPINTNISKSPIILGKQTISP 152 + E + E S+ + + +K A+ SP++ S + T S + +P Sbjct: 62 IVFE----LAPDEGFGVSLEICNGDKQAARHKSPALIANSSVKTTSRSSGFTSSPRASAP 117 Query: 153 VFG-------SP--------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 FG SP L + F TF+EG SN++A A+ +AE Y Sbjct: 118 NFGNVRQQQSSPRKVEVEGAIQHQSFLMENYTFDTFVEGKSNQLARAASIQVAENTGGAY 177 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLF++ VGLGKTHL+ A+ NA I+R+PN +VVYL +E F+ A++ N Sbjct: 178 -----NPLFLYGGVGLGKTHLMHAVGNAIIQRKPNAKVVYLHSERFVADMVKALQLNAIN 232 Query: 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K R++D LLIDD+QF GK Q EF H N+LL+ +Q++ DR P E+ L+ Sbjct: 233 EFKRYYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTCDRYPKEINGLEE 292 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R++SR G++V + + E R +IL + + E K+ + + +A+ + ++ RE Sbjct: 293 RLKSRFGWGLTVAVEPPELETRVAIL-----MKKAEQAKIELPADAAFFIAQRIRSNVRE 347 Query: 371 LDGAFNQLVFR-HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 L+GA +++ H + E+ E L L+ + K++ +E+IQR VA++Y I +D+ Sbjct: 348 LEGALKRVIASAHFMGREIDIELIRESLKDLLAL-QDKQVSMENIQRTVAEYYKIKVSDM 406 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 +S RR R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RK++++ ETD + Sbjct: 407 MSKRRSRSVARPRQVAMALAKELTNHSLPEIGDGFGGRDHTTVLHACRKIKELEETDADI 466 Query: 490 KKEVELLKRLIS 501 +++ + L R ++ Sbjct: 467 REDCKNLLRSLT 478 >gi|309388282|gb|ADO76162.1| chromosomal replication initiator protein DnaA [Halanaerobium praevalens DSM 2228] Length = 466 Score = 266 bits (681), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 151/456 (33%), Positives = 256/456 (56%), Gaps = 20/456 (4%) Query: 46 LKNQVGPDVYASWFQRLK-FHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +K ++ + +WF K + N + L VP NF++ WI+++Y + I ++ + Sbjct: 19 IKEKITNPSFNTWFSETKAVMTTAENQLVLQVPNNFIQEWIESQYTDLIEEILTDLTGNQ 78 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 + +L P+ K + K +P K + T S + + + ++ F Sbjct: 79 WSLILLT-----PAEVKDFKANKKNKQNPKTKKDIKEDKKEKRDTESELKQNGFNPKYTF 133 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+QAIA+ +K Sbjct: 134 DTFVVGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGDVGLGKTHLMQAIAHFILKNN 188 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P+ +VVY+++E F ++I+D+ ++ +D RNID+LL+DD+QFL GK Q EF H Sbjct: 189 PDYKVVYVSSETFTNELINSIKDDSTVDFRDKYRNIDILLVDDIQFLAGKERTQEEFFHT 248 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L +S +Q++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + I Sbjct: 249 FNTLHESNRQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRIAILRKKADIE 308 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN 402 L I EV++++A + ++ REL+GA +++ S + ++A E L LVN Sbjct: 309 N-----LTIPNEVVIYIANKIQSNIRELEGALVKVIAYSSLVDREIDVDLAREALKDLVN 363 Query: 403 TGETKKMR--IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + + IE I++++ YN+ D+ S +R + + PRQ+AMYLS+ +T S P I Sbjct: 364 NKKEANIEVDIERIKKIITADYNLRMEDMHSKKRTQNIAFPRQIAMYLSRELTDFSLPHI 423 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 G FG RDHTTV+HA K+++ +E + ++E L Sbjct: 424 GNEFGGRDHTTVIHAHNKIKEKIENEADFSNKIERL 459 >gi|73661310|ref|YP_300091.1| chromosomal replication initiation protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123747926|sp|Q4A180|DNAA_STAS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|72493825|dbj|BAE17146.1| chromosomal replication initiator protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 455 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 136/350 (38%), Positives = 211/350 (60%), Gaps = 12/350 (3%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + G ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 IGGEQFNTHNTFETFVIGPGNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 167 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + P+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 168 MHAIGHYVLDNNPDAKVIYTSSEKFTNEFIKSIRDNKTERFREKYRNIDVLLIDDIQFIQ 227 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 228 NKEQTQEEFFHTFNELHQANKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 287 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTA 390 R +IL+ ++ + LNI E L ++A + ++ REL+GA + L F +T Sbjct: 288 RMAILQKKIG-----EENLNIPTEALTYIANQIQSNIRELEGALTRVLAFSKLQGQPITT 342 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 343 ELTAEALKDIIQAPKSKKITIQDIQKIVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K ++ D T K+EVE L++ I Sbjct: 403 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIVKDIQNDPTFKQEVENLEKEI 452 >gi|188589439|ref|YP_001919466.1| chromosomal replication initiation protein [Clostridium botulinum E3 str. Alaska E43] gi|251779038|ref|ZP_04821958.1| chromosomal replication initiator protein DnaA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226735791|sp|B2UX43|DNAA_CLOBA RecName: Full=Chromosomal replication initiator protein DnaA gi|188499720|gb|ACD52856.1| chromosomal replication initiator protein DnaA [Clostridium botulinum E3 str. Alaska E43] gi|243083353|gb|EES49243.1| chromosomal replication initiator protein DnaA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 456 Score = 266 bits (681), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 150/459 (32%), Positives = 260/459 (56%), Gaps = 21/459 (4%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ + +W + + S+ + +SVP +F K + RY + + S++ Sbjct: 16 VKSEMSEVSFNTWIKSCEPISISDTSIKISVPNSFTKDILDKRYKSLVANSIEAVCSKLY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++ ++ S E +S SI N N +K+ ++ + S L+ ++ F+ Sbjct: 76 DIKFIIESDLNNEDELNSSDNSIKNR---NKNSTKNIVV------NDEMSSTLNPKYTFN 126 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ Sbjct: 127 SFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILQNNT 181 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F +AI+D+ + RN+D+LLIDD+QF+ GK Q EF H Sbjct: 182 KAKVVYVSSEKFTNELINAIKDDKNEEFRKKYRNVDVLLIDDIQFIAGKERTQEEFFHTF 241 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + + D+E R +ILK + + Sbjct: 242 NELHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADVEN 301 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNT 403 L + EV+ ++A + ++ REL+GA +++ S +T ++A E L +++ Sbjct: 302 -----LKVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREVTVDLASEALKDIISK 356 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + K + I IQ +VA ++N+ +DL S RR R V PRQ+AMYLS+ +T S P+IG Sbjct: 357 KQGKHVTIPSIQEIVANYFNLKIDDLKSQRRTRNVAYPRQIAMYLSRKLTDMSLPKIGEE 416 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTV+HA K+ + L++D L+ V + + +S+ Sbjct: 417 FGGRDHTTVIHAYEKISENLKSDENLQHTVSDITKKVSQ 455 >gi|87198027|ref|YP_495284.1| chromosomal replication initiator protein DnaA [Novosphingobium aromaticivorans DSM 12444] gi|87133708|gb|ABD24450.1| chromosomal replication initiator protein DnaA [Novosphingobium aromaticivorans DSM 12444] Length = 498 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 165/489 (33%), Positives = 281/489 (57%), Gaps = 27/489 (5%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVP 77 + N+ D+ L++ + + +S LK +GP ++A W + ++ S + L +P Sbjct: 31 RESNMIEDQEALDLAAD--WADISQGLKKDLGPQLHAQWIKPIQLGSFCKETGTLDLFLP 88 Query: 78 TNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV--RSVALPSVEKTASSPSITKLSPIN 135 T F W+ +R+ + ++ ++ S ++ V I V R ++P + + ++P T S Sbjct: 89 TEFSANWVADRFADRLSLAWKIARSEVRQVRITVHPRRRSMPEL-RVGAAP--TAPSRAA 145 Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 T + SP+++ S LD F+ F+ GS+N +A+ AAQ +A +++ ++ Sbjct: 146 TLAATSPVMVDSAL------SGLDPSLTFAEFVSGSANVLAVNAAQRMAAIEAPQFS--- 196 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 PL++ S G GKTHLL AI +A +P R+ Y +AE FM F A+R N + K Sbjct: 197 --PLYLKGSTGQGKTHLLHAIGHAFAANKPGARIFYCSAERFMIEFVQAMRSNEMIEFKS 254 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 LR D+LL+DD+QF+ GK Q EF H +++L+ + K++V AADR P L+ ++ R+ S Sbjct: 255 RLRGFDMLLVDDIQFIIGKASTQEEFLHTIDALMSAGKRLVVAADRAPQALDGVEQRLLS 314 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 RL G+ + D E+R IL++RLA + +V+ +ART+ + REL G Sbjct: 315 RLSMGLVADIQPADIELRRKILEHRLA----RFGNTQVPSDVVEFLARTINRNVRELVGG 370 Query: 375 FNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N+L+ + ++ ++A+E L+ +++ +++ I++IQR V + Y + R ++ S R Sbjct: 371 LNKLIAYAQLTGQPVSLQLAEEQLTDILSANR-RRITIDEIQRTVCQFYRVDRTEMASKR 429 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R VVRPRQVAMYL+K++TPRS+PEIGR+FG RDH+TV+HAVR +E++ D + +V Sbjct: 430 RARAVVRPRQVAMYLAKVLTPRSYPEIGRKFGGRDHSTVIHAVRLIEELRARDADMDGDV 489 Query: 494 ELLKRLISE 502 L R + + Sbjct: 490 RTLLRQLED 498 >gi|52424540|ref|YP_087677.1| chromosomal replication initiation protein [Mannheimia succiniciproducens MBEL55E] gi|61212538|sp|Q65VB8|DNAA_MANSM RecName: Full=Chromosomal replication initiator protein DnaA gi|52306592|gb|AAU37092.1| DnaA protein [Mannheimia succiniciproducens MBEL55E] Length = 457 Score = 266 bits (680), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 160/459 (34%), Positives = 254/459 (55%), Gaps = 19/459 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++Q+ + W + L+ + + N + L F+K+W++N YL ITK+ Q+ + Sbjct: 15 QLQDQISSSDFGLWLRPLQADTSMPNTIVLYASNMFVKSWVENNYLAQITKIAQDLSNNT 74 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 V I V+ + P+ K + I NT + S + + F S L+ +F Sbjct: 75 DLV-IKVQEGSKPAARKVVAQQEIA-----NTPVQHSAP-MPENEPQAAFRSNLNQHHLF 127 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F+EG SN++A Q +A + G + NPLF++ GLGKTHLL A+ N I Sbjct: 128 ENFVEGKSNQLARAVGQKVA--NRPGDKSA--NPLFLYGGTGLGKTHLLHAVGNGIIAGN 183 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 N RVVY+ AE F+ + A++ N K R++D LLIDD+QF GK Q EF + Sbjct: 184 SNARVVYIHAERFVQEYVKALKAERIENFKKFYRSLDALLIDDIQFFAGKDGTQEEFFNT 243 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 NSL + KQ++ +DR P E+E +D R++SR G+S+ + D E R +IL + Sbjct: 244 FNSLFEGEKQIILTSDRYPREIEKIDDRLKSRFSWGLSIAIEPPDLETRVAIL-----MK 298 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVN 402 + E+ + + EEV + + + T+ REL+GA N++ F +T + E L ++ Sbjct: 299 KAEEKNIYLPEEVAFFIGQKLRTNVRELEGALNRVHANADFTGKAITIDFVRETLKDMLA 358 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + K + +E+IQ+MVA++Y I +DL S R R++ RPRQ+AM L+K +T RS PEIG+ Sbjct: 359 L-QDKLVTVENIQKMVAEYYRIKVSDLKSKNRSRSIARPRQLAMALAKELTNRSLPEIGK 417 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FGDRDHTTVLHA R + + + D ++++ L R +S Sbjct: 418 AFGDRDHTTVLHACRTIAALRDDDNNIQEDWSNLIRTLS 456 >gi|239637286|ref|ZP_04678273.1| chromosomal replication initiator protein DnaA [Staphylococcus warneri L37603] gi|239597123|gb|EEQ79633.1| chromosomal replication initiator protein DnaA [Staphylococcus warneri L37603] Length = 454 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 151/449 (33%), Positives = 248/449 (55%), Gaps = 23/449 (5%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + ++ + + +S+ ++ + V +F W+ +Y+E + + E + G E+ R + Sbjct: 23 FDTFVKDTQLYSLQNDKAIVLVSESFNANWLNQKYIEIMQSIIYE----VIGYEVKPRFI 78 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-SPLDSRFVFSTFIEGSSN 173 + K + P +P Q + G ++ F TF+ G N Sbjct: 79 TEEELSKYMKTDQKQPEEP------ATPETHQHQNVDNPGGIEQFNTHNTFDTFVIGPGN 132 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + PN V+Y + Sbjct: 133 RFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHLMHAIGHHVLDNNPNANVIYTS 187 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F F +IRDN ++ RNID+LLIDD+QF+Q K Q EF H N L ++ K Sbjct: 188 SEKFTNEFIKSIRDNQGDAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNELHNNNK 247 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V ++DRPP E+ L R+RSR + G+ V + DYE R +IL+ ++ E+ L+I Sbjct: 248 QIVISSDRPPKEISKLSDRLRSRFEWGLIVDITPPDYETRMAILQKKI-----EEENLDI 302 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRI 411 E L ++A + ++ REL+GA +L+ + +T E+A E L ++ ++KK+ I Sbjct: 303 PMESLNYIANQIQSNIRELEGALTRLLAYSQLQGKPITTELAAEALKDIIQAPKSKKITI 362 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 +DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDHTT Sbjct: 363 QDIQKVVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTT 422 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLI 500 V+HA K+ ++ D T K+EVE L++ I Sbjct: 423 VIHAHEKIVNDIKADPTFKQEVENLEKEI 451 >gi|88798539|ref|ZP_01114123.1| chromosomal replication initiation protein [Reinekea sp. MED297] gi|88778639|gb|EAR09830.1| chromosomal replication initiation protein [Reinekea sp. MED297] Length = 495 Score = 266 bits (679), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 174/510 (34%), Positives = 270/510 (52%), Gaps = 62/510 (12%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++++ +L++++ + +W + L ++ L P F+ W++++YLE I + Sbjct: 3 DTVWQQCLDQLRSELPSHQFNTWLKPLGLSEQAEALL-LCAPNRFIANWVRDKYLERI-Q 60 Query: 96 LFQEEHSRIQGVEILVRS-------------------------VALPSVEKTASSPSITK 130 + E + V I VRS V P+V A SPS ++ Sbjct: 61 VIAEGYGYDGQVAIEVRSKGASRSFTSTRSDTNDTSRSAPVVSVEAPAV---AESPSTSE 117 Query: 131 LSPINTNISKSPIILGKQTISPVFG----------------SPLDSRFVFSTFIEGSSNR 174 P +T ++ S + + P G S L+ F F +F+EG SN+ Sbjct: 118 SMP-DTGVAGSSTDTARSVVVPSEGVEVKTTGSSRGRNKVQSYLNKAFTFQSFVEGKSNQ 176 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +AL A+Q +AE Y NPLFI+ VGLGKTHL+QAI N I P +VVYL + Sbjct: 177 LALAASQQVAENAGGAY-----NPLFIYGGVGLGKTHLMQAIGNEIIANNPTAKVVYLHS 231 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +Q Sbjct: 232 ERFVADMVKALQLNAMAEFKRFYRSLDALLIDDIQFFAKKDRSQEEFFHTFNALLEGNQQ 291 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 V+ DR P E++ L+ R++SR G++V + D E R +IL + + E K+ + Sbjct: 292 VILTCDRFPKEIDGLEDRLKSRFGWGLTVAVEPPDLETRVAIL-----MKKAEQAKVKLP 346 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRI 411 E +A+ + ++ REL+GA +++ F API TA + E L L+ + K++ I Sbjct: 347 AESAFFIAQRIRSNVRELEGALKRVIANAQFIGAPIDTA-LVKEALKDLLAL-QDKQVSI 404 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 ++IQR VA++Y I +DL S RR R++ RPRQVAM LSK +T S PEIG FG RDHTT Sbjct: 405 DNIQRTVAEYYKIKISDLHSKRRSRSIARPRQVAMALSKELTQHSLPEIGDAFGGRDHTT 464 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHA RKV+++ ET+ ++++ L R ++ Sbjct: 465 VLHACRKVKELRETNQDIREDYSNLLRTLT 494 >gi|242243255|ref|ZP_04797700.1| replication initiation protein DnaA [Staphylococcus epidermidis W23144] gi|242233204|gb|EES35516.1| replication initiation protein DnaA [Staphylococcus epidermidis W23144] Length = 455 Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 154/471 (32%), Positives = 259/471 (54%), Gaps = 34/471 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLET 92 + + I R+ N Y ++ + + +S+ ++ I+ +S+P N +W+ RY E Sbjct: 11 WDKVLEIAQERISNTS----YQTFIKDTQLYSLKNDEAIILVSLPFN--ASWLNQRYSEI 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + S + + +NT + P I Sbjct: 65 MQAIIYD----VIGYEVKPHFI---------SEDELASYNNVNTQEVQEPQIQNSSIDDK 111 Query: 153 VFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +G + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 112 TWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+ Sbjct: 167 LMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFI 226 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 227 QNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILT 389 R +IL+ ++ E+ L+I E L ++A + ++ REL+GA +L+ + +T Sbjct: 287 TRMAILQKKI-----EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPIT 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS Sbjct: 342 TELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 402 RELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 452 >gi|167036432|ref|YP_001664010.1| chromosomal replication initiation protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038676|ref|YP_001661661.1| chromosomal replication initiation protein [Thermoanaerobacter sp. X514] gi|300913764|ref|ZP_07131081.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X561] gi|307723219|ref|YP_003902970.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X513] gi|320114858|ref|YP_004185017.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226735859|sp|B0KAG0|DNAA_THEP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735860|sp|B0K0W8|DNAA_THEPX RecName: Full=Chromosomal replication initiator protein DnaA gi|166852916|gb|ABY91325.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X514] gi|166855266|gb|ABY93674.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890449|gb|EFK85594.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X561] gi|307580280|gb|ADN53679.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X513] gi|319927949|gb|ADV78634.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 443 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 157/459 (34%), Positives = 262/459 (57%), Gaps = 38/459 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ P Y +W +K +++ +++ LS P F K I RY+ I + +++ Sbjct: 16 IKSELTPTSYNTWLVHIKPLAIIDDVLFLSTPNTFTKNIINGRYINIIYDAASKATNKLY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++IL E SI K N+++S + S L+ ++ F Sbjct: 76 EIKILSED----EEEYREIKESIEK-----ENLTESTTL-----------STLNPKYTFD 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKTHL+ AI + K Q Sbjct: 116 TFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHFINKHQS 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF+ K Q EF H Sbjct: 171 GYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DYE R +ILK + +Q Sbjct: 231 NTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKK---AQ 287 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN-- 402 E+ LNI +EVL +VA + ++ REL+GA ++V +F+ + A I EL H + Sbjct: 288 TEN--LNIPDEVLAYVAEKIQSNIRELEGALIRIV---AFSNLTKANIDLELAKHALKEI 342 Query: 403 -TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + +T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL++ +T S P+IG Sbjct: 343 VSNKTREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYLARELTDLSLPKIG 402 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 403 EEFG-KDHTTVIHAYEKISNEIKQDELLSRQIEELKKRI 440 >gi|118444635|ref|YP_879298.1| chromosomal replication initiation protein [Clostridium novyi NT] gi|166201879|sp|A0Q3U6|DNAA_CLONN RecName: Full=Chromosomal replication initiator protein DnaA gi|118135091|gb|ABK62135.1| chromosomal replication initiator protein DnaA [Clostridium novyi NT] Length = 448 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 148/458 (32%), Positives = 263/458 (57%), Gaps = 29/458 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ N + L VP +F + +++RY + I + S+ Sbjct: 16 IKGELTEVSFNTWIKSISPISMNENTIKLEVPNDFTRGILESRYKDLIINAIKLITSKKY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E + S + + ++ S N NI ++ S L+ ++ F Sbjct: 76 NIEFSITSEEIFNNQQLKPKSS-------NDNI----------VVNDEMTSILNPKYTFD 118 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ P Sbjct: 119 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILQNTP 173 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 N +VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF+ GK Q EF H Sbjct: 174 NAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFHTF 233 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 234 NALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADVEN 293 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNT 403 L+I EV++++A + ++ REL+GA ++V S ++ ++A E L ++++ Sbjct: 294 -----LDIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREISVDLAAEALKDIISS 348 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + K++ IE IQ +V ++N+ +L S+RR R + PRQ+AMYLS+ +T S P+IG Sbjct: 349 EQNKQITIELIQDIVCNYFNLKIQELKSSRRTRNIAFPRQIAMYLSRKLTDMSLPKIGEE 408 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTV+HA K+ +L+ D +L+ ++ L + I+ Sbjct: 409 FGGRDHTTVIHAYEKISNILKKDESLRNVIDDLNKKIT 446 >gi|289577266|ref|YP_003475893.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter italicus Ab9] gi|297543499|ref|YP_003675801.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289526979|gb|ADD01331.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter italicus Ab9] gi|296841274|gb|ADH59790.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 443 Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 157/463 (33%), Positives = 262/463 (56%), Gaps = 46/463 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ P Y +W +K +++ N++ LS P F K I RY+ I + +++ Sbjct: 16 IKSELTPTSYNTWLVHIKPLAIIDNVLFLSTPNTFTKNIINGRYINIIYDAASKASNKLY 75 Query: 106 GVEIL------VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 ++IL R + S+EK S+ S T S L+ Sbjct: 76 EIKILSEDEEEYREIK-ESIEKENSTESTTL-------------------------STLN 109 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKTHL+ AI + Sbjct: 110 PKYTFDTFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHF 164 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 K Q +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF+ K Q Sbjct: 165 INKHQSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQE 224 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DYE R +ILK Sbjct: 225 EFFHTFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKK 284 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELL 397 + +Q E+ LNI +EVL +VA + ++ REL+GA ++V F + + E+A + L Sbjct: 285 K---AQTEN--LNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKANIDLELAKQAL 339 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 +V + +T+++ ++ IQ V ++YNI D S +R + + PRQ+AMYL++ +T S Sbjct: 340 KEIV-SNKTREITVKLIQEEVCRYYNIKLEDFRSRKRTKNIAYPRQIAMYLARELTDLSL 398 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+IG FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 399 PKIGEEFG-KDHTTVIHAYEKISNEIKEDELLSRQIEELKKRI 440 >gi|88608587|ref|YP_506152.1| chromosomal replication initiator protein DnaA [Neorickettsia sennetsu str. Miyayama] gi|88600756|gb|ABD46224.1| chromosomal replication initiator protein DnaA [Neorickettsia sennetsu str. Miyayama] Length = 474 Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 160/470 (34%), Positives = 267/470 (56%), Gaps = 30/470 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V+ +L+ G +Y SW + + F + V LSVPT F+K WI YL I + E+ Sbjct: 22 VTRKLRKFYGEKIYGSWLKFMSFKEMRCGQVFLSVPTGFIKEWITVNYLGNILGFLRNEN 81 Query: 102 SRIQGVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 I +EI V AL S + +P + + IS + + S S + Sbjct: 82 PAITSIEIGVNKEHDRALESDREELVAPFV------KSKISSEKGRFDRGSFSENLSSSI 135 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL-----NPLFIHASVGLGKTHLL 213 D F +F+ G SN +A TA++ +AE V L NPLF++ VGLGKTHL+ Sbjct: 136 DRSRTFDSFVVGKSNELAFTASKRVAE-------AVELPISGSNPLFLYGGVGLGKTHLM 188 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + RV+YL+AE FM ++ +A+++ ++ K R++D+L++DD+QF+ G Sbjct: 189 HAIVWHIKANYADRRVIYLSAEKFMHKYITALKNKDMMSFKQIFRSVDVLMVDDVQFISG 248 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L++ KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R Sbjct: 249 KESTQEEFFHTFNALIEQNKQLVISADRSPSDLQGVEERIQSRLSWGLVADINQTTFELR 308 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS--FAPILTA 390 IL+++L ++ + + ++V+ +AR + ++ REL+GA N+ V HS ++T Sbjct: 309 VGILESKL---EQMKSDVVVPKKVVEFMARNIVSNVRELEGALNK-VIAHSEITGSVVTV 364 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + A +LL+ ++ T + +E+I V++++ I +DL S RRV+ V RQ+ M+L+K Sbjct: 365 DSAKDLLADILRTNSVA-VTLENILAKVSEYFGIKISDLKSQRRVKDVAYARQMCMFLAK 423 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL-KRL 499 +T RS +IG+ G RDH TV+H+VRK+E +++ D + ++V +L KRL Sbjct: 424 TLTQRSLIDIGKFLGGRDHATVIHSVRKIEILIKNDARVAEDVRILTKRL 473 >gi|70725002|ref|YP_251916.1| chromosomal replication initiation protein [Staphylococcus haemolyticus JCSC1435] gi|123762366|sp|Q4LAL5|DNAA_STAHJ RecName: Full=Chromosomal replication initiator protein DnaA gi|68445726|dbj|BAE03310.1| chromosomal replication initiator protein [Staphylococcus haemolyticus JCSC1435] Length = 451 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 154/468 (32%), Positives = 255/468 (54%), Gaps = 26/468 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ V ++++ + ++ + + + N+ + V F W+ + Y E I Sbjct: 4 QEIWKKVLEVAESEISKSTFNTFLKDTELKEIRDNVAIIFVIHEFYAEWLNSNYKEVIQT 63 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + ++ + G E+ + + E+ A ++ S + + I G + Sbjct: 64 IMKD----VIGYEVEPK---FFTAEQLAELDETSRKSNTPSEPQRQIIEYGHEGTDQ--- 113 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL+ A Sbjct: 114 --FNTHNTFDTFVIGPGNRFPHAASLAVAEAPAQAY-----NPLFIYGGVGLGKTHLMHA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + + QPN +V+Y ++E F F +IR+N ++ RNID+LLIDD+QF+Q K Sbjct: 167 IGHHVLSNQPNAKVLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQFIQNKE 226 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE R + Sbjct: 227 QTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMA 286 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ ++ E+ L I E L ++A + ++ REL+GA +L+ PI T E+ Sbjct: 287 ILQKKI-----EEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGRPI-TTEL 340 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L ++ ++KK+ I+DIQ++V +YN+ D + +R +++ PRQ+AMYLS+ + Sbjct: 341 AAEALKDIIQVPKSKKITIQDIQKVVGHYYNVRIEDFSAKKRTKSIAYPRQIAMYLSREL 400 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG FG RDHTTV+HA K+ K ++ D K+EVE L++ I Sbjct: 401 TDFSLPKIGEEFGGRDHTTVIHAHEKIAKDIKADTIFKQEVEDLEKEI 448 >gi|319399914|gb|EFV88160.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis FRI909] Length = 451 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 259/471 (54%), Gaps = 34/471 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLET 92 + + I R+ N Y ++ + + +S+ ++ I+ +S+P N +W+ RY E Sbjct: 7 WDKVLEIAQERISNTS----YQTFIKDTQLYSLKNDEAIILVSLPFN--ASWLNQRYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + S + + +NT + P + Sbjct: 61 MQAIIYD----VIGYEVKPHFI---------SEDELASYNNVNTQEVQEPQVQNSSIDDK 107 Query: 153 VFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +G + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 108 TWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+ Sbjct: 163 LMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFI 222 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 223 QNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILT 389 R +IL+ ++ E+ L+I E L ++A + ++ REL+GA +L+ + +T Sbjct: 283 TRMAILQKKI-----EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPIT 337 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS Sbjct: 338 TELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLS 397 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 398 RELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448 >gi|302336549|ref|YP_003801755.1| chromosomal replication initiator protein DnaA [Spirochaeta smaragdinae DSM 11293] gi|301633734|gb|ADK79161.1| chromosomal replication initiator protein DnaA [Spirochaeta smaragdinae DSM 11293] Length = 471 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 158/465 (33%), Positives = 255/465 (54%), Gaps = 21/465 (4%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++LKN++ + WF + +HS + LSVP+ F + +K RY I + E Sbjct: 18 NQLKNELSDQEFVMWFSNISYHSSEEGKLILSVPSAFYRDQVKQRYTGIIKEKLYELSGF 77 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-LDSRF 162 V+ +V A K + S T P+ + P+ + P P L + Sbjct: 78 QLDVDFIVTKRATSESPKEKNEVSDTPQPPMA--VKPVPVSVSPAKNDPPKKHPDLRPDY 135 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ G +N +A A +I++ Y NP I+ VGLGKTHL+Q+I N + Sbjct: 136 TFENFVIGENNTLAANACMAISKNPGTAY-----NPCLIYGGVGLGKTHLIQSIGNYAWA 190 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFC 281 P++++ Y+TAE F F AI N K+ R +D+LLIDD+ FLQ K Q E Sbjct: 191 HNPDIKIAYVTAETFTNEFIEAIHHNKNHQFKNKYRKVDILLIDDIHFLQEKTGTQEELF 250 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L ++ KQ+V DRP SEL+ L R+RSR + G++V L +E RF+ILK ++ Sbjct: 251 HTFNALYETNKQLVFTCDRPVSELKQLTDRLRSRFERGLNVDLQAPAFETRFAILKQKV- 309 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL----TAEIADELL 397 E+ K+ I++EV+ + R VTT+ R+L+ A +L+ ++A +L T +IA + L Sbjct: 310 ----EEKKVPIDDEVIELICRNVTTNVRDLEAALTRLI---AYADLLHKKVTLDIARQQL 362 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + + + + +E IQR+ A+++N+S NDL +R + + PRQ+AMY+++ +T S Sbjct: 363 KDVFSNPKMSNITVEMIQRVTAEYFNLSPNDLRGKKRTKAIAFPRQIAMYITREITEFST 422 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 E+G FG RDHTTV+HA ++VE ++TD +L+ ++ + R I E Sbjct: 423 TEVGLEFGGRDHTTVMHACQRVESRMQTDPSLEPIIQRIVRQIKE 467 >gi|225181147|ref|ZP_03734593.1| chromosomal replication initiator protein DnaA [Dethiobacter alkaliphilus AHT 1] gi|225168116|gb|EEG76921.1| chromosomal replication initiator protein DnaA [Dethiobacter alkaliphilus AHT 1] Length = 454 Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/461 (32%), Positives = 259/461 (56%), Gaps = 28/461 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ ++ ++ + +W + + S+ + + +SVP +F K W++ RY E IT+ Sbjct: 8 IWQATLDKISEKMSKPSFETWLKTTRPVSLSDDTLVISVPNDFTKDWLQGRYAEMITETL 67 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 Q+ ++ V + +P I + +T+ K KQ P S Sbjct: 68 QDVSNKNYHVHFI--------------TPRINEDETFDTSGEKETAPRLKQVEEPKLSSS 113 Query: 158 -LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ ++ F TF+ G+SNR A A+ +++E + Y NPLFI+ VGLGKTHL+ AI Sbjct: 114 WLNPKYTFDTFVIGNSNRFAHAASLAVSEAPARAY-----NPLFIYGGVGLGKTHLMHAI 168 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 + ++ P+ RV+Y+++E F F ++IRDN ++ ++ RNID+LLIDD+QFL GK Sbjct: 169 GHHVLENIPSYRVLYISSEKFTNEFINSIRDNKTVDFRNKYRNIDVLLIDDIQFLAGKEQ 228 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +I Sbjct: 229 TQEEFFHTFNALHENNKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQSPDLETRIAI 288 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L+ + K+ + +V++++A + T+ REL+GAF +++ S + +A+ Sbjct: 289 LRKK-----AHSEKITVANDVMLYIANNIVTNIRELEGAFIRVIAYSSLTNRNIDVSLAE 343 Query: 395 ELLSHLVNTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L +++ K + IE IQ+ +H+ + +L + +R R V PRQVAMYLS+ +T Sbjct: 344 EALQGILSQKNRPKFITIERIQKETCEHFALKPEELKAKKRTRNVALPRQVAMYLSRELT 403 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S P+IG FG RDHTTV+HA +K+ + + + L+ +E Sbjct: 404 DASLPKIGEEFGGRDHTTVMHAHKKILQDMRNNNELRGTIE 444 >gi|330685249|gb|EGG96910.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU121] Length = 454 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 151/449 (33%), Positives = 247/449 (55%), Gaps = 23/449 (5%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + ++ + + +S+ ++ + V +F W+ +Y E + + E + G E+ R + Sbjct: 23 FDTFVKDTQLYSLQNDKAIVLVSESFNANWLNQKYSEIMQSIIYE----VIGYEVKPRFI 78 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-SPLDSRFVFSTFIEGSSN 173 + K + P +P Q + G ++ F TF+ G N Sbjct: 79 TEEELSKYMKTDQKQPEEP------ATPETHQHQNVDNPGGIEQFNTHNTFDTFVIGPGN 132 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + PN V+Y + Sbjct: 133 RFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHLMHAIGHHVLDNNPNANVIYTS 187 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F F +IRDN ++ RNID+LLIDD+QF+Q K Q EF H N L ++ K Sbjct: 188 SEKFTNEFIKSIRDNQGDAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNELHNNNK 247 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V ++DRPP E+ L R+RSR + G+ V + DYE R +IL+ ++ E+ L+I Sbjct: 248 QIVISSDRPPKEISKLSDRLRSRFEWGLIVDITPPDYETRMAILQKKI-----EEENLDI 302 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRI 411 E L ++A + ++ REL+GA +L+ + +T E+A E L ++ ++KK+ I Sbjct: 303 PMESLNYIANQIQSNIRELEGALTRLLAYSQLQGKPITTELAAEALKDIIQAPKSKKITI 362 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 +DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDHTT Sbjct: 363 QDIQKVVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTT 422 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLI 500 V+HA K+ ++ D T K+EVE L++ I Sbjct: 423 VIHAHEKIVNDIKADPTFKQEVENLEKEI 451 >gi|258513367|ref|YP_003189589.1| chromosomal replication initiator protein DnaA [Desulfotomaculum acetoxidans DSM 771] gi|257777072|gb|ACV60966.1| chromosomal replication initiator protein DnaA [Desulfotomaculum acetoxidans DSM 771] Length = 446 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 154/470 (32%), Positives = 263/470 (55%), Gaps = 31/470 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 N ++I+ + +KN+V Y W L + +N++ + V NF K WI +RY Sbjct: 4 TNVKNIWEELLISIKNKVSQQSYDLWINSLNPIGLHNNVLTIEVSDNFTKDWINDRYY-- 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 L + + + ++ + VE S S+ K+ +I + Sbjct: 62 --PLLKSNLRNVLKTDTDIQFILAAEVENYLSQHSLEKVEEAKEDIEYNT---------- 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + + S++ F TF+ G SNR A A ++AE + Y NPLFI+ VGLGKTHL Sbjct: 110 ---NHIKSKYTFDTFVVGDSNRFAHAACFAVAESPAKSY-----NPLFIYGGVGLGKTHL 161 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AIA+ + + +VVY+T+E F ++ RD+ + ++ R++++LLIDD+QFL Sbjct: 162 MHAIAHYILTQGTGSKVVYVTSEKFTNELINSFRDDQTIKFRNKYRSMNILLIDDIQFLA 221 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + DYE Sbjct: 222 GKERTQEEFFHTFNTLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQAPDYET 281 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + + KL I +EV+ +A + ++ REL+G +++ SF + Sbjct: 282 RIAILRKKAQVD-----KLYIPDEVINFIATKIKSNIRELEGCLIRIIAYASFTKKEMNV 336 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A+++L ++N +TK++ +E IQ+ +A+H+ I +L + R RT+ PRQ+AMYL++ Sbjct: 337 ELAEQVLKDILNP-KTKQITVELIQKSIAEHFEIKSEELKAKNRSRTISHPRQIAMYLAR 395 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG FG RDHTTVLHA K+++ ++ D L+ + EL+ +L Sbjct: 396 ELTDLSLPKIGEAFGGRDHTTVLHAHEKIKEQIKKDGKLENTLKELINKL 445 >gi|326390364|ref|ZP_08211923.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus JW 200] gi|325993641|gb|EGD52074.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus JW 200] Length = 443 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 262/459 (57%), Gaps = 38/459 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ P Y +W +K +++ +++ LS P F K I RY+ I + +++ Sbjct: 16 IKSELTPTSYNTWLVHIKPLAIIDDVLFLSTPNTFTKNIINGRYINIIYDAASKATNKLY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++IL E SI K N+++S + S L+ ++ F Sbjct: 76 EIKILSED----EEEYREIKESIEK-----ENLTESTTL-----------STLNPKYTFD 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKTHL+ AI + K Q Sbjct: 116 TFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHFINKHQS 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF+ K Q EF H Sbjct: 171 GYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DYE R +ILK + +Q Sbjct: 231 NTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKK---AQ 287 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN-- 402 E+ LNI +EVL +VA + ++ REL+GA ++V +F+ + + I EL H + Sbjct: 288 SEN--LNIPDEVLAYVAEKIQSNIRELEGALIRIV---AFSNLTKSNIDLELAKHALKEI 342 Query: 403 -TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + +T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL++ +T S P+IG Sbjct: 343 VSNKTREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYLARELTDLSLPKIG 402 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 403 EEFG-KDHTTVIHAYEKISSEIKQDELLSRQIEELKKRI 440 >gi|57865939|ref|YP_190094.1| chromosomal replication initiation protein [Staphylococcus epidermidis RP62A] gi|71151806|sp|Q5HJZ9|DNAA_STAEQ RecName: Full=Chromosomal replication initiator protein DnaA gi|57636597|gb|AAW53385.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis RP62A] Length = 451 Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 259/471 (54%), Gaps = 34/471 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLET 92 + + I R+ N Y ++ + + +S+ ++ I+ +S+P N +W+ RY E Sbjct: 7 WDKVLEIAQERISNTS----YQTFIKDTQLYSLKNDEAIILVSLPFN--ASWLNQRYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + S + + +NT + P + Sbjct: 61 MQAIIYD----VIGYEVKPHFI---------SEDELASYNNVNTQEVQEPQVQHSSIDDK 107 Query: 153 VFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +G + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 108 TWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+ Sbjct: 163 LMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFI 222 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 223 QNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILT 389 R +IL+ ++ E+ L+I E L ++A + ++ REL+GA +L+ + +T Sbjct: 283 TRMAILQKKI-----EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPIT 337 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS Sbjct: 338 TELTAEALKDIIQSPKSKKITIQDIQKIVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLS 397 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 398 RELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448 >gi|308066839|ref|YP_003868444.1| Chromosomal replication initiator protein dnaA [Paenibacillus polymyxa E681] gi|305856118|gb|ADM67906.1| Chromosomal replication initiator protein dnaA [Paenibacillus polymyxa E681] Length = 451 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 163/473 (34%), Positives = 266/473 (56%), Gaps = 35/473 (7%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 VD E+ + I +I+ ++L Y +WF+ K + + + +S PT F W+ Sbjct: 4 VDSHTSEL-WQQILSIIQTKLSKPS----YDTWFKATKAAKLNDHSIVISAPTTFAVEWL 58 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 ++RY TKL I G ++ V+ V +E+ + P+ L + ++ Sbjct: 59 ESRY----TKLVGATVYEILGKQLEVKFV----IEE--NKPAEVDLQ----QQPQQQPVV 104 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 ++ +S + L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ V Sbjct: 105 HEEAVSHM----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFLYGGV 155 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ AI + ++ P +VVYL++E F F +AIRDN + ++ RNID+LLI Sbjct: 156 GLGKTHLMHAIGHYILEHNPTSKVVYLSSEKFTNEFINAIRDNRGESFRNKYRNIDILLI 215 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 216 DDIQFIAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDI 275 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + ++ E+ L+I E +M++A + T+ REL+GA ++V S Sbjct: 276 QPPDLETRIAILRKK---ARAEN--LDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSL 330 Query: 385 A-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T+ +A E L ++ + K + I+DIQ V + YN+ D + +R + V PRQ Sbjct: 331 TNQDVTSHLAAEALKDIIPSSRPKMITIQDIQHQVGEFYNLRLEDFKARKRTKAVAFPRQ 390 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +AMYLS+ +T S P+IG FG RDHTTV+HA K+ K ++ D L K + L Sbjct: 391 IAMYLSRELTDYSLPKIGEAFGGRDHTTVIHAHEKISKSIQVDQDLFKVINSL 443 >gi|27466919|ref|NP_763556.1| chromosomal replication initiation protein [Staphylococcus epidermidis ATCC 12228] gi|282874721|ref|ZP_06283600.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis SK135] gi|38257580|sp|Q8CQK7|DNAA_STAES RecName: Full=Chromosomal replication initiator protein DnaA gi|27314461|gb|AAO03598.1|AE016744_1 chromosomal replication initiator protein [Staphylococcus epidermidis ATCC 12228] gi|281296437|gb|EFA88952.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis SK135] gi|329724160|gb|EGG60678.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU144] Length = 451 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 259/471 (54%), Gaps = 34/471 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLET 92 + + I R+ N Y ++ + + +S+ ++ I+ +S+P N +W+ RY E Sbjct: 7 WDKVLEIAQERISNTS----YQTFIKDTQLYSLKNDEAIILVSLPFN--ASWLNQRYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + S + + +NT + P + Sbjct: 61 MQAIIYD----VIGYEVKPHFI---------SEDELASYNNVNTQEVQEPQVQHSSIDDK 107 Query: 153 VFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +G + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 108 TWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+ Sbjct: 163 LMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFI 222 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 223 QNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILT 389 R +IL+ ++ E+ L+I E L ++A + ++ REL+GA +L+ + +T Sbjct: 283 TRMAILQKKI-----EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPIT 337 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS Sbjct: 338 TELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLS 397 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 398 RELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448 >gi|329735774|gb|EGG72055.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU028] gi|329736075|gb|EGG72348.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU045] Length = 451 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 259/471 (54%), Gaps = 34/471 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLET 92 + + I R+ N Y ++ + + +S+ ++ I+ +S+P N +W+ RY E Sbjct: 7 WDKVLEIAQERISNTS----YQTFIKDTQLYSLKNDEAIILVSLPFN--ASWLNQRYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + S + + +NT + P + Sbjct: 61 MQAIIYD----VIGYEVKPHFI---------SEDELASYNNVNTKEVQEPQVQHSSIDDK 107 Query: 153 VFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +G + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 108 TWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+ Sbjct: 163 LMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFI 222 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 223 QNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILT 389 R +IL+ ++ E+ L+I E L ++A + ++ REL+GA +L+ + +T Sbjct: 283 TRMAILQKKI-----EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPIT 337 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS Sbjct: 338 TELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLS 397 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 398 RELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448 >gi|94323531|gb|ABF17877.1| chromosomal replication initiator protein [Staphylococcus xylosus] Length = 455 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 248/454 (54%), Gaps = 32/454 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y ++ + K + + +N + + F+ W+K+ Y+E + E G EI+ V Sbjct: 23 YQTFLKDTKLYQLQNNEAIVVIDDPFVANWLKSNYVEIVQSALYE----AIGHEIM--PV 76 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP------VFGSPLDSRFVFSTFI 168 E PS K TN ++ K+ +P + G ++ F TF+ Sbjct: 77 FYTEDELENLKPSKNK----ETNEAER----FKKEYTPGVDEAVIGGEQFNTHNTFETFV 128 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G NR A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + P+ + Sbjct: 129 IGPGNRFPHAASLAVAEAPAQAY-----NPLFIYGGVGLGKTHLMHAIGHYVLANNPDAK 183 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q K Q EF H N L Sbjct: 184 VIYTSSEKFTNEFIKSIRDNKTERFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNEL 243 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ + Sbjct: 244 HQANKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKIG-----E 298 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADELLSHLVNTGET 406 L+I E L ++A + ++ REL+GA + L F +T E+ L ++ + Sbjct: 299 ENLDIPTEALTYIANQIQSNIRELEGALTRVLAFSKLQGQPITTELTAAALKDIIQAPRS 358 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ +T S P+IG FG Sbjct: 359 KKITIQDIQKIVGQYYSVKIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGG 418 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RDHTTV+HA K+ K ++ D T K+EVE L++ I Sbjct: 419 RDHTTVIHAHEKIVKDIQNDPTFKQEVENLEKEI 452 >gi|89892747|ref|YP_516234.1| ATPase involved in DNA replication initiation [Desulfitobacterium hafniense Y51] gi|219666072|ref|YP_002456507.1| chromosomal replication initiator protein DnaA [Desulfitobacterium hafniense DCB-2] gi|89332195|dbj|BAE81790.1| ATPase involved in DNA replication initiation [Desulfitobacterium hafniense Y51] gi|219536332|gb|ACL18071.1| chromosomal replication initiator protein DnaA [Desulfitobacterium hafniense DCB-2] Length = 449 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 251/460 (54%), Gaps = 31/460 (6%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S+L+N++ + +W + + + +SVP F K W+++RY I Q + Sbjct: 15 SKLENELSKPSFETWLSSTYLLDIEGDTLIVSVPNEFAKDWLESRYAPIIRSTVQSILGQ 74 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + LV S+ E T + K S P L+S++ Sbjct: 75 SMNLRFLVTSIH----ETTQPGDNQNKAS-------------SNSKAEPADNKTLNSKYT 117 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TF+ G+SNR A AA ++AE + Y NPLFI+ VGLGKTHL+ AI NA I+R Sbjct: 118 FDTFVIGNSNRFAHAAALAVAESPALAY-----NPLFIYGGVGLGKTHLMHAIGNAVIQR 172 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCH 282 P+ RV+Y+++E F +IRD + ++ RN+D+LLIDD+QFL GK Q EF H Sbjct: 173 SPSTRVLYVSSEKFTNELIESIRDQNPIEFRNHYRNVDILLIDDIQFLAGKEGTQEEFFH 232 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + + Sbjct: 233 TFNALHDANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAKL 292 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHL 400 L + EV++++A + ++ REL+GA +++ S PI T E A E L + Sbjct: 293 EN-----LQVANEVMVYIADKIHSNIRELEGALIRVMAVGSLTSNPI-TVETAAEALKDI 346 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + K++ IE IQ+ VA Y++S + + +R R V PRQ+AMYLS+ +T S P I Sbjct: 347 IPVSTPKEITIEMIQQAVADFYHLSLGEFKAKKRTRAVAFPRQIAMYLSRELTDNSLPRI 406 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 G FG RDHTTVLHA K+ + + D L +++ + ++I Sbjct: 407 GDEFGGRDHTTVLHAYDKISESRQNDPLLDRKINEIIQMI 446 >gi|298290019|ref|YP_003691958.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] gi|296926530|gb|ADH87339.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] Length = 412 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/352 (41%), Positives = 213/352 (60%), Gaps = 6/352 (1%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P F SP D+ F+ + G NR L A + S R NPLF+H GLGKTH Sbjct: 63 PSF-SPRDAALTFARYCVGECNR--LAHAAACDVAASAPGLMPRFNPLFVHGGTGLGKTH 119 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LLQA+A A+ + RV YLTAE FM+ F +A++ + + IDLLL+DD+Q L Sbjct: 120 LLQALAQAA--EESGRRVAYLTAERFMFGFVAAMKTGTTEDFRARFGEIDLLLLDDVQGL 177 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +Q F LN+L+D+ +QVV AADR P +L++ D R+RSRL G+ + L D E+ Sbjct: 178 HGKSVQQAFSSALNALMDAHRQVVIAADRHPGDLDAFDERLRSRLGAGLVIELRSLDDEV 237 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +I+ + + P + +V +A + R+L GA N+L+ H F + +T Sbjct: 238 RAAIIAAQAERAAVLSPGFALPVDVARFLASDGRMNARDLAGAVNRLLAPHQFGGVEITM 297 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A +L ++ TGE +++R++DI R+V K + ++ D+LS RR VVRPRQ+AMYL+K Sbjct: 298 DMAQAVLRDVIRTGEPRRVRVDDILRVVTKQFGVTLADILSQRRTANVVRPRQIAMYLAK 357 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T RS PEIGRRFG RDHTTVLHAVRK++ + D L+ E++ L+ I E Sbjct: 358 TLTLRSLPEIGRRFGGRDHTTVLHAVRKMDGLRSHDAKLRAELDDLEAKIME 409 >gi|256751455|ref|ZP_05492333.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus CCSD1] gi|256749674|gb|EEU62700.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus CCSD1] Length = 443 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 261/459 (56%), Gaps = 38/459 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ P Y +W +K +++ +++ LS P F K I RY+ I + +++ Sbjct: 16 IKSELTPTSYNTWLVHIKPLAIIDDVLFLSTPNTFTKNIINGRYINIIYDAASKATNKLY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++IL E SI K N+++S + S L+ ++ F Sbjct: 76 EIKILSED----EEEYREIKESIEK-----ENLTESTTL-----------STLNPKYTFD 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKTHL+ AI + K Q Sbjct: 116 TFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHFINKHQS 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF+ K Q EF H Sbjct: 171 GYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DYE R +ILK + +Q Sbjct: 231 NTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKK---AQ 287 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN-- 402 E+ LNI +EVL +VA + ++ REL+GA ++V +F+ + I EL H + Sbjct: 288 TEN--LNIPDEVLAYVAEKIQSNIRELEGALIRIV---AFSNLTKTNIDLELAKHALKEI 342 Query: 403 -TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + +T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL++ +T S P+IG Sbjct: 343 VSNKTREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYLARELTDLSLPKIG 402 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 403 EEFG-KDHTTVIHAYEKISNEIKQDELLSRQIEELKKRI 440 >gi|251811364|ref|ZP_04825837.1| replication initiation protein DnaA [Staphylococcus epidermidis BCM-HMP0060] gi|251805113|gb|EES57770.1| replication initiation protein DnaA [Staphylococcus epidermidis BCM-HMP0060] Length = 455 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 259/471 (54%), Gaps = 34/471 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLET 92 + + I R+ N Y ++ + + +S+ ++ I+ +S+P N +W+ RY E Sbjct: 11 WDKVLEIAQERISNTS----YQTFIKDTQLYSLKNDEAIILVSLPFN--ASWLNQRYSEI 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + S + + +NT + P + Sbjct: 65 MQAIIYD----VIGYEVKPHFI---------SEDELASYNNVNTQEVQEPQVQHSSIDDK 111 Query: 153 VFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +G + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 112 TWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+ Sbjct: 167 LMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFI 226 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 227 QNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILT 389 R +IL+ ++ E+ L+I E L ++A + ++ REL+GA +L+ + +T Sbjct: 287 TRMAILQKKI-----EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPIT 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS Sbjct: 342 TELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 402 RELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 452 >gi|293367580|ref|ZP_06614233.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318293|gb|EFE58686.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)] Length = 455 Score = 264 bits (674), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 259/471 (54%), Gaps = 34/471 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLET 92 + + I R+ N Y ++ + + +S+ ++ I+ +S+P N +W+ RY E Sbjct: 11 WDKVLEIAQERISNTS----YQTFIKDTQLYSLKNDEAIILVSLPFN--ASWLNQRYSEI 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + S + + +NT + P + Sbjct: 65 MQAIIYD----VIGYEVKPHFI---------SEDELASYNNVNTKEVQEPQVQHSSIDDK 111 Query: 153 VFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +G + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 112 TWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+ Sbjct: 167 LMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFI 226 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 227 QNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILT 389 R +IL+ ++ E+ L+I E L ++A + ++ REL+GA +L+ + +T Sbjct: 287 TRMAILQKKI-----EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPIT 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS Sbjct: 342 TELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 402 RELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 452 >gi|256821229|ref|YP_003145192.1| chromosomal replication initiator protein DnaA [Kangiella koreensis DSM 16069] gi|256794768|gb|ACV25424.1| chromosomal replication initiator protein DnaA [Kangiella koreensis DSM 16069] Length = 461 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 158/470 (33%), Positives = 263/470 (55%), Gaps = 34/470 (7%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK-LFQEEHSR 103 +L++++ + +W + L+ + L P F WI+ +YL+ I + L Q ++++ Sbjct: 12 KLQSELSATEFNTWIKPLQVKETDSEMA-LYAPNPFFVDWIRQQYLDRINEFLIQRDNNQ 70 Query: 104 IQGVEILVRSVALPSVEKT----------ASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + + V +VA + + A++PS +K N +I++S S Sbjct: 71 QKHISLHVGNVAQIVNQNSNSQAVNNNHNAATPSNSKPVAQNNHINQS---------SGF 121 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ +F+FS+F+EG SN++A AAQ + E Y NPLFI+ VGLGKTHL+ Sbjct: 122 QQNNLNPKFLFSSFVEGKSNQLARAAAQQVVENPGEAY-----NPLFIYGGVGLGKTHLM 176 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 ++ N+ + + PN +VYL +E FM A++ K+ R++D LLIDD+QF Sbjct: 177 HSVGNSILDKNPNAHIVYLHSERFMANMVKALQTGTMDKFKNFYRSVDALLIDDIQFFAN 236 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L++ KQV+ DR P E+E L+ R++SR G++V + + E R Sbjct: 237 KGRTQEEFFHTFNNLIEKNKQVIITCDRFPKEVEGLEERLKSRFGWGLTVAVEPPELETR 296 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL +S+ + K+ + EV +A+ + ++ REL+GA +++ F +T + Sbjct: 297 VAIL-----MSKAQSSKIELPNEVAFFIAKRIRSNVRELEGALKRVIANAQFTGRAITLD 351 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + L L+ + K + IE+IQ+ VA +Y I +DLLS RR R++ RPRQ+AM L+K Sbjct: 352 FVKDALKDLI-AAQDKLISIENIQKTVASYYKIKVSDLLSQRRSRSIARPRQMAMALAKN 410 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG +DHTTVLHA RK+E++ I ++++ L R +S Sbjct: 411 LTNHSLPEIGDAFGGKDHTTVLHACRKIEQLKGESIDIEEDFSNLLRTLS 460 >gi|145634169|ref|ZP_01789880.1| chromosomal replication initiation protein [Haemophilus influenzae PittAA] gi|148826359|ref|YP_001291112.1| chromosomal replication initiation protein [Haemophilus influenzae PittEE] gi|145268613|gb|EDK08606.1| chromosomal replication initiation protein [Haemophilus influenzae PittAA] gi|148716519|gb|ABQ98729.1| chromosomal replication initiation protein [Haemophilus influenzae PittEE] Length = 454 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 264/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q + Q E+ ++L E +P I + +P T S+S + ++ +P Sbjct: 61 IQQICQ---TLAQNPEL---RISLK--EGVKPAPKIVESTPNTTLRSESAVDFQTESNTP 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 IKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|242372602|ref|ZP_04818176.1| replication initiation protein DnaA [Staphylococcus epidermidis M23864:W1] gi|242349657|gb|EES41258.1| replication initiation protein DnaA [Staphylococcus epidermidis M23864:W1] Length = 455 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 153/456 (33%), Positives = 256/456 (56%), Gaps = 40/456 (8%) Query: 55 YASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 Y ++ + + +S+ ++ I+ S+P N +W+ RY E + + + + G E+ Sbjct: 27 YHTFIKDTQLYSLKNDEAIILTSLPFN--ASWLNQRYSEIMQAIIYD----VIGYEVKPH 80 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-----FGSP-LDSRFVFST 166 + + + S + ++ ++ P QT +P +G ++ F T Sbjct: 81 FI---------TEDELANYSNVTSHATQEP-----QTAAPTHDENNWGKEQFNTHNTFDT 126 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + QPN Sbjct: 127 FVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHLMHAIGHHVLSNQPN 181 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q K Q EF H N Sbjct: 182 AKVIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFN 241 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ Sbjct: 242 ELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKI----- 296 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTG 404 E+ L+I E L ++A + ++ REL+GA +L+ + +T E+ E L ++ Sbjct: 297 EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELTAEALKDIIQAP 356 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ +T S P+IG F Sbjct: 357 KSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEF 416 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 G RDHTTV+HA K+ ++ D T K+EVE L++ I Sbjct: 417 GGRDHTTVIHAHEKIVNDIKADPTFKQEVENLEKEI 452 >gi|152977689|ref|YP_001343318.1| chromosomal replication initiation protein [Actinobacillus succinogenes 130Z] gi|171472899|sp|A6VK86|DNAA_ACTSZ RecName: Full=Chromosomal replication initiator protein DnaA gi|150839412|gb|ABR73383.1| chromosomal replication initiator protein DnaA [Actinobacillus succinogenes 130Z] Length = 455 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 262/471 (55%), Gaps = 23/471 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N S++ +L++QV D + W + L+ N + + V F + W++N YL I Sbjct: 4 NTSSLWADCLLQLQDQVPADKFQMWLRPLQADISSPNQLTIYVQNFFSRQWVENNYLADI 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 TKL ++ V LV V P+ + + + T + + +Q + V Sbjct: 64 TKLARQLTGNPDFVVKLVEGV----------KPAPKQNNIVTTKQNAETAVDSEQHLQSV 113 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F + L+S +F F+EG SN++A +A ++ G T NPLF++ GLGKTHL Sbjct: 114 EFKTGLNSNHLFENFVEGKSNQLARAVGIKVA--NNPGDKTA--NPLFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + P RV+Y+ AE F+ + A + A N K RN+D LLIDD+QF Sbjct: 170 LHAVGNGILANNPKARVLYIHAERFVQEYVKATKLGAAENFKKFYRNLDALLIDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK L Q EF + N+L + KQ++ +DR P E+E ++ R++SR G+SV + + E Sbjct: 230 GKELTQEEFFNTFNNLFEGEKQIILTSDRYPREIEKIEDRLKSRFSWGLSVAIEPPELET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ +N+ EEV + + + T REL+GA N+++ F +T Sbjct: 290 RVAIL-----MKKAEERGVNLAEEVAFFIGQKLRTHVRELEGALNRVIANAEFTGKTITI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + K + I++IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDMLAL-QDKLVTIDNIQKVVAEYYRIKVSDLNSKNRSRSVARPRQLAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RSFPEIG+ FG +DHTTV++A K++++ ETD +++++ L R +S Sbjct: 404 ELTNRSFPEIGKNFGGKDHTTVIYACDKIQELRETDSSIQEDWSNLIRTLS 454 >gi|308047723|ref|YP_003911289.1| chromosomal replication initiator protein DnaA [Ferrimonas balearica DSM 9799] gi|307629913|gb|ADN74215.1| chromosomal replication initiator protein DnaA [Ferrimonas balearica DSM 9799] Length = 468 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 160/464 (34%), Positives = 261/464 (56%), Gaps = 28/464 (6%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE---EH 101 RL++++ ++ W + L+ ++ + + L P F+ W++++YL +IT E + Sbjct: 25 RLRDELPAQQFSMWIRPLQ-AELMGDTLVLYAPNRFVLDWVRDKYLNSITAFLAETLGDQ 83 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSIT-KLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + +I + A P V+ P+ SP+ T P Q++ S ++ Sbjct: 84 APALQFDIGSKPEARPKVDIGTPRPAAAVPASPVRT----EPPASSNQSVR----SNINP 135 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 + F F+EG SN++A AA +A+ Y NPLF++ GLGKTHLL A+ N Sbjct: 136 NYQFDNFVEGKSNQLARAAASQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGI 190 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 +KR+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Q E Sbjct: 191 MKRKPNAKVVYMHSERFVQDMVKALQNNAIAEFKRYYRSVDALLIDDIQFFANKDRSQEE 250 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R +IL Sbjct: 251 FFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAIL--- 307 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELL 397 + + E+ +++ +EV +A+ + ++ REL+GA N+++ +F PI T + E L Sbjct: 308 --MRKAEESNIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREAL 364 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQVAM L+K +T S Sbjct: 365 RDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQVAMALAKELTNHSL 423 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 424 PEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYANLIRTLS 467 >gi|289551834|ref|YP_003472738.1| Chromosomal replication initiator protein DnaA [Staphylococcus lugdunensis HKU09-01] gi|289181365|gb|ADC88610.1| Chromosomal replication initiator protein DnaA [Staphylococcus lugdunensis HKU09-01] Length = 455 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 149/441 (33%), Positives = 247/441 (56%), Gaps = 22/441 (4%) Query: 63 KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSV-EK 121 + + + +N + V F +W+ +Y + +F+ S I G++I + + + E Sbjct: 31 ELYKIENNTAIVLVGYEFYASWLNQKY----SAIFESIFSEIMGLDITPKFLTAEQLAEI 86 Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + S +K +P ++ + + V ++ F TF+ G NR A+ Sbjct: 87 VSEGDSASKKAPASSKAKAE-----DEHDAHVGTDQFNTHNTFDTFVIGPGNRFPHAASL 141 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 ++AE + Y NPLFI+ VGLGKTHL+ AI + + PN +V+Y ++E F F Sbjct: 142 AVAEAPAEAY-----NPLFIYGGVGLGKTHLMHAIGHHVLSNNPNAKVLYTSSEKFTNEF 196 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 +IRD ++ RNID+LLIDD+QF+Q K Q EF H N L + KQ+V ++DR Sbjct: 197 IKSIRDGENEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDR 256 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ E+ L I E L ++ Sbjct: 257 PPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKM-----EEENLEIPMEALNYI 311 Query: 361 ARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A + ++ REL+GA +L+ + +T E+ E L ++ ++KK+ I+DIQ++V Sbjct: 312 ANQIQSNIRELEGALTRLLAYSQLQGRPITTELTAEALKDIIQVPKSKKITIQDIQKVVG 371 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y++ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA K+ Sbjct: 372 QYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKI 431 Query: 480 EKMLETDITLKKEVELLKRLI 500 ++TD T K+EVE L++ I Sbjct: 432 ANDIKTDSTFKQEVENLEKEI 452 >gi|315659995|ref|ZP_07912853.1| DNA-directed DNA replication initiator protein [Staphylococcus lugdunensis M23590] gi|315494896|gb|EFU83233.1| DNA-directed DNA replication initiator protein [Staphylococcus lugdunensis M23590] Length = 467 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 149/441 (33%), Positives = 247/441 (56%), Gaps = 22/441 (4%) Query: 63 KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSV-EK 121 + + + +N + V F +W+ +Y + +F+ S I G++I + + + E Sbjct: 43 ELYKIENNTAIVLVGYEFYASWLNQKY----SAIFESIFSEIMGLDITPKFLTAEQLAEI 98 Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + S +K +P ++ + + V ++ F TF+ G NR A+ Sbjct: 99 VSEGDSASKKAPASSKAKAE-----DEHDAHVGTDQFNTHNTFDTFVIGPGNRFPHAASL 153 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 ++AE + Y NPLFI+ VGLGKTHL+ AI + + PN +V+Y ++E F F Sbjct: 154 AVAEAPAEAY-----NPLFIYGGVGLGKTHLMHAIGHHVLSNNPNAKVLYTSSEKFTNEF 208 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 +IRD ++ RNID+LLIDD+QF+Q K Q EF H N L + KQ+V ++DR Sbjct: 209 IKSIRDGENEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDR 268 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ E+ L I E L ++ Sbjct: 269 PPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKM-----EEENLEIPMEALNYI 323 Query: 361 ARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A + ++ REL+GA +L+ + +T E+ E L ++ ++KK+ I+DIQ++V Sbjct: 324 ANQIQSNIRELEGALTRLLAYSQLQGRPITTELTAEALKDIIQVPKSKKITIQDIQKVVG 383 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y++ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA K+ Sbjct: 384 QYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKI 443 Query: 480 EKMLETDITLKKEVELLKRLI 500 ++TD T K+EVE L++ I Sbjct: 444 ANDIKTDSTFKQEVENLEKEI 464 >gi|309751341|gb|ADO81325.1| Chromosomal replication initiator protein [Haemophilus influenzae R2866] Length = 454 Score = 263 bits (673), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 259/460 (56%), Gaps = 22/460 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV ++W + L+ V N + L F+K W++ YL I ++ Q + Sbjct: 13 QLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQIQQICQ---TLA 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFV 163 Q E+ ++L E +P I + +P T S+S + ++ +P+ F S L+++ + Sbjct: 70 QNPEL---RISLK--EGVKPAPKIVESTPNTTLRSESAVDFQTESSTPIKFESHLNTKHL 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A Q +A+ NP F++ GLGKTHLL AI N + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILAN 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF H Sbjct: 181 KPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL + Sbjct: 241 IFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ LN+ EEV +A+ + T+ REL+GA N++ F + + + L ++ Sbjct: 296 KKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDIL 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K +T RS PEIG Sbjct: 356 ALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 RAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|168207736|ref|ZP_02633741.1| chromosomal replication initiator protein DnaA [Clostridium perfringens E str. JGS1987] gi|170660929|gb|EDT13612.1| chromosomal replication initiator protein DnaA [Clostridium perfringens E str. JGS1987] Length = 457 Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 152/457 (33%), Positives = 257/457 (56%), Gaps = 21/457 (4%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + S+ NI+ LSVP F K + RY + + + + SR Sbjct: 16 IKGEISEISFNTWIKSCTPISISDNILKLSVPNEFTKGILDTRYKDLLIQALKIVTSRKF 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E + S E+ + + NTN I+ +S + L+ ++ F Sbjct: 76 KIEFYLES---DLEEEKENEEKQKEQKKDNTNDVDGSIV-----VSDEMSATLNPKYTFQ 127 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ P Sbjct: 128 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILQENP 182 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F +AI+D+ ++ R +D+LLIDD+QF+ GK Q EF H Sbjct: 183 KAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFHTF 242 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 243 NALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADVE- 301 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNT 403 LN+ EV++++A + ++ REL+GA +++ S ++ ++A E L +++ Sbjct: 302 ----GLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKDIISN 357 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 E+ + ++ IQ VA +YN+ DL S RR R + PRQ+AMYLS+ +T S P+IG Sbjct: 358 KESAPVTVKTIQESVANYYNLRIEDLKSQRRTRNIAYPRQIAMYLSRKLTDMSLPKIGEE 417 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 FG RDHTTV+HA K+ + L+TD L+ + ++ K+L Sbjct: 418 FGGRDHTTVIHAYEKISENLKTDEGLQSMINDITKKL 454 >gi|145628065|ref|ZP_01783866.1| chromosomal replication initiation protein [Haemophilus influenzae 22.1-21] gi|144979840|gb|EDJ89499.1| chromosomal replication initiation protein [Haemophilus influenzae 22.1-21] gi|301169719|emb|CBW29320.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae 10810] Length = 454 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 260/460 (56%), Gaps = 22/460 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV ++W + L+ V +N + L F+K W++ YL I ++ Q + Sbjct: 13 QLQDQVSASDLSTWLRPLQADVVSNNHIVLYASNMFVKGWVETHYLAQIQQICQ---TLA 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFV 163 Q E+ ++L E +P I + +P T S+S + ++ +P+ F S L+++ + Sbjct: 70 QNPEL---RISLK--EGVKPAPKIVESTPNTTLRSESAVDFQTESSTPIKFESHLNTKHL 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A Q +A+ NP F++ GLGKTHLL AI N + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILAN 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF H Sbjct: 181 KPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL + Sbjct: 241 IFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ +N+ EEV +A+ + T+ REL+GA N++ F + + + L ++ Sbjct: 296 KKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDIL 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K +T RS PEIG Sbjct: 356 ALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 RAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|56552252|ref|YP_163091.1| chromosomal replication initiation protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761682|ref|ZP_04759769.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752246|ref|YP_003225139.1| chromosomal replication initiation protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59802902|sp|Q9S493|DNAA_ZYMMO RecName: Full=Chromosomal replication initiator protein DnaA gi|56543826|gb|AAV89980.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis ZM4] gi|241373990|gb|EER63523.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551609|gb|ACV74555.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 484 Score = 263 bits (671), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 159/485 (32%), Positives = 261/485 (53%), Gaps = 59/485 (12%) Query: 46 LKNQVGPDVYASWFQRL---KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 L+ + G + SW + L F S I+ L+ P+ F+ WI + + + Sbjct: 23 LRKKCGSRTFESWLKSLMLADFDSQ-KKIIRLACPSEFMANWISSHLSDEL--------- 72 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI------------ 150 +L P + + S + P+ ++++ + LG Q Sbjct: 73 ------LLAWRTVWPGIAEVKVSVRNPESQPLLLDVTEIELPLGDQPRPLPKKPAKKKQS 126 Query: 151 ---SPVFGSP-----------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 +P SP + R+ F F+ G +N +A AA + AE + Sbjct: 127 VPATPKSTSPEKKAEGEDQNQFEERYNFDNFVVGKANDLAYRAACTFAEGGKLDF----- 181 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ GLGKTHL+ A+ +KR PN +Y++AE FM+ F +++R + K Sbjct: 182 NPLFLYGGTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKAR 241 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR+ DLL+IDD+QF+ GK Q EF H +N ++ + +++V +ADR P +LE ++ RI SR Sbjct: 242 LRSADLLMIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISADRSPQDLERIESRILSR 301 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L G+ + D+E+R +I+ +L P++++ E+++ +A+ + T+ REL+GA Sbjct: 302 LSWGLVADVNPADFELRLNIILKKLEAM----PQVSMPEDIVFFLAKRICTNVRELEGAL 357 Query: 376 NQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N++V + + PI + E L+ L+ T + +++ +EDIQ+ V HY++ D+ S R Sbjct: 358 NRVVAYATLSNRPI-NMDFVTETLADLLRTTQ-QRVTVEDIQKRVCDHYHLKLADMSSKR 415 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R + RPRQVAMYLSK +T RS PEIG+RFG RDHTTV+HA+R++EK+ TD + +V Sbjct: 416 RDRVIARPRQVAMYLSKQLTSRSLPEIGQRFGGRDHTTVIHAIRQIEKLRITDEDVDSDV 475 Query: 494 ELLKR 498 LL R Sbjct: 476 RLLMR 480 >gi|187935721|ref|YP_001884266.1| chromosomal replication initiation protein [Clostridium botulinum B str. Eklund 17B] gi|226735792|sp|B2THB4|DNAA_CLOBB RecName: Full=Chromosomal replication initiator protein DnaA gi|187723874|gb|ACD25095.1| chromosomal replication initiator protein DnaA [Clostridium botulinum B str. Eklund 17B] Length = 456 Score = 263 bits (671), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 263/459 (57%), Gaps = 21/459 (4%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ + +W + + S+ + +SVP +F K + RY + + S++ Sbjct: 16 VKSEMSEVSFNTWIKSCEPISISDTSIKISVPNSFTKDILDKRYKSLVANSIEAVCSKLY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++ ++ S L + ++ +S + K N S+ I++ + S L+ ++ F+ Sbjct: 76 EIKFIIES-DLNNEDELNNSDNSDKNRDKN---SRRNIVVNDE-----MSSTLNPKYTFN 126 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ Sbjct: 127 SFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILQNNT 181 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F +AI+D+ + RN+D+LLIDD+QF+ GK Q EF H Sbjct: 182 KAKVVYVSSEKFTNELINAIKDDKNEEFRKKYRNVDVLLIDDIQFIAGKERTQEEFFHTF 241 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + + D+E R +ILK + + Sbjct: 242 NELHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDFETRMAILKKKADVEN 301 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNT 403 L + EV+ ++A + ++ REL+GA +++ S +T ++A E L +++ Sbjct: 302 -----LKVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREVTVDLASEALKDIISK 356 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + K + I IQ +VA ++N+ +DL S RR R V PRQ+AMYLS+ +T S P+IG Sbjct: 357 KQGKHVTIPSIQEIVANYFNLKIDDLKSQRRTRNVAYPRQIAMYLSRKLTDMSLPKIGEE 416 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTV+HA K+ + L++D +L+ V + + +S+ Sbjct: 417 FGGRDHTTVIHAYEKISENLKSDESLQHTVSDITKKVSQ 455 >gi|307265438|ref|ZP_07546994.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter wiegelii Rt8.B1] gi|306919552|gb|EFN49770.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter wiegelii Rt8.B1] Length = 443 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 155/459 (33%), Positives = 262/459 (57%), Gaps = 38/459 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ P Y +W +K +++ +++ LS P F K I RY+ I + +++ Sbjct: 16 IKSELTPTSYNTWLVHIKPLAIIDDVLFLSTPNTFTKNIINGRYINIIYDAASKATNKLY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++IL E S+ K N+++S + S L+ ++ F Sbjct: 76 EIKILSED----EEEYREIRESLEK-----ENLTESTTL-----------STLNPKYTFD 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKTHL+ AI + K Q Sbjct: 116 TFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHFINKHQS 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF+ K Q EF H Sbjct: 171 GYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIAKKERTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DYE R +ILK + +Q Sbjct: 231 NTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRIAILKKK---AQ 287 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN-- 402 E+ LNI +EVL +VA + ++ REL+GA ++V +F+ + + I EL H + Sbjct: 288 TEN--LNIPDEVLAYVAEKIQSNIRELEGALIRIV---AFSNLTKSNIDLELTKHALKEI 342 Query: 403 -TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + +T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL++ +T S P+IG Sbjct: 343 VSNKTREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYLARELTDLSLPKIG 402 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 403 EEFG-KDHTTVIHAYEKISNEIKQDELLSRQIEELKKRI 440 >gi|314934960|ref|ZP_07842319.1| DNA replication initiator protein, ATPase [Staphylococcus caprae C87] gi|313652890|gb|EFS16653.1| DNA replication initiator protein, ATPase [Staphylococcus caprae C87] Length = 451 Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 134/340 (39%), Positives = 210/340 (61%), Gaps = 12/340 (3%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + Sbjct: 119 TFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHLMHAIGHHVLS 173 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 QP+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q K Q EF Sbjct: 174 NQPSAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFF 233 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ Sbjct: 234 HTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKI- 292 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHL 400 E+ L+I E L ++A + ++ REL+GA +L+ + +T E+A E L + Sbjct: 293 ----EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDI 348 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ +T S P+I Sbjct: 349 IQAPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKI 408 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 G FG RDHTTV+HA K+ ++ D T K+E+E L++ I Sbjct: 409 GEEFGGRDHTTVIHAHEKIANDIKADPTFKQEIENLEKEI 448 >gi|325288202|ref|YP_004264383.1| chromosomal replication initiator protein DnaA [Syntrophobotulus glycolicus DSM 8271] gi|324963603|gb|ADY54382.1| chromosomal replication initiator protein DnaA [Syntrophobotulus glycolicus DSM 8271] Length = 446 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 159/462 (34%), Positives = 259/462 (56%), Gaps = 39/462 (8%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L+N++ + +W K S ++N + +SV F K W+++RY I Q Sbjct: 18 KLRNELSKASFDTWLSSTKLVSFVNNRLTISVSNEFAKDWLESRYSALIKSTVQN----- 72 Query: 105 QGVEILVRSVALPSV--EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 L R VAL V ++ P I I +N K I+ PL+ ++ Sbjct: 73 ----YLNRPVALTFVVEQEQNYQPEI-----IESNDQKFGIL----------SHPLNRKY 113 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G+ NR A AA ++AE + Y NPLF++ GLGKTHL+ AI + + Sbjct: 114 TFDTFVIGNGNRFAHAAALAVAESPAKSY-----NPLFLYGGSGLGKTHLMHAIGHIINR 168 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFC 281 P +++VY+T E F +IR + +++ R +DLLLIDD+QFL GK Q EF Sbjct: 169 NFPEMKIVYVTGEQFTNEMIDSIRYERQVEFRNTYRKVDLLLIDDIQFLAGKEGTQEEFF 228 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G++ + DYE R +IL+ + Sbjct: 229 HTFNTLYEANKQIIISSDRPPREIPTLEERLRSRFEWGLTTDINPPDYETRIAILRKKAQ 288 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHL 400 + P +E++ +A ++ ++ REL+GA +++ F +T E+A+E+L + Sbjct: 289 LENYIVP-----DEIITFIASSIQSNIRELEGALSKITAFCMLTNQSITVELAEEILKDM 343 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + K + IE IQ+ VA+HY +S N+L +R RT+ PRQVAMY+S+ +T S P+I Sbjct: 344 IPNRNQKIISIELIQKTVAEHYKMSVNELKQKKRTRTIAFPRQVAMYISRQLTDCSLPQI 403 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRLIS 501 G +FG RDHTTV+HA K+ +M E D ++K + E++ ++ S Sbjct: 404 GEKFGGRDHTTVIHAFDKISEMKEHDPFVEKSINEIINKIKS 445 >gi|15893299|ref|NP_346648.1| chromosomal replication initiation protein [Clostridium acetobutylicum ATCC 824] gi|38257741|sp|Q97N35|DNAA_CLOAB RecName: Full=Chromosomal replication initiator protein DnaA gi|15022818|gb|AAK77988.1|AE007513_1 DNA replication initiator protein, ATPase [Clostridium acetobutylicum ATCC 824] gi|325507408|gb|ADZ19044.1| chromosomal replication initiation protein [Clostridium acetobutylicum EA 2018] Length = 446 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 260/461 (56%), Gaps = 40/461 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + + S+ + + LSVP F K ++NRY + I + ++ Sbjct: 16 IKGELTEVSFNTWIKSITPISIDKDSIRLSVPNQFTKEILENRYKDLIINSMKIITTKKY 75 Query: 106 GVEILVRSV-ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 + L+ S AL + E T + +NT+ S S L+ ++ F Sbjct: 76 DIAFLISSEEALETDEDQE-----TDTNNVNTDTS---------------SSMLNPKYKF 115 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 +F+ G+SNR A A ++AE + Y NPLFI+ VGLGKTHL+QAI + + Sbjct: 116 DSFVIGNSNRFAHAACLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMQAIGHYILDNN 170 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P +VVY+++E F ++I+D+ + ++ RN+D+LLIDD+QF+ GK Q EF H Sbjct: 171 PKAKVVYVSSEKFTNELINSIKDDKNVEFRNKYRNVDVLLIDDVQFIAGKERTQEEFFHT 230 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 231 FNALHENNKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRIAILKKKADVE 290 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSH 399 LNI +V++++A + ++ REL+GA ++V +F+ + EI A E L Sbjct: 291 H-----LNIPNDVMVYIATQIKSNIRELEGALIRIV---AFSSLTNKEISVDLASEALKD 342 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 ++++ + K++ I+ IQ +V+ ++N+ D S RR + + PRQ+AMYLS+ +T S P+ Sbjct: 343 IISSKQNKQITIDLIQDVVSSYFNLRIEDFKSARRTKNIAFPRQIAMYLSRKLTDMSLPK 402 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 IG FG RDHTTV+HA K+ L+ D LK + E+ KR Sbjct: 403 IGEAFGGRDHTTVIHAYEKISSALKEDDDLKYTINEITKRF 443 >gi|295694687|ref|YP_003587925.1| chromosomal replication initiator protein DnaA [Bacillus tusciae DSM 2912] gi|295410289|gb|ADG04781.1| chromosomal replication initiator protein DnaA [Bacillus tusciae DSM 2912] Length = 450 Score = 262 bits (670), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 162/476 (34%), Positives = 256/476 (53%), Gaps = 36/476 (7%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 +D R +E+ +S+ S L+ Q+ P + +W + ++ N + + VP + W+ Sbjct: 1 MDPRAVELWEQSL-----SILRTQISPSTFETWLLKASPVTLDANTLVVRVPNMLARDWL 55 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSV--EKTASSPSITKLSPINTNISKSPI 143 + Y T L QE I+ + VR V SV E+ AS + +P+ T+ P Sbjct: 56 ERHY----TPLVQEALYTIRREPLYVRFVLPDSVPYEQPASQATAASPAPVRTHDDFPP- 110 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 L S++ F +F+ G +NR A A ++AE S Y NPLFI+ Sbjct: 111 ------------PQLSSKYTFESFVVGENNRFAHAACLAVAEAPSLSY-----NPLFIYG 153 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+QAI + +K P RVVY++ E F F +AI + ++ R++D+L Sbjct: 154 GVGLGKTHLMQAIGHYVLKHHPEKRVVYISTEQFTNEFINAILYKTVPDFRNRYRSVDIL 213 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+QFL GK Q EF H N+L KQ+V ++DRPP E+ +L+ R+RSR + G+ Sbjct: 214 LVDDVQFLAGKEQTQEEFFHTFNTLHLEGKQIVLSSDRPPKEIPTLEDRLRSRFESGLIT 273 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D+E R +IL+ + L+I E+V+ +A V T+ REL+GA ++V Sbjct: 274 DIQPPDFETRVAILRKKAKAE-----GLDIGEDVISFIASKVNTNIRELEGALIRIVAYS 328 Query: 383 SFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 S + +E+A E L ++N + + + DIQ+ VA+ +++ DL + +R + V P Sbjct: 329 SVVNQDMNSELAAEALKDIINADRKQTITVSDIQKAVAEQFSLRVEDLKAKKRTKAVAFP 388 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 RQ+AMYL++ MT S P IG FG RDHTTV+HA K+ + D L + ++ LK Sbjct: 389 RQIAMYLAREMTSLSLPRIGMEFGGRDHTTVMHAHEKIIRAQAEDPDLAELIQHLK 444 >gi|18308983|ref|NP_560917.1| chromosomal replication initiation protein [Clostridium perfringens str. 13] gi|110799791|ref|YP_694476.1| chromosomal replication initiation protein [Clostridium perfringens ATCC 13124] gi|168218306|ref|ZP_02643931.1| chromosomal replication initiator protein DnaA [Clostridium perfringens NCTC 8239] gi|169343457|ref|ZP_02864457.1| chromosomal replication initiator protein DnaA [Clostridium perfringens C str. JGS1495] gi|182627054|ref|ZP_02954779.1| chromosomal replication initiator protein DnaA [Clostridium perfringens D str. JGS1721] gi|38257694|sp|Q8XPG2|DNAA_CLOPE RecName: Full=Chromosomal replication initiator protein DnaA gi|123149082|sp|Q0TV64|DNAA_CLOP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|18143658|dbj|BAB79707.1| chromosomal replication initiator protein [Clostridium perfringens str. 13] gi|110674438|gb|ABG83425.1| chromosomal replication initiator protein DnaA [Clostridium perfringens ATCC 13124] gi|169298409|gb|EDS80498.1| chromosomal replication initiator protein DnaA [Clostridium perfringens C str. JGS1495] gi|177907580|gb|EDT70219.1| chromosomal replication initiator protein DnaA [Clostridium perfringens D str. JGS1721] gi|182379693|gb|EDT77172.1| chromosomal replication initiator protein DnaA [Clostridium perfringens NCTC 8239] Length = 457 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 151/457 (33%), Positives = 255/457 (55%), Gaps = 21/457 (4%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + S+ NI+ LSVP F K + RY + + + + SR Sbjct: 16 IKGEISEISFNTWIKSCTPISISDNILKLSVPNEFTKGILDTRYKDLLIQALKIVTSRKF 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E + S L ++ K N + G +S + L+ ++ F Sbjct: 76 KIEFYLES-DLEEEKENEEKQKEEKKENTND-------VDGSIVVSDEMSATLNPKYTFQ 127 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ P Sbjct: 128 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILQENP 182 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F +AI+D+ ++ R +D+LLIDD+QF+ GK Q EF H Sbjct: 183 KAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFHTF 242 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 243 NALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADVE- 301 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNT 403 LN+ EV++++A + ++ REL+GA +++ S ++ ++A E L +++ Sbjct: 302 ----GLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKDIISN 357 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 E+ + ++ IQ VA +YN+ DL S RR R + PRQ+AMYLS+ +T S P+IG Sbjct: 358 KESAPVTVKTIQESVANYYNLRIEDLKSQRRTRNIAYPRQIAMYLSRKLTDMSLPKIGEE 417 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 FG RDHTTV+HA K+ + L+TD L+ + ++ K+L Sbjct: 418 FGGRDHTTVIHAYEKISENLKTDEGLQSMINDITKKL 454 >gi|223043484|ref|ZP_03613530.1| chromosomal replication initiator protein DnaA [Staphylococcus capitis SK14] gi|222443273|gb|EEE49372.1| chromosomal replication initiator protein DnaA [Staphylococcus capitis SK14] Length = 450 Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 134/340 (39%), Positives = 210/340 (61%), Gaps = 12/340 (3%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + + Sbjct: 119 TFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHLMHAIGHHVLS 173 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 QP+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q K Q EF Sbjct: 174 NQPSAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQNKEQTQEEFF 233 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE R +IL+ ++ Sbjct: 234 HTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYETRMAILQKKI- 292 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHL 400 E+ L+I E L ++A + ++ REL+GA +L+ + +T E+A E L + Sbjct: 293 ----EEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITTELAAEALKDI 348 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ +T S P+I Sbjct: 349 IQAPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSRELTDFSLPKI 408 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 G FG RDHTTV+HA K+ ++ D T K+E+E L++ I Sbjct: 409 GEEFGGRDHTTVIHAHEKIANDIKADPTFKQEIENLEKEI 448 >gi|284097517|ref|ZP_06385596.1| Chromosomal replication initiator protein dnaA [Candidatus Poribacteria sp. WGA-A3] gi|283830972|gb|EFC35003.1| Chromosomal replication initiator protein dnaA [Candidatus Poribacteria sp. WGA-A3] Length = 451 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 161/466 (34%), Positives = 258/466 (55%), Gaps = 43/466 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +++++G +V +WFQ + + VP F W+ Y E I + Q + Sbjct: 19 IQSRMGDEVIETWFQPTTLGELNGTKATIVVPNKFFGEWLGRNYREVIGEALQAVRPGEE 78 Query: 106 G---VEILV----RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 G VE +V SV + +K ++P T++ +Q +P Sbjct: 79 GKVDVEFIVGQPSTSVVIDQADKPQAAPQQTRVH--------------RQLPNP------ 118 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 ++ F F+ G+SN+ A A+ ++AE + Y NP FI+ VGLGKTHLL +I N Sbjct: 119 --KYTFENFVVGASNQFAHAASLAVAESPARSY-----NPFFIYGGVGLGKTHLLNSIGN 171 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + ++ +LR+ Y+T E F ++IR + L+ RNID+LLIDD+QFL GK Q Sbjct: 172 F-VMQKGDLRIAYVTTEEFTNEVINSIRYDKMSELRRRYRNIDMLLIDDIQFLAGKERTQ 230 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L ++ KQ+V ++DR P E+ S++ R+RSR + G+ L D E R +ILK Sbjct: 231 EEFFHTFNALYEARKQIVLSSDRFPKEMPSMEERLRSRFEWGLIADLQQPDVETRIAILK 290 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADEL 396 + E+ + I ++V+ +A + ++ REL+GA +L + +T ++A + Sbjct: 291 KK-----SEEEGIAIGDDVIHLLAEGLKSNIRELEGALIRLGAYCTLTGQAITTDMAKTV 345 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ + + K + ++D+Q +VA+ + + +L S RR +TVV PRQ+AMYL + +T S Sbjct: 346 LRDLLGS-KKKVITLDDVQDLVARRFQVKVAELKSKRRTKTVVHPRQIAMYLCRELTDAS 404 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FPEIGR FG +DHTT++HA R++EK LE D TL+ VE LK IS+ Sbjct: 405 FPEIGREFGGKDHTTIIHACRQIEKALEKDNTLRATVENLKDEISK 450 >gi|71278268|ref|YP_266783.1| chromosomal replication initiator protein DnaA [Colwellia psychrerythraea 34H] gi|123761122|sp|Q48AS7|DNAA_COLP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|71144008|gb|AAZ24481.1| chromosomal replication initiator protein DnaA [Colwellia psychrerythraea 34H] Length = 461 Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 162/487 (33%), Positives = 263/487 (54%), Gaps = 46/487 (9%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +RCL V L+ ++ ++ W + L+ + N++ L P F+ W+++ Sbjct: 7 QRCLSV------------LQEELPAQQFSMWIRPLQC-VINDNVMTLYAPNRFVLDWVRD 53 Query: 88 RYLETITKLFQEEHSRIQGVEILVR--SVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 +Y+ I +L S +L+R + P+++ + ++ SP++ N + + Sbjct: 54 KYVNRINELLTINES---NNPLLLRFDVGSKPTIDNSVTN------SPVSRNTGGNESLF 104 Query: 146 GKQTISPVFGSPLDS---------RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 K T +P P + + F F+EG SN++A AA +A+ Y Sbjct: 105 AKATSAPKVAEPESNIPKKTNVRLNYTFENFVEGKSNQLARAAASQVADNPGTAY----- 159 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI+ GLGKTHLL A+ N + +PN ++ Y+ +E F+ A+++N K Sbjct: 160 NPLFIYGGTGLGKTHLLHAVGNGILLNKPNAKIAYMHSERFVQDMVRALQNNAMEKFKQY 219 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R++D LLIDD+QF GK Q EF H N+LL+ +QV+ +DR P E+ +D R++SR Sbjct: 220 YRSVDALLIDDIQFFAGKERTQEEFFHTFNALLEGNQQVILTSDRYPKEINGVDDRLKSR 279 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 G+++ + + E R +ILK + SQ +N+ +EV +A+ + ++ REL+GA Sbjct: 280 FGWGLTLAIEPPELETRVAILKRKAQESQ-----INLADEVAFFIAKRLRSNVRELEGAL 334 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 N+++ +F +T + E L L+ + K + I++IQR VA++Y I DLLS RR Sbjct: 335 NRVIANANFTGRAITIDFVREALRDLLAL-QDKLVTIDNIQRTVAEYYKIKIADLLSKRR 393 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R+V RPRQ+AM LSK +T S PEIG FG RDHTTVLHA RKV+ + E +K++ Sbjct: 394 NRSVARPRQIAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKVKSLREETHDIKEDYS 453 Query: 495 LLKRLIS 501 L R +S Sbjct: 454 NLIRTLS 460 >gi|300853233|ref|YP_003778217.1| putative chromosomal replication initiator protein [Clostridium ljungdahlii DSM 13528] gi|300433348|gb|ADK13115.1| predicted chromosomal replication initiator protein [Clostridium ljungdahlii DSM 13528] Length = 450 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 260/451 (57%), Gaps = 34/451 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + + S+ ++ LSVP + K + ++Y I + S+ ++ L+ S Sbjct: 25 FNTWIKSITPVSIENDTFILSVPNDLTKGILTSKYKNLIANALKLITSKKYNIKFLIAS- 83 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 S ++T L N +K+ +++ + + L+ ++ F +F+ G+SNR Sbjct: 84 --------ESEEALT-LDNTNKRHNKNSVLVNDE-----MSTMLNPKYTFDSFVIGNSNR 129 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE S Y NPLFI+ VGLGKTHL+ AI + + +VVY+++ Sbjct: 130 FAHAASLAVAESPSKAY-----NPLFIYGGVGLGKTHLMHAIGHYILNNNSKSKVVYVSS 184 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F ++I+D+ + ++ RNID+LLIDD+QF+ GK Q EF H N+L ++ KQ Sbjct: 185 EKFTNELINSIKDDKNVEFRNKYRNIDVLLIDDIQFIAGKERTQEEFFHTFNALYEANKQ 244 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + LNI Sbjct: 245 IILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADVEN-----LNIP 299 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVNTGETKKM 409 EV++++A + ++ REL+GA ++V +F+ + EI A E L ++++ ++K++ Sbjct: 300 NEVMVYIATKIKSNIRELEGALIRIV---AFSSLTNKEISIDLAVEALKDIISSKQSKQV 356 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I+ IQ +VA +YN+ +DL S RR R V PRQ+AMYL + +T S P+IG FG RDH Sbjct: 357 TIDLIQDVVANYYNLKVDDLKSARRTRNVAFPRQIAMYLCRKLTDMSLPKIGEEFGGRDH 416 Query: 470 TTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 TTV+HA K+ L+ D +L+ + +L KRL Sbjct: 417 TTVIHAYEKISTNLKQDESLQNAIGDLTKRL 447 >gi|148828164|ref|YP_001292917.1| chromosomal replication initiation protein [Haemophilus influenzae PittGG] gi|148719406|gb|ABR00534.1| chromosomal replication initiation protein [Haemophilus influenzae PittGG] Length = 454 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 158/460 (34%), Positives = 259/460 (56%), Gaps = 22/460 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV ++W + L+ V N + L F+K W++ YL I ++ Q + Sbjct: 13 QLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQIQQICQ---TLA 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFV 163 Q E+ ++L E +P + + +P + S+S + ++ +P+ F S L+++ + Sbjct: 70 QNPEL---RISLK--EGVKPAPKVVENTPNTSLRSESAVDFQTESSTPIKFESHLNTKHL 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A Q +A+ NP F++ GLGKTHLL AI N + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILAD 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF H Sbjct: 181 KPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL + Sbjct: 241 IFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ +N+ EEV +A+ + T+ REL+GA N++ F + + + L ++ Sbjct: 296 KKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDIL 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K +T RS PEIG Sbjct: 356 ALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 RAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|251794037|ref|YP_003008768.1| chromosomal replication initiation protein [Paenibacillus sp. JDR-2] gi|247541663|gb|ACS98681.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. JDR-2] Length = 450 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 153/463 (33%), Positives = 261/463 (56%), Gaps = 28/463 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++ V S ++ ++ + +WF+ K V +++ ++ PT F W++ RY Sbjct: 1 MDSHTYDLWQQVLSIIQTKLSKPSFDTWFKATKASFVNDSLLEVTAPTTFAAEWLEGRY- 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TKL + G ++ VR ++ + +P PI +++PII + Sbjct: 60 ---TKLIRNTLFEFLGRQVDVR-FSIEEAKPAEPAP------PILPKAAEAPIIQEE--- 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F L+ ++ F TF+ G++NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 107 --TFNHMLNPKYTFDTFVIGANNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P+ +++Y+++E F F +AIRDN + ++ RNID+LLIDD+QF Sbjct: 160 HLMHAIGHYIMDHNPSTKIMYISSEKFTNEFINAIRDNRGESFRNKYRNIDVLLIDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ+V ++DR P E+ +L+ R+RSR + G+ + D Sbjct: 220 LAGKDGTQEEFFHTFNALHEERKQIVISSDRTPKEIPTLEERLRSRFEWGLITDIQAPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + ++ E+ L+I E ++++A + T+ REL+GA ++V S + Sbjct: 280 ETRIAILRKK---AKAEN--LDIPNEAMVYIANQIDTNIRELEGALIRVVAYSSLINQDI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T+ +A E L ++ + K + I DIQ+ V + Y + + + +R + V PRQ+AMYL Sbjct: 335 TSHLAAEALKDIIPSSRPKMITINDIQQKVGEFYGLRLEEFKARKRTKAVAYPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 S+ +T S P+IG FG RDHTTV+HA K+ + L+ D L K Sbjct: 395 SRELTDYSLPKIGEAFGGRDHTTVIHAHEKISQQLKQDQDLYK 437 >gi|309973507|gb|ADO96708.1| Chromosomal replication initiator protein [Haemophilus influenzae R2846] Length = 454 Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 259/460 (56%), Gaps = 22/460 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV ++W + L+ V +N + L F+K W++ YL I ++ Q + Sbjct: 13 QLQDQVSASDLSTWLRPLQADVVSNNHIVLYASNMFVKGWVETHYLAQIQQICQ---TLA 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFV 163 Q E+ ++L E +P I + +P T S+S + ++ + V F S L+++ + Sbjct: 70 QNPEL---RISLK--EGVKPAPKIVESTPNTTLRSESAVDFQTESSTSVKFESHLNTKHL 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A Q +A+ NP F++ GLGKTHLL AI N + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILAN 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF H Sbjct: 181 KPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL + Sbjct: 241 IFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ +N+ EEV +A+ + T+ REL+GA N++ F + + + L ++ Sbjct: 296 KKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDIL 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K +T RS PEIG Sbjct: 356 ALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 RAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|145637299|ref|ZP_01792960.1| chromosomal replication initiation protein [Haemophilus influenzae PittHH] gi|145269551|gb|EDK09493.1| chromosomal replication initiation protein [Haemophilus influenzae PittHH] Length = 454 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 161/472 (34%), Positives = 263/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q + Q E+ ++L E +P I + +P T S+S + ++ + Sbjct: 61 IQQICQ---TLAQNPEL---RISLK--EGVKPAPKIVESTPNTTLRSESAVDFQAESSAS 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 VKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|5354184|gb|AAD42393.1|AF157493_1 chromosomal replication initiator protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 484 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 159/485 (32%), Positives = 260/485 (53%), Gaps = 59/485 (12%) Query: 46 LKNQVGPDVYASWFQRL---KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 L+ + G + SW + L F S I+ L+ P+ F+ WI + + + Sbjct: 23 LRKKCGSRTFESWLKSLMLADFDSQ-KKIIRLACPSEFMANWISSHLSDEL--------- 72 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI------------ 150 +L P + + S + P+ ++++ + LG Q Sbjct: 73 ------LLAWRTVWPGIAEVKVSVRNPESQPLLLDVTEIELPLGDQPRPLPKKPAKKKQS 126 Query: 151 ---SPVFGSP-----------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 +P SP + R+ F F+ G +N +A AA + AE + Sbjct: 127 VPATPKSTSPEKKAEGEDQNQFEERYNFDNFVVGKANDLAYRAACTFAEGGKLDF----- 181 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ GLGKTHL+ A+ +KR PN +Y++AE FM+ F +++R + K Sbjct: 182 NPLFLYGGTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKAR 241 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR+ DLL+IDD+QF+ GK Q EF H +N ++ + +++V +ADR P +LE ++ RI SR Sbjct: 242 LRSADLLMIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISADRSPQDLERIESRILSR 301 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L G+ + D+E+R +I+ +L P++++ E+++ +A+ + T+ REL+GA Sbjct: 302 LSWGLVADVNPADFELRLNIILKKLEAM----PQVSMPEDIVFFLAKRICTNVRELEGAL 357 Query: 376 NQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N++V + + PI + E L+ L+ T + + + +EDIQ+ V HY++ D+ S R Sbjct: 358 NRVVAYATLSNRPI-NMDFVTETLADLLRTTQ-QPVTVEDIQKRVCDHYHLKLADMSSKR 415 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R + RPRQVAMYLSK +T RS PEIG+RFG RDHTTV+HA+R++EK+ TD + +V Sbjct: 416 RDRVIARPRQVAMYLSKQLTSRSLPEIGQRFGGRDHTTVIHAIRQIEKLRITDEDVDSDV 475 Query: 494 ELLKR 498 LL R Sbjct: 476 RLLMR 480 >gi|228474142|ref|ZP_04058879.1| chromosomal replication initiator protein DnaA [Staphylococcus hominis SK119] gi|228271837|gb|EEK13174.1| chromosomal replication initiator protein DnaA [Staphylococcus hominis SK119] Length = 450 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 151/472 (31%), Positives = 257/472 (54%), Gaps = 35/472 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ V ++++ + ++ + + + N+ ++ V F W+ + Y + I Sbjct: 4 QEIWKKVLEVAESEISKTTFNTFLKDTELKEIRDNVAYIFVIHEFYADWLNSNYKDVIQT 63 Query: 96 LFQEEHSRIQGVEI---LVRSVALPSVEKTA--SSPSITKLSPINTNISKSPIILGKQTI 150 + ++ I G E+ + L +++T+ S ++ K S I+ + Sbjct: 64 IMKD----IIGYEVDPKFYTAEQLAELDETSRKQSNTVKKTSAIDDSHDDM--------- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 111 -----DQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAQAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + +PN +V+Y ++E F F +IR+N ++ RNID+LLIDD+QF Sbjct: 161 HLMHAIGHHVLSNKPNAKVLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQF 220 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 +Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DY Sbjct: 221 IQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDY 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPIL 388 E R +IL+ ++ E+ L I E L ++A + ++ REL+GA +L+ + + Sbjct: 281 ETRMAILQKKI-----EEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L ++ ++KK+ I+DIQ++V +YN+ D + +R +++ PRQ+AMYL Sbjct: 336 TTELAAEALKDIIQVPKSKKISIQDIQKVVGHYYNVRIEDFSAKKRTKSIAYPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ +T S P+IG FG RDHTTV+HA K+ ++ D K+EVE L++ I Sbjct: 396 SRELTDFSLPKIGEEFGGRDHTTVIHAHEKISNDIKADSIFKQEVEDLEKEI 447 >gi|222053118|ref|YP_002535480.1| chromosomal replication initiator protein DnaA [Geobacter sp. FRC-32] gi|254777903|sp|B9M7S1|DNAA_GEOSF RecName: Full=Chromosomal replication initiator protein DnaA gi|221562407|gb|ACM18379.1| chromosomal replication initiator protein DnaA [Geobacter sp. FRC-32] Length = 445 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 153/476 (32%), Positives = 265/476 (55%), Gaps = 49/476 (10%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL----E 91 E I+ S +K + P Y +W + + FH+V + L VP+ F+K W+ +YL E Sbjct: 2 EKIWLEAQSNIKKVLTPQTYNTWIKPIHFHNVSDTNLTLEVPSKFIKEWVTEKYLSIIIE 61 Query: 92 TITKL----FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 I+ L +Q + + ++ + V L + EK + T+ NTN Sbjct: 62 AISSLTNIKYQVDFKITEKSQVEKKKVDLQATEKIENDS--TRNVDFNTN---------- 109 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 L+ ++ F +F+ G+SN+ A A+Q++A + Y NPLFI+ VGL Sbjct: 110 ----------LNPKYTFDSFVCGASNQFAHAASQAVANNPACNY-----NPLFIYGGVGL 154 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL AI N + ++ Y ++E FM +++R ++ R +D+LLIDD Sbjct: 155 GKTHLLIAIGNQIRENNKKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDILLIDD 214 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + Sbjct: 215 IQFMAGKEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQP 274 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E + +ILK + ++ + + +V + +A + T++ REL+G L+ ++A Sbjct: 275 PDIETKIAILKKKSDLNS-----ITLPNDVALFLASSATSNVRELEG---MLIRLGAYAS 326 Query: 387 ILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + +EI A ++L ++ +TK + +E IQ+ VA H+ I ++L S++R++T V PR Sbjct: 327 LTGSEISLNMARDILKDII-VEKTKDITVEMIQKHVADHFKIKVSELKSDKRLKTFVIPR 385 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Q+A+Y+S+ +T S+PEIG RFG +DH+T++H+V+K+EK +E D+ +K VE +K+ Sbjct: 386 QIAIYISRELTKASYPEIGERFGGKDHSTIIHSVKKIEKQMENDLEIKNTVEKMKK 441 >gi|110803386|ref|YP_697352.1| chromosomal replication initiation protein [Clostridium perfringens SM101] gi|123047633|sp|Q0SWX6|DNAA_CLOPS RecName: Full=Chromosomal replication initiator protein DnaA gi|110683887|gb|ABG87257.1| chromosomal replication initiator protein DnaA [Clostridium perfringens SM101] Length = 457 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 151/457 (33%), Positives = 257/457 (56%), Gaps = 21/457 (4%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K ++ + +W + S+ NI+ LSVP F K + RY + + + + SR Sbjct: 16 IKGEISEISFNTWIKSCTPISISDNILKLSVPNEFTKGILDTRYKDLLIQALKIVTSRKF 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E + S E+ + + NTN I+ +S + L+ ++ F Sbjct: 76 KIEFYLES---DLEEEKENEEKQKEEKKDNTNDVDGSIV-----VSDEMSATLNPKYTFQ 127 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ P Sbjct: 128 SFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILQENP 182 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+++E F +AI+D+ ++ R +D+LLIDD+QF+ GK Q EF H Sbjct: 183 KAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERTQEEFFHTF 242 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +ILK + + Sbjct: 243 NALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETRMAILKKKADVE- 301 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNT 403 L++ EV++++A + ++ REL+GA +++ S ++ ++A E L +++ Sbjct: 302 ----GLSVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASEALKDIISN 357 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 E+ + ++ IQ VA +YN+ DL S RR R + PRQ+AMYLS+ +T S P+IG Sbjct: 358 KESAPVTVKTIQESVANYYNLRIEDLKSQRRTRNIAYPRQIAMYLSRKLTDMSLPKIGEE 417 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 FG RDHTTV+HA K+ + L+TD L+ + ++ K+L Sbjct: 418 FGGRDHTTVIHAYEKISENLKTDEGLQSMINDITKKL 454 >gi|314935201|ref|ZP_07842554.1| ATPase involved in DNA replication initiation [Staphylococcus hominis subsp. hominis C80] gi|313656536|gb|EFS20275.1| ATPase involved in DNA replication initiation [Staphylococcus hominis subsp. hominis C80] Length = 450 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 151/472 (31%), Positives = 257/472 (54%), Gaps = 35/472 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ V ++++ + ++ + + + N+ ++ V F W+ + Y + I Sbjct: 4 QEIWKKVLEVAESEISKTTFNTFLKDTELKEIRDNVAYIFVIHEFYADWLNSNYKDVIQT 63 Query: 96 LFQEEHSRIQGVEI---LVRSVALPSVEKTA--SSPSITKLSPINTNISKSPIILGKQTI 150 + ++ I G E+ + L +++T+ S ++ K S I+ + Sbjct: 64 IIKD----IIGYEVDPKFYTAEQLAELDETSRKQSNTVKKTSAIDDSHDDM--------- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 111 -----DQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAQAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + +PN +V+Y ++E F F +IR+N ++ RNID+LLIDD+QF Sbjct: 161 HLMHAIGHHVLSNKPNAKVLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQF 220 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 +Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DY Sbjct: 221 IQNKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDY 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPIL 388 E R +IL+ ++ E+ L I E L ++A + ++ REL+GA +L+ + + Sbjct: 281 ETRMAILQKKI-----EEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L ++ ++KK+ I+DIQ++V +YN+ D + +R +++ PRQ+AMYL Sbjct: 336 TTELAAEALKDIIQVPKSKKISIQDIQKVVGHYYNVRIEDFSAKKRTKSIAYPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ +T S P+IG FG RDHTTV+HA K+ ++ D K+EVE L++ I Sbjct: 396 SRELTDFSLPKIGEEFGGRDHTTVIHAHEKISNDIKADSIFKQEVEDLEKEI 447 >gi|52840257|ref|YP_094056.1| chromosomal replication initiation protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54292965|ref|YP_125380.1| chromosomal replication initiator protein DnaA [Legionella pneumophila str. Lens] gi|54295984|ref|YP_122353.1| chromosomal replication initiation protein [Legionella pneumophila str. Paris] gi|148358140|ref|YP_001249347.1| chromosomal replication initiator protein DnaA [Legionella pneumophila str. Corby] gi|296105498|ref|YP_003617198.1| chromosomal replication initiator protein DnaA [Legionella pneumophila 2300/99 Alcoy] gi|61212502|sp|Q5X0L8|DNAA_LEGPL RecName: Full=Chromosomal replication initiator protein DnaA gi|61212504|sp|Q5X990|DNAA_LEGPA RecName: Full=Chromosomal replication initiator protein DnaA gi|61212515|sp|Q5ZZK8|DNAA_LEGPH RecName: Full=Chromosomal replication initiator protein DnaA gi|166214678|sp|A5I9F1|DNAA_LEGPC RecName: Full=Chromosomal replication initiator protein DnaA gi|52627368|gb|AAU26109.1| chromosomal replication initiator protein DnaA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53749769|emb|CAH11149.1| Chromosomal replication initiator protein DnaA [Legionella pneumophila str. Paris] gi|53752797|emb|CAH14231.1| Chromosomal replication initiator protein DnaA [Legionella pneumophila str. Lens] gi|148279913|gb|ABQ54001.1| chromosomal replication initiator protein DnaA [Legionella pneumophila str. Corby] gi|295647399|gb|ADG23246.1| chromosomal replication initiator protein DnaA [Legionella pneumophila 2300/99 Alcoy] Length = 452 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 260/460 (56%), Gaps = 25/460 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE-EHSRI 104 L+++ + +W + L+ + ++ L+ P F+ W++ + I +L ++ I Sbjct: 13 LQDEFSAQQFNTWLRPLQAYMDEQRLILLA-PNRFVVDWVRKHFFSRIEELIKQFSGDDI 71 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 + + I V S + +V+ A + I T+ S +P+ + S L+ +FVF Sbjct: 72 KAISIEVGSKPVEAVDTPAET--------IVTSSSTAPLKSAPKKAVDYKSSHLNKKFVF 123 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 +F+EG+SN++A A+ +AE Y NPLFI+ VGLGKTHL+ AI N+ +K Sbjct: 124 DSFVEGNSNQLARAASMQVAERPGDAY-----NPLFIYGGVGLGKTHLMHAIGNSILKNN 178 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P +V+YL +E F+ A++ N K R+++ LLIDD+QF GK Q EF H Sbjct: 179 PEAKVLYLHSERFVADMVKALQTNSINEFKRFYRSLNALLIDDIQFFAGKDRSQEEFFHT 238 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+LL+ +Q++ +DR P E+E ++ R++SR G++V + + E R +IL IS Sbjct: 239 FNALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAIL-----IS 293 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLV 401 + E + + EV +A+ + ++ REL+GA +++ F PI T E E L L+ Sbjct: 294 KAEQSNIELPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPI-TIEFVHEALRDLL 352 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + K + IE+IQ+ VA++Y + DLLS RR R++ RPRQ+AM LSK +T S PEIG Sbjct: 353 AL-QDKLVTIENIQKTVAEYYKVKVADLLSKRRSRSIARPRQMAMALSKELTNHSLPEIG 411 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG +DHTTV+HA RKV+++++ D ++ + L R++S Sbjct: 412 DHFGGKDHTTVIHACRKVKELIQDDSDFAEDYKNLMRILS 451 >gi|304315538|ref|YP_003850683.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777040|gb|ADL67599.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 443 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 153/472 (32%), Positives = 266/472 (56%), Gaps = 40/472 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 +C +++ + +LK+++ Y +W LK ++L NI+ LS F K I RYL I Sbjct: 4 DCYTLWDAIFEKLKSELTSTSYTTWLVHLKPVALLDNILVLSTVNVFTKNIINGRYLNVI 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +S+ ++E S + I + K + Sbjct: 64 YDA--------------AKSITNKNIEIKIVSEDEEEYKKIKETVQ------YKNDKDKI 103 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKTHL+ Sbjct: 104 VSNMLNPKYTFDTFVVGNSNKLAHAACLAVAQSPARAY-----NPLFIYGGVGLGKTHLM 158 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + ++ N +++Y+T+E F ++I+D+ ++ R++D+LLIDD+QF+ Sbjct: 159 HAIGHFVLEHNSNTKIMYVTSETFTNELVNSIKDDKNEEFRNKYRSMDILLIDDIQFIAK 218 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R Sbjct: 219 KERTQEEFFHTFNTLYEANKQIIVSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETR 278 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +ILK + +Q E+ LNI ++VL+++A + ++ REL+GA ++V +F+ + A I Sbjct: 279 IAILKKK---AQNEN--LNIPDDVLIYIAEKIPSNIRELEGALIRIV---AFSSLTKANI 330 Query: 393 ----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A + L ++ + + +K+ ++ IQ V K+YNI D +S +R +T+ PRQ+AMYL Sbjct: 331 DLDLAKDALKDII-SNKVRKITVKLIQEEVCKYYNIKYEDFISKKRTKTIAFPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ MT S P+IG FG +DHTTV+HA K+ ++ D +L K++E LK+ I Sbjct: 390 AREMTDLSLPKIGEEFG-KDHTTVIHAYDKISNDIKEDESLNKQIEELKKRI 440 >gi|83944868|ref|ZP_00957234.1| Chromosomal replication initiator protein DnaA [Oceanicaulis alexandrii HTCC2633] gi|83851650|gb|EAP89505.1| Chromosomal replication initiator protein DnaA [Oceanicaulis alexandrii HTCC2633] Length = 478 Score = 261 bits (666), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 169/466 (36%), Positives = 264/466 (56%), Gaps = 19/466 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ V +RL+ + G VYA+ RL+ V + P F +AW+++ + L Sbjct: 24 TVWRAVRARLREECGDLVYAAEIARLRVELDAAGRVCVICPNEFGRAWVEDNVGVRLRAL 83 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 + Q +I++ EKT SS +S N PV Sbjct: 84 WASVAE--QACDIVI------CTEKTLSSAKSQTVSVAALNAGGVSETAALPPAEPVEAE 135 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + ++RF F TF+ GS+N +A TAA+++A D+ + NP+F H G+GK+HLL A Sbjct: 136 AKREARFTFDTFMVGSANMMAATAARAVASADAPPF-----NPVFFHGDYGVGKSHLLAA 190 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IA+++ +V+YLTAE F+ F SA+R KD +R+ D+LLIDD+ F+ GK Sbjct: 191 IAHSASLSGKRKKVLYLTAEEFLNGFQSALRARDVQPFKDLVRDCDMLLIDDVHFICGKP 250 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 + EF + +L+ + KQVV A+ PS+L D R+R+ L GG + PL D ++R Sbjct: 251 RTEDEFLQTVTALISAEKQVVLASHCAPSQLSVSDDRLRNILAGGFNCPLQGPDLDLRRK 310 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL ++A ++ P L + E V +A VT+S REL+G N ++ R ++ P+ T E Sbjct: 311 ILDCKIAQARNHCPDLEVPETVRDFLAARVTSSARELEGVLNNIIVRTAYMNRPV-TMET 369 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 +E L L E +++ ++DIQ+ VA +++I+ +DL+S RR + VVRPR +AMYL+K M Sbjct: 370 VEEALGELPVKAE-RRITVDDIQKSVASYFSITVDDLISKRRTKAVVRPRHIAMYLAKTM 428 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 T RS P+IGRRFG RDH+TV+HAV K+ + L +D L ++VE L+R Sbjct: 429 TTRSLPDIGRRFGGRDHSTVIHAVNKITETLTSDAVLAEDVEALRR 474 >gi|254496740|ref|ZP_05109599.1| chromosomal replication initiator protein DnaA [Legionella drancourtii LLAP12] gi|254354035|gb|EET12711.1| chromosomal replication initiator protein DnaA [Legionella drancourtii LLAP12] Length = 458 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 159/465 (34%), Positives = 257/465 (55%), Gaps = 29/465 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+++ + +W + L+ H+ +V L+ P F+ W+K + I +L ++ Sbjct: 13 LQDEYSAQQFNTWLRPLQAHTDEQRLVLLA-PNRFVVDWVKKHFFSRIEELIKQ----FS 67 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI---ILGKQTISPVF---GSPLD 159 G EI S+ + S AS T P+ +P +L K S L+ Sbjct: 68 GDEIKSISIEIGS---KASESGSTGTGPVAAGEKSTPAADSMLAKSVPKKAVDYKSSHLN 124 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 +F+F +F+EG+SN++A A+ +AE Y NPLFI+ VGLGKTHL+ AI N Sbjct: 125 KKFLFESFVEGNSNQLARAASMQVAERPGDAY-----NPLFIYGGVGLGKTHLMHAIGNE 179 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 ++ P +++YL +E F+ A++ N K R+++ LLIDD+QF GK Q Sbjct: 180 ILRNNPEAKILYLHSERFVADMVKALQTNSINEFKRFYRSLNALLIDDIQFFAGKDRSQE 239 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+LL+ +Q++ +DR P E+E ++ R++SR G++V + + E R +IL Sbjct: 240 EFFHTFNALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAIL-- 297 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADEL 396 IS+ E + + EV +A+ + ++ REL+GA +++ F PI T E E Sbjct: 298 ---ISKAEQSNIELPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPI-TIEFVHEA 353 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ + K + IE+IQ+ VA++Y + D+LS RR R++ RPRQ+AM LSK +T S Sbjct: 354 LRDLLAL-QDKLVTIENIQKTVAEYYKVKVADILSKRRSRSIARPRQMAMALSKELTNHS 412 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 PEIG FG RDHTTV+HA RKV+++++ D ++ + L R++S Sbjct: 413 LPEIGDHFGGRDHTTVIHACRKVKELVQDDSDFAEDYKNLMRILS 457 >gi|261854631|ref|YP_003261914.1| chromosomal replication initiator protein DnaA [Halothiobacillus neapolitanus c2] gi|261835100|gb|ACX94867.1| chromosomal replication initiator protein DnaA [Halothiobacillus neapolitanus c2] Length = 469 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/347 (40%), Positives = 214/347 (61%), Gaps = 15/347 (4%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F S ++ +F F F+EG SN++A A+Q +A+ GY NPLFI+ VGLGKTHL+ Sbjct: 130 FVSHINKKFNFDNFVEGKSNQLARAASQQVAQNPGVGY-----NPLFIYGGVGLGKTHLM 184 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QA+ NA ++R P+ +VVYL +E ++ + S+I++N KD R+++ LLIDD+QF G Sbjct: 185 QAVGNAILERSPDAKVVYLHSERYVQQMVSSIKNNTIEEFKDFYRSVNALLIDDIQFFAG 244 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L++ +Q++ DR P E+E L+ R++SR G++V + D E R Sbjct: 245 KPRSQEEFFHTFNALIEQGQQIIMTCDRYPKEIEGLEERLKSRFGWGLTVAVEPPDLETR 304 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTA 390 +IL+ S+ E +++++ +V +A+ V + REL+GA +++ F PI T Sbjct: 305 VAILQ-----SKAEQSQISLSTDVAFFIAKRVRANIRELEGALRRVIATAQFTGRPI-TV 358 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E E L + + K + +E+IQR VAK YN+ DL RR R++ RPRQVAM L+K Sbjct: 359 ESTKEALKDQI-AAQAKLITLENIQRTVAKFYNLKLTDLTGARRNRSIARPRQVAMSLAK 417 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +T S PEIG FG RDHTTV+HA +K+E++ E + L + LL+ Sbjct: 418 ELTNHSLPEIGEAFGGRDHTTVIHACKKIEELREIESKLSDDYNLLR 464 >gi|229846051|ref|ZP_04466163.1| chromosomal replication initiation protein [Haemophilus influenzae 7P49H1] gi|229811055|gb|EEP46772.1| chromosomal replication initiation protein [Haemophilus influenzae 7P49H1] Length = 454 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 263/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q + Q E+ ++L E +P I + +P + S+S + ++ + Sbjct: 61 IQQICQ---TLAQNPEL---RISLK--EGVKPAPKIVESTPNTSLRSESAVDFQAESSAS 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 VKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|260581928|ref|ZP_05849724.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae NT127] gi|260095121|gb|EEW79013.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae NT127] Length = 454 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 258/460 (56%), Gaps = 22/460 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV ++W + L+ V N + L F+K W++ YL I ++ Q + Sbjct: 13 QLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQIQQICQ---TLA 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFV 163 Q E+ ++L E +P + + +P + S+S + ++ + V F S L+++ + Sbjct: 70 QNPEL---RISLK--EGVKPAPKVVENTPNTSLRSESAVDFQAESSASVKFESHLNTKHL 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A Q +A+ NP F++ GLGKTHLL AI N + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILAN 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF H Sbjct: 181 KPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL + Sbjct: 241 IFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ LN+ EEV +A+ + T+ REL+GA N++ F + + + L ++ Sbjct: 296 KKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDIL 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K +T RS PEIG Sbjct: 356 ALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 RAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|293391841|ref|ZP_06636175.1| chromosomal replication initiator protein DnaA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952375|gb|EFE02494.1| chromosomal replication initiator protein DnaA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 453 Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 164/467 (35%), Positives = 259/467 (55%), Gaps = 39/467 (8%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH--- 101 +L++++ D + W L+ + N V L F++ W+ + YL IT + ++ Sbjct: 15 QLQDKIPADDFKIWLYPLQ-ADINANGVLLYASNAFVQKWVVDNYLPLITDIARQTSTNP 73 Query: 102 ----SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 S I+G+ + VA P EK A S S + +K+P + S Sbjct: 74 NLNVSVIEGI----KPVA-PKAEKLAKKQSAVGFSE-EKSAAKTP-----------YHSN 116 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+++ VF F+EG SN++A AQ +A D+ G T NPLF++ GLGKTHLL AI Sbjct: 117 LNTKLVFENFVEGKSNQLARAVAQKVA--DNPGEQTA--NPLFLYGGTGLGKTHLLHAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N I PN RVVY+ +E F+ + + IRDN K R++D LL+DD+QF K Sbjct: 173 NGIIANNPNARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKT 232 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H+ N+L + +Q++ +DR P E+E ++ R++SR G++ + D E R +IL Sbjct: 233 QEEFFHIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL 292 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E+ +++ +V + + + T+ REL+GA N++ F PI T + Sbjct: 293 -----MKKAEENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPI-TIDFVR 346 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L ++ + K + +++IQR+VA++Y I +DL S R R+V RPRQVAM L+K +T Sbjct: 347 ETLKDMLAL-QDKLVTVDNIQRVVAEYYRIKVSDLKSKNRSRSVARPRQVAMALAKELTN 405 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RS PEIG+ FGDRDHTTVLHA R + +TD ++++ L R++S Sbjct: 406 RSLPEIGKSFGDRDHTTVLHACRTIAGFRDTDPNIQEDWANLIRILS 452 >gi|16272931|ref|NP_439156.1| chromosomal replication initiation protein [Haemophilus influenzae Rd KW20] gi|260580084|ref|ZP_05847914.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae RdAW] gi|319897495|ref|YP_004135692.1| chromosomal replication initiator protein dnaa, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3031] gi|1169364|sp|P43742|DNAA_HAEIN RecName: Full=Chromosomal replication initiator protein DnaA gi|1574023|gb|AAC22655.1| chromosomal replication initiator protein (dnaA) [Haemophilus influenzae Rd KW20] gi|260093368|gb|EEW77301.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae RdAW] gi|317433001|emb|CBY81372.1| chromosomal replication initiator protein DnaA,DNA-binding transcriptional dual regulator [Haemophilus influenzae F3031] Length = 454 Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 160/472 (33%), Positives = 263/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q + Q E+ ++L E +P I + +P + S+S + ++ + Sbjct: 61 IQQICQ---TLAQNPEL---RISLK--EGVKPAPKIVESTPNTSLRSESAVDFQAESSAS 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 VKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|301154703|emb|CBW14166.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus parainfluenzae T3T1] Length = 455 Score = 260 bits (664), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 160/461 (34%), Positives = 261/461 (56%), Gaps = 21/461 (4%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S+L++QV P ++W + L+ + + V L F+K+W++N YL I ++ Q S+ Sbjct: 12 SQLQDQVSPMDLSTWLRPLQADVISQDQVVLYASNMFVKSWVENHYLAQIHQICQA-LSK 70 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRF 162 ++I+V+ P+ + PS T N +S + +++ +P F S L+ + Sbjct: 71 NPNLQIIVKEGVKPAPKTIEPDPSQT------ANHQESAVSFQQESDAPTKFESHLNRKH 124 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +F F+EG SN++A Q +A + G T NP F++ GLGKTHLL AI N + Sbjct: 125 LFENFVEGKSNQLARAVGQKLAL--APGEPTA--NPFFLYGGTGLGKTHLLHAIGNGILA 180 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF Sbjct: 181 NKPNARVLYIHANNFMQHMVKAMRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFF 240 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL Sbjct: 241 HIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL----- 295 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 + + E+ + + EEV +A+ + T+ REL+GA N++ F + + + L + Sbjct: 296 LKKAEEHHMELPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGHIDIDFVRDTLKDI 355 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + E + + IE+IQ++VA++Y I DL S R R+V RPRQVAM L+K +T +S PEI Sbjct: 356 LALQE-RLVTIENIQKVVAEYYRIKVADLKSKSRARSVTRPRQVAMALAKELTNKSLPEI 414 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 GR F +RDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 GRAF-ERDHTTVLNACREVPKFREKDSSIQEDWANLIRTLS 454 >gi|319775073|ref|YP_004137561.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3047] gi|317449664|emb|CBY85870.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3047] Length = 454 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 264/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q + Q E+ ++L E +P + + +P +T ++S + ++ + Sbjct: 61 IQQICQ---TLAQNPEL---RISLK--EGVKPAPKVVENAPSDTPKTESAVDFQAESSAS 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 VKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|330447269|ref|ZP_08310919.1| chromosomal replication initiator protein DnaA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491460|dbj|GAA05416.1| chromosomal replication initiator protein DnaA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 450 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 157/460 (34%), Positives = 254/460 (55%), Gaps = 28/460 (6%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE---EHSRIQGVEILVRSV 114 W + L+ H + L P F+ W++++YL I +L E + I E+ + V Sbjct: 2 WVRPLQAELNDHTLT-LFAPNRFVLDWVRDKYLNNINRLLNEFCGSDAPILRFEVGSKPV 60 Query: 115 ALPSVEKTASSPSITKLSPINT---NISKSPIILGKQTISPV--------FGSPLDSRFV 163 P + A +P++T + T + +S + SPV + S ++ + Sbjct: 61 TAPPPSQPAVAPTLTPAPAVETVESRLEQSAPTSYEPAPSPVQPEAQQGGYRSNVNPKHN 120 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F+ F+EG SN++ L A + +A+ Y NPLF++ GLGKTHLL A+ NA R Sbjct: 121 FNNFVEGKSNQLGLAACRQVADNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIANR 175 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H Sbjct: 176 KPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 235 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + Sbjct: 236 TFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----M 290 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + ED + + +EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 291 KKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLL 350 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+AM L+K +T S PEIG Sbjct: 351 ALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALAKELTNHSLPEIG 409 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 DAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 449 >gi|326423789|ref|NP_759961.2| chromosomal replication initiator protein DnaA [Vibrio vulnificus CMCP6] gi|31340045|sp|Q8DDI9|DNAA_VIBVU RecName: Full=Chromosomal replication initiator protein DnaA gi|319999154|gb|AAO09488.2| chromosomal replication initiator protein DnaA [Vibrio vulnificus CMCP6] Length = 468 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 163/477 (34%), Positives = 268/477 (56%), Gaps = 25/477 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL +I +L Sbjct: 4 SLWLQCMQRLQEELPATEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNSINRL 62 Query: 97 FQEEHSR-IQGV--EILVRSVALPSVEKTASSPSITKLSPINTNI-SKSPIIL----GKQ 148 QE I + E+ R VA P T + + S + ++ P+ Q Sbjct: 63 LQEYCGHDIPNLRFEVGSRPVAAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDDAQ 122 Query: 149 TISPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 I+ + S ++ + F+ F+EG SN++ L AA+ +A+ Y NPLF++ GL Sbjct: 123 AIADINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAY-----NPLFLYGGTGL 177 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 178 GKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 237 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEP 297 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA- 385 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 PELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTG 352 Query: 386 -PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 PI T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+ Sbjct: 353 RPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQL 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|145632379|ref|ZP_01788114.1| chromosomal replication initiation protein [Haemophilus influenzae 3655] gi|144987286|gb|EDJ93816.1| chromosomal replication initiation protein [Haemophilus influenzae 3655] Length = 454 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 258/460 (56%), Gaps = 22/460 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV ++W + L+ V N + L F+K W++ YL I ++ Q + Sbjct: 13 QLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQIQQICQ---TLA 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFV 163 Q E+ ++L E +P I + +P + S+S + ++ + V F S L+++ + Sbjct: 70 QNPEL---RISLK--EGVKPAPKIVESTPNTSLRSESAVDFQAESSASVKFESHLNTKHL 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A Q +A+ NP F++ GLGKTHLL AI N + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILAD 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF H Sbjct: 181 KPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL + Sbjct: 241 IFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ +N+ EEV +A+ + T+ REL+GA N++ F + + + L ++ Sbjct: 296 KKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDIL 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K +T RS PEIG Sbjct: 356 ALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 RAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|310639472|ref|YP_003944230.1| atpase involved in DNA replication initiation-like protein [Paenibacillus polymyxa SC2] gi|309244422|gb|ADO53989.1| ATPase involved in DNA replication initiation-like protein [Paenibacillus polymyxa SC2] Length = 448 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 158/459 (34%), Positives = 252/459 (54%), Gaps = 34/459 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + I +I+ ++L Y +WF+ K + + + +S PT F W+++RY T Sbjct: 9 WQQILSIIQTKLSKPS----YDTWFKATKAAKLNDHSIVISAPTTFAVEWLESRY----T 60 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 KL I G + V+ V I + P ++ + P V Sbjct: 61 KLVGATVYEILGKHLEVKFV-------------IEENKPAEVDLQQQPQQQPVVQEEAV- 106 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ VGLGKTHL+ Sbjct: 107 SHMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKTHLMH 161 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ P +VVYL++E F F +AIRDN + ++ RNID+LLIDD+QF+ GK Sbjct: 162 AIGHYILEHNPTSKVVYLSSEKFTNEFINAIRDNRGESFRNKYRNIDILLIDDIQFIAGK 221 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 ESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRI 281 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL+ + ++ E+ L+I E +M++A + T+ REL+GA ++V S +++ + Sbjct: 282 AILRKK---ARAEN--LDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDVSSHL 336 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L ++ + K + I+DIQ V + YN+ D + +R + V PRQ+AMYLS+ + Sbjct: 337 AAEALKDIIPSSRPKMITIQDIQHQVGEFYNLRLEDFKARKRTKAVAFPRQIAMYLSREL 396 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 T S P+IG FG RDHTTV+HA K+ K ++ D L K Sbjct: 397 TDYSLPKIGEAFGGRDHTTVIHAHEKISKSIQVDQDLFK 435 >gi|307249123|ref|ZP_07531130.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854411|gb|EFM86607.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 451 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 262/467 (56%), Gaps = 25/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I L Sbjct: 7 SLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKFLAEIVDL 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + + +R V + E + SPS T +N SK Q + F + Sbjct: 66 ARF-LSKNDNLAVSIR-VGIKPAEHKSVSPSTT------SNNSKEEA----QESNKNFRT 113 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F++G SN++A AQ +A D+ G + NP ++ GLGKTHLL A+ Sbjct: 114 GLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGKTHLLHAV 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 170 GNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEA 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R +I Sbjct: 230 SQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAI 289 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 290 L-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAVR 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 345 EALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSLAKELTN 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 404 HSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 450 >gi|303251822|ref|ZP_07337993.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649252|gb|EFL79437.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 447 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 262/467 (56%), Gaps = 25/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I L Sbjct: 3 SLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKFLAEIVDL 61 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + + +R V + E + SPS T +N SK Q + F + Sbjct: 62 ARF-LSKNDNLAVSIR-VGIKPAEHKSVSPSTT------SNNSKEEA----QESNKNFRT 109 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F++G SN++A AQ +A D+ G + NP ++ GLGKTHLL A+ Sbjct: 110 GLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGKTHLLHAV 165 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 166 GNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEA 225 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R +I Sbjct: 226 SQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAI 285 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 286 L-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAVR 340 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 341 EALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSLAKELTN 399 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 400 HSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 446 >gi|145640667|ref|ZP_01796250.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] gi|145274593|gb|EDK14456.1| chromosomal replication initiation protein [Haemophilus influenzae 22.4-21] Length = 454 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 160/460 (34%), Positives = 258/460 (56%), Gaps = 22/460 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV ++W + L+ V N + L F+K W++ YL I ++ Q + Sbjct: 13 QLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVEIHYLAQIQQICQ---TLA 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFV 163 Q E+ ++L E +P I + +P + S+S + ++ + V F S L+++ + Sbjct: 70 QNPEL---RISLK--EGVKPAPKIVESTPNTSLRSESAVDFQAESSASVKFESHLNTKHL 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A Q +A+ NP F++ GLGKTHLL AI N + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILAN 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF H Sbjct: 181 KPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL + Sbjct: 241 IFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ LN+ EEV +A+ + T+ REL+GA N++ F + + + L ++ Sbjct: 296 KKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDIL 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K +T RS PEIG Sbjct: 356 ALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 RAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|20806543|ref|NP_621714.1| chromosomal replication initiation protein [Thermoanaerobacter tengcongensis MB4] gi|38257678|sp|Q8RDL6|DNAA_THETN RecName: Full=Chromosomal replication initiator protein DnaA gi|20514980|gb|AAM23318.1| ATPase involved in DNA replication initiation [Thermoanaerobacter tengcongensis MB4] Length = 443 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 260/459 (56%), Gaps = 38/459 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ P Y +W +K + + + LS P F K I RY+ I + S++ Sbjct: 16 IKSELTPTSYNTWLVHIKPLAFAEDTLFLSTPNTFTKNIINGRYINII----YDAASKVT 71 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 I ++ ++ E SI + N S+S ++ S L+ ++ F Sbjct: 72 NRFIEIKILSEDEEEYREIKESIER-----ENSSESTLL-----------STLNPKYTFD 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKTHL+ AI + K Sbjct: 116 TFVVGNSNKLAHAACLAVAQSPAKAY-----NPLFIYGGVGLGKTHLMHAIGHFINKNHA 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF+ K Q EF H Sbjct: 171 GYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIANKERTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DYE R +ILK + +Q Sbjct: 231 NTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRVAILKKK---AQ 287 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN-- 402 E+ LNI +EVL +VA + ++ REL+GA ++V +FA + + I EL H + Sbjct: 288 SEN--LNIPDEVLAYVAEKIQSNIRELEGALIRIV---AFATLTKSNIDLELTKHALKDI 342 Query: 403 -TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + +T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL++ +T S P+IG Sbjct: 343 VSNKTREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYLARELTDLSLPKIG 402 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG +DHTTV+HA K+ ++ D +L +++E LK+ I Sbjct: 403 EEFG-KDHTTVIHAYEKISNEIKQDESLARQIEELKKRI 440 >gi|229843947|ref|ZP_04464088.1| chromosomal replication initiation protein [Haemophilus influenzae 6P18H1] gi|229812941|gb|EEP48629.1| chromosomal replication initiation protein [Haemophilus influenzae 6P18H1] Length = 454 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 258/460 (56%), Gaps = 22/460 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV ++W + L+ V N + L F+K W++ YL I ++ Q + Sbjct: 13 QLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQIQQICQ---TLA 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFV 163 Q E+ ++L E +P I + +P + S+S + ++ + V F S L+++ + Sbjct: 70 QNPEL---RISLK--EGVKPAPKIVESTPNTSLRSESAVDFQAESSASVKFESHLNTKHL 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A Q +A+ NP F++ GLGKTHLL AI N + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILAN 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF H Sbjct: 181 KPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL + Sbjct: 241 IFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ LN+ EEV +A+ + T+ REL+GA N++ F + + + L ++ Sbjct: 296 KKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDIL 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K +T RS PEIG Sbjct: 356 ALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 RAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|323705848|ref|ZP_08117420.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534844|gb|EGB24623.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium xylanolyticum LX-11] Length = 443 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 154/472 (32%), Positives = 270/472 (57%), Gaps = 40/472 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 +C S++ + +LK+++ Y +W LK ++L +I+ LS F K I RYL I Sbjct: 4 DCYSLWDAIFEKLKSELTTTSYTTWLVHLKPVALLDDILVLSAVNVFTKNIINGRYLNVI 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + I +I ++ V+ E ++ S + +S Sbjct: 64 ----YDAAKSITNKKIEIKIVSEDEEEYKKIKETVQFKSEKDKTVS-------------- 105 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKTHL+ Sbjct: 106 --NMLNPKYTFDTFVVGNSNKLAHAACLAVAQSPARAY-----NPLFIYGGVGLGKTHLM 158 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + ++ N +++Y+T+E F ++I+D+ ++ R++D+LLIDD+QF+ Sbjct: 159 HAIGHFVLEHNSNTKIMYVTSETFTNELVNSIKDDKNEEFRNKYRSMDILLIDDIQFIAK 218 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R Sbjct: 219 KERTQEEFFHTFNTLYEANKQIIVSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDFETR 278 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +ILK + +Q E+ LNI ++VL+++A + ++ REL+GA ++V +F+ + A I Sbjct: 279 IAILKKK---AQNEN--LNIPDDVLVYIAEKIPSNIRELEGALIRIV---AFSSLTKANI 330 Query: 393 ----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A + L ++ + + +K+ ++ IQ V K+YNI+ D +S +R +T+ PRQ+AMYL Sbjct: 331 DLDLAKDALKDII-SNKVRKITVKLIQEEVCKYYNINYEDFISKKRTKTIAFPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ MT S P+IG FG +DHTTV+HA K+ ++ D +L K++E LK+ I Sbjct: 390 AREMTDLSLPKIGEEFG-KDHTTVIHAYDKISNDIKEDESLNKQIEELKKRI 440 >gi|261868623|ref|YP_003256545.1| chromosomal replication initiation protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413955|gb|ACX83326.1| chromosomal replication initiator protein DnaA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 453 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 162/467 (34%), Positives = 259/467 (55%), Gaps = 39/467 (8%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH--- 101 +L++++ D + W L+ + N V L F++ W+ + YL IT + ++ Sbjct: 15 QLQDKIPADDFKIWLYPLQ-ADINANGVLLYASNAFVQKWVVDNYLPLITDIARQTSTNP 73 Query: 102 ----SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 S I+G++ A P EK A S S ++ +K+P + S Sbjct: 74 NLNVSVIEGIK-----PAAPKAEKPAKKQSAVGFSEEKSS-AKTP-----------YHSN 116 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+++ VF F+EG SN++A AQ +A D+ G T NPLF++ GLGKTHLL AI Sbjct: 117 LNTKLVFENFVEGKSNQLARAVAQKVA--DNPGEQTA--NPLFLYGGTGLGKTHLLHAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N I PN RVVY+ +E F+ + + IRDN K R++D LL+DD+QF K Sbjct: 173 NGIIANNPNARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKT 232 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H+ N+L + +Q++ +DR P E+E ++ R++SR G++ + D E R +IL Sbjct: 233 QEEFFHIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL 292 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E+ +++ +V + + + T+ REL+GA N++ F PI T + Sbjct: 293 -----MKKAEENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPI-TIDFVR 346 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L ++ + K + +++IQ++VA++Y I +DL S R R+V RPRQVAM L+K +T Sbjct: 347 ETLKDMLAL-QDKLVTVDNIQKVVAEYYRIKVSDLKSKNRSRSVARPRQVAMALAKELTN 405 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RS PEIG+ FGDRDHTTVLHA R + +TD ++++ L R++S Sbjct: 406 RSLPEIGKSFGDRDHTTVLHACRTIAGFRDTDPNIQEDWANLIRILS 452 >gi|312142409|ref|YP_003993855.1| chromosomal replication initiator protein DnaA [Halanaerobium sp. 'sapolanicus'] gi|311903060|gb|ADQ13501.1| chromosomal replication initiator protein DnaA [Halanaerobium sp. 'sapolanicus'] Length = 473 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 154/466 (33%), Positives = 263/466 (56%), Gaps = 23/466 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVL---HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 ++K ++ + +WF K +VL N + L VP NF++ WI+ +Y+ I + + Sbjct: 18 KIKEKITNPSFNTWFSETK--AVLTTKENQLVLQVPNNFIQEWIETQYINLIEDILNDLT 75 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNI---SKSPIILGKQTISPVFGSPL 158 + +L EK A + + + NT++ + LG+Q + Sbjct: 76 GNEWSLLLLTPKEVKKFKEKQAENKKVHSKNN-NTDLMDETDDFDDLGEQEDEEKLNNGF 134 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + ++ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+QAIA+ Sbjct: 135 NPKYTFDTFVVGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGDVGLGKTHLMQAIAH 189 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 +K P+ +VVY+++E F ++I+D+ ++ +D RNID+LL+DD+QFL GK Q Sbjct: 190 FILKNNPDYKVVYVSSETFTNELINSIKDDSTVDFRDKYRNIDILLVDDIQFLAGKERTQ 249 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L +S +Q++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ Sbjct: 250 EEFFHTFNTLHESNRQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRIAILR 309 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADEL 396 + I L I EV++++A + ++ REL+GA +++ S + E+A E Sbjct: 310 KKADIEN-----LTIPNEVVIYIANKIQSNIRELEGALVKVIAYSSLVDREIDIELAREA 364 Query: 397 LSHLVNTGETKKMRIE--DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L LVN + + + + I++++ + YN+ D+ S +R + + PRQ+AMYLS+ +T Sbjct: 365 LKDLVNKKKDEHIEVNIERIKKIIIEDYNLRMEDMESKKRTQNIAFPRQIAMYLSRELTD 424 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+HA K+++ ++ + K++E L I Sbjct: 425 FSLPHIGDEFGGRDHTTVIHAHNKIKEKIKNEEDFSKKIERLTNTI 470 >gi|285016822|ref|YP_003374533.1| chromosomal replication initiator protein DnaA [Xanthomonas albilineans GPE PC73] gi|283472040|emb|CBA14547.1| probable chromosomal replication initiator protein dnaa [Xanthomonas albilineans] Length = 445 Score = 259 bits (663), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 169/484 (34%), Positives = 259/484 (53%), Gaps = 44/484 (9%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + + +W + L+ N + L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPAEDVHTWLKPLQAEQRHDNSMVLYAPNAFIVE 48 Query: 84 WIKNRYLETITKLFQEEHSRIQGVE-ILVRSVALPSVEK--TASSPSITKLSPINTNISK 140 + RYL I +L + G E +L++ + P + A+S S T +P Sbjct: 49 QVHARYLSRIRELL----NYFAGSEDVLLQVGSRPRAPEPMAAASDSTTARTP------- 97 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 SP Q + P G+ LDS + F+ F+EG SN++ L AA A+ NPL Sbjct: 98 SP-----QLLEPFAGN-LDSHYTFANFVEGRSNQLGLAAAVQAAQKPGDRAH----NPLL 147 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ S GLGKTHL+ A NA ++ PN RV+YL +E F A+++ K + + Sbjct: 148 LYGSTGLGKTHLMFAAGNAMREQNPNARVMYLRSEQFFSAMIRALQEKTMDQFKRQFQQV 207 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G Sbjct: 208 DALLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWG 267 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 +SV + D+E R +I+ +++ + I +EV +A+ + ++ R+L+GA N L Sbjct: 268 LSVAIDPPDFETRAAIV-----LAKARERGAEIPDEVAFLIAKKMRSNVRDLEGALNTLA 322 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 R +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ Sbjct: 323 ARANFTGRAITTEFAQETLRDLLR-AQQQAIGIPNIQKTVADYYGLQIKDLLSKRRTRSL 381 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM L+K +T S PEIG F RDHTTVLHA R+++ ++ETD L+++ + L R Sbjct: 382 ARPRQMAMALTKELTEHSLPEIGDAFAGRDHTTVLHACRQIKHLMETDGKLREDWDKLIR 441 Query: 499 LISE 502 +SE Sbjct: 442 KLSE 445 >gi|329123016|ref|ZP_08251587.1| DNA-directed DNA replication initiator protein [Haemophilus aegyptius ATCC 11116] gi|327471947|gb|EGF17387.1| DNA-directed DNA replication initiator protein [Haemophilus aegyptius ATCC 11116] Length = 454 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 264/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q + Q E+ ++L E +P + + +P +T ++S + ++ + Sbjct: 61 IQQICQ---TLAQNPEL---RISLK--EGVKPAPKVVENAPSDTPKTESAVDFQAESSAS 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 VKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILADKPNARVLYIHANNFMQHMIKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|167461551|ref|ZP_02326640.1| chromosomal replication initiation protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 452 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 258/463 (55%), Gaps = 26/463 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++ V S ++ ++ + +W + + V + P NF K W+++RY Sbjct: 1 MESHNPDLWQQVLSIIQTKLSKPSFDTWLKSTRATVFTDTYVVICAPNNFAKEWLESRYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I+ E + ++ +V S E+ +P + + P +I K P + ++ Sbjct: 61 KMISSTIYEFLGKQVEIKFIVES------EEDQVNP-VPEAVP---DIPKGPALGQEENY 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S + ++SR+ F TF+ G NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 111 SNM----MNSRYTFDTFVIGQGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P RV+Y+++E F F +A+RDN + ++ R ID+LLIDD+QF Sbjct: 162 HLMHAIGHYVLEHNPEARVLYISSEKFTNEFINAVRDNRGEDFRNKYRTIDVLLIDDIQF 221 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 222 ISGKEGTQEEFFHTFNALHEEGKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDL 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + ++ E+ L I E ++++A + T+ REL+GA ++V S + Sbjct: 282 ETRIAILRKK---AKAEN--LEIPNEAMLYIANQIDTNIRELEGALIRVVAYSSLINQDI 336 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E L ++ + + + I+DIQ+ V + Y + D + +R + V PRQVAMYL Sbjct: 337 TTHLAAEALKDIIPSSRPRVITIQDIQQKVGEFYGLKLEDFKARKRTKAVAFPRQVAMYL 396 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 S+ +T S P+IG FG RDHTTV+HA K+ + ++ D L K Sbjct: 397 SRELTDFSLPKIGDAFGGRDHTTVIHAHEKISEAVKKDQELYK 439 >gi|254478926|ref|ZP_05092288.1| chromosomal replication initiator protein DnaA [Carboxydibrachium pacificum DSM 12653] gi|214035148|gb|EEB75860.1| chromosomal replication initiator protein DnaA [Carboxydibrachium pacificum DSM 12653] Length = 462 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 260/459 (56%), Gaps = 38/459 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ P Y +W +K + + + LS P F K I RY+ I + S++ Sbjct: 35 IKSELTPTSYNTWLVHIKPLAFAEDTLFLSTPNTFTKNIINGRYINII----YDAASKVT 90 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 I ++ ++ E SI + N S+S ++ S L+ ++ F Sbjct: 91 NRFIEIKILSEDEEEYREIKESIER-----ENSSESTLL-----------STLNPKYTFD 134 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKTHL+ AI + K Sbjct: 135 TFVVGNSNKLAHAACLAVAQSPAKAY-----NPLFIYGGVGLGKTHLMHAIGHFINKNHA 189 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF+ K Q EF H Sbjct: 190 GYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQFIANKERTQEEFFHTF 249 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DYE R +ILK + +Q Sbjct: 250 NTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDYETRVAILKKK---AQ 306 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN-- 402 E+ LNI +EVL +VA + ++ REL+GA ++V +FA + + I EL H + Sbjct: 307 SEN--LNIPDEVLAYVAEKIQSNIRELEGALIRIV---AFATLTKSNIDLELTKHALKDI 361 Query: 403 -TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + +T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL++ +T S P+IG Sbjct: 362 VSNKTREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYLARELTDLSLPKIG 421 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG +DHTTV+HA K+ ++ D +L +++E LK+ I Sbjct: 422 EEFG-KDHTTVIHAYEKISNEIKQDESLARQIEELKKRI 459 >gi|168334923|ref|ZP_02693043.1| DnaA [Epulopiscium sp. 'N.t. morphotype B'] Length = 445 Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 152/435 (34%), Positives = 252/435 (57%), Gaps = 32/435 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +WF++ K ++ + + ++V + K+ + RY + I R V +L + Sbjct: 23 FNTWFKQTKLSNISDDTLTITVKDDLSKSILSTRYFDLI---------RTSAVTVLDKKY 73 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 L + K ++ SITK I+ + I + +P S L+ ++ F++F+ G+SNR Sbjct: 74 NLEFIIKESNPLSITK-------IATNRIAIQDPLNAP---SNLNPKYTFNSFVVGNSNR 123 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A A ++A++ + Y NPLF++ VGLGKTHL+Q+IA+ ++K PNL+V+Y + Sbjct: 124 MAHAATMAVAKMPAKSY-----NPLFLYGGVGLGKTHLMQSIAHFTLKHHPNLKVLYTST 178 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F ++IRD+ ++ RNID+LLIDD+QF+ GK Q EF H N+L ++ KQ Sbjct: 179 EKFTNELINSIRDDQNNAFRNKYRNIDILLIDDIQFIAGKERTQEEFFHTFNTLYEANKQ 238 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DR P E+E L+ R+RSR + G+ L D E R +ILK + E + I+ Sbjct: 239 IIISSDRTPKEIEFLESRLRSRFEWGLIADLQPPDLETRIAILKKK-----AEMENITID 293 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIE 412 VL +A T+ ++ REL+GA N+++ S + + E+ +E L + + E+ + Sbjct: 294 SNVLQFIAETIISNIRELEGALNRIIAFSSLSNETINLELTEEALKDTILSKESISIITP 353 Query: 413 D-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 IQ +VA YNI+ ++LLS++RVRT+ RPRQ+AMYL + +T S +I +FG RDHTT Sbjct: 354 SYIQSIVAMTYNITISELLSSKRVRTISRPRQIAMYLCRKLTNLSLTKIAEQFGGRDHTT 413 Query: 472 VLHAVRKVEKMLETD 486 +LH K+ K L D Sbjct: 414 ILHGYDKIAKELVED 428 >gi|226942171|ref|YP_002797244.1| chromosomal replication initiation protein [Azotobacter vinelandii DJ] gi|259645245|sp|C1DFU2|DNAA_AZOVD RecName: Full=Chromosomal replication initiator protein DnaA gi|226717098|gb|ACO76269.1| Bacterial chromosomal replication initiator protein DnaA [Azotobacter vinelandii DJ] Length = 478 Score = 259 bits (662), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 163/478 (34%), Positives = 264/478 (55%), Gaps = 35/478 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L++++ + +W + L+ + + + + P F+ W+ +YL + +L E + Sbjct: 13 LRDELPAQQFNTWIRPLQVEAD-GDELRVYAPNRFVLDWVNEKYLGRLLELLGERSEDVT 71 Query: 106 -GVEILV---RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-------- 153 V +L+ RS A +V+ + P++ + +P+ + + + Q ++P Sbjct: 72 PSVSLLIGSKRSSAPRAVQPASPPPAVVQAAPVAIEEASAARTVDAQPVAPATVRTERSV 131 Query: 154 -------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VG Sbjct: 132 QVEGGLKHTSYLNRAFTFENFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVG 186 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ A+ N +K+ PN +VVYL +E F+ A++ N K R++D LLID Sbjct: 187 LGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLID 246 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + Sbjct: 247 DIQFFAKKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVE 306 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 + E R +IL + + E K+ + + +A+ + ++ REL+GA +++ F Sbjct: 307 PPELETRVAIL-----MKKAEQTKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFT 361 Query: 386 --PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 PI T E+ E L L+ + K + I++IQR VA++Y I DLLS RR R+V RPRQ Sbjct: 362 NHPI-TIELIRESLKDLLAL-QDKLVSIDNIQRTVAEYYKIKIADLLSKRRSRSVARPRQ 419 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAM LSK +T S PEIG FG RDHTTVLHA RK+ ++ ETD ++++ + L R ++ Sbjct: 420 VAMALSKELTNHSLPEIGDSFGGRDHTTVLHACRKIAELRETDADIREDYKNLLRTLT 477 >gi|145630089|ref|ZP_01785871.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] gi|144984370|gb|EDJ91793.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] Length = 439 Score = 259 bits (661), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 156/453 (34%), Positives = 255/453 (56%), Gaps = 22/453 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V +N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVSNNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q + Q E+ ++L E +P I + +P T S+S + ++ +P Sbjct: 61 IQQICQ---TLAQNPEL---RISLK--EGVKPAPKIVESTPNTTLRSESAVDFQTESSTP 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 IKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 K +T RS PEIGR F DRDHTTVL+A R+V K+ Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKI 434 >gi|145638185|ref|ZP_01793795.1| chromosomal replication initiation protein [Haemophilus influenzae PittII] gi|145272514|gb|EDK12421.1| chromosomal replication initiation protein [Haemophilus influenzae PittII] Length = 454 Score = 259 bits (661), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 158/460 (34%), Positives = 258/460 (56%), Gaps = 22/460 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++QV ++W + L+ V N + L F+K W++ YL I ++ Q + Sbjct: 13 QLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQIQQICQ---TLA 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFV 163 Q E+ ++L E +P + + +P + S+S + ++ + V F S L+++ + Sbjct: 70 QNPEL---RISLK--EGVKPAPKVVENTPNTSLRSESAVDFQAESSASVKFESHLNTKHL 124 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+EG SN++A Q +A+ NP F++ GLGKTHLL AI N + Sbjct: 125 FDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILAN 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q EF H Sbjct: 181 KPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL + Sbjct: 241 IFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLV 401 + E+ LN+ EEV +A+ + T+ REL+GA N++ F + + + L ++ Sbjct: 296 KKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDIL 355 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K +T RS PEIG Sbjct: 356 ALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAKELTNRSLPEIG 414 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 415 RAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|312897428|ref|ZP_07756852.1| replication initiator protein DnaA [Megasphaera micronuciformis F0359] gi|310621489|gb|EFQ05025.1| replication initiator protein DnaA [Megasphaera micronuciformis F0359] Length = 513 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 171/500 (34%), Positives = 259/500 (51%), Gaps = 59/500 (11%) Query: 45 RLKNQVGPDVYASWFQ-RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +LK + P +Y +W + L +S+ +N L TNF+ ++I +Y T L + S Sbjct: 24 KLKQSLPPQIYNTWIETSLIPYSLENNTFTLDTTTNFICSYITKKY----THLLETTASS 79 Query: 104 IQGVEILVRSV--------------------------------ALPSVEKTASSPSITKL 131 + EI VR + +L + E T S P T+ Sbjct: 80 VADQEIKVRLIHSAGDLSDMGQSNTQKKEESQDIYANNVYTIESLKTHETTESVPPHTEQ 139 Query: 132 SPINTNISKSPIILG-------KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 + + +P I K I S L+ + F TF+ G+SNR+A AA SIA Sbjct: 140 VQTGSEPTYTPDIKQSGPFSDEKDDILQTGASTLNDAYTFDTFVVGNSNRLAHAAAMSIA 199 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 E Y+ P FI+ GLGKTHL+ AI + +K P+LR+ +T+E F + Sbjct: 200 ESPMTKYS-----PFFIYGDSGLGKTHLMHAIGHYILKHYPHLRLRCITSEDFANELIQS 254 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 I+D + + RNID+LL+DD+QFL+ K Q EF H N L KQ+V +DRPP Sbjct: 255 IQDKNPESFRQRYRNIDVLLVDDIQFLESKEHTQEEFFHTFNKLYKDHKQMVFTSDRPPQ 314 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 ++ L+ R+RSR QGG V + D E R +IL+NR I L I++E + ++A Sbjct: 315 NIKKLEDRLRSRFQGGTVVNIDPPDLETRTAILRNRAKIEH-----LPIDKEAIDYIASN 369 Query: 364 VTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKK-MRIEDIQRMVAK 420 V+ + REL+GAF + + S +PI T E+ L LV T + KK + I++I + V Sbjct: 370 VSENIRELEGAFIRAQMQASVENSPI-TLEVTQRALQELVKTKQEKKYITIDEITKHVCS 428 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 +Y I DL+S +++ + PRQ+AMYL + +T ++P IG F DRDHTTV++AV K+ Sbjct: 429 YYKIKYEDLMSKTKLKKIAFPRQIAMYLCRELTEHTYPHIGVAFNDRDHTTVIYAVNKIS 488 Query: 481 KMLETDITLKKEVELLKRLI 500 K ++ D +L+K VE +K I Sbjct: 489 KEIKKDESLRKAVEQIKNSI 508 >gi|114561189|ref|YP_748702.1| chromosomal replication initiation protein [Shewanella frigidimarina NCIMB 400] gi|122301225|sp|Q08A51|DNAA_SHEFN RecName: Full=Chromosomal replication initiator protein DnaA gi|114332482|gb|ABI69864.1| chromosomal replication initiator protein DnaA [Shewanella frigidimarina NCIMB 400] Length = 461 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 160/479 (33%), Positives = 258/479 (53%), Gaps = 36/479 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT-----------NISKSPIIL 145 F E+ ++ + PS A +P K P+N N PII Sbjct: 63 FTEQMGS-NAPKLRFDIGSRPSARPVAPAPVAAK--PVNRQTKAQVGTTSFNTQAEPII- 118 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 +P S ++ + F F+EG SN++ AA ++E Y NPLF++ Sbjct: 119 -----NPNHRSNINPTYQFDNFVEGKSNQLGKAAALQVSENPGGAY-----NPLFLYGGT 168 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N IK PN +VVY+ +E F+ A+++N K R++D L I Sbjct: 169 GLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFI 228 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + Sbjct: 229 DDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAI 288 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 289 EPPELETRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANF 343 Query: 385 A--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 PI T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPR Sbjct: 344 TGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPR 401 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM LSK +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 402 QVAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 460 >gi|37678195|ref|NP_932804.1| chromosomal replication initiation protein [Vibrio vulnificus YJ016] gi|61212682|sp|Q7MQJ7|DNAA_VIBVY RecName: Full=Chromosomal replication initiator protein DnaA gi|37196934|dbj|BAC92775.1| chromosomal DNA replication initiator DnaA [Vibrio vulnificus YJ016] Length = 468 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 268/477 (56%), Gaps = 25/477 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL +I +L Sbjct: 4 SLWLQCMQRLQEELPATEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNSINRL 62 Query: 97 FQEEHSR-IQGV--EILVRSVALPSVEKTASSPSITKLSPINTNI-SKSPIIL----GKQ 148 QE I + E+ R +A P T + + S + ++ P+ Q Sbjct: 63 LQEYCGHDIPNLRFEVGSRPMAAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDDAQ 122 Query: 149 TISPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 I+ + S ++ + F+ F+EG SN++ L AA+ +A+ Y NPLF++ GL Sbjct: 123 AIADINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAY-----NPLFLYGGTGL 177 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 178 GKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 237 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEP 297 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA- 385 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 PELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTG 352 Query: 386 -PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 PI T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+ Sbjct: 353 RPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQL 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|120596834|ref|YP_961408.1| chromosomal replication initiation protein [Shewanella sp. W3-18-1] gi|146291112|ref|YP_001181536.1| chromosomal replication initiation protein [Shewanella putrefaciens CN-32] gi|166215331|sp|A4Y1A4|DNAA_SHEPC RecName: Full=Chromosomal replication initiator protein DnaA gi|166215333|sp|A1RDX7|DNAA_SHESW RecName: Full=Chromosomal replication initiator protein DnaA gi|120556927|gb|ABM22854.1| chromosomal replication initiator protein DnaA [Shewanella sp. W3-18-1] gi|145562802|gb|ABP73737.1| chromosomal replication initiator protein DnaA [Shewanella putrefaciens CN-32] gi|319424418|gb|ADV52492.1| chromosomal replication initiator protein DnaA [Shewanella putrefaciens 200] Length = 461 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 160/480 (33%), Positives = 254/480 (52%), Gaps = 38/480 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++ +Y+ I + Sbjct: 4 SLWQQCIGRLQDELPAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVREKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 F E+ + S A S PS K P ++P K T+ F Sbjct: 63 FTEQ----------MGSDAPKLRFDIGSRPSAKKFEPAPVATVRAPNTQTKATVGTYFNT 112 Query: 156 -----------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 S ++ + F F+EG SN++ AA +AE Y NPLF++ Sbjct: 113 QAEPIANANHRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGG 167 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N IK PN +VVY+ +E F+ A+++N K R++D L Sbjct: 168 TGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALF 227 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V Sbjct: 228 IDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVA 287 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ + Sbjct: 288 IEPPELETRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANAN 342 Query: 384 FA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 F PI T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RP Sbjct: 343 FTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARP 400 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAM LSK +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 401 RQVAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 460 >gi|322381372|ref|ZP_08055375.1| chromosomal replication initiation-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154948|gb|EFX47219.1| chromosomal replication initiation-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 441 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 148/439 (33%), Positives = 247/439 (56%), Gaps = 26/439 (5%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + + V + P NF K W+++RY + I+ E + ++ +V S Sbjct: 14 FDTWLKSTRATVFTDTYVVICAPNNFAKEWLESRYAKMISSTIYEFLGKQVEIKFIVES- 72 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 E+ +P + + P +I K P + ++ S + ++SR+ F TF+ G NR Sbjct: 73 -----EEDQVNP-VPEAVP---DIPKGPALGQEENYSNM----MNSRYTFDTFVIGQGNR 119 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE + Y NPLF++ VGLGKTHL+ AI + ++ P RV+Y+++ Sbjct: 120 FAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKTHLMHAIGHYVLEHNPEARVLYISS 174 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQ 293 E F F +A+RDN + ++ R ID+LLIDD+QF+ GK Q EF H N+L + KQ Sbjct: 175 EKFTNEFINAVRDNRGEDFRNKYRTIDVLLIDDIQFISGKEGTQEEFFHTFNALHEEGKQ 234 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + ++ E+ L I Sbjct: 235 IIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKK---AKAEN--LEIP 289 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIE 412 E ++++A + T+ REL+GA ++V S +T +A E L ++ + + + I+ Sbjct: 290 NEAMLYIANQIDTNIRELEGALIRVVAYSSLINQDITTHLAAEALKDIIPSSRPRVITIQ 349 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 DIQ+ V + Y + D + +R + V PRQVAMYLS+ +T S P+IG FG RDHTTV Sbjct: 350 DIQQKVGEFYGLKLEDFKARKRTKAVAFPRQVAMYLSRELTDFSLPKIGDAFGGRDHTTV 409 Query: 473 LHAVRKVEKMLETDITLKK 491 +HA K+ + ++ D L K Sbjct: 410 IHAHEKISEAVKKDQELYK 428 >gi|307256022|ref|ZP_07537810.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865444|gb|EFM97339.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 451 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 160/467 (34%), Positives = 262/467 (56%), Gaps = 25/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I L Sbjct: 7 SLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKFLAEIVDL 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + + +R V + E + SPS T +N SK Q + F + Sbjct: 66 ARF-LSKNDNLAVSIR-VGIKPAEHKSVSPSTT------SNNSKEEA----QESNKNFRT 113 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F++G SN++A AQ +A D+ G + NP ++ GLGKTHLL A+ Sbjct: 114 GLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGKTHLLHAV 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 170 GNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEA 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R +I Sbjct: 230 SQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAI 289 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 290 L-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAVR 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 345 EALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMALAKELTN 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 404 HSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 450 >gi|260912769|ref|ZP_05919255.1| ribosomal subunit interface protein [Pasteurella dagmatis ATCC 43325] gi|260633147|gb|EEX51312.1| ribosomal subunit interface protein [Pasteurella dagmatis ATCC 43325] Length = 453 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 159/452 (35%), Positives = 255/452 (56%), Gaps = 29/452 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 +++W + L+ N + L F+K + YLE +TK+ QE + G LV V Sbjct: 25 FSTWLRPLQADFNTPNSIILYASNVFIKQKVDESYLEQLTKIAQE----LSGNSDLVVQV 80 Query: 115 --ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 + EKT I + + + P ++ + ++P + VF F+EG S Sbjct: 81 RVGVKPEEKTVQQ-GINQTAVTEDKVGSKPQMVVRSYLNP--------KHVFENFVEGKS 131 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N++A AQ +A D+ G T+ NPLF++ GLGKTHLL AI N + +PN RV+Y+ Sbjct: 132 NQLARAVAQKVA--DNPGETSS--NPLFLYGGTGLGKTHLLHAIGNGILANKPNARVLYI 187 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 A F+ + +AIRDN K R++D LL+DD+QF K Q EF H+ N+L D+ Sbjct: 188 HANNFIQQLINAIRDNKMDEFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNNLFDAG 247 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 +Q++ +DR P E+E L+ R++SR G++ + + E R +IL + + E+ ++ Sbjct: 248 RQIILTSDRYPKEIEKLEERLKSRFGWGLTTAIEPPELETRVAIL-----LKKAEEKNIH 302 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKM 409 + EEV + + + T+ R+L+GA N++ F API T + E L ++ + K + Sbjct: 303 LPEEVAFFIGQKLRTNVRDLEGALNRVGANAEFMGAPI-TIDFVRETLKDMLAL-QDKLI 360 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 +E+IQ+ VA++Y I +DL R R++ RPRQ+AM LSK +T RS PEIG+ FGD+DH Sbjct: 361 TVENIQKTVAEYYRIKVSDLKGKSRSRSIARPRQLAMALSKELTNRSLPEIGKSFGDKDH 420 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TTVLHA RK+ ++ E + +L+++ L R +S Sbjct: 421 TTVLHACRKIAELREQEHSLEEDWSNLIRTLS 452 >gi|322513485|ref|ZP_08066595.1| ribosomal subunit interface protein [Actinobacillus ureae ATCC 25976] gi|322120704|gb|EFX92588.1| ribosomal subunit interface protein [Actinobacillus ureae ATCC 25976] Length = 447 Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 160/467 (34%), Positives = 262/467 (56%), Gaps = 25/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I L Sbjct: 3 SLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKFLAEIVDL 61 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + + +R V + E +S S T +N SK + Q + F + Sbjct: 62 ARF-LSKNDNLAVSIR-VGIKPAEHKPTSASTT------SNNSKEEV----QETNKNFRT 109 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F++G SN++A AQ IA D+ G + NP ++ GLGKTHLL A+ Sbjct: 110 GLNESLTFENFVQGKSNQLAKAVAQQIA--DNPGES--HCNPFSLYGGTGLGKTHLLHAV 165 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 166 GNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEA 225 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R +I Sbjct: 226 SQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAI 285 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 286 L-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAVR 340 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 341 EALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMALAKELTN 399 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 400 HSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 446 >gi|308188765|ref|YP_003932896.1| Chromosomal replication initiator protein dnaA [Pantoea vagans C9-1] gi|308059275|gb|ADO11447.1| Chromosomal replication initiator protein dnaA [Pantoea vagans C9-1] Length = 471 Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 158/474 (33%), Positives = 264/474 (55%), Gaps = 30/474 (6%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE---E 100 +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L E Sbjct: 11 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNSINALLNEFCGP 69 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLS----PINTNISKSPIILGKQTISPV--- 153 + E+ R V P+ S P + +S P+ ++I +P + + + V Sbjct: 70 NVPALRFEVGTRPVQQPAA--AVSQPVMASVSAPVMPVQSHIRPAPTQILRPSWDNVPAP 127 Query: 154 ----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 128 ADVTYRSNVNNRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 182 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 183 THLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 242 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 243 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 302 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 303 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 357 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 358 ITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 416 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 417 MAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|167621942|ref|YP_001672236.1| chromosomal replication initiation protein [Shewanella halifaxensis HAW-EB4] gi|189083278|sp|B0TLA4|DNAA_SHEHH RecName: Full=Chromosomal replication initiator protein DnaA gi|167351964|gb|ABZ74577.1| chromosomal replication initiator protein DnaA [Shewanella halifaxensis HAW-EB4] Length = 461 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 159/484 (32%), Positives = 261/484 (53%), Gaps = 46/484 (9%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ +V + P F+ W++++YL I + Sbjct: 4 SLWQQCIARLQDELSAQQFSMWIRPLQVEMEGDTLV-IYAPNRFVLDWVRDKYLNIINQF 62 Query: 97 FQEEHSRIQG---VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E+ +I R A P V+ TA+ I P++ ++ + P Sbjct: 63 FTEQMGSDAPNLRFDIGSRPSARPIVQATAA---IRTSRPVS-----------REVVKPS 108 Query: 154 FGSP-------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 F +P ++ + F F+EG SN++ AA +AE Y NPLF Sbjct: 109 FNTPHADPIANANHRSNINPTYQFDNFVEGKSNQLGKAAAMQVAENPGGAY-----NPLF 163 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ GLGKTHLL A+ N IK PN +VVY+ +E F+ A+++N K R++ Sbjct: 164 LYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV 223 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D L IDD+QF K Q EF H N+LL+ Q++ +D+ P E++ ++ R++SR G Sbjct: 224 DALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWG 283 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + E R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ Sbjct: 284 LTVAIEPPELETRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVI 338 Query: 380 FRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 +F PI T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+ Sbjct: 339 ANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRS 396 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQVAM LSK +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L Sbjct: 397 VARPRQVAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLI 456 Query: 498 RLIS 501 R +S Sbjct: 457 RTLS 460 >gi|302388600|ref|YP_003824421.1| chromosomal replication initiator protein DnaA [Thermosediminibacter oceani DSM 16646] gi|302199228|gb|ADL06798.1| chromosomal replication initiator protein DnaA [Thermosediminibacter oceani DSM 16646] Length = 449 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 259/471 (54%), Gaps = 40/471 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + S L N V + ++ + K S+ +I + VP FLK ++ RY + Sbjct: 10 QQVLKTLGSELNNDVS---FNTFLKPTKLVSIEDDIAIVEVPNEFLKGILEKRYANLLKD 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF- 154 + IL RSV++ K+ P+ + S + ++ I PV Sbjct: 67 ILGS---------ILNRSVSI-----------FFKIDPLASEEQASTVDTAEKDIKPVAE 106 Query: 155 --GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+S++ F TF+ G+SNR A A+ ++A+ + Y NP FI+ VGLGKTHL Sbjct: 107 EGQSTLNSKYTFDTFVVGNSNRFAHAASLAVAQAPAKAY-----NPFFIYGGVGLGKTHL 161 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + ++ P+ +VVY+++E F ++IRD+ + ++ RNID+LLIDD+QF+ Sbjct: 162 MHAIGHYILQHNPSCKVVYVSSEKFTNELINSIRDDKNVEFRNKYRNIDVLLIDDIQFIA 221 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E Sbjct: 222 GKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDFET 281 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ + + L + ++V+ +A + T+ REL+GA ++V S PI Sbjct: 282 RIAILRKKAMMEN-----LTVPDDVINFIATKIETNIRELEGALIRIVAFSSLTNKPI-D 335 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A+ +L L+ + K + + DI ++V H++I +D S +R + + RQ+AMYL Sbjct: 336 LDLAEHVLKDLLPNNKPKTVTVMDILQVVGGHFSIKIDDFKSKKRTKELAYARQIAMYLC 395 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTVLHA K+ + ++ D L +E LK+ I Sbjct: 396 RELTDYSLPKIGEEFGGRDHTTVLHACEKISRDIQRDAQLSSLIENLKKKI 446 >gi|260891931|ref|YP_003238028.1| chromosomal replication initiator protein DnaA [Ammonifex degensii KC4] gi|260864072|gb|ACX51178.1| chromosomal replication initiator protein DnaA [Ammonifex degensii KC4] Length = 444 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 161/463 (34%), Positives = 262/463 (56%), Gaps = 44/463 (9%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 + L+ V + W + L+ + + V+++VP +F K W+ RY + + F E Sbjct: 15 ANLEKVVARHSFEHWLKPLRPVACANQTVYIAVPNHFSKDWLTQRYAPILKQAFSEA--- 71 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-LDSRF 162 G+++ V+ + + + P+ N L + S V P L+ ++ Sbjct: 72 -LGMDLAVKFI-------------LAEEEPLYIN-------LEAKNNSAVITPPQLNPKY 110 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ G+SNR A AA ++AE + Y NPLFI+ VGLGKTHL+ AI + + Sbjct: 111 TFENFVVGNSNRFAHAAALAVAEAPARAY-----NPLFIYGGVGLGKTHLMHAIGHHILS 165 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 R+P+L+V Y+T E F A++ N ++ RN+D+LLIDD+QFL GK Q EF Sbjct: 166 RRPDLKVAYVTTEKFTNEMIDALQMNRTQQFREKYRNVDVLLIDDIQFLAGKERTQEEFF 225 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L ++A+Q+V ++DRPP E+ +L+ R+RSR + G+ + D+E R +IL+ + Sbjct: 226 HTFNTLYEAARQIVISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDFETRVAILRKK-- 283 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELL 397 +Q E+ + + +E L+ +A + ++ REL+GAF ++V +FA + +T E A +L Sbjct: 284 -AQLEN--VTVPDETLLFIADRIQSNIRELEGAFIRVV---AFAALTNSPITPETAATVL 337 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + + K++ +E IQ +VAK+YN+ DL +R R V PRQ+AMYL++ +T S Sbjct: 338 KDIFHAPRKKEVTVETIQEVVAKYYNLKPEDLRGKKRHRAVALPRQIAMYLARELTDLSL 397 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 P+IG FG RDHTTVLHA K+ L+ D+ L+ V EL+ R+ Sbjct: 398 PKIGELFGGRDHTTVLHACEKISAALKEDLKLQGVVSELINRI 440 >gi|134297882|ref|YP_001111378.1| chromosomal replication initiation protein [Desulfotomaculum reducens MI-1] gi|172044200|sp|A4J0F0|DNAA_DESRM RecName: Full=Chromosomal replication initiator protein DnaA gi|134050582|gb|ABO48553.1| chromosomal replication initiator protein DnaA [Desulfotomaculum reducens MI-1] Length = 441 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 157/465 (33%), Positives = 257/465 (55%), Gaps = 45/465 (9%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE-EHSR 103 RL+ QV + +W + K + N + + VP +F K+W+ +RY I + ++ H Sbjct: 15 RLEKQVNKHSFETWLTKCKPVAFYDNTIIIEVPDHFSKSWLADRYAPIIKQAYESIMHQE 74 Query: 104 IQGVEILV-RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 I IL + V P ++ +S + + L+ R+ Sbjct: 75 ISLQFILAGQEVDQPKPKERSSEETYINI--------------------------LNPRY 108 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ Sbjct: 109 TFDTFVVGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYILE 163 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 NL+V Y+T+E F ++IRD+ + ++ R++D+LLIDD+QFL+ K Q EF Sbjct: 164 NNQNLKVAYVTSEKFTNELINSIRDDQTVEFRNKYRSMDILLIDDIQFLEKKERTQEEFF 223 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + DYE R +IL+ + Sbjct: 224 HTFNTLYEANKQIIISSDRPPKEIATLEDRLRSRFEWGLITDMQSPDYETRVAILRKK-- 281 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELL 397 +Q E K NI +E + ++A + ++ REL+GA L+ +F+ + T ++A E+L Sbjct: 282 -AQLEAIK-NIPDETIAYIADKIQSNIRELEGA---LIRVSAFSSLEQRDATPQLAAEVL 336 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 ++ + K + I + VA Y + DL + +R R+V PRQVAMYL++ +T S Sbjct: 337 KDVIAPSKPKIITTPLIMQTVADFYGLRIEDLKAKKRTRSVAFPRQVAMYLARELTDLSL 396 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P+IG FG RDHTTVLHA K+ L +D L++ ++ LK+ I E Sbjct: 397 PKIGDEFGGRDHTTVLHACDKITTDLSSDPVLQETIKELKKRIGE 441 >gi|28896785|ref|NP_796390.1| chromosomal replication initiation protein [Vibrio parahaemolyticus RIMD 2210633] gi|260876543|ref|ZP_05888898.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus AN-5034] gi|31340039|sp|Q87TQ7|DNAA_VIBPA RecName: Full=Chromosomal replication initiator protein DnaA gi|28804993|dbj|BAC58274.1| chromosomal DNA replication initiator DnaA [Vibrio parahaemolyticus RIMD 2210633] gi|308090368|gb|EFO40063.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus AN-5034] gi|328471238|gb|EGF42140.1| chromosomal replication initiation protein [Vibrio parahaemolyticus 10329] Length = 468 Score = 258 bits (659), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 159/449 (35%), Positives = 255/449 (56%), Gaps = 34/449 (7%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEE-HSRIQGV--EILVRSVALP--------- 117 N + L P F+ W++++YL +IT+L QE + I + E+ R V+ P Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSITRLLQEYCGNDIPNLRFEVGSRPVSAPKPAPTRTPA 95 Query: 118 SVEKTASSPS-ITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFVFSTFIEGSSNRV 175 V +S+P+ + P++ P Q I+ + S ++ + F F+EG SN++ Sbjct: 96 DVAAESSAPAQLQARKPVHKTWDDDP-----QAIAAINHRSNMNPKHKFDNFVEGKSNQL 150 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 L AA+ +++ Y NPLF++ GLGKTHLL A+ NA + PN +VVY+ +E Sbjct: 151 GLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSE 205 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q+ Sbjct: 206 RFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQI 265 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+ ++ R++SR G++V + + E R +IL + + ED ++++ + Sbjct: 266 ILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLAD 320 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIE 412 EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I+ Sbjct: 321 EVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTID 378 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTV Sbjct: 379 NIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTV 438 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 LHA RK+E++ E +K++ L R +S Sbjct: 439 LHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|24371608|ref|NP_715650.1| chromosomal replication initiation protein [Shewanella oneidensis MR-1] gi|38257603|sp|Q8EKT2|DNAA_SHEON RecName: Full=Chromosomal replication initiator protein DnaA gi|24345358|gb|AAN53095.1|AE015452_8 chromosomal replication initiator protein DnaA [Shewanella oneidensis MR-1] Length = 460 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 258/472 (54%), Gaps = 23/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 F E+ ++ + PS +K +P P + +K+ + T PV Sbjct: 63 FTEQMGN-DAPKLRFDIGSRPSAKKPEPAPVAAVRVP--SPQTKASVGTAFNTTEPVANT 119 Query: 156 ---SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHL Sbjct: 120 NHRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHL 174 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 175 LHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFA 234 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E Sbjct: 235 NKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELET 294 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F PI T Sbjct: 295 RVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-T 348 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LS Sbjct: 349 IDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALS 407 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 408 KELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 459 >gi|254796642|ref|YP_003081478.1| chromosomal replication initiator protein DnaA [Neorickettsia risticii str. Illinois] gi|254589879|gb|ACT69241.1| chromosomal replication initiator protein DnaA [Neorickettsia risticii str. Illinois] Length = 598 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 157/477 (32%), Positives = 268/477 (56%), Gaps = 18/477 (3%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 +C E + + V+ +L+ G +Y SW + + F + V LSVPT F+K WI Sbjct: 133 KCTEGIGPAEWDRVTRKLRKFYGEKIYGSWLKFMSFKEMKCGQVFLSVPTGFIKEWITVN 192 Query: 89 YLETITKLFQEEHSRIQGVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIIL 145 YL I + E I +EI V AL S + +P + + IS Sbjct: 193 YLGNILGFLRNEDPTIISIEISVNKEHDRALESDREELVAPFV------KSKISGERDRF 246 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + + S S +D F +F+ G SN +A TA++ +AE NPLF++ V Sbjct: 247 DRGSFSESLSSSIDRSRTFDSFVVGKSNELAFTASKRVAEAAE--LPIPGSNPLFLYGGV 304 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ AI + RV+YL+AE FM ++ +A+++ ++ K R++D+L++ Sbjct: 305 GLGKTHLMHAIVWHIKANYADRRVIYLSAEKFMHKYITALKNKDMMSFKQIFRSVDVLMV 364 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H N+L++ KQ+V +ADR PS+L+ ++ RI+SRL G+ + Sbjct: 365 DDVQFISGKESTQEEFFHTFNALIEQNKQLVISADRSPSDLQGVEERIQSRLSWGLVADI 424 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 +E+R IL+++L ++ + + ++V+ +AR + ++ REL+GA N+++ Sbjct: 425 NQTTFELRVGILESKL---EQMKSDIVVPKKVVEFMARNIVSNVRELEGALNKVIAHSEI 481 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 ++T + A +LL+ ++ T + +E+I V++++ I +DL S RRV+ V RQ Sbjct: 482 TGSVVTVDSAKDLLADILRTNSVA-VTLENILAKVSEYFGIKISDLKSQRRVKDVAYARQ 540 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL-KRL 499 + M+L+K +T RS +IG+ G RDH TV+H+VRK+E +++ D + ++V +L KRL Sbjct: 541 MCMFLAKTLTQRSLIDIGKFLGGRDHATVIHSVRKIEILIKNDARVAEDVRILTKRL 597 >gi|33152000|ref|NP_873353.1| chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] gi|61212729|sp|Q7VMW1|DNAA_HAEDU RecName: Full=Chromosomal replication initiator protein DnaA gi|33148222|gb|AAP95742.1| chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] Length = 448 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 157/467 (33%), Positives = 262/467 (56%), Gaps = 28/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I L Sbjct: 7 SLWSDCLNHLQTKVSPIDYSTWLRPLQ-ASFANEELTLYAQNPFVENWVKDKFLTEIIDL 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 L ++ L + + P+ LS +TN + L + T+ F + Sbjct: 66 ----------ARFLSKNEQLKITIRVGNKPTEQNLSASSTNKEE----LTQDTVHK-FKT 110 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ R F F++G SN++A AQ +A D+ G + NP ++ GLGKTHLL A+ Sbjct: 111 GLNGRLTFDNFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGKTHLLHAV 166 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +KR P RVVY+ +E F+ A+++N N K R++D+L+IDD+QF K Sbjct: 167 GNEILKRNPQARVVYIHSERFVQDMVKALKNNTIENFKKFYRSLDVLMIDDIQFFAKKEA 226 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R +I Sbjct: 227 SQEEFFHTFNSLFERNKQIILASDHFPKNIENIEERIKSRLNWGVSTAIEPPELETRVAI 286 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + + EEV ++ + + T+ REL+GA N++ +F +T + Sbjct: 287 L-----MKKAEERNVELPEEVAFYLGQKLRTNVRELEGAINRVSAWCNFTKRQITIDAVR 341 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ++VA++YNI DL S R R++ RPRQ+AM L+K +T Sbjct: 342 ETLKDLIASYD-HLVTIENIQKIVAEYYNIKMADLKSKSRTRSIARPRQMAMALAKELTS 400 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA + + ++ +TD +++++ L R +S Sbjct: 401 HSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLS 447 >gi|114045514|ref|YP_736064.1| chromosomal replication initiation protein [Shewanella sp. MR-7] gi|123131884|sp|Q0I0U8|DNAA_SHESR RecName: Full=Chromosomal replication initiator protein DnaA gi|113886956|gb|ABI41007.1| chromosomal replication initiator protein DnaA [Shewanella sp. MR-7] Length = 460 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 257/472 (54%), Gaps = 23/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 F E+ ++ + PS +K +P P +K+ + T PV Sbjct: 63 FTEQMGN-DAPKLRFDIGSRPSAKKPEPAPVAAVRVP--NPQTKASVGTSFNTTEPVVNA 119 Query: 156 ---SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHL Sbjct: 120 NHRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHL 174 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 175 LHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFA 234 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E Sbjct: 235 NKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELET 294 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F PI T Sbjct: 295 RVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-T 348 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LS Sbjct: 349 IDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALS 407 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 408 KELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 459 >gi|291615643|ref|YP_003518385.1| DnaA [Pantoea ananatis LMG 20103] gi|291150673|gb|ADD75257.1| DnaA [Pantoea ananatis LMG 20103] Length = 472 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 158/471 (33%), Positives = 262/471 (55%), Gaps = 27/471 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L E Sbjct: 15 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNSINALLNEFCG- 72 Query: 104 IQGVEILVRSVALPSVEKTA--SSPSITKLS----PINTNISKSPIILGKQTISPV---- 153 V +L V V++ A S P++ +S P+ + + I+ P Sbjct: 73 -ANVPLLRFEVGTRPVQQAAAVSQPAMASVSAPAAPVQNRPAPAQIVRPSWDNVPAPADV 131 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 132 TYRSNVNNRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 186 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 187 LHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 246 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 247 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 306 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 307 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 361 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K Sbjct: 362 DFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAK 420 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 421 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 471 >gi|304398068|ref|ZP_07379943.1| chromosomal replication initiator protein DnaA [Pantoea sp. aB] gi|304354354|gb|EFM18726.1| chromosomal replication initiator protein DnaA [Pantoea sp. aB] Length = 471 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 159/474 (33%), Positives = 264/474 (55%), Gaps = 30/474 (6%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L E Sbjct: 11 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNSINALLNEFCG- 68 Query: 104 IQGVEILVRSVALPSVEKTA---SSPSITKLS----PINTNISKSPIILGKQTISPV--- 153 V L V V++ A S P + +S P+ ++I +P + + + V Sbjct: 69 -PNVPALRFEVGTRPVQQQAAAVSQPVMASVSAPVMPVQSHIRPAPAQIMRPSWDNVPAP 127 Query: 154 ----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 128 ADVTYRSNVNNRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 182 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 183 THLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 242 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 243 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 302 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 303 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 357 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 358 ITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 416 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 417 MAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|255020209|ref|ZP_05292278.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus caldus ATCC 51756] gi|254970351|gb|EET27844.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus caldus ATCC 51756] Length = 450 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 263/468 (56%), Gaps = 36/468 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++++ + +L+ P + +W + L+ H + L P F++ W++ R + +L Sbjct: 15 ALWSALCVQLELVTSPQQFNTWLRPLRGELQGHEL-RLLAPNPFVRDWVRER----MAEL 69 Query: 97 FQEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 +E+ RI G E++ ++++ A++ + + I S +P G ++P F Sbjct: 70 VKEQLQRIAPGFELVF------ALDEEAAAATSAPTASIAPERSSAP---GGHRLNPAFN 120 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 F +++EG SN++AL AA+ +A+ Y NPL+I+ VGLGKTHL+QA Sbjct: 121 --------FQSYVEGKSNQLALAAARQVAQHPGKSY-----NPLYIYGGVGLGKTHLMQA 167 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N ++RQP +V+Y+++E F+ +++ N + K R +D LLIDD+QF GK Sbjct: 168 VGNDILQRQPEAKVLYISSEGFIMDMVRSLQHNTINDFKQRYRKLDALLIDDIQFFAGKD 227 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L D +Q++ DR P E+E L+ R++SR G++V + HD E R + Sbjct: 228 RTQEEFFHTFNALFDGGRQIIITCDRYPKEVEGLEERLQSRFGWGLTVAIQPHDLETRMA 287 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIA 393 I+ + + ED + + EEV +A + + REL+GA +++ +F + E A Sbjct: 288 IV-----LCKAEDHGIQLPEEVAFFIAEKIRSHVRELEGALRRVIAHVNFTHKPYSVESA 342 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L++ + + + +E+IQ++VA +Y+I +++ S RR R V RPRQ+AM L+K +T Sbjct: 343 KEALRDLIDV-QKRMVSLENIQKVVADYYHIRASEMQSKRRNRNVARPRQMAMALTKELT 401 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA R++EK+ ++++ L R++ Sbjct: 402 RHSLPEIGEAFGGRDHTTVLHACRQIEKLRRESAQIEEDYRNLIRILG 449 >gi|15603026|ref|NP_246098.1| chromosomal replication initiation protein [Pasteurella multocida subsp. multocida str. Pm70] gi|14194669|sp|Q9CLQ4|DNAA_PASMU RecName: Full=Chromosomal replication initiator protein DnaA gi|12721509|gb|AAK03245.1| DnaA [Pasteurella multocida subsp. multocida str. Pm70] Length = 451 Score = 257 bits (657), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 160/461 (34%), Positives = 254/461 (55%), Gaps = 29/461 (6%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++Q+ +++W + L+ + N + L F+K + YL +TK+ QE + Sbjct: 15 QLQDQISLTDFSTWLRPLQADFSVQNTIVLYASNVFIKQKVDESYLAQLTKVAQE----L 70 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP--VFGSPLDSRF 162 G LV V K P P S P K+ P V S L+ + Sbjct: 71 SGNAELVVQV------KVGVKPEPKPAQP-----SALPTHHNKEENKPQTVIRSYLNPKH 119 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 VF F+EG SN++A AQ +A D+ G + NPLF++ GLGKTHLL AI N + Sbjct: 120 VFENFVEGKSNQLARAVAQKVA--DNPGEPSS--NPLFLYGGTGLGKTHLLHAIGNGILS 175 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 R N RV+Y+ A FM + +A+RDN K R++D LL+DD+QF K Q EF Sbjct: 176 RNTNARVLYIHANNFMQQMVNAVRDNKMDEFKKFYRSLDALLVDDIQFFAEKEKTQEEFF 235 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H+ N+L D+ +Q++ +DR P E+E L+ R++SR G++ + + E R +IL Sbjct: 236 HIFNNLFDTGRQIILTSDRYPKEIEKLEERLKSRFGWGLTTAIEPPELETRVAIL----- 290 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 + + E+ + + EEV + + + T+ R+L+GA N++ F +T + E L + Sbjct: 291 LKKAEEKNIYLPEEVAFFIGQKLRTNVRDLEGALNRVSANAEFMGAAITIDFVRETLKDM 350 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + + K + +E+IQ++VA++Y I +DL R R++ RPRQ+AM LSK +T RS PEI Sbjct: 351 LAL-QDKLVTVENIQKVVAEYYRIKVSDLKGKSRSRSIARPRQLAMALSKELTNRSLPEI 409 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G+ FGD+DHTTVLHA RK+ ++ E + +L+++ L R +S Sbjct: 410 GKNFGDKDHTTVLHACRKIAELREQEHSLEEDWSNLIRTLS 450 >gi|113968347|ref|YP_732140.1| chromosomal replication initiation protein [Shewanella sp. MR-4] gi|123130898|sp|Q0HPD4|DNAA_SHESM RecName: Full=Chromosomal replication initiator protein DnaA gi|113883031|gb|ABI37083.1| chromosomal replication initiator protein DnaA [Shewanella sp. MR-4] Length = 460 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 257/472 (54%), Gaps = 23/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 F E+ ++ + PS +K +P P +K+ + T PV Sbjct: 63 FTEQMGN-DAPKLRFDIGSRPSAKKPEPAPVAAVRVP--NPQTKASVGTSFNTTEPVANT 119 Query: 156 ---SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHL Sbjct: 120 NHRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHL 174 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 175 LHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFA 234 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E Sbjct: 235 NKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELET 294 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F PI T Sbjct: 295 RVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-T 348 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LS Sbjct: 349 IDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALS 407 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 408 KELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 459 >gi|320157816|ref|YP_004190195.1| chromosomal replication initiator protein DnaA [Vibrio vulnificus MO6-24/O] gi|319933128|gb|ADV87992.1| chromosomal replication initiator protein DnaA [Vibrio vulnificus MO6-24/O] Length = 445 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 158/444 (35%), Positives = 253/444 (56%), Gaps = 24/444 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR-IQGV--EILVRSVALPSVEKTASSP 126 N + L P F+ W++++YL +I +L QE I + E+ R VA P T + Sbjct: 13 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGHDIPNLRFEVGSRPVAAPKPAPTRTPA 72 Query: 127 SITKLSPINTNI-SKSPIIL----GKQTISPV-FGSPLDSRFVFSTFIEGSSNRVALTAA 180 + S + ++ P+ Q I+ + S ++ + F+ F+EG SN++ L AA Sbjct: 73 DVAAESSAPAQLQARKPVHKTWDDDAQAIADINHRSNVNPKHKFNNFVEGKSNQLGLAAA 132 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 + +A+ Y NPLF++ GLGKTHLL A+ NA + +PN +VVY+ +E F+ Sbjct: 133 RQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQD 187 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +D Sbjct: 188 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSD 247 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+ ++ R++SR G++V + + E R +IL + + ED ++++ +EV Sbjct: 248 RYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLADEVAFF 302 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ Sbjct: 303 IAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKT 360 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA R Sbjct: 361 VAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACR 420 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+E++ E +K++ L R +S Sbjct: 421 KIEQLREESHDIKEDYSNLIRTLS 444 >gi|329297781|ref|ZP_08255117.1| chromosomal replication initiation protein [Plautia stali symbiont] Length = 467 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 157/468 (33%), Positives = 263/468 (56%), Gaps = 22/468 (4%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE---E 100 +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L E Sbjct: 11 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNSINGLLNEFCGA 69 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPI-NTNISKSPIILGKQTI-SPV---FG 155 + + E+ R V + + A + S++ +P N P+ ++ +P + Sbjct: 70 NVPLLRFEVGTRPVVPVAATQPAMASSVSAPAPAENRPAPAQPLRPSWDSVPAPANVTYR 129 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ R F F+EG SN++A AA+ +A+ S Y NPLF++ GLGKTHLL A Sbjct: 130 SNVNKRHNFDNFVEGKSNQLARAAARQVADNPSGAY-----NPLFLYGGTGLGKTHLLHA 184 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 185 VGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 244 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R + Sbjct: 245 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 304 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 305 IL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFV 359 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K +T Sbjct: 360 REALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKELT 418 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 419 NHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|322830734|ref|YP_004210761.1| chromosomal replication initiator protein DnaA [Rahnella sp. Y9602] gi|321165935|gb|ADW71634.1| chromosomal replication initiator protein DnaA [Rahnella sp. Y9602] Length = 463 Score = 257 bits (656), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 157/476 (32%), Positives = 268/476 (56%), Gaps = 28/476 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTAS--SPSITKLSPINTNISKSPIILGK 147 + R + G + +++ V+ P +S +P+I +L+P + SP+ + Sbjct: 63 LNDFCGTDAPLLRFEVGSKPVIQRVSQPVAASVSSQAAPAIPRLAPSRPSWDSSPV---Q 119 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 120 PELS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 172 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 173 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 232 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 233 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 292 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 293 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 347 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 348 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 406 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|315634815|ref|ZP_07890097.1| ribosomal subunit interface protein [Aggregatibacter segnis ATCC 33393] gi|315476367|gb|EFU67117.1| ribosomal subunit interface protein [Aggregatibacter segnis ATCC 33393] Length = 453 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 259/467 (55%), Gaps = 39/467 (8%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH--- 101 +L++++ D + W L+ + NI+ L F++ W+ + YL IT + ++ Sbjct: 15 QLQDKIPTDDFKIWLYPLQAETSASNIL-LYASNAFVQKWVIDNYLPLITDIARQTSANP 73 Query: 102 ----SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 S I+G++ V P+ +++A S K + +K+P + S Sbjct: 74 NLSVSVIEGIKPTAPKVEKPTKKQSAVGFSEEK------STNKTP-----------YHSN 116 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+++ VF F+EG SN++A AQ +A D+ G T NPLF++ GLGKTHLL AI Sbjct: 117 LNTKLVFENFVEGKSNQLARAVAQKVA--DNPGEQTA--NPLFLYGGTGLGKTHLLHAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N I P RVVY+ +E F+ + + IRDN K R++D LL+DD+QF K Sbjct: 173 NGIIANNPEARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKT 232 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H+ N+L + +Q++ +DR P E+E ++ R++SR G++ + D E R +IL Sbjct: 233 QEEFFHIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL 292 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E+ +++ +V + + + T+ REL+GA N++ F PI T + Sbjct: 293 -----MKKAEENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPI-TIDFVR 346 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L ++ + K + +++IQ++VA++Y I +DL S R R+V RPRQVAM L+K +T Sbjct: 347 ETLKDMLAL-QDKLVTVDNIQKVVAEYYRIKVSDLKSKNRSRSVARPRQVAMALAKELTN 405 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RS PEIG+ FGDRDHTTVLHA R + +TD ++++ L R +S Sbjct: 406 RSLPEIGKSFGDRDHTTVLHACRTIAGFRDTDPNIQEDWANLIRTLS 452 >gi|158319060|ref|YP_001511567.1| chromosomal replication initiation protein [Alkaliphilus oremlandii OhILAs] gi|167016896|sp|A8MEA0|DNAA_ALKOO RecName: Full=Chromosomal replication initiator protein DnaA gi|158139259|gb|ABW17571.1| chromosomal replication initiator protein DnaA [Alkaliphilus oremlandii OhILAs] Length = 451 Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 153/448 (34%), Positives = 257/448 (57%), Gaps = 26/448 (5%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + ++ S+ N + L VP F K + RY I+ ++ S+ + +V Sbjct: 25 FTTWIKSIEVISLEGNTMILGVPNVFTKDILTARYATLISNALKQTTSKNFEIRFIV--- 81 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 PS EK + + K + NIS + Q +S + L+ ++ F TF+ G+SNR Sbjct: 82 --PSEEKISKTEESQKKLEGSVNIS----VASDQFVS----NNLNPKYTFDTFVIGNSNR 131 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE + Y NPLF++ VGLGKTHL+ AI + ++ P +VVY+++ Sbjct: 132 FAHAASLAVAESPAKAY-----NPLFLYGGVGLGKTHLMHAIGHFILQNNPKAKVVYVSS 186 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F ++IR + + ++ R ID+LL+DD+QF+ GK Q EF H N+L +S KQ Sbjct: 187 ETFTNELINSIRHDRNVEFRNRFRTIDVLLVDDIQFIAGKESTQEEFFHTFNALHESNKQ 246 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL + +Q E+ +++ Sbjct: 247 IIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILYKK---AQMEN--IDVP 301 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIE 412 EVL H+A+ + ++ REL+GA ++V S +T E+A E L L + + +++ I+ Sbjct: 302 NEVLTHIAKKIQSNIRELEGALIRIVAYSSLTNSEITVELASEALKELF-SSKARQLNID 360 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I+ +VA YN+ D S +R R++ PRQ+AMYLS+ +T S P+IG FG RDHTTV Sbjct: 361 LIKEVVANKYNMKIEDFNSKKRTRSISYPRQIAMYLSRELTDLSLPKIGEEFGGRDHTTV 420 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLI 500 +HA K+ K + D +K+++E + + I Sbjct: 421 MHAHEKISKDILADDNIKEKIERIAKEI 448 >gi|147676336|ref|YP_001210551.1| chromosomal replication initiation protein [Pelotomaculum thermopropionicum SI] gi|146272433|dbj|BAF58182.1| ATPase [Pelotomaculum thermopropionicum SI] Length = 447 Score = 256 bits (655), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 151/459 (32%), Positives = 254/459 (55%), Gaps = 34/459 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ ++ + +W + LK N V + VP +F + W+ RY I +F+ + Sbjct: 17 LEKKINRHSFETWLKPLKPLGYHENTVIIEVPNHFSREWLNERYAPLIKNIFRHILEQDI 76 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 GV+ L+ + S+ + P+ + K L+ ++ F Sbjct: 77 GVQFLL-----------SGEVSVVESDPLKKAV--------KNNFEEASTIHLNPKYTFD 117 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SNR A A ++AE + Y NPLFI+ VGLGKTHL+ AI ++ Sbjct: 118 TFVVGNSNRFAHAACLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGQHILEHSN 172 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 ++V Y+T+E F +AI+D+ + ++ R +D+LL+DD+QFL GK Q EF H Sbjct: 173 KMKVSYVTSEKFTNELINAIKDDKTVEFRNKYRGMDILLVDDIQFLAGKERTQEEFFHTF 232 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + SQ Sbjct: 233 NTLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKK---SQ 289 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNT 403 +E+ L + ++ + ++A + ++ REL+GA +++ S ++ E+A E+L ++ Sbjct: 290 QEN--LFVPDDTIFYIANRIQSNIRELEGALIRVIAYASLNGKEISPELAAEVLKDILPP 347 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + +++ +E IQ +VA +YNI D S R R V PRQVAMYL++ +T S P+IG Sbjct: 348 EKPRQITVELIQEVVAGYYNIRVEDFKSKNRSRAVAFPRQVAMYLARELTDLSLPKIGEY 407 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTV+HA K+ L D++L+ E +K+LIS+ Sbjct: 408 FGGRDHTTVIHAYEKINNELNIDMSLQ---ESIKQLISK 443 >gi|302035395|ref|YP_003795717.1| chromosomal replication initiator protein DnaA [Candidatus Nitrospira defluvii] gi|300603459|emb|CBK39789.1| Chromosomal replication initiator protein DnaA [Candidatus Nitrospira defluvii] Length = 446 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 161/465 (34%), Positives = 252/465 (54%), Gaps = 40/465 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ +V V+ +WF + + +L+VP F W+ Y + L E S Q Sbjct: 9 IQEKVPKQVFETWFTPVVLDRIEDTTAYLAVPNKFFGEWLGEHYRD----LLAEAVSVAQ 64 Query: 106 G-----VEILVRSVALPSV--EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 G V +V + +PS + S + T + SK G L Sbjct: 65 GDGHLDVSFVVHNKQVPSTLPAQQESGSADTAGRGFVASRSKR-------------GVQL 111 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + ++ F +F+ G+ N+ A A ++AE + Y NPLF++ VGLGKTHLL AI N Sbjct: 112 NPKYTFKSFVVGAGNQFAHAACMAVAEQPAKAY-----NPLFLYGGVGLGKTHLLNAIGN 166 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 +R +LR+ YLT E F ++IR + ++L+ RN+D+L+IDD+QFL GK Q Sbjct: 167 YLAERS-DLRIAYLTTEQFTNEVINSIRYDKMIDLRKRYRNVDMLMIDDIQFLAGKERTQ 225 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L ++ KQ+V ++DR P ++ ++ R+RSR + G+ L D E R +IL+ Sbjct: 226 EEFFHTFNTLYEAHKQIVLSSDRFPKDMPDIEERLRSRFEWGLIADLQPPDVETRIAILR 285 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 + ED ++ + E+V+ +A T+ + REL+G+ ++ S +T ++A + Sbjct: 286 KK-----SEDERIALPEDVIHFLATTMKNNIRELEGSLVRVGAYSSLTGQTITLDMAKNV 340 Query: 397 LSHLVNTGETKKM-RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ G+ KK+ IEDIQ V Y++ DL S RR +T+V PRQ+AMYL + +T Sbjct: 341 LRDLI--GDKKKIVSIEDIQEAVGSKYHLKIADLKSRRRSKTLVHPRQIAMYLCRELTDA 398 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SFPEIGR+FG +DHTT++HA R++ K E D TL +E LK I Sbjct: 399 SFPEIGRQFGGKDHTTIIHACRQISKAKEADSTLHTTLEGLKEQI 443 >gi|85374940|ref|YP_459002.1| chromosomal replication initiation protein [Erythrobacter litoralis HTCC2594] gi|84788023|gb|ABC64205.1| chromosomal replication initiator protein [Erythrobacter litoralis HTCC2594] Length = 488 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 166/488 (34%), Positives = 270/488 (55%), Gaps = 21/488 (4%) Query: 18 AEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLS 75 A++ D+ + VN + + +S L+ +G +++ W + ++ + + L Sbjct: 11 AKRNKKEDLMEDLEAVNLAADWADISQGLRKDLGHQLHSQWIKPIQLGAFDDETGTLDLF 70 Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN 135 +PT F W+K+R+ + +T ++ I+ V I V P K P N Sbjct: 71 LPTEFSANWVKDRFADRLTLAWKIARGNIRNVNIQVH----PGRRKVPDIALGDGRRPAN 126 Query: 136 TNISKSPIILGKQTISPV-FGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 ++ G I+ F S LD+ F+ FI G +N +A AAQ +A + ++ Sbjct: 127 DGGDMGIMVNGPGVINDAGFTSSVGLDASLTFAAFITGETNILACNAAQRMAATEQPQFS 186 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 PL+I A G GKTHLL AI + + P R+ Y +AE FM F A++ N + Sbjct: 187 -----PLYIKAGTGQGKTHLLHAIGHQYLASHPRARIFYCSAERFMVEFVQALKANQMIE 241 Query: 253 LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K LR+ DLLL+DD+QF+ GK Q E + ++ LL K++V AADR P L+ ++PR Sbjct: 242 FKARLRSFDLLLVDDIQFIIGKASAQEELLYTIDHLLAEGKRLVFAADRAPQALDGVEPR 301 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + SRL G+ + D E+R IL+++L L++ E+V+ +ART+T + REL Sbjct: 302 LLSRLSMGLVADIQAADIELRKKILESKLT----RFAPLDVPEDVIEFLARTITRNVREL 357 Query: 372 DGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 G N+L+ + +++ ++A+E L+ ++ + +++ I++IQR V + Y I R+++ Sbjct: 358 VGGLNKLIAYAQLTGQVVSLQLAEEQLTDIL-SANRRRITIDEIQRTVCQFYRIDRSEMS 416 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 S RR R VVRPRQVAMYLSK++TPRS+PEIGR+FG RDH+TV+HAVR +E + + D + Sbjct: 417 SKRRARAVVRPRQVAMYLSKVLTPRSYPEIGRKFGGRDHSTVIHAVRLIEDLRQRDADMD 476 Query: 491 KEVELLKR 498 +V L R Sbjct: 477 GDVRSLLR 484 >gi|68249578|ref|YP_248690.1| chromosomal replication initiation protein [Haemophilus influenzae 86-028NP] gi|68057777|gb|AAX88030.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae 86-028NP] Length = 454 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 263/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q + Q E+ ++L E +P + + +P + S+S + ++ + Sbjct: 61 IQQICQ---TLTQNPEL---RISLK--EGVKPAPKVVENTPNISLRSESAVDFQAESSAS 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 VKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEPSA----NPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ E + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|196249894|ref|ZP_03148590.1| chromosomal replication initiator protein DnaA [Geobacillus sp. G11MC16] gi|196210770|gb|EDY05533.1| chromosomal replication initiator protein DnaA [Geobacillus sp. G11MC16] Length = 351 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 134/327 (40%), Positives = 206/327 (62%), Gaps = 12/327 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A Sbjct: 23 SMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHA 77 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QFL GK Sbjct: 78 IGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQFLAGKE 137 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R + Sbjct: 138 QTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIA 197 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+ + +I EV++++A + ++ REL+GA ++V S +TA++A Sbjct: 198 ILRKKAKAE-----GFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEITADLA 252 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L ++ + + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYLS+ +T Sbjct: 253 AEALKDIIPSAKPKVITIQDIQRVVGQHFNIKLEDFKAKKRTKSVAFPRQIAMYLSRELT 312 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVE 480 S P+IG FG RDHTTV+HA K + Sbjct: 313 DCSLPKIGDEFGGRDHTTVIHAHEKYQ 339 >gi|269103820|ref|ZP_06156517.1| chromosomal replication initiator protein dnaA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163718|gb|EEZ42214.1| chromosomal replication initiator protein dnaA [Photobacterium damselae subsp. damselae CIP 102761] Length = 474 Score = 256 bits (654), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 159/483 (32%), Positives = 263/483 (54%), Gaps = 31/483 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L Sbjct: 4 SLWLQCLQRLQEELPATEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNNINRL 62 Query: 97 FQE---EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI--ILGKQTIS 151 E + I E+ + ++ PS+ A +P +T + +PI + I Sbjct: 63 LNEFCGQDVPILRFEVGSKPISAPSI-TPAPAPILTPTPIPVVTPAPAPIEAAVMPADIL 121 Query: 152 PVFGSP-----------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 P P ++ + F+ F+EG SN++ L A + +A+ Y NPLF Sbjct: 122 PAVAHPAAQQAGGCRSNVNPKHNFNNFVEGKSNQLGLAACRQVADNPGAAY-----NPLF 176 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ GLGKTHLL A+ NA R+PN +VVY+ +E F+ A+++N K R++ Sbjct: 177 LYGGTGLGKTHLLHAVGNAIADRKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV 236 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G Sbjct: 237 DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWG 296 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + E R +IL + + ED + + +EV +A+ + ++ REL+GA N+++ Sbjct: 297 LTVAIEPPELETRVAIL-----MKKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRVI 351 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +F +T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V Sbjct: 352 ANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSV 410 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R Sbjct: 411 ARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIR 470 Query: 499 LIS 501 +S Sbjct: 471 TLS 473 >gi|251791868|ref|YP_003006588.1| chromosomal replication initiation protein [Aggregatibacter aphrophilus NJ8700] gi|247533255|gb|ACS96501.1| chromosomal replication initiator protein DnaA [Aggregatibacter aphrophilus NJ8700] Length = 453 Score = 256 bits (654), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 154/462 (33%), Positives = 257/462 (55%), Gaps = 29/462 (6%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 ++++++ D + W L+ V N + L F++ W+ + YL IT + Q+ + Sbjct: 15 QIQDKIPADDFKIWLYPLQ-ADVTANSILLYASNAFVQKWVIDNYLPLITDIAQQTSANP 73 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSP--INTNISKSPIILGKQTISPVFGSPLDSRF 162 ++ + P K + T P ++N +KS + S L+++ Sbjct: 74 NLTVSIIEGIK-PEAPKAVAKSKATNTPPEEKSSNSNKS-----------TYNSNLNTKL 121 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +F F+EG SN++A AQ +A D+ G T NPLF++ GLGKTHLL AI N I Sbjct: 122 IFDNFVEGKSNQLARAVAQKVA--DNPGEQTA--NPLFLYGGTGLGKTHLLHAIGNGIIA 177 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 P+ RVVY+ +E F+ + + IRDN K R++D LL+DD+QF K Q EF Sbjct: 178 NNPDARVVYIHSERFVQQVVTYIRDNKMEEFKKFYRSLDALLVDDIQFFSDKEKTQEEFF 237 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H+ N+L + +Q++ +DR P E+E ++ R++SR G++ + D E R +IL Sbjct: 238 HIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL----- 292 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSH 399 + + ++ + + +V + + + T+ REL+GA N++ F PI T + E L Sbjct: 293 MKKADENNIELPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPI-TIDFVRETLKD 351 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 ++ + K + +++IQ++VA++Y I +DL S R R++ RPRQV+M L+K +T RS PE Sbjct: 352 MLAL-QDKLVTVDNIQKVVAEYYRIKVSDLKSKNRSRSITRPRQVSMALAKELTNRSLPE 410 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG+ FGDRDHTTVLHA RKV ++ ET+ ++++ L R++S Sbjct: 411 IGKSFGDRDHTTVLHACRKVVELRETEPDIQEDWANLIRILS 452 >gi|91228348|ref|ZP_01262276.1| chromosomal replication initiation protein [Vibrio alginolyticus 12G01] gi|262392783|ref|YP_003284637.1| chromosomal replication initiator protein dnaA [Vibrio sp. Ex25] gi|269965278|ref|ZP_06179399.1| chromosomal replication initiation protein [Vibrio alginolyticus 40B] gi|91188108|gb|EAS74412.1| chromosomal replication initiation protein [Vibrio alginolyticus 12G01] gi|262336377|gb|ACY50172.1| chromosomal replication initiator protein dnaA [Vibrio sp. Ex25] gi|269830079|gb|EEZ84307.1| chromosomal replication initiation protein [Vibrio alginolyticus 40B] Length = 468 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 157/444 (35%), Positives = 251/444 (56%), Gaps = 24/444 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEE-HSRIQGV--EILVRSVALPSVEKTASSP 126 N + L P F+ W++++YL IT+L QE I + E+ R V+ P T + Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNNITRLLQEYCGGDIPNLRFEVGSRPVSAPKPAPTRTPA 95 Query: 127 SITKLSPINTNI-SKSPIIL----GKQTISPV-FGSPLDSRFVFSTFIEGSSNRVALTAA 180 + S + ++ P+ Q I+ + S ++ + F F+EG SN++ L AA Sbjct: 96 DVAAESSAPAQLQARKPVHKTWDDDAQAIAAINHRSNMNPKHKFDNFVEGKSNQLGLAAA 155 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 + +++ Y NPLF++ GLGKTHLL A+ NA + PN +VVY+ +E F+ Sbjct: 156 RQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQD 210 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +D Sbjct: 211 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSD 270 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+ ++ R++SR G++V + + E R +IL + + ED ++++ +EV Sbjct: 271 RYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLADEVAFF 325 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ Sbjct: 326 IAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKT 383 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA R Sbjct: 384 VAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACR 443 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+E++ E +K++ L R +S Sbjct: 444 KIEQLREESHDIKEDYSNLIRTLS 467 >gi|269925124|ref|YP_003321747.1| chromosomal replication initiator protein DnaA [Thermobaculum terrenum ATCC BAA-798] gi|269788784|gb|ACZ40925.1| chromosomal replication initiator protein DnaA [Thermobaculum terrenum ATCC BAA-798] Length = 456 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 259/474 (54%), Gaps = 27/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N + ++ V L+ ++ P + +W + S+ + +SVPT+F + I+ ++ Sbjct: 1 MNPKQVWQAVLGELEVRLNPAQFETWIKNTSLVSLDEDEAVISVPTSFAQMTIERKFEPE 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + R V +V + + + S+ S + +P++ Q S Sbjct: 61 IRRSLSNILHRPVQVSFVVNGIISSNERSSRSNESSVE----------APLLNAAQNTST 110 Query: 153 VFG---SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 FG +PL+ R+ F FI GSSNR+A A ++AE + Y NPLF++ VGLGK Sbjct: 111 QFGAPNTPLNPRYTFENFIVGSSNRMAHAACMAVAEHPAEAY-----NPLFLYGGVGLGK 165 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI N ++K +P LRV+Y+++E F +AIR++ + R+ID+LLIDD+Q Sbjct: 166 THLLHAIGNHALKLKPYLRVLYVSSEQFTNDLINAIREHRTEEFRARYRSIDILLIDDIQ 225 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N L + KQ+V +DRPP + +L R+RSR +GG+ + L D Sbjct: 226 FIAGKESTQEEFFHTFNHLHGANKQIVMTSDRPPKAIATLQDRLRSRFEGGLMTEVNLPD 285 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV--FRHSFAP 386 E R +IL+ + E+ +++ ++VL +AR V ++ REL+GA N +V R + P Sbjct: 286 LETRIAILR-----IKAENKGVDLPDDVLELIARKVQSNIRELEGALNSIVALARLTGEP 340 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 I T A E L+ + +++ E I + VA +Y + L R R VV PRQVAM Sbjct: 341 I-TLATAAEALNDTTMARKKRQITPERILQAVASYYGVDEKLLKGKTRAREVVIPRQVAM 399 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 Y+ + T +S EIG G RDHTTVLH + KVEK +E D L+++V ++ ++ Sbjct: 400 YIMREDTDQSLSEIGAILGGRDHTTVLHGITKVEKDIEVDTKLRQDVMTVREML 453 >gi|83588876|ref|YP_428885.1| chromosomal replication initiation protein [Moorella thermoacetica ATCC 39073] gi|83571790|gb|ABC18342.1| chromosomal replication initiator protein DnaA [Moorella thermoacetica ATCC 39073] Length = 442 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 251/457 (54%), Gaps = 40/457 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ QV +WF + ++ N + L+V F + +I++RY L QE ++ Sbjct: 17 LEKQVSTPALETWFYEARPVTMQGNTLVLAVANEFARDYIQSRYY----PLIQEALQQVL 72 Query: 106 GVEIL-VRSVALP-SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 G +I+ ++ + P S P + S PL+ ++ Sbjct: 73 GRKIIKIQVICFPLSSSNQRQEPELEDPS----------------------LPPLNPKYT 110 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TF+ G+SNR A A ++AE + Y NPLFI+ VGLGKTHL+QAI + + Sbjct: 111 FETFVVGNSNRFAHAACLAVAESPASSY-----NPLFIYGGVGLGKTHLMQAIGHRVRQH 165 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 P LRV+Y+++E F +AI+D + RNID+LLIDD+QFL K Q EF H Sbjct: 166 LPELRVMYISSEKFTNDLINAIKDKATEQFRTKYRNIDVLLIDDIQFLAKKESTQEEFFH 225 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + A+ Sbjct: 226 TFNHLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRMAILRKK-AV 284 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLV 401 ++ +N+ +EV+ +A+ + ++ REL+GA ++ +F +T +A+E+L ++ Sbjct: 285 AE----GINLPDEVMFFIAQKIDSNIRELEGALIRVAAYANFTKKEITPGLAEEILKDVL 340 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + K + I IQ VA ++N+ DL + +R R+V PRQ+AMYL + +T S P+IG Sbjct: 341 DLARPKPITIRLIQETVANYFNLKVEDLKAKKRTRSVAYPRQIAMYLCRELTESSLPDIG 400 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + FG RDHTTVLHA K+ L TD +L + + +++ Sbjct: 401 KEFGGRDHTTVLHAYDKIRDDLNTDPSLPQVIAQIRQ 437 >gi|254442816|ref|ZP_05056292.1| chromosomal replication initiator protein DnaA [Verrucomicrobiae bacterium DG1235] gi|198257124|gb|EDY81432.1| chromosomal replication initiator protein DnaA [Verrucomicrobiae bacterium DG1235] Length = 461 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 256/473 (54%), Gaps = 37/473 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRL-KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE 100 V S L + D++ SWF L + NIV L V F WI + YL+ I K FQ + Sbjct: 14 VRSELSQVLPADIFQSWFTDLVCLEADGENIV-LGVQNAFTAYWISDNYLDLIAKSFQAQ 72 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP--- 157 + P A+ K P + +++ +P T +P +P Sbjct: 73 -------------LGFPVTVSIANQEKAAKEEPASEDLA-APTRERLVTETPRPRAPTAK 118 Query: 158 ------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ R F F+ GS++++A A+ ++A + Y NPLF++ GLGKTH Sbjct: 119 KTGEANLNPRNTFENFVIGSNSQLAHAASIAVAHAPAGAY-----NPLFLYGETGLGKTH 173 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ A+ + + +P RVVYL++E F F SAI++N + RN+D+LLIDD+QFL Sbjct: 174 LMHAVGHHILANRPEARVVYLSSEKFTNEFISAIQENTLTKFRQRYRNVDVLLIDDVQFL 233 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK IQ EF H N L +S KQ+ ++DRP +E+ L+ R+ SR Q G+ + D+E Sbjct: 234 SGKERIQEEFFHTFNDLFESQKQIFLSSDRPANEIAKLESRLVSRFQWGLVTDIQAPDFE 293 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILT 389 R +IL+ + A+ D I++EVL +A+ + + R L+GA ++ S L Sbjct: 294 TRVAILRKK-ALQHNYD----ISDEVLHFIAKHIVKNIRRLEGALIKVCSYSSLTNKPLN 348 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 I ++LLS ++ +++ I+ IQ+ VA+++ + +D+LS RR + PRQ+AMYLS Sbjct: 349 IAICEQLLSDVLMEAAKQQLNIDTIQKKVAEYFELRHSDMLSRRRPAHIAVPRQIAMYLS 408 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S E+G FG RDH TV+HA ++V+ ++E D +++ VE LK L+++ Sbjct: 409 RSLTKHSLQEVGEAFGGRDHGTVIHACKQVDNLVEQDDSVRHSVEYLKNLLAK 461 >gi|284007063|emb|CBA72338.1| chromosomal replication initiator protein [Arsenophonus nasoniae] Length = 461 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 264/472 (55%), Gaps = 22/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYINNINEL 62 Query: 97 ---FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP- 152 F E+ + PS T ++ + T +PIN+ I S + P Sbjct: 63 LSDFCGSDVPALKFEVGNKPQITPSGASTHTAANKTISTPINSIIRPS---WDNTQVQPE 119 Query: 153 -VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + S ++ + F+ F+EG SN++A AA +A+ Y NPLF++ GLGKTH Sbjct: 120 IAYRSNVNPKHTFNNFVEGKSNQLARAAASQVADNPGGAY-----NPLFLYGGTGLGKTH 174 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N + R+ N +VVY+ +E F+ A+++N + K R++D LLIDD+QF Sbjct: 175 LLHAVGNNIMARKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDIQFF 234 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 235 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE 294 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + ++ ++ + +EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 295 TRVAIL-----MKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAIT 349 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+ Sbjct: 350 IDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALA 408 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 KELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 460 >gi|157959831|ref|YP_001499865.1| chromosomal replication initiation protein [Shewanella pealeana ATCC 700345] gi|189083279|sp|A8GYE3|DNAA_SHEPA RecName: Full=Chromosomal replication initiator protein DnaA gi|157844831|gb|ABV85330.1| chromosomal replication initiator protein DnaA [Shewanella pealeana ATCC 700345] Length = 461 Score = 256 bits (653), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 158/484 (32%), Positives = 260/484 (53%), Gaps = 46/484 (9%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ +V + P F+ W++++YL I + Sbjct: 4 SLWQQCIARLQDELSAQQFSMWIRPLQAEMEGDTLV-IYAPNRFVLDWVRDKYLNIINQF 62 Query: 97 FQEEHSRIQG---VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E+ +I R A P V+ TA+ + P+ ++K P Sbjct: 63 FTEQMGSDAPSLRFDIGSRPSAKPVVQATAA---VRTSRPVTREVTK-----------PS 108 Query: 154 FGSP-------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 F +P ++ + F F+EG SN++ AA +AE Y NPLF Sbjct: 109 FNTPHAEPMANANHRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLF 163 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ GLGKTHLL A+ N IK PN +VVY+ +E F+ A+++N K R++ Sbjct: 164 LYGGTGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV 223 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D L IDD+QF K Q EF H N+LL+ Q++ +D+ P E++ ++ R++SR G Sbjct: 224 DALFIDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWG 283 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + E R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ Sbjct: 284 LTVAIEPPELETRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVI 338 Query: 380 FRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 +F PI T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+ Sbjct: 339 ANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRS 396 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQ+AM LSK +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L Sbjct: 397 VARPRQMAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLI 456 Query: 498 RLIS 501 R +S Sbjct: 457 RTLS 460 >gi|90413732|ref|ZP_01221720.1| chromosomal replication initiation protein [Photobacterium profundum 3TCK] gi|90325201|gb|EAS41698.1| chromosomal replication initiation protein [Photobacterium profundum 3TCK] Length = 474 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 161/482 (33%), Positives = 267/482 (55%), Gaps = 29/482 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L Sbjct: 4 SLWLQCLQRLQEELPATEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNNINRL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTA-SSPSIT---KLSPINTNI-SKSPIILGKQ 148 E I E+ R V +P + A ++P++T K SP + +P + Sbjct: 63 LNEFCGTDIPILRFEVGSRQVVVPPSQNIAPAAPAVTLVRKPSPATKILQDDAPSRSWEP 122 Query: 149 TISPV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 SPV + S ++ + F+ F+EG SN++ L A + +++ Y NPLF+ Sbjct: 123 APSPVQPESKSGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAY-----NPLFL 177 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL A+ NA R+PN RVVY+ +E F+ A+++N K R++D Sbjct: 178 YGGTGLGKTHLLHAVGNAIADRKPNARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 237 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G+ Sbjct: 238 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGL 297 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + E R +IL + + E+ + + +EV +A+ + ++ REL+GA N+++ Sbjct: 298 TVAIEPPELETRVAIL-----MKKAENHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIA 352 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 +F +T + E L L+ E K + I++IQ+ VA++Y I +D+LS RR R+V Sbjct: 353 NANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMSDMLSKRRSRSVA 411 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R Sbjct: 412 RPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIVQLREESHDIKEDYSNLIRT 471 Query: 500 IS 501 +S Sbjct: 472 LS 473 >gi|161505631|ref|YP_001572743.1| chromosomal replication initiation protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866978|gb|ABX23601.1| hypothetical protein SARI_03807 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 469 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 155/477 (32%), Positives = 261/477 (54%), Gaps = 28/477 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT----- 149 + G + L V V +T +P ++P T +++ + + Sbjct: 67 L----NTFCGADAPQLRFEVGTKPVTQTLKTPVHNIVAPAQTTMAQQRVAPAARPGWDNV 122 Query: 150 ---ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ G Sbjct: 123 PAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTG 177 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLID Sbjct: 178 LGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLID 237 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIE 297 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 PPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 352 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+ Sbjct: 353 GRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQM 411 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 468 >gi|307253756|ref|ZP_07535610.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258213|ref|ZP_07539956.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260451|ref|ZP_07542146.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306863240|gb|EFM95180.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867673|gb|EFM99518.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869854|gb|EFN01636.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 451 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 261/467 (55%), Gaps = 25/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I L Sbjct: 7 SLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKFLAEIVDL 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + + +R V + E SPS T ++ SK + + F + Sbjct: 66 ARF-LSKNDNLAVSIR-VGIKPAEHRPVSPSTT------SSNSKEEVPETNKN----FRT 113 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F++G SN++A AQ +A D+ G + NP ++ GLGKTHLL A+ Sbjct: 114 GLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGKTHLLHAV 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 170 GNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEA 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R +I Sbjct: 230 SQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAI 289 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 290 L-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAVR 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 345 EALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSLAKELTN 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 404 HSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 450 >gi|330835984|ref|YP_004410625.1| chromosomal replication initiator protein DnaA [Spirochaeta coccoides DSM 17374] gi|329747887|gb|AEC01243.1| chromosomal replication initiator protein DnaA [Spirochaeta coccoides DSM 17374] Length = 470 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 257/478 (53%), Gaps = 25/478 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N + RLK + P Y W R+++ + LSVP+ F+ + + Sbjct: 4 VEENYSVFWLETEKRLKETISPTDYTVWISRIRYEGAAAGKLMLSVPSQFVYDKVDREFR 63 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEK--TASSPSITKLSPINTNISKSPIILGKQ 148 IT + + VE +++ ++ PS + + + +S++ K+ Sbjct: 64 SQITDIISDLTGEHIKVEFVIKKISAPSPAAPFSGGDDEENETKKPHAEVSRTE----KE 119 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 I S L+ + F FI G ++ A +AA +I++ V NP ++ VGLG Sbjct: 120 RIIDYEASNLNPLYRFENFIAGENSAFAYSAAMAISKNPG-----VTYNPCLVYGGVGLG 174 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQ+I N ++ P L+VVY+TAE F F +I D K+ R + +LLIDD+ Sbjct: 175 KTHLLQSIGNYILENNPELKVVYVTAEMFTNEFIQSIGDKKTQAFKNKYRKVGVLLIDDI 234 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 FLQGK Q E H N L D+ KQ+V DRP SEL+ L R+RSR + G++V L Sbjct: 235 HFLQGKDSTQEELFHTFNDLYDTHKQLVFTCDRPISELKDLTSRLRSRFERGLNVDLLPP 294 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 +YE R +ILK + A + ++I ++VL ++R V T+ R+L+ + +L+ +++ + Sbjct: 295 NYETRMAILKRKSA-----EKNMSIPDDVLDFISRNVNTNVRDLEASLTKLI---AYSTL 346 Query: 388 LTAEIA-----DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 L EI ++L + + + + IE I R+V+ ++N+S D+ ++ +++++PR Sbjct: 347 LNKEITLDIAKEQLKAFPAHNAASPSLSIETIIRVVSDYFNVSTYDVKGKKKTKSLIQPR 406 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 Q+AMYL++I+ S EIG FG +DH+TV+HA ++VE M++TD L + V+ L R I Sbjct: 407 QIAMYLARILCEYSTSEIGSEFGGKDHSTVMHAYQRVEGMIKTDEALNQTVQKLIREI 464 >gi|238765484|ref|ZP_04626403.1| Chromosomal replication initiator protein dnaA [Yersinia kristensenii ATCC 33638] gi|238696308|gb|EEP89106.1| Chromosomal replication initiator protein dnaA [Yersinia kristensenii ATCC 33638] Length = 463 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 263/476 (55%), Gaps = 28/476 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSP--SITKLSPINTNISKSPIILGK 147 + R + G + VR+V V + S+P +T+ +P+ + SP Sbjct: 63 LNDFCGGEVPLLRFEVGSKPAVRAVHSHPVTASVSAPVAPVTRSAPVRPSWDSSP----- 117 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 118 AQPEHSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 172 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N I R+ N +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 173 GKTHLLHAVGNGIIARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 232 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 233 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 292 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 293 PELETRVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 347 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 348 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 406 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|165975458|ref|YP_001651051.1| chromosomal replication initiation protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875559|gb|ABY68607.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 494 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 161/474 (33%), Positives = 262/474 (55%), Gaps = 25/474 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 LE S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++ Sbjct: 43 SLEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKF 101 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L I L S+ + + +R V + E SPS T ++ SK + Sbjct: 102 LAEIVDL-ARFLSKNDNLAVSIR-VGIKPAEHRPVSPSTT------SSNSKEEV----PE 149 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + F + L+ F F++G SN++A AQ +A D+ G + NP ++ GLGK Sbjct: 150 TNKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGK 205 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+Q Sbjct: 206 THLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQ 265 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 266 FFSNKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPE 325 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F Sbjct: 326 LETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQ 380 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM Sbjct: 381 ITIDAVREALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMS 439 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 440 LAKELTNHSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 493 >gi|117918468|ref|YP_867660.1| chromosomal replication initiation protein [Shewanella sp. ANA-3] gi|166215332|sp|A0KR35|DNAA_SHESA RecName: Full=Chromosomal replication initiator protein DnaA gi|117610800|gb|ABK46254.1| chromosomal replication initiator protein DnaA [Shewanella sp. ANA-3] Length = 460 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 157/472 (33%), Positives = 257/472 (54%), Gaps = 23/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 F E+ ++ + PS +K +P P +K+ + T PV Sbjct: 63 FTEQMGN-DAPKLRFDIGSRPSAKKPEPAPVAAVRVP--NPQTKASVGTSFNTTEPVANA 119 Query: 156 ---SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHL Sbjct: 120 NHRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHL 174 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N IK P+ +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 175 LHAVGNGIIKNNPDAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFA 234 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E Sbjct: 235 NKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELET 294 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F PI T Sbjct: 295 RVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-T 348 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LS Sbjct: 349 IDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALS 407 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 408 KELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 459 >gi|317046239|ref|YP_004113887.1| chromosomal replication initiator protein DnaA [Pantoea sp. At-9b] gi|316947856|gb|ADU67331.1| chromosomal replication initiator protein DnaA [Pantoea sp. At-9b] Length = 466 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 161/473 (34%), Positives = 262/473 (55%), Gaps = 33/473 (6%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L E Sbjct: 11 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNSINGLLNEFCG- 68 Query: 104 IQGVEILVRSVALPSVEKTASS-PSITKLS-PINTNISKSPIILGKQTISPVFGS---PL 158 V +L V V + A+S P++ +S P +P QT+ P + S P Sbjct: 69 -ADVPLLRFEVGTRPVAQVATSQPAMASVSAPAPAQSRPAP----AQTLRPSWDSVPAPA 123 Query: 159 D--------SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 D +R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKT Sbjct: 124 DVTYRSNVNNRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKT 178 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 179 HLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQF 238 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 239 FANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPEL 298 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F + Sbjct: 299 ETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAI 353 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM + Sbjct: 354 TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAM 412 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 413 AKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|325577775|ref|ZP_08148050.1| ribosomal subunit interface protein [Haemophilus parainfluenzae ATCC 33392] gi|325160520|gb|EGC72646.1| ribosomal subunit interface protein [Haemophilus parainfluenzae ATCC 33392] Length = 455 Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/464 (34%), Positives = 258/464 (55%), Gaps = 27/464 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S+L++QV P ++W + L+ + + V L F+K+W++N YL I ++ Q Sbjct: 12 SQLQDQVSPMDLSTWLRPLQADVISQDQVVLYASNMFVKSWVENHYLAQIHQICQ----- 66 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINT---NISKSPIILGKQTISPV-FGSPLD 159 L ++ L + K P+ + P +T N +S + +++ P F S L+ Sbjct: 67 -----ALAKNPNLQIIVKEGVKPAPKAVEPASTQTNNHQESAVNFQQESDVPTKFESHLN 121 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + +F F+EG SN++A Q +A + G T NP F++ GLGKTHLL AI N Sbjct: 122 HKHLFENFVEGKSNQLARAVGQKLAL--APGEPTA--NPFFLYGGTGLGKTHLLHAIGNG 177 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF K Q Sbjct: 178 ILANKPNARVLYIHANNFMQHMVKAMRDNKMDQFKKFYRSLDALLVDDIQFFAEKEKTQE 237 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E R +IL Sbjct: 238 EFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLETRVAIL-- 295 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELL 397 + + E+ + + EEV +A+ + T+ REL+GA N++ F + + + L Sbjct: 296 ---LKKAEEHHMELPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGHIDIDFVRDTL 352 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 ++ E + + IE+IQ++VA++Y I DL S R R+V RPRQVAM L+K +T +S Sbjct: 353 KDILALQE-RLVTIENIQKVVAEYYRIKVADLKSKSRARSVTRPRQVAMALAKELTNKSL 411 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 PEIGR F +RDHTTVL+A R+V K E D +++++ L R +S Sbjct: 412 PEIGRAF-ERDHTTVLNACREVPKFREKDSSIQEDWANLIRTLS 454 >gi|307244802|ref|ZP_07526901.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251522|ref|ZP_07533429.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854247|gb|EFM86453.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860986|gb|EFM92992.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 451 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 261/467 (55%), Gaps = 25/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I L Sbjct: 7 SLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKFLAEIVDL 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + + +R V + E SPS T ++ SK + + F + Sbjct: 66 ARF-LSKNNDLAVSIR-VGIKPAEHRPVSPSTT------SSNSKEEVPETNKN----FRT 113 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F++G SN++A AQ +A D+ G + NP ++ GLGKTHLL A+ Sbjct: 114 GLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGKTHLLHAV 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 170 GNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEA 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R +I Sbjct: 230 SQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAI 289 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 290 L-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAVR 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 345 EALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSLAKELTN 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 404 HSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 450 >gi|322417546|ref|YP_004196769.1| chromosomal replication initiator protein DnaA [Geobacter sp. M18] gi|320123933|gb|ADW11493.1| chromosomal replication initiator protein DnaA [Geobacter sp. M18] Length = 465 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 151/474 (31%), Positives = 263/474 (55%), Gaps = 25/474 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+I+ + LK + Y +W + LKF + V L VP++F + WI ++YL I + Sbjct: 2 ENIWLEAQANLKQVLTEQTYTTWIEPLKFLGATADTVVLEVPSSFFQKWITDKYLSMIKE 61 Query: 96 LFQEEHSRIQGVEILV-----RSVALPSVEKTA-SSPSITKLSPINTNISKSPIILGKQT 149 + S+ +E V + A +K A ++ + K + + K ++ Sbjct: 62 ILSAITSKSYHIEFHVAEGKAETAAEQKPDKEAKATKAKDKEKEKDQDRDKEKEKDKEKD 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P L+ ++ F +F+ G SN+ A A+Q++A + Y NPLFI+ VGLGK Sbjct: 122 KKPEQVPNLNPKYTFESFVSGPSNQFAYAASQAVANKPATNY-----NPLFIYGGVGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI N + + P ++ Y ++E FM +++R ++ R +DLLLIDD+Q Sbjct: 177 THLVNAIGNQILAKNPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQ 236 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + Sbjct: 237 FMAGKEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPG 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E + +ILK + + +N+ ++V + +A T++ REL+G L+ +FA + Sbjct: 297 VETKVAILKKKSDMHA-----VNLPDDVALFLAEGATSNIRELEG---MLIRLEAFASLT 348 Query: 389 TAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 EI A E++ ++ +T+ + +E IQ+ VA H+ I ++L S++R++T+V PRQ+ Sbjct: 349 GQEITLSMAREVMKDII-VEKTRDISVEMIQKTVADHFRIKLSELKSDKRIKTLVVPRQI 407 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 A+Y+ + +T S+PEIG +FG +DH+T++H+V+K+EK L D LK VE +K+ Sbjct: 408 AIYICRELTKASYPEIGDKFGGKDHSTIIHSVKKIEKQLTADADLKATVEDIKK 461 >gi|50123359|ref|YP_052526.1| chromosomal replication initiation protein [Pectobacterium atrosepticum SCRI1043] gi|61212568|sp|Q6CYR4|DNAA_ERWCT RecName: Full=Chromosomal replication initiator protein DnaA gi|49613885|emb|CAG77337.1| chromosomal replication initiator protein [Pectobacterium atrosepticum SCRI1043] Length = 465 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 155/478 (32%), Positives = 265/478 (55%), Gaps = 30/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINVL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEK----TASSPSITKLSPINTNISKSPIIL 145 + R + G + LV++++ P+ + + +++P+ + SP+ Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQTISQPAQSHHNPVSVARQQPVRMAPVRPSWDNSPV-- 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 121 ---QAEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 172 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 173 GLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 232 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 233 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 292 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 293 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 347 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 348 TGRSITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 406 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|227328545|ref|ZP_03832569.1| chromosomal replication initiation protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 465 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/480 (33%), Positives = 268/480 (55%), Gaps = 34/480 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINVL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSP-SITKLSPINT-----NISKSPI 143 + R + G + LV++V+ P+ ++ +P S+ + P+ T + SP+ Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQAVSQPA--QSHHNPVSVARQQPVRTAPVRPSWDNSPV 120 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 121 -----QAEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYG 170 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 GLGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D L Sbjct: 171 GTGLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDAL 230 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 231 LIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 290 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ Sbjct: 291 AIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANA 345 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RP Sbjct: 346 NFTGRSITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARP 404 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 405 RQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|260774981|ref|ZP_05883881.1| chromosomal replication initiator protein dnaA [Vibrio coralliilyticus ATCC BAA-450] gi|260609071|gb|EEX35230.1| chromosomal replication initiator protein dnaA [Vibrio coralliilyticus ATCC BAA-450] Length = 459 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 158/449 (35%), Positives = 256/449 (57%), Gaps = 34/449 (7%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEE-HSRIQGV--EILVRSVALP--------- 117 N + L P F+ W+++RYL +I +L QE + I + E+ R V+ P Sbjct: 27 NTLTLFAPNRFVMDWVRDRYLNSINRLLQEYCGNDIPSLRFEVGSRPVSAPKPAPKRTPA 86 Query: 118 SVEKTASSPS-ITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFVFSTFIEGSSNRV 175 V +S+P+ + P++ +Q ++ + S ++ + F+ F+EG SN++ Sbjct: 87 DVAAESSAPAQLQARKPVHKTWDDD-----EQQVAEINHRSNVNIKHKFNNFVEGKSNQL 141 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 L AA+ +A+ Y NPLF++ GLGKTHLL A+ NA + +PN +VVY+ +E Sbjct: 142 GLAAARQVADNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSE 196 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q+ Sbjct: 197 RFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQI 256 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+ ++ R++SR G++V + + E R +IL + + ED ++++ + Sbjct: 257 ILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLAD 311 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIE 412 EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I+ Sbjct: 312 EVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTID 369 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTV Sbjct: 370 NIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTV 429 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 LHA RK+E++ E +K++ L R +S Sbjct: 430 LHACRKIEQLREESHDIKEDYSNLIRTLS 458 >gi|308095436|ref|ZP_05905896.2| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus Peru-466] gi|308087878|gb|EFO37573.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus Peru-466] Length = 443 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 158/457 (34%), Positives = 259/457 (56%), Gaps = 35/457 (7%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE-HSR 103 +L+ ++ ++ W + L+ + N + L P F+ W++++YL +IT+L QE + Sbjct: 3 QLQEELPATEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNSITRLLQEYCGND 61 Query: 104 IQGV--EILVRSVALP---------SVEKTASSPS-ITKLSPINTNISKSPIILGKQTIS 151 I + E+ R V+ P V +S+P+ + P++ P Q I+ Sbjct: 62 IPNLRFEVGSRPVSAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDDP-----QAIA 116 Query: 152 PV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S ++ + F F+EG SN++ L AA+ +++ Y NPLF++ GLGKT Sbjct: 117 AINHRSNMNPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 172 HLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQF 231 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 232 FANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPEL 291 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PI 387 E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F PI Sbjct: 292 ETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI 346 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 347 -TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMA 404 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 L+K +T S PEIG FG RDHTTVLHA RK+E++ E Sbjct: 405 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLRE 441 >gi|303250480|ref|ZP_07336677.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650468|gb|EFL80627.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 447 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 159/467 (34%), Positives = 261/467 (55%), Gaps = 25/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I L Sbjct: 3 SLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKFLAEIVDL 61 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + + +R V + E SPS T ++ SK + + F + Sbjct: 62 ARF-LSKNNDLAVSIR-VGIKPAEHRPVSPSTT------SSNSKEEVPETNKN----FRT 109 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F++G SN++A AQ +A D+ G + NP ++ GLGKTHLL A+ Sbjct: 110 GLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGKTHLLHAV 165 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 166 GNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEA 225 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R +I Sbjct: 226 SQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAI 285 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 286 L-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAVR 340 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 341 EALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSLAKELTN 399 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 400 HSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 446 >gi|1706462|sp|P49996|DNAA_VIBHA RecName: Full=Chromosomal replication initiator protein DnaA gi|1006569|gb|AAA78257.1| DnaA [Vibrio harveyi] Length = 468 Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 155/444 (34%), Positives = 248/444 (55%), Gaps = 24/444 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG---VEILVRSVALPSVEKTASSP 126 N + L P F+ W++++YL +I +L QE E+ R VA P T + Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDVPSLRFEVGSRRVAAPKPAPTRTPA 95 Query: 127 SITKLSPINTNI-SKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 + S + ++ P+ + V S ++ + F+ F+EG SN++ L AA Sbjct: 96 DVAAESSAPAQLQARKPVHKTWDDDAQVIADINHRSNVNPKHKFNNFVEGKSNQLGLAAA 155 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 + +++ Y NPLF++ GLGKTHLL A+ NA + PN +VVY+ +E F+ Sbjct: 156 RQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQD 210 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +D Sbjct: 211 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSD 270 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+ ++ R++SR G++V + + E R +IL + + ED ++++ +EV Sbjct: 271 RYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLADEVAFF 325 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ Sbjct: 326 IAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKT 383 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA R Sbjct: 384 VAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACR 443 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+E++ E +K++ L R +S Sbjct: 444 KIEQLREESHDIKEDYSNLIRTLS 467 >gi|332533700|ref|ZP_08409559.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] gi|332036864|gb|EGI73325.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] Length = 460 Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 263/466 (56%), Gaps = 29/466 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE----EH 101 L++++ ++ W + L+ S + + + P F+ W++ +YL I +L E E Sbjct: 13 LQDELPSQQFSMWVRPLQAEST-EDTLTIYAPNRFVLDWVREKYLNRINELLVEICGVEA 71 Query: 102 SRIQ---GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 +++ G + L+ + A P +E ++ + TK P + P++ + + S + Sbjct: 72 PKLRFDVGSKPLLNAQAAPVIETQSAPQASTKQQPR----EQKPVV--EPAPKSGYKSNI 125 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + F +F+EG SN++A AA +A+ + NP+FI+ GLGKTHLL A+ N Sbjct: 126 KENYTFDSFVEGKSNQLAKAAATQVADNPGSAF-----NPVFIYGGTGLGKTHLLHAVGN 180 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + +P+ ++VY+ +E F+ A+++N K R++D L+IDD+QF K Q Sbjct: 181 GIMANKPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQ 240 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E R +IL Sbjct: 241 EEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAIL- 299 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADE 395 + + + K+N+ EV +A+ + ++ REL+GA N+++ +F PI + + E Sbjct: 300 ----MKKAQQSKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPI-SIDFVKE 354 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + K + I++IQR VA++Y I +DLLS RR R++ RPRQVAM LSK +T Sbjct: 355 ALRDLLAL-QDKLVTIDNIQRTVAEYYRIRVSDLLSKRRSRSIARPRQVAMALSKELTNH 413 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK++ + + +K++ + L R +S Sbjct: 414 SLPEIGDAFGGRDHTTVLHACRKIKSLRDESHEIKEDYQNLIRTLS 459 >gi|269962691|ref|ZP_06177036.1| chromosomal replication initiation protein [Vibrio harveyi 1DA3] gi|269832614|gb|EEZ86728.1| chromosomal replication initiation protein [Vibrio harveyi 1DA3] Length = 468 Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/444 (35%), Positives = 251/444 (56%), Gaps = 24/444 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG---VEILVRSVALPSVEKTASSP 126 N + L P F+ W++++YL +I +L QE E+ R VA P T + Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDVPSLRFEVGSRPVAAPKPAPTRTPA 95 Query: 127 SITKLSPINTNI-SKSPIIL----GKQTISPV-FGSPLDSRFVFSTFIEGSSNRVALTAA 180 + S + ++ P+ Q I+ + S ++ + F+ F+EG SN++ L AA Sbjct: 96 DVAAESSAPAQLQARKPVHKTWDDDAQAIANINHRSNVNPKHKFNNFVEGKSNQLGLAAA 155 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 + +++ Y NPLF++ GLGKTHLL A+ NA + +PN +VVY+ +E F+ Sbjct: 156 RQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQD 210 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +D Sbjct: 211 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSD 270 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+ ++ R++SR G++V + + E R +IL + + ED ++++ +EV Sbjct: 271 RYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLADEVAFF 325 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ Sbjct: 326 IAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKT 383 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA R Sbjct: 384 VAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACR 443 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+E++ E +K++ L R +S Sbjct: 444 KIEQLREESHDIKEDYSNLIRTLS 467 >gi|54307245|ref|YP_128265.1| chromosomal replication initiation protein [Photobacterium profundum SS9] gi|61212603|sp|Q6LW50|DNAA_PHOPR RecName: Full=Chromosomal replication initiator protein DnaA gi|46911665|emb|CAG18463.1| Putative DnaA chromosomal replication initiator protein [Photobacterium profundum SS9] Length = 474 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 159/482 (32%), Positives = 264/482 (54%), Gaps = 29/482 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L Sbjct: 4 SLWLQCLQRLQEELPATEFSMWVRPLQ-AELKDNTLTLFAPNRFVLDWVRDKYLNNINRL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-----SPIILGKQ 148 E I E+ R V +PS + A + L+P ++ +P + Sbjct: 63 LNEFCGTDIPILRFEVGSRQVVVPSSQIIAPAAPAVTLAPRPLPATRILQDDAPSRSWEP 122 Query: 149 TISPV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 SPV + S ++ + F+ F+EG SN++ L A + +++ Y NPLF+ Sbjct: 123 APSPVQPESKSGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAY-----NPLFL 177 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL A+ NA R+PN RVVY+ +E F+ A+++N K R++D Sbjct: 178 YGGTGLGKTHLLHAVGNAIADRKPNARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 237 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G+ Sbjct: 238 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGL 297 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + E R +IL + + E+ + + +EV +A+ + ++ REL+GA N+++ Sbjct: 298 TVAIEPPELETRVAIL-----MKKAENHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIA 352 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 +F +T + E L L+ E K + I++IQ+ VA++Y I +D+LS RR R+V Sbjct: 353 NANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMSDMLSKRRSRSVA 411 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R Sbjct: 412 RPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIVQLREESHDIKEDYSNLIRT 471 Query: 500 IS 501 +S Sbjct: 472 LS 473 >gi|212632925|ref|YP_002309450.1| chromosomal replication initiation protein [Shewanella piezotolerans WP3] gi|226735846|sp|B8CH71|DNAA_SHEPW RecName: Full=Chromosomal replication initiator protein DnaA gi|212554409|gb|ACJ26863.1| Chromosomal replication initiator protein DnaA [Shewanella piezotolerans WP3] Length = 461 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/474 (32%), Positives = 260/474 (54%), Gaps = 26/474 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ +V + P F+ W++++YL I + Sbjct: 4 SLWQQCIARLQDELSAQQFSMWIRPLQAEMEGDTLV-IYAPNRFVLDWVRDKYLNIINQF 62 Query: 97 FQEEHSRIQG---VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT---I 150 F E+ +I R A P V+ TA+ + P + + P Q I Sbjct: 63 FTEQMGADAPKLRFDIGSRPSAKPVVQATAA----IRPKPAASKAVEKPTFNAPQAEPAI 118 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S ++ + F F+EG SN++ AA ++E Y NPLF++ GLGKT Sbjct: 119 TANHRSNINPTYQFDNFVEGKSNQLGKAAALQVSENPGGAY-----NPLFLYGGTGLGKT 173 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N IK +P+ +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 174 HLLHAVGNGIIKNKPDAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQF 233 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H N+LL+ Q++ +D+ P E++ ++ R++SR G++V + + Sbjct: 234 FANKDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPEL 293 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PI 387 E R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F PI Sbjct: 294 ETRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI 348 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+AM Sbjct: 349 -TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMA 406 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LSK +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 407 LSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 460 >gi|167854885|ref|ZP_02477661.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] gi|167853952|gb|EDS25190.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] Length = 444 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 258/467 (55%), Gaps = 28/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ + +V L F+ W+K+++L I L Sbjct: 3 SLWSDCLTHLQAKVSPTDYSTWLRPLQASATSSELV-LYAHNQFVATWVKDKFLGEIVTL 61 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + +++ +R V + E+ +S + T P ++T + S Sbjct: 62 ARS-LSKNEQLQVDMR-VGIKPAEQAVTSVTPTATPP-------------QETQATALRS 106 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L F F++G SN++A AQ +A + NP ++ GLGKTHLL AI Sbjct: 107 GLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESH----CNPFSLYGGTGLGKTHLLHAI 162 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +K+ PN RVVY+ +E F+ AI+ N N K R++D+L+IDD+QF K Sbjct: 163 GNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEA 222 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + +KQ++ +D P +E+++ RIRSRL GV+ + + E R +I Sbjct: 223 TQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVAI 282 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + ++E+V + + + T+ REL+GA N+ + +F +T + Sbjct: 283 L-----MKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAVR 337 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI DL S R R+V RPRQ+AM L+K +T Sbjct: 338 EALKDLIASYD-HLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTN 396 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA + + ++ +TD +++++ L R +S Sbjct: 397 HSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLS 443 >gi|156972777|ref|YP_001443684.1| chromosomal replication initiation protein [Vibrio harveyi ATCC BAA-1116] gi|166215368|sp|A7N1E9|DNAA_VIBHB RecName: Full=Chromosomal replication initiator protein DnaA gi|156524371|gb|ABU69457.1| hypothetical protein VIBHAR_00442 [Vibrio harveyi ATCC BAA-1116] Length = 468 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/444 (35%), Positives = 250/444 (56%), Gaps = 24/444 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG---VEILVRSVALPSVEKTASSP 126 N + L P F+ W++++YL +I +L QE E+ R VA P T + Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDVPSLRFEVGSRPVAAPKPAPTRTPA 95 Query: 127 SITKLSPINTNI-SKSPIIL----GKQTISPV-FGSPLDSRFVFSTFIEGSSNRVALTAA 180 + S + ++ P+ Q I+ + S ++ + F+ F+EG SN++ L AA Sbjct: 96 DVAAESSAPAQLQARKPVHKTWDDDAQAIADINHRSNVNPKHKFNNFVEGKSNQLGLAAA 155 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 + +++ Y NPLF++ GLGKTHLL A+ NA + PN +VVY+ +E F+ Sbjct: 156 RQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQD 210 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +D Sbjct: 211 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSD 270 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+ ++ R++SR G++V + + E R +IL + + ED ++++ +EV Sbjct: 271 RYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLADEVAFF 325 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ Sbjct: 326 IAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKT 383 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA R Sbjct: 384 VAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACR 443 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+E++ E +K++ L R +S Sbjct: 444 KIEQLREESHDIKEDYSNLIRTLS 467 >gi|53802863|ref|YP_115420.1| chromosomal replication initiator protein DnaA [Methylococcus capsulatus str. Bath] gi|61212517|sp|Q602N0|DNAA_METCA RecName: Full=Chromosomal replication initiator protein DnaA gi|53756624|gb|AAU90915.1| chromosomal replication initiator protein DnaA [Methylococcus capsulatus str. Bath] Length = 442 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 155/462 (33%), Positives = 255/462 (55%), Gaps = 34/462 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH-S 102 S+L+ ++ P + +W + L+ + L P F+ W+K ++ I ++ E++ Sbjct: 10 SKLEGELPPQQFNTWIRPLQAVEDGGEL-RLLAPNRFVLDWVKQHFIGKIEEVVSEQNRD 68 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 V + + S A + + +++P K +P + + L+S F Sbjct: 69 SAPNVVLEIGSRAAEAAQMRSANPP-RKTAPARKQVPNN----------------LNSAF 111 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +F F+EG SN++A A+ +A+ Y NPLFI+ VGLGKTHL+ AI N ++ Sbjct: 112 IFGNFVEGKSNQLAKAASLQVAQNVGRAY-----NPLFIYGGVGLGKTHLMHAIGNEILR 166 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 P +VYL +E F+ A++ N K+ R +D LLIDD+QF GK Q EF Sbjct: 167 GNPAANIVYLHSERFVSDMVKALQHNAINAFKEFYRTVDALLIDDIQFFAGKERSQEEFF 226 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+LL++ QVV DR P E++ L+ R++SR G+ V + D E R +IL Sbjct: 227 HTFNTLLENKHQVVLTCDRYPKEIKGLEERLKSRFGWGLPVAIEPPDLETRVAIL----- 281 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSH 399 +S+ + ++++ EV + + + ++ REL+GA +++ F PI T E A E L Sbjct: 282 MSKAQQSGIDLSPEVAFFIGKRIRSNIRELEGALRRVIANAQFTGRPI-TLEFAKEALRD 340 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L+ + + + +E+IQ+ V++++ I + DLLSN+R R++ RPRQ+AM LSK +T S PE Sbjct: 341 LIAL-QDRMINVENIQKTVSEYFKIRQADLLSNKRTRSLTRPRQIAMALSKELTSHSLPE 399 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG+ FG RDHTTVLHA RKV+++ E+D ++ L R++S Sbjct: 400 IGQMFGGRDHTTVLHACRKVQELKESDARFMEDFSNLLRILS 441 >gi|260553772|ref|ZP_05826042.1| chromosomal replication initiator protein DnaA [Acinetobacter sp. RUH2624] gi|260405076|gb|EEW98576.1| chromosomal replication initiator protein DnaA [Acinetobacter sp. RUH2624] Length = 465 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 268/475 (56%), Gaps = 25/475 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-EGILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPIN--TNISKSPIILGKQTIS 151 ++ R++ VEILV S L S E+ A++ + + +P++ T + + P + +S Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSNEQPATTTAALQSAPVSQPTKVKREPEPVANPAVS 120 Query: 152 PVFGSP--LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L+ +F FS F+EG SN++A T + + ++ + + NPLF++ GLG Sbjct: 121 SKTSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPTGLG 175 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 176 KTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDI 235 Query: 269 QFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 236 HLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPP 295 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFA 385 D E R IL + + E+ +++ + +A+ V + REL+GA N++V R A Sbjct: 296 DIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGA 350 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 PI + + L L T + +E+IQR+V++++ I +L+ +R R RPRQ+A Sbjct: 351 PIDLDVVRESLKDVLAIRART--ISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLA 408 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 409 MGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLL 463 >gi|262273130|ref|ZP_06050947.1| chromosomal replication initiator protein dnaA [Grimontia hollisae CIP 101886] gi|262222886|gb|EEY74194.1| chromosomal replication initiator protein dnaA [Grimontia hollisae CIP 101886] Length = 461 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/475 (33%), Positives = 266/475 (56%), Gaps = 28/475 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ + ++ W + L+ + N + L P F+ W++++YL +I +L Sbjct: 4 SLWLQCLQRLQEDLPATEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNSINQL 62 Query: 97 ---FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F + E+ + VA+ + ++P+ ++P++ + ++ + SPV Sbjct: 63 LNDFCGNDLPLLRFEVGSKPVAVAAPPSQPATPA--PVAPVSKPVGRT----WEPAPSPV 116 Query: 154 FG-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 S ++ + F+ F+EG SN++AL AA+ +A+ Y NPLF++ GLG Sbjct: 117 QSDVNHRSNVNPKHKFTNFVEGKSNQLALAAARQVADNPGAAY-----NPLFLYGGTGLG 171 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ NA R+ + RVVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 172 KTHLLHAVGNAISDRKADARVVYMHSERFVQDMVKALQNNQIEEFKRYYRSVDALLIDDI 231 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 232 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 291 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ED + + +EV +A+ + ++ REL+GA N+++ +F Sbjct: 292 ELETRVAIL-----MKKAEDHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 346 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQVAM Sbjct: 347 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADLLSKRRSRSVARPRQVAM 405 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LSK +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 406 ALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 460 >gi|227113116|ref|ZP_03826772.1| chromosomal replication initiation protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 465 Score = 254 bits (650), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 160/480 (33%), Positives = 269/480 (56%), Gaps = 34/480 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINVL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSP-SITKLSPINTNISKSPIILGKQ 148 + R + G + LV++V+ P+ ++ +P S+ + P+ +S + Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQAVSQPA--QSHHNPVSVARQQPV-----RSAPVRPSW 115 Query: 149 TISPV-----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 SPV + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 116 DNSPVQAEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYG 170 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 GLGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D L Sbjct: 171 GTGLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDAL 230 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 231 LIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 290 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ Sbjct: 291 AIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANA 345 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RP Sbjct: 346 NFTGRSITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARP 404 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 405 RQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|261819371|ref|YP_003257477.1| chromosomal replication initiation protein [Pectobacterium wasabiae WPP163] gi|261603384|gb|ACX85870.1| chromosomal replication initiator protein DnaA [Pectobacterium wasabiae WPP163] Length = 465 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 264/478 (55%), Gaps = 30/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELGDNTLALYAPNRFVLDWVRDKYLNNINIL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEK----TASSPSITKLSPINTNISKSPIIL 145 + R + G + LV++V+ P+ + + + +P+ + SP+ Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQAVSQPAQSHHNPVSVARQQPVRAAPVRPSWDNSPV-- 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 121 ---QAEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 172 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 173 GLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 232 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 233 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 292 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 293 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 347 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 348 TGRSITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 406 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|323496927|ref|ZP_08101955.1| chromosomal replication initiation protein [Vibrio sinaloensis DSM 21326] gi|323318001|gb|EGA70984.1| chromosomal replication initiation protein [Vibrio sinaloensis DSM 21326] Length = 468 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 158/449 (35%), Positives = 255/449 (56%), Gaps = 34/449 (7%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEE-HSRIQGV--EILVRSVALP--------- 117 N + L P F+ W++++YL +I +L QE + I + E+ R VA P Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDIPSLRFEVGSRPVAAPKPAPKRTPA 95 Query: 118 SVEKTASSPS-ITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFVFSTFIEGSSNRV 175 V +S+P+ + P++ Q I+ + S ++ + F+ F+EG SN++ Sbjct: 96 DVAAESSAPAQLQARKPVHKTWDDD-----AQAIADINHRSNVNPKHKFNNFVEGKSNQL 150 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 L AA+ +++ Y NPLF++ GLGKTHLL A+ NA + +PN +VVY+ +E Sbjct: 151 GLAAARQVSDNPGSAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSE 205 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q+ Sbjct: 206 RFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQI 265 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+ ++ R++SR G++V + + E R +IL + + ED ++++ + Sbjct: 266 ILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLAD 320 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIE 412 EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I+ Sbjct: 321 EVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTID 378 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTV Sbjct: 379 NIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTV 438 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 LHA RK+E++ E +K++ L R +S Sbjct: 439 LHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|148262086|ref|YP_001228792.1| chromosomal replication initiation protein [Geobacter uraniireducens Rf4] gi|189044596|sp|A5GDX1|DNAA_GEOUR RecName: Full=Chromosomal replication initiator protein DnaA gi|146395586|gb|ABQ24219.1| chromosomal replication initiator protein DnaA [Geobacter uraniireducens Rf4] Length = 449 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 147/472 (31%), Positives = 260/472 (55%), Gaps = 37/472 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ S +K + P Y +W + ++FH++ + + L VP+ F+K W+ +YL I + Sbjct: 2 EKVWLEAQSNIKKVLTPQTYNTWIKPIRFHTLTDDNLTLEVPSKFIKEWVTEKYLPMIVE 61 Query: 96 LFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSP---INTNISKSPIILGKQTIS 151 S +E + + L S +P I P N NI Sbjct: 62 AISSLTSVKYQIEFKITEKIPLESKPVDNFTPVIKDNEPSKETNKNID------------ 109 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ ++ F +F+ G+SN+ A A+Q++A + Y NPLFI+ VGLGKTH Sbjct: 110 --ITANLNPKYTFDSFVCGASNQFAHAASQAVASNPASNY-----NPLFIYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + ++ Y ++E FM + +R ++ R +D+LLIDD+QF+ Sbjct: 163 LLIAIGNHIKENNKKAKICYYSSEKFMNEMINCLRYKKMDEFRNKFRKMDILLIDDIQFM 222 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + D E Sbjct: 223 AGKEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPDIE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 + +ILK + ++ + + +V + +A + T++ REL+G L+ ++A + + Sbjct: 283 TKIAILKKKSDLNS-----ITLPNDVALFLASSATSNVRELEG---MLIRLGAYASLTGS 334 Query: 391 EI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 EI A ++L ++ +TK + +E IQ+ VA+H+ I ++L S++R++T V PRQ+A+ Sbjct: 335 EITLNMARDILKDII-VEKTKDITVEMIQKHVAEHFKIKVSELKSDKRLKTFVVPRQIAI 393 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 ++ + +T S+PEIG +FG +DH+T++H+V+K+EK + D+ +K VE LK+ Sbjct: 394 FICRELTKSSYPEIGEKFGGKDHSTIIHSVKKIEKQMANDLEIKNIVENLKK 445 >gi|91791370|ref|YP_561021.1| chromosomal replication initiation protein [Shewanella denitrificans OS217] gi|122969114|sp|Q12TC8|DNAA_SHEDO RecName: Full=Chromosomal replication initiator protein DnaA gi|91713372|gb|ABE53298.1| chromosomal replication initiator protein DnaA [Shewanella denitrificans OS217] Length = 462 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 256/478 (53%), Gaps = 33/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT----------NISKSPIILG 146 F E+ ++ + PS +P+ + + +T NI P+ Sbjct: 63 FTEQMGS-NAPKLRFDIGSRPSARTVQPAPAAPRPTTGHTQTKARVGTAFNIQAEPMANA 121 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 S ++ + F F+EG SN++ AA +AE Y NPLF++ G Sbjct: 122 NHR------SNINPTYQFDNFVEGKSNQLGKAAAMQVAENPGGAY-----NPLFLYGGTG 170 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ N IK PN +VVY+ +E F+ A+++N K R++D L ID Sbjct: 171 LGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFID 230 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + Sbjct: 231 DIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIE 290 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 + E R +IL + + ++ +N+ +EV VA+ + ++ REL+GA N+++ +F Sbjct: 291 PPELETRVAIL-----MRKAQESGINLPDEVAFFVAKRLRSNVRELEGALNRVIANANFT 345 Query: 386 --PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 PI T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQ Sbjct: 346 GRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQ 403 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAM LSK +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 404 VAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 461 >gi|254447382|ref|ZP_05060848.1| chromosomal replication initiator protein DnaA [gamma proteobacterium HTCC5015] gi|198262725|gb|EDY87004.1| chromosomal replication initiator protein DnaA [gamma proteobacterium HTCC5015] Length = 458 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 155/470 (32%), Positives = 259/470 (55%), Gaps = 17/470 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++++ S+L+N++ W + L V++ ++L P F++ W++ +Y I Sbjct: 2 TQAVWQSCLSQLENELTDHDMNVWIRPLH-AEVVNQTLNLMAPNPFVRDWVQEKYQTRIQ 60 Query: 95 KLFQEEHSRIQGVEILVRSV-ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + I + I + S A P+ A P +T S + + + + P Sbjct: 61 EILNSLQTEITQLRISIGSFSAKPA---PARDPVVTTTSQSSQSSAAPAPKPAEPPSQPP 117 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L++ F +F+EG SN++A AAQ +A+ GY NPLF++ VGLGKTHL+ Sbjct: 118 VNHNLEAGHTFDSFVEGKSNQMAKAAAQHVAQAPGDGY----YNPLFLYGGVGLGKTHLM 173 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ +A ++R P RVVYL +E F+ A++ N K R++D LLIDD+QF G Sbjct: 174 HAVGHAILERNPKARVVYLHSERFVGDMVKALQHNAIDEFKRLYRSVDALLIDDIQFFAG 233 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ DR P E+ L+ R++SR G++V + + E R Sbjct: 234 KERSQEEFFHTFNALLERKQQMILTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELEER 293 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +ILK++ I+ +++ ++V +A+ V ++ REL+GA +++ F +T + Sbjct: 294 VAILKSKAEIA-----NVDMKDDVAFFIAQKVRSNVRELEGAMKRVIVNSQFTGREITVD 348 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E L + + + + +E+IQR VA +YNI DLLS R R++ RPRQ+AM L+ Sbjct: 349 FAREQLRDQI-ASQDRLVTLENIQRTVADYYNIRVADLLSKSRSRSITRPRQIAMALAAE 407 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK++ + D + ++ + L R++S Sbjct: 408 LTNHSLPEIGNAFGGRDHTTVLHARRKIQALRAEDGRMNEDCQNLLRILS 457 >gi|315125112|ref|YP_004067115.1| DNA replication initiator [Pseudoalteromonas sp. SM9913] gi|315013625|gb|ADT66963.1| DNA replication initiator [Pseudoalteromonas sp. SM9913] Length = 476 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 156/470 (33%), Positives = 263/470 (55%), Gaps = 35/470 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L++++ ++ W + L+ S + + + P F+ W++ +YL I +L E I Sbjct: 27 LQDELPSQQFSMWVRPLQAEST-EDTLTIYAPNRFVLDWVREKYLNRINELLVE----IC 81 Query: 106 GVEI-----------LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 GVE L+ + A P VE + S+PS T+ + + P++ + + Sbjct: 82 GVEAPELRFDVGSKPLLNAQAAPVVE-SQSAPS-TQATAKQQPREQKPVV--EPAPKSGY 137 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S + + F +F+EG SN++A AA +A+ + NP+FI+ GLGKTHLL Sbjct: 138 KSNIKENYTFDSFVEGKSNQLAKAAATQVADNPGSAF-----NPVFIYGGTGLGKTHLLH 192 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + +P+ ++VY+ +E F+ A+++N K R++D L+IDD+QF K Sbjct: 193 AVGNGIMANKPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANK 252 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E R Sbjct: 253 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRV 312 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAE 391 +IL + + + K+N+ EV +A+ + ++ REL+GA N+++ +F PI + + Sbjct: 313 AIL-----MKKAQQSKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPI-SID 366 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ + K + I++IQR VA++Y I +DLLS RR R++ RPRQVAM LSK Sbjct: 367 FVKEALRDLLAL-QDKLVTIDNIQRTVAEYYRIRVSDLLSKRRSRSIARPRQVAMALSKE 425 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RKV+ + + +K++ + L R +S Sbjct: 426 LTNHSLPEIGDAFGGRDHTTVLHACRKVKSLRDESHEIKEDYQNLIRTLS 475 >gi|238787828|ref|ZP_04631625.1| Chromosomal replication initiator protein dnaA [Yersinia frederiksenii ATCC 33641] gi|238724171|gb|EEQ15814.1| Chromosomal replication initiator protein dnaA [Yersinia frederiksenii ATCC 33641] Length = 462 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 268/476 (56%), Gaps = 29/476 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSP--SITKLSPINTNISKSPIILGK 147 + R + G + VR+ + P V + S+P +T+ +P+ + SP+ + Sbjct: 63 LNDFCGAEVPLLRFEVGSKPTVRAQSHP-VTASVSAPVAPVTRSAPMRPSWDSSPV---Q 118 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 119 PELS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 171 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 172 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 292 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 346 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 347 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 405 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 406 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|205354575|ref|YP_002228376.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226735841|sp|B5RFY7|DNAA_SALG2 RecName: Full=Chromosomal replication initiator protein DnaA gi|205274356|emb|CAR39381.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629711|gb|EGE36054.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 466 Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 261/478 (54%), Gaps = 29/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELRDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQT 149 + G + L V V +T +P ++P T ++ + G Sbjct: 63 L----NTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDN 118 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 119 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 173 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 174 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 233 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 293 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 348 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 349 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 407 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|205359063|ref|ZP_02666990.2| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205338899|gb|EDZ25663.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|323132199|gb|ADX19629.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 470 Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 261/478 (54%), Gaps = 29/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQT 149 + G + L V V +T +P ++P T ++ + G Sbjct: 67 L----NTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPAQTTTAQPQRVAPAARSGWDN 122 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 123 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 177 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 178 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 237 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 297 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 352 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 353 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 411 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 469 >gi|126172258|ref|YP_001048407.1| chromosomal replication initiation protein [Shewanella baltica OS155] gi|152998556|ref|YP_001364237.1| chromosomal replication initiation protein [Shewanella baltica OS185] gi|160873127|ref|YP_001552443.1| chromosomal replication initiation protein [Shewanella baltica OS195] gi|217971217|ref|YP_002355968.1| chromosomal replication initiation protein [Shewanella baltica OS223] gi|304412705|ref|ZP_07394308.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS183] gi|307305830|ref|ZP_07585576.1| chromosomal replication initiator protein DnaA [Shewanella baltica BA175] gi|166215328|sp|A3CYH5|DNAA_SHEB5 RecName: Full=Chromosomal replication initiator protein DnaA gi|166215329|sp|A6WH85|DNAA_SHEB8 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083277|sp|A9KU72|DNAA_SHEB9 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777912|sp|B8E3P4|DNAA_SHEB2 RecName: Full=Chromosomal replication initiator protein DnaA gi|125995463|gb|ABN59538.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS155] gi|151363174|gb|ABS06174.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS185] gi|160858649|gb|ABX47183.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS195] gi|217496352|gb|ACK44545.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS223] gi|304348915|gb|EFM13330.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS183] gi|306911323|gb|EFN41749.1| chromosomal replication initiator protein DnaA [Shewanella baltica BA175] gi|315265352|gb|ADT92205.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS678] Length = 462 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 158/480 (32%), Positives = 255/480 (53%), Gaps = 37/480 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 F E+ ++ + PS +K + I NT K T+ F Sbjct: 63 FTEQMGS-DAPKLRFDIGSRPSAKKPSVPAPIAPTRVANTQT--------KATVGTTFNV 113 Query: 156 -----------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 S ++ + F F+EG SN++ AA +AE Y NPLF++ Sbjct: 114 QAEPMANANHRSNINPSYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGG 168 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N IK PN +VVY+ +E F+ A+++N K R++D L Sbjct: 169 TGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALF 228 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V Sbjct: 229 IDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVA 288 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ + Sbjct: 289 IEPPELETRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANAN 343 Query: 384 FA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 F PI T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RP Sbjct: 344 FTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARP 401 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAM LSK +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 402 RQVAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 461 >gi|62182326|ref|YP_218743.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|71151802|sp|Q57I00|DNAA_SALCH RecName: Full=Chromosomal replication initiator protein DnaA gi|62129959|gb|AAX67662.1| DNA replication initiator protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716817|gb|EFZ08388.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 466 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 261/478 (54%), Gaps = 29/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQT 149 + G + L V V +T +P ++P T ++ + G Sbjct: 63 L----NTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDN 118 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 119 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 173 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 174 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 233 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 293 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 348 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 349 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 407 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 MAMALAKELTNYSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|327395909|dbj|BAK13331.1| chromosomal replication initiator protein DnaA [Pantoea ananatis AJ13355] Length = 445 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/445 (34%), Positives = 248/445 (55%), Gaps = 26/445 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTA--SSPS 127 N + L P F+ W++++YL +I L E V +L V V++ A S P+ Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNSINALLNEFCG--ANVPLLRFEVGTRPVQQAAAVSQPA 70 Query: 128 ITKLS----PINTNISKSPIILGKQTISPV-----FGSPLDSRFVFSTFIEGSSNRVALT 178 + +S P+ + + I+ P + S +++R F F+EG SN++A Sbjct: 71 MASVSAPAAPVQNRPAPAQIVRPSWDNVPAPADVTYRSNVNNRHNFDNFVEGKSNQLARA 130 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA+ +A+ Y NPLF++ GLGKTHLL A+ N I R+PN +VVY+ +E F+ Sbjct: 131 AARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIIARKPNAKVVYMHSERFV 185 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ Sbjct: 186 QDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILT 245 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV Sbjct: 246 SDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVA 300 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ Sbjct: 301 FFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQK 359 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I DLLS RR R+V RPRQ+AM ++K +T S PEIG FG RDHTTVLHA Sbjct: 360 TVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKELTNHSLPEIGDAFGGRDHTTVLHAC 419 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+E++ E +K++ L R +S Sbjct: 420 RKIEQLREESHDIKEDFSNLIRTLS 444 >gi|224585637|ref|YP_002639436.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470165|gb|ACN47995.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 470 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 261/478 (54%), Gaps = 29/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQT 149 + G + L V V +T +P ++P T ++ + G Sbjct: 67 L----NTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDN 122 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 123 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 177 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 178 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 237 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 297 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 352 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 353 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 411 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 MAMALAKELTNYSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 469 >gi|190149270|ref|YP_001967795.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914401|gb|ACE60653.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 494 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 160/474 (33%), Positives = 262/474 (55%), Gaps = 25/474 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 LE S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++ Sbjct: 43 SLEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKF 101 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L I L S+ + + +R V + E SPS T ++ SK + Sbjct: 102 LAEIVDL-ARFLSKNNDLAVSIR-VGIKPAEHRPVSPSTT------SSNSKEEV----PE 149 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + F + L+ F F++G SN++A AQ +A D+ G + NP ++ GLGK Sbjct: 150 TNKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGK 205 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+Q Sbjct: 206 THLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQ 265 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 266 FFANKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPE 325 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F Sbjct: 326 LETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQ 380 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM Sbjct: 381 ITIDAVREALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMA 439 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 440 LAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 493 >gi|166709896|ref|ZP_02241103.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 442 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 165/482 (34%), Positives = 251/482 (52%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + VAL + + +PI Sbjct: 48 QVRERYLPRIRELLAYFAGNGE--------VALAVGSRPRAPEPAPAPIAATVAPQAAPI 99 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 +P F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 100 -------AP-FAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + +P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F ++T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRLITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|53729134|ref|ZP_00134100.2| COG0593: ATPase involved in DNA replication initiation [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249200|ref|ZP_07531197.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307262581|ref|ZP_07544212.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306858724|gb|EFM90783.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306872079|gb|EFN03792.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 451 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 158/467 (33%), Positives = 261/467 (55%), Gaps = 25/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I L Sbjct: 7 SLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKFLAEIVDL 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + + +R V + E SPS T ++ SK + + F + Sbjct: 66 ARF-LSKNNDLAVSIR-VGIKPAEHRPVSPSTT------SSNSKEEVPETNKN----FRT 113 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F++G SN++A AQ +A D+ G + NP ++ GLGKTHLL A+ Sbjct: 114 GLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGKTHLLHAV 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 170 GNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKEA 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R +I Sbjct: 230 SQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVAI 289 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 290 L-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAVR 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 345 EALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMALAKELTN 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 404 HSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 450 >gi|126207489|ref|YP_001052714.1| chromosomal replication initiation protein [Actinobacillus pleuropneumoniae L20] gi|126096281|gb|ABN73109.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 494 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 160/474 (33%), Positives = 262/474 (55%), Gaps = 25/474 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 LE S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++ Sbjct: 43 SLEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQ-ASFANGELTLYAQNQFVENWVKDKF 101 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L I L S+ + + +R V + E SPS T ++ SK + Sbjct: 102 LAEIVDL-ARFLSKNNDLAVSIR-VGIKPAEHRPVSPSTT------SSNSKEEV----PE 149 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + F + L+ F F++G SN++A AQ +A D+ G + NP ++ GLGK Sbjct: 150 TNKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVA--DNPGES--HCNPFSLYGGTGLGK 205 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+Q Sbjct: 206 THLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQ 265 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 266 FFANKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPE 325 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F Sbjct: 326 LETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQ 380 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ + + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM Sbjct: 381 ITIDAVREALKDLIASYD-HLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMA 439 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 440 LAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 493 >gi|119947308|ref|YP_944988.1| chromosomal replication initiator protein DnaA [Psychromonas ingrahamii 37] gi|166214694|sp|A1T0X4|DNAA_PSYIN RecName: Full=Chromosomal replication initiator protein DnaA gi|119865912|gb|ABM05389.1| chromosomal replication initiator protein DnaA [Psychromonas ingrahamii 37] Length = 458 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 258/471 (54%), Gaps = 23/471 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +I+ ++LK+++ +++W + L+ H+ + L P + W++N+Y+ TI Sbjct: 4 AIWQECLAQLKDELSAGDFSTWLRPLQ-ADFNHSTLSLYSPNKYTSEWVRNKYMATIEDK 62 Query: 97 FQE---EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 Q+ + + V+I + + SVEK + K P ++ P + Sbjct: 63 VQQLVNQENPNHSVKIRLMVGNVSSVEKKPA-----KQIPTQAPLTNQPWEGESKAHRVP 117 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L ++ F F+EG SN A+ Q IAE Y NPLF++A GLGKTHLL Sbjct: 118 HKSNLIKKYTFDNFVEGKSNNFAIATTQQIAENPGDVY-----NPLFLYAHPGLGKTHLL 172 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ NA + P +VVY+ +E F+ ++IR+N K+ ++D LLIDD+ F G Sbjct: 173 HAVGNAILAENPESKVVYIRSERFVQDMINSIRNNTIEQFKEYYASLDALLIDDIHFFAG 232 Query: 274 KLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K E NS+LD+ +QV+ +DR P E+E +D R+R+R G+S+P+ + E R Sbjct: 233 KDRSQEVLFQTFNSMLDAHQQVILTSDRFPKEIEGIDERLRTRFGWGLSIPIDPPELETR 292 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVT-TSGRELDGAFNQLVFRHSF-APILTA 390 +IL I++ E+ L + ++V +A+ +T T R L+GA + + F +T Sbjct: 293 VAIL-----ITKAEERGLKLPDDVAFFIAKRLTITDVRVLEGAIANISAKAQFTGQGITI 347 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ TK+ I++IQ++VA+HY I +D+ S RR RTV RPRQ+AM L+K Sbjct: 348 SLVQDALRDMLAV-HTKQTTIDNIQKIVAQHYRIKISDMSSKRRTRTVARPRQIAMALAK 406 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RKV+++ + ++++ ++L R +S Sbjct: 407 ELTQHSLPEIGEAFGGRDHTTVLHACRKVQELRRENNDIQEDYKILIRTLS 457 >gi|16762487|ref|NP_458104.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143975|ref|NP_807317.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|197265269|ref|ZP_03165343.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207859064|ref|YP_002245715.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213021809|ref|ZP_03336256.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052696|ref|ZP_03345574.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424952|ref|ZP_03357702.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581270|ref|ZP_03363096.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648784|ref|ZP_03378837.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289826405|ref|ZP_06545517.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21362471|sp|Q8Z2N6|DNAA_SALTI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735840|sp|B5QUQ0|DNAA_SALEP RecName: Full=Chromosomal replication initiator protein DnaA gi|25299855|pir||AI0957 chromosomal replication initiator protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504792|emb|CAD03157.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139611|gb|AAO71177.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|197243524|gb|EDY26144.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|206710867|emb|CAR35231.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 466 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 261/478 (54%), Gaps = 29/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQT 149 + G + L V V +T +P ++P T ++ + G Sbjct: 63 L----NTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDN 118 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 119 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 173 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 174 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 233 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 293 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 348 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 349 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 407 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|326386028|ref|ZP_08207652.1| chromosomal replication initiator protein DnaA [Novosphingobium nitrogenifigens DSM 19370] gi|326209253|gb|EGD60046.1| chromosomal replication initiator protein DnaA [Novosphingobium nitrogenifigens DSM 19370] Length = 506 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 163/493 (33%), Positives = 275/493 (55%), Gaps = 23/493 (4%) Query: 16 EIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVH 73 E A + D+ L++ + + +S LK +G +++ W + ++ S + Sbjct: 31 ESAARDGGAGEDQDALDLAAD--WADISQGLKKDLGSQLHSQWIKPIQVGSFCKETGTLD 88 Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV--RSVALPSVEKTASSPSITKL 131 L +PT F W+ +R+ + ++ ++ S ++ V I V R A+P + S + Sbjct: 89 LFLPTEFSANWVADRFSDRLSLAWKIARSEVRQVRIGVHPRRRAMPDLRMPGDSAPAPRA 148 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 + + T++ LD F+ F+ GS N +A+ AAQ +A ++ Sbjct: 149 AAPAPAPLPVDPL----TVATAHNG-LDPSLTFAEFVTGSGNVLAVNAAQRMAALE---- 199 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 T + +PL++ AS G GKTHLL AI +A +P R+ Y +AE FM F A+R + + Sbjct: 200 -TPQFSPLYLKASTGQGKTHLLHAIGHAYAAAKPGARIFYCSAERFMIEFVQAMRQHEMI 258 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K LR+ DLLL+DD+QF+ GK Q EF H +++LL + K++V AADR P L+ ++ Sbjct: 259 EFKARLRSFDLLLVDDIQFIIGKASTQEEFLHTIDALLSAGKRLVVAADRAPQALDGVEQ 318 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+ SRL G+ + D E+R IL++RL+ + ++V+ +ART+ + RE Sbjct: 319 RLLSRLSMGLVADIQPADIELRRKILQHRLS----RFAATAVPDDVIEFLARTINRNVRE 374 Query: 371 LDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 L G N+L+ + ++ ++A+E L+ ++N +++ I++IQR V + Y + R ++ Sbjct: 375 LVGGLNKLIAYAQLTGQPVSLQLAEEQLTDILNANR-RRITIDEIQRAVCQFYRVDRTEM 433 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 S RR R VVRPRQVAMYL+K++TPRS+PEIGR+FG RDH+TV+HAVR +E++ D + Sbjct: 434 ASKRRARAVVRPRQVAMYLAKVLTPRSYPEIGRKFGGRDHSTVIHAVRLIEELRTRDADM 493 Query: 490 KKEVELLKRLISE 502 +V L R + + Sbjct: 494 DGDVRTLLRQLED 506 >gi|332288919|ref|YP_004419771.1| chromosomal replication initiation protein [Gallibacterium anatis UMN179] gi|330431815|gb|AEC16874.1| chromosomal replication initiation protein [Gallibacterium anatis UMN179] Length = 455 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 255/461 (55%), Gaps = 26/461 (5%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L+++ +++W + L+ + + L P F++ W++++YL I ++ + Sbjct: 16 QLQDKTSEIDFSTWLRPLQ-ADISDTTMVLYAPNRFVRDWVQDKYLSQIEEIVRFLTENP 74 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 Q V + VR P E N +++ + + + F + L+ ++ F Sbjct: 75 QFV-VRVREGTRPVREAIQVEE--------NASVAVTEANAEQAQTTHKFKTNLNPKYEF 125 Query: 165 STFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++G SN++A AQ +AE + GY NPLF++ GLGKTHLL AI N +K Sbjct: 126 HNFVQGKSNQLARVVAQKVAEKIGDEGY-----NPLFLYGGTGLGKTHLLHAIGNGILKN 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCH 282 +PN RVVY+ +E F+ A++ K R++D LLIDD+QF GK Q EF H Sbjct: 181 KPNARVVYIHSERFVQELVKALKTETIEKFKKFYRSLDALLIDDIQFFAGKEGSQEEFFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 NSL + +Q++ +DR P E++ ++ R++SR G+SV + + E R +IL + Sbjct: 241 TFNSLFEGGRQIILTSDRYPKEIDKIEERLKSRFNWGLSVAIEPPELETRVAIL-----L 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHL 400 + E+ + + EEV + + + T+ REL+GA N++ +F PI T + E L + Sbjct: 296 KKAEESNIVLPEEVAFFIGQKLRTNVRELEGALNRVSANANFTGQPI-TIDFVRETLKDM 354 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + + + + +++IQR+VA+ Y I DL S + R+VVRPRQ+AM LSK +T S PEI Sbjct: 355 LAVHD-RSVTLDNIQRVVAERYRIKVADLKSKSKARSVVRPRQMAMALSKELTNHSLPEI 413 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 GR FGDRDHTTVLHA RK+ ++ ++D + ++ L R +S Sbjct: 414 GRAFGDRDHTTVLHACRKIAELRDSDNNISEDYSNLIRTLS 454 >gi|153948|gb|AAA02815.1| dnaA protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 466 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 261/478 (54%), Gaps = 29/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQT 149 + G + L V V +T +P ++P T ++ + G Sbjct: 63 L----NTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPAQTTTTQPQRVAPAARSGWDN 118 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 119 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 173 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 174 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 233 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 293 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 348 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 349 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 407 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|198245954|ref|YP_002217788.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226735839|sp|B5FN10|DNAA_SALDC RecName: Full=Chromosomal replication initiator protein DnaA gi|197940470|gb|ACH77803.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 466 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 261/478 (54%), Gaps = 29/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQT 149 + G + L V V +T +P ++P T ++ + G Sbjct: 63 L----NAFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDN 118 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 119 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 173 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 174 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 233 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 293 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 348 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 349 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 407 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|167041926|gb|ABZ06664.1| putative bacterial DnaA protein [uncultured marine microorganism HF4000_137B17] Length = 418 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 152/445 (34%), Positives = 251/445 (56%), Gaps = 46/445 (10%) Query: 68 LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS 127 ++ V L+ PT F++ WI +RY + + + + IQ +E + E S Sbjct: 8 FNHYVVLTAPTRFVRDWIVSRYADKMLDIIKTFKKSIQRIEFFIE-------ESKEKSDK 60 Query: 128 ITKLSPINTNISKSPIILGKQTISPVFGSPLD-SRF----VFSTFIEGSSNRVALTAAQS 182 I IS + S L+ +RF F F+ G SN +A TAA+ Sbjct: 61 ID--------------FRRDSQISSIENSLLNYNRFNLNNSFDNFMVGESNELAYTAARK 106 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 + SH NPLFI++ VG+GKTHLL AI + + + ++++++AE FM+ F Sbjct: 107 VCNQSSH------YNPLFIYSVVGMGKTHLLNAIG---LDIENSKQIMFISAERFMYHFI 157 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 +I+ N + KD R ++ +IDD+QF+ GK +Q EF H N+L++ Q+V A+DR Sbjct: 158 RSIKSNDMVKFKDFFRKANVFIIDDIQFVAGKEAMQEEFFHTFNALMERGSQIVVASDRS 217 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA-ISQKEDPKLNINEEVLMHV 360 PS L+ + RI+SRL GG+ + + D +R IL+++ I + + N+N+EV + Sbjct: 218 PSNLDRVQGRIKSRLSGGLVIDIQPPDLNLRIKILRSKFEDIKKNFNENYNLNDEVFKFL 277 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAE----IADELLSHLVNTGETKKMRIEDIQR 416 A +T+S RE+ GA N+++ +F+ I T +L +N + K + +E IQ Sbjct: 278 ATEITSSIREMVGALNRVL---AFSKINTKSPNIYECKRILKDFINDNK-KSINVESIQN 333 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 +VA ++N++ ++LS RR R++ RPRQ+AMYL+K T S PEIGR+F +RDHTTV+HAV Sbjct: 334 IVAVYFNLNIQEMLSPRRSRSLARPRQIAMYLAKKYTTNSLPEIGRKFSNRDHTTVIHAV 393 Query: 477 RKVEKMLETDITLKKEV-ELLKRLI 500 +K+ ++++ D +K + E++KRL+ Sbjct: 394 KKINELIKNDNEIKHNITEIIKRLL 418 >gi|219871632|ref|YP_002476007.1| chromosomal replication initiation protein [Haemophilus parasuis SH0165] gi|219691836|gb|ACL33059.1| chromosomal replication initiator protein [Haemophilus parasuis SH0165] Length = 444 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 260/467 (55%), Gaps = 28/467 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ + +V L F+ W+K+++L I L Sbjct: 3 SLWSDCLTHLQAKVSPTDYSTWLRPLQASATSSELV-LYAHNQFVATWVKDKFLGEIVTL 61 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + S+ + +++ +R P+ + ++T ++P T P ++T + S Sbjct: 62 ARS-LSKNEQLQVEMRVGIKPAKQ------AVTSVTPTAT----PP----QETQATALRS 106 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L F F++G SN++A AQ +A + NP ++ GLGKTHLL AI Sbjct: 107 GLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESH----CNPFSLYGGTGLGKTHLLHAI 162 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +K+ PN RVVY+ +E F+ AI+ N N K R++D+L+IDD+QF K Sbjct: 163 GNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKEA 222 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + +KQ++ +D P +E+++ RIRSRL GV+ + + E R +I Sbjct: 223 TQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVAI 282 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L + + E+ + ++E+V + + + T+ REL+GA N+ + +F +T + Sbjct: 283 L-----MKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAVR 337 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + IE+IQ+ VA++YNI DL S R R+V RPRQ+AM L+K +T Sbjct: 338 EALKDLIASYD-HLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELTN 396 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA + + ++ +TD +++++ L R +S Sbjct: 397 HSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLS 443 >gi|300719141|ref|YP_003743944.1| Chromosomal replication initiator protein [Erwinia billingiae Eb661] gi|299064977|emb|CAX62097.1| Chromosomal replication initiator protein [Erwinia billingiae Eb661] Length = 463 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 260/467 (55%), Gaps = 24/467 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS- 102 +RL++++ ++ W + L+ + N + L P F+ W++++YL I L + Sbjct: 11 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGT 69 Query: 103 -----RIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 R + G + + R ++ P + +S + P++T S + + + S Sbjct: 70 DVPLLRFEVGSKPVTRQISQPVMASAHASAPVQGSRPVHTRPSWDSMPAPAEL---SYRS 126 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 ++++ F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ Sbjct: 127 NVNTKHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAV 181 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 182 GNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 241 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +I Sbjct: 242 SQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAI 301 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 302 L-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVR 356 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K +T Sbjct: 357 EALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKELTN 415 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 HSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|16767123|ref|NP_462738.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415711|ref|YP_152786.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161616956|ref|YP_001590921.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167548872|ref|ZP_02342631.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992432|ref|ZP_02573530.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233393|ref|ZP_02658451.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235478|ref|ZP_02660536.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260377|ref|ZP_02682350.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464831|ref|ZP_02698723.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818302|ref|ZP_02830302.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442253|ref|YP_002043088.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448643|ref|YP_002047871.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470761|ref|ZP_03076745.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736495|ref|YP_002116782.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248955|ref|YP_002148776.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197364639|ref|YP_002144276.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200388152|ref|ZP_03214764.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928789|ref|ZP_03219988.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238913091|ref|ZP_04656928.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141364|sp|P35891|DNAA_SALTY RecName: Full=Chromosomal replication initiator protein DnaA gi|71151803|sp|Q5PKU6|DNAA_SALPA RecName: Full=Chromosomal replication initiator protein DnaA gi|189044603|sp|A9MX77|DNAA_SALPB RecName: Full=Chromosomal replication initiator protein DnaA gi|226735838|sp|B5EYX2|DNAA_SALA4 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735842|sp|B4TAU9|DNAA_SALHS RecName: Full=Chromosomal replication initiator protein DnaA gi|226735843|sp|B4SYA8|DNAA_SALNS RecName: Full=Chromosomal replication initiator protein DnaA gi|226735844|sp|B5BIL4|DNAA_SALPK RecName: Full=Chromosomal replication initiator protein DnaA gi|226735845|sp|B4TN07|DNAA_SALSV RecName: Full=Chromosomal replication initiator protein DnaA gi|16422412|gb|AAL22697.1| DNA replication initiator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129968|gb|AAV79474.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161366320|gb|ABX70088.1| hypothetical protein SPAB_04777 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194400916|gb|ACF61138.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406947|gb|ACF67166.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457125|gb|EDX45964.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711997|gb|ACF91218.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632396|gb|EDX50880.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096116|emb|CAR61712.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212658|gb|ACH50055.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291232|gb|EDY30584.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199605250|gb|EDZ03795.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322222|gb|EDZ07420.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325509|gb|EDZ13348.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329368|gb|EDZ16132.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332569|gb|EDZ19333.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344670|gb|EDZ31434.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350503|gb|EDZ37134.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261248979|emb|CBG26836.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996124|gb|ACY91009.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160371|emb|CBW19896.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914968|dbj|BAJ38942.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088259|emb|CBY98021.1| Chromosomal replication initiator protein dnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225556|gb|EFX50611.1| Chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617249|gb|EFY14154.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619063|gb|EFY15949.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625130|gb|EFY21958.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630181|gb|EFY26952.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634393|gb|EFY31127.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635278|gb|EFY31993.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642898|gb|EFY39482.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647622|gb|EFY44109.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650572|gb|EFY46979.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656402|gb|EFY52694.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661582|gb|EFY57805.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661663|gb|EFY57882.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668223|gb|EFY64381.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672848|gb|EFY68956.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674971|gb|EFY71057.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683661|gb|EFY79674.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687737|gb|EFY83706.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192048|gb|EFZ77283.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200530|gb|EFZ85608.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204956|gb|EFZ89941.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206699|gb|EFZ91656.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211771|gb|EFZ96604.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218633|gb|EGA03340.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220034|gb|EGA04504.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224804|gb|EGA09069.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232487|gb|EGA16589.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235262|gb|EGA19347.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241050|gb|EGA25087.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241400|gb|EGA25432.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248631|gb|EGA32561.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252070|gb|EGA35930.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258626|gb|EGA42289.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262343|gb|EGA45901.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268179|gb|EGA51655.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270593|gb|EGA54038.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332990688|gb|AEF09671.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 466 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 261/478 (54%), Gaps = 29/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQT 149 + G + L V V +T +P ++P T ++ + G Sbjct: 63 L----NTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPAQTTTAQPQRVAPAARSGWDN 118 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 119 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 173 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 174 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 233 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 293 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 348 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 349 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 407 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|28202301|gb|AAO34747.1| chromosomal replication initiator protein dnaA [Clostridium tetani E88] Length = 342 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 132/350 (37%), Positives = 217/350 (62%), Gaps = 18/350 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI Sbjct: 5 LNPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIG 59 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++ N++VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF+ GK Sbjct: 60 HYILQNNSNVKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERT 119 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +IL Sbjct: 120 QEEFFHTFNALHEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAIL 179 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 K + + LNI EV++++A + ++ REL+GA ++V +F+ + EI Sbjct: 180 KKKADVEH-----LNIPNEVMVYIATKIKSNIRELEGALIRIV---AFSSLTNKEISVDL 231 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L ++++ E+ ++ IE IQ +V+ ++N+ D S+RR R V PRQ+AMYL + + Sbjct: 232 ASEALKDIISSKESNQVTIELIQDIVSSYFNLRVEDFKSSRRTRNVAFPRQIAMYLCRKL 291 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S P+IG FG RDHTTV+H K+ L+ D +L+K V L I++ Sbjct: 292 TDNSLPKIGEEFGGRDHTTVIHGYEKISTALKKDDSLQKTVNELTSKINQ 341 >gi|253686410|ref|YP_003015600.1| chromosomal replication initiator protein DnaA [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645256|sp|C6DGH7|DNAA_PECCP RecName: Full=Chromosomal replication initiator protein DnaA gi|251752988|gb|ACT11064.1| chromosomal replication initiator protein DnaA [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 465 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 264/478 (55%), Gaps = 30/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL +++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLHDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINVL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSV----EKTASSPSITKLSPINTNISKSPIIL 145 + R + G + LV++++ P+ + +A+ + +P+ + SP Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQAISQPAQPHHKQVSAAPQQQVRSAPVRPSWDNSPA-- 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 121 ---QAEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 172 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 173 GLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 232 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 233 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 292 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 293 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 347 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 348 TGRSITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 406 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|323493781|ref|ZP_08098899.1| chromosomal replication initiation protein [Vibrio brasiliensis LMG 20546] gi|323311915|gb|EGA65061.1| chromosomal replication initiation protein [Vibrio brasiliensis LMG 20546] Length = 468 Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 156/449 (34%), Positives = 253/449 (56%), Gaps = 34/449 (7%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG---VEILVRSVALPS-------- 118 N + L P F+ W++++YL +I +L QE E+ R VA P+ Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDVPSLRFEVGSRPVAAPTPAPKRTPA 95 Query: 119 -VEKTASSPS-ITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFVFSTFIEGSSNRV 175 V +S+P+ + P++ + I+ + S ++ + F+ F+EG SN++ Sbjct: 96 DVAAESSAPAQLQARKPVHKTWDDD-----AEAIADINHRSNVNPKHKFTNFVEGKSNQL 150 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 L AA+ +++ Y NPLF++ GLGKTHLL A+ NA + +PN +VVY+ +E Sbjct: 151 GLAAARQVSDNPGSAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSE 205 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q+ Sbjct: 206 RFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQI 265 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+ ++ R++SR G++V + + E R +IL + + ED ++++ + Sbjct: 266 ILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLAD 320 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIE 412 EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I+ Sbjct: 321 EVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTID 378 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTV Sbjct: 379 NIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTV 438 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 LHA RK+E++ E +K++ L R +S Sbjct: 439 LHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|238783048|ref|ZP_04627075.1| Chromosomal replication initiator protein dnaA [Yersinia bercovieri ATCC 43970] gi|238716049|gb|EEQ08034.1| Chromosomal replication initiator protein dnaA [Yersinia bercovieri ATCC 43970] Length = 463 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 157/475 (33%), Positives = 262/475 (55%), Gaps = 26/475 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI-LVR--SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + G E+ L+R + P+V S P +S +++S + SP Sbjct: 63 LND----FCGSEVPLLRFEVGSKPAVRAAHSHPVTASVSAPVAPVTRSAPVRPSWDSSPA 118 Query: 154 -----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 119 QPEHSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 173 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 174 KTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 233 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 293 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 348 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 349 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 407 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|294138802|ref|YP_003554780.1| chromosomal replication initiator protein DnaA [Shewanella violacea DSS12] gi|293325271|dbj|BAJ00002.1| chromosomal replication initiator protein DnaA [Shewanella violacea DSS12] Length = 462 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 259/472 (54%), Gaps = 35/472 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 RL++++ ++ W + L+ + N + L P F+ W++++Y+ I + F E+ Sbjct: 11 GRLQDELSAQQFSMWIRPLQ-AEMDGNTLVLYAPNRFVLDWVRDKYINIINQFFTEQMGS 69 Query: 104 IQG---VEILVRSVALPSVEKT-ASSPSITKL------SPINTNISKSPIILG-KQTISP 152 +I + A ++ T A +P ++ + N N+ + I+ + I+P Sbjct: 70 DAPKLRFDIGSKPAAPRPIQATPAMAPPRVQMNTRPAKTTFNMNMPEPAIMANHRSNINP 129 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F F+EG SN++ AA +AE Y NPLF++ GLGKTHL Sbjct: 130 AYQ--------FENFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHL 176 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ NA IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 177 LHAVGNAIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFA 236 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ QV+ +D+ P E++ ++ R++SR G++V + + E Sbjct: 237 NKDRSQEEFFHTFNALLEGNHQVILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELET 296 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F PI T Sbjct: 297 RVAIL-----MRKAQESGVNLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-T 350 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LS Sbjct: 351 IDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALS 409 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 410 KELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 461 >gi|127510936|ref|YP_001092133.1| chromosomal replication initiation protein [Shewanella loihica PV-4] gi|166215330|sp|A3Q8S6|DNAA_SHELP RecName: Full=Chromosomal replication initiator protein DnaA gi|126636231|gb|ABO21874.1| chromosomal replication initiator protein DnaA [Shewanella loihica PV-4] Length = 459 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 159/480 (33%), Positives = 252/480 (52%), Gaps = 40/480 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++YL TI + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGETLV-LYAPNRFVLDWVRDKYLNTINQF 62 Query: 97 FQEE------------HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 F E+ SR + V A SPS + S P Sbjct: 63 FTEQMGSDAPKLRFDIGSRPASKPAAPAASTKSPVAPAAKSPSKPSFN------SNEPAA 116 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 S ++ + F F+EG SN++ AA ++E Y NPLF++ Sbjct: 117 TANHR------SNMNPTYQFDNFVEGKSNQLGKAAALQVSENPGGAY-----NPLFLYGG 165 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N IK PN +VVY+ +E F+ A+++N K R++D L Sbjct: 166 TGLGKTHLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALF 225 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ QV+ +DR P E++ ++ R++SR G++V Sbjct: 226 IDDIQFFANKDRSQEEFFHTFNALLEGNHQVILTSDRYPKEIDGVEDRLKSRFGWGLTVA 285 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ + Sbjct: 286 IEPPELETRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANAN 340 Query: 384 FA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 F PI T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RP Sbjct: 341 FTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARP 398 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AM LSK +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 399 RQMAMALSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 458 >gi|123444342|ref|YP_001008307.1| chromosomal replication initiation protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163521|ref|YP_004300098.1| chromosomal replication initiation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166215369|sp|A1JT80|DNAA_YERE8 RecName: Full=Chromosomal replication initiator protein DnaA gi|122091303|emb|CAL14189.1| chromosomal replication initiator protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318608025|emb|CBY29523.1| chromosomal replication initiator protein DNAA [Yersinia enterocolitica subsp. palearctica Y11] gi|325667751|gb|ADZ44395.1| chromosomal replication initiation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861746|emb|CBX71920.1| chromosomal replication initiator protein dnaA [Yersinia enterocolitica W22703] Length = 462 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 267/476 (56%), Gaps = 29/476 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSP--SITKLSPINTNISKSPIILGK 147 + R + G + VR+ + P V + S+P +T+ +P+ + SP + Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAVRAHSHP-VTASVSAPVAPVTRSAPVRPSWDSSP---AQ 118 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 119 PELS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 171 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 172 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 292 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 346 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 347 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 405 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 406 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|238797845|ref|ZP_04641337.1| Chromosomal replication initiator protein dnaA [Yersinia mollaretii ATCC 43969] gi|238718261|gb|EEQ10085.1| Chromosomal replication initiator protein dnaA [Yersinia mollaretii ATCC 43969] Length = 463 Score = 253 bits (646), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 157/475 (33%), Positives = 262/475 (55%), Gaps = 26/475 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI-LVR--SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + G E+ L+R + P+V S P +S +++S + SP Sbjct: 63 LND----FCGSEVPLLRFEVGSKPAVRAAHSHPVTASVSAPVAPVTRSAPVRPSWDSSPA 118 Query: 154 -----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 119 QPEHSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 173 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 174 KTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 233 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 293 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 ELETRVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 348 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 349 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAM 407 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|261250639|ref|ZP_05943214.1| chromosomal replication initiator protein dnaA [Vibrio orientalis CIP 102891] gi|260939208|gb|EEX95195.1| chromosomal replication initiator protein dnaA [Vibrio orientalis CIP 102891] Length = 459 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 159/474 (33%), Positives = 263/474 (55%), Gaps = 35/474 (7%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I +L QE Sbjct: 3 QLQEELPATEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGND 61 Query: 105 QG---VEILVRSVALP---------SVEKTASSPS-ITKLSPINTNISKSPIILGKQTIS 151 E+ R V P V +S+P+ + P++ Q I+ Sbjct: 62 VPSLRFEVGSRPVVAPKPAPKRTPADVAAESSAPAQLQARKPVHKTWDDD-----AQAIA 116 Query: 152 PV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ GLGKT Sbjct: 117 DINHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGSAY-----NPLFLYGGTGLGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 172 HLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQF 231 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 232 FANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPEL 291 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PI 387 E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F PI Sbjct: 292 ETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI 346 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 347 -TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMA 404 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 405 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 458 >gi|88860616|ref|ZP_01135253.1| DNA replication initiator protein [Pseudoalteromonas tunicata D2] gi|88817211|gb|EAR27029.1| DNA replication initiator protein [Pseudoalteromonas tunicata D2] Length = 460 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 158/471 (33%), Positives = 259/471 (54%), Gaps = 39/471 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L++++ ++ W + L+ S + + + P F+ W++ +YL I +L E I Sbjct: 13 LQDELPSQQFSMWVRPLQAEST-EDTLTIYAPNRFVLDWVREKYLNRINELLVE----IC 67 Query: 106 GVEILVRSVALPSVE-KTASSPSITKLSPINTNISKSPI-------ILGKQTISPVFG-- 155 G E P++ S P + K +P + +++P + Q + P Sbjct: 68 GNET-------PTLRFDVGSKPVLNKPAPAVVSEAQNPPANKTRAEVSSPQQVEPALKNA 120 Query: 156 --SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S + + F +F+EG SN++A AA +A D+ G NP+FI+ GLGKTHLL Sbjct: 121 HKSNIKETYTFDSFVEGKSNQLAKAAASQVA--DNPG---TAFNPVFIYGGTGLGKTHLL 175 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +PN ++ Y+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 176 HAVGNGILANKPNAKIAYMHSERFVQDMVRALQNNAIEEFKRYYRSVDALLIDDIQFFAN 235 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E R Sbjct: 236 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETR 295 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTA 390 +IL + + + K+ + EEV +A+ + ++ REL+GA N+++ +F PI T Sbjct: 296 VAIL-----MKKAQQSKIKLPEEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TI 349 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ + K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK Sbjct: 350 DFVKEALRDLLAL-QDKLVTIDNIQRTVAEYYRIRVSDLLSKRRSRSVARPRQVAMALSK 408 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK++ + E +K++ + L R +S Sbjct: 409 ELTNHSLPEIGDAFGGRDHTTVLHACRKIKSLREETHEIKEDYQNLIRTLS 459 >gi|313902784|ref|ZP_07836181.1| chromosomal replication initiator protein DnaA [Thermaerobacter subterraneus DSM 13965] gi|313466904|gb|EFR62421.1| chromosomal replication initiator protein DnaA [Thermaerobacter subterraneus DSM 13965] Length = 460 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 156/451 (34%), Positives = 247/451 (54%), Gaps = 24/451 (5%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +W + + S+ + L+VP F + W+ LE + + R+ G ++ + V Sbjct: 26 YEAWLRNTRPLSLEDGRLVLAVPNQFARDWV----LERCSTAIVDSLRRVLGHDVRLEVV 81 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 P A + T + + P + PL+ ++ F TF+ GS NR Sbjct: 82 VEPQPAPAAGQVAATSEAALAPGTPAGPAADAGSSWR-TLSQPLNPKYTFETFVTGSGNR 140 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A AA ++AE + Y NPLFI+ VGLGKTHL+QA+A+ +++ + RV Y++ Sbjct: 141 LAHAAALAVAEAPARTY-----NPLFIYGGVGLGKTHLMQAVAHHVLRKHGS-RVAYVSC 194 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F +AIRD L ++ RN+D+LL+DD+QFL GK Q EF H N+L ++ +Q Sbjct: 195 ETFTNEMINAIRDGKTLEFRNRYRNVDVLLVDDIQFLAGKESTQEEFFHTFNALHEANRQ 254 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V ++DRPP E+ +L+ R+RSR + G+ + D+E R +IL+ + + KL + Sbjct: 255 IVISSDRPPKEIPTLEERLRSRFEWGLISDIQPPDFETRVAILRKKAQLE-----KLRVP 309 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVNTGETKKM 409 ++V+ +A + T+ REL+GA +LV +FA + EI A E+L ++ K+ Sbjct: 310 DDVIAFIAERIDTNIRELEGALIRLV---AFASLTNHEIDLDLAAEVLKDILPPPRANKV 366 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I IQ +VA++Y + DL + RR R + PRQVAMYL + +T S P IG FG RDH Sbjct: 367 TIARIQEVVAEYYGVKVRDLKARRRTRAIAFPRQVAMYLCRELTEASLPRIGEEFGGRDH 426 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TTVLHA K+ + + D L ++V+ L LI Sbjct: 427 TTVLHAYEKISQDVRNDPQLGRQVKELMELI 457 >gi|220927460|ref|YP_002504369.1| chromosomal replication initiation protein [Clostridium cellulolyticum H10] gi|254777895|sp|B8I3R2|DNAA_CLOCE RecName: Full=Chromosomal replication initiator protein DnaA gi|219997788|gb|ACL74389.1| chromosomal replication initiator protein DnaA [Clostridium cellulolyticum H10] Length = 440 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 149/473 (31%), Positives = 254/473 (53%), Gaps = 37/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V I+ LK ++ + +W ++ S+ N + L VP +F K ++ RY Sbjct: 1 MNVQLNEIWNRTLELLKGEMTEISFNTWILTIEPISIDSNTITLGVPADFNKGILEARYS 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I ++ R + + PS T + P+ ++ + Sbjct: 61 YLIKNALRQISHRDYNIYFAI--------------PSQTPVKPVAQEYTEDSNM------ 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+ NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 101 -----SFLNPKYTFDTFVIGNGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 150 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + + P L+V+Y+++E F +AIRD+ + RNID+LLIDD+QF Sbjct: 151 HLMHAIGHFVLSQNPALKVLYVSSEKFTNELINAIRDDKNEEFRYKYRNIDVLLIDDIQF 210 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK + EF H N+L ++ KQ++ ++D+PP E+ +L+ R+RSR + G+ + D Sbjct: 211 IGGKERTEEEFFHTFNALYEANKQIIISSDKPPKEIPTLEDRLRSRFEWGLIADIAPPDL 270 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL+ + + L++ ++V++ +A V ++ REL+GA N+++ + I+ Sbjct: 271 ETRIAILRKKAQLEN-----LDVPDDVMVFIADKVASNIRELEGALNRVIAYSTLTENII 325 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A E L ++N + + + IQ VA+++++ +DL S RR R V PRQ+AMYL Sbjct: 326 NVDMAVEALKDMLNNSKAIIINSKTIQEAVARYFHLKTDDLKSKRRSRDVSFPRQIAMYL 385 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT S P+IG FG RDHTTV+HA K+ L LK+ VE +K+ I+ Sbjct: 386 CRDMTDMSLPKIGDEFGGRDHTTVIHACEKINNDLNNSTELKRTVEEIKKNIT 438 >gi|188535562|ref|YP_001909359.1| Chromosomal replication initiator protein [Erwinia tasmaniensis Et1/99] gi|226735811|sp|B2VCE3|DNAA_ERWT9 RecName: Full=Chromosomal replication initiator protein DnaA gi|188030604|emb|CAO98499.1| Chromosomal replication initiator protein [Erwinia tasmaniensis Et1/99] Length = 463 Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 263/469 (56%), Gaps = 28/469 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS- 102 +RL++++ ++ W + L+ + N + L P F+ W++++YL I L E Sbjct: 11 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNNINALLNEFCGA 69 Query: 103 -----RIQ-GVEILVRSVALP-SVEKTASSPSI-TKLSPINTNISKSPIILGKQTISPVF 154 R + G + + ++++ P V AS+P + ++ +P + P + + Sbjct: 70 NVPLLRFEVGSKPVAQAISQPVMVSAHASAPGVVSRPAPTRPSWDNVPAL-----AELSY 124 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++++ F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 125 RSNVNTKHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLH 179 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 180 AVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 239 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 240 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRV 299 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 300 AIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 354 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K + Sbjct: 355 VREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKEL 413 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 414 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|170724371|ref|YP_001758397.1| chromosomal replication initiation protein [Shewanella woodyi ATCC 51908] gi|226735847|sp|B1KCX3|DNAA_SHEWM RecName: Full=Chromosomal replication initiator protein DnaA gi|169809718|gb|ACA84302.1| chromosomal replication initiator protein DnaA [Shewanella woodyi ATCC 51908] Length = 462 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 257/480 (53%), Gaps = 37/480 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMDGDTLV-LYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQG---VEILVRSVALPSVEKTA--------SSPSITKLSPINTNISKSPIIL 145 F E+ +I R A ++ TA SSP ++ S N N + Sbjct: 63 FTEQMGSDAPKLRFDIGSRPSAPKPIQATAAVVKPKLESSPQKSQTS-FNVNAPEPAATA 121 Query: 146 G-KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + I+P + F F+EG SN++ AA +AE Y NPLF++ Sbjct: 122 NHRSNINPTYQ--------FENFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGG 168 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N IK +PN +VVY+ +E F+ A+++N K R++D L Sbjct: 169 TGLGKTHLLHAVGNGIIKNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALF 228 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V Sbjct: 229 IDDIQFFANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVA 288 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ + Sbjct: 289 IEPPELETRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANAN 343 Query: 384 FA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 F PI T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RP Sbjct: 344 FTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARP 401 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAM LSK +T S PEIG FG RDHTTVLHA RK+ ++ E K++ L R +S Sbjct: 402 RQVAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDTKEDYANLIRTLS 461 >gi|15640044|ref|NP_062596.1| chromosomal replication initiation protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147674057|ref|YP_001218400.1| chromosomal replication initiation protein [Vibrio cholerae O395] gi|153212955|ref|ZP_01948549.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 1587] gi|153802489|ref|ZP_01957075.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae MZO-3] gi|153819845|ref|ZP_01972512.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae NCTC 8457] gi|153830821|ref|ZP_01983488.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 623-39] gi|227080249|ref|YP_002808800.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae M66-2] gi|254225544|ref|ZP_04919153.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae V51] gi|254291127|ref|ZP_04961924.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae AM-19226] gi|254851577|ref|ZP_05240927.1| chromosomal replication initiation protein [Vibrio cholerae MO10] gi|297581954|ref|ZP_06943874.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae RC385] gi|298501197|ref|ZP_07010996.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MAK 757] gi|9654403|gb|AAF93190.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|124116181|gb|EAY35001.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 1587] gi|124121959|gb|EAY40702.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae MZO-3] gi|125621864|gb|EAZ50189.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae V51] gi|126509606|gb|EAZ72200.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae NCTC 8457] gi|146315940|gb|ABQ20479.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O395] gi|148873705|gb|EDL71840.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 623-39] gi|150422972|gb|EDN14922.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae AM-19226] gi|227008137|gb|ACP04349.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae M66-2] gi|227011985|gb|ACP08195.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O395] gi|254847282|gb|EET25696.1| chromosomal replication initiation protein [Vibrio cholerae MO10] gi|297533821|gb|EFH72662.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae RC385] gi|297540069|gb|EFH76131.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MAK 757] Length = 472 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 161/484 (33%), Positives = 268/484 (55%), Gaps = 40/484 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L Sbjct: 9 SLWLQCLQRLQEELPAAEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNNINRL 67 Query: 97 FQE-EHSRIQGV--EILVRSVALP---------SVEKTASSPS-ITKLSPINT---NISK 140 E + + + E+ R V P V +S+P+ + + PI+ + S Sbjct: 68 LMEFSGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSA 127 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + I + ++P + F+ F+EG SN++ L AA+ +++ Y NPLF Sbjct: 128 AADITHRSNVNP--------KHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLF 174 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++ Sbjct: 175 LYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV 234 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G Sbjct: 235 DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWG 294 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ Sbjct: 295 LTVAIEPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVI 349 Query: 380 FRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 +F PI T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+ Sbjct: 350 ANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRS 407 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L Sbjct: 408 VARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLI 467 Query: 498 RLIS 501 R +S Sbjct: 468 RTLS 471 >gi|192359033|ref|YP_001980525.1| chromosomal replication initiation protein [Cellvibrio japonicus Ueda107] gi|190685198|gb|ACE82876.1| chromosomal replication initiator protein DnaA [Cellvibrio japonicus Ueda107] Length = 534 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 137/346 (39%), Positives = 212/346 (61%), Gaps = 13/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S F+TF+EG SN++ L AA+ +AE Y NPLFI+ VGLGKTHL+QA+ Sbjct: 199 LNSACTFATFVEGKSNQLGLAAARQVAENPGGAY-----NPLFIYGGVGLGKTHLMQAVG 253 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NA + R PN +VVYL +E F+ A++ N + K R++D LLIDD+QF GK Sbjct: 254 NAMVARNPNAKVVYLHSERFVADMVKALQLNAINDFKRYYRSMDALLIDDIQFFAGKERS 313 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H NSLL+ +Q++ DR P E+ L+ R++SR G++V + + E R +IL Sbjct: 314 QEEFFHTFNSLLEGGRQIILTCDRFPKEINGLEERLKSRFGWGLTVAVEPPELETRVAIL 373 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 I + E +++ E +A+ + + R+L+GA +++ +F + E+ E Sbjct: 374 -----IKKAEQANIDLPHEAAFFIAQRIRANVRDLEGALKRVIASANFTGRSIDVELVRE 428 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + K++ I++IQR+V ++Y I ND++S RR R+V RPRQVAM L+K +T Sbjct: 429 ALKDLLAL-QDKQVGIDNIQRVVCEYYKIKMNDMISKRRSRSVARPRQVAMALAKELTNH 487 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK++++ E ++++++ L R ++ Sbjct: 488 SLPEIGEAFGGRDHTTVLHACRKIKELQEETADIREDMKNLLRSLT 533 >gi|238754004|ref|ZP_04615363.1| Chromosomal replication initiator protein dnaA [Yersinia ruckeri ATCC 29473] gi|238707756|gb|EEQ00115.1| Chromosomal replication initiator protein dnaA [Yersinia ruckeri ATCC 29473] Length = 463 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 155/476 (32%), Positives = 266/476 (55%), Gaps = 28/476 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSP--SITKLSPINTNISKSPIILGK 147 + R + G + +V+ + P + S+P + + +P+ + SP+ + Sbjct: 63 LNDFCGTNVPLLRFEVGSKPVVQRMNQPVTAASVSAPVVPVIRSAPMRPSWDSSPV---Q 119 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 120 PELS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 172 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 173 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 232 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 233 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 292 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 293 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 347 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 348 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 406 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|84621658|ref|YP_449030.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574271|ref|YP_001911200.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|123725613|sp|Q2P9M1|DNAA_XANOM RecName: Full=Chromosomal replication initiator protein DnaA gi|226735864|sp|B2SUW3|DNAA_XANOP RecName: Full=Chromosomal replication initiator protein DnaA gi|84365598|dbj|BAE66756.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188518723|gb|ACD56668.1| chromosomal replication initiator protein DnaA [Xanthomonas oryzae pv. oryzae PXO99A] Length = 442 Score = 253 bits (645), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 165/482 (34%), Positives = 250/482 (51%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + VAL + + +PI Sbjct: 48 QVRERYLPRIRELLAYFAGNGE--------VALAVGSRPRAPEPAPAPVAATIAPQAAPI 99 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 +P F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 100 -------AP-FAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + +P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|58579624|ref|YP_198640.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|71151811|sp|Q5H715|DNAA_XANOR RecName: Full=Chromosomal replication initiator protein DnaA gi|58424218|gb|AAW73255.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 443 Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 165/482 (34%), Positives = 250/482 (51%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 2 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 48 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + VAL + + +PI Sbjct: 49 QVRERYLPRIRELLAYFAGNGE--------VALAVGSRPRAPEPAPAPVAATIAPQAAPI 100 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 +P F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 101 -------AP-FAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 147 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + +P +V+YL +E F A++D K + ID Sbjct: 148 GSTGLGKTHLMFAAGNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 207 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 208 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 267 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 268 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 322 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 323 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 381 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 382 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 441 Query: 501 SE 502 SE Sbjct: 442 SE 443 >gi|262367726|gb|ACY64283.1| chromosomal replication initiator protein [Yersinia pestis D182038] Length = 462 Score = 253 bits (645), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 156/479 (32%), Positives = 265/479 (55%), Gaps = 35/479 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALPS----------VEKTASSP--SITKLSPINTNISKSPII 144 + G E+ + + + S V + S+P +T+ +P+ + SP Sbjct: 63 LND----FCGTEVPLLRIEVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDNSP-- 116 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 117 -AQPELS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 168 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LL Sbjct: 169 TGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 228 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 229 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 288 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 289 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 343 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 344 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 402 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 403 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|77358983|ref|YP_338558.1| DNA replication initiator [Pseudoalteromonas haloplanktis TAC125] gi|76873894|emb|CAI85115.1| DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes, binds cardiolipin and other acidic phospholipids, binds ATP [Pseudoalteromonas haloplanktis TAC125] Length = 474 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 156/471 (33%), Positives = 259/471 (54%), Gaps = 39/471 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L++++ ++ W + L+ S + + + P F+ W++ +YL I +L E I Sbjct: 27 LQDELPSQQFSMWVRPLQAEST-EDTLTIYAPNRFVLDWVREKYLNRINELLVE----IC 81 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-PIILGKQ-------TISPV---- 153 GVE P + S + P++ ++S P KQ + P Sbjct: 82 GVEA-------PELRFDVGSKPLLNAQPVSVAGTQSAPTTQAKQQSRQPKPVVEPAPKSE 134 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S + + F +F+EG SN++A AA +A D+ G NP+FI+ GLGKTHLL Sbjct: 135 YKSNIKENYTFDSFVEGKSNQLAKAAATQVA--DNPG---AAFNPVFIYGGTGLGKTHLL 189 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +P+ ++VY+ +E F+ A+++N K R++D L+IDD+QF Sbjct: 190 HAVGNGILANKPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFAN 249 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E R Sbjct: 250 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETR 309 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTA 390 +IL + + + K+N+ EV +A+ + ++ REL+GA N+++ +F PI + Sbjct: 310 VAIL-----MKKAQQSKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPI-SI 363 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ + K + I++IQR VA++Y I +DLLS RR R++ RPRQVAM LSK Sbjct: 364 DFVKEALRDLLAL-QDKLVTIDNIQRTVAEYYRIRISDLLSKRRSRSIARPRQVAMALSK 422 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RKV+ + + +K++ + L R +S Sbjct: 423 ELTNHSLPEIGDAFGGRDHTTVLHACRKVKSLRDESHEIKEDYQNLIRTLS 473 >gi|307243408|ref|ZP_07525565.1| chromosomal replication initiator protein DnaA [Peptostreptococcus stomatis DSM 17678] gi|306493218|gb|EFM65214.1| chromosomal replication initiator protein DnaA [Peptostreptococcus stomatis DSM 17678] Length = 454 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 157/481 (32%), Positives = 267/481 (55%), Gaps = 41/481 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFH-SVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ ++++T +LK ++ +F ++ +NI++LS N K + + +Y + Sbjct: 1 MDVKNLWTSAQQKLKGVFPKSIFTLYFNENTVPIAINNNILYLS-GDNRSKEFFEKQYKD 59 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-------SPII 144 I F E + I+ V +L T + INTNI K S I Sbjct: 60 KILVAFDELAANIKDVIVLTNDD--------------TTDTEINTNIEKNSNPKENSEKI 105 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + T + S L+ ++ F+TF+ GSSN +A+ A Q +AE D T NPLF++ Sbjct: 106 MDLAT--SIANSNLNPKYTFNTFVVGSSNAMAVAACQRVAEYDE----TANDNPLFLYGG 159 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI + ++R P+ +++Y+++E F +AIR+ ++ RN+D+ + Sbjct: 160 VGLGKTHLMHAIGHRVLERDPSKKILYVSSETFTNEMVTAIREKKNSEFREKYRNVDIFM 219 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF+ GK +Q E H N + + K+++ ++D+PP ++ L+ R+RSR G+ Sbjct: 220 IDDVQFVAGKNSVQEELFHTFNDVHGAGKKIILSSDKPPKDIPELEERLRSRFVWGLITD 279 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + DY R +IL+N+ E+ KL+I+ +V ++A V ++ REL+GA N+++ + Sbjct: 280 IQAPDYGTRMAILQNK-----AENDKLDIDSDVFEYIADNVKSNIRELEGALNKVILYSN 334 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 A + A E L ++ + TK++ I I+ MVA YNIS DL+S +R + + PR Sbjct: 335 LSAKPMNLATAKEALKDVLVSYTTKEVNILRIKEMVADAYNISVEDLISKKRTKNIAFPR 394 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL-LKRLIS 501 QVAMY+S+ + S P IG FG RDHTTV+HAV K+ DI +EV++ ++++IS Sbjct: 395 QVAMYISRNLLDLSLPAIGDEFGGRDHTTVMHAVNKISD----DIQKSEEVKIKIEKIIS 450 Query: 502 E 502 + Sbjct: 451 D 451 >gi|261213263|ref|ZP_05927545.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC341] gi|260837537|gb|EEX64240.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC341] Length = 458 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 263/480 (54%), Gaps = 48/480 (10%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L E Sbjct: 3 RLQEELPAAEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNNINRLLME----F 57 Query: 105 QG-------VEILVRSVALP---------SVEKTASSPS-ITKLSPINT---NISKSPII 144 G E+ R V P V +S+P+ + + PI+ + S + I Sbjct: 58 SGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSAAADI 117 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + ++P + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 118 THRSNVNP--------KHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGG 164 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 165 TGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 224 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 225 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 284 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ + Sbjct: 285 IEPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANAN 339 Query: 384 FA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 F PI T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RP Sbjct: 340 FTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARP 397 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 398 RQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 457 >gi|255746805|ref|ZP_05420751.1| chromosomal replication initiator protein dnaA [Vibrio cholera CIRS 101] gi|262155885|ref|ZP_06029007.1| chromosomal replication initiator protein dnaA [Vibrio cholerae INDRE 91/1] gi|262172778|ref|ZP_06040456.1| chromosomal replication initiator protein dnaA [Vibrio mimicus MB-451] gi|262402082|ref|ZP_06078646.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC586] gi|255735562|gb|EET90961.1| chromosomal replication initiator protein dnaA [Vibrio cholera CIRS 101] gi|261893854|gb|EEY39840.1| chromosomal replication initiator protein dnaA [Vibrio mimicus MB-451] gi|262030337|gb|EEY48979.1| chromosomal replication initiator protein dnaA [Vibrio cholerae INDRE 91/1] gi|262351728|gb|EEZ00860.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC586] Length = 458 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 161/480 (33%), Positives = 263/480 (54%), Gaps = 48/480 (10%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L E Sbjct: 3 RLQEELPAAEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNNINRLLME----F 57 Query: 105 QG-------VEILVRSVALP---------SVEKTASSPS-ITKLSPINT---NISKSPII 144 G E+ R V P V +S+P+ + + PI+ + S + I Sbjct: 58 SGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSAAADI 117 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + ++P + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 118 THRSNVNP--------KHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGG 164 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 165 TGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 224 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 225 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVA 284 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ + Sbjct: 285 IEPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANAN 339 Query: 384 FA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 F PI T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RP Sbjct: 340 FTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARP 397 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 398 RQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 457 >gi|238759584|ref|ZP_04620746.1| Chromosomal replication initiator protein dnaA [Yersinia aldovae ATCC 35236] gi|238702243|gb|EEP94798.1| Chromosomal replication initiator protein dnaA [Yersinia aldovae ATCC 35236] Length = 462 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 263/476 (55%), Gaps = 29/476 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSP--SITKLSPINTNISKSPIILGK 147 + R + G + VR+ P V + S+P +T+ +P+ + SP Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAVRAHNHP-VTASVSAPVAPVTRSAPVRPSWDSSP----- 116 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 117 AQPEHSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 171 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N I R+ N +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 172 GKTHLLHAVGNGIIARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 292 PELETRVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 346 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 347 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 405 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 406 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|209693643|ref|YP_002261571.1| chromosomal replication initiation protein [Aliivibrio salmonicida LFI1238] gi|226735772|sp|B6EP46|DNAA_ALISL RecName: Full=Chromosomal replication initiator protein DnaA gi|208007594|emb|CAQ77694.1| chromosomal replication initiator protein DnaA [Aliivibrio salmonicida LFI1238] Length = 468 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 161/476 (33%), Positives = 267/476 (56%), Gaps = 23/476 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL +I L Sbjct: 4 SLWLQCLQRLQEELPSAEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNSINSL 62 Query: 97 FQEE-HSRIQGVEILVRS---VALPSVEKTASSPSITKLSPIN----TNISKSPIILGKQ 148 E I + V S A P ++TA+ + +P ++ K G + Sbjct: 63 LNEFCGGDIPTLRFEVGSKPISAPPRPQRTAADVAAATSAPAQMQARQSLHKPWESRGPE 122 Query: 149 TISPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ GL Sbjct: 123 PVDDLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAY-----NPLFLYGGTGL 177 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLLQA+ NA ++R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 178 GKTHLLQAVGNAILERKPNAKVVYMHSERFVQDMVKALQNNAIEEFKCYYRSVDALLIDD 237 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 297 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N++V +F Sbjct: 298 PELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVVANANFTG 352 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 353 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADLLSKRRSRSVARPRQLA 411 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M LSK +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 412 MALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYSNLIRTLS 467 >gi|323703942|ref|ZP_08115572.1| chromosomal replication initiator protein DnaA [Desulfotomaculum nigrificans DSM 574] gi|323531100|gb|EGB21009.1| chromosomal replication initiator protein DnaA [Desulfotomaculum nigrificans DSM 574] Length = 442 Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 157/483 (32%), Positives = 256/483 (53%), Gaps = 52/483 (10%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ N ++++ V L+ QV + +W + K + N + + VP +F K W+ +RY Sbjct: 1 MQSNIQAMWDQVLVLLEKQVNKHSFDTWLAKCKPVAFYDNTIIIEVPDHFSKGWLADRYA 60 Query: 91 ETITKLFQE-EHSRIQGVEILV-RSVALP--SVEKTASSPSITKLSPINTNISKSPIILG 146 I + ++ H + IL + + P + EK I L+P Sbjct: 61 PIIKQAYEVIAHQEVSLQFILAGQELEQPNKAREKAQDETYINILNP------------- 107 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 R+ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VG Sbjct: 108 --------------RYTFDTFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVG 148 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI + ++ P L+V Y T+E F ++IRD+ ++ R++D+LLID Sbjct: 149 LGKTHLMHAIGHYILQNNPGLKVAYCTSEKFTNELINSIRDDQTEEFRNKYRSMDILLID 208 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL+ K Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 209 DIQFLEKKERTQEEFFHTFNTLYEANKQIIISSDRPPKEIATLEDRLRSRFEWGLITDIQ 268 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG------AFNQLV 379 DYE R +IL+ + + NI +E + +A + ++ REL+G AF+ L Sbjct: 269 SPDYETRVAILRKKAQLEGLS----NIPDETIAFIADKIQSNIRELEGALIRVTAFSNLE 324 Query: 380 FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 R + T +A E+L +++ + K + + I + VA Y I DL + +R R+V Sbjct: 325 KREA-----TPALAAEVLKDVISPSKPKVITVPLIMQTVADFYGIRLEDLKAKKRTRSVA 379 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PRQVAMYL++ + S P+IG FG RDHTTVLHA K+ L +D L++ ++ L++ Sbjct: 380 FPRQVAMYLTRELMDLSLPKIGEEFGGRDHTTVLHACDKIVADLASDPVLQETIKELRKR 439 Query: 500 ISE 502 ISE Sbjct: 440 ISE 442 >gi|317494667|ref|ZP_07953079.1| chromosomal replication initiator protein DnaA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917269|gb|EFV38616.1| chromosomal replication initiator protein DnaA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 466 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 155/481 (32%), Positives = 262/481 (54%), Gaps = 35/481 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV--- 153 + G + V + + TA+ P SP+ ++S I + ++P+ Sbjct: 63 LND----FCGSDAPVLRFEVGTKPATAAIPV---QSPVMASVSAPVIQTAARNVAPMRPS 115 Query: 154 -----------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 116 WDNSPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLY 170 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D Sbjct: 171 GGTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDA 230 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++ Sbjct: 231 LLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLT 290 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ Sbjct: 291 VAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIAN 345 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V R Sbjct: 346 ANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVAR 404 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R + Sbjct: 405 PRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 464 Query: 501 S 501 S Sbjct: 465 S 465 >gi|229508297|ref|ZP_04397801.1| chromosomal replication initiator protein dnaA [Vibrio cholerae BX 330286] gi|229508864|ref|ZP_04398355.1| chromosomal replication initiator protein dnaA [Vibrio cholerae B33] gi|229515949|ref|ZP_04405406.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TMA 21] gi|229517135|ref|ZP_04406581.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC9] gi|229520184|ref|ZP_04409611.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TM 11079-80] gi|229530202|ref|ZP_04419591.1| chromosomal replication initiator protein dnaA [Vibrio cholerae 12129(1)] gi|229606571|ref|YP_002877219.1| chromosomal replication initiation protein [Vibrio cholerae MJ-1236] gi|258622958|ref|ZP_05717973.1| chromosomal replication initiation protein [Vibrio mimicus VM573] gi|258626082|ref|ZP_05720933.1| chromosomal replication initiation protein [Vibrio mimicus VM603] gi|31340536|sp|Q9KVX6|DNAA_VIBCH RecName: Full=Chromosomal replication initiator protein DnaA gi|229332335|gb|EEN97822.1| chromosomal replication initiator protein dnaA [Vibrio cholerae 12129(1)] gi|229342778|gb|EEO07769.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TM 11079-80] gi|229346198|gb|EEO11170.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC9] gi|229347049|gb|EEO12011.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TMA 21] gi|229354139|gb|EEO19071.1| chromosomal replication initiator protein dnaA [Vibrio cholerae B33] gi|229354570|gb|EEO19492.1| chromosomal replication initiator protein dnaA [Vibrio cholerae BX 330286] gi|229369226|gb|ACQ59649.1| chromosomal replication initiator protein dnaA [Vibrio cholerae MJ-1236] gi|258581608|gb|EEW06506.1| chromosomal replication initiation protein [Vibrio mimicus VM603] gi|258584741|gb|EEW09475.1| chromosomal replication initiation protein [Vibrio mimicus VM573] Length = 467 Score = 252 bits (644), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 161/484 (33%), Positives = 268/484 (55%), Gaps = 40/484 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L Sbjct: 4 SLWLQCLQRLQEELPAAEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNNINRL 62 Query: 97 FQE-EHSRIQGV--EILVRSVALP---------SVEKTASSPS-ITKLSPINT---NISK 140 E + + + E+ R V P V +S+P+ + + PI+ + S Sbjct: 63 LMEFSGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSA 122 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + I + ++P + F+ F+EG SN++ L AA+ +++ Y NPLF Sbjct: 123 AADITHRSNVNP--------KHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLF 169 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++ Sbjct: 170 LYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV 229 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G Sbjct: 230 DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWG 289 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ Sbjct: 290 LTVAIEPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVI 344 Query: 380 FRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 +F PI T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+ Sbjct: 345 ANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRS 402 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L Sbjct: 403 VARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLI 462 Query: 498 RLIS 501 R +S Sbjct: 463 RTLS 466 >gi|157373147|ref|YP_001471747.1| chromosomal replication initiation protein [Shewanella sediminis HAW-EB3] gi|189083280|sp|A8FP46|DNAA_SHESH RecName: Full=Chromosomal replication initiator protein DnaA gi|157315521|gb|ABV34619.1| chromosomal replication initiator protein DnaA [Shewanella sediminis HAW-EB3] Length = 462 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 152/472 (32%), Positives = 251/472 (53%), Gaps = 21/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAQMDGDTLV-LYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 F E+ ++ + PS + + + + N + + P Sbjct: 63 FTEQMGS-DAPKLRFDIGSRPSAPRPVQATAAVERPKFEQNTKPAKTSFNVNSPEPAMAA 121 Query: 156 ---SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHL Sbjct: 122 NHRSNINRTYQFENFVEGKSNQLGKAAAMQVAENPGGAY-----NPLFLYGGTGLGKTHL 176 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 177 LHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFA 236 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ Q++ +D+ P E++ ++ R++SR G++V + + E Sbjct: 237 NKDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELET 296 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F PI T Sbjct: 297 RVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-T 350 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LS Sbjct: 351 IDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALS 409 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG FG RDHTTVLHA RK+ ++ E K++ L R +S Sbjct: 410 KELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDTKEDYANLIRTLS 461 >gi|86147175|ref|ZP_01065491.1| chromosomal replication initiation protein [Vibrio sp. MED222] gi|218708098|ref|YP_002415719.1| chromosomal replication initiation protein [Vibrio splendidus LGP32] gi|254777922|sp|B7VGI4|DNAA_VIBSL RecName: Full=Chromosomal replication initiator protein DnaA gi|85835059|gb|EAQ53201.1| chromosomal replication initiation protein [Vibrio sp. MED222] gi|218321117|emb|CAV17067.1| Chromosomal replication initiator protein dnaA [Vibrio splendidus LGP32] Length = 473 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 159/453 (35%), Positives = 250/453 (55%), Gaps = 37/453 (8%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRSVALPSVEKTASSP 126 N + L P F+ W++++YL +I +L QE EI + V P E A P Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDIPHLHFEIGNKRVTAPKSETIA--P 93 Query: 127 SITKLSPINTNISKSPIILGKQTISPVFG---------------SPLDSRFVFSTFIEGS 171 + T+ + S +P L Q PV S ++ + F+ F+EG Sbjct: 94 ARTRTAADVAAESSAPAQL--QARKPVHNIWRDEEPVAVDLNHRSNVNPKHKFNNFVEGK 151 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SN++ L AA+ +++ Y NPLF++ GLGKTHLL A+ NA + +PN +VVY Sbjct: 152 SNQLGLAAARQVSDNPGTAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVY 206 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 207 MHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEG 266 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ED ++ Sbjct: 267 NQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQI 321 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKK 408 ++ +EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K Sbjct: 322 HLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KL 379 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RD Sbjct: 380 VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRD 439 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHA RK+ ++ E +K++ L R +S Sbjct: 440 HTTVLHACRKIAQLREESHDIKEDYSNLIRTLS 472 >gi|294053542|ref|YP_003547200.1| chromosomal replication initiator protein DnaA [Coraliomargarita akajimensis DSM 45221] gi|293612875|gb|ADE53030.1| chromosomal replication initiator protein DnaA [Coraliomargarita akajimensis DSM 45221] Length = 469 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 158/476 (33%), Positives = 254/476 (53%), Gaps = 30/476 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ V++ LK+ D+Y WF LK + L+ P F WI+N YL+ I + Sbjct: 9 SLWESVNNELKSLFPADLYDMWFDDLKCVEQSEQKIVLAAPNEFNAIWIENNYLDVIAQQ 68 Query: 97 FQEEHSRIQGVEILVRSVA--LPSVEKT----ASSPSITKLSPI---NTNISKSPIILGK 147 + + +LV VA +VE+T A S ++ P T +K+P + Sbjct: 69 ARSFAGAQVEISVLVDEVADEAVTVERTNRLSAKSKQSDRVVPTVAARTEGAKAP--QAR 126 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +T+ L+ R F F+ GS N++A A+ ++A Y NPLF+ GL Sbjct: 127 RTL-------LNPRNTFENFVVGSGNQLAHAASIAVANAPGRAY-----NPLFVFGETGL 174 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A+A+ + PN R+ Y++ E F F AI++N + R +D LL+DD Sbjct: 175 GKTHLMHAVAHQMLVNNPNARIAYVSTEKFTNEFIRAIQENKLAKFRKYYRTVDALLVDD 234 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + FL GK Q EF H N L +S +Q+ A+DRP +E+E L+ R+ SR Q G+ + Sbjct: 235 IHFLSGKESTQEEFFHTFNDLFESGRQIFLASDRPANEIERLENRLISRFQWGLVTDMQA 294 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYE R +IL+ + AI+ + +++ ++ +A V+ + R ++GA ++ +S Sbjct: 295 PDYETRVAILRKK-AIAMD----ITLDDSIVDFLAERVSRNVRRMEGALTRIASYNSLMN 349 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 L + + LLS L K+ +E IQ+ V+++Y I +DL+ RR ++V PRQVA Sbjct: 350 RQLDLDGVERLLSDLFQEEAASKVTVEQIQKKVSEYYQIRYSDLIGRRRTSSIVFPRQVA 409 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MY+S+ +T IG FG RDH TV+HA ++VE M+E D T+K+ V+ L + +S Sbjct: 410 MYISRTLTSDPLKSIGDAFGGRDHGTVIHACKQVENMMEQDGTVKRAVDYLIKQLS 465 >gi|326793323|ref|YP_004311143.1| Chromosomal replication initiator protein dnaA [Marinomonas mediterranea MMB-1] gi|326544087|gb|ADZ89307.1| Chromosomal replication initiator protein dnaA [Marinomonas mediterranea MMB-1] Length = 514 Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 162/515 (31%), Positives = 263/515 (51%), Gaps = 69/515 (13%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +L+++V + +W + L+ + + L P F+ W+ N+Y I +L E S Sbjct: 11 GKLQDEVSASQFNTWIRPLQAEESVSGELCLFAPNRFVLDWVNNKYQARIKELLAE-FSG 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSI-----TKLSPINTNISKSPIILGKQTISPV----- 153 L+ +V P T++ P TK P+ T + S G+ T PV Sbjct: 70 ENPAPNLMLAVKQPGFAATSAPPPPPPVVETKAPPVATVENDSGYRPGQVTYEPVEEPIS 129 Query: 154 ---------------------------------------------FGSPLDSRFVFSTFI 168 G+ L++ F F F+ Sbjct: 130 GLEFEAPLTLSDSDVLLNGDLEPYEQGQLPLTPPNRKVEVEGGINHGANLNNSFTFDNFV 189 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA +AE Y NPLFI+ VGLGKTHL+QA+ ++ PN + Sbjct: 190 EGKSNQLAHAAALQVAENPGGAY-----NPLFIYGGVGLGKTHLMQAVGTELMRHNPNAK 244 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVYL +E F+ A++ N + K R++D LLIDD+QF GK Q EF H N+L Sbjct: 245 VVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGKDRTQEEFFHTFNAL 304 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +Q++ DR P E++ L+ R++SR G++V + + E R +IL + + E+ Sbjct: 305 LEGGQQMILTCDRYPKEIQGLEDRLKSRFGWGLTVAVEPPELETRVAIL-----MRKAEE 359 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 + ++ + +A+ + ++ REL+GA +++ F +T + E L L+ + Sbjct: 360 SGVKLSYDSAFFIAQKIRSNVRELEGALKRVIANSHFTGRAITPDFVRESLKDLLAL-QD 418 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++IQR+VA++Y I +DLLS RR R+V RPRQVAM L+K +T S PEIG FG Sbjct: 419 KLVNIDNIQRIVAEYYKIKISDLLSKRRSRSVARPRQVAMSLAKELTNHSLPEIGDAFGG 478 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTT LHA+RK++++ +TD ++++ + L R+++ Sbjct: 479 RDHTTALHAIRKIKELQDTDSDIREDYKQLMRILT 513 >gi|227498788|ref|ZP_03928928.1| chromosomal replication initiator protein [Acidaminococcus sp. D21] gi|226904240|gb|EEH90158.1| chromosomal replication initiator protein [Acidaminococcus sp. D21] Length = 458 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 153/442 (34%), Positives = 245/442 (55%), Gaps = 25/442 (5%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 W + S+ + + L V +F K WI N Y E I + + +R +++ +R P Sbjct: 29 WLSQAVPRSLTEDTLLLDVMNDFTKEWIINNYKEPIEAFLKSQFNRPMTLDVEIR----P 84 Query: 118 SVEKTASS--PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 + P +P +K P+I K+ F S L ++VF F+ G+SNR Sbjct: 85 DLANKEEDLFPGHGAAAPK----AKEPLI-PKKGPRQDFSSNLSPKYVFENFVIGNSNRF 139 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A A++++AE + Y NPLF+++ GLGKTHL+ AI N + P ++++Y ++E Sbjct: 140 AHAASKAVAEAPAKVY-----NPLFLYSDSGLGKTHLMNAIGNKIHQDHPEMKILYTSSE 194 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F ++I++N ++ RNID+LLIDD+QFL+ K Q EF H +L + KQ+ Sbjct: 195 TFTNELINSIQNNATEAFRNKYRNIDVLLIDDIQFLRKKESTQEEFFHTFETLYKAEKQI 254 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + ++DR PSEL++L+ R++SR G+ + D E R +ILKN +A+ +++ + Sbjct: 255 IISSDRKPSELDTLEERLKSRFTWGLIADIQPPDLETRIAILKN-MALKDH----ISVPD 309 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIE 412 V +A ++T+ REL+GA+ ++ F+ PI T E+A E L L T ++ + IE Sbjct: 310 SVTNLIASNISTNIRELEGAYTKVRAYSQFSNEPI-TEELAIEALKDLNLTPVSRTITIE 368 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 IQ+ +A +YNI+ NDLLS +R + PRQ+ MYL++ +T S P IG FG RDHTTV Sbjct: 369 AIQQYIASYYNITLNDLLSKKRTANITLPRQIGMYLARTLTDLSLPRIGESFGGRDHTTV 428 Query: 473 LHAVRKVEKMLETDITLKKEVE 494 LHA K+ + KE+E Sbjct: 429 LHACDKILSKSKEKTEFAKEIE 450 >gi|197286950|ref|YP_002152822.1| chromosomal replication initiator protein [Proteus mirabilis HI4320] gi|227354809|ref|ZP_03839226.1| DNA-directed DNA replication initiator protein [Proteus mirabilis ATCC 29906] gi|118708|sp|P22837|DNAA_PROMI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735833|sp|B4F0U5|DNAA_PROMH RecName: Full=Chromosomal replication initiator protein DnaA gi|150878|gb|AAA83958.1| dnaA [Proteus mirabilis] gi|194684437|emb|CAR46152.1| chromosomal replication initiator protein [Proteus mirabilis HI4320] gi|227165127|gb|EEI49958.1| DNA-directed DNA replication initiator protein [Proteus mirabilis ATCC 29906] Length = 466 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/475 (32%), Positives = 265/475 (55%), Gaps = 23/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQHCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVREKYINNINAL 62 Query: 97 FQE------EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + R + V + SV KT + P++ +P N+ + Q+ Sbjct: 63 LVDFCGSDVPSLRFEVGNKPVSARTTESVPKTVTHPAVNS-TPTNSQPVRPSWDNQPQSQ 121 Query: 151 SPV--FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 122 LPELNYRSNVNPKHKFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N+ ++R+ N +VVY+ +E F+ A+++N + K R++D LLIDD+ Sbjct: 177 KTHLLHAVGNSIMERKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDI 236 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 237 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ ++ + +EV +A+ + ++ REL+GA N+++ +F Sbjct: 297 ELETRVAIL-----MKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 352 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|21240775|ref|NP_640357.1| chromosomal replication initiation protein [Xanthomonas axonopodis pv. citri str. 306] gi|38257669|sp|Q8PRG2|DNAA_XANAC RecName: Full=Chromosomal replication initiator protein DnaA gi|21106039|gb|AAM34893.1| chromosomal replication initiator [Xanthomonas axonopodis pv. citri str. 306] Length = 442 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 164/482 (34%), Positives = 250/482 (51%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + VAL + + + + +PI Sbjct: 48 QVRERYLPRIRELL--------AYFVGNGDVALAVGSRPRAPEPAPAPVAVPSAPQAAPI 99 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 + F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 100 V--------PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|297564485|ref|YP_003683457.1| chromosomal replication initiator protein DnaA [Meiothermus silvanus DSM 9946] gi|296848934|gb|ADH61949.1| chromosomal replication initiator protein DnaA [Meiothermus silvanus DSM 9946] Length = 439 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 156/467 (33%), Positives = 262/467 (56%), Gaps = 34/467 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ ++I+ V ++ + Y +WF++++ V ++ L VPT+F WIK Y E Sbjct: 1 MSQQTIWQNVLDYVRQNINDVEYHTWFEKIRPLGVHGGVLELGVPTSFAGEWIKKHYAE- 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 L QE +R+ P E + +P+ +I +P+ Q +P Sbjct: 60 ---LIQEALTRL--------GAQTPRFEL-----KVVPGNPVQEDIFSAPV----QAPAP 99 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ ++ F F+ G +NR+A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 100 DPRSRLNPKYTFENFVVGQNNRLAHAAAMAVAESPGKAY-----NPLFIYGGVGLGKTHL 154 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ ++ R P+LR+ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ Sbjct: 155 MHAVGHSVAARFPSLRIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDIQFVA 214 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + + E Sbjct: 215 GKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPELET 274 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK E + I EEVL ++AR VT++ REL+GA +++ S + +T Sbjct: 275 RIAILK-----MNSEYRSMRIPEEVLEYIARQVTSNIRELEGALMRVIAYASLNGVEITK 329 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A LS + ET +DI R VA HY + ++L R + VV PRQ+AM+L + Sbjct: 330 NVAARALSDVFTARET-DFSPDDILRAVADHYGLRTDELKGAGRRKEVVIPRQIAMFLIR 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +T S PEIG+ F RDHTTVL+A++KV+++ ++D ++++ + +K Sbjct: 389 ELTQSSLPEIGQFFDGRDHTTVLYAIQKVQELADSDPSIQQTLRSIK 435 >gi|159896534|ref|YP_001542781.1| chromosomal replication initiation protein [Herpetosiphon aurantiacus ATCC 23779] gi|226735818|sp|A9B496|DNAA_HERA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|159889573|gb|ABX02653.1| chromosomal replication initiator protein DnaA [Herpetosiphon aurantiacus ATCC 23779] Length = 472 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 165/478 (34%), Positives = 265/478 (55%), Gaps = 30/478 (6%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 FT + + L+NQ+ Y +W + SV +++ + P K I++R++ + + Sbjct: 8 FTTLGT-LQNQILRYDYDTWLKTTALVSVANDLAVIGAPNVTTKQVIEDRFMSVLRRALG 66 Query: 99 EEHSRIQGVEILVR---SVALPS----VEKTASSPSITK--LSPINTNISKSPIILGKQT 149 E + G ++ VR S A P+ V T S PS T P + +++ +L + Sbjct: 67 E----VLGYQVNVRVIISSATPAPSEPVAVTPSEPSPTTEVAEPSFASFNQAAPMLNQLP 122 Query: 150 IS-PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + P S L+ R+ FS+FI G+SNR+A A ++AE + Y NPLF++ VGLG Sbjct: 123 LGDPNRSSVLNPRYTFSSFIVGTSNRLAHAACMAVAEHPAQAY-----NPLFLYGGVGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQAI N ++ R P + V+Y+++E F +AIR + RNID+LLIDD+ Sbjct: 178 KTHLLQAIGNYALDRNPEVNVLYVSSEKFTNDLINAIRRQQTEEFRIRYRNIDILLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H N+L + KQ+V ++DRPP + +L+ R+RSR + G+ V + Sbjct: 238 QFIAGKEGTQEEFFHTFNTLHGAGKQIVLSSDRPPKAILTLEERLRSRFEWGLIVDVQNP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--A 385 D E R +IL+ ++ E ++ ++ EV+ +A+ + ++ REL+G N+++ + Sbjct: 298 DLETRTAILR-----AKGETLQVPVSSEVIDFLAQRIQSNIRELEGCLNRVIAYANLNRT 352 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 P+ T E+A L+ L++T K++ +DI R V++HY I + + R R VV PRQV Sbjct: 353 PV-TVEVASAALADLLDTSRRKRVTADDIFREVSQHYGIDQRAIRGRGRSRNVVLPRQVV 411 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRLISE 502 MYL + T S EIG G RDHTTV+H K+ L +D L+ ++ L +RL E Sbjct: 412 MYLLREETDASLVEIGELLGGRDHTTVMHGYNKITDDLTSDARLRNDITSLRQRLYGE 469 >gi|262281562|ref|ZP_06059341.1| chromosomal replication initiator protein DnaA [Acinetobacter calcoaceticus RUH2202] gi|262257021|gb|EEY75760.1| chromosomal replication initiator protein DnaA [Acinetobacter calcoaceticus RUH2202] Length = 468 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 161/478 (33%), Positives = 266/478 (55%), Gaps = 28/478 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-EGILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINT-NISKSPIILGKQTISP 152 ++ R++ VEILV S L S E+ A++ + + +P + + K P + + Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSAEQPATTTAALQSAPPQSIKVKKEPESVSSPHTNT 120 Query: 153 VFGSP------LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASV 205 V L+ +F FS F+EG SN++A T + + ++ + + NPLF++ Sbjct: 121 VVNPKTAKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+ Sbjct: 176 GLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLV 235 Query: 266 DDMQFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 236 DDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGV 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RH 382 D E R IL + + E+ +++ + +A+ V + REL+GA N++V R Sbjct: 296 EPPDIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRF 350 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 API + + L L T + +E+IQR+V++++ I +L+ +R R RPR Sbjct: 351 KGAPIDLDVVRESLKDVLAIRART--ISVENIQRVVSEYFRIPLKELVGPKRTRIYARPR 408 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 Q+AM L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 409 QLAMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVASLREEDPIFDEDYKNLLRLL 466 >gi|260771047|ref|ZP_05879975.1| chromosomal replication initiator protein dnaA [Vibrio furnissii CIP 102972] gi|260613936|gb|EEX39127.1| chromosomal replication initiator protein dnaA [Vibrio furnissii CIP 102972] gi|315178626|gb|ADT85540.1| chromosomal replication initiation protein [Vibrio furnissii NCTC 11218] Length = 468 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 156/452 (34%), Positives = 253/452 (55%), Gaps = 40/452 (8%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQE--EHSRIQ-GVEILVRSVALP--------- 117 N + L P F+ W++++Y+ I +L ++ H E+ R V P Sbjct: 36 NTLTLFAPNRFVLDWVRDKYINNINRLLKDFCGHDVPSLRFEVGSRRVVAPKPTQKRTAA 95 Query: 118 SVEKTASSPS-ITKLSPI----NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 V +S+P+ + + PI + + + +P I + ++P + F+ F+EG S Sbjct: 96 DVAAESSAPAQLAQRKPIHKTWDDDAANAPEITYRSNMNP--------KHKFNNFVEGKS 147 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N++ L AA+ +++ Y NPLF++ GLGKTHLL A+ NA + PN +VVY+ Sbjct: 148 NQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYM 202 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 203 HSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGN 262 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ED +++ Sbjct: 263 QQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIH 317 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKM 409 + +EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + Sbjct: 318 LPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLV 375 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM LSK +T S PEIG FG RDH Sbjct: 376 TIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALSKELTNHSLPEIGDAFGGRDH 435 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TTVLHA RK+E++ E +K++ L R +S Sbjct: 436 TTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|294627438|ref|ZP_06706022.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665122|ref|ZP_06730425.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598259|gb|EFF42412.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605123|gb|EFF48471.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 442 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 164/482 (34%), Positives = 250/482 (51%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + VAL + + + + +PI Sbjct: 48 QVRERYLPRIRELLAYFAGNGE--------VALAVGSRPRAPEPAPAPVAVPSAPQAAPI 99 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 + F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 100 V--------PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|37524033|ref|NP_927377.1| chromosomal replication initiation protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|61212694|sp|Q7NAD3|DNAA_PHOLL RecName: Full=Chromosomal replication initiator protein DnaA gi|36783456|emb|CAE12296.1| Chromosomal replication initiator protein DnaA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 462 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 158/475 (33%), Positives = 263/475 (55%), Gaps = 27/475 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSGNTLALYAPNRFVLDWVREKYINNINGL 62 Query: 97 FQEEHSRIQGVEI-LVR-SVALPSVEKTASSP----SITKLSPINTNISKSPIILGKQTI 150 + G E+ L+R V V + S P + T ++P N S P + Sbjct: 63 LND----FCGAEVPLLRFEVGNKPVSQNDSPPQRVVTHTPVAPAPQNTSVRPS-WDNTAV 117 Query: 151 SP--VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 118 QPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 172 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N+ + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 173 KTHLLHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 232 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 233 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 292 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F Sbjct: 293 ELETRVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 347 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 348 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 406 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|229524913|ref|ZP_04414318.1| chromosomal replication initiator protein dnaA [Vibrio cholerae bv. albensis VL426] gi|229338494|gb|EEO03511.1| chromosomal replication initiator protein dnaA [Vibrio cholerae bv. albensis VL426] Length = 467 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 162/484 (33%), Positives = 267/484 (55%), Gaps = 40/484 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L Sbjct: 4 SLWLQCLQRLQEELPAAEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNNINRL 62 Query: 97 FQE------EHSRIQ-GVEILVRSVALP-----SVEKTASSPS-ITKLSPINT---NISK 140 E + R + G LV P V +S+P+ + + PI+ + S Sbjct: 63 LMEFSGNDVPNLRFEVGSRPLVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSA 122 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + I + ++P + F+ F+EG SN++ L AA+ +++ Y NPLF Sbjct: 123 AADITHRSNVNP--------KHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLF 169 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++ Sbjct: 170 LYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV 229 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G Sbjct: 230 DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWG 289 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ Sbjct: 290 LTVAIEPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVI 344 Query: 380 FRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 +F PI T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+ Sbjct: 345 ANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRS 402 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L Sbjct: 403 VARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLI 462 Query: 498 RLIS 501 R +S Sbjct: 463 RTLS 466 >gi|320666234|gb|EFX33240.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. LSU-61] Length = 467 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 154/475 (32%), Positives = 260/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 ---FQEEHSRIQGVEILVRSVA-LPSVEKTASSPSITKLSPINTNISKSPIILGKQTI-- 150 F + E+ +SV P T++ + +++ + G + Sbjct: 63 LTSFCGADAPQLRFEVGTKSVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 151 --SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEERLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|229587579|ref|YP_002869698.1| chromosomal replication initiation protein [Pseudomonas fluorescens SBW25] gi|259645257|sp|B0B0A5|DNAA_PSEFS RecName: Full=Chromosomal replication initiator protein DnaA gi|164564809|emb|CAJ57270.1| chromosomal replication initiator protein DnaA [Pseudomonas fluorescens SBW25] Length = 501 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 161/500 (32%), Positives = 262/500 (52%), Gaps = 56/500 (11%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L++++ + +W + L+ + + + + P F+ W+ +YL + +L E + + Sbjct: 13 LRDELPAQQFNTWIRPLQVEAE-GDELRVYAPNRFVLDWVNEKYLSRVLELLDEHGNGLA 71 Query: 106 GVEILV-----------------------------RSVALPSVEKTAS--------SPSI 128 V L+ S P+ K+++ PS Sbjct: 72 PVLSLLIGSKRSSAPRAAPNAPLAAAASQAQAAPVASTPAPAPSKSSAKKNAAENEEPSR 131 Query: 129 TKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAAQSI 183 P+ S+ I +Q V G S L+ F F F+EG SN++A AA + Sbjct: 132 DSFDPMAGASSQQAPIRAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQV 191 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 192 ADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVK 246 Query: 244 AIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPP 302 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +DR P Sbjct: 247 ALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYP 306 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 E+E L+ R++SR G++V + + E R +IL + + + K+++ + +A+ Sbjct: 307 KEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFFIAQ 361 Query: 363 TVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH 421 + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR VA++ Sbjct: 362 RIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTVAEY 420 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK+ + Sbjct: 421 YKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRKINE 480 Query: 482 MLETDITLKKEVELLKRLIS 501 + E+D ++++ + L R ++ Sbjct: 481 LKESDADIREDYKNLLRTLT 500 >gi|312882235|ref|ZP_07741981.1| chromosomal replication initiation protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309370079|gb|EFP97585.1| chromosomal replication initiation protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 468 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 154/440 (35%), Positives = 250/440 (56%), Gaps = 24/440 (5%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEE-HSRIQGVEILVRS----VALPSVEKTASSPSI 128 L P F+ W++++YL +I +L QE + I + V S VA + ++T + + Sbjct: 40 LFAPNRFVLDWVRDKYLNSINRLLQEYCGNDIPSLRFEVGSRPVAVAKTAPKRTPADVAA 99 Query: 129 TKLSPINTNISKSPIILGKQTISPVFG----SPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 +P KS + + S ++ + +F+ F+EG SN++ L AA+ ++ Sbjct: 100 ESSAPAQLQARKSVHKTWENDPETLVDINHRSNVNPKHMFNNFVEGKSNQLGLAAAKQVS 159 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + Y NPLF++ GLGKTHLL A+ NA + +PN +VVY+ +E F+ A Sbjct: 160 DNPGSAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKA 214 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P Sbjct: 215 LQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPK 274 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+ ++ R++SR G++V + + E R +IL + + ED ++++ +EV +A+ Sbjct: 275 EISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKR 329 Query: 364 VTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH 421 + ++ REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ VA++ Sbjct: 330 LRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEY 387 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E+ Sbjct: 388 YKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQ 447 Query: 482 MLETDITLKKEVELLKRLIS 501 + E +K++ L R +S Sbjct: 448 LREESHDIKEDYSNLIRTLS 467 >gi|294638327|ref|ZP_06716580.1| DNA biosynthesis protein [Edwardsiella tarda ATCC 23685] gi|291088580|gb|EFE21141.1| DNA biosynthesis protein [Edwardsiella tarda ATCC 23685] Length = 467 Score = 252 bits (643), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 156/474 (32%), Positives = 262/474 (55%), Gaps = 24/474 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 ---FQEEHSRIQGVEILVRSVALPSVEK----TASSPSITKLSPINTNISKSPIILGKQT 149 F + + E+ + A PSV +SP+ T + + + + Sbjct: 67 LNDFCGADAPVLRFEVGSKPAA-PSVVSHHVGNGASPAPTSVRATSPTRPSWERVAAQPE 125 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 126 LS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 178 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 179 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 238 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 239 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 298 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 299 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 353 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 354 ITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 412 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 413 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|170766828|ref|ZP_02901281.1| chromosomal replication initiator protein DnaA [Escherichia albertii TW07627] gi|170124266|gb|EDS93197.1| chromosomal replication initiator protein DnaA [Escherichia albertii TW07627] Length = 467 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 157/475 (33%), Positives = 261/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 ---FQEEHSRIQGVEILVRSVALPSVEKTAS---SPS-ITKLSPINTN-ISKSPIILGKQ 148 F + E+ R V S AS +P+ + ++ P ++S Sbjct: 63 LTSFCGADAPQLRFEVGTRPVTKTSQAAVASNVTAPAQVAQMQPQRAAPAARSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|304405889|ref|ZP_07387547.1| chromosomal replication initiator protein DnaA [Paenibacillus curdlanolyticus YK9] gi|304345132|gb|EFM10968.1| chromosomal replication initiator protein DnaA [Paenibacillus curdlanolyticus YK9] Length = 448 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 151/463 (32%), Positives = 257/463 (55%), Gaps = 30/463 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++ V S ++ ++ + +WF+ K + ++ ++ PT F W+++RY Sbjct: 1 MDSHTPDMWQQVLSVIQTKLSKPSFDTWFKATK-AELDGEVLVVTAPTTFAAEWLESRY- 58 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TKL R E L R V + + + +P + P+ + P+ + Sbjct: 59 ---TKLV-----RTTMFEFLGRQVDVKFIIEENRAPEPAQPLPVAVQV---PVASDEP-- 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F L+ ++ F TF+ G++NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 106 ---FTHLLNPKYTFDTFVIGANNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 157 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P+ +V+Y+++E F F +AIRDN + ++ RNID+LLIDD+QF Sbjct: 158 HLMHAIGHYILDHNPSTKVMYISSEKFTNEFINAIRDNRGESFRNKYRNIDVLLIDDIQF 217 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ++ ++DR P E+ +L+ R+RSR + G+ + D Sbjct: 218 LAGKDGTQEEFFHTFNALHEERKQIIISSDRTPKEIPTLEERLRSRFEWGLITDIQAPDL 277 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + ++ E+ L I E ++++A + T+ REL+GA ++V S + Sbjct: 278 ETRIAILRKK---AKAEN--LEIPNEAMVYIANQIDTNIRELEGALIRVVAYSSLINEDI 332 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++ +A E L ++ + K + I+DIQ V + Y + + + +R + V PRQ+AMYL Sbjct: 333 SSHLAAEALKDIIPSSRPKMITIQDIQHKVGEFYGLRLEEFKARKRTKAVAYPRQIAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 S+ +T S P+IG FG RDHTTV+HA K+ L+TD L K Sbjct: 393 SRELTDYSLPKIGEAFGGRDHTTVIHAHEKITTQLKTDPDLYK 435 >gi|77456229|ref|YP_345734.1| chromosomal replication initiation protein [Pseudomonas fluorescens Pf0-1] gi|123772395|sp|Q3KKG1|DNAA_PSEPF RecName: Full=Chromosomal replication initiator protein DnaA gi|77380232|gb|ABA71745.1| chromosomal replication initiator protein DnaA [Pseudomonas fluorescens Pf0-1] Length = 507 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 225/390 (57%), Gaps = 18/390 (4%) Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSN 173 E+ + PS P+ S+ + +Q V G S L+ F F F+EG SN Sbjct: 128 TEEISEEPSRDSFDPMAGAASQQAPVRAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSN 187 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL Sbjct: 188 QLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLH 242 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ + Sbjct: 243 SERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQ 302 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + + K+ + Sbjct: 303 QVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVEL 357 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRI 411 + +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + + Sbjct: 358 PHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSV 416 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 ++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTT Sbjct: 417 DNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTT 476 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 477 VLHACRKINELKESDADIREDYKNLLRTLT 506 >gi|15804296|ref|NP_290335.1| chromosomal replication initiation protein [Escherichia coli O157:H7 EDL933] gi|15833891|ref|NP_312664.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. Sakai] gi|168748582|ref|ZP_02773604.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4113] gi|168753591|ref|ZP_02778598.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4401] gi|168759888|ref|ZP_02784895.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4501] gi|168772263|ref|ZP_02797270.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4196] gi|168779924|ref|ZP_02804931.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4076] gi|168786532|ref|ZP_02811539.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC869] gi|168798737|ref|ZP_02823744.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC508] gi|195936323|ref|ZP_03081705.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. EC4024] gi|208807676|ref|ZP_03250013.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4206] gi|208811867|ref|ZP_03253196.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4045] gi|208819691|ref|ZP_03260011.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4042] gi|209395729|ref|YP_002273228.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4115] gi|217325750|ref|ZP_03441834.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. TW14588] gi|254795705|ref|YP_003080542.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. TW14359] gi|261225855|ref|ZP_05940136.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261258900|ref|ZP_05951433.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O157:H7 str. FRIK966] gi|291285121|ref|YP_003501939.1| Chromosomal replication initiator protein dnaA [Escherichia coli O55:H7 str. CB9615] gi|21362461|sp|Q8XBZ3|DNAA_ECO57 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735804|sp|B5YXA4|DNAA_ECO5E RecName: Full=Chromosomal replication initiator protein DnaA gi|12518541|gb|AAG58899.1|AE005601_5 DNA biosynthesis; initiation of chromosome replication; can be transcription regulator [Escherichia coli O157:H7 str. EDL933] gi|13364112|dbj|BAB38060.1| replication initiation protein DnaA [Escherichia coli O157:H7 str. Sakai] gi|187771794|gb|EDU35638.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4196] gi|188016856|gb|EDU54978.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4113] gi|189002469|gb|EDU71455.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4076] gi|189358966|gb|EDU77385.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4401] gi|189369914|gb|EDU88330.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4501] gi|189373439|gb|EDU91855.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC869] gi|189378776|gb|EDU97192.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC508] gi|208727477|gb|EDZ77078.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4206] gi|208733144|gb|EDZ81831.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4045] gi|208739814|gb|EDZ87496.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4042] gi|209157129|gb|ACI34562.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4115] gi|209754108|gb|ACI75361.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754110|gb|ACI75362.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754112|gb|ACI75363.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754114|gb|ACI75364.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754116|gb|ACI75365.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|217321971|gb|EEC30395.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. TW14588] gi|254595105|gb|ACT74466.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O157:H7 str. TW14359] gi|290764994|gb|ADD58955.1| Chromosomal replication initiator protein dnaA [Escherichia coli O55:H7 str. CB9615] gi|320191198|gb|EFW65848.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC1212] gi|320639427|gb|EFX09042.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. G5101] gi|320644870|gb|EFX13906.1| chromosomal replication initiation protein [Escherichia coli O157:H- str. 493-89] gi|320650134|gb|EFX18630.1| chromosomal replication initiation protein [Escherichia coli O157:H- str. H 2687] gi|320655482|gb|EFX23417.1| chromosomal replication initiation protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661108|gb|EFX28544.1| chromosomal replication initiation protein [Escherichia coli O55:H7 str. USDA 5905] gi|326337249|gb|EGD61084.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1044] gi|326341620|gb|EGD65409.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1125] Length = 467 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 154/475 (32%), Positives = 260/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 ---FQEEHSRIQGVEILVRSVA-LPSVEKTASSPSITKLSPINTNISKSPIILGKQTI-- 150 F + E+ +SV P T++ + +++ + G + Sbjct: 63 LTSFCGADAPQLRFEVGTKSVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 151 --SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|226326920|ref|ZP_03802438.1| hypothetical protein PROPEN_00780 [Proteus penneri ATCC 35198] gi|225204757|gb|EEG87111.1| hypothetical protein PROPEN_00780 [Proteus penneri ATCC 35198] Length = 466 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 155/482 (32%), Positives = 265/482 (54%), Gaps = 37/482 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQHCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVREKYINNINAL 62 Query: 97 -------------FQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKS 141 F+ + G E + ++V P+V T + + S N S+ Sbjct: 63 LVDFCGSEVPSLRFEVGNKPASGRTTESIPKAVVHPTVNTTPTHSQPVRPSWDNQPASQL 122 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P + + ++P + F F+EG SN++A AA+ +A+ Y NPLF+ Sbjct: 123 PELNYRSNVNP--------KHKFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFL 169 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL A+ N+ ++R+ N +VVY+ +E F+ A+++N + K R++D Sbjct: 170 YGGTGLGKTHLLHAVGNSIMERKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVD 229 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G+ Sbjct: 230 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGL 289 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + E R +IL + + ++ ++ + +EV +A+ + ++ REL+GA N+++ Sbjct: 290 TVAIEPPELETRVAIL-----MKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIA 344 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V Sbjct: 345 NANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVA 403 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R Sbjct: 404 RPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRT 463 Query: 500 IS 501 +S Sbjct: 464 LS 465 >gi|260870433|ref|YP_003236835.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O111:H- str. 11128] gi|257766789|dbj|BAI38284.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O111:H- str. 11128] Length = 467 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 155/475 (32%), Positives = 259/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 ---FQEEHSRIQGVEILVRSVA-LPSVEKTASSPSITKLSPINTNISKSPIILGKQTI-- 150 F + E+ + V P T++ + +++ + G I Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNIPA 122 Query: 151 --SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL I + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----IKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|303240057|ref|ZP_07326578.1| chromosomal replication initiator protein DnaA [Acetivibrio cellulolyticus CD2] gi|302592326|gb|EFL62053.1| chromosomal replication initiator protein DnaA [Acetivibrio cellulolyticus CD2] Length = 443 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 147/455 (32%), Positives = 265/455 (58%), Gaps = 34/455 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+N++ + +W + ++ S+ +N ++L+VP F K +++RY I ++ + Sbjct: 16 LQNELTEISFNTWIKTIEPLSLYNNTLNLAVPAEFNKGILESRYSALIKNAIKQTTYKEY 75 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 + +V PS E +I K TN +++ + T+ V L+ ++ F Sbjct: 76 TINFVV-----PSQE------NIDKY----TNQAEAN---NEDTLVSV----LNPKYTFD 113 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + +K+ P Sbjct: 114 TFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIGHFVLKQNP 168 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +L+V+Y+++E F +AI+D+ + RNID+LLIDD+QF+ GK Q EF H Sbjct: 169 SLKVLYVSSEKFTNELINAIKDDKNEEFRSKYRNIDILLIDDIQFIAGKERTQEEFFHTF 228 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ++ ++D+ P E+ +L+ R+RSR + G+ + D E R +IL+ + +Q Sbjct: 229 NALYEANKQIILSSDKSPKEIVTLEDRLRSRFEWGLIADMQAPDIETRIAILRKK---AQ 285 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNT 403 E+ L++ E+++ +A + ++ REL+GA N+++ S +T ++A E L +++T Sbjct: 286 LEN--LDVPNEIMVFIAEKIASNIRELEGALNRVIAYSSLTENDITVDLATEALKDILST 343 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + + + IQ VA+++++ +D S RR R V PRQ+AM+L + +T S P+IG Sbjct: 344 SKVRAINCNTIQDAVARYFDLRPDDFKSKRRSRDVAYPRQIAMFLCRELTDMSLPKIGNA 403 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 FG RDHTTV+HA K+ + ++++ ++ + LK+ Sbjct: 404 FGGRDHTTVIHACEKIVEEVQSNSETRRAINELKK 438 >gi|78221229|ref|YP_382976.1| chromosomal replication initiation protein [Geobacter metallireducens GS-15] gi|123742956|sp|Q39ZS3|DNAA_GEOMG RecName: Full=Chromosomal replication initiator protein DnaA gi|78192484|gb|ABB30251.1| chromosomal replication initiator protein, DnaA [Geobacter metallireducens GS-15] Length = 450 Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 153/474 (32%), Positives = 260/474 (54%), Gaps = 40/474 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI-- 93 E ++ S L + + +W + ++F N + L P F++ ++ YL I Sbjct: 2 EDVWLQAQSNLAKVLTHQTFTTWIEPIRFAGAHKNTLLLEAPNQFIRDRVRESYLPMILE 61 Query: 94 -TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT----KLSPINTNISKSPIILGKQ 148 + + H +++ VA EKTA SP + +L P+ + + Sbjct: 62 SVRSLTDSHFQVE------LQVAARQQEKTAKSPRKSHTEDELGPVES-----------E 104 Query: 149 TISPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +P F + L++++ F TF+ G SN+ A AA S+A + Y NPLFI+ VGL Sbjct: 105 KCAPAEFSTNLNAKYTFDTFVCGGSNQFAHAAALSVANNPAGKY-----NPLFIYGGVGL 159 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL AI N + + RV + T+E FM + +R ++ R +DLLLIDD Sbjct: 160 GKTHLLTAIGNQVLTKNRKARVCFYTSEKFMNELINCLRYQKMEQFRNKFRKMDLLLIDD 219 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + Sbjct: 220 IQFIAGKERTQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQP 279 Query: 327 HDYEMRFSILKNRLAISQKEDPK-LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 D E + +IL S+K D + + ++V + +A + +T+ REL+G +L S Sbjct: 280 PDTETKVAIL------SKKADSDGIRLPDDVALFLASSASTNVRELEGMLIRLGAVASLT 333 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T ++A E+L ++ +TK++ +E IQ+ VA H+NI +L S++R++ +V PRQ+ Sbjct: 334 GKNITLDMAREVLKDII-VDKTKEVTVEMIQKYVADHFNIKVAELKSDKRLKALVVPRQI 392 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 A+YL + +T S+P+IG +FG +DH+T++H+V+KV+K+L D LK +E L++ Sbjct: 393 AIYLCRDLTKASYPDIGEKFGGKDHSTIIHSVKKVDKLLSQDFELKSTIETLRK 446 >gi|85709428|ref|ZP_01040493.1| chromosomal replication initiator protein [Erythrobacter sp. NAP1] gi|85688138|gb|EAQ28142.1| chromosomal replication initiator protein [Erythrobacter sp. NAP1] Length = 486 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 163/496 (32%), Positives = 274/496 (55%), Gaps = 43/496 (8%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVP 77 ++ + D+ + VN + + +S L+ +G +++ W + ++ S+ + L +P Sbjct: 13 RSADDDLMEDAEAVNLAADWADISQGLRKDLGHQLHSQWIKPIQVGSINKETGTLDLFLP 72 Query: 78 TNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTN 137 T F W+K+R+ + + ++ ++ V I V P +L + + Sbjct: 73 TEFSANWVKDRFHDRLQLAWKIVRGDVRNVNIQVH-------------PGRRQLPELRID 119 Query: 138 ISKSPIILGKQTISPVFGS----------PLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 + P G I+ G+ LD F F+ G +N +A AAQ +A + Sbjct: 120 DGRRPANDGASAIAVAAGTIGDAGFTSSVGLDPSLTFQAFVTGEANVLACNAAQRMAATE 179 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 ++ PL++ A+ G GKTHLL AI +A ++ P R+ Y +AE FM F A++ Sbjct: 180 QPQFS-----PLYLKAATGQGKTHLLHAIGHAFLQAHPRARIFYCSAERFMVEFVQALKA 234 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 N + K LR+ DLLL+DD+QF+ GK Q E + +++LL K++V AADR P L+ Sbjct: 235 NQMIEFKARLRSFDLLLVDDIQFIIGKASAQEELLYTIDALLAEGKRLVFAADRAPQALD 294 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 ++PR+ SRL G+ + D E+R IL+++L+ L++ E+V+ +ART+T Sbjct: 295 GVEPRLLSRLSMGLVADIQAADIELRKKILESKLS----RFAPLSVPEDVIDFLARTITR 350 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + REL G N+L+ ++A + E+ A+E L+ +++ +++ I++IQR V + Y Sbjct: 351 NVRELVGGLNKLI---AYAQLTGQEVSLQLAEEQLTDILSANR-RRITIDEIQRTVCQFY 406 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I R+++ S RR R VVRPRQVAMYLSK++TPRS+PEIGR+FG RDH+TV+HAVR +E + Sbjct: 407 RIDRSEMSSKRRARAVVRPRQVAMYLSKVLTPRSYPEIGRKFGGRDHSTVIHAVRLIEDL 466 Query: 483 LETDITLKKEVELLKR 498 + D + +V L R Sbjct: 467 RQRDADMDGDVRSLLR 482 >gi|238793143|ref|ZP_04636771.1| Chromosomal replication initiator protein dnaA [Yersinia intermedia ATCC 29909] gi|238727516|gb|EEQ19042.1| Chromosomal replication initiator protein dnaA [Yersinia intermedia ATCC 29909] Length = 462 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/476 (32%), Positives = 264/476 (55%), Gaps = 29/476 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSP--SITKLSPINTNISKSPIILGK 147 + R + G + +R+ + P V + S+P +T+ +P+ + SP Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAIRAHSHP-VTASVSAPVAPVTRSAPVRPSWDSSP----- 116 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 117 AQPEHSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 171 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 172 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 292 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 346 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 347 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 405 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 406 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|22127981|ref|NP_671404.1| chromosomal replication initiation protein [Yersinia pestis KIM 10] gi|21961126|gb|AAM87655.1|AE014012_12 DNA biosynthesis protein [Yersinia pestis KIM 10] Length = 466 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/479 (32%), Positives = 264/479 (55%), Gaps = 35/479 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRIQGVEILVRSVALPS----------VEKTASSP--SITKLSPINTNISKSPII 144 + G E+ + + S V + S+P +T+ +P+ + SP Sbjct: 67 LND----FCGTEVPLLRFEVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDNSP-- 120 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 121 -AQPELS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 172 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LL Sbjct: 173 TGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 232 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 233 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 292 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 293 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 347 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 348 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 406 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|45443728|ref|NP_995267.1| chromosomal replication initiation protein [Yersinia pestis biovar Microtus str. 91001] gi|51598227|ref|YP_072418.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis IP 32953] gi|108810133|ref|YP_654049.1| chromosomal replication initiation protein [Yersinia pestis Antiqua] gi|108814115|ref|YP_649882.1| chromosomal replication initiation protein [Yersinia pestis Nepal516] gi|145597325|ref|YP_001161400.1| chromosomal replication initiation protein [Yersinia pestis Pestoides F] gi|150260968|ref|ZP_01917696.1| chromosomal replication initiator protein [Yersinia pestis CA88-4125] gi|153950668|ref|YP_001403095.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis IP 31758] gi|162419763|ref|YP_001608448.1| chromosomal replication initiation protein [Yersinia pestis Angola] gi|165926099|ref|ZP_02221931.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. F1991016] gi|166009506|ref|ZP_02230404.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. E1979001] gi|166213287|ref|ZP_02239322.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401560|ref|ZP_02307054.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422851|ref|ZP_02314604.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425478|ref|ZP_02317231.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218931074|ref|YP_002348949.1| chromosomal replication initiation protein [Yersinia pestis CO92] gi|229839804|ref|ZP_04459963.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841889|ref|ZP_04462045.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229896766|ref|ZP_04511929.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Pestoides A] gi|229904654|ref|ZP_04519765.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Nepal516] gi|270488365|ref|ZP_06205439.1| chromosomal replication initiator protein DnaA [Yersinia pestis KIM D27] gi|294505625|ref|YP_003569687.1| chromosomal replication initiation protein [Yersinia pestis Z176003] gi|21362472|sp|Q8Z9U7|DNAA_YERPE RecName: Full=Chromosomal replication initiator protein DnaA gi|61212542|sp|Q663T2|DNAA_YERPS RecName: Full=Chromosomal replication initiator protein DnaA gi|123073045|sp|Q1CCJ8|DNAA_YERPN RecName: Full=Chromosomal replication initiator protein DnaA gi|123371953|sp|Q1C0B8|DNAA_YERPA RecName: Full=Chromosomal replication initiator protein DnaA gi|166215370|sp|A4TGL5|DNAA_YERPP RecName: Full=Chromosomal replication initiator protein DnaA gi|167016907|sp|A7FPB7|DNAA_YERP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735866|sp|A9R5R5|DNAA_YERPG RecName: Full=Chromosomal replication initiator protein DnaA gi|45438598|gb|AAS64144.1| chromosomal replication initiator protein [Yersinia pestis biovar Microtus str. 91001] gi|51591509|emb|CAH23181.1| chromosomal replication initiator protein [Yersinia pseudotuberculosis IP 32953] gi|108777763|gb|ABG20282.1| chromosomal replication initiator protein DnaA [Yersinia pestis Nepal516] gi|108782046|gb|ABG16104.1| chromosomal replication initiator protein DnaA [Yersinia pestis Antiqua] gi|115349685|emb|CAL22666.1| chromosomal replication initiator protein [Yersinia pestis CO92] gi|145209021|gb|ABP38428.1| chromosomal replication initiator protein [Yersinia pestis Pestoides F] gi|149290376|gb|EDM40453.1| chromosomal replication initiator protein [Yersinia pestis CA88-4125] gi|152962163|gb|ABS49624.1| chromosomal replication initiator protein DnaA [Yersinia pseudotuberculosis IP 31758] gi|162352578|gb|ABX86526.1| chromosomal replication initiator protein DnaA [Yersinia pestis Angola] gi|165921959|gb|EDR39136.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991428|gb|EDR43729.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. E1979001] gi|166205585|gb|EDR50065.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. B42003004] gi|166958243|gb|EDR55264.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048942|gb|EDR60350.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055492|gb|EDR65285.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678772|gb|EEO74877.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Nepal516] gi|229691228|gb|EEO83281.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229696170|gb|EEO86217.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700204|gb|EEO88240.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Pestoides A] gi|270336869|gb|EFA47646.1| chromosomal replication initiator protein DnaA [Yersinia pestis KIM D27] gi|294356084|gb|ADE66425.1| chromosomal replication initiation protein [Yersinia pestis Z176003] gi|320017427|gb|ADW00999.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 462 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/479 (32%), Positives = 264/479 (55%), Gaps = 35/479 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALPS----------VEKTASSP--SITKLSPINTNISKSPII 144 + G E+ + + S V + S+P +T+ +P+ + SP Sbjct: 63 LND----FCGTEVPLLRFEVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDNSP-- 116 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 117 -AQPELS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 168 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LL Sbjct: 169 TGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 228 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 229 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 288 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 289 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 343 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 344 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 402 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 403 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|146309668|ref|YP_001174742.1| chromosomal replication initiator protein DnaA [Enterobacter sp. 638] gi|145316544|gb|ABP58691.1| chromosomal replication initiator protein DnaA [Enterobacter sp. 638] Length = 483 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 155/477 (32%), Positives = 260/477 (54%), Gaps = 29/477 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 23 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 81 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT----- 149 + G + L V V +T ++ +P ++ II ++ Sbjct: 82 LND----FCGADAPQLRFEVGTKPVTQTVRE-TVNVAAPAQIHVPTPRIIQPARSGWDNV 136 Query: 150 ---ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ G Sbjct: 137 PAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTG 191 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLID Sbjct: 192 LGKTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLID 251 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 252 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIE 311 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 312 PPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 366 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+ Sbjct: 367 GRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQM 425 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 426 AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 482 >gi|297537198|ref|YP_003672967.1| chromosomal replication initiator protein DnaA [Methylotenera sp. 301] gi|297256545|gb|ADI28390.1| chromosomal replication initiator protein DnaA [Methylotenera sp. 301] Length = 471 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 159/482 (32%), Positives = 256/482 (53%), Gaps = 27/482 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + SR + ++ + +W + L V N V L P F+ W+K R+L+ I + Sbjct: 2 ENFWPTCLSRFEQELSTQQFNTWIKPLH-AEVEGNAVRLVAPNRFVMQWVKERFLKKIEQ 60 Query: 96 LFQEEHSRIQGVEILV------RSVALPSVEKTAS---SPSI----TKLSPINTNISKSP 142 + H ++ ++ S P+ ++T+ S +I +K+S I+ IS S Sbjct: 61 FAHDLHLANIKIDFVISDSDQKNSAEKPAAKQTSKVEISTNINLMESKISQISQAISTSK 120 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 I K + S S L+S F F ++ G +N++A AA +AE Y NPLFI+ Sbjct: 121 NINKKTSESSKVSSGLNSAFNFDNYVTGRANQLARAAAIQVAENPGTAY-----NPLFIY 175 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHLLQAI N K P+ ++ YL AE ++ A K ++DL Sbjct: 176 GGVGLGKTHLLQAIGNELKKHNPDAKIRYLHAERYVTDVVKAYEHKAFDEFKRQYHSLDL 235 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF K Q EF + NSL+++ KQ+V D P E+ +D R+R+R G++ Sbjct: 236 LLIDDIQFFAKKTRTQEEFFYAFNSLIEAKKQIVITCDTYPKEIIDVDERLRTRFSWGLT 295 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + EMR +IL + + E LN+ E+V +A+ + +S REL+GA N+++ Sbjct: 296 VAVEPPELEMRVAIL-----LKKAEAVNLNLPEDVAFFIAKQIRSSVRELEGALNRIIAM 350 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 F + +A + L L+ +++ +E+IQ+ VA +Y I ++ S +R R R Sbjct: 351 AKFTGHSIDVHLAKDALRDLIAV-RGRQVTMENIQKTVADYYKIKVAEMYSKKRTRNFAR 409 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM LS+ +T SFPEIG FG R HTTV+HA +V+ + + D T +++ L ++I Sbjct: 410 PRQIAMALSRELTNHSFPEIGEAFGGRHHTTVMHACDEVDLLRQNDPTFTRDISFLVQVI 469 Query: 501 SE 502 + Sbjct: 470 RD 471 >gi|296131551|ref|YP_003638798.1| chromosomal replication initiator protein DnaA [Thermincola sp. JR] gi|296030129|gb|ADG80897.1| chromosomal replication initiator protein DnaA [Thermincola potens JR] Length = 451 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 263/454 (57%), Gaps = 27/454 (5%) Query: 49 QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE 108 QV + +W + +K + ++ + + VP +F K W+++RY + I + S I E Sbjct: 20 QVSKPSFETWLKYIKPVNFVNETMIIEVPNDFAKDWLESRYTDLIKSIL----SDILNKE 75 Query: 109 ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 + V + +LP+ S L N +I K+ + +S + L+ ++ F TF+ Sbjct: 76 VSV-TFSLPNEIIDVSD----YLPEYNIDIKKN----YNEDLS--ISTHLNPKYTFDTFV 124 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G+SNR A AA ++AE + Y NPLFI+ VGLGKTHL+QAI + ++++ +LR Sbjct: 125 VGNSNRFAHAAALAVAEAPAKAY-----NPLFIYGGVGLGKTHLMQAIGHYILEQEYSLR 179 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVY+++E F ++IRD+ ++ ++ RN+D+LLIDD+QFL GK Q EF H N+L Sbjct: 180 VVYVSSEKFTNELINSIRDDKTVDFRNKYRNMDILLIDDIQFLAGKERTQEEFFHTFNAL 239 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + + Sbjct: 240 YEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRKKAQLEN--- 296 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGET 406 L + +V++++A + ++ REL+GA +++ S +T ++A E L ++ Sbjct: 297 --LMVPNDVMLYIANRIQSNIRELEGALIRVMAYSSLTNSEITTDLAAEALKDIIPMQAP 354 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K++ IE IQ++VA ++++ D + +R R V PRQ+AMYL + +T S P+IG FG Sbjct: 355 KQINIEIIQKIVADYFSMRVEDFKAKKRTRAVAFPRQIAMYLCRELTDNSLPKIGEEFGG 414 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RDHTTV+HA K+ L DI L+ ++ L+ I Sbjct: 415 RDHTTVIHAHEKISNDLNNDIKLQSIIKELQHRI 448 >gi|89074702|ref|ZP_01161160.1| chromosomal replication initiation protein [Photobacterium sp. SKA34] gi|89049466|gb|EAR55027.1| chromosomal replication initiation protein [Photobacterium sp. SKA34] Length = 466 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/478 (32%), Positives = 259/478 (54%), Gaps = 29/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ H + L P F+ W++++YL I +L Sbjct: 4 SLWLQCLQRLQEELPATEFSMWLRPLQAELNDHTLT-LFAPNRFVLDWVRDKYLNNINRL 62 Query: 97 FQEE--------HSRIQGVEILVRSVALPSVEKT--ASSPSITKLSPINTNISKSPIILG 146 E H + + + T S P++ ++ + SP+ Sbjct: 63 LNEFCGADAPSLHFEVGSKPVAAPPQPVAPPVFTLPKSKPAVEPQPAVHHEPAPSPV--- 119 Query: 147 KQTISPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 Q SP + S ++ + F+ F+EG SN++ L A + +++ Y NPLF++ Sbjct: 120 -QNESPGGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAY-----NPLFLYGGT 173 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 174 GLGKTHLLHAVGNAIANRKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 233 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAI 293 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED + + +EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 EPPELETRVAIL-----MKKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANF 348 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQ Sbjct: 349 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQ 407 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 465 >gi|150387854|ref|YP_001317903.1| chromosomal replication initiation protein [Alkaliphilus metalliredigens QYMF] gi|167016895|sp|A6TJ76|DNAA_ALKMQ RecName: Full=Chromosomal replication initiator protein DnaA gi|149947716|gb|ABR46244.1| chromosomal replication initiator protein DnaA [Alkaliphilus metalliredigens QYMF] Length = 448 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 157/475 (33%), Positives = 269/475 (56%), Gaps = 36/475 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N I+ + +K ++ + +W + ++ S+ + + L VP +F + + RY I Sbjct: 4 NLPQIWEKAINLIKTELTEVSFNTWVKPIQAISLDNETLVLGVPNDFTQGILNARYNTLI 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + ++ S+ V I+V PS E+ + +I N +S SP+ Sbjct: 64 SNAVKQVTSKNYEVHIVV-----PSEERVGDTQNI--------NARRS------NAQSPI 104 Query: 154 FG-SPL--DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 G SPL + ++ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 105 MGNSPLILNPKYTFDTFVIGNSNRFAHAASVAVAESPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F ++IRD+ + ++ RN+D+LL+DD+QF Sbjct: 160 HLMNAIGHYILANNPKAKVVYVSSETFTNELINSIRDDRNVEFRNRYRNVDVLLVDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L +S KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 220 IAGKERTQEEFFHTFNALHESNKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + +Q E+ + + +EV H+A+ + ++ REL+GA ++V S + Sbjct: 280 ETRIAILRKK---AQMEN--IYVPDEVTAHIAKKIQSNIRELEGALIRIVAYSSLTNSEV 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L + T + + + + I+ +V+ H++I D S +R R++ PRQVAMYL Sbjct: 335 TVELASEALKEIF-TSKPRLLNVPLIKEVVSNHFSIKLEDFDSKKRTRSISYPRQVAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRLISE 502 ++ +T S P+IG FG RDHTTV+HA K+ + +D LK +++ ++K L S+ Sbjct: 394 TRELTDLSLPKIGDEFGGRDHTTVMHAHSKIVNEINSDSDLKNKLDAIIKELKSD 448 >gi|182411827|ref|YP_001816893.1| chromosomal replication initiator protein DnaA [Opitutus terrae PB90-1] gi|177839041|gb|ACB73293.1| chromosomal replication initiator protein DnaA [Opitutus terrae PB90-1] Length = 467 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 252/472 (53%), Gaps = 19/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ V K DV+ WF+ + + + L VP +F WI + YL+ IT+ Sbjct: 9 SLWETVKCDFKELFPEDVFQMWFEPMVCLEATEDSMVLGVPNDFAAIWIHDNYLDLITQR 68 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITK-LSPINTNISKSPIILGKQTISPVFG 155 + R+ V + A A+ + T L P + + +P G+ V Sbjct: 69 LRLTAGRLVNVTLKKSDAAQAPAPAFANHRATTAALEPAHRGRTATPRRNGRYDDRSVAA 128 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ R F TF+ GS+N++A AA ++A+ + Y NPLFI+ GLGKTHL+ A Sbjct: 129 ATLNPRNTFETFVVGSNNQMAHAAALAVAQAPAQAY-----NPLFIYGDTGLGKTHLMHA 183 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I +A ++ P+ RV YL+ E F F A+++N + R++D+LLIDD+QFL GK Sbjct: 184 IGHAILRNNPDARVAYLSTEKFTNEFIQALQENSLTKFRQRYRHVDVLLIDDVQFLAGKE 243 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 IQ EF H N L +S KQVV ++DR SE++ L+ R+ SR + G+ + D+E R + Sbjct: 244 RIQEEFFHTFNDLFESGKQVVLSSDRRASEIQKLESRLVSRFEWGLPADIQAPDFETRLA 303 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 IL+++ A K ++ +L +A+ ++ + R L+GA L+ S++ + L Sbjct: 304 ILRSKAACM-----KFDLPAPILNFIAQNISKNIRRLEGA---LIKVASYSALTSKPLDL 355 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + LL ++ + IE IQ+ VA HY I +D+ S RR + PRQ+AMYL++ Sbjct: 356 ATTEMLLQDVLMEQAQNVLTIETIQKRVADHYQIRHSDMTSKRRPNNIAIPRQIAMYLTR 415 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S EIG FG RDH TV+HA + V+ M+E D T + ++ LK +S+ Sbjct: 416 TLTKHSLQEIGEAFGGRDHGTVIHACKAVDNMMEQDSTTRGSIDFLKAQLSK 467 >gi|218297059|ref|ZP_03497736.1| chromosomal replication initiator protein DnaA [Thermus aquaticus Y51MC23] gi|218242614|gb|EED09151.1| chromosomal replication initiator protein DnaA [Thermus aquaticus Y51MC23] Length = 441 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 267/471 (56%), Gaps = 42/471 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ V ++ + Y +WF+R++ + ++ L+VPT+F WIK Y I + Sbjct: 6 EAVWQHVLEHIRRNITEVEYHTWFERIRPLGIREGVLELAVPTSFALDWIKRHYAPLIQE 65 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS--PIILGKQTISPV 153 +++ E+LV +P + P+ +I ++ GK ++P Sbjct: 66 ALGLLGAQVPRFELLV----VPGAAQ-----------PVQVDIFQAVPQADQGKSKLNP- 109 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 110 -------KYTFENFVVGPNNNLAHAAAVAVAESPGKAY-----NPLFIYGGVGLGKTHLM 157 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ ++ KR P+L++ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ G Sbjct: 158 HAVGHSVAKRFPSLKIEYVSTETFTNELINAIREDRMAEFRERYRSVDLLLVDDIQFIAG 217 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D E R Sbjct: 218 KERTQEEFFHTFNALFEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETR 277 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +ILK E L I E+VL ++AR VT++ REL+GA ++V S + LT + Sbjct: 278 IAILK-----MNAEQRGLRIGEDVLEYIARQVTSNIRELEGALMRVVAYASLNGVELTRQ 332 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + LS + E ++ ++I R+VA+H+ + DL+ R + VV PRQ+AM+L + Sbjct: 333 VAAKALSDIFAPREV-EVDPQEIVRVVAEHFGLRPEDLVGGGRRKEVVLPRQMAMFLVRE 391 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S PEIG+ FG RDHTTVL+A++KV+++ E+D +EV+ + R + E Sbjct: 392 LTRASLPEIGQLFGGRDHTTVLYAIQKVQELSESD----REVQAILRTLKE 438 >gi|226952830|ref|ZP_03823294.1| DNA replication initiator protein [Acinetobacter sp. ATCC 27244] gi|294648702|ref|ZP_06726162.1| DNA-directed DNA replication initiator protein [Acinetobacter haemolyticus ATCC 19194] gi|226836451|gb|EEH68834.1| DNA replication initiator protein [Acinetobacter sp. ATCC 27244] gi|292825377|gb|EFF84120.1| DNA-directed DNA replication initiator protein [Acinetobacter haemolyticus ATCC 19194] Length = 466 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 159/473 (33%), Positives = 269/473 (56%), Gaps = 22/473 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V +++ L P + +I++ +LE I+ L Sbjct: 4 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-DDVMRLYAPNPYWTRYIQDNHLELISILA 62 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLS-PINTNISK-SPIILGKQTIS 151 ++ R++ VEILV S L S E+ A++ + S PI T I K + ++ Q + Sbjct: 63 EQLSEGRVRQVEILVDSRPGTILASSEQPATTTAALNTSTPIPTKIKKEADLVQPSQNAN 122 Query: 152 PVFGS-PLDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L+ F FS F+EG SN++A T + + ++ + + NPLF++ GLGK Sbjct: 123 KIPKKRQLNPLFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 178 THLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIH 237 Query: 270 FLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D Sbjct: 238 LLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPD 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 298 IETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGTA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM Sbjct: 353 IDLDVVRESLKDVLAI-RARTISVENIQRVVSEYFRIPLKELIGPKRTRIYARPRQLAMG 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 412 LARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFNEDYKNLLRLL 464 >gi|330806658|ref|YP_004351120.1| Chromosomal replication initiator protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374766|gb|AEA66116.1| Chromosomal replication initiator protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 508 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 225/390 (57%), Gaps = 18/390 (4%) Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSN 173 V + + PS P+ S+ + +Q V G S L+ F F F+EG SN Sbjct: 129 VAEVSEEPSRDSFDPMAGASSQQAPVRAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSN 188 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL Sbjct: 189 QLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLH 243 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ + Sbjct: 244 SERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQ 303 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + + K+ + Sbjct: 304 QVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVEL 358 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRI 411 + +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + + Sbjct: 359 PHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSV 417 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 ++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTT Sbjct: 418 DNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTT 477 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 478 VLHACRKINELKESDADIREDYKNLLRTLT 507 >gi|90581124|ref|ZP_01236923.1| chromosomal replication initiation protein [Vibrio angustum S14] gi|90437645|gb|EAS62837.1| chromosomal replication initiation protein [Vibrio angustum S14] Length = 466 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 258/477 (54%), Gaps = 27/477 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ H + L P F+ W++++YL I +L Sbjct: 4 SLWLQCLQRLQEELPATEFSMWLRPLQAELNDHTLT-LFAPNRFVLDWVRDKYLNNINRL 62 Query: 97 FQE---EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E + E+ + VA ++ K P + P + + SPV Sbjct: 63 LNEFCGADAPSLHFEVGSKPVAAAPQPVAPPVFTLPKSKPA---VEPQPAVQHEPEPSPV 119 Query: 154 -------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + S ++ + F+ F+EG SN++ L A + +++ Y NPLF++ G Sbjct: 120 QNESPGGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAY-----NPLFLYGGTG 174 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ NA R+PN +VVY+ +E F+ A+++N K R++D LLID Sbjct: 175 LGKTHLLHAVGNAIANRKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLID 234 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 235 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIE 294 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + ED + + +EV +A+ + ++ REL+GA N+++ +F Sbjct: 295 PPELETRVAIL-----MKKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFT 349 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+ Sbjct: 350 GRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQM 408 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 465 >gi|260595830|ref|YP_003208401.1| Chromosomal replication initiator protein dnaA [Cronobacter turicensis z3032] gi|260215007|emb|CBA26668.1| Chromosomal replication initiator protein dnaA [Cronobacter turicensis z3032] Length = 486 Score = 251 bits (640), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 153/474 (32%), Positives = 259/474 (54%), Gaps = 26/474 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 29 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 87 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + R + G + L ++ P+ + + + +P+ P Sbjct: 88 LNDFCGSDAPLLRFEVGTKPLTQTTTAPASQTVRPAQAAPAAAPVRPAWDNVP-----AP 142 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 143 AEPSYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 197 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 198 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 257 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 258 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 317 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 318 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 372 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 373 ITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 431 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 432 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 485 >gi|59710616|ref|YP_203392.1| chromosomal replication initiation protein [Vibrio fischeri ES114] gi|71151809|sp|Q5E8Z2|DNAA_VIBF1 RecName: Full=Chromosomal replication initiator protein DnaA gi|59478717|gb|AAW84504.1| chromosomal replication initiator protein DnaA [Vibrio fischeri ES114] Length = 469 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 160/479 (33%), Positives = 264/479 (55%), Gaps = 28/479 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL +I L Sbjct: 4 SLWLQCLQRLQEELPSAEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNSINSL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEK-TASSPSITKLSPINTNISKS---PIILGKQT 149 E E+ + V+ P+V K TA+ + +P +S P + Sbjct: 63 LNEFCGNDIPTLRFEVGSKPVSAPAVPKQTAADVAAATSAPAQLQARQSVHKP--WESEG 120 Query: 150 ISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 PV S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AGPVAADLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAY-----NPLFLYGG 175 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ NA + +P+ RVVY+ +E F+ A+++N K R++D LL Sbjct: 176 TGLGKTHLLHAVGNAIVDSKPDARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 235 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 236 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 295 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ + Sbjct: 296 IEPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANAN 350 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 351 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADLLSKRRSRSVARPR 409 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM LSK +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 410 QLAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYSNLIRTLS 468 >gi|262167100|ref|ZP_06034815.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC27] gi|262024486|gb|EEY43172.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC27] Length = 444 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 156/451 (34%), Positives = 253/451 (56%), Gaps = 39/451 (8%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQE-EHSRIQGV--EILVRSVALP--------- 117 N + L P F+ W++++YL I +L E + + + E+ R V P Sbjct: 13 NTLTLFAPNRFVLDWVRDKYLNNINRLLMEFSGNDVPNLRFEVGSRPVVAPKPAPVRTAA 72 Query: 118 SVEKTASSPS-ITKLSPINT---NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 V +S+P+ + + PI+ + S + I + ++P + F+ F+EG SN Sbjct: 73 DVAAESSAPAQLAQRKPIHKTWDDDSAAADITHRSNVNP--------KHKFNNFVEGKSN 124 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++ L AA+ +++ Y NPLF++ GLGKTHLL A+ NA + PN +VVY+ Sbjct: 125 QLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMH 179 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ + Sbjct: 180 SERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQ 239 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ED ++++ Sbjct: 240 QIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHL 294 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMR 410 +EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + Sbjct: 295 PDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVT 352 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHT Sbjct: 353 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHT 412 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TVLHA RK+E++ E +K++ L R +S Sbjct: 413 TVLHACRKIEQLREESHDIKEDYSNLIRTLS 443 >gi|163802133|ref|ZP_02196028.1| chromosomal replication initiation protein [Vibrio sp. AND4] gi|159173938|gb|EDP58748.1| chromosomal replication initiation protein [Vibrio sp. AND4] Length = 468 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/444 (34%), Positives = 249/444 (56%), Gaps = 24/444 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG---VEILVRSVALPSVEKTASSP 126 N + L P F+ W++++YL +I +L QE E+ R VA P T + Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEHCGHDLPNLRFEVGSRPVAAPKPAPTRTPA 95 Query: 127 SITKLSPINTNI-SKSPIIL----GKQTISPV-FGSPLDSRFVFSTFIEGSSNRVALTAA 180 + S + ++ P+ Q I+ + S ++ + F+ F+EG SN++ L AA Sbjct: 96 DVAAESSAPAQLQARKPVHKTWDDDAQAIANINHRSNVNPKHKFNNFVEGKSNQLGLAAA 155 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 + +++ Y NPLF++ GLGKTHLL A+ NA + PN +VVY+ +E F+ Sbjct: 156 RQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQD 210 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +D Sbjct: 211 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSD 270 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+ ++ R++SR G++V + + E R +IL + + E ++++ +EV Sbjct: 271 RYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEAHQIHLADEVAFF 325 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ Sbjct: 326 IAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKT 383 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA R Sbjct: 384 VAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACR 443 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K++++ E +K++ L R +S Sbjct: 444 KIQQLREESHDIKEDYSNLIRTLS 467 >gi|300721090|ref|YP_003710358.1| DNA replication initiator protein [Xenorhabdus nematophila ATCC 19061] gi|297627575|emb|CBJ88094.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Xenorhabdus nematophila ATCC 19061] Length = 462 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 155/482 (32%), Positives = 263/482 (54%), Gaps = 41/482 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVREKYINNINLL 62 Query: 97 FQEEHSRIQGVEI-LVR--------------SVALPSVEKTASSPSITKLSPINTNISKS 141 + G E+ L+R S + + A++PS + + P N+ Sbjct: 63 LND----FCGPEVPLLRFEVGNKPVSPNQSASQKIIADMPVATAPSSSSVRPSWDNVKTQ 118 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P + + ++P + F F+EG SN++A AA+ +A+ Y NPLF+ Sbjct: 119 PELSYRSNVNP--------KHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFL 165 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL A+ N+ + R+ N +VVY+ +E F+ A+++N K R++D Sbjct: 166 YGGTGLGKTHLLHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 225 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G+ Sbjct: 226 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGL 285 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + E R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ Sbjct: 286 TVAIEPPELETRVAIL-----MKKADENQIQLPGEVAFFIAKRLRSNVRELEGALNRVIA 340 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V Sbjct: 341 NANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVA 399 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R Sbjct: 400 RPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRT 459 Query: 500 IS 501 +S Sbjct: 460 LS 461 >gi|170018062|ref|YP_001723016.1| chromosomal replication initiation protein [Escherichia coli ATCC 8739] gi|189044638|sp|B1IYP2|DNAA_ECOLC RecName: Full=Chromosomal replication initiator protein DnaA gi|169752990|gb|ACA75689.1| chromosomal replication initiator protein DnaA [Escherichia coli ATCC 8739] Length = 467 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 260/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 ---FQEEHSRIQGVEILVRSVA-LPSVEKTASSPSITKLSPINTNISKSPIILGKQTI-- 150 F + E+ + V P T++ + +++ + + G + Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSMRSGWDNVPA 122 Query: 151 --SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|271498579|ref|YP_003331604.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech586] gi|270342134|gb|ACZ74899.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech586] Length = 462 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 158/481 (32%), Positives = 265/481 (55%), Gaps = 39/481 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYINNINGL 62 Query: 97 FQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPI-NTNIS--------KSPIILG 146 + G++ L+R + S P+ ++P+ N N + SP+ Sbjct: 63 LND----FCGMDAPLLRF-------EVGSKPATPVVAPVGNHNATVAAPQTRVASPVRPS 111 Query: 147 KQTISP----VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 +T S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 112 WETPSAPAEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLY 166 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D Sbjct: 167 GGTGLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDA 226 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++ Sbjct: 227 LLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLT 286 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ Sbjct: 287 VAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIAN 341 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V R Sbjct: 342 ANFTGRSITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVAR 400 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R + Sbjct: 401 PRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 460 Query: 501 S 501 S Sbjct: 461 S 461 >gi|327482925|gb|AEA77332.1| Chromosomal replication initiator protein DnaA [Vibrio cholerae LMA3894-4] Length = 458 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 159/476 (33%), Positives = 260/476 (54%), Gaps = 40/476 (8%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE----- 99 RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L E Sbjct: 3 RLQEELPAAEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNNINRLLMEFSGND 61 Query: 100 -------EHSRIQGVEILVRSVALPSVEKTASSPS-ITKLSPINT---NISKSPIILGKQ 148 SR V V +S+P+ + + PI+ + S + I + Sbjct: 62 VPNLRFEVGSRPVVAPKPVPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSAAADITHRS 121 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 ++P + F+ F+EG SN++ L AA+ +++ Y NPLF++ GLG Sbjct: 122 NVNP--------KHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLG 168 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 169 KTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 228 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 229 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPP 288 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 289 ELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 343 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 PI T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 344 PI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLA 401 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 402 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 457 >gi|260857887|ref|YP_003231778.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O26:H11 str. 11368] gi|257756536|dbj|BAI28038.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O26:H11 str. 11368] Length = 467 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/475 (32%), Positives = 259/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 ---FQEEHSRIQGVEILVRSVA-LPSVEKTASSPSITKLSPINTNISKSPIILGKQTI-- 150 F + E+ + V P T++ + +++ + G I Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNIPA 122 Query: 151 --SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|90019650|ref|YP_525477.1| chromosomal replication initiation protein [Saccharophagus degradans 2-40] gi|122996680|sp|Q21PW4|DNAA_SACD2 RecName: Full=Chromosomal replication initiator protein DnaA gi|89949250|gb|ABD79265.1| chromosomal replication initiator protein DnaA [Saccharophagus degradans 2-40] Length = 524 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 172/534 (32%), Positives = 267/534 (50%), Gaps = 83/534 (15%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV-LHNIVHLSVPTNFLKAWIKNRYLETIT 94 ES + S L++++ + +W + L+ N +HL P F+ W+ +++ I Sbjct: 5 ESAWEQCVSSLQSELPAQQFNTWIRPLRVQQAEASNQLHLIAPNRFVLDWVNDKFKSRID 64 Query: 95 KLFQE-EHSRIQGVEILV---RSVAL---------------------------------- 116 +L +H I VEI V RS + Sbjct: 65 ELLSSADHHPITSVEISVAPRRSTSFETNQGVAARQKRQQEAPRQNIASSQPSNSYSRQP 124 Query: 117 --PSVEKTASSP--------------------SITKLSPINTNISKSPIILGKQTISPVF 154 P+VE A S + + P N N P+ GK V Sbjct: 125 QQPAVEMPAESQMAQVELLPAAPPAPLNNGYNTESFAQPYNDN----PMGQGKVDKVDVE 180 Query: 155 G-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 G S L+ F+F F+ G SN++ L AA +AE Y NPLFI+ VGLGK Sbjct: 181 GGLQHKSNLNPTFIFDNFVVGKSNQLGLAAATQVAENPGGSY-----NPLFIYGGVGLGK 235 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ A+ NA R+P +VVYL +E F+ A++ N + K R++D LLIDD+Q Sbjct: 236 THLMHAVGNALCVRKPGAKVVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQ 295 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F GK Q EF H N+LL+ +Q++ DR P E+ L+ R++SR G++V + + Sbjct: 296 FFAGKERSQEEFFHTFNALLEGGQQIILTCDRYPKEINGLEERLKSRFGWGLTVAIEPPE 355 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +ILK + E + + +A+ + ++ REL+GA +++ F Sbjct: 356 LETRVAILKRK-----AEQVGAPLPNDAAFFIAQRIRSNVRELEGALKRVIANAHFTGRD 410 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 ++ E+ E L L+ + + + I++IQR+VA++Y I +DL S RR R+V RPRQVAMY Sbjct: 411 ISVELVREALKDLLAL-QDRLVSIDNIQRVVAEYYKIKVSDLHSKRRSRSVARPRQVAMY 469 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+++M+E+D ++++V+ L R ++ Sbjct: 470 LAKDLTHHSLPEIGEAFGGRDHTTVLHACRKIKEMIESDADIREDVKNLLRTLT 523 >gi|121998017|ref|YP_001002804.1| chromosomal replication initiation protein [Halorhodospira halophila SL1] gi|166214674|sp|A1WWE0|DNAA_HALHL RecName: Full=Chromosomal replication initiator protein DnaA gi|121589422|gb|ABM62002.1| chromosomal replication initiator protein DnaA [Halorhodospira halophila SL1] Length = 449 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 158/472 (33%), Positives = 255/472 (54%), Gaps = 32/472 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +S+++ +L+ ++ +W + L+ H + + + L P F+ W+++ + I + Sbjct: 3 DSLWSACLQQLEREIPEQQLNTWIRPLQAH-LEGDALRLYAPNRFVLDWVRDNFSARIGE 61 Query: 96 LFQE----EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 L E EH R VE+ + S P + A+ + + ++ + P+ Sbjct: 62 LLAEIRPDEHLR---VELEIGSPPTPDQREAATGATRAAPAQRSSEPRQRPV-------- 110 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 S L+ F F +F+EG SN++A A+ +A+ Y NPLF++ VGLGKTH Sbjct: 111 ---DSNLNPGFTFDSFVEGKSNQLARAASMQVADNPGGAY-----NPLFLYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ A+ NA +P RV+YL +E F+ A++ N K RN+D LLIDD+QF Sbjct: 163 LMHAVGNAIRTARPEARVLYLHSERFVAEMVKALQHNAINEFKRHYRNLDALLIDDIQFF 222 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+LL+S +QV+ DR P E+ L+ R++SR G++V + + E Sbjct: 223 AGKERSQEEFFHTFNALLESEQQVIMTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +ILK++ AI D + +EV VA+ + ++ REL+GA ++ F + Sbjct: 283 TRVAILKSK-AIRDGVD----LPDEVAFFVAKRLRSNVRELEGALRRITANAQFTGRAID 337 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + A E L L+ + K + I++IQ+ VA +Y I DLLS RR R++ RPR +AM L+ Sbjct: 338 VDFAKEALRDLLAL-QDKLVTIDNIQKTVAAYYKIRVGDLLSKRRSRSITRPRHMAMVLA 396 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG FG RDH+TVLHA R ++ ++E D L ++ + L R +S Sbjct: 397 KELTSHSLPEIGDAFGGRDHSTVLHACRNIKSLIEDDARLAEDYDNLLRTLS 448 >gi|88813024|ref|ZP_01128266.1| chromosomal replication initiator protein DnaA [Nitrococcus mobilis Nb-231] gi|88789657|gb|EAR20782.1| chromosomal replication initiator protein DnaA [Nitrococcus mobilis Nb-231] Length = 432 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 161/467 (34%), Positives = 246/467 (52%), Gaps = 41/467 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ +V +W + L+ ++ L P F+ W+++ + + I +L Sbjct: 4 SLWKGCLRRLEREVPDQQLNTWIRPLQAQED-GKLLRLLAPNRFVLDWVRDHFADRIQEL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 V + P KL I TN++ + T+ P S Sbjct: 63 L---------------------VGQCPDCPPKLKLE-IGTNLAPTRAT----TVHPS-SS 95 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F TF+EG SN++A A+ + E Y NPLFI+ VGLGKTHL+ AI Sbjct: 96 LLNPNFTFDTFVEGKSNQLARAASSQLVENPGGAY-----NPLFIYGGVGLGKTHLMHAI 150 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA ++R P+ V+YL +E F+ A++ N K R ++ LLIDD+QF GK Sbjct: 151 GNALLQRLPDAEVLYLHSERFVGDMVKALQHNAINEFKRYYRGVNALLIDDIQFFAGKER 210 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ +QVV + DR P E++ L+ R++SR G++V + ++E R +I Sbjct: 211 SQEEFFHTFNALLEGQQQVVMSCDRYPKEVQGLEERLKSRFGWGLTVAIEPPEFETRAAI 270 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + E P EV +A+ + ++ REL+GA +++ F +T E Sbjct: 271 LMTKANLEGIELP-----HEVAFFIAKRIRSNVRELEGALRRVIANSYFTGERITVEFTK 325 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L L+ + K + IE+IQR VA++Y I DLLS RR R++ RPRQ+AM L+K +T Sbjct: 326 GALRDLLALHD-KLVTIENIQRTVAEYYKIRLTDLLSKRRSRSITRPRQIAMALAKSLTS 384 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RKV ++++ D L ++ L R +S Sbjct: 385 HSLPEIGNAFGGRDHTTVLHACRKVAELMKADTRLAEDYNNLLRTLS 431 >gi|254784274|ref|YP_003071702.1| chromosomal replication initiation protein [Teredinibacter turnerae T7901] gi|259645262|sp|C5BKL9|DNAA_TERTT RecName: Full=Chromosomal replication initiator protein DnaA gi|237685666|gb|ACR12930.1| chromosomal replication initiator protein DnaA [Teredinibacter turnerae T7901] Length = 593 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 147/389 (37%), Positives = 224/389 (57%), Gaps = 39/389 (10%) Query: 138 ISKSPIILGKQTISPV----FGSPLDSR-------------------FVFSTFIEGSSNR 174 I PII +T+SP FGS L SR F+F F+ G SN+ Sbjct: 218 IESRPII---ETVSPRDIQDFGSQLTSRVKKKDVEGGIQHKHNLNTTFIFDNFVVGKSNQ 274 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 + L AA +AE Y NPLFI+ VGLGKTHL+ A+ NA ++R+P RVVYL + Sbjct: 275 LGLAAASQVAENPGGAY-----NPLFIYGGVGLGKTHLMHAVGNALVQRKPGARVVYLHS 329 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F+ A++ N + K R++D LLIDD+QF GK Q EF H N+LL+ +Q Sbjct: 330 ERFVADMVKALQLNAISDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQ 389 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ D+ P E+ L+ R++SR G++V + + E R +ILK + E ++ + Sbjct: 390 IILTCDKYPKEINGLEERLKSRFGWGLTVAIEPPELETRVAILKRK-----AESSRMPLP 444 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIE 412 ++ +A+ + ++ REL+GA +++ F ++ E+ E L L+ + + + I+ Sbjct: 445 DDAAFFIAQRIRSNVRELEGALKRVIANAQFTQRSISVELVREALKDLLAL-QDRLVSID 503 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQR+VA++Y I +DL S RR R+V RPRQVAMYL+K +T S PEIG FG RDHTTV Sbjct: 504 NIQRVVAEYYKIKVSDLHSKRRSRSVARPRQVAMYLAKDLTHHSLPEIGDAFGGRDHTTV 563 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 LHA RK+ + E+D ++++V+ L R ++ Sbjct: 564 LHACRKIRDLQESDADIREDVKNLLRTLT 592 >gi|261346742|ref|ZP_05974386.1| DNA biosynthesis protein [Providencia rustigianii DSM 4541] gi|282565142|gb|EFB70677.1| DNA biosynthesis protein [Providencia rustigianii DSM 4541] Length = 465 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 262/477 (54%), Gaps = 28/477 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYINNINEL 62 Query: 97 FQEE--------HSRIQGVEILVRSVALPS-VEKTASSPSITKLS-PINTNISKSPIILG 146 + H + + V V+ + V + PS T S P+ + S Sbjct: 63 LNDFCGSDAPALHFEVGNKPLTVAPVSTQTRVSNNNAMPSFTMPSAPVKPSWDNS----N 118 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K + S ++ + F F+EG SN++A AA+ +AE Y NPLF++ G Sbjct: 119 KVQPDVAYRSNVNPKHTFDNFVEGKSNQLARAAARQVAENPGGAY-----NPLFLYGGTG 173 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ N+ ++ + N RVVY+ +E F+ A+++N K R++D LLID Sbjct: 174 LGKTHLLHAVGNSIMQHKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLID 233 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIE 293 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 PPELETRVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 348 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+ Sbjct: 349 GRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQM 407 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|117923319|ref|YP_863936.1| chromosomal replication initiator protein DnaA [Magnetococcus sp. MC-1] gi|166214679|sp|A0L3I7|DNAA_MAGSM RecName: Full=Chromosomal replication initiator protein DnaA gi|117607075|gb|ABK42530.1| chromosomal replication initiator protein DnaA [Magnetococcus sp. MC-1] Length = 447 Score = 250 bits (639), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 159/460 (34%), Positives = 250/460 (54%), Gaps = 33/460 (7%) Query: 49 QVGPDVYASWFQRLKFHS-VLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 QV V+ +W + LK V + +F W+K RY + ++ E+ G Sbjct: 15 QVSVQVFEAWIRPLKAGGEVGDGQFQVYAANDFSADWVKKRYGGLLEEILSEQ----LGE 70 Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTF 167 + + A P++EK +S + T ++P+ + G+ F S LD R+ F +F Sbjct: 71 PVTLLFAADPALEKPVASKTQT-VTPVQSG--------GETGDQENFHSGLDPRYTFDSF 121 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 + G N+ AA +AE + Y NPLFIH VGLGKTH++QAI N ++ P+ Sbjct: 122 VVGGCNQFVHAAAARVAEAPAAAY-----NPLFIHGGVGLGKTHVMQAIGNRVLEIDPDK 176 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 RV+Y+++E FM + +++R + K++ R++D+LL+DD+QF+ GK Q EF H N+ Sbjct: 177 RVLYISSENFMTQLINSLRFKRVFDFKENFRSVDVLLVDDIQFIAGKKATQEEFFHTFNA 236 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 L ++ KQ+V AD P E+E L+ R+RSR G+ + D E R +IL+ + Sbjct: 237 LYEAKKQIVMTADSFPHEIEHLEERLRSRFGMGLVADMQPPDLETRVAILQKKAG----- 291 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVN 402 L + +EV +A V T+ REL+GA L+ ++A + +T + E L +V Sbjct: 292 SEGLRLADEVAFFLADAVQTNVRELEGA---LIRVSAYASLTGKPITMALVKESLKDIVR 348 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 G+ + + +E IQ+ VA +Y + DL SN R R PRQ+AMYL K +T S+PEIG Sbjct: 349 -GQDRAVTVEQIQKTVANYYKVKVTDLCSNSRSRIYSHPRQIAMYLCKQLTQHSYPEIGH 407 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 RFG RDHTTVL+AV +V+K + L E+ LK ++ + Sbjct: 408 RFGGRDHTTVLYAVSQVDKKQGSTPALADELASLKSMLQK 447 >gi|313199778|ref|YP_004038436.1| chromosomal replication initiator protein dnaa [Methylovorus sp. MP688] gi|312439094|gb|ADQ83200.1| chromosomal replication initiator protein DnaA [Methylovorus sp. MP688] Length = 469 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 155/484 (32%), Positives = 260/484 (53%), Gaps = 33/484 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ ++I R + ++ + +W + L F + H + L P F++ W+K+R+L I Sbjct: 2 ENFWSICLGRFEQELSAQQFNTWIKPLHFETHNHTL-RLFAPNRFVQQWVKDRFLPRIQN 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSI-TKLSPINTNISKSPIILGKQTISPV- 153 L +E +E+ ++ PS++K ++P + T + + + +P + P Sbjct: 61 LAEELIQHPVEIELGLQD---PSMKKQMAAPVVKTASADLKVEEAAAPFLQEPPAKKPAA 117 Query: 154 ----------FGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 G+P L+S F F F+ G +N++A AA +AE Y NPLFI Sbjct: 118 KNVESKKSKPHGNPSGLNSAFNFDNFVTGRANQLARAAALQVAENPGTAY-----NPLFI 172 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHLLQAI N +P+ ++ YL AE ++ A K ++D Sbjct: 173 YGGVGLGKTHLLQAIGNHLKMNRPDAKIRYLHAERYVSDVVKAYELKAFDEFKRQYHSLD 232 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF K Q EF + NSL+++ KQ++ D P E+ +D R+R+R G+ Sbjct: 233 LLLIDDIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPKEIVDVDERLRTRFSWGL 292 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + + E+ K ++E+V +A+ V +S REL+GA N++V Sbjct: 293 TVAVEPPELEMRVAIL-----LKKAEEAKFVLHEDVAFFIAKQVRSSVRELEGALNRIVA 347 Query: 381 RHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +F PI +A + L L+ +++ +E+IQ+ VA +Y I ++ S +R R Sbjct: 348 MANFTGNPI-DVHLAKDALKDLIAV-RGRQITMENIQKTVADYYKIKVAEMYSKKRSRNF 405 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM L++ +T SFPEIG FG R HTTV+HA +VE++ + D + +++ L + Sbjct: 406 ARPRQIAMALARELTNHSFPEIGEAFGSRHHTTVMHACEEVEQLRQNDPNVARDIAFLTQ 465 Query: 499 LISE 502 +I + Sbjct: 466 VIRD 469 >gi|253997714|ref|YP_003049777.1| chromosomal replication initiator protein DnaA [Methylovorus sp. SIP3-4] gi|253984393|gb|ACT49250.1| chromosomal replication initiator protein DnaA [Methylovorus sp. SIP3-4] Length = 469 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 155/484 (32%), Positives = 260/484 (53%), Gaps = 33/484 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ ++I R + ++ + +W + L F + H + L P F++ W+K+R+L I Sbjct: 2 ENFWSICLGRFEQELSAQQFNTWIKPLHFETHNHTL-RLFAPNRFVQQWVKDRFLPRIQN 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSI-TKLSPINTNISKSPIILGKQTISPV- 153 L +E +E+ ++ PS++K ++P + T + + + +P + P Sbjct: 61 LAEELIQHPVEIELGLQD---PSMKKQMAAPVVKTASADLKVEEAAAPFLQETPAKKPAA 117 Query: 154 ----------FGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 G+P L+S F F F+ G +N++A AA +AE Y NPLFI Sbjct: 118 KNVESKKSKPHGNPSGLNSAFNFDNFVTGRANQLARAAALQVAENPGTAY-----NPLFI 172 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHLLQAI N +P+ ++ YL AE ++ A K ++D Sbjct: 173 YGGVGLGKTHLLQAIGNHLKMNRPDAKIRYLHAERYVSDVVKAYELKAFDEFKRQYHSLD 232 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF K Q EF + NSL+++ KQ++ D P E+ +D R+R+R G+ Sbjct: 233 LLLIDDIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPKEIVDVDERLRTRFSWGL 292 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + + E+ K ++E+V +A+ V +S REL+GA N++V Sbjct: 293 TVAVEPPELEMRVAIL-----LKKAEEAKFVLHEDVAFFIAKQVRSSVRELEGALNRIVA 347 Query: 381 RHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +F PI +A + L L+ +++ +E+IQ+ VA +Y I ++ S +R R Sbjct: 348 MANFTGNPI-DVHLAKDALKDLIAV-RGRQITMENIQKTVADYYKIKVAEMYSKKRSRNF 405 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM L++ +T SFPEIG FG R HTTV+HA +VE++ + D + +++ L + Sbjct: 406 ARPRQIAMALARELTNHSFPEIGEAFGSRHHTTVMHACEEVEQLRQNDPNVARDIAFLTQ 465 Query: 499 LISE 502 +I + Sbjct: 466 VIRD 469 >gi|149912068|ref|ZP_01900659.1| chromosomal replication initiation protein [Moritella sp. PE36] gi|149804864|gb|EDM64901.1| chromosomal replication initiation protein [Moritella sp. PE36] Length = 460 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 157/474 (33%), Positives = 262/474 (55%), Gaps = 27/474 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ SRL+N++ ++ W + LK + + + L P F+ W++++YL +IT L Sbjct: 4 SLWQQCLSRLQNELSATEFSMWLRPLK-AELTDSTLTLYAPNRFVLDWVRDKYLNSITAL 62 Query: 97 FQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV- 153 F E G + IL + T ++ I ++ + + + P ++ SP Sbjct: 63 FDE----FCGADAPILRFDIGGKPTTITQTTTKIDRV--VAAKVMRFPQTDPWESSSPQQ 116 Query: 154 ----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S ++ + F F+EG SN++A AAQ +A Y NPLF++ GLGK Sbjct: 117 PTINHRSNVNLTYTFENFVEGKSNQLARAAAQQVASNPGGAY-----NPLFLYGGTGLGK 171 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N ++PN +V+Y+ +E F+ A+++N K+ R++D LLIDD+Q Sbjct: 172 THLLHAVGNGIKAQKPNAKVIYMHSERFVQDMVKALQNNAIEAFKNYYRSVDALLIDDIQ 231 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E++ ++ R++SR G+++ + + Sbjct: 232 FFAKKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPE 291 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + S +++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 292 LETRVAILMRKAVESN-----IHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 346 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQVAM Sbjct: 347 INIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADLLSKRRSRSVARPRQVAMA 405 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+ ++ E + +K++ L R +S Sbjct: 406 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIVQLKEENHDIKEDYSNLIRTLS 459 >gi|331007619|ref|ZP_08330761.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] gi|330418559|gb|EGG93083.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] Length = 584 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 135/349 (38%), Positives = 216/349 (61%), Gaps = 15/349 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F +F+EG SN++ L AAQ + E Y NPLFI+ VGLGKTHL+ A Sbjct: 247 SALNKSFTFDSFVEGKSNQMGLAAAQQVVENPGGSY-----NPLFIYGGVGLGKTHLMHA 301 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +R PN ++VYL +E F+ A++ N + K R++D LLIDD+QF GK Sbjct: 302 VGNEMARRNPNAKIVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGKD 361 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ DR P + +L+ R++SR G+++ + + E R + Sbjct: 362 RSQEEFFHTFNALLEGNQQIILTCDRYPKVINNLEERLKSRFGWGLTIEVEPPELETRAA 421 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL R A + K++++ + +A+ V ++ REL+GA +++ +F PI T ++ Sbjct: 422 ILLKRAA-----EIKIDLSYDAAFFIAQRVRSNVRELEGALKRVIANATFTQRPI-TVDL 475 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ + K++ I +IQ++V ++Y + +DLLS RR R+V RPRQVAM L+K + Sbjct: 476 VKEALKDLLAL-QDKQVSIGNIQKVVGEYYKVKMSDLLSKRRSRSVARPRQVAMSLAKEL 534 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK++++ + D ++++++ L+RL++ Sbjct: 535 TNHSLPEIGDAFGGRDHTTVLHACRKIKELCDVDTEIEQDLKNLQRLLT 583 >gi|324111599|gb|EGC05580.1| chromosomal replication initiator protein DnaA [Escherichia fergusonii B253] gi|325499509|gb|EGC97368.1| chromosomal replication initiation protein [Escherichia fergusonii ECD227] Length = 466 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 156/479 (32%), Positives = 258/479 (53%), Gaps = 31/479 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS--- 151 + G + L V V +T + + ++P P T S Sbjct: 63 L----TSFCGADAPQLRFEVGTKPVTQTLKAAASNTVAPAQA-AQVQPQRAAPSTRSGWD 117 Query: 152 -------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 118 NVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 172 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 173 TGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 232 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 233 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 292 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 293 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 347 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 348 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 406 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|218551232|ref|YP_002385024.1| chromosomal replication initiation protein [Escherichia fergusonii ATCC 35469] gi|218358774|emb|CAQ91431.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia fergusonii ATCC 35469] Length = 470 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 156/479 (32%), Positives = 258/479 (53%), Gaps = 31/479 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS--- 151 + G + L V V +T + + ++P P T S Sbjct: 67 L----TSFCGADAPQLRFEVGTKPVTQTLKAAASNTVAPAQA-AQVQPQRAAPSTRSGWD 121 Query: 152 -------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 122 NVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 176 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 177 TGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 236 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 237 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 296 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 297 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 351 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 352 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 410 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 469 >gi|312792284|ref|YP_004025207.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179424|gb|ADQ39594.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 454 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 142/360 (39%), Positives = 217/360 (60%), Gaps = 13/360 (3%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 KQ P + L+ ++ F TF+ G++NR+A AA ++AE T NPLFI+ VG Sbjct: 101 KQDEKPEITTSLNPKYTFETFVVGNNNRLAHAAALAVAETPPGERT---YNPLFIYGGVG 157 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LLID Sbjct: 158 LGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTNEFRLKYRNVDVLLID 217 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 218 DIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQ 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSF 384 D+E R +IL + + P + +L +A + T+ REL+GA N+ L + Sbjct: 278 PPDFETRIAILSKKCQLEGTPVP-----QHILEFIASKIETNIRELEGALNKILAYSKLM 332 Query: 385 API--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 AP +T E+A++ L ++T K++ IEDIQ VA ++ I D S+RR R V PR Sbjct: 333 APDKEITLELAEKALKEFIDTNTKKELTIEDIQAEVASYFGIKLEDFKSSRRSRNVAFPR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL-KRLIS 501 Q+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ TD + VE + KRLI+ Sbjct: 393 QIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINTDSNTRNAVETIKKRLIN 452 >gi|238750289|ref|ZP_04611791.1| Chromosomal replication initiator protein dnaA [Yersinia rohdei ATCC 43380] gi|238711522|gb|EEQ03738.1| Chromosomal replication initiator protein dnaA [Yersinia rohdei ATCC 43380] Length = 462 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 157/476 (32%), Positives = 265/476 (55%), Gaps = 29/476 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSP--SITKLSPINTNISKSPIILGK 147 + R + G + VR+ P V + S+P + + +P+ + SP + Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAVRAHNHP-VTASVSAPVAPVIRSAPVRPSWDSSP---AQ 118 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 119 PELS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 171 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 172 GKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 231 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 232 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 291 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 292 PELETRVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 346 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 347 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMA 405 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 406 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|146295086|ref|YP_001178857.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408662|gb|ABP65666.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 454 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 140/351 (39%), Positives = 216/351 (61%), Gaps = 13/351 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F TF+ G++NR+A AA ++AE T NPLFI+ VGLGKTHL+ A Sbjct: 110 TTLNPKYTFETFVVGNNNRLAHAAALAVAETPPGEKT---YNPLFIYGGVGLGKTHLMHA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + +K P+ +V+Y+T+E F +AIRD + RN+D+LLIDD+QFL GK Sbjct: 167 IGHHVLKLYPDTKVMYVTSEIFTNELIAAIRDEKTDEFRMKYRNVDVLLIDDIQFLGGKE 226 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ + D+E R + Sbjct: 227 RTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIA 286 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPI--LTAE 391 IL + + P + +L +A + T+ REL+GA N+ L + AP +T E Sbjct: 287 ILSKKCQLEGTPVP-----QHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLE 341 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A++ L ++T K++ IEDIQ VA ++NI D S+RR R V PRQ+AMYL++ Sbjct: 342 LAEKALKEFIDTNTKKELTIEDIQAEVAGYFNIKLEDFKSSRRSRNVAFPRQIAMYLARE 401 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRLIS 501 +T S P+IG FG +DHTTVLHA K+++++ D ++ VE L KRLI+ Sbjct: 402 LTNVSLPKIGEAFGGKDHTTVLHACEKIKELINKDTNIRNTVENLKKRLIN 452 >gi|320539854|ref|ZP_08039513.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Serratia symbiotica str. Tucson] gi|320030040|gb|EFW12060.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Serratia symbiotica str. Tucson] Length = 460 Score = 250 bits (638), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 155/480 (32%), Positives = 258/480 (53%), Gaps = 39/480 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQAQ-LSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 -------------FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 F+ I + SV P+ ++PS P N + P Sbjct: 63 LNDFCGTDAPLLRFEVGSKPISQIISQTLSVNAPAAPVARTAPS----RPSWDNAAPQPE 118 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + + ++P + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 119 LSYRSNVNP--------KHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYG 165 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 GLGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D L Sbjct: 166 GTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDAL 225 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 226 LIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 285 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ Sbjct: 286 AIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANA 340 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RP Sbjct: 341 NFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARP 399 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R++S Sbjct: 400 RQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHGIKEDFSNLIRILS 459 >gi|312877904|ref|ZP_07737849.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor lactoaceticus 6A] gi|311795330|gb|EFR11714.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor lactoaceticus 6A] Length = 454 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 142/360 (39%), Positives = 217/360 (60%), Gaps = 13/360 (3%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 KQ P + L+ ++ F TF+ G++NR+A AA ++AE T NPLFI+ VG Sbjct: 101 KQDEKPEITTSLNPKYTFETFVVGNNNRLAHAAALAVAETPPGERT---YNPLFIYGGVG 157 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LLID Sbjct: 158 LGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLLID 217 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 218 DIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQ 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSF 384 D+E R +IL + + P + +L +A + T+ REL+GA N+ L + Sbjct: 278 PPDFETRIAILSKKCQLEGTPVP-----QHILEFIASKIETNIRELEGALNKILAYSKLM 332 Query: 385 API--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 AP +T E+A++ L ++T K++ IEDIQ VA ++ I D S+RR R V PR Sbjct: 333 APDKEITLELAEKALKEFIDTNTKKELTIEDIQAEVASYFGIKLEDFKSSRRSRNVAFPR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL-KRLIS 501 Q+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ TD + VE + KRLI+ Sbjct: 393 QIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINTDSNTRNAVETIKKRLIN 452 >gi|16131570|ref|NP_418157.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] gi|74314016|ref|YP_312435.1| chromosomal replication initiation protein [Shigella sonnei Ss046] gi|89110311|ref|AP_004091.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. W3110] gi|91213224|ref|YP_543210.1| chromosomal replication initiation protein [Escherichia coli UTI89] gi|157155055|ref|YP_001465187.1| chromosomal replication initiation protein [Escherichia coli E24377A] gi|157163182|ref|YP_001460500.1| chromosomal replication initiation protein [Escherichia coli HS] gi|170679718|ref|YP_001746030.1| chromosomal replication initiation protein [Escherichia coli SMS-3-5] gi|188495189|ref|ZP_03002459.1| chromosomal replication initiator protein DnaA [Escherichia coli 53638] gi|191165774|ref|ZP_03027612.1| chromosomal replication initiator protein DnaA [Escherichia coli B7A] gi|191170447|ref|ZP_03032000.1| chromosomal replication initiator protein DnaA [Escherichia coli F11] gi|193063799|ref|ZP_03044886.1| chromosomal replication initiator protein DnaA [Escherichia coli E22] gi|193069150|ref|ZP_03050107.1| chromosomal replication initiator protein DnaA [Escherichia coli E110019] gi|194428054|ref|ZP_03060598.1| chromosomal replication initiator protein DnaA [Escherichia coli B171] gi|194431303|ref|ZP_03063596.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1012] gi|194435690|ref|ZP_03067793.1| chromosomal replication initiator protein DnaA [Escherichia coli 101-1] gi|209921179|ref|YP_002295263.1| chromosomal replication initiation protein [Escherichia coli SE11] gi|215489042|ref|YP_002331473.1| chromosomal replication initiation protein [Escherichia coli O127:H6 str. E2348/69] gi|218556267|ref|YP_002389181.1| chromosomal replication initiation protein [Escherichia coli IAI1] gi|218560777|ref|YP_002393690.1| chromosomal replication initiation protein [Escherichia coli S88] gi|218691990|ref|YP_002400202.1| chromosomal replication initiation protein [Escherichia coli ED1a] gi|218697424|ref|YP_002405091.1| chromosomal replication initiation protein [Escherichia coli 55989] gi|218702551|ref|YP_002410180.1| chromosomal replication initiation protein [Escherichia coli IAI39] gi|218707348|ref|YP_002414867.1| chromosomal replication initiation protein [Escherichia coli UMN026] gi|237703502|ref|ZP_04533983.1| chromosomal replication initiation protein [Escherichia sp. 3_2_53FAA] gi|238902792|ref|YP_002928588.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli BW2952] gi|253771436|ref|YP_003034267.1| chromosomal replication initiation protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038919|ref|ZP_04872971.1| chromosomal replication initiation protein [Escherichia sp. 1_1_43] gi|254163653|ref|YP_003046761.1| chromosomal replication initiation protein [Escherichia coli B str. REL606] gi|256021280|ref|ZP_05435145.1| chromosomal replication initiation protein [Shigella sp. D9] gi|256025567|ref|ZP_05439432.1| chromosomal replication initiation protein [Escherichia sp. 4_1_40B] gi|260846513|ref|YP_003224291.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O103:H2 str. 12009] gi|293407342|ref|ZP_06651264.1| dnaA [Escherichia coli FVEC1412] gi|293417175|ref|ZP_06659802.1| chromosomal replication initiator protein DnaA [Escherichia coli B185] gi|293464026|ref|ZP_06664440.1| chromosomal replication initiator protein DnaA [Escherichia coli B088] gi|298383083|ref|ZP_06992678.1| chromosomal replication initiator protein dnaA [Escherichia coli FVEC1302] gi|301028495|ref|ZP_07191735.1| replication initiator protein DnaA [Escherichia coli MS 196-1] gi|306815945|ref|ZP_07450083.1| chromosomal replication initiation protein [Escherichia coli NC101] gi|307140402|ref|ZP_07499758.1| chromosomal replication initiation protein [Escherichia coli H736] gi|307313229|ref|ZP_07592854.1| chromosomal replication initiator protein DnaA [Escherichia coli W] gi|312967888|ref|ZP_07782100.1| chromosomal replication initiator protein DnaA [Escherichia coli 2362-75] gi|331660044|ref|ZP_08360982.1| replication initiation protein DnaA [Escherichia coli TA206] gi|331665352|ref|ZP_08366253.1| replication initiation protein DnaA [Escherichia coli TA143] gi|331670546|ref|ZP_08371385.1| replication initiation protein DnaA [Escherichia coli TA271] gi|331685426|ref|ZP_08386012.1| replication initiation protein DnaA [Escherichia coli H299] gi|332282511|ref|ZP_08394924.1| chromosomal replication initiation protein [Shigella sp. D9] gi|399394|sp|P03004|DNAA_ECOLI RecName: Full=Chromosomal replication initiator protein DnaA gi|123387748|sp|Q1R4N5|DNAA_ECOUT RecName: Full=Chromosomal replication initiator protein DnaA gi|123745913|sp|Q3YWB2|DNAA_SHISS RecName: Full=Chromosomal replication initiator protein DnaA gi|167016899|sp|A7ZTQ8|DNAA_ECO24 RecName: Full=Chromosomal replication initiator protein DnaA gi|167016900|sp|A8A6G3|DNAA_ECOHS RecName: Full=Chromosomal replication initiator protein DnaA gi|226735803|sp|B7MGC3|DNAA_ECO45 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735805|sp|B7NR04|DNAA_ECO7I RecName: Full=Chromosomal replication initiator protein DnaA gi|226735806|sp|B7M553|DNAA_ECO8A RecName: Full=Chromosomal replication initiator protein DnaA gi|226735807|sp|B7NF19|DNAA_ECOLU RecName: Full=Chromosomal replication initiator protein DnaA gi|226735808|sp|B6I3T5|DNAA_ECOSE RecName: Full=Chromosomal replication initiator protein DnaA gi|226735809|sp|B1LL27|DNAA_ECOSM RecName: Full=Chromosomal replication initiator protein DnaA gi|254777900|sp|B7UMG9|DNAA_ECO27 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777901|sp|B7L846|DNAA_ECO55 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777902|sp|B7N2E7|DNAA_ECO81 RecName: Full=Chromosomal replication initiator protein DnaA gi|259645248|sp|C4ZYX9|DNAA_ECOBW RecName: Full=Chromosomal replication initiator protein DnaA gi|145760|gb|AAB59149.1| DnaA protein (gtg start codon) [Escherichia coli] gi|2367267|gb|AAC76725.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] gi|73857493|gb|AAZ90200.1| DnaA [Shigella sonnei Ss046] gi|85676342|dbj|BAE77592.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K12 substr. W3110] gi|91074798|gb|ABE09679.1| chromosomal replication initiator protein DnaA [Escherichia coli UTI89] gi|157068862|gb|ABV08117.1| chromosomal replication initiator protein DnaA [Escherichia coli HS] gi|157077085|gb|ABV16793.1| chromosomal replication initiator protein DnaA [Escherichia coli E24377A] gi|170517436|gb|ACB15614.1| chromosomal replication initiator protein DnaA [Escherichia coli SMS-3-5] gi|188490388|gb|EDU65491.1| chromosomal replication initiator protein DnaA [Escherichia coli 53638] gi|190904098|gb|EDV63809.1| chromosomal replication initiator protein DnaA [Escherichia coli B7A] gi|190909255|gb|EDV68841.1| chromosomal replication initiator protein DnaA [Escherichia coli F11] gi|192930514|gb|EDV83121.1| chromosomal replication initiator protein DnaA [Escherichia coli E22] gi|192957474|gb|EDV87920.1| chromosomal replication initiator protein DnaA [Escherichia coli E110019] gi|194413812|gb|EDX30090.1| chromosomal replication initiator protein DnaA [Escherichia coli B171] gi|194420758|gb|EDX36834.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1012] gi|194425233|gb|EDX41217.1| chromosomal replication initiator protein DnaA [Escherichia coli 101-1] gi|209914438|dbj|BAG79512.1| DNA replication initiator protein DnaA [Escherichia coli SE11] gi|215267114|emb|CAS11561.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O127:H6 str. E2348/69] gi|218354156|emb|CAV00757.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli 55989] gi|218363036|emb|CAR00675.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli IAI1] gi|218367546|emb|CAR05331.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli S88] gi|218372537|emb|CAR20412.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli IAI39] gi|218429554|emb|CAR10518.2| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli ED1a] gi|218434445|emb|CAR15373.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli UMN026] gi|222035416|emb|CAP78161.1| chromosomal replication initiator protein dnaA [Escherichia coli LF82] gi|226838884|gb|EEH70911.1| chromosomal replication initiation protein [Escherichia sp. 1_1_43] gi|226902766|gb|EEH89025.1| chromosomal replication initiation protein [Escherichia sp. 3_2_53FAA] gi|238860149|gb|ACR62147.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli BW2952] gi|242379241|emb|CAQ34046.1| chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253322480|gb|ACT27082.1| chromosomal replication initiator protein DnaA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975554|gb|ACT41225.1| chromosomal replication initiation protein [Escherichia coli B str. REL606] gi|253979710|gb|ACT45380.1| chromosomal replication initiation protein [Escherichia coli BL21(DE3)] gi|257761660|dbj|BAI33157.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O103:H2 str. 12009] gi|260447280|gb|ACX37702.1| chromosomal replication initiator protein DnaA [Escherichia coli DH1] gi|281180756|dbj|BAI57086.1| DNA replication initiator protein DnaA [Escherichia coli SE15] gi|284923785|emb|CBG36883.1| chromosomal replication initiator protein [Escherichia coli 042] gi|291321658|gb|EFE61094.1| chromosomal replication initiator protein DnaA [Escherichia coli B088] gi|291425633|gb|EFE98669.1| dnaA [Escherichia coli FVEC1412] gi|291431206|gb|EFF04199.1| chromosomal replication initiator protein DnaA [Escherichia coli B185] gi|294493541|gb|ADE92297.1| chromosomal replication initiator protein DnaA [Escherichia coli IHE3034] gi|298276919|gb|EFI18437.1| chromosomal replication initiator protein dnaA [Escherichia coli FVEC1302] gi|299878457|gb|EFI86668.1| replication initiator protein DnaA [Escherichia coli MS 196-1] gi|305850341|gb|EFM50798.1| chromosomal replication initiation protein [Escherichia coli NC101] gi|306906912|gb|EFN37421.1| chromosomal replication initiator protein DnaA [Escherichia coli W] gi|307555842|gb|ADN48617.1| chromosomal replication initiator protein DnaA [Escherichia coli ABU 83972] gi|307628778|gb|ADN73082.1| chromosomal replication initiation protein [Escherichia coli UM146] gi|309704149|emb|CBJ03496.1| chromosomal replication initiator protein [Escherichia coli ETEC H10407] gi|312287449|gb|EFR15357.1| chromosomal replication initiator protein DnaA [Escherichia coli 2362-75] gi|312948269|gb|ADR29096.1| chromosomal replication initiation protein [Escherichia coli O83:H1 str. NRG 857C] gi|315063008|gb|ADT77335.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli W] gi|320174824|gb|EFW49947.1| Chromosomal replication initiator protein DnaA [Shigella dysenteriae CDC 74-1112] gi|320193752|gb|EFW68385.1| Chromosomal replication initiator protein DnaA [Escherichia coli WV_060327] gi|323164686|gb|EFZ50481.1| chromosomal replication initiator protein DnaA [Shigella sonnei 53G] gi|323376398|gb|ADX48666.1| chromosomal replication initiator protein DnaA [Escherichia coli KO11] gi|323934947|gb|EGB31325.1| chromosomal replication initiator protein DnaA [Escherichia coli E1520] gi|323939235|gb|EGB35448.1| chromosomal replication initiator protein DnaA [Escherichia coli E482] gi|323944174|gb|EGB40254.1| chromosomal replication initiator protein DnaA [Escherichia coli H120] gi|323949945|gb|EGB45829.1| chromosomal replication initiator protein DnaA [Escherichia coli H252] gi|323955004|gb|EGB50782.1| chromosomal replication initiator protein DnaA [Escherichia coli H263] gi|323959767|gb|EGB55417.1| chromosomal replication initiator protein DnaA [Escherichia coli H489] gi|323971179|gb|EGB66425.1| chromosomal replication initiator protein DnaA [Escherichia coli TA007] gi|324115946|gb|EGC09872.1| chromosomal replication initiator protein DnaA [Escherichia coli E1167] gi|330908019|gb|EGH36538.1| chromosomal replication initiator protein DnaA [Escherichia coli AA86] gi|331053259|gb|EGI25292.1| replication initiation protein DnaA [Escherichia coli TA206] gi|331057862|gb|EGI29848.1| replication initiation protein DnaA [Escherichia coli TA143] gi|331062608|gb|EGI34528.1| replication initiation protein DnaA [Escherichia coli TA271] gi|331077797|gb|EGI49009.1| replication initiation protein DnaA [Escherichia coli H299] gi|332084015|gb|EGI89222.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 155-74] gi|332084892|gb|EGI90075.1| chromosomal replication initiator protein DnaA [Shigella boydii 5216-82] gi|332089364|gb|EGI94468.1| chromosomal replication initiator protein DnaA [Shigella boydii 3594-74] gi|332104863|gb|EGJ08209.1| chromosomal replication initiation protein [Shigella sp. D9] gi|332345693|gb|AEE59027.1| chromosomal replication initiator protein DnaA [Escherichia coli UMNK88] gi|332997868|gb|EGK17476.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-272] gi|333013663|gb|EGK33028.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-227] Length = 467 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 257/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNIS-KSPIILGKQ 148 R + G + + ++ A+ + + P S +S Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|170764020|ref|ZP_02637629.2| chromosomal replication initiator protein DnaA [Clostridium perfringens B str. ATCC 3626] gi|170710061|gb|EDT22243.1| chromosomal replication initiator protein DnaA [Clostridium perfringens B str. ATCC 3626] Length = 342 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 129/345 (37%), Positives = 213/345 (61%), Gaps = 13/345 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI Sbjct: 5 LNPKYTFQSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIG 59 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++ P +VVY+++E F +AI+D+ ++ R +D+LLIDD+QF+ GK Sbjct: 60 HYILQENPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGKERT 119 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +IL Sbjct: 120 QEEFFHTFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFECGLIADIQPPDFETRMAIL 179 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADE 395 K + + LN+ EV++++A + ++ REL+GA +++ S ++ ++A E Sbjct: 180 KKKADVE-----GLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDLASE 234 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L +++ E+ + ++ IQ VA +YN+ DL S RR R + PRQ+AMYLS+ +T Sbjct: 235 ALKDIISNKESAPVTVKTIQESVANYYNLRIEDLKSQRRTRNIAYPRQIAMYLSRKLTDM 294 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 S P+IG FG RDHTTV+HA K+ + L+TD L+ + ++ K+L Sbjct: 295 SLPKIGEEFGGRDHTTVIHAYEKISENLKTDEGLQSMINDITKKL 339 >gi|117625978|ref|YP_859301.1| chromosomal replication initiation protein [Escherichia coli APEC O1] gi|227883923|ref|ZP_04001728.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli 83972] gi|293413156|ref|ZP_06655822.1| chromosomal replication initiator protein DnaA [Escherichia coli B354] gi|300815051|ref|ZP_07095276.1| replication initiator protein DnaA [Escherichia coli MS 107-1] gi|300824313|ref|ZP_07104429.1| replication initiator protein DnaA [Escherichia coli MS 119-7] gi|300896031|ref|ZP_07114592.1| replication initiator protein DnaA [Escherichia coli MS 198-1] gi|300903023|ref|ZP_07120965.1| replication initiator protein DnaA [Escherichia coli MS 84-1] gi|300917468|ref|ZP_07134128.1| replication initiator protein DnaA [Escherichia coli MS 115-1] gi|300925526|ref|ZP_07141401.1| replication initiator protein DnaA [Escherichia coli MS 182-1] gi|300932333|ref|ZP_07147601.1| replication initiator protein DnaA [Escherichia coli MS 187-1] gi|300947537|ref|ZP_07161714.1| replication initiator protein DnaA [Escherichia coli MS 116-1] gi|300956292|ref|ZP_07168594.1| replication initiator protein DnaA [Escherichia coli MS 175-1] gi|300983653|ref|ZP_07176694.1| replication initiator protein DnaA [Escherichia coli MS 200-1] gi|300984540|ref|ZP_07177030.1| replication initiator protein DnaA [Escherichia coli MS 45-1] gi|301020909|ref|ZP_07184964.1| replication initiator protein DnaA [Escherichia coli MS 69-1] gi|301047520|ref|ZP_07194596.1| replication initiator protein DnaA [Escherichia coli MS 185-1] gi|301305952|ref|ZP_07212034.1| replication initiator protein DnaA [Escherichia coli MS 124-1] gi|301325006|ref|ZP_07218556.1| replication initiator protein DnaA [Escherichia coli MS 78-1] gi|301644374|ref|ZP_07244375.1| replication initiator protein DnaA [Escherichia coli MS 146-1] gi|309795749|ref|ZP_07690164.1| replication initiator protein DnaA [Escherichia coli MS 145-7] gi|331644426|ref|ZP_08345555.1| replication initiation protein DnaA [Escherichia coli H736] gi|331649528|ref|ZP_08350614.1| replication initiation protein DnaA [Escherichia coli M605] gi|331655362|ref|ZP_08356361.1| replication initiation protein DnaA [Escherichia coli M718] gi|331675192|ref|ZP_08375945.1| replication initiation protein DnaA [Escherichia coli TA280] gi|331679800|ref|ZP_08380470.1| replication initiation protein DnaA [Escherichia coli H591] gi|115515102|gb|ABJ03177.1| chromosomal replication initiation protein [Escherichia coli APEC O1] gi|227839201|gb|EEJ49667.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli 83972] gi|291468289|gb|EFF10784.1| chromosomal replication initiator protein DnaA [Escherichia coli B354] gi|300300580|gb|EFJ56965.1| replication initiator protein DnaA [Escherichia coli MS 185-1] gi|300306876|gb|EFJ61396.1| replication initiator protein DnaA [Escherichia coli MS 200-1] gi|300316879|gb|EFJ66663.1| replication initiator protein DnaA [Escherichia coli MS 175-1] gi|300360091|gb|EFJ75961.1| replication initiator protein DnaA [Escherichia coli MS 198-1] gi|300398376|gb|EFJ81914.1| replication initiator protein DnaA [Escherichia coli MS 69-1] gi|300404929|gb|EFJ88467.1| replication initiator protein DnaA [Escherichia coli MS 84-1] gi|300408373|gb|EFJ91911.1| replication initiator protein DnaA [Escherichia coli MS 45-1] gi|300415272|gb|EFJ98582.1| replication initiator protein DnaA [Escherichia coli MS 115-1] gi|300418366|gb|EFK01677.1| replication initiator protein DnaA [Escherichia coli MS 182-1] gi|300452874|gb|EFK16494.1| replication initiator protein DnaA [Escherichia coli MS 116-1] gi|300459919|gb|EFK23412.1| replication initiator protein DnaA [Escherichia coli MS 187-1] gi|300523200|gb|EFK44269.1| replication initiator protein DnaA [Escherichia coli MS 119-7] gi|300531943|gb|EFK53005.1| replication initiator protein DnaA [Escherichia coli MS 107-1] gi|300838803|gb|EFK66563.1| replication initiator protein DnaA [Escherichia coli MS 124-1] gi|300848100|gb|EFK75860.1| replication initiator protein DnaA [Escherichia coli MS 78-1] gi|301077315|gb|EFK92121.1| replication initiator protein DnaA [Escherichia coli MS 146-1] gi|308120628|gb|EFO57890.1| replication initiator protein DnaA [Escherichia coli MS 145-7] gi|315254611|gb|EFU34579.1| replication initiator protein DnaA [Escherichia coli MS 85-1] gi|315285493|gb|EFU44938.1| replication initiator protein DnaA [Escherichia coli MS 110-3] gi|315292860|gb|EFU52212.1| replication initiator protein DnaA [Escherichia coli MS 153-1] gi|315296900|gb|EFU56188.1| replication initiator protein DnaA [Escherichia coli MS 16-3] gi|324008038|gb|EGB77257.1| replication initiator protein DnaA [Escherichia coli MS 57-2] gi|324012737|gb|EGB81956.1| replication initiator protein DnaA [Escherichia coli MS 60-1] gi|324018430|gb|EGB87649.1| replication initiator protein DnaA [Escherichia coli MS 117-3] gi|331036720|gb|EGI08946.1| replication initiation protein DnaA [Escherichia coli H736] gi|331042026|gb|EGI14170.1| replication initiation protein DnaA [Escherichia coli M605] gi|331047377|gb|EGI19455.1| replication initiation protein DnaA [Escherichia coli M718] gi|331067637|gb|EGI39039.1| replication initiation protein DnaA [Escherichia coli TA280] gi|331072972|gb|EGI44297.1| replication initiation protein DnaA [Escherichia coli H591] Length = 471 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 257/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNIS-KSPIILGKQ 148 R + G + + ++ A+ + + P S +S Sbjct: 67 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 126 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|330961505|gb|EGH61765.1| chromosomal replication initiation protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 512 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 224/387 (57%), Gaps = 18/387 (4%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVA 176 T + PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 136 THNEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLA 195 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 196 RAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSER 250 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 251 FVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVI 310 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 311 LTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHD 365 Query: 356 VLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++I Sbjct: 366 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNI 424 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 425 QRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLH 484 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ E+D ++++ + L R ++ Sbjct: 485 ACRKINELKESDADIREDYKNLLRTLT 511 >gi|218291094|ref|ZP_03495117.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius LAA1] gi|218238979|gb|EED06186.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius LAA1] Length = 454 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 151/476 (31%), Positives = 253/476 (53%), Gaps = 47/476 (9%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETI 93 +S++ V ++++V Y++WF+ + + V++S P+ F++ W+ Y + Sbjct: 11 DSLWNQVLKMVQDKVSGPTYSTWFEDTHIVQIDESDQTVYISAPSAFVRNWLSEHYTSLV 70 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L I E VR + V+ +P ++ ++T PV Sbjct: 71 ETLMMT----IMDREYRVRFITEDDVQ--------------------APAVIVRRTPEPV 106 Query: 154 FGSP-------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 SP L+ R+ F +F+ G+ NR A A ++AE ++ Y NPLFI+ VG Sbjct: 107 --SPEDDTETNLNPRYTFDSFVIGAGNRFAHAACLAVAERPANAY-----NPLFIYGGVG 159 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI + + PN +V Y+++E F F +AIRD + + R +D+LLID Sbjct: 160 LGKTHLMHAIGHYVRQHYPNFKVSYISSERFTNEFIAAIRDKNPDSFRARYRTVDVLLID 219 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ K Q EF H NSL + KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 220 DIQFIANKEQTQEEFFHTFNSLHEVGKQIVISSDRPPREIPTLEDRLRSRFEWGLITDIQ 279 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E R +IL+ + K D L++ +VL +A + ++ REL+GA +++ S Sbjct: 280 PPDLETRIAILQRK----AKAD-GLDVPVDVLAFIANQIDSNIRELEGALTRVIAYSSLV 334 Query: 386 P-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 L+ +A+E L L++ + + + +Q++VA HY + +DL +R R + PRQ+ Sbjct: 335 KEDLSVALAEEALKDLIHPNRPRAVTVSHVQKVVADHYGLKVDDLKGKKRTRNIAFPRQI 394 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYL++ +T S P IG FG RDHTTV+HA +V + + D L+ ++ L + I Sbjct: 395 AMYLTRELTDLSLPRIGEAFGGRDHTTVMHACERVHEEMMRDDELRATIDRLSQAI 450 >gi|297518857|ref|ZP_06937243.1| chromosomal replication initiation protein [Escherichia coli OP50] Length = 457 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 254/468 (54%), Gaps = 22/468 (4%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF------ 97 +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 1 ARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGA 59 Query: 98 QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNIS-KSPIILGKQTISPVFG 155 R + G + + ++ A+ + + P S +S P + Sbjct: 60 DAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYR 119 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A Sbjct: 120 SNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHA 174 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 VGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 234 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R + Sbjct: 235 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 294 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 IL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFV 349 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 350 REALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELT 408 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 NHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 456 >gi|304309653|ref|YP_003809251.1| Chromosomal replication initiator protein [gamma proteobacterium HdN1] gi|301795386|emb|CBL43584.1| Chromosomal replication initiator protein [gamma proteobacterium HdN1] Length = 477 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 158/482 (32%), Positives = 257/482 (53%), Gaps = 40/482 (8%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +++++++ + W + L+ + + L P F+ W+ ++L I +L E Sbjct: 11 AKMQSELPAQQFNMWIRPLQ-AELDQGTLKLLAPNRFVLDWVNEKFLSRIGELVAEAS-- 67 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPI---------------NTNISKSPIILGKQ 148 QG + VA+ S + A S S T + + + IS +P + Sbjct: 68 -QGEQCPAVVVAIGSRQTGAVSRSTTISARVEAPKPAAAAPGNDWAGSQISSAPQVAANV 126 Query: 149 TISPVFGSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 P G L+ F+ F+EG SN++A AA +AE Y NPLF++ Sbjct: 127 HREPDLGGTVKHRTNLNGASTFNNFVEGKSNQLARAAAIQVAENPGQAY-----NPLFLY 181 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+ A+ N ++++PN +VV+LT+E F+ A++ N K R++D Sbjct: 182 GGVGLGKTHLMHAVGNFMVEKKPNAKVVFLTSEQFVADMVKALQLNAINEFKRFYRSVDA 241 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+LL+ +Q++ DR P E+ ++ R++SR G++ Sbjct: 242 LLIDDIQFFAGKERSQEEFFHTFNALLEGGRQMIFTCDRFPKEINGVEERLKSRFGWGLT 301 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + E R +ILK + E + + ++ VA+ V ++ R+L+GA ++ Sbjct: 302 VAVEPPELETRVAILKKK-----AEQASIELPDDAAFFVAQRVRSNVRDLEGALKRITAN 356 Query: 382 HSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F PI T E A E L L+ E K++ I++IQ++VA+++ I +DL S RR R+V Sbjct: 357 QQFTGKPI-TVEFAKESLKDLLALQE-KQISIDNIQKVVAEYFKIKMSDLNSKRRSRSVA 414 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RKV+++ T ++++ L R Sbjct: 415 RPRQIAMALAKELTQHSLPEIGEAFGGRDHTTVLHACRKVKELAATAPDIREDFSNLLRS 474 Query: 500 IS 501 ++ Sbjct: 475 LT 476 >gi|149186374|ref|ZP_01864687.1| chromosomal replication initiator protein [Erythrobacter sp. SD-21] gi|148829963|gb|EDL48401.1| chromosomal replication initiator protein [Erythrobacter sp. SD-21] Length = 489 Score = 249 bits (637), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 167/480 (34%), Positives = 273/480 (56%), Gaps = 35/480 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYL 90 VN + + +S L+ +G +++ W + ++ + + L +PT F W+K+R+ Sbjct: 27 VNLAADWADISQGLRKDLGHQLHSQWIKPIQLGKIDAETGTLDLFLPTEFSANWVKDRFA 86 Query: 91 ETITKLFQEEHSRIQGVEILV----RSVA---LPSVEKTASSPSITKLSPINTNISKSPI 143 + ++ ++ S ++ V I V R VA L S + ++ + T + I + Sbjct: 87 DRLSLAWKIARSEVRKVAISVHPGRRQVADLRLHSDGRRPANDADTSMMAIGADT----- 141 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 LG + G LD+ F+ F+ G +N +A AAQ +A + ++ PL++ A Sbjct: 142 -LGDTGFTSSVG--LDASLTFAAFVTGEANILAFNAAQRMAATEKPQFS-----PLYLKA 193 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + G GKTHLL AI + ++ R+ Y +AE FM F A++ N + K LR+ DLL Sbjct: 194 ATGQGKTHLLHAIGHTFLQTHNRSRIFYCSAERFMVEFVQALKANRMIEFKARLRSFDLL 253 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+QF+ GK Q E + +++LL K++V AADR P L+ ++PR+ SRL G+ Sbjct: 254 LVDDIQFIIGKASAQEELLYTIDALLAEGKRLVFAADRAPQALDGVEPRLLSRLSMGLVA 313 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D E+R IL ++L K P L + E+VL +ART+T + REL G N+L+ Sbjct: 314 DIQPADIELRKKILHSKLT---KFAP-LAVPEDVLDFLARTITRNVRELVGGLNKLI--- 366 Query: 383 SFAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 ++A + E+ A+E L+ +++ +++ I++IQR V + Y I R+++ S RR R V Sbjct: 367 AYAQLTGQEVSLQLAEEQLTDILSANR-RRITIDEIQRTVCQFYRIDRSEMSSKRRARAV 425 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 VRPRQVAMYLSK++TPRS+PEIGR+FG RDH+TV+HAVR +E + + D + +V L R Sbjct: 426 VRPRQVAMYLSKVLTPRSYPEIGRKFGGRDHSTVIHAVRLIEDLRQRDADMDGDVRSLLR 485 >gi|326625574|gb|EGE31919.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 443 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 151/445 (33%), Positives = 244/445 (54%), Gaps = 28/445 (6%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI--LVRSVALPSVEKTASSPS 127 N + L P F+ W++++YL I L + G + L V V +T +P Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLL----NAFCGADAPQLRFEVGTKPVTQTLKTPV 68 Query: 128 ITKLSPINTNISKSPIIL-----GKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALT 178 ++P T ++ + G + P + S ++ + F F+EG SN++A Sbjct: 69 HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 128 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 129 AARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFV 183 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ Sbjct: 184 QDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILT 243 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV Sbjct: 244 SDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVA 298 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ Sbjct: 299 FFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQK 357 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA Sbjct: 358 TVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHAC 417 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+E++ E +K++ L R +S Sbjct: 418 RKIEQLREESHDIKEDFSNLIRTLS 442 >gi|70733514|ref|YP_257153.1| chromosomal replication initiation protein [Pseudomonas fluorescens Pf-5] gi|123776101|sp|Q4KKT0|DNAA_PSEF5 RecName: Full=Chromosomal replication initiator protein DnaA gi|68347813|gb|AAY95419.1| chromosomal replication initiator protein DnaA [Pseudomonas fluorescens Pf-5] Length = 513 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 145/388 (37%), Positives = 224/388 (57%), Gaps = 18/388 (4%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRV 175 + + PS P+ S+ + +Q V G S L+ F F F+EG SN++ Sbjct: 136 EVSEEPSRDSFDPMAGASSQQAPVRAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQL 195 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 196 ARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSE 250 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV Sbjct: 251 RFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQV 310 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+E L+ R++SR G++V + + E R +IL + + + K+ + Sbjct: 311 ILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVELPH 365 Query: 355 EVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIED 413 + +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++ Sbjct: 366 DAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDN 424 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVL Sbjct: 425 IQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVL 484 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ E+D ++++ + L R ++ Sbjct: 485 HACRKINELKESDADIREDYKNLLRTLT 512 >gi|82546034|ref|YP_409981.1| chromosomal replication initiation protein [Shigella boydii Sb227] gi|123769372|sp|Q31UV5|DNAA_SHIBS RecName: Full=Chromosomal replication initiator protein DnaA gi|81247445|gb|ABB68153.1| DnaA [Shigella boydii Sb227] Length = 467 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 257/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNIS-KSPIILGKQ 148 R + G + + ++ A+ + + P S +S Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTIHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|323965763|gb|EGB61214.1| chromosomal replication initiator protein DnaA [Escherichia coli M863] gi|323975231|gb|EGB70335.1| chromosomal replication initiator protein DnaA [Escherichia coli TW10509] gi|327250845|gb|EGE62547.1| chromosomal replication initiator protein DnaA [Escherichia coli STEC_7v] Length = 467 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 155/479 (32%), Positives = 258/479 (53%), Gaps = 30/479 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS--- 151 + G + L V V +T + + ++ P + T S Sbjct: 63 L----TSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAHAQPQRVAPSTRSGWD 118 Query: 152 -------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 119 NVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 173 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 174 TGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 233 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 234 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 293 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 294 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 348 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 349 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 407 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|237806777|ref|YP_002891217.1| chromosomal replication initiator protein DnaA [Tolumonas auensis DSM 9187] gi|259645264|sp|C4L755|DNAA_TOLAT RecName: Full=Chromosomal replication initiator protein DnaA gi|237499038|gb|ACQ91631.1| chromosomal replication initiator protein DnaA [Tolumonas auensis DSM 9187] Length = 461 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 158/475 (33%), Positives = 256/475 (53%), Gaps = 28/475 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL+ ++ + W + L+ ++ L F+ W++++YL I L Sbjct: 4 SLWQQCLTRLQEELPSGEFGLWIRPLQAEFGDRSLT-LYAANRFILDWVRDKYLLRINSL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQTIS 151 F E I G + A+ A+ T +P+ ++ P I KQ Sbjct: 63 FTE----ICGADAPTLHFAVGRRPTAATVQMNTAAAPV-ADVRIGPAITVPSWTSKQDAM 117 Query: 152 PVFG--SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P S ++ + F F+EG SN++AL AA +AE Y NPLF++ GLGK Sbjct: 118 PEINHKSNINETYTFENFVEGKSNQLALAAAHQVAENPGGAY-----NPLFLYGGTGLGK 172 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N R+PN +V+Y+ +E F+ A+++N + R++D LLIDD+Q Sbjct: 173 THLLHAVGNGIRARKPNAKVIYMQSERFVQDMVKALQNNAIQEFQRYYRSVDALLIDDIQ 232 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E++ ++ R++SR G+++ + + Sbjct: 233 FFAKKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPE 292 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--P 386 E R +IL + + E+ K+++ EV +A+ + ++ REL+GA N+++ F P Sbjct: 293 LETRVAIL-----MRKAEENKIHLPHEVAFFIAKRLRSNVRELEGALNRVIANARFTGKP 347 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 I + E L ++ E K + IE+IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 348 I-NIDFVREALRDMLALQE-KLVTIENIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAM 405 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 406 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIAELREESNDIKEDYSNLIRTLS 460 >gi|66043272|ref|YP_233113.1| chromosomal replication initiation protein [Pseudomonas syringae pv. syringae B728a] gi|81308685|sp|Q500U7|DNAA_PSEU2 RecName: Full=Chromosomal replication initiator protein DnaA gi|63253979|gb|AAY35075.1| chromosomal replication initiator protein, DnaA [Pseudomonas syringae pv. syringae B728a] gi|330970325|gb|EGH70391.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 511 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 223/387 (57%), Gaps = 18/387 (4%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVA 176 T PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 135 THDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLA 194 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 195 RAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSER 249 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 250 FVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVI 309 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 310 LTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHD 364 Query: 356 VLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++I Sbjct: 365 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNI 423 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 424 QRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLH 483 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ E+D ++++ + L R ++ Sbjct: 484 ACRKINELKESDADIREDYKNLLRTLT 510 >gi|104779317|ref|YP_605815.1| chromosomal replication initiation protein [Pseudomonas entomophila L48] gi|123255134|sp|Q1I2G4|DNAA_PSEE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|95108304|emb|CAK12998.1| Chromosomal replication initiator protein DnaA [Pseudomonas entomophila L48] Length = 508 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 139/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 171 SYLNRTFTFETFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 225 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 226 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 285 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 286 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 345 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 346 IL-----MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 400 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 401 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 459 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 460 NHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 507 >gi|220933194|ref|YP_002512093.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. HL-EbGR7] gi|219994504|gb|ACL71106.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. HL-EbGR7] Length = 455 Score = 249 bits (636), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 162/463 (34%), Positives = 254/463 (54%), Gaps = 24/463 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS- 102 +RL++++ +W + L+ H + L P F+ W+++ + + I + + + Sbjct: 12 ARLESELSEQQLNTWIRPLQAVEDDHAL-RLLAPNRFVMDWVRDHFFQRIDAMVTDLGTQ 70 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 R +E+ P+VE S +P+ ++ P+ S F + L+ F Sbjct: 71 RRVMLEVGSGRPPAPTVEPRPSP------APVTAAVNVQPVSHRPAASSAQFTNNLNPNF 124 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+EG SN++A A+ +A Y NPLF++ VGLGKTHL+ AI NA + Sbjct: 125 TFDNFVEGKSNQLARAASLQVAANVGLAY-----NPLFLYGGVGLGKTHLMHAIGNAILA 179 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 +P +VVYL +E F+ A++ N K R++D LLIDD+QF GK Q EF Sbjct: 180 HRPGAKVVYLHSERFVADMIKALQHNAIDEFKGYYRSVDALLIDDIQFFAGKERSQEEFF 239 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+LL+S +QV+ DR P E++ L+ R++SR G++V + + E R +IL+ + Sbjct: 240 HTFNALLESQQQVILTCDRYPKEVDGLEERLKSRFGWGLTVAIEPPELETRVAILQRKAE 299 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSH 399 + E P EV +A+ + ++ REL+GA ++V F PI T + A E L Sbjct: 300 QANTELPS-----EVAFFMAKRIRSNIRELEGALRRVVANAHFTGRPI-TLDFAKEALRD 353 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L+ + K + I++IQ+ VA++Y I +DL S RR R++ RPRQ+AM L+K +T S PE Sbjct: 354 LLAL-QDKLITIDNIQKTVAEYYKIRVSDLHSTRRSRSITRPRQLAMALAKELTNHSLPE 412 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE-VELLKRLIS 501 IG FG RDHTTVLHA RKV ++ ETD + ++ V LL+ L S Sbjct: 413 IGDAFGGRDHTTVLHACRKVVELRETDPRINEDYVNLLRTLSS 455 >gi|26986755|ref|NP_742180.1| chromosomal replication initiation protein [Pseudomonas putida KT2440] gi|60392185|sp|P0A116|DNAA_PSEPK RecName: Full=Chromosomal replication initiator protein DnaA gi|60392186|sp|P0A117|DNAA_PSEPU RecName: Full=Chromosomal replication initiator protein DnaA gi|24981346|gb|AAN65644.1|AE016191_1 chromosomal replication initiator protein DnaA [Pseudomonas putida KT2440] gi|581460|emb|CAA32893.1| unnamed protein product [Pseudomonas putida] Length = 506 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 139/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 169 SYLNRTFTFDTFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 223 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 224 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 283 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 284 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 343 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 344 IL-----MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 398 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 399 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 457 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 458 NHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 505 >gi|330876355|gb|EGH10504.1| chromosomal replication initiation protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 395 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 223/387 (57%), Gaps = 18/387 (4%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVA 176 T PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 19 THDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLA 78 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 79 RAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSER 133 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 134 FVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVI 193 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 194 LTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHD 248 Query: 356 VLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++I Sbjct: 249 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNI 307 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 308 QRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLH 367 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ E+D ++++ + L R ++ Sbjct: 368 ACRKINELKESDADIREDYKNLLRTLT 394 >gi|301384271|ref|ZP_07232689.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tomato Max13] gi|302063879|ref|ZP_07255420.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tomato K40] gi|302131962|ref|ZP_07257952.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 511 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 223/387 (57%), Gaps = 18/387 (4%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVA 176 T PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 135 THDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLA 194 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 195 RAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSER 249 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 250 FVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVI 309 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 310 LTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHD 364 Query: 356 VLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++I Sbjct: 365 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNI 423 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 424 QRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLH 483 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ E+D ++++ + L R ++ Sbjct: 484 ACRKINELKESDADIREDYKNLLRTLT 510 >gi|325275332|ref|ZP_08141283.1| chromosomal replication initiation protein [Pseudomonas sp. TJI-51] gi|324099523|gb|EGB97418.1| chromosomal replication initiation protein [Pseudomonas sp. TJI-51] Length = 340 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 139/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 3 SYLNRTFTFDTFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 57 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 58 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 117 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 118 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 177 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 178 IL-----MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 232 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 233 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 291 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 292 NHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 339 >gi|312126263|ref|YP_003991137.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor hydrothermalis 108] gi|311776282|gb|ADQ05768.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor hydrothermalis 108] Length = 454 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 139/356 (39%), Positives = 214/356 (60%), Gaps = 12/356 (3%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 KQ P + L+ ++ F TF+ G++NR+A AA ++AE T NPLFI+ VG Sbjct: 101 KQDEKPEIVTQLNPKYTFETFVVGNNNRLAHAAALAVAETPPGERT---YNPLFIYGGVG 157 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LLID Sbjct: 158 LGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLLID 217 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 218 DIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQ 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSF 384 D+E R +IL + + P + +L +A + T+ REL+GA N+ L + Sbjct: 278 PPDFETRIAILSKKCQLEGTPVP-----QHILEFIASKIETNIRELEGALNKILAYSKLM 332 Query: 385 API--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 AP +T E+A++ L ++T K++ IEDIQ VA ++ I D S+RR R V PR Sbjct: 333 APDKEITLELAEKALKEFIDTNTKKELTIEDIQAEVASYFGIRLEDFKSSRRSRNVAYPR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Q+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ TD + VE +K+ Sbjct: 393 QIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINTDSNTRNAVETIKK 448 >gi|213968441|ref|ZP_03396584.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato T1] gi|213926729|gb|EEB60281.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato T1] Length = 509 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 223/387 (57%), Gaps = 18/387 (4%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVA 176 T PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 133 THDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLA 192 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 193 RAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSER 247 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 248 FVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVI 307 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 308 LTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHD 362 Query: 356 VLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++I Sbjct: 363 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNI 421 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 422 QRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLH 481 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ E+D ++++ + L R ++ Sbjct: 482 ACRKINELKESDADIREDYKNLLRTLT 508 >gi|82779231|ref|YP_405580.1| chromosomal replication initiation protein [Shigella dysenteriae Sd197] gi|309784248|ref|ZP_07678887.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1617] gi|123769515|sp|Q329B6|DNAA_SHIDS RecName: Full=Chromosomal replication initiator protein DnaA gi|81243379|gb|ABB64089.1| DnaA [Shigella dysenteriae Sd197] gi|308927755|gb|EFP73223.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1617] Length = 467 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 152/486 (31%), Positives = 260/486 (53%), Gaps = 44/486 (9%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL--SPINTNISKSPIILGKQT----- 149 + G + P + + +T+ + + +N++ ++ Q Sbjct: 63 L----TSFCGADA-------PQLRFEVGTKPVTQTPQAAVTSNVAAPALVAQTQPQRAAP 111 Query: 150 ------------ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 P + S ++ + F F+EG SN++A AA+ +A+ Y N Sbjct: 112 STRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----N 166 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K Sbjct: 167 PLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYY 226 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR Sbjct: 227 RSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRF 286 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G++V + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N Sbjct: 287 GWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALN 341 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 +++ +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR Sbjct: 342 RVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRS 400 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ Sbjct: 401 RSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSN 460 Query: 496 LKRLIS 501 L R +S Sbjct: 461 LIRTLS 466 >gi|330964181|gb|EGH64441.1| chromosomal replication initiation protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 511 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 223/387 (57%), Gaps = 18/387 (4%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVA 176 T PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 135 THDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLA 194 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 195 RAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSER 249 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 250 FVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVI 309 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 310 LTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHD 364 Query: 356 VLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++I Sbjct: 365 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNI 423 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 424 QRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLH 483 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ E+D ++++ + L R ++ Sbjct: 484 ACRKINELKESDADIREDYKNLLRTLT 510 >gi|313496418|gb|ADR57784.1| DnaA [Pseudomonas putida BIRD-1] Length = 504 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 139/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 167 SYLNRTFTFDTFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 221 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 222 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 281 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 282 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 341 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 342 IL-----MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 396 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 397 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 455 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 456 NHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 503 >gi|183597172|ref|ZP_02958665.1| hypothetical protein PROSTU_00415 [Providencia stuartii ATCC 25827] gi|188023486|gb|EDU61526.1| hypothetical protein PROSTU_00415 [Providencia stuartii ATCC 25827] Length = 463 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 157/483 (32%), Positives = 265/483 (54%), Gaps = 42/483 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYINNINEL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT---NISKSPII-LGKQTISP 152 + G + P++ S IT +SP NT + ++P I + + P Sbjct: 63 LND----FCGTDA-------PALRFEVGSKPIT-VSPTNTQARHTHEAPAIAVPSAPVKP 110 Query: 153 ------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + S ++ + F F+EG SN++A AA+ +AE Y NPLF Sbjct: 111 SWDNSTKAQPDVAYRSNVNPKHTFDNFVEGKSNQLARAAARQVAENPGGAY-----NPLF 165 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ GLGKTHLL A+ N+ ++ + N RVVY+ +E F+ A+++N K R++ Sbjct: 166 LYGGTGLGKTHLLHAVGNSIMQHKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV 225 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G Sbjct: 226 DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWG 285 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + E R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ Sbjct: 286 LTVAIEPPELETRVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVI 340 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V Sbjct: 341 ANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSV 399 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R Sbjct: 400 ARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIR 459 Query: 499 LIS 501 +S Sbjct: 460 TLS 462 >gi|148545260|ref|YP_001265362.1| chromosomal replication initiation protein [Pseudomonas putida F1] gi|166214693|sp|A5VWB8|DNAA_PSEP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|148509318|gb|ABQ76178.1| chromosomal replication initiator protein DnaA [Pseudomonas putida F1] Length = 505 Score = 249 bits (636), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 139/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 168 SYLNRTFTFDTFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 222 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 223 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 282 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 283 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 342 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 343 IL-----MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 397 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 398 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 456 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 457 NHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 504 >gi|326202772|ref|ZP_08192639.1| chromosomal replication initiator protein DnaA [Clostridium papyrosolvens DSM 2782] gi|325986849|gb|EGD47678.1| chromosomal replication initiator protein DnaA [Clostridium papyrosolvens DSM 2782] Length = 440 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 150/473 (31%), Positives = 261/473 (55%), Gaps = 37/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V I+ LK ++ + +W ++ S+ N V L VP +F K +++RY Sbjct: 1 MNVQLNEIWNRTLELLKGEMTEISFNTWILTIEPISIDSNTVTLGVPADFNKGILESRYS 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I F++ R + A+PS + P+I + + ++N+S Sbjct: 61 YLIKNAFRQISHREYNI-----YFAIPS--QGPIKPAIQEYNE-DSNMSF---------- 102 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ G+ NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 103 -------LNPKYTFDTFVIGNGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 150 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + + P L+V+Y+++E F +AIRD+ + RNID+LLIDD+QF Sbjct: 151 HLMHAIGHFVLGQNPALKVLYVSSEKFTNELINAIRDDKNEEFRYKYRNIDVLLIDDIQF 210 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK + EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 211 IGGKERTEEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIAPPDL 270 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL+ + + L++ ++V++ +A V ++ REL+GA N+++ + I+ Sbjct: 271 ETRIAILRKKAQLEN-----LDVPDDVMVFIADKVGSNIRELEGALNRVIAYSTLTENIM 325 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A E L ++N + + + IQ V++++++ ++L S +R R V PRQ+AM+L Sbjct: 326 NVDMAVEALKDMLNNSKAVIINSKTIQEAVSRYFHLKTDELKSKKRSRDVSFPRQIAMHL 385 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT S P+IG FG RDHTTV+HA K+ LE L++ VE +K+ I+ Sbjct: 386 CREMTDMSLPKIGDEFGGRDHTTVIHACEKINHDLENSAELRRTVEDIKKNIT 438 >gi|238897212|ref|YP_002921960.1| chromosomal replication initiation protein [Klebsiella pneumoniae NTUH-K2044] gi|238549542|dbj|BAH65893.1| chromosomal replication initiation protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 467 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 157/476 (32%), Positives = 264/476 (55%), Gaps = 24/476 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALP--SVEKTASSPSITKLSPINTNISKS-PIIL--GKQTI- 150 + ++ A P S++K A SP+ + +++ P I+ G + Sbjct: 63 LND-FCGADAPQLRFEVGAKPASSLQKGAVSPAAAAIPAAQVQTARAAPTIVRPGWDNVP 121 Query: 151 ---SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 122 APAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 176 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 177 GKTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 236 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 237 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 296 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 297 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 351 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 352 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 410 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|167031024|ref|YP_001666255.1| chromosomal replication initiation protein [Pseudomonas putida GB-1] gi|189044600|sp|B0KEU9|DNAA_PSEPG RecName: Full=Chromosomal replication initiator protein DnaA gi|166857512|gb|ABY95919.1| chromosomal replication initiator protein DnaA [Pseudomonas putida GB-1] Length = 510 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 139/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 173 SYLNRTFTFDTFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 227 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 228 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 287 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 288 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 347 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 348 IL-----MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 402 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 403 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 461 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 462 NHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 509 >gi|119471658|ref|ZP_01614043.1| DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes [Alteromonadales bacterium TW-7] gi|119445437|gb|EAW26724.1| DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes [Alteromonadales bacterium TW-7] Length = 462 Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 151/466 (32%), Positives = 261/466 (56%), Gaps = 27/466 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE----EH 101 L++++ ++ W + L+ S + + + P F+ W++ +YL I +L E E Sbjct: 13 LQDELPSQQFSMWVRPLQAEST-EDTLTIYAPNRFVLDWVREKYLNRINELLVEICGDEA 71 Query: 102 SRIQ---GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 ++ G + L+ + P+ E +PSI + S + P++ + + S + Sbjct: 72 PELRFDVGSKPLLNTQVAPATE-AQPAPSI-QASAKQQPREQKPVV--EPAPKSGYKSNI 127 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + F +F+EG SN++A AA +A+ + NP+FI+ GLGKTHLL A+ N Sbjct: 128 KENYTFDSFVEGKSNQLAKAAATQVADNPGSAF-----NPVFIYGGTGLGKTHLLHAVGN 182 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + +P+ ++VY+ +E F+ A+++N K R++D L+IDD+QF K Q Sbjct: 183 GIMANKPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKERSQ 242 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E R +IL Sbjct: 243 EEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVAIL- 301 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADE 395 + + + K+N+ EV +A+ + ++ REL+GA N+++ +F PI + + E Sbjct: 302 ----MKKAQQSKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPI-SIDFVKE 356 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + K + I++IQR VA++Y I +DLLS RR R++ RPRQVAM LSK +T Sbjct: 357 ALRDLLAL-QDKLVTIDNIQRTVAEYYRIRVSDLLSKRRSRSIARPRQVAMALSKELTNH 415 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK++ + + +K++ + L R +S Sbjct: 416 SLPEIGDAFGGRDHTTVLHACRKIKSLRDESHEIKEDYQNLIRTLS 461 >gi|206580988|ref|YP_002235886.1| chromosomal replication initiator protein DnaA [Klebsiella pneumoniae 342] gi|288932893|ref|YP_003436952.1| chromosomal replication initiator protein DnaA [Klebsiella variicola At-22] gi|226735819|sp|B5XT51|DNAA_KLEP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|206570046|gb|ACI11822.1| chromosomal replication initiator protein DnaA [Klebsiella pneumoniae 342] gi|288887622|gb|ADC55940.1| chromosomal replication initiator protein DnaA [Klebsiella variicola At-22] Length = 467 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 157/476 (32%), Positives = 264/476 (55%), Gaps = 24/476 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALP--SVEKTASSPSITKLSPINTNISK-SPIIL--GKQTI- 150 + ++ A P S++K A SP+ + ++ +P I+ G + Sbjct: 63 LND-FCGADAPQLRFEVGAKPASSLQKGAVSPAAAAIPAAQVQTARVAPTIVRPGWDNVP 121 Query: 151 ---SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 122 APAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 176 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 177 GKTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 236 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 237 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 296 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 297 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 351 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 352 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 410 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|170719188|ref|YP_001746876.1| chromosomal replication initiation protein [Pseudomonas putida W619] gi|226735835|sp|B1J3Y2|DNAA_PSEPW RecName: Full=Chromosomal replication initiator protein DnaA gi|169757191|gb|ACA70507.1| chromosomal replication initiator protein DnaA [Pseudomonas putida W619] Length = 511 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 139/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 174 SYLNRTFTFETFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 228 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 229 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 288 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 289 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 348 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 349 IL-----MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 403 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 404 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 462 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 463 NHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 510 >gi|300940887|ref|ZP_07155414.1| replication initiator protein DnaA [Escherichia coli MS 21-1] gi|300454368|gb|EFK17861.1| replication initiator protein DnaA [Escherichia coli MS 21-1] Length = 471 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 257/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNIS-KSPIILGKQ 148 R + G + + ++ A+ + + P S +S Sbjct: 67 LTSFCGADAPQLRFEVGTKPVTQTPQAVVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 126 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|152989598|ref|YP_001345397.1| chromosomal replication initiation protein [Pseudomonas aeruginosa PA7] gi|150964756|gb|ABR86781.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa PA7] Length = 512 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 156/399 (39%), Positives = 232/399 (58%), Gaps = 24/399 (6%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFS 165 V SV S E A PSI L+ + +P I ++ + V G S L+ F F Sbjct: 129 VSSVTADSYE--AEEPSIDPLA-VAMPAGAAPAIRTERNVQ-VEGALKHTSYLNRTFTFE 184 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ P Sbjct: 185 NFVEGKSNQLARAAAWQVADNLKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNP 239 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 N +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF H Sbjct: 240 NAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTF 299 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + Sbjct: 300 NALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKK 354 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVN 402 E K+ + + +A+ + ++ REL+GA +++ F PI T E+ E L L+ Sbjct: 355 AEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPI-TIELIRESLKDLLA 413 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG Sbjct: 414 L-QDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGV 472 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 473 AFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 511 >gi|28867244|ref|NP_789863.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato str. DC3000] gi|38257476|sp|Q88BK3|DNAA_PSESM RecName: Full=Chromosomal replication initiator protein DnaA gi|28850478|gb|AAO53558.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato str. DC3000] Length = 511 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 223/387 (57%), Gaps = 18/387 (4%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVA 176 T PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 135 THDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLA 194 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 195 RAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSER 249 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 250 FVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVI 309 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 310 LTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHD 364 Query: 356 VLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++I Sbjct: 365 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNI 423 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 424 QRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLH 483 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ E+D ++++ + L R ++ Sbjct: 484 ACRKINELKESDADIREDYKNLLRTLT 510 >gi|30065010|ref|NP_839181.1| chromosomal replication initiation protein [Shigella flexneri 2a str. 2457T] gi|30043271|gb|AAP18992.1| replication initiation protein DnaA [Shigella flexneri 2a str. 2457T] gi|281603071|gb|ADA76055.1| Chromosomal replication initiator protein dnaA [Shigella flexneri 2002017] gi|313647710|gb|EFS12158.1| chromosomal replication initiator protein DnaA [Shigella flexneri 2a str. 2457T] gi|332750694|gb|EGJ81102.1| chromosomal replication initiator protein DnaA [Shigella flexneri 4343-70] gi|332751785|gb|EGJ82183.1| chromosomal replication initiator protein DnaA [Shigella flexneri 2747-71] gi|332997470|gb|EGK17086.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-218] gi|333013259|gb|EGK32632.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-304] Length = 467 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 256/475 (53%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNIS-KSPIILGKQ 148 R + G + + ++ A+ + + P S +S Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAACQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|330005213|ref|ZP_08305172.1| replication initiator protein DnaA [Klebsiella sp. MS 92-3] gi|328536345|gb|EGF62707.1| replication initiator protein DnaA [Klebsiella sp. MS 92-3] Length = 471 Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 157/476 (32%), Positives = 264/476 (55%), Gaps = 24/476 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRIQGVEILVRSVALP--SVEKTASSPSITKLSPINTNISKS-PIIL--GKQTI- 150 + ++ A P S++K A SP+ + +++ P I+ G + Sbjct: 67 LND-FCGADAPQLRFEVGAKPASSLQKGAVSPAAAAIPAAQVQTARAAPTIVRPGWDNVP 125 Query: 151 ---SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 126 APAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 180 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 181 GKTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 240 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 241 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 300 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 301 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 355 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 356 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 414 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 415 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|187731749|ref|YP_001882464.1| chromosomal replication initiation protein [Shigella boydii CDC 3083-94] gi|226735848|sp|B2TUS6|DNAA_SHIB3 RecName: Full=Chromosomal replication initiator protein DnaA gi|187428741|gb|ACD08015.1| chromosomal replication initiator protein DnaA [Shigella boydii CDC 3083-94] Length = 467 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 153/475 (32%), Positives = 257/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNIS-KSPIILGKQ 148 R + G + + ++ A+ + + P S +S Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDILLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|290511689|ref|ZP_06551057.1| chromosomal replication initiator protein DnaA [Klebsiella sp. 1_1_55] gi|289775479|gb|EFD83479.1| chromosomal replication initiator protein DnaA [Klebsiella sp. 1_1_55] Length = 471 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 157/476 (32%), Positives = 264/476 (55%), Gaps = 24/476 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRIQGVEILVRSVALP--SVEKTASSPSITKLSPINTNISK-SPIIL--GKQTI- 150 + ++ A P S++K A SP+ + ++ +P I+ G + Sbjct: 67 LND-FCGADAPQLRFEVGAKPASSLQKGAVSPAAAAIPAAQVQTARVAPTIVRPGWDNVP 125 Query: 151 ---SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 126 APAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 180 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 181 GKTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 240 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 241 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 300 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 301 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 355 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 356 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 414 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 415 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|325915701|ref|ZP_08178006.1| chromosomal replication initiator protein DnaA [Xanthomonas vesicatoria ATCC 35937] gi|325538118|gb|EGD09809.1| chromosomal replication initiator protein DnaA [Xanthomonas vesicatoria ATCC 35937] Length = 442 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 164/482 (34%), Positives = 249/482 (51%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDGIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + VAL + + + +PI Sbjct: 48 QVRERYLPRIRELLAYFAGNGE--------VALAVGSRPRAPEPAPAPMAAPSAPVAAPI 99 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 + F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 100 V--------PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + +I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|331017725|gb|EGH97781.1| chromosomal replication initiation protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 395 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 223/387 (57%), Gaps = 18/387 (4%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVA 176 T PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 19 THDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLA 78 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 79 RAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSER 133 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 134 FVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVI 193 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 194 LTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHD 248 Query: 356 VLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++I Sbjct: 249 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNI 307 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 308 QRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLH 367 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ E+D ++++ + L R ++ Sbjct: 368 ACRKINELKESDADIREDYKNLLRTLT 394 >gi|251787653|ref|YP_003002374.1| chromosomal replication initiator protein DnaA [Dickeya zeae Ech1591] gi|247536274|gb|ACT04895.1| chromosomal replication initiator protein DnaA [Dickeya zeae Ech1591] Length = 464 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/481 (32%), Positives = 263/481 (54%), Gaps = 37/481 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYINNINGL 62 Query: 97 FQEEHSRIQGVEI-LVR-------------SVALPSVEKTASSPSITKLSPINTNISKSP 142 + G++ L+R S S ++P SP+ + ++P Sbjct: 63 LND----FCGMDAPLLRFEVGSKPATPAAVSAGNGSHNAAVAAPQARVASPVRPSW-ETP 117 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + + T + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 118 VAPTEHT----YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLY 168 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D Sbjct: 169 GGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDA 228 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++ Sbjct: 229 LLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLT 288 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ Sbjct: 289 VAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIAN 343 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V R Sbjct: 344 ANFTGRSITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVAR 402 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R + Sbjct: 403 PRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 462 Query: 501 S 501 S Sbjct: 463 S 463 >gi|107098995|ref|ZP_01362913.1| hypothetical protein PaerPA_01000001 [Pseudomonas aeruginosa PACS2] gi|296386473|ref|ZP_06875972.1| chromosomal replication initiation protein [Pseudomonas aeruginosa PAb1] Length = 381 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/348 (40%), Positives = 211/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 44 SYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGY-----NPLFLYGGVGLGKTHLMHA 98 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 99 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 158 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 159 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 218 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + E K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 219 IL-----MKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELI 273 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 274 RESLKDLLAL-QDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 332 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 333 NHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 380 >gi|242237461|ref|YP_002985642.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech703] gi|242129518|gb|ACS83820.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech703] Length = 462 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 154/479 (32%), Positives = 259/479 (54%), Gaps = 35/479 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-PIILGKQTISP--- 152 + G++ L E + S +S + +I+ P + + P Sbjct: 63 LND----FCGMD-----APLLRFEVGSKPVSAVPVSSVGNSIAAPVPQVRAASLMRPSWD 113 Query: 153 --------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 114 TQSAPTEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 168 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 169 TGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 228 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 229 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 288 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 289 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 343 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 344 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 402 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 403 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|257485599|ref|ZP_05639640.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 511 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 139 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 198 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 199 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 253 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 254 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 313 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 314 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 368 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 369 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 427 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 428 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 487 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 488 INELKESDADIREDYKNLLRTLT 510 >gi|212712612|ref|ZP_03320740.1| hypothetical protein PROVALCAL_03707 [Providencia alcalifaciens DSM 30120] gi|212684828|gb|EEB44356.1| hypothetical protein PROVALCAL_03707 [Providencia alcalifaciens DSM 30120] Length = 491 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 154/476 (32%), Positives = 260/476 (54%), Gaps = 28/476 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 32 SLWQQCLARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYINNINEL 90 Query: 97 FQEE--------HSRIQGVEILVRSVALPSVEKTASSPSITKLS-PINTNISKSPIILGK 147 + H + ++ V+ P V P+ S P+ + S K Sbjct: 91 LNDFCGSDAPALHFEVGNKPMMAAPVS-PQVRTHNEMPAFAAPSAPVKPSWDNS----AK 145 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + S ++ + F F+EG SN++A AA+ +AE Y NPLF++ GL Sbjct: 146 VQPDVSYRSNVNPKHTFDNFVEGKSNQLARAAARQVAENPGGAY-----NPLFLYGGTGL 200 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N+ ++ + N RVVY+ +E F+ A+++N K R++D LLIDD Sbjct: 201 GKTHLLHAVGNSIMQHKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 260 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 261 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 320 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F Sbjct: 321 PELETRVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 375 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 376 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 434 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 435 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 490 >gi|225575691|ref|ZP_03784301.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM 10507] gi|225037095|gb|EEG47341.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM 10507] Length = 449 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 156/458 (34%), Positives = 262/458 (57%), Gaps = 48/458 (10%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLK-AWIKNRYLETITKL-FQEEHSRIQGVE-ILV 111 + +W + LK +SV NIV + VP+ + +I +Y KL Q S + G++ V Sbjct: 26 FDTWLKPLKVYSVEGNIVTILVPSEQVGLNYINKKY-----KLPLQVTISELTGIDRCEV 80 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 + + V+K S I+ +T + + L+ R+ F TF+ GS Sbjct: 81 QFILSDDVKKITSKNLISN----DTRFEE---------------ANLNPRYTFGTFVVGS 121 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 +N+ A A+ ++AE Y NPLFI+ VGLGKTHL+ +IA ++ P+ +V+Y Sbjct: 122 NNKFAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSIARFILEHNPDSKVLY 176 Query: 232 LTAEYFMWRFASAIR--DNCAL-NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 +T+E F AIR +N A+ +D RNID+LL+DD+QF+ GK Q EF H NSL Sbjct: 177 VTSEEFTNELIEAIRNGNNTAMTQFRDKYRNIDVLLVDDVQFIIGKDATQEEFFHTFNSL 236 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + KQ++ ++D+PP ++E L+ RIRSR + G+ + DYE R +ILK + +E Sbjct: 237 HSAKKQIIISSDKPPKDMEILEDRIRSRFEWGLIADISSPDYETRVAILKKK-----EEM 291 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNT 403 +INE+V+ ++A + ++ REL+G+ N+++ +FA + +T E+A+++L +++ Sbjct: 292 DGYDINEDVIKYIATNIKSNIRELEGSLNKVM---AFANLEKREVTVELAEQVLKDIISP 348 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + K + E I MVA+HY+I+ +++ N+R +V PRQ+AMYL + M +G+ Sbjct: 349 DQQKIITPEYIISMVAEHYDITIDEIKGNKRNSKIVIPRQIAMYLCREMIDIPLKSVGKC 408 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G+RDHTT++H K+E L+T T+K +E+L + I+ Sbjct: 409 LGNRDHTTIMHGCEKIEHELQTSDTMKNTIEVLMKKIN 446 >gi|330976402|gb|EGH76459.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 511 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 223/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 + PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 NEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|330937300|gb|EGH41308.1| chromosomal replication initiation protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 511 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 223/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 + PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 NEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|258510021|ref|YP_003183455.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476747|gb|ACV57066.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 454 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 150/469 (31%), Positives = 251/469 (53%), Gaps = 33/469 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETI 93 ++++ V ++++V Y++WF+ + V++S P+ F++ W+ Y + Sbjct: 11 DALWNQVLQMVQDKVSGPTYSTWFEDTHIVRIDESEQTVYISAPSTFVRNWLSEHYTSLV 70 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L R E VR + V+ A I + +P P+ + T Sbjct: 71 ETLMMTLMDR----EYRVRFITEDDVQAPAV---IVRRAP-------EPVTAEEDT---- 112 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ R+ F +F+ G+ NR A A ++AE ++ Y NPLFI+ VGLGKTHL+ Sbjct: 113 -ETNLNPRYTFDSFVIGAGNRFAHAACLAVAERPANAY-----NPLFIYGGVGLGKTHLM 166 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + PN +V Y+++E F F +AIRD + + R +D+LLIDD+QF+ Sbjct: 167 HAIGHYVRQHYPNFKVSYISSERFTNEFIAAIRDKNPDSFRARYRTVDVLLIDDIQFIAN 226 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H NSL + KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 227 KEQTQEEFFHTFNSLHEVGKQIVISSDRPPREIPTLEDRLRSRFEWGLITDIQPPDLETR 286 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+ + K D L++ +VL +A + ++ REL+GA +++ S L+ Sbjct: 287 IAILQRK----AKAD-GLDVPVDVLAFIANQIDSNIRELEGALTRVIAYSSLVKEDLSVA 341 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+E L L++ + + + +Q++VA HY + +DL +R R + PRQ+AMYL++ Sbjct: 342 LAEEALKDLIHPNRPRAVTVNHVQKVVADHYGLKVDDLKGKKRTRNIAFPRQIAMYLTRE 401 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P IG FG RDHTTV+HA +V + + D L+ +E L + I Sbjct: 402 LTDLSLPRIGEAFGGRDHTTVMHACERVHEEMMRDDELRATIERLSQAI 450 >gi|47525234|ref|YP_016331.1| chromosomal replication initiation protein [Geobacter sulfurreducens PCA] gi|61212658|sp|Q74GG6|DNAA_GEOSL RecName: Full=Chromosomal replication initiator protein DnaA gi|41152665|gb|AAR99581.1| chromosomal replication initiator protein DnaA [Geobacter sulfurreducens PCA] gi|298504141|gb|ADI82864.1| chromosomal replication initiator protein DnaA [Geobacter sulfurreducens KN400] Length = 445 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/467 (31%), Positives = 254/467 (54%), Gaps = 31/467 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ S L + + +W + +K+ N++ L P F++ + YL I + Sbjct: 2 EEVWLQAQSNLAKVLTHQTFNTWIEPIKYLGSKKNVLLLEAPNQFVRDRVSESYLPMILE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEK--TASSPSITKLSPINTNISKSPIILGKQTISPV 153 Q +E+L+ A P EK ++ +T P + P Sbjct: 62 SVQSLTDSQTKIELLI---AKPKTEKPKQPAASEVTAAEP-------------EACSGPD 105 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F TF+ G SN+ A AAQS+A + Y NPLFI+ VGLGKTHLL Sbjct: 106 HSTNLNPKYTFDTFVCGGSNQFAHAAAQSVANSPAGKY-----NPLFIYGGVGLGKTHLL 160 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N + R+ + T+E FM + +R ++ R +D+LLIDD+QF+ G Sbjct: 161 NAIGNHVLSVNRKARICFYTSEKFMNELINCLRYQKMDQFRNKFRKMDILLIDDIQFIAG 220 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H NSL +S KQ+V +D+ P ++ L+ R+RSR + G+ + D E + Sbjct: 221 KERTQEEFFHTFNSLYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQAPDTETK 280 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + +++ ++V + +A + TT+ REL+G +L S +T + Sbjct: 281 VAILRKK-----ADADHISLPDDVALFLASSSTTNVRELEGMLIRLGAVSSLTGKNITLD 335 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E+L ++ ++K++ +E IQ+ VA+H+++ DL S++R++ +V PRQ+A++L + Sbjct: 336 MAREVLKDII-VDKSKEITVEMIQKFVAEHFSLKVADLKSDKRLKALVIPRQIAIFLCRD 394 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +T S+PEIG RFG +DH+T++H+V+KVEK+L D L+ V+ L++ Sbjct: 395 LTKSSYPEIGERFGGKDHSTIIHSVKKVEKLLSQDFELRNTVDTLRK 441 >gi|85057979|ref|YP_453681.1| chromosomal replication initiation protein [Sodalis glossinidius str. 'morsitans'] gi|123725464|sp|Q2NX49|DNAA_SODGM RecName: Full=Chromosomal replication initiator protein DnaA gi|84778499|dbj|BAE73276.1| chromosomal replication initiator protein DnaA [Sodalis glossinidius str. 'morsitans'] Length = 464 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/477 (32%), Positives = 264/477 (55%), Gaps = 29/477 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQ-GVEILVRSVALPSVEKTASSPS---ITKLSPINTNISKSPIILG 146 + R + G + +V P+ + + +PS + + P + +P+ Sbjct: 63 LNDFCGTDAPLLRFEVGSKPPQMAVLQPASQHASEAPSQAAVARPRPSRPSWDNAPV--- 119 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ G Sbjct: 120 QPELS--YRSNVNPKHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTG 172 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLID Sbjct: 173 LGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLID 232 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 233 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIE 292 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 293 PPELETRVAIL-----MKKADENAIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 347 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+ Sbjct: 348 GRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQM 406 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM LSK +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 AMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 463 >gi|197334133|ref|YP_002154781.1| chromosomal replication initiator protein DnaA [Vibrio fischeri MJ11] gi|197315623|gb|ACH65070.1| chromosomal replication initiator protein DnaA [Vibrio fischeri MJ11] Length = 446 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 155/446 (34%), Positives = 249/446 (55%), Gaps = 27/446 (6%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR---IQGVEILVRSVALPSVEK-TASS 125 N + L P F+ W++++YL +I L E E+ + V+ P+V K TA+ Sbjct: 13 NTLTLFAPNRFVLDWVRDKYLNSINSLLNEFCGNDIPTLRFEVGSKPVSAPAVPKQTAAD 72 Query: 126 PSITKLSPINTNISKS---PIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVAL 177 + +P +S P + PV S ++ + F+ F+EG SN++ L Sbjct: 73 VAAATSAPAQLQARQSVHKP--WESEGAGPVAADLNHRSNVNPKHKFTNFVEGKSNQLGL 130 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AA+ +++ Y NPLF++ GLGKTHLL A+ NA + +P+ RVVY+ +E F Sbjct: 131 AAARQVSDNPGTAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDSKPDARVVYMHSERF 185 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 + A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ Sbjct: 186 VQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIIL 245 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 +DR P E+ ++ R++SR G++V + + E R +IL + + ED ++++ +EV Sbjct: 246 TSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLADEV 300 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQ 415 +A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ Sbjct: 301 AFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQ 359 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + VA++Y I DLLS RR R+V RPRQ+AM LSK +T S PEIG FG RDHTTVLHA Sbjct: 360 KTVAEYYKIKMADLLSKRRSRSVARPRQLAMALSKELTNHSLPEIGDAFGGRDHTTVLHA 419 Query: 476 VRKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E +K++ L R +S Sbjct: 420 CRKIAQLREESHDIKEDYSNLIRTLS 445 >gi|313111477|ref|ZP_07797278.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 39016] gi|310883780|gb|EFQ42374.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 39016] Length = 512 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/348 (40%), Positives = 211/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 175 SYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGY-----NPLFLYGGVGLGKTHLMHA 229 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 230 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 289 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 290 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 349 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + E K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 350 IL-----MKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELI 404 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 405 RESLKDLLAL-QDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 463 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 464 NHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 511 >gi|268593488|ref|ZP_06127709.1| DNA biosynthesis protein [Providencia rettgeri DSM 1131] gi|291310910|gb|EFE51363.1| DNA biosynthesis protein [Providencia rettgeri DSM 1131] Length = 463 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 152/475 (32%), Positives = 259/475 (54%), Gaps = 26/475 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYINNINEL 62 Query: 97 FQEE--------HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + H + I V P+ + ++ + + + I S K Sbjct: 63 LNDFCGTDAPALHFEVGNKPITV----APAATQARTAQQVPAFAVPSAPIKPSWDNSAKV 118 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S ++ + F F+EG SN++A AA+ +AE Y NPLF++ GLG Sbjct: 119 QPEVAYRSNVNPKHTFDNFVEGKSNQLARAAARQVAENPGGAY-----NPLFLYGGTGLG 173 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N+ ++ + N RVVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 174 KTHLLHAVGNSIMQHKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 233 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 293 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 ELETRVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 348 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 349 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 407 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|330987019|gb|EGH85122.1| chromosomal replication initiation protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 511 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 139 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 198 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 199 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 253 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 254 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 313 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 314 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 368 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 369 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 427 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 428 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 487 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 488 INELKESDADIREDYKNLLRTLT 510 >gi|302185840|ref|ZP_07262513.1| chromosomal replication initiation protein [Pseudomonas syringae pv. syringae 642] Length = 511 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 139 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 198 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 199 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 253 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 254 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 313 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 314 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 368 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 369 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 427 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 428 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 487 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 488 INELKESDADIREDYKNLLRTLT 510 >gi|298484609|ref|ZP_07002714.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160866|gb|EFI01882.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 511 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 139 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 198 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 199 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 253 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 254 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 313 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 314 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 368 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 369 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 427 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 428 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 487 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 488 INELKESDADIREDYKNLLRTLT 510 >gi|71737409|ref|YP_272316.1| chromosomal replication initiation protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|123734066|sp|Q48QK0|DNAA_PSE14 RecName: Full=Chromosomal replication initiator protein DnaA gi|71557962|gb|AAZ37173.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321688|gb|EFW77787.1| chromosomal replication initiation protein [Pseudomonas syringae pv. glycinea str. B076] Length = 511 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 139 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 198 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 199 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 253 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 254 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 313 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 314 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 368 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 369 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 427 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 428 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 487 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 488 INELKESDADIREDYKNLLRTLT 510 >gi|289628214|ref|ZP_06461168.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649104|ref|ZP_06480447.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330870075|gb|EGH04784.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 511 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 139 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 198 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 199 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 253 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 254 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 313 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 314 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 368 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 369 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 427 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 428 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 487 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 488 INELKESDADIREDYKNLLRTLT 510 >gi|331011887|gb|EGH91943.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 511 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 139 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 198 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 199 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 253 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 254 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 313 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 314 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 368 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 369 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 427 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 428 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 487 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 488 INELKESDADIREDYKNLLRTLT 510 >gi|197116403|ref|YP_002136830.1| chromosomal replication initiation protein [Geobacter bemidjiensis Bem] gi|226735813|sp|B5E7P6|DNAA_GEOBB RecName: Full=Chromosomal replication initiator protein DnaA gi|197085763|gb|ACH37034.1| chromosomal replication initiator protein DnaA [Geobacter bemidjiensis Bem] Length = 458 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 253/468 (54%), Gaps = 20/468 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+I+ + LK + Y++W LKF + + L VP++F + W+ ++YL I + Sbjct: 2 ENIWLEAQTNLKQVLTEQTYSTWIDPLKFLGATVDTIVLEVPSSFFQKWVTDKYLAMIKE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + +E V + P A K + ++ Sbjct: 62 AISAVNGKSYQIEFHV-AEEKPEAAHEAKPEKEAKPAREKERDKDKEKEKDREKEKKELV 120 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ ++ F +F+ G SN+ A A+Q++A + Y NPLFI+ VGLGKTHL+ A Sbjct: 121 PNLNPKYTFESFVSGPSNQFAYAASQAVANKPATNY-----NPLFIYGGVGLGKTHLVNA 175 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + P ++ Y ++E FM +++R ++ R +DLLLIDD+QF+ GK Sbjct: 176 IGNHILAKNPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQFMAGKE 235 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + E + + Sbjct: 236 ATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGVETKVA 295 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI-- 392 ILK + + +N+ ++V + +A ++ REL+G L+ +FA + EI Sbjct: 296 ILKKKSDMHA-----VNLPDDVALFLAEGANSNIRELEG---MLIRLEAFASLTGQEITL 347 Query: 393 --ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A E++ ++ +T+ + +E IQ+ VA+H+ I ++L S++R++T+V PRQ+A+Y+ + Sbjct: 348 SMAREVMKDII-VEKTRDITVEMIQKTVAEHFRIKVSELKSDKRIKTLVVPRQIAIYICR 406 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +T S+PEIG +FG +DH+T++H+V+K+EK + D K VE +++ Sbjct: 407 ELTKASYPEIGEKFGGKDHSTIIHSVKKIEKQIAGDDEFKATVEDIRK 454 >gi|289677549|ref|ZP_06498439.1| chromosomal replication initiation protein [Pseudomonas syringae pv. syringae FF5] Length = 383 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 223/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 + PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 9 NEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 68 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 69 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 123 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 124 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 183 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 184 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 238 Query: 358 MHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR Sbjct: 239 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQR 297 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 298 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 357 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 358 RKINELKESDADIREDYKNLLRTLT 382 >gi|313678901|ref|YP_004056640.1| chromosomal replication initiator protein dnaa [Oceanithermus profundus DSM 14977] gi|313151616|gb|ADR35467.1| chromosomal replication initiator protein DnaA [Oceanithermus profundus DSM 14977] Length = 442 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 164/466 (35%), Positives = 254/466 (54%), Gaps = 38/466 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ESI+ V ++ V + +WF R+K + + L VPT+F WI+ Y Sbjct: 4 ESIWENVLDYVRENVTSVEFDTWFARVKPLGLTGGALELGVPTSFAGDWIQKHY----GH 59 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-GKQTISPVF 154 L QE R+ A SP +L + + + I+ + + Sbjct: 60 LIQEALLRL-----------------GAQSPEF-RLKVVPGEVVQDKILEEDARAPAAAP 101 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ ++ F +F+ G N +A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 102 RTRLNPKYTFESFVVGPGNSMAHAAAMAVAEAPGKAY-----NPLFIYGGVGLGKTHLMH 156 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ + + +R P +RV Y++ E F SAIR + ++ R++D+LL+DD+QF+ GK Sbjct: 157 AVGHYARQRFPEIRVEYVSTETFTNDLISAIRSDRMNQFRERYRSVDMLLVDDVQFIAGK 216 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L + KQ++ +DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 217 ERTQEEFFHTFNTLYEDGKQILLTSDRPPREILTLESRLRSRFEWGLITDIQPPDLETRI 276 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +ILK E + ++EEVL +VAR V ++ REL+GA +L+ S + + +T ++ Sbjct: 277 AILK-----MNAERRGVQLSEEVLEYVARQVASNIRELEGALMRLIAYASLSGVTITPKV 331 Query: 393 ADELLSHLVNT-GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A L+ L +T GE M ++I VA+HY ++ DL S R + VVRPRQVAMYL + Sbjct: 332 AQNALADLFHTAGEAVTM--DEILAAVAEHYGVTPADLKSKGRSKEVVRPRQVAMYLIRQ 389 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +T S PEIG+ FG RDHTTVL+A +K+ K+L D L++ VE + Sbjct: 390 LTGASLPEIGQFFGGRDHTTVLYATQKIGKLLAEDAELRRTVEAFE 435 >gi|320331110|gb|EFW87081.1| chromosomal replication initiation protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330881908|gb|EGH16057.1| chromosomal replication initiation protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 511 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 139 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 198 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 199 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 253 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 254 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 313 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 314 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 368 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 369 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 427 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 428 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 487 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 488 INELKESDADIREDYKNLLRTLT 510 >gi|222528058|ref|YP_002571940.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor bescii DSM 6725] gi|312621128|ref|YP_004022741.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor kronotskyensis 2002] gi|222454905|gb|ACM59167.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor bescii DSM 6725] gi|312201595|gb|ADQ44922.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor kronotskyensis 2002] Length = 454 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 139/356 (39%), Positives = 214/356 (60%), Gaps = 12/356 (3%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 KQ P + L+ ++ F TF+ G++NR+A AA ++AE T NPLFI+ VG Sbjct: 101 KQDEKPEIVTQLNPKYTFETFVVGNNNRLAHAAALAVAETPPGERT---YNPLFIYGGVG 157 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LLID Sbjct: 158 LGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLLID 217 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 218 DIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQ 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSF 384 D+E R +IL + + P + +L +A + T+ REL+GA N+ L + Sbjct: 278 PPDFETRIAILSKKCQLEGTPVP-----QHILEFIASKIETNIRELEGALNKILAYSKLM 332 Query: 385 API--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 AP +T ++A++ L ++T K++ IEDIQ VA ++ I D S+RR R V PR Sbjct: 333 APDKEITLDLAEKALKEFIDTNTKKELTIEDIQAEVASYFGIRLEDFKSSRRSRNVAFPR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Q+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ TD K VE +K+ Sbjct: 393 QIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINTDSNTKNTVETIKK 448 >gi|15595199|ref|NP_064721.1| chromosomal replication initiation protein [Pseudomonas aeruginosa PAO1] gi|116053721|ref|YP_788156.1| chromosomal replication initiation protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218888747|ref|YP_002437611.1| chromosomal replication initiation protein [Pseudomonas aeruginosa LESB58] gi|254243115|ref|ZP_04936437.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 2192] gi|14194675|sp|Q9I7C5|DNAA_PSEAE RecName: Full=Chromosomal replication initiator protein DnaA gi|122262144|sp|Q02V80|DNAA_PSEAB RecName: Full=Chromosomal replication initiator protein DnaA gi|226735834|sp|B7V0N6|DNAA_PSEA8 RecName: Full=Chromosomal replication initiator protein DnaA gi|9945819|gb|AAG03391.1|AE004440_1 chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa PAO1] gi|11067000|gb|AAG28797.1|AF229442_1 DnaA [Pseudomonas aeruginosa] gi|115588942|gb|ABJ14957.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa UCBPP-PA14] gi|126196493|gb|EAZ60556.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 2192] gi|218768970|emb|CAW24728.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa LESB58] Length = 514 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/348 (40%), Positives = 211/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 177 SYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGY-----NPLFLYGGVGLGKTHLMHA 231 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 232 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 291 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 292 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 351 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + E K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 352 IL-----MKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELI 406 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 407 RESLKDLLAL-QDKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 465 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 466 NHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513 >gi|330952332|gb|EGH52592.1| chromosomal replication initiation protein [Pseudomonas syringae Cit 7] Length = 388 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 16 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 75 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 76 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 130 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 131 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 190 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 191 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 245 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 246 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 304 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 305 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 364 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 365 INELKESDADIREDYKNLLRTLT 387 >gi|229829518|ref|ZP_04455587.1| hypothetical protein GCWU000342_01610 [Shuttleworthia satelles DSM 14600] gi|229791949|gb|EEP28063.1| hypothetical protein GCWU000342_01610 [Shuttleworthia satelles DSM 14600] Length = 456 Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 149/454 (32%), Positives = 247/454 (54%), Gaps = 23/454 (5%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 W LK +NI +S T I + +T+ LF + S + + + LP Sbjct: 8 WAHILKTVKQEYNITDISFKTWLAPLEIFSVQKDTLVILFPTDESNQMSLNYISKKYELP 67 Query: 118 ----SVEKTASSPSITKLSPIN-TNISKSPIILGKQTISP---VFGSPLDSRFVFSTFIE 169 E T + + P TN+ S ++ ++ S L+ R+ F TF+ Sbjct: 68 LKVTIAEITGKEYHLQFILPGQATNLKPSDVVSQGHRLADRENFLSSHLNPRYTFDTFVV 127 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G++NR A TA+ ++AE Y NPLFI+ GLGKTHL+ AI N ++ P+ +V Sbjct: 128 GANNRFAQTASLAVAESPGQAY-----NPLFIYGGPGLGKTHLMHAIGNFILQDSPSKKV 182 Query: 230 VYLTAEYFMWRFASAIRDNCALNL---KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +Y+T+E F+ +IR+N + ++ +D R +D+LLIDD+QF+ GK Q EF H N Sbjct: 183 LYVTSEDFLNEVIESIRNNSSGSMSRFRDKYRTVDILLIDDIQFIIGKESTQEEFFHTFN 242 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L + KQ+V +DRPP E+E+LD RIRSR + G+ +G DYE R +IL+ R + Sbjct: 243 ALHSAGKQIVLTSDRPPKEMETLDTRIRSRFEWGLMADVGSPDYETRMAILRRRCEMD-- 300 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTG 404 + ++ +E+L ++A + ++ REL+GA N+L+ + + +T EIA L ++++ Sbjct: 301 ---RFSLPDEILDYIASNIKSNIRELEGALNKLIAYSNLEKTTITMEIASRELQNIISPD 357 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ + I MV++HY IS + ++S R V +PRQ+AMYL K MT IG Sbjct: 358 TPREITPQLIIEMVSEHYQISVDQMISKNRSSAVAKPRQIAMYLCKDMTSSPLEAIGSLL 417 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 G RDH+T++H K+ +D L K+++ +++ Sbjct: 418 GGRDHSTIIHGANKIADEYNSDEELHKQIDAIRK 451 >gi|114319167|ref|YP_740850.1| chromosomal replication initiation protein [Alkalilimnicola ehrlichii MLHE-1] gi|122312809|sp|Q0ACS7|DNAA_ALHEH RecName: Full=Chromosomal replication initiator protein DnaA gi|114225561|gb|ABI55360.1| chromosomal replication initiator protein DnaA [Alkalilimnicola ehrlichii MLHE-1] Length = 451 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 160/468 (34%), Positives = 252/468 (53%), Gaps = 24/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ +W + L+ + + L P F+ W+K + + IT+L Sbjct: 4 SLWKQCLRRLEQEIPDQQLNTWIRPLQAQEE-EDRLRLLAPNRFVLDWVKAHFADRITEL 62 Query: 97 FQEEH-SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + R +E+ + S A+ + + S+T SP + ++P Sbjct: 63 LSAQRPDRPPRLELQIGSSAVVAPPRRRQV-SVTTPSP-SAAADQTPATRSA-------A 113 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+S F F TF+EG SN++A A+ + E Y NPLF++ VGLGKTHL+ A Sbjct: 114 SNLNSNFTFDTFVEGKSNQLARAASMQVVENPGTAY-----NPLFLYGGVGLGKTHLMHA 168 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + NA ++R+P RV+YL +E F+ A++ N K R +D LLIDD+QF K Sbjct: 169 VGNAMLRRRPEARVLYLHSERFVADMVKALQHNAINEFKRHYRMVDALLIDDIQFFARKE 228 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ DR P E+ L+ R++SR G++V + + E R + Sbjct: 229 RSQEEFFHTFNALLEGEQQVIMTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELETRVA 288 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL +S+ +++ EV +A+ + ++ REL+GA ++V F +T E Sbjct: 289 IL-----MSKALQEGVDLPHEVAFFIAKRIRSNIRELEGALRRVVANAQFTGQEITVEFT 343 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + I++IQ+ VA++Y I DLLS RR R++ RPRQ+AM L+K +T Sbjct: 344 KEALRDLLAL-QDKLVTIDNIQKTVAEYYKIRVADLLSKRRSRSITRPRQMAMALAKELT 402 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RKVE + D ++++ L R +S Sbjct: 403 SHSLPEIGDAFGGRDHTTVLHACRKVESLCAEDSRIEEDYSNLLRTLS 450 >gi|295115474|emb|CBL36321.1| chromosomal replication initiator protein DnaA [butyrate-producing bacterium SM4/1] Length = 456 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/452 (31%), Positives = 254/452 (56%), Gaps = 29/452 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + +S+ N + + VP +++ +Y +T E I G+E V + Sbjct: 27 FKTWLLPTEAYSMKGNTLQILVPDIHFLGYMQKKYGFLLTVAIAE----ITGIECQVDFI 82 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 +++ S +L +T++ + I + L+ R+ F TF+ G++N Sbjct: 83 TREQIKEEPEEVSENQLLSHSTDVDQQVIQ----------NANLNPRYTFDTFVVGANNN 132 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A A+ ++AE Y NPLFI+ VGLGKTHL+ +I + ++ P +++Y+T+ Sbjct: 133 LAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSIGHFILQNNPKAKILYVTS 187 Query: 235 EYFMWRFASAIRDNCALN---LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 E F AIR+ ++ ++ RN D+LLIDD+QF+ GK Q EF H N+L ++ Sbjct: 188 EKFTNELIDAIRNKNNISTTEFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNALYEA 247 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R +IL+ + +E Sbjct: 248 KKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK-----EELEGY 302 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKM 409 NI+ EV+ ++A V ++ REL+GA ++V +T E+A+E L L++ G +++ Sbjct: 303 NIDNEVIKYIATHVKSNIRELEGALTKIVALSKLNKREITTELAEEALKDLISPGGAREI 362 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 E I ++V+ H+ I+ D+ S +R + +V PRQ+AMYL + MT IG+ GDRDH Sbjct: 363 TPELIIQVVSDHFGITPADISSKKRNKEIVYPRQIAMYLCRTMTGTPLQGIGKYLGDRDH 422 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TT++H K+ +E + +L+ +E+LK+ +S Sbjct: 423 TTIIHGAEKITADMEKNESLRNTIEVLKKKLS 454 >gi|289667649|ref|ZP_06488724.1| chromosomal replication initiation protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 442 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 163/482 (33%), Positives = 248/482 (51%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + + E + S + + + Sbjct: 48 QVRERYLPRIRELL---------------AYFCGNGEVALAVGSRPRAPEPAPAPVAAAV 92 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 I P F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 93 APQAAPIVP-FAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|119773155|ref|YP_925895.1| chromosomal replication initiation protein [Shewanella amazonensis SB2B] gi|166215327|sp|A1S1G9|DNAA_SHEAM RecName: Full=Chromosomal replication initiator protein DnaA gi|119765655|gb|ABL98225.1| chromosomal replication initiator protein DnaA [Shewanella amazonensis SB2B] Length = 457 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 157/474 (33%), Positives = 260/474 (54%), Gaps = 30/474 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ +V L P F+ W++++Y+ +I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQAEMEGDTLV-LYAPNRFVLDWVRDKYINSINQF 62 Query: 97 FQEE---HSRIQGVEILVR-SVALPSVEKTASSPSITKLSPINTNISK-SPIILG-KQTI 150 F E+ ++ +I R S + A + + P N+ +S+ P + + I Sbjct: 63 FTEQLGDNAPKLRFDIGSRPSAKPQAPAPAAVKAAAPQPKPGNSFVSQPEPAVSNHRSNI 122 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P + F F+EG SN++ AA +AE Y NPLF++ GLGKT Sbjct: 123 NPTY--------QFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKT 169 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 170 HLLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQF 229 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + Sbjct: 230 FANKDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPEL 289 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PI 387 E R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F PI Sbjct: 290 ETRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI 344 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T + E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+AM Sbjct: 345 -TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMA 402 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LSK +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 403 LSKELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 456 >gi|146280398|ref|YP_001170551.1| chromosomal replication initiation protein [Pseudomonas stutzeri A1501] gi|145568603|gb|ABP77709.1| chromosomal replication initiator protein DnaA [Pseudomonas stutzeri A1501] Length = 514 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 177 SYLNRTFTFENFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 231 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 232 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFAKKE 291 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E++ L+ R++SR G++V + + E R + Sbjct: 292 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVA 351 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR-HSFAPILTAEIA 393 IL + + + K+++ + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 352 IL-----MKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHAHFMGRDITIELI 406 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 407 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 465 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ ETD ++++ + L R ++ Sbjct: 466 NHSLPEIGDAFGGRDHTTVLHACRKIAELRETDADIREDYKNLLRTLT 513 >gi|330890249|gb|EGH22910.1| chromosomal replication initiation protein [Pseudomonas syringae pv. mori str. 301020] Length = 343 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 6 SYLNRTFTFENFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 60 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 61 VGNPLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKE 120 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 121 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 180 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+++ + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 181 IL-----MKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 235 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 236 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 294 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 295 NHSLPEIGDVFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 342 >gi|237801664|ref|ZP_04590125.1| chromosomal replication initiation protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024523|gb|EGI04579.1| chromosomal replication initiation protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 511 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ +Q V G S L+ F F F+EG SN++A AA Sbjct: 139 PSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 198 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 199 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 253 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +D Sbjct: 254 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSD 313 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 314 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 368 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 369 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 427 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 428 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 487 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 488 INELKESDADIREDYKNLLRTLT 510 >gi|254515869|ref|ZP_05127929.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR5-3] gi|219675591|gb|EED31957.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR5-3] Length = 483 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 159/496 (32%), Positives = 267/496 (53%), Gaps = 54/496 (10%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +++++ P + +W + L+ + + L P F+ ++ ++Y E I +L +E S Sbjct: 1 MQDELPPQQFNTWIRPLQ-ATQTDQALQLLAPNRFICDFVADKYGELIEQLLREVQSGEA 59 Query: 106 GVEILV-----RSVALPSVEKTASSPSITKLSPINTNISKSPIILGK------QTISPVF 154 +++ + R+ A+ +V AS+P +++ + I +G Q+ +P Sbjct: 60 ELQLEIAAGSSRATAVQAV-PLASTPPVSRGPALAVVGGTESITVGDPQESVPQSDTPAR 118 Query: 155 GSP--------------------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 +P L S + FS F+EG SN++AL AA ++E Sbjct: 119 AAPSLVETTLHYGQASKSEVHEALQHQHNLVSNYTFSNFVEGKSNQLALAAANQVSENPG 178 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 Y NPLF++ VGLGKTHL+ A+ NA +PN R+VYL +E F+ A++ N Sbjct: 179 GAY-----NPLFLYGGVGLGKTHLMHAVGNALKINKPNARIVYLHSERFVADMVKALQLN 233 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + K R++D LLIDD+QF K Q EF H N+LL+ +Q++ DR P E++ Sbjct: 234 AIADFKRYYRSVDALLIDDIQFFAKKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEIDG 293 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 L+ R++SR G++V + D E R +IL N+ + + +L++ + +A+ + ++ Sbjct: 294 LEERLKSRFGWGLTVAVEPPDLETRVAILMNKASQA-----RLDLPPDAAFFIAQRIRSN 348 Query: 368 GRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 REL+GA +++ +F PI ++ E L L+ + K++ +++IQR VA++Y I Sbjct: 349 VRELEGALKRVIASANFTRRPI-DVDLVKESLKDLLAL-QDKQVSLDNIQRTVAEYYKIK 406 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 DL S RR R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RK+ ++ ET Sbjct: 407 VADLNSRRRNRSVARPRQVAMALAKELTNYSLPEIGDAFGGRDHTTVLHACRKIRELRET 466 Query: 486 DITLKKEVELLKRLIS 501 + ++ + L RL++ Sbjct: 467 SSDIHEDYKNLLRLLT 482 >gi|78042923|ref|YP_361492.1| chromosomal replication initiation protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995038|gb|ABB13937.1| chromosomal replication initiator protein DnaA [Carboxydothermus hydrogenoformans Z-2901] Length = 454 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/458 (33%), Positives = 251/458 (54%), Gaps = 24/458 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E ++ V LKN V + W + ++ L N + + VP F K W++ Y I Sbjct: 6 VEELWEQVMEVLKNHVNKPSWDMWIKSIRPLGFLENTILVEVPNKFAKDWLEEHYASLIK 65 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + I +I + V +P+ S TK + + G +F Sbjct: 66 HIL----NLITNEDINFKLV-VPNESAIEDSEGKTKSKKNSPKKPSKFLEEG------IF 114 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ ++ F TF+ G+SNR A A ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 115 FT-LNPKYTFETFVVGNSNRFAHAACLAVAESPAEAY-----NPLFIYGGVGLGKTHLMH 168 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + +K +P ++V Y+T E F ++I+D+ ++ R+ID+LLIDD+QFL+ K Sbjct: 169 AIGHYILKNKPEMKVAYVTTEKFTNDLINSIKDDTTEEFRNKYRSIDVLLIDDIQFLEKK 228 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V ++DR P EL +L+ R+RSR + G+ + D E R Sbjct: 229 ERTQEEFFHTFNALYEANKQIVISSDRTPKELSTLEDRLRSRFEWGLITDIQPPDLETRI 288 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEI 392 +IL+ + + L++++ VL +A + ++ REL+GA ++V + +T ++ Sbjct: 289 AILRKKAQLDN-----LHVDDAVLNFIANEIVSNIRELEGALIRVVAYAGLHGEPITVDL 343 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L+ + K + I IQ++VA Y ++ +DL + +R ++V PRQVAMYL + + Sbjct: 344 AAKALKDLLPSNHVKPITIPLIQQVVANFYGLTVDDLKAKKRTKSVAFPRQVAMYLCREL 403 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 T S P+IG FG RDHTTV+HA K+++ L++D LK Sbjct: 404 TDASLPKIGEEFGGRDHTTVIHAHEKIQQDLQSDPNLK 441 >gi|327478613|gb|AEA81923.1| chromosomal replication initiation protein [Pseudomonas stutzeri DSM 4166] Length = 486 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 149 SYLNRTFTFENFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 203 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 204 VGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFAKKE 263 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E++ L+ R++SR G++V + + E R + Sbjct: 264 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIDGLEERLKSRFGWGLTVAVEPPELETRVA 323 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR-HSFAPILTAEIA 393 IL + + + K+++ + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 324 IL-----MKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHAHFMGRDITIELI 378 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 379 RESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELT 437 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ ETD ++++ + L R ++ Sbjct: 438 NHSLPEIGDAFGGRDHTTVLHACRKIAELRETDADIREDYKNLLRTLT 485 >gi|254490242|ref|ZP_05103432.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxidans DMS010] gi|224464589|gb|EEF80848.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxydans DMS010] Length = 418 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 150/435 (34%), Positives = 243/435 (55%), Gaps = 25/435 (5%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQE-EHSRIQGVEILVRSVAL---PSVEKTASSPSIT 129 L P ++KAW++ + I L I V I V + A+ PS +T ++ T Sbjct: 1 LLAPNPYVKAWVQEQLESQINTLIAALSQGSIDKVAIEVGTKAMGNMPSRRQTDATEPET 60 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV-DS 188 +N+ S++ P G+P++ F F +++EG SN++A A+ +AE + Sbjct: 61 TTPLVNSKPSET-------KAEPAIGNPMNPLFTFDSYVEGKSNQIARAASLHVAEAPGT 113 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 GY NPLF++ GLGKTHL+ A+ N + P RV+YL++E F+ +A+R+N Sbjct: 114 SGY-----NPLFLYGGTGLGKTHLMLAVGNKIKQDNPKARVIYLSSERFVQDMITALRNN 168 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 K R+ D LLIDD+QF K Q EF + NSLL+ +Q++ DR P E+E+ Sbjct: 169 AIDQFKSHYRSADALLIDDIQFFAKKERSQEEFFYTFNSLLEGQRQIILTCDRFPKEVEN 228 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 LD R++SRL G++V + + E R +IL I + + + + E+V +A+ + ++ Sbjct: 229 LDERLQSRLGWGLTVAIEPPELETRVAIL-----IKKAQQNLITLPEDVAFFIAKRIKSN 283 Query: 368 GRELDGAFNQ-LVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 R+L+GA + L F L+ ++A E L L+ + K + +E IQ+ V +++ + Sbjct: 284 VRDLEGALQRVLAFSRFTNQPLSIDMAQEALKDLLALHQ-KLVTLESIQKTVGEYFKVRV 342 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 +DLL+ +R R++ RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RKV ++ E+D Sbjct: 343 SDLLAKKRTRSIARPRQIAMALAKELTSHSLPEIGDAFGGRDHTTVLHACRKVAELKESD 402 Query: 487 ITLKKEVELLKRLIS 501 + ++ L R +S Sbjct: 403 TRVAEDYRNLLRTLS 417 >gi|238898807|ref|YP_002924489.1| DNA replication initiator protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466567|gb|ACQ68341.1| DNA replication initiator protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 454 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 151/468 (32%), Positives = 256/468 (54%), Gaps = 25/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + ++ ++ N + P F+ W++++Y++ I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPIQVE-LIDNTLTFYAPNRFVLDWVRDKYIDHICHL 66 Query: 97 FQE-EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + V + + P ++ + P+ K S + SPI G V+ Sbjct: 67 LNDFSPQEVPSLRFEVGNKSSPQIDSETNRPASLKPS-----WAPSPIKSGY-----VYR 116 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F TF+EG SN++A AA ++ G NPLF++ GLGKTHLL A Sbjct: 117 SNVNLKNTFDTFVEGKSNQLARAAAIQVS-----GNPGAAYNPLFLYGDTGLGKTHLLHA 171 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N I + +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 172 VGNGIIAHKTKAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 231 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R + Sbjct: 232 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVA 291 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 292 IL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFV 346 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L L+ E K + I++IQR VA +Y I DLLS RR R V RPRQ+AM L+K +T Sbjct: 347 RDALRDLLALQE-KLVTIDNIQRTVAAYYKIKVADLLSKRRSRVVARPRQMAMALAKELT 405 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 406 NHSLPEIGAAFGGRDHTTVLHACRKIEQLCEESHNMKEDFSNLIRTLS 453 >gi|253698657|ref|YP_003019846.1| chromosomal replication initiation protein [Geobacter sp. M21] gi|259645251|sp|C6E7Q5|DNAA_GEOSM RecName: Full=Chromosomal replication initiator protein DnaA gi|251773507|gb|ACT16088.1| chromosomal replication initiator protein DnaA [Geobacter sp. M21] Length = 460 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 144/473 (30%), Positives = 256/473 (54%), Gaps = 28/473 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+I+ + LK + Y++W LKF + + L VP++F + W+ ++YL I + Sbjct: 2 ENIWLEAQTNLKQVLTEQTYSTWIDPLKFLGATVDTIVLEVPSSFFQKWVTDKYLAMIKE 61 Query: 96 LFQEEHSRIQGVEILV---RSVALPS--VEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +E V + A P EK + K+ + Sbjct: 62 AISAVNGKSYQIEFHVADEKPEAAPEEKPEKEGKPAREKEKDKDKEKEKDREKEKDKKEL 121 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P L+ ++ F +F+ G SN+ A A+Q++A + Y NPLFI+ VGLGKT Sbjct: 122 VP----NLNPKYTFESFVSGPSNQFAYAASQAVANKPATNY-----NPLFIYGGVGLGKT 172 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI N + + P ++ Y ++E FM +++R ++ R +DLLLIDD+QF Sbjct: 173 HLVNAIGNHILAKNPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQF 232 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + Sbjct: 233 MAGKEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGV 292 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E + +ILK + + +N+ ++V + +A ++ REL+G L+ +FA + Sbjct: 293 ETKVAILKKKSDMHA-----VNLPDDVALFLAEGANSNIRELEG---MLIRLEAFASLTG 344 Query: 390 AEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 EI A E++ ++ +T+ + +E IQ+ VA+H+ I ++L S++R++T+V PRQ+A Sbjct: 345 QEITLSMAREVMKDII-VEKTRDITVEMIQKTVAEHFRIKVSELKSDKRIKTLVVPRQIA 403 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +Y+ + +T S+PEIG +FG +DH+T++H+V+K+EK + D K VE +++ Sbjct: 404 IYICRELTKASYPEIGEKFGGKDHSTIIHSVKKIEKQMAGDDEFKASVEDIRK 456 >gi|170022263|ref|YP_001718768.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis YPIII] gi|186893345|ref|YP_001870457.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis PB1/+] gi|169748797|gb|ACA66315.1| chromosomal replication initiator protein DnaA [Yersinia pseudotuberculosis YPIII] gi|186696371|gb|ACC87000.1| chromosomal replication initiator protein DnaA [Yersinia pseudotuberculosis PB1/+] Length = 450 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 152/456 (33%), Positives = 251/456 (55%), Gaps = 25/456 (5%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI-LVR- 112 ++ W + L+ + N + L P F+ W++++YL I L + G E+ L+R Sbjct: 10 FSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGLLND----FCGTEVPLLRF 64 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-----FGSPLDSRFVFSTF 167 V + ++P +S +++S + SP + S ++ + F F Sbjct: 65 EVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDNSPAQPELSYRSNVNPKHTFDNF 124 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 +EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+ N Sbjct: 125 VEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKANA 179 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 +VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+ Sbjct: 180 KVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNA 239 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + + Sbjct: 240 LLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAD 294 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGE 405 + + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ E Sbjct: 295 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE 354 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 355 -KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFG 413 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 414 GRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 449 >gi|270264119|ref|ZP_06192386.1| chromosomal replication initiator protein DnaA [Serratia odorifera 4Rx13] gi|270041768|gb|EFA14865.1| chromosomal replication initiator protein DnaA [Serratia odorifera 4Rx13] Length = 463 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 153/479 (31%), Positives = 258/479 (53%), Gaps = 34/479 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQGVEILVRSVALPSVEKTASSPS------ITKLSPINTNISKSPII 144 + R + + + +V + S+PS + P N + P + Sbjct: 63 LNDFCGTDAPLLRFEVGSKPLTQIISQTVTASVSAPSAPVVRAVAPSRPSWDNAAPQPEL 122 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + ++P + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 123 SYRSNVNP--------KHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 169 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LL Sbjct: 170 TGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 229 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 230 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 289 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 290 IEPPELETRVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 344 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 345 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPR 403 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 404 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|312134083|ref|YP_004001421.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor owensensis OL] gi|311774134|gb|ADQ03621.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor owensensis OL] Length = 454 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 140/355 (39%), Positives = 216/355 (60%), Gaps = 13/355 (3%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L+ ++ F TF+ G++NR+A AA ++AE T NPLFI+ VGLGKTH Sbjct: 106 PEITTSLNPKYTFETFVVGNNNRLAHAAALAVAETPPGEKT---YNPLFIYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LLIDD+QFL Sbjct: 163 LMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLLIDDIQFL 222 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ + D+E Sbjct: 223 GGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPI-- 387 R +IL + + P + +L +A + T+ REL+GA N+ L + AP Sbjct: 283 TRIAILSKKCQLEGTPVP-----QHILEFIASKIETNIRELEGALNKILAYSKLMAPDKE 337 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+A++ L ++T K++ IEDIQ VA ++NI D S+RR R V PRQ+AMY Sbjct: 338 ITLELAEKALKEFIDTNTKKELTIEDIQAEVASYFNIKLEDFKSSRRSRNVAFPRQIAMY 397 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL-KRLIS 501 L++ +T S P+IG FG +DHTTVLHA K+++++ +D + VE + KRLI+ Sbjct: 398 LARELTNISLPKIGEAFGGKDHTTVLHACEKIKELINSDHNTRNVVETIKKRLIN 452 >gi|169632030|ref|YP_001705766.1| chromosomal replication initiation protein [Acinetobacter baumannii SDF] gi|226735532|sp|B0VMK0|DNAA_ACIBS RecName: Full=Chromosomal replication initiator protein DnaA gi|169150822|emb|CAO99422.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter baumannii] Length = 465 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 266/481 (55%), Gaps = 37/481 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-EGILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ R++ VEILV S L S E+ A++ + + +PI GK+ PV Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSSEQPATTTAALQTAPIPQPAK------GKREPEPV 114 Query: 154 FGSP----------LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ +F FS F+EG SN++A T + + ++ + + NPLF++ Sbjct: 115 ANTAVSSKSSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLY 169 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DL Sbjct: 170 GPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDL 229 Query: 263 LLIDDMQFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+S Sbjct: 230 LLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLS 289 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF- 380 V + D E R IL + + E+ +++ + +A+ V + REL+GA N++V Sbjct: 290 VGVEPPDIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAI 344 Query: 381 -RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 R API + + L L T + +E+IQR+V++++ I +L+ +R R Sbjct: 345 SRFKGAPIDLDVVRESLKDVLAIRART--ISVENIQRVVSEYFRIPLKELVGPKRTRIYA 402 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL Sbjct: 403 RPRQLAMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRL 462 Query: 500 I 500 + Sbjct: 463 L 463 >gi|89092264|ref|ZP_01165218.1| chromosomal replication initiator protein, DnaA [Oceanospirillum sp. MED92] gi|89083352|gb|EAR62570.1| chromosomal replication initiator protein, DnaA [Oceanospirillum sp. MED92] Length = 543 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 135/345 (39%), Positives = 214/345 (62%), Gaps = 13/345 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F +F++G SN++AL AA+ + D+ G V NPLFI+ VGLGKTHL+ A Sbjct: 206 SNLNQSFTFESFVQGKSNQLALAAARQVG--DNPG---VSYNPLFIYGGVGLGKTHLMHA 260 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +KR PN ++VYL +E F+ A++ N + K R++D LLIDD+QF GK Sbjct: 261 VGNEMLKRNPNAKIVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGKE 320 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R + Sbjct: 321 RSQEEFFHTFNALLEGGQQMILTSDRYPKEINGVEERLKSRFGWGLTVAIEPPELETRVA 380 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + ++ ++ + ++ +A+ + ++ REL+GA +++ F +T Sbjct: 381 IL-----MKKADEARVRLPDDAAFFLAQKIRSNVRELEGALKRVIANAHFTGSAITTPFI 435 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K++ I++IQR+VA +Y I +DLLS RR R+V RPRQVAM LSK +T Sbjct: 436 KESLKDLLAL-QDKQVSIDNIQRVVADYYKIKVSDLLSKRRSRSVARPRQVAMSLSKELT 494 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 S PEIG FG RDHTTVLHA RK++++ E+D ++++ + L R Sbjct: 495 NHSLPEIGNAFGGRDHTTVLHACRKIKELRESDTDIREDYQNLLR 539 >gi|323177714|gb|EFZ63298.1| chromosomal replication initiator protein DnaA [Escherichia coli 1180] Length = 444 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 150/442 (33%), Positives = 242/442 (54%), Gaps = 21/442 (4%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRSVA-LPSVEKTASS 125 N + L P F+ W++++YL I L F + E+ + V P T++ Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNV 72 Query: 126 PSITKLSPINTNISKSPIILGKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + +++ + G I P + S ++ + F F+EG SN++A AA+ Sbjct: 73 AAPAQVAQTQPQRAAPSTRSGWDNIPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAAR 132 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 133 QVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDM 187 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 188 VKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDR 247 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P E+ ++ R++SR G++V + + E R +IL I + ++ + + EV + Sbjct: 248 YPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----IKKADENDIRLPGEVAFFI 302 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA Sbjct: 303 AKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVA 361 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ Sbjct: 362 EYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 421 Query: 480 EKMLETDITLKKEVELLKRLIS 501 E++ E +K++ L R +S Sbjct: 422 EQLREESHDIKEDFSNLIRTLS 443 >gi|210624036|ref|ZP_03294153.1| hypothetical protein CLOHIR_02105 [Clostridium hiranonis DSM 13275] gi|210153243|gb|EEA84249.1| hypothetical protein CLOHIR_02105 [Clostridium hiranonis DSM 13275] Length = 462 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 145/431 (33%), Positives = 248/431 (57%), Gaps = 26/431 (6%) Query: 67 VLHN-IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS 125 +LHN +++ ++F K + NRY + + +E +R + +L + S+ K S Sbjct: 47 LLHNDTLYICANSDFNKDILNNRYSSILAGVVKEVTARDIKIVVLDNEKEMDSILKEIDS 106 Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 +P ++++KSP K + S L+ ++ F TF+ G+SN A A ++AE Sbjct: 107 ------NP-KSSVAKSPKAPTK------YESNLNPKYTFDTFVIGNSNSFAHAACVAVAE 153 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 + Y NPLF++ VGLGKTHL+QAI + ++ +VVY+++E F ++I Sbjct: 154 SPAKSY-----NPLFLYGGVGLGKTHLMQAIGHHILEADSTQKVVYVSSEKFTNELVNSI 208 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 +D+ ++ RN+D+LLIDD+QF+ GK Q EF H N+L ++ KQ++ ++DRPP + Sbjct: 209 KDDKNEEFRNKYRNVDVLLIDDVQFIAGKERTQEEFFHTFNTLHEANKQIIISSDRPPKD 268 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 + +L+ R+RSR + G+ + D+E R +IL+ + + E P +EV ++A+ V Sbjct: 269 IPTLEERLRSRFEMGLITDIQPPDFETRIAILRKKAQMDNTEVP-----DEVTDYIAKNV 323 Query: 365 TTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 ++ REL+GA +++ S ++ E+A E L ++ + T ++ + I+ VA+ ++ Sbjct: 324 KSNIRELEGALTRVMAYSSLTKKKVSLEVATEALKDIIVSYNTSEINVVRIKEKVAEVFD 383 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 I D S +R R + PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA K+ K L Sbjct: 384 IKMEDFNSKKRTRAIAYPRQIAMYLSRDLTDLSLPKIGEEFGGRDHTTVIHACDKISKDL 443 Query: 484 ETDITLKKEVE 494 + +I LK +VE Sbjct: 444 KENIDLKLKVE 454 >gi|290473095|ref|YP_003465956.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Xenorhabdus bovienii SS-2004] gi|289172389|emb|CBJ79156.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Xenorhabdus bovienii SS-2004] Length = 462 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 155/482 (32%), Positives = 261/482 (54%), Gaps = 41/482 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVREKYINNINLL 62 Query: 97 FQEEHSRIQGVEI-LVR--------------SVALPSVEKTASSPSITKLSPINTNISKS 141 + G E+ L+R S + + A++PS + P N Sbjct: 63 LND----FCGPEVPLLRFEVGNKPVSPNQSTSQKIIANMPIATAPSSLSVRPSWDNAKAQ 118 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P + + ++P + F F+EG SN++A AA+ +A+ Y NPLF+ Sbjct: 119 PELSYRSNVNP--------KHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFL 165 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL A+ N+ + R+ N +VVY+ +E F+ A+++N K R++D Sbjct: 166 YGGTGLGKTHLLHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVD 225 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G+ Sbjct: 226 ALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGL 285 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + E R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ Sbjct: 286 TVAIEPPELETRVAIL-----MKKADENQIQLPGEVAFFIAKRLRSNVRELEGALNRVIA 340 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V Sbjct: 341 NANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVA 399 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R Sbjct: 400 RPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRT 459 Query: 500 IS 501 +S Sbjct: 460 LS 461 >gi|311277333|ref|YP_003939564.1| chromosomal replication initiator protein DnaA [Enterobacter cloacae SCF1] gi|308746528|gb|ADO46280.1| chromosomal replication initiator protein DnaA [Enterobacter cloacae SCF1] Length = 465 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 155/477 (32%), Positives = 257/477 (53%), Gaps = 28/477 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEI--LVRSVALPSVEKTASSPS---ITKLSPINTNISKSPIIL-GKQTI 150 + G ++ L V V + P+ + +P G + Sbjct: 63 LND----FCGTDVPQLRFEVGTKPVTQAVREPAHVAAPAQAAQMQMPRAAPAARPGWDNV 118 Query: 151 ----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ G Sbjct: 119 PAPAEPSYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTG 173 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLID Sbjct: 174 LGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLID 233 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 234 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIE 293 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 294 PPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFT 348 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+ Sbjct: 349 GRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQM 407 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 408 AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|157368281|ref|YP_001476270.1| chromosomal replication initiation protein [Serratia proteamaculans 568] gi|167016905|sp|A8G7Q2|DNAA_SERP5 RecName: Full=Chromosomal replication initiator protein DnaA gi|157320045|gb|ABV39142.1| chromosomal replication initiator protein DnaA [Serratia proteamaculans 568] Length = 463 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 154/479 (32%), Positives = 261/479 (54%), Gaps = 34/479 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS------RIQGVEILVRSVALPSVEKTASSPS--ITKLS----PINTNISKSPII 144 + R + + + +V + S+PS I +++ P N + P + Sbjct: 63 LNDFCGTDAPLLRFEVGSKPLSQIISQTVTASVSAPSAPIVRVAAPSRPSWDNAAPQPEL 122 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + ++P + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 123 SYRSNVNP--------KHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 169 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LL Sbjct: 170 TGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 229 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 230 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 289 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 290 IEPPELETRVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 344 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 345 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPR 403 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 404 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|325926219|ref|ZP_08187577.1| chromosomal replication initiator protein DnaA [Xanthomonas perforans 91-118] gi|325543401|gb|EGD14826.1| chromosomal replication initiator protein DnaA [Xanthomonas perforans 91-118] Length = 442 Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 163/482 (33%), Positives = 251/482 (52%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + VAL + + + + + +P+ Sbjct: 48 QVRERYLPRIRELLAYFAGNGE--------VALAVGSRPRAPEPAPAAAAVPSAPQAAPM 99 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 + F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 100 V--------PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|289662284|ref|ZP_06483865.1| chromosomal replication initiation protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 442 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 164/482 (34%), Positives = 248/482 (51%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + VAL + + +PI Sbjct: 48 QVRERYLPRIRELLAYFCGNGE--------VALAVGSRPRAPEPAPAPVAAALAPQAAPI 99 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 + F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 100 V--------PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|228931507|ref|ZP_04094417.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228828150|gb|EEM73874.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 313 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 129/315 (40%), Positives = 198/315 (62%), Gaps = 12/315 (3%) Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 ++AE + Y NPLFI+ VGLGKTHL+ AI + I+ PN +VVYL++E F F Sbjct: 2 AVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNEF 56 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q EF H N+L + +KQ+V ++DR Sbjct: 57 INSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSDR 116 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PP E+ +L+ R+RSR + G+ + D E R +IL+ + L+I EV++++ Sbjct: 117 PPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKKAKAE-----GLDIPNEVMLYI 171 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A + ++ REL+GA ++V S + A++A E L ++ + K + I DIQ+ V Sbjct: 172 ANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALRDIIPNSKPKIISIYDIQKAVG 231 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 Y + D + +R ++V PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA K+ Sbjct: 232 DVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDSSLPKIGEEFGGRDHTTVIHAHEKI 291 Query: 480 EKMLETDITLKKEVE 494 K+L+TD L+K+VE Sbjct: 292 SKLLKTDTQLQKQVE 306 >gi|310825634|ref|YP_003957991.1| chromosomal replication initiator protein [Eubacterium limosum KIST612] gi|308737368|gb|ADO35028.1| chromosomal replication initiator protein [Eubacterium limosum KIST612] Length = 449 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 146/450 (32%), Positives = 242/450 (53%), Gaps = 30/450 (6%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S +K ++ Y +WF K ++ +L +F + ++ RY IT + + Sbjct: 14 SLIKEEMSELSYNTWFTNTKPLKIIGGTFYLISDNDFERGMLETRYKALITNALSQVMEQ 73 Query: 104 IQGVEILVRSVALP-SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 V+I++ +P + E++A P + NT S + G ++ ++ Sbjct: 74 ECKVQIVLSEKEVPDTAEQSAPMPK----NEGNTKSSNN-------------GGSMNPKY 116 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ G +NR A A +++E S R NPLFI+ VGLGKTHL+QAI N + Sbjct: 117 TFEKFVIGENNRFAHAACVAVSEAPSE-----RYNPLFIYGGVGLGKTHLMQAIGNYILS 171 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 P +VVY++ E F F AI++ ++ ++ RN+D+LLIDD+QFL GK Q EF Sbjct: 172 YAPTKKVVYVSCEKFTNEFIDAIQNQNNIDFRNKYRNVDILLIDDIQFLAGKDGTQEEFF 231 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L + KQ+V ++DRPP E+ L+ R+RSR + G+ + ++E R +IL+ + A Sbjct: 232 HTFNALHEENKQIVISSDRPPKEIPKLEERLRSRFEMGLITDISAPNFETRIAILRKK-A 290 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHL 400 S KE+ I +VL +A ++ ++ REL+GA +V + + E A + L + Sbjct: 291 ESYKEE----IPNDVLSFIADSIHSNIRELEGALTTVVAYSKLHGEPICLETAKDALKDI 346 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 E + I+ M AK++N++ D+ S +R + + PRQVAMYL++ +T S P+I Sbjct: 347 FKAKENIVINSTYIKEMTAKYFNVTIEDIDSKKRTKAISLPRQVAMYLTRDLTDLSLPKI 406 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 G FG RDH+TV+HA +K+ + +E + K Sbjct: 407 GEEFGGRDHSTVIHACQKINEEMEANTDFK 436 >gi|152994044|ref|YP_001338879.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MWYL1] gi|189044598|sp|A6VR65|DNAA_MARMS RecName: Full=Chromosomal replication initiator protein DnaA gi|150834968|gb|ABR68944.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MWYL1] Length = 516 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 214/349 (61%), Gaps = 13/349 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L++ F F FIEG SN++A AA +AE Y NPLFI+ VGLGKTHL+Q Sbjct: 178 GANLNNSFTFDNFIEGKSNQLAHAAALQVAENPGGAY-----NPLFIYGGVGLGKTHLMQ 232 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ ++ PN +VVYL +E F+ A++ N + K R++D LLIDD+QF GK Sbjct: 233 AVGTEMMRHNPNAKVVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGK 292 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ DR P E++ L+ R++SR G++V + + E R Sbjct: 293 DRTQEEFFHTFNALLEGGQQMILTCDRYPKEIQGLEDRLKSRFGWGLTVAIEPPELETRV 352 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ + ++ + +A+ + ++ REL+GA +++ F +T + Sbjct: 353 AIL-----MRKADESGIKLSYDSAFFIAQKIRSNVRELEGALKRVIANSHFTGRAITPDF 407 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ + K + I++IQR+VA++Y I +DLLS RR R+V RPRQVAM L+K + Sbjct: 408 VRESLKDLLAL-QDKLVNIDNIQRIVAEYYKIKISDLLSKRRSRSVARPRQVAMSLAKEL 466 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTT LHA+RK++++ +TD ++++ + L R+++ Sbjct: 467 TNHSLPEIGDAFGGRDHTTALHAIRKIKELQDTDSDIREDYKQLMRILT 515 >gi|283797185|ref|ZP_06346338.1| DNA replication initiator protein, ATPase [Clostridium sp. M62/1] gi|291075143|gb|EFE12507.1| DNA replication initiator protein, ATPase [Clostridium sp. M62/1] gi|295090278|emb|CBK76385.1| chromosomal replication initiator protein DnaA [Clostridium cf. saccharolyticum K10] Length = 456 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 143/452 (31%), Positives = 254/452 (56%), Gaps = 29/452 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + +S+ N + + VP +++ +Y +T E I G+E V + Sbjct: 27 FKTWLLPTEAYSMKGNTLQILVPDIHFLGYMQKKYGFLLTVAIAE----ITGIECQVDFI 82 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 +++ S +L +T++ + I + L+ R+ F TF+ G++N Sbjct: 83 TREQIKEEPEEVSENQLLSHSTDVDQQVIQ----------NANLNPRYTFDTFVVGANNN 132 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A A+ ++AE Y NPLFI+ VGLGKTHL+ +I + ++ P +++Y+T+ Sbjct: 133 LAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSIGHFILQNNPKAKILYVTS 187 Query: 235 EYFMWRFASAIRDNCALN---LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 E F AIR+ ++ ++ RN D+LLIDD+QF+ GK Q EF H N+L ++ Sbjct: 188 EKFTNELIDAIRNKNNISTTEFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNALYEA 247 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R +IL+ + +E Sbjct: 248 KKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK-----EELEGY 302 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKM 409 NI+ EV+ ++A V ++ REL+GA ++V +T E+A+E L L++ G +++ Sbjct: 303 NIDNEVIKYIATHVKSNIRELEGALTKIVALSKLNKREITTELAEEALKDLISPGGAREI 362 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 E I ++V+ H+ I+ D+ S +R + +V PRQ+AMYL + MT IG+ GDRDH Sbjct: 363 TPELIIQVVSDHFGITPADISSKKRNKEIVYPRQIAMYLCRTMTGTPLQGIGKYLGDRDH 422 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TT++H K+ +E + +L+ +E+LK+ +S Sbjct: 423 TTIIHGAEKITADMEKNESLRNTLEVLKKKLS 454 >gi|332980606|ref|YP_004462047.1| chromosomal replication initiator protein DnaA [Mahella australiensis 50-1 BON] gi|332698284|gb|AEE95225.1| chromosomal replication initiator protein DnaA [Mahella australiensis 50-1 BON] Length = 460 Score = 247 bits (630), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 139/446 (31%), Positives = 251/446 (56%), Gaps = 17/446 (3%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 SW + +K + + + L+V FLK +++RY I ++ I VEI+V Sbjct: 27 SWLKNVKPIGIYEHTLVLAVSNKFLKTIVESRYSNYIYDALKDIAPEISDVEIMV--AVD 84 Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 +E+ + + +P + N +P IS L+ ++ F TF+ G+SNR A Sbjct: 85 DDIEEYKAQMTPNDNTPAD-NKQDTPKDEALSAISQ--NDTLNPKYTFDTFVIGNSNRFA 141 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A+ ++AE Y NPLFI+ VGLGKTHL+ AI + ++ P +R++Y+T+E Sbjct: 142 HAASLAVAEAPGKAY-----NPLFIYGGVGLGKTHLMHAIGHRILENNPGIRLMYVTSEK 196 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F ++I+D+ ++ RNID+LLIDD+QF+ K Q EF H N+L ++ Q++ Sbjct: 197 FTNELINSIKDDRNEVFRNKYRNIDVLLIDDIQFIANKERTQEEFFHTFNTLYETNHQII 256 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 ++DRPP ++ +L+ R+RSR + G+ + D E R +IL+ + + + + ++ Sbjct: 257 ISSDRPPKDIPTLEDRLRSRFEWGLLADIQPPDLETRIAILRKKADMEN-----IKVADD 311 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDI 414 +L+ +A+ + ++ REL+GA +++ S + ++A ++L ++ + +K+ ++ I Sbjct: 312 ILLFIAQQIQSNIRELEGALVKIMAYASLNERNIDIDVAGDVLKDIIKDDQPQKITVDRI 371 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 Q++V+ ++N+ +D + +R R + PRQ+AMYL + MT S P+IG FG RDHTTV+H Sbjct: 372 QKIVSNYFNMKPDDFKAKKRSRAISYPRQIAMYLCREMTDLSLPKIGEEFGGRDHTTVIH 431 Query: 475 AVRKVEKMLETDITLKKEVELLKRLI 500 A K+ +E + +K + LK+ I Sbjct: 432 ACEKIMGDMEKEPEIKLTINELKKRI 457 >gi|328949541|ref|YP_004366876.1| Chromosomal replication initiator protein dnaA [Marinithermus hydrothermalis DSM 14884] gi|328449865|gb|AEB10766.1| Chromosomal replication initiator protein dnaA [Marinithermus hydrothermalis DSM 14884] Length = 448 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 156/459 (33%), Positives = 257/459 (55%), Gaps = 36/459 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ESI+ V S ++N + Y +WF+R++ + ++ L VPT+F WIK Y + I + Sbjct: 13 ESIWQNVLSYIRNNITEVEYHTWFERIRPLGIQGGVLELGVPTSFAGEWIKKHYADLIQE 72 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT-KLSPINTNISKSPIILGKQTISPVF 154 + A+SP K+ P T + + + Q+ + Sbjct: 73 AL---------------------LHLGATSPRFELKVVP-GTPVQEDIFSVSTQSQAREN 110 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ ++ F F+ G++N +A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 111 RHKLNPKYTFENFVVGANNNMAHAAALAVAESPGRAY-----NPLFIYGGVGLGKTHLMH 165 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ + +R P+L++ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ GK Sbjct: 166 AVGHYVAQRFPHLKIEYVSTETFTNELINAIREDKMSEFRERYRSVDLLLVDDIQFIAGK 225 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + + E R Sbjct: 226 ERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLESRLRSRFEWGLITDIQPPELETRI 285 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +ILK E ++I EEVL ++AR +T++ REL+GA +L+ S + +T ++ Sbjct: 286 AILK-----MNAEYRGISIPEEVLEYIARQITSNIRELEGALMRLIAYASLNGVEITKQV 340 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A LS V T + + + EDI R+VA HY + +L R + VV PRQVAMYL + + Sbjct: 341 AARALSD-VFTPKEAEYKAEDILRVVAAHYGVRPEELRGRGRSKEVVLPRQVAMYLIREL 399 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 T S PEIG+ F RDHTTVL+A++KV+++ E D +++ Sbjct: 400 TGASLPEIGQFFQGRDHTTVLYAIQKVQELREQDPAMRQ 438 >gi|169830220|ref|YP_001716202.1| chromosomal replication initiation protein [Candidatus Desulforudis audaxviator MP104C] gi|169637064|gb|ACA58570.1| chromosomal replication initiator protein DnaA [Candidatus Desulforudis audaxviator MP104C] Length = 445 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 155/469 (33%), Positives = 263/469 (56%), Gaps = 40/469 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 SI+ + L+ V Y W + L+ + + + + VP +F + W+ RY + Sbjct: 8 SIWQQLMQGLEKSVNRQSYDYWLKPLRPAAYHNKTLLIEVPNHFSRDWLHERYAPLLKHS 67 Query: 97 FQEEHSRIQGVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F+ + G E+ ++ + +P V+K S P L ++T++S Sbjct: 68 FET----LAGHEVAIKFLLAREVPEVKKYLSRP----LDKLSTDLSA------------- 106 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F +F+ G+SNR A AA ++A+ Y NPLF++ VGLGKTHL+ Sbjct: 107 ----LNPKYTFDSFVVGNSNRFAHAAAFAVADTPVKAY-----NPLFLYGGVGLGKTHLM 157 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + R+ Y+T+E F +AI+D+ + R+ID+LLIDD+QFL G Sbjct: 158 HAIGHHILGNHSRYRIAYVTSERFTNDLINAIKDDQTPQFRSKYRSIDILLIDDIQFLAG 217 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H NSL + AKQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 218 KERTQEEFFHTFNSLYEDAKQIVISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETR 277 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ +L Q E+ L + +E ++++A + ++ REL+GAF ++ S I++ E Sbjct: 278 IAILRKKL---QSEENSL-VPDETILYIADRIQSNIRELEGAFIRVSAYASLNRTIVSPE 333 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E+L +++ + K++ IQ++VA +Y + DL + +R R V PRQ+AMYL++ Sbjct: 334 NAAEILKNILPPHKPKQITCSLIQQVVAGYYKLRPEDLKAKKRTRNVAYPRQIAMYLTRE 393 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG FG RDHTTVLHA K+ + ++ D ++++ + EL++R+ Sbjct: 394 LTDLSLPKIGDEFGGRDHTTVLHACEKINQEIQADPSVQEIINELIRRI 442 >gi|198282149|ref|YP_002218470.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665582|ref|YP_002427662.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246670|gb|ACH82263.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517795|gb|ACK78381.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 452 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 153/480 (31%), Positives = 262/480 (54%), Gaps = 52/480 (10%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLET 92 N ++++ + +L+ Q + +W + L+ LH N + L P F+ W++ R ++ Sbjct: 12 NGDALWAALCVQLQEQTTAQQFNTWLRPLR--GELHGNELRLFAPNTFVMEWVRERLIDL 69 Query: 93 ITKLFQE---------EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 + + E E S QG+ +P+ T S+PSI Sbjct: 70 LEAVLAELAPGMLLRLELSPEQGL------APVPAGTATPSAPSI--------------- 108 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 I P G+ L+ F F +++EG SN++A+ AA+ +A+ Y NPL+I+ Sbjct: 109 ------IEPRNGNRLNPGFSFQSYVEGKSNQLAVAAARQVAQNPGKSY-----NPLYIYG 157 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+QA+ NA ++R + +V+Y+++E F+ +++ N + K R +D L Sbjct: 158 GVGLGKTHLMQAVGNAILQRNADAKVLYVSSEGFIMDMVRSLQHNTINDFKQRYRKLDAL 217 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF GK Q EF H N+L D +Q++ DR P E++ L+ R++SR G++V Sbjct: 218 LIDDIQFFAGKDRTQEEFFHTFNALFDGGRQIIITCDRYPKEVDRLEERLQSRFGWGLTV 277 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + HD E R +I+ + + E+ +++ EEV +A + + REL+GA ++V Sbjct: 278 AIQPHDLETRMAIV-----LCKAEESGVDLPEEVAFFIAEKIRSHVRELEGALRRVVAHV 332 Query: 383 SFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +F + A E L L++ + + + +++IQ++VA++++I +D+ S RR R + RP Sbjct: 333 NFTHKPYNLDTAREALRDLIDV-QKRMVSLDNIQKVVAEYFHIRGSDMQSKRRSRNIARP 391 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAM L+K +T S PEIG FG RDHTTVLHA R++EK+ + + ++ L R++ Sbjct: 392 RQVAMCLTKELTNHSLPEIGEAFGGRDHTTVLHACRQIEKLRLEETQMDEDYRNLLRILG 451 >gi|330827701|ref|YP_004390653.1| chromosomal replication initiator protein DnaA [Aeromonas veronii B565] gi|328802837|gb|AEB48036.1| Chromosomal replication initiator protein dnaA [Aeromonas veronii B565] Length = 456 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 151/467 (32%), Positives = 259/467 (55%), Gaps = 17/467 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL + + Sbjct: 4 SLWQQCLNRLQDELPSAEFSMWIRPLQ-AELSDNTLTLYAPNRFVLDWVRDKYLIRVNGI 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + G + P A +P + +P+N N+ KS + P S Sbjct: 63 INE-LCGVDGPALRFDIGNRPHPVAVARAP-VQGAAPVN-NLQKSWESKAEAKPEPNHKS 119 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 + + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ Sbjct: 120 NTNVNYTFENFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAV 174 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + + + +V+Y+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 GNAIKESKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 234 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +I Sbjct: 235 SQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAI 294 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + ++ ++++ +EV +A+ + ++ REL+GA N+++ +F + + Sbjct: 295 L-----MRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVR 349 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 350 EALRDLLALQE-KLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTN 408 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 HSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIKEDYSNLIRTLS 455 >gi|78045557|ref|YP_361732.1| chromosomal replication initiation protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123744129|sp|Q3BZT1|DNAA_XANC5 RecName: Full=Chromosomal replication initiator protein DnaA gi|78033987|emb|CAJ21632.1| chromosomal replication initiator protein DnaA [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 442 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 163/481 (33%), Positives = 249/481 (51%), Gaps = 41/481 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + VAL + + + + + +P+ Sbjct: 48 QVRERYLPRIRELLAYFAGNGE--------VALAVGSRPRAPEPAPAAAAVPSAPQAAPM 99 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + F LDS + F+ F+EG SN++ L AA A+ NPL ++ Sbjct: 100 V--------PFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQRPGDRAH----NPLLLYG 147 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID L Sbjct: 148 STGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDAL 207 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV Sbjct: 208 LIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSV 267 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 268 AIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARA 322 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RP Sbjct: 323 NFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARP 381 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +S Sbjct: 382 RQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLS 441 Query: 502 E 502 E Sbjct: 442 E 442 >gi|50083298|ref|YP_044808.1| chromosomal replication initiation protein [Acinetobacter sp. ADP1] gi|61212579|sp|Q6FG21|DNAA_ACIAD RecName: Full=Chromosomal replication initiator protein DnaA gi|49529274|emb|CAG66986.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter sp. ADP1] Length = 465 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 156/474 (32%), Positives = 264/474 (55%), Gaps = 23/474 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L ++ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEETTDSL-RLYAPNPYWTRYIQEHHLELISILV 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS-P 152 ++ RI+ VEILV S L E+ A++ + +P+ K ++ T S Sbjct: 61 EQLSEGRIRQVEILVDSRPGAILSPAEQPATTTAALSSTPVVPQRVKKEVVEPAATQSNK 120 Query: 153 VFGSP---LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S L+ F FS F+EG SN++A T + + ++ + + NPLF++ GLG Sbjct: 121 ILNSKKRLLNPLFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPTGLG 175 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QA+ NA ++ +PN RV+Y+TAE F+ F S+++ K + R++DLLL+DD+ Sbjct: 176 KTHLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDI 235 Query: 269 QFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 236 HLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPP 295 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 D E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 296 DIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAIARFKGS 350 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM Sbjct: 351 QIDLDVVRESLKDVLAI-RARTISVENIQRVVSEYFRIPLKELIGPKRTRIYARPRQLAM 409 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ +T SFPEIG FG RDH+TV+HA KV+ + + D ++ + L RL+ Sbjct: 410 GLARELTGDSFPEIGMAFGGRDHSTVMHACEKVQSLKQEDPIFNEDYKNLLRLL 463 >gi|225028838|ref|ZP_03718030.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353] gi|224953834|gb|EEG35043.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353] Length = 448 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 130/341 (38%), Positives = 211/341 (61%), Gaps = 14/341 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G +N++A + ++AE Y NPLF++ GLGKTHL+ +IA Sbjct: 112 LNPRYTFDTFVVGPTNKMAHAVSVAVAESPGGAY-----NPLFLYGGAGLGKTHLMHSIA 166 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + I +P+LRV+Y+T+E F +++ + +D RNID+LLIDD+QF+ GK Sbjct: 167 HHIINNRPDLRVLYVTSEKFTNELIDSLKHDKNKEFRDKYRNIDVLLIDDIQFIIGKEST 226 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L ++ KQ+V ++D+ P E+ +L+ R+RSR + G++ + DYE + +IL Sbjct: 227 QEEFFHTFNELHEAKKQIVISSDKHPREIATLEERLRSRFEWGITADIQPPDYETKMAIL 286 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 K R + L+IN+EV+ +VA + ++ REL+GA N++ VF + +T E+A+ Sbjct: 287 KKRAELEH-----LDINQEVMQYVATNINSNIRELEGALNKIYVFANLEKKPVTLELAEN 341 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + K++ + I +VA+HYNIS +D++S ++ + + PRQ+ MYLS+ T Sbjct: 342 ALKDTIEC--QKEVTPQLIMDVVAEHYNISVSDIISKKKNKEIANPRQICMYLSRKYTDY 399 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S IG+ G+RDHTTV+H K+ KMLETD LK ++++ Sbjct: 400 SLQNIGKIMGNRDHTTVIHGHDKIGKMLETDENLKSNLDII 440 >gi|307543590|ref|YP_003896069.1| chromosomal replication initiation protein [Halomonas elongata DSM 2581] gi|307215614|emb|CBV40884.1| chromosomal replication initiation protein [Halomonas elongata DSM 2581] Length = 488 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 159/488 (32%), Positives = 260/488 (53%), Gaps = 45/488 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETITKLFQE----- 99 L++++ + +W + L+ N + L P F++ W+ ++Y + I++L +E Sbjct: 13 LQDELSSQQFNTWIRPLQAEEEGESNQLRLLAPNRFVRDWVSDKYAKRISELMRELAPAK 72 Query: 100 ----------------EHSRIQG--VEILVRSVAL--PSVEKTASSPSITKLSPINTNIS 139 R G V RS A+ P A I +L Sbjct: 73 PPKVVLTVGSRRAAPAPQPRELGDPVSAAPRSPAVHTPPRGDVADESEIDQLREEGEAQQ 132 Query: 140 KSPIILGKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + P G++ + S S L+ F F TF+EG SN++A A++ ++E Y Sbjct: 133 RRPT--GERQVQVEGSLKHNSGLNHNFTFETFVEGKSNQLARAASRQVSENPGGAY---- 186 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLF++ VGLGKTHL+ A+ NA R+ N RVVYL +E F+ A++ N + K Sbjct: 187 -NPLFLYGGVGLGKTHLMHAVGNALDARRENARVVYLHSERFVADMVKALQLNAINDFKR 245 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R++D LLIDD+QF GK Q EF H N+LL+ +Q++ +DR P E+ ++ R++S Sbjct: 246 FYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISGVEERLKS 305 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + + E R +IL + + + K+N+ + +A+ + ++ REL+GA Sbjct: 306 RFGWGLTVAIEPPELETRVAIL-----MKKADQAKVNLPHDAAFFIAQKIRSNVRELEGA 360 Query: 375 FNQLVF-RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 +++ H +T + E L L+ + K++ +++IQR VA++Y I +DLLS R Sbjct: 361 LKKVIADSHFMGKTITQDFIRESLKDLLAL-QDKQVGVDNIQRTVAEYYKIKLSDLLSKR 419 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RKV+ + + ++++ Sbjct: 420 RSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVQALQDESADIREDY 479 Query: 494 ELLKRLIS 501 + L RL++ Sbjct: 480 KNLLRLLT 487 >gi|90415378|ref|ZP_01223312.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2207] gi|90332701|gb|EAS47871.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2207] Length = 523 Score = 246 bits (629), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 158/453 (34%), Positives = 254/453 (56%), Gaps = 35/453 (7%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP-------------- 117 V L P F++ W++N++L I +LF + + V ++ +S P Sbjct: 82 VQLVAPNRFIEDWVQNKFLTRIEQLFVQFGAGQCTVAVVSQSEKAPVFKASAAPKGNTAR 141 Query: 118 ----SVEKTASSPSITKLSPINTNISK---SPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 SVE A S + +P T + + +P I+ S L+S F F +F+EG Sbjct: 142 PVLNSVESVAEQQSSSGFAPQETPVIQRIQAPAII-TSAAEHSLKSNLNSAFTFDSFVEG 200 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 SN++AL AAQ +AE Y NPLFI+ VGLGKTHL+ A+ NA R+P+ ++V Sbjct: 201 KSNQLALAAAQQVAENPGGSY-----NPLFIYGGVGLGKTHLMHAVGNALRMRKPDAKIV 255 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 YL +E F+ A++ K R++D LLIDD+QF GK Q EF H N+LL+ Sbjct: 256 YLHSERFVADMVKALQLKAIDEFKQFYRSVDALLIDDIQFFAGKERSQEEFFHTYNALLE 315 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 +Q++ DR P E+ ++ R++SR G++V + + E R +IL I++ E Sbjct: 316 RGQQMILTCDRYPKEINGVEERLKSRFGWGLTVAVEPPELETRVAIL-----INKAEQAG 370 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKK 408 + ++ + +A+ + ++ REL+GA +++ F+ ++ ++ E L L+ + K Sbjct: 371 IELSRDAAFFIAQRIRSNVRELEGALKRVMAHAQFSGRVIDIDLIRESLKDLLAL-QDKL 429 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I++IQR+VA +Y + +DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RD Sbjct: 430 VTIDNIQRVVADYYKLKMSDLLSKRRSRSVARPRQIAMALAKDLTNYSLPEIGESFGGRD 489 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHA RKV+++ TD ++++++ L R +S Sbjct: 490 HTTVLHACRKVKELEATDRDVERDLKNLYRTLS 522 >gi|323155378|gb|EFZ41561.1| chromosomal replication initiator protein DnaA [Escherichia coli EPECa14] Length = 444 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 149/442 (33%), Positives = 242/442 (54%), Gaps = 21/442 (4%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRSVA-LPSVEKTASS 125 N + L P F+ W++++YL I L F + E+ + V P T++ Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNV 72 Query: 126 PSITKLSPINTNISKSPIILGKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + +++ + G I P + S ++ + F F+EG SN++A AA+ Sbjct: 73 AAPAQVAQTQPQRAAPSTRSGWDNIPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAAR 132 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 133 QVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDM 187 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 188 VKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDR 247 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV + Sbjct: 248 YPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFI 302 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA Sbjct: 303 AKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVA 361 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ Sbjct: 362 EYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 421 Query: 480 EKMLETDITLKKEVELLKRLIS 501 E++ E +K++ L R +S Sbjct: 422 EQLREESHDIKEDFSNLIRTLS 443 >gi|226735872|sp|A3M0Q4|DNAA_ACIBT RecName: Full=Chromosomal replication initiator protein DnaA gi|193075921|gb|ABO10498.2| DNA replication initiator protein [Acinetobacter baumannii ATCC 17978] Length = 465 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 266/475 (56%), Gaps = 25/475 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-EGILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPIN--TNISKSPIILGKQTIS 151 ++ R++ VEILV S L S E+ A++ + + +PI + + P + +S Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSSEQPATTTAALQTAPIPQPAKVKREPEPVANTAVS 120 Query: 152 PVFGSP--LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L+ +F FS F+EG SN++A T + + ++ + + NPLF++ GLG Sbjct: 121 SKSSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPTGLG 175 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 176 KTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDI 235 Query: 269 QFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 236 HLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPP 295 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFA 385 D E R IL + + E+ +++ + +A+ V + REL+GA N++V R A Sbjct: 296 DIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGA 350 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 PI + + L L T + +E+IQR+V++++ I +L+ +R R RPRQ+A Sbjct: 351 PIDLDVVRESLKDVLAIRART--ISVENIQRVVSEYFRIPLKELIGPKRTRIYARPRQLA 408 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 409 MGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLL 463 >gi|312958103|ref|ZP_07772626.1| hypothetical protein PFWH6_0001 [Pseudomonas fluorescens WH6] gi|311287534|gb|EFQ66092.1| hypothetical protein PFWH6_0001 [Pseudomonas fluorescens WH6] Length = 505 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 222/383 (57%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAA 180 PS P+ S+ + +Q V G S L+ F F F+EG SN++A AA Sbjct: 133 PSRDSFDPMAGASSQQAPVRAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAA 192 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 193 WQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVAD 247 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A++ N K R++D LLIDD+QF K Q EF H +LL+ +QV+ +D Sbjct: 248 MVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHPFTALLEGGQQVILTSD 307 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 308 RYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFF 362 Query: 360 VARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA +++ H +T E+ E L L+ + K + +++IQR V Sbjct: 363 IAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTV 421 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK Sbjct: 422 AEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRK 481 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + ++ E+D ++++ + L R ++ Sbjct: 482 INELKESDADIREDYKNLLRTLT 504 >gi|288550165|ref|ZP_05969496.2| hypothetical protein ENTCAN_08106 [Enterobacter cancerogenus ATCC 35316] gi|288315995|gb|EFC54933.1| DNA replication initiator protein [Enterobacter cancerogenus ATCC 35316] Length = 442 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 151/443 (34%), Positives = 244/443 (55%), Gaps = 25/443 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT 129 N + L P F+ W++++YL I L + V L V V +T ++ Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLNDFCG--SDVPQLRFEVGTKPVTQTVRE-TVN 69 Query: 130 KLSPINTNISKSPIIL-----GKQTI-SPV---FGSPLDSRFVFSTFIEGSSNRVALTAA 180 +P + +P +L G + +P + S ++ + F F+EG SN++A AA Sbjct: 70 VAAPAQVTPAPAPRVLPSTRSGWDNVPAPAEQTYRSNVNVKHTFDNFVEGKSNQLARAAA 129 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 + +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 130 RQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIVARKPNAKVVYMHSERFVQD 184 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +D Sbjct: 185 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSD 244 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV Sbjct: 245 RYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFF 299 Query: 360 VARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ V Sbjct: 300 IAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTV 358 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK Sbjct: 359 AEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 418 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 +E++ E +K++ L R +S Sbjct: 419 IEQLREESHDIKEDFSNLIRTLS 441 >gi|117617947|ref|YP_854527.1| chromosomal replication initiation protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166201857|sp|A0KEC3|DNAA_AERHH RecName: Full=Chromosomal replication initiator protein DnaA gi|117559354|gb|ABK36302.1| chromosomal replication initiator protein DnaA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 456 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 258/467 (55%), Gaps = 17/467 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL + + Sbjct: 4 SLWQQCLNRLQDELPSAEFSMWIRPLQ-AELSDNTLTLYAPNRFVLDWVRDKYLIRVNGI 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + G + P A +P+ P+N N KS + P S Sbjct: 63 INE-LCGVDGPTLRFDIGNRPHPVAVARAPA-RGADPVN-NSQKSWESKAEAKPEPNHKS 119 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 + + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ Sbjct: 120 NTNVNYTFENFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAV 174 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA +R+ + +V+Y+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 GNAIKERKQDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 234 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +I Sbjct: 235 SQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAI 294 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + ++ ++++ +EV +A+ + ++ REL+GA N+++ +F + + Sbjct: 295 L-----MRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVR 349 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 350 EALRDLLALQE-KLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTN 408 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 HSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIKEDYSNLIRTLS 455 >gi|325567641|ref|ZP_08144308.1| DNA-directed DNA replication initiator protein [Enterococcus casseliflavus ATCC 12755] gi|325159074|gb|EGC71220.1| DNA-directed DNA replication initiator protein [Enterococcus casseliflavus ATCC 12755] Length = 445 Score = 246 bits (628), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 155/473 (32%), Positives = 260/473 (54%), Gaps = 38/473 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLET 92 + +SI+ + K ++ P Y++W + S N + + VP++ K+ W KN + Sbjct: 3 SADSIWQDLQRSFKEELNPASYSAWIETANVLSFEKNQLLIEVPSDLHKSYWEKNLAAKI 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + F + G E++ V + E ++PS + + K+ P Sbjct: 63 VEMGFMK-----TGEELIPSFVTVEEAEALKTAPSTIQTA-------------AKENERP 104 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL Sbjct: 105 P-KSILNEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + ++PN ++ Y+++E F F ++I+ N + ++ RN+DLLL+DD+QFL Sbjct: 159 MHAIGHQMLLKRPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLV 218 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E Sbjct: 219 NKEGTQEEFFNTFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLET 278 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+ + E +L I ++ L ++A + ++ REL+GA LV +FA + Sbjct: 279 RTAILRKK-----AEAERLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFATMQNSD 330 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A E + L ++ + ++ I IQ VAK+Y+I NDL +RV+ +V PRQ+AMY Sbjct: 331 ITTSLAAEAIKALKSSHGSTQVSILQIQEEVAKYYHIHVNDLKGKKRVKGIVVPRQIAMY 390 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 LS+ +T S P+IG FG +DHTTV+HA K++ ++ETD T+K E+ +K+++ Sbjct: 391 LSRELTDSSLPKIGGEFGGKDHTTVIHAHEKIQHLVETDPTIKNEIAEIKQIL 443 >gi|302870732|ref|YP_003839368.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor obsidiansis OB47] gi|302573591|gb|ADL41382.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor obsidiansis OB47] Length = 454 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 139/348 (39%), Positives = 212/348 (60%), Gaps = 13/348 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G++NR+A AA ++AE T NPLFI+ VGLGKTHL+ AI Sbjct: 112 LNPKYTFETFVVGNNNRLAHAAALAVAETPPGERT---YNPLFIYGGVGLGKTHLMHAIG 168 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + +K P +V+Y+T+E F +AIRD + RN+D+LLIDD+QFL GK Sbjct: 169 HHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLLIDDIQFLGGKERT 228 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +IL Sbjct: 229 QEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITDIQPPDFETRIAIL 288 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPI--LTAEIA 393 + + P + +L +A + T+ REL+GA N+ L + AP +T E+A Sbjct: 289 SKKCQLEGTPVP-----QHILEFIASKIETNIRELEGALNKILAYSKLMAPDKEITLELA 343 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++ L ++T K++ IEDIQ VA ++NI D S+RR R V PRQ+AMYL++ +T Sbjct: 344 EKALKEFIDTNTKKELTIEDIQAEVASYFNIRLEDFKSSRRSRNVAFPRQIAMYLARELT 403 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRLI 500 S P+IG FG +DHTTVLHA K+++++ D + VE + KRLI Sbjct: 404 NVSLPKIGEAFGGKDHTTVLHACEKIKELINKDTNTRNAVENIKKRLI 451 >gi|21326649|gb|AAL30089.1| chromosomal replication initiator protein DnaA [Xanthomonas campestris pv. campestris] Length = 442 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 164/482 (34%), Positives = 252/482 (52%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVE 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + G + +V S P + P + ++ +P Sbjct: 48 QVRERYLPRIRELL----AYFAGNGEVALAVG--------SRPRAPEPLPASQAVASAPA 95 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 + LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 96 AAPIVPFA----GNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|283787598|ref|YP_003367463.1| chromosomal replication initiator protein [Citrobacter rodentium ICC168] gi|282951052|emb|CBG90730.1| chromosomal replication initiator protein [Citrobacter rodentium ICC168] Length = 468 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 154/476 (32%), Positives = 259/476 (54%), Gaps = 23/476 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK-- 147 R + G + + +++ P A+ +T+ P + S Sbjct: 63 LNNFCGADAPQLRFEVGTKPVTQTLKTPVNNNFAAPAQVTQAQPQRPEPTASRPGWDNVP 122 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 123 APAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 177 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 178 GKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 237 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 297 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 352 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 353 RAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMA 411 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 467 >gi|332996040|gb|EGK15667.1| chromosomal replication initiator protein DnaA [Shigella flexneri VA-6] Length = 444 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 148/442 (33%), Positives = 240/442 (54%), Gaps = 21/442 (4%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLF------QEEHSRIQ-GVEILVRSVALPSVEKT 122 N + L P F+ W++++YL I L R + G + + ++ Sbjct: 13 NTLSLYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNV 72 Query: 123 ASSPSITKLSPINTNIS-KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 A+ + + P S +S P + S ++ + F F+EG SN++A AA+ Sbjct: 73 AAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAAR 132 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 133 QVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDM 187 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 188 VKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDR 247 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV + Sbjct: 248 YPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFI 302 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA Sbjct: 303 AKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVA 361 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ Sbjct: 362 EYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 421 Query: 480 EKMLETDITLKKEVELLKRLIS 501 E++ E +K++ L R +S Sbjct: 422 EQLREESHDIKEDFSNLIRTLS 443 >gi|148982286|ref|ZP_01816693.1| chromosomal replication initiation protein [Vibrionales bacterium SWAT-3] gi|145960551|gb|EDK25908.1| chromosomal replication initiation protein [Vibrionales bacterium SWAT-3] Length = 465 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 152/450 (33%), Positives = 246/450 (54%), Gaps = 47/450 (10%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEE--------HSRIQGVEIL----------- 110 N + L P F+ W++++YL +I +L QE H + + Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDIPHLHFEVGSKRVSAPKPAAPASAP 95 Query: 111 --VRSVALPSVEKTASSPSITKLSPINTNISKSPI---ILGKQTISPVFGSPLDSRFVFS 165 R+ A + E +A + + NT + P+ I + ++P + F+ Sbjct: 96 APTRTAADVAAESSAPAQLQARKPVHNTWRDEEPVDVDINHRSNVNP--------KHKFN 147 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+EG SN++ L AA+ +A+ Y NPLF++ GLGKTHLL A+ NA + +P Sbjct: 148 NFVEGKSNQLGLAAARQVADNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDGKP 202 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 N +VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H Sbjct: 203 NAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTF 262 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + Sbjct: 263 NALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKK 317 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVN 402 ED ++++ +EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ Sbjct: 318 AEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLA 376 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG Sbjct: 377 LQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGD 435 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 FG RDHTTVLHA RK+ ++ E +K++ Sbjct: 436 AFGGRDHTTVLHACRKIAQLREESHDIKED 465 >gi|169794207|ref|YP_001712000.1| chromosomal replication initiation protein [Acinetobacter baumannii AYE] gi|184156325|ref|YP_001844664.1| chromosomal replication initiation protein [Acinetobacter baumannii ACICU] gi|213155390|ref|YP_002317435.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB0057] gi|215481762|ref|YP_002323944.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB307-0294] gi|239503909|ref|ZP_04663219.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB900] gi|260558093|ref|ZP_05830304.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii ATCC 19606] gi|301345945|ref|ZP_07226686.1| chromosomal replication initiation protein [Acinetobacter baumannii AB056] gi|301512869|ref|ZP_07238106.1| chromosomal replication initiation protein [Acinetobacter baumannii AB058] gi|301594680|ref|ZP_07239688.1| chromosomal replication initiation protein [Acinetobacter baumannii AB059] gi|332854713|ref|ZP_08435500.1| replication initiator protein DnaA [Acinetobacter baumannii 6013150] gi|332865593|ref|ZP_08436433.1| replication initiator protein DnaA [Acinetobacter baumannii 6013113] gi|332873307|ref|ZP_08441262.1| replication initiator protein DnaA [Acinetobacter baumannii 6014059] gi|226735529|sp|B7GUX5|DNAA_ACIB3 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735530|sp|B7IBH7|DNAA_ACIB5 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735531|sp|B2HZA7|DNAA_ACIBC RecName: Full=Chromosomal replication initiator protein DnaA gi|226735771|sp|B0VAF3|DNAA_ACIBY RecName: Full=Chromosomal replication initiator protein DnaA gi|169147134|emb|CAM84993.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter baumannii AYE] gi|183207919|gb|ACC55317.1| ATPase [Acinetobacter baumannii ACICU] gi|213054550|gb|ACJ39452.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB0057] gi|213987186|gb|ACJ57485.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB307-0294] gi|260408447|gb|EEX01754.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii ATCC 19606] gi|322506194|gb|ADX01648.1| dnaA, Chromosomal replication initiator protein [Acinetobacter baumannii 1656-2] gi|323516070|gb|ADX90451.1| chromosomal replication initiation protein [Acinetobacter baumannii TCDC-AB0715] gi|332727870|gb|EGJ59272.1| replication initiator protein DnaA [Acinetobacter baumannii 6013150] gi|332735245|gb|EGJ66322.1| replication initiator protein DnaA [Acinetobacter baumannii 6013113] gi|332738513|gb|EGJ69385.1| replication initiator protein DnaA [Acinetobacter baumannii 6014059] Length = 465 Score = 246 bits (628), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 161/475 (33%), Positives = 266/475 (56%), Gaps = 25/475 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-EGILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPIN--TNISKSPIILGKQTIS 151 ++ R++ VEILV S L S E+ A++ + + +PI + + P + +S Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSSEQPATTTAALQTAPIPQPAKVKREPEPVANTAVS 120 Query: 152 PVFGSP--LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L+ +F FS F+EG SN++A T + + ++ + + NPLF++ GLG Sbjct: 121 SKSSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPTGLG 175 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 176 KTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDI 235 Query: 269 QFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 236 HLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPP 295 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFA 385 D E R IL + + E+ +++ + +A+ V + REL+GA N++V R A Sbjct: 296 DIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGA 350 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 PI + + L L T + +E+IQR+V++++ I +L+ +R R RPRQ+A Sbjct: 351 PIDLDVVRESLKDVLAIRART--ISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLA 408 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 409 MGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLL 463 >gi|91774357|ref|YP_544113.1| chromosomal replication initiator protein DnaA [Methylobacillus flagellatus KT] gi|123380248|sp|Q1GXK1|DNAA_METFK RecName: Full=Chromosomal replication initiator protein DnaA gi|91708344|gb|ABE48272.1| chromosomal replication initiator protein DnaA [Methylobacillus flagellatus KT] Length = 470 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 152/488 (31%), Positives = 259/488 (53%), Gaps = 40/488 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ +++ R + ++ + +W + L+F + + L P F++ W+K+R+L+ I+ Sbjct: 2 ENFWSLCLGRFEEELSAQQFNTWIKPLRFEA-REGTLRLLAPNRFVQQWVKDRFLQKISA 60 Query: 96 LFQEEHSRIQGVEILVRSVALPS-----VEKTASSPSITKLSPINTNISKSPIILGKQTI 150 L +E S +E+ + + S K A +P + I ISK +T+ Sbjct: 61 LAEEVLSTPVQIELALYDASEKSPITLAKPKPAEAPGAA--AKIEAEISKV-----TKTV 113 Query: 151 SPVF--------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 SP S L+ F F F+ G +N++A AA +AE Y Sbjct: 114 SPAKPASAAPKKPKTLTETSGLNPAFRFDNFVTGKANQLARAAAIQVAENPGTAY----- 168 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI+ VGLGKTH+LQAI N ++P+ ++ YL AE ++ A K Sbjct: 169 NPLFIYGGVGLGKTHVLQAIGNHLKSQRPDAKIRYLHAERYVSDVVKAYEHKAFDEFKRQ 228 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 ++DLLLIDD+QF K Q EF + NSL+++ KQ++ D P E+ +D R+R+R Sbjct: 229 YHSLDLLLIDDIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPKEIADVDERLRTR 288 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 G++V + + EMR +IL + + E ++ ++E+V +A+ V +S REL+GA Sbjct: 289 FSWGLTVAVEPPELEMRVAIL-----LKKAEAARVTLDEDVAFFIAKQVRSSVRELEGAL 343 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 N+++ +F + +A E L L+ +++ IE+IQ+ VA +Y I ++ S +R Sbjct: 344 NRIIAMANFTGHAIDVSLAKEALKDLIAV-RGRQITIENIQKTVADYYKIKVAEMYSKKR 402 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R RPRQ+AM L++ +T SFPEIG FG R HTTV+HA ++E++ + D + +++ Sbjct: 403 SRNFARPRQIAMTLARELTNHSFPEIGEAFGGRHHTTVMHACDEIEQLRQNDQNVARDIA 462 Query: 495 LLKRLISE 502 +L ++I + Sbjct: 463 VLIQVIRD 470 >gi|92112137|ref|YP_572065.1| chromosomal replication initiation protein [Chromohalobacter salexigens DSM 3043] gi|123084264|sp|Q1R1P2|DNAA_CHRSD RecName: Full=Chromosomal replication initiator protein DnaA gi|91795227|gb|ABE57366.1| chromosomal replication initiator protein DnaA [Chromohalobacter salexigens DSM 3043] Length = 495 Score = 246 bits (627), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 157/495 (31%), Positives = 268/495 (54%), Gaps = 52/495 (10%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS-RI 104 L++++ + +W + L+ N + L P F++ W+ ++YL+ I +L ++ S + Sbjct: 13 LQDELSSQQFNTWIRPLQAEDGDANELCLLAPNRFVRDWVNDKYLKRINELLRDLASGKP 72 Query: 105 QGVEILV---RSVALPSVEKTASSPSITKLSPINTNISKSPII----------------- 144 V++ V R+VA+ S + S T ++ + +++P + Sbjct: 73 PKVQLTVGSRRNVAMSSPRDLGAPVSATTMNA--SRPTEAPAVHAAPRAKGDYADEQEID 130 Query: 145 -LGKQTISPVFG---------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 L ++ +P G S L+ F F TF+EG SN++A A++ +AE Sbjct: 131 RLREREETPRRGGGERQVQVEGSLKHQSGLNPNFTFETFVEGKSNQLARAASRQVAENPG 190 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 Y NPLF++ VGLGKTHL+ A+ N ++ N +VVYL +E F+ A++ N Sbjct: 191 GAY-----NPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADMVKALQLN 245 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + K R++D LLIDD+QF GK Q EF H N+LL+ +Q++ +DR P E+ Sbjct: 246 AINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISG 305 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 ++ R++SR G++V + + E R +IL + + + K+++ + +A+ + ++ Sbjct: 306 VEERLKSRFGWGLTVAIEPPELETRVAIL-----MKKADQAKVDLPHDAAFFIAQKIRSN 360 Query: 368 GRELDGAFNQLVF-RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA +++ H +T + E L L+ + K++ +++IQR VA++Y I Sbjct: 361 VRELEGALKKVIADSHFMGKPITQDFIRESLKDLLAL-QDKQVGVDNIQRTVAEYYKIKL 419 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 DLLS RR R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RKV+ + E Sbjct: 420 ADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVQTLKEES 479 Query: 487 ITLKKEVELLKRLIS 501 ++++ + L RL++ Sbjct: 480 ADIREDYKNLLRLLT 494 >gi|253987484|ref|YP_003038840.1| chromosomal replication initiation protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253778934|emb|CAQ82094.1| chromosomal replication initiator protein dnaA [Photorhabdus asymbiotica] Length = 439 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 151/442 (34%), Positives = 246/442 (55%), Gaps = 26/442 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI-LVR-SVALPSVEKTASSP- 126 N + L P F+ W++ +Y+ I L + G E+ L+R V + + S P Sbjct: 13 NTLALYAPNRFVLDWVREKYINNINGLLND----FCGAEVPLLRFEVGNKPISQNDSPPQ 68 Query: 127 ---SITKLSPINTNISKSPIILGKQTISP--VFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + ++P N S P + P + S ++ + F F+EG SN++A AA+ Sbjct: 69 RVVAHAPVTPAPQNTSVRPS-WDNTAVQPELSYRSNVNPKHTFDNFVEGKSNQLARAAAR 127 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +A+ Y NPLF++ GLGKTHLL A+ N+ + R+ N +VVY+ +E F+ Sbjct: 128 QVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNSIMARKANAKVVYMHSERFVQDM 182 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 A+++N + K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 183 VKALQNNAIEDFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDR 242 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P E+ ++ R++SR G++V + + E R +IL + + ++ ++ + EV + Sbjct: 243 YPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENEIQLPGEVAFFI 297 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA Sbjct: 298 AKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVA 356 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ Sbjct: 357 EYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 416 Query: 480 EKMLETDITLKKEVELLKRLIS 501 E++ E +K++ L R +S Sbjct: 417 EQLREESHDIKEDFSNLIRTLS 438 >gi|291086463|ref|ZP_06355876.2| hypothetical protein CIT292_10556 [Citrobacter youngae ATCC 29220] gi|291068324|gb|EFE06433.1| DNA replication initiator protein [Citrobacter youngae ATCC 29220] Length = 471 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 155/478 (32%), Positives = 261/478 (54%), Gaps = 28/478 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 R + G + + +++ P A + ++ P T + P G Sbjct: 67 LNNFCGADAPQLRFEVGTKPVTQTLKTPVNNVVAPAHVAQQVQPQRTAPAARP---GWDN 123 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 124 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 178 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 179 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 238 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 239 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 298 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 299 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 353 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 354 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 412 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 413 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|320180043|gb|EFW54985.1| Chromosomal replication initiator protein DnaA [Shigella boydii ATCC 9905] gi|320185533|gb|EFW60299.1| Chromosomal replication initiator protein DnaA [Shigella flexneri CDC 796-83] Length = 439 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 148/442 (33%), Positives = 242/442 (54%), Gaps = 21/442 (4%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRSVA-LPSVEKTASS 125 N + L P F+ W++++YL I L F + E+ + V P T++ Sbjct: 8 NTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNV 67 Query: 126 PSITKLSPINTNISKSPIILGKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + +++ + G + P + S ++ + F F+EG SN++A AA+ Sbjct: 68 AAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAAR 127 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 128 QVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDM 182 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 183 VKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDR 242 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV + Sbjct: 243 YPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFI 297 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA Sbjct: 298 AKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVA 356 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ Sbjct: 357 EYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 416 Query: 480 EKMLETDITLKKEVELLKRLIS 501 E++ E +K++ L R +S Sbjct: 417 EQLREESHDIKEDFSNLIRTLS 438 >gi|110644045|ref|YP_671775.1| chromosomal replication initiator protein DnaA [Escherichia coli 536] gi|312972006|ref|ZP_07786180.1| chromosomal replication initiator protein DnaA [Escherichia coli 1827-70] gi|110345637|gb|ABG71874.1| chromosomal replication initiator protein DnaA [Escherichia coli 536] gi|310334383|gb|EFQ00588.1| chromosomal replication initiator protein DnaA [Escherichia coli 1827-70] gi|315138286|dbj|BAJ45445.1| chromosomal replication initiator protein DnaA [Escherichia coli DH1] gi|315618592|gb|EFU99178.1| chromosomal replication initiator protein DnaA [Escherichia coli 3431] gi|323161046|gb|EFZ46965.1| chromosomal replication initiator protein DnaA [Escherichia coli E128010] gi|323173320|gb|EFZ58949.1| chromosomal replication initiator protein DnaA [Escherichia coli LT-68] gi|323182497|gb|EFZ67901.1| chromosomal replication initiator protein DnaA [Escherichia coli 1357] gi|323189563|gb|EFZ74843.1| chromosomal replication initiator protein DnaA [Escherichia coli RN587/1] Length = 444 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 148/442 (33%), Positives = 242/442 (54%), Gaps = 21/442 (4%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRSVA-LPSVEKTASS 125 N + L P F+ W++++YL I L F + E+ + V P T++ Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNV 72 Query: 126 PSITKLSPINTNISKSPIILGKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + +++ + G + P + S ++ + F F+EG SN++A AA+ Sbjct: 73 AAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAAR 132 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 133 QVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDM 187 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 188 VKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDR 247 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV + Sbjct: 248 YPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFI 302 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA Sbjct: 303 AKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVA 361 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ Sbjct: 362 EYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 421 Query: 480 EKMLETDITLKKEVELLKRLIS 501 E++ E +K++ L R +S Sbjct: 422 EQLREESHDIKEDFSNLIRTLS 443 >gi|90960991|ref|YP_534907.1| chromosomal replication initiation protein [Lactobacillus salivarius UCC118] gi|227891669|ref|ZP_04009474.1| DNA-directed DNA replication initiator protein [Lactobacillus salivarius ATCC 11741] gi|301300472|ref|ZP_07206671.1| chromosomal replication initiator protein DnaA [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820185|gb|ABD98824.1| Chromosomal replication initiation protein [Lactobacillus salivarius UCC118] gi|227866472|gb|EEJ73893.1| DNA-directed DNA replication initiator protein [Lactobacillus salivarius ATCC 11741] gi|300851919|gb|EFK79604.1| chromosomal replication initiator protein DnaA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 454 Score = 246 bits (627), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 163/474 (34%), Positives = 264/474 (55%), Gaps = 31/474 (6%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 L ++ +S++ + + P Y +WF + + + ++VPT + + + Sbjct: 1 MLNLDLDSLWQYIIESFSKSLNPASYKAWFGPAEPVQYIDQTLIVNVPTPLHRDYWTQKL 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT---KLSPINTNISKSPIILG 146 I+ L QE + G +I V + A+S S+T K+S N S S + Sbjct: 61 NGQISDLIQE----VSGEKITVLAKLPSDPNPLANSESVTTPKKVSVAENNNSSSFL--- 113 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K+T L+ R+ F TF+ G N++A AA ++AE V NPLF + VG Sbjct: 114 KET-------QLNDRYTFDTFVVGKGNQLAHAAALAVAEEPG-----VFYNPLFFYGGVG 161 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI + ++ +P+ +V Y+T+E F F S+I+ + R++DLLL+D Sbjct: 162 LGKTHLMHAIGHQMLENRPDAKVKYVTSESFANDFISSIQTKRQEEFRREYRSVDLLLVD 221 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K+ Q EF H N+L D KQ+V ++DR P+E+ L R+ SR + G+SV + Sbjct: 222 DIQFFADKVGTQEEFFHTFNALYDDKKQIVLSSDRLPNEIPKLQQRLVSRFKWGLSVDIT 281 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL+N+ E ++I ++ L ++A + ++ REL+GA ++ S Sbjct: 282 PPDFETRIAILRNK-----AEAEHVSIPDDTLSYIAGQIDSNIRELEGALMRVEAFSSMT 336 Query: 386 --PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 PI T+ +A E L +L +G++ K+ I IQ VAK+Y+++ DL +RV+++V PRQ Sbjct: 337 RTPISTS-LAAEALKNLKVSGKSSKLTIPIIQDKVAKYYHVTIADLKGKKRVKSIVIPRQ 395 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +AMYLS+ +T S P+IG FG +DHTTV+HA K+ + L TD TL+KEV L+ Sbjct: 396 IAMYLSRELTDASLPKIGNEFGGKDHTTVIHAHEKIAEALHTDTTLQKEVNELR 449 >gi|323141437|ref|ZP_08076327.1| chromosomal replication initiator protein DnaA [Phascolarctobacterium sp. YIT 12067] gi|322414093|gb|EFY04922.1| chromosomal replication initiator protein DnaA [Phascolarctobacterium sp. YIT 12067] Length = 459 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 143/459 (31%), Positives = 253/459 (55%), Gaps = 18/459 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ +LK V+ W + + V ++V +F K ++ Y + I + Sbjct: 9 IWVRCKDKLKESFNEKVFNVWIKPIMPLEVTDTYYKVAVKNDFFKTMLEENYAQVIEGVL 68 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 S+ +++++ ++ ++ S + ++ + + + ++ S Sbjct: 69 AGIMSK--NIKLIIETMD----NGSSGSEAAEEMPAVPAKREQQQLFNENTSVQQPDESN 122 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++VF TF+ G+SNR A AAQ++A +H Y NPLF++ VGLGKTHL+ AI Sbjct: 123 LNPKYVFETFVIGNSNRFAHAAAQAVANDPAHAY-----NPLFLYGGVGLGKTHLMHAIG 177 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P+++V+Y ++E F ++I++ + RNID L+IDD+QFL+GK Sbjct: 178 NRIKQNNPSMKVLYTSSEKFTNEIINSIQNKTTEAFRQKYRNIDCLIIDDIQFLKGKEQT 237 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L D+ KQ++ ++DRPP E+E+L+ R+RSR G++ + D E R +IL Sbjct: 238 QVEFFHTFNALKDADKQIIISSDRPPREIETLEDRLRSRFDQGLTADIQTPDLETRMAIL 297 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 + + A P EV+ +A + T+ RE++GA+N++V S + +T E A + Sbjct: 298 RTKAASDNIVLPT-----EVITLLATNIATNIREIEGAYNKIVAYTSLMHMPITVETAQK 352 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +LS + N +T+ + E I ++VA HYN+ +++L + +R + + PRQVAMYL + + Sbjct: 353 VLSDMGNDIKTRTITYEGIIKVVADHYNVKQDELFNKKRTQNIAFPRQVAMYLCRELADL 412 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S+P IG FG RDHTTV+HA K+ +++ + E++ Sbjct: 413 SYPRIGELFGGRDHTTVIHAYEKISNFKNSNLAFQNELQ 451 >gi|160878163|ref|YP_001557131.1| chromosomal replication initiator protein DnaA [Clostridium phytofermentans ISDg] gi|226735795|sp|A9KPP1|DNAA_CLOPH RecName: Full=Chromosomal replication initiator protein DnaA gi|160426829|gb|ABX40392.1| chromosomal replication initiator protein DnaA [Clostridium phytofermentans ISDg] Length = 453 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 147/458 (32%), Positives = 257/458 (56%), Gaps = 45/458 (9%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKA----WIKNRYLETITKLFQEEHSRIQGVEIL 110 Y +W LK + V N++ LSV + A +IKN+Y + + E ++ +E + Sbjct: 27 YKTWLLPLKVYDVKDNVIKLSVDDTKIGANSLDFIKNKYSQFLKTAIAEVINQDFEIEFV 86 Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 + S + +P+ K + S L+ R+ F TF+ G Sbjct: 87 LLSQTKAEEKVQTQAPNKIKNESL---------------------SYLNPRYTFDTFVVG 125 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 ++N +A A+ ++AE + Y NPLFI+ VGLGKTHL+ +IA+ +++ PN +V+ Sbjct: 126 ANNNLAHAASLAVAESPAEIY-----NPLFIYGGVGLGKTHLMHSIAHYILEQNPNSKVL 180 Query: 231 YLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 Y+T+E F +IR D ++ RNID+LLIDD+QF+ GK Q EF H N+L Sbjct: 181 YVTSEKFTNELIESIRNADTTPTEFREKYRNIDVLLIDDIQFIIGKERTQEEFFHTFNTL 240 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 +S KQ++ ++D+PP ++ +L+ R+RSR + G++V + DYE R +ILK + +E Sbjct: 241 HESKKQIIISSDKPPKDILTLEERLRSRFEWGLTVDIQSPDYETRMAILKKK-----EEL 295 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVNT 403 L I++EV+ ++A + ++ REL+GA ++V + + + E+ A+E L L++ Sbjct: 296 DCLTIDDEVMKYIASNIKSNIRELEGALTKIV---ALSRLKKKEVDVILAEEALKDLISP 352 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 K + ++ I +V++H+ S +++ S+ R R + PRQ+AMYL + +T S +IG+ Sbjct: 353 DNKKTVTLDLIIEVVSEHFTTSTSEIYSDNRSRNIAYPRQIAMYLCRKLTSLSLTDIGKM 412 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G+RDH+TVLH KVEK ++ D + + +++L + I+ Sbjct: 413 MGNRDHSTVLHGCNKVEKDIKKDPSFQNTIDVLIKKIN 450 >gi|313674130|ref|YP_004052126.1| chromosomal replication initiator protein dnaa [Marivirga tractuosa DSM 4126] gi|312940828|gb|ADR20018.1| chromosomal replication initiator protein DnaA [Marivirga tractuosa DSM 4126] Length = 471 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 155/479 (32%), Positives = 266/479 (55%), Gaps = 32/479 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 +C+S++ +K VG + +WF ++ + +N++ + VP+ F W++ Y+ + Sbjct: 4 DCQSVWNNCLHSIKEGVGEQSFNTWFSPIEPVKLENNVLTIQVPSQFFYEWLEEHYVHIL 63 Query: 94 TKLFQEE---HSRIQGVEILVR--------SVALPSVEKTASSPSITKLSPINTNISKSP 142 K+ +E R++ I+ + ++ LP+ K+ + P+N P Sbjct: 64 RKVIHQELGPEGRLEYSVIVDKGNDKYKPFTINLPNNNKSNKPKEQQREQPLN------P 117 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 L +S S L+ + F TFIEG NR+A +A ++A+ G T+ NPL I+ Sbjct: 118 FALNGVDLSQQ-NSQLNPNYTFDTFIEGDCNRLARSAGYAVAK--KPGITS--FNPLMIY 172 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLR-VVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 VGLGKTHL+QAI N IK N + V+Y+++E F +F A+R+N + + +ID Sbjct: 173 GGVGLGKTHLVQAIGN-EIKDTLNGKFVLYVSSEKFTNQFIDALRNNKIQDFSNYYLHID 231 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 L+IDD+QFL GK Q F H+ N L + KQ++ +DRPP +L+ L+ R+ SR + G+ Sbjct: 232 ALIIDDVQFLGGKERTQEIFFHIFNHLHQNGKQIIMTSDRPPRDLKGLEDRLLSRFKWGL 291 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + L D E R +I++N++ E ++I E+V+ ++A +V T+ REL+G L+ Sbjct: 292 TADLQQPDLETRIAIIQNKM-----ESDGIHIPEDVIEYLAYSVDTNIRELEGVLISLIA 346 Query: 381 RHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 S + E+A + L ++V+ E++ + I+ IQ+ +A+H+ + +DL + R + +V Sbjct: 347 HASLNRKEIDLELAKQTLKNIVHDIESE-VGIDFIQKTIAEHFAVKIDDLKAKTRKKEIV 405 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RQV+MY K T S IG FG RDH+TV+HAV+ V M++ D ++E+E LK+ Sbjct: 406 IARQVSMYFCKEHTNHSLKSIGYHFGGRDHSTVIHAVQSVNDMMQVDKRFREEMEELKK 464 >gi|156936082|ref|YP_001439998.1| hypothetical protein ESA_03976 [Cronobacter sakazakii ATCC BAA-894] gi|156534336|gb|ABU79162.1| hypothetical protein ESA_03976 [Cronobacter sakazakii ATCC BAA-894] Length = 438 Score = 245 bits (626), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 148/441 (33%), Positives = 241/441 (54%), Gaps = 25/441 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS------RIQ-GVEILVRSVALPSVEKT 122 N + L P F+ W++++YL I L + R + G + L + P+ + Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDAPLLRFEVGTKPLATATTAPASQAV 72 Query: 123 ASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 + + +P+ P P + S ++ + F F+EG SN++A AA+ Sbjct: 73 KPAQAAPAAAPVRPAWDNVP-----APAEPSYRSNVNVKHTFDNFVEGKSNQLARAAARQ 127 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 128 VADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMV 182 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 183 KALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRY 242 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV +A Sbjct: 243 PKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIA 297 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA+ Sbjct: 298 KRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAE 356 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 +Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E Sbjct: 357 YYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIE 416 Query: 481 KMLETDITLKKEVELLKRLIS 501 ++ E +K++ L R +S Sbjct: 417 QLREESHDIKEDFSNLIRTLS 437 >gi|262166785|ref|ZP_06034522.1| chromosomal replication initiator protein dnaA [Vibrio mimicus VM223] gi|262026501|gb|EEY45169.1| chromosomal replication initiator protein dnaA [Vibrio mimicus VM223] Length = 421 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 153/441 (34%), Positives = 245/441 (55%), Gaps = 47/441 (10%) Query: 84 WIKNRYLETITKLFQEEHSRIQG-------VEILVRSVALP---------SVEKTASSPS 127 W++++YL I +L E G E+ R V P V +S+P+ Sbjct: 4 WVRDKYLNNINRLLME----FSGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPA 59 Query: 128 -ITKLSPINT---NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSI 183 + + PI+ + S + I + ++P + F+ F+EG SN++ L AA+ + Sbjct: 60 QLAQRKPIHKTWDDDSAAADITHRSNVNP--------KHKFNNFVEGKSNQLGLAAARQV 111 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 ++ Y NPLF++ GLGKTHLL A+ NA + PN +VVY+ +E F+ Sbjct: 112 SDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVK 166 Query: 244 AIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPP 302 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P Sbjct: 167 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 226 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 E+ ++ R++SR G++V + + E R +IL + + ED ++++ +EV +A+ Sbjct: 227 KEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAK 281 Query: 363 TVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + ++ REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ VA+ Sbjct: 282 RLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAE 339 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 +Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E Sbjct: 340 YYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIE 399 Query: 481 KMLETDITLKKEVELLKRLIS 501 ++ E +K++ L R +S Sbjct: 400 QLREESHDIKEDYSNLIRTLS 420 >gi|197106892|ref|YP_002132269.1| chromosomal replication initiator protein DnaA [Phenylobacterium zucineum HLK1] gi|196480312|gb|ACG79840.1| chromosomal replication initiator protein DnaA [Phenylobacterium zucineum HLK1] Length = 484 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 172/476 (36%), Positives = 247/476 (51%), Gaps = 33/476 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T LK ++G + SW + + V L T + WI+ I +L+ Sbjct: 23 VWTKTCQVLKRELGEATFGSWLGQAALRES-GDEVCLVAATGVARDWIRRHAWRRIGELW 81 Query: 98 QEEHSRIQGVEILVRSVALPS---VEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + L R + L S VE + P N + + + ++PV Sbjct: 82 AQN-------DPLGRRLDLKSRMEVESVGAVAPAPAAPPRAANAEPAAEVFEVEAVAPVA 134 Query: 155 G-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLG 208 L RF F TF+ G +N A A+ +A D H NP+ H G G Sbjct: 135 ARQGRLQGLQERFSFDTFVSGPANEFAFAVARRVATWADGH------FNPVLFHGPYGFG 188 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+A +++ P+ RVVYLTAE F F A++D KD LRN DLLLIDD+ Sbjct: 189 KTHLLNALAWEAMRTAPDKRVVYLTAERFTTTFVKALQDRQTQAFKDDLRNADLLLIDDV 248 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 F+ GK Q E H L +L++ ++VV ADR P+EL ++PR+RS LQ G+ + Sbjct: 249 HFVAGKTQTQEELFHTLIALVEDGRRVVLTADRSPTELSEMEPRLRSHLQAGLVCGIEPA 308 Query: 328 DYEMRFSILKNRL---AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR--H 382 D +R IL+ +L A + P + EVL +A T S REL+GA N LV R Sbjct: 309 DRSLRLGILERKLLTLATQGRFHP--SARPEVLQFLADRFTDSVRELEGALNTLVARVGG 366 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 A + E L HL T +K+ ++ IQ+ VA+HY + + DL+S RR R V RPR Sbjct: 367 DIARLTLDEAQAILRPHLSCT--ERKVTVDMIQKTVAEHYALKQADLISERRARAVARPR 424 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 QVAM+L+K +T RS P+IGRRFG RDHTTVLHAVR++E + D + +++++L R Sbjct: 425 QVAMWLAKQITTRSLPDIGRRFGGRDHTTVLHAVRRIEALKAEDAAIARDIDVLLR 480 >gi|293393721|ref|ZP_06638029.1| DNA-directed DNA replication initiator protein [Serratia odorifera DSM 4582] gi|291423765|gb|EFE96986.1| DNA-directed DNA replication initiator protein [Serratia odorifera DSM 4582] Length = 440 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 242/451 (53%), Gaps = 43/451 (9%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQE--------------EHSRIQGVEILV---R 112 N + L P F+ W++++YL I L + +Q V V R Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGTDAPLLRFEVGSKPMVQAVSQAVAESR 72 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 S V +TA+ PS P N + P + + ++P + F F+EG S Sbjct: 73 SAPAAPVARTAA-PS----RPSWDNAAPQPELSYRSNVNP--------KHTFDNFVEGKS 119 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+ N +VVY+ Sbjct: 120 NQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKANAKVVYM 174 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 175 HSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGN 234 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + Sbjct: 235 QQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENNIR 289 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMR 410 + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ E K + Sbjct: 290 LPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVT 348 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHT Sbjct: 349 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHT 408 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TVLHA RK+E++ E +K++ L R +S Sbjct: 409 TVLHACRKIEQLREESHDIKEDFSNLIRTLS 439 >gi|310765874|gb|ADP10824.1| Chromosomal replication initiator protein [Erwinia sp. Ejp617] Length = 463 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 155/469 (33%), Positives = 263/469 (56%), Gaps = 28/469 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS- 102 +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 11 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNNINSLLNNFCGA 69 Query: 103 -----RIQ-GVEILVRSVALPSVEKT-ASSPS-ITKLSPINTNISKSPIILGKQTISPVF 154 R + G + + ++V+ P + AS+P I++ +P+ + P + + Sbjct: 70 NVPLLRFEVGSKPVAQTVSQPVMASAHASAPGVISRPAPMRPSWDNVPAL-----AELSY 124 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 125 RSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLH 179 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 180 AVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 239 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 240 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRV 299 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 300 AIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 354 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K + Sbjct: 355 VREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKEL 413 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 414 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|288939765|ref|YP_003442005.1| chromosomal replication initiator protein DnaA [Allochromatium vinosum DSM 180] gi|288895137|gb|ADC60973.1| chromosomal replication initiator protein DnaA [Allochromatium vinosum DSM 180] Length = 453 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 164/477 (34%), Positives = 262/477 (54%), Gaps = 37/477 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N +++ ++LK ++ + +W L+ V ++ L P F+ W + Y + + Sbjct: 4 NAVALWEHCINQLKAELTSAEFNTWILPLQAR-VDGPLLRLLAPNRFVLDWTRKHYADRL 62 Query: 94 TKLFQEEHSRIQGVEI------LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +L HS+ + EI R P+ K A + S K S I+++++ Sbjct: 63 LELCAR-HSQGEVSEIHFEVGEFARESG-PAKGKGARAGS--KASVIDSDLATRRA---- 114 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + L++ F F TF+EG SN++A A+ IA Y NPLFI+ VGL Sbjct: 115 -------AANLNADFNFDTFVEGKSNQLARAASIQIARNPGGTY-----NPLFIYGGVGL 162 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A+ N + P+ RVVYL +E F+ A++ N + K + R+++ LLIDD Sbjct: 163 GKTHLMHAVGNVILASNPSARVVYLHSERFVAEMIKALQHNRIEDFKKTYRSVNALLIDD 222 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF H N+LL+S +Q+V ++DR P E+ L+ R+RSR G++V + Sbjct: 223 VQFFAGKERSQEEFFHTFNALLESGQQIVLSSDRFPKEVTGLEERLRSRFGWGLTVAIDP 282 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA- 385 D E +IL + E P E+V V R + ++ REL+GA +LV F Sbjct: 283 PDLETSVAILHCKATQLGVELP-----EDVAFFVGRRIRSNIRELEGALRRLVANAHFTG 337 Query: 386 -PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 PI T E A + L ++ + +++ +E+IQR VA +Y + +DLLS +R R++ RPRQ+ Sbjct: 338 KPI-TLEFAKQALRDVL-VAQDRQVSLENIQRTVADYYKLRTSDLLSAKRSRSLARPRQL 395 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG+ FG RDHTTVLHA RK++ + E+D T++++ L R+++ Sbjct: 396 AMALAKELTKHSLPEIGQAFGGRDHTTVLHATRKIKSLRESDATIEEDYRNLLRMLT 452 >gi|329891034|ref|ZP_08269377.1| chromosomal replication initiator protein dnaA [Brevundimonas diminuta ATCC 11568] gi|328846335|gb|EGF95899.1| chromosomal replication initiator protein dnaA [Brevundimonas diminuta ATCC 11568] Length = 318 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 129/306 (42%), Positives = 192/306 (62%), Gaps = 3/306 (0%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NP+F G GKTHLL AIA + + +P+ +VVYLTAE F+ F A++D K+ Sbjct: 9 FNPVFFCGPYGYGKTHLLNAIAWEAQRLRPDAKVVYLTAERFLSTFVRAMQDRSTAAFKE 68 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 SLR+ D+LL+DD+QF+ GK Q E + L +L++ K++V +ADR P L ++PR+RS Sbjct: 69 SLRSADMLLLDDVQFVGGKTSTQEELLNTLTALIEDGKRIVLSADRAPMALTDVEPRLRS 128 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRL-AISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 L G++ P+ D +++ ++ ++RL A++Q +VL H+ S REL+G Sbjct: 129 HLAAGLTCPVEAADRDLKVAVAQSRLNALAQLGVVTGEARADVLEHLIDRTPGSMRELEG 188 Query: 374 AFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A N L S LT + LL + TG +++ +++IQ+ VA+H+N+ + DLLS Sbjct: 189 AVNTLAAVAGSRLSALTVDEVQSLLGAALRTGPERRITVDEIQKTVAEHFNLKQADLLSE 248 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR R + RPRQVAMYL K T RS+P+IGRRFG RDHTTVLH VRK+E+++ D + ++ Sbjct: 249 RRTRAIARPRQVAMYLCKQHTTRSYPDIGRRFGGRDHTTVLHGVRKIEELMPKDDQIARD 308 Query: 493 VELLKR 498 VE L R Sbjct: 309 VEALTR 314 >gi|21229479|ref|NP_635396.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188989397|ref|YP_001901407.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. B100] gi|38257667|sp|Q8PEH5|DNAA_XANCP RecName: Full=Chromosomal replication initiator protein DnaA gi|226735863|sp|B0RLI8|DNAA_XANCB RecName: Full=Chromosomal replication initiator protein DnaA gi|21110939|gb|AAM39320.1| chromosomal replication initiator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167731157|emb|CAP49329.1| chromosomal replication initiator protein [Xanthomonas campestris pv. campestris] Length = 442 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 164/482 (34%), Positives = 249/482 (51%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVE 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + G + +V S P +P ++ Sbjct: 48 QVRERYLPRIRELL----AYFAGNGEVALAVG--------SRPR----APEPLPAPQAVA 91 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 92 SAPAAAPIVPFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|238917984|ref|YP_002931498.1| chromosomal replication initiator protein DnaA, [Edwardsiella ictaluri 93-146] gi|259645249|sp|C5BHC5|DNAA_EDWI9 RecName: Full=Chromosomal replication initiator protein DnaA gi|238867552|gb|ACR67263.1| chromosomal replication initiator protein DnaA, putative [Edwardsiella ictaluri 93-146] Length = 463 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 151/479 (31%), Positives = 259/479 (54%), Gaps = 34/479 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYINNINGL 62 Query: 97 FQEEHS--------RIQGVEILVRSVALPSVEKTASSPSITKLS----PINTNISKSPII 144 + + I+ +V+ + + P+ + S P ++ P + Sbjct: 63 LNDFCGSDAPVLRFEVGSKPIVPVAVSSAASSGASVPPAAVRASSLARPSWERVTAQPEL 122 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + ++P + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 123 SYRSNVNP--------KHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 169 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 170 TGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 229 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 230 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 289 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 290 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 344 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 345 FTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 403 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 404 QMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|325922759|ref|ZP_08184493.1| chromosomal replication initiator protein DnaA [Xanthomonas gardneri ATCC 19865] gi|325546755|gb|EGD17875.1| chromosomal replication initiator protein DnaA [Xanthomonas gardneri ATCC 19865] Length = 442 Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 163/482 (33%), Positives = 251/482 (52%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVD 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + E+ ++A+ S + +P + Sbjct: 48 QVRERYLPRIRELVA---YFVGNGEV---ALAVGSRPRAPDPLPAPMAAPSAPAAAPIVP 101 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 G LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 102 FAGN----------LDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A++D K + ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDA 206 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGKDRTQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + +I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|257866276|ref|ZP_05645929.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC30] gi|257873208|ref|ZP_05652861.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC10] gi|257800234|gb|EEV29262.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC30] gi|257807372|gb|EEV36194.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC10] Length = 445 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 154/473 (32%), Positives = 260/473 (54%), Gaps = 38/473 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLET 92 + +SI+ + K ++ P Y++W + S N + + VP++ K+ W KN + Sbjct: 3 SADSIWQDLQRSFKEELNPASYSAWIETANVLSFEKNQLLIEVPSDLHKSYWEKNLAAKI 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + F + G E++ V + E ++PS + + ++ P Sbjct: 63 VEMGFMK-----TGEELIPSFVTVEEAEALKTAPSTIQTA-------------AEENERP 104 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL Sbjct: 105 P-KSILNEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + ++PN ++ Y+++E F F ++I+ N + ++ RN+DLLL+DD+QFL Sbjct: 159 MHAIGHQMLLKRPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLV 218 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E Sbjct: 219 NKEGTQEEFFNTFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLET 278 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+ + E +L I ++ L ++A + ++ REL+GA LV +FA + Sbjct: 279 RTAILRKK-----AEAERLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFATMQNSD 330 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A E + L ++ + ++ I IQ VAK+Y+I NDL +RV+ +V PRQ+AMY Sbjct: 331 ITTSLAAEAIKALKSSHGSTQVSILQIQEEVAKYYHIHVNDLKGKKRVKGIVVPRQIAMY 390 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 LS+ +T S P+IG FG +DHTTV+HA K++ ++ETD T+K E+ +K+++ Sbjct: 391 LSRELTDSSLPKIGGEFGGKDHTTVIHAHEKIQHLVETDSTIKNEIAEIKQIL 443 >gi|292490136|ref|YP_003533031.1| chromosomal replication initiator protein dnaA [Erwinia amylovora CFBP1430] gi|292901140|ref|YP_003540509.1| chromosomal replication initiator protein [Erwinia amylovora ATCC 49946] gi|291200988|emb|CBJ48127.1| chromosomal replication initiator protein [Erwinia amylovora ATCC 49946] gi|291555578|emb|CBA24173.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora CFBP1430] gi|312174329|emb|CBX82582.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora ATCC BAA-2158] Length = 463 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 263/469 (56%), Gaps = 28/469 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS- 102 +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 11 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNNINALLNNFCGA 69 Query: 103 -----RIQ-GVEILVRSVALPSVEKT-ASSPSI-TKLSPINTNISKSPIILGKQTISPVF 154 R + G + + ++V+ P + AS+P + ++ +P + +P + + Sbjct: 70 NVPLLRFEVGSKPVAQTVSQPVMASAHASAPGVVSRPAPTRPSWDNAPAL-----AELSY 124 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 125 RSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLH 179 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 180 AVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 239 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 240 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRV 299 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 300 AIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 354 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K + Sbjct: 355 VREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKEL 413 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 414 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|283480419|emb|CAY76335.1| Chromosomal replication initiator protein dnaA [Erwinia pyrifoliae DSM 12163] Length = 475 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 263/469 (56%), Gaps = 28/469 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS- 102 +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 23 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNNINSLLNNFCGA 81 Query: 103 -----RIQ-GVEILVRSVALPSVEKT-ASSPSI-TKLSPINTNISKSPIILGKQTISPVF 154 R + G + + ++V+ P + AS+P + ++ +P+ + P + + Sbjct: 82 NVPLLRFEVGSKPVAQTVSQPVMASAHASAPGVMSRPAPMRPSWDNVPAL-----AELSY 136 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 137 RSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLH 191 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 192 AVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 251 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 252 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRV 311 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 312 AIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 366 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K + Sbjct: 367 VREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKEL 425 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 426 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 474 >gi|260437689|ref|ZP_05791505.1| DNA replication initiator protein, ATPase [Butyrivibrio crossotus DSM 2876] gi|292809915|gb|EFF69120.1| DNA replication initiator protein, ATPase [Butyrivibrio crossotus DSM 2876] Length = 450 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 252/467 (53%), Gaps = 45/467 (9%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP----TNFLKAWIKNRYLETITKLFQEE 100 ++ +G + +W L+ +S+ V + VP N +K N ++ TI+ F Sbjct: 17 KISYDMGDLPFKTWILPLQPYSIDDYTVTIFVPDPRVVNHIKNNYTNHFITTISNFFDHS 76 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + VR + S+P + P+ K P+ + S + + L+ Sbjct: 77 YD--------VRFI---------STPDLANPQPV----VKEPV---ESLNSLIIKAGLNP 112 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F TF+ G +N A A+ ++AE Y NPLF++ VGLGKTHL+QAI N Sbjct: 113 KYTFETFVVGDNNNFAHAASLAVAESPGDTY-----NPLFLYGGVGLGKTHLMQAIGNYI 167 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIR---DNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 IK+ P+L+V+Y+T+E F +I+ + N ++ RN+D+LLIDD+QF+ GK Sbjct: 168 IKQNPSLKVMYVTSEIFTNELIESIKTEKNTSNKNFREKYRNVDVLLIDDIQFIIGKEST 227 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQV+ ++DRPP + E+L+ R++SR G+ V + +YE R +IL Sbjct: 228 QDEFFHTFNTLREAKKQVIISSDRPPKDFETLEDRLKSRFTNGLLVDISPPNYETRMAIL 287 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + I NI+ +VL ++A + ++ REL+G+ +LV F+ PI +A+ Sbjct: 288 HKKGEIEG-----YNIDMDVLEYIATNIKSNIRELEGSLTKLVAFSKFSKKPI-NVSLAE 341 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+L ++ +++ E I + VA+HY IS DL+S +R + + PRQ+AMYL + +T Sbjct: 342 EVLRDFISPNAHREVTPELIIQTVAEHYQISVEDLISKKRDQKIAWPRQIAMYLCRSLTD 401 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +IG GDRDHTTV H KV + L D + +E++K+ I+ Sbjct: 402 IPLTKIGSYLGDRDHTTVSHGCDKVAETLAKDASFANTLEIIKKKIN 448 >gi|257875893|ref|ZP_05655546.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC20] gi|257810059|gb|EEV38879.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC20] Length = 445 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 154/473 (32%), Positives = 260/473 (54%), Gaps = 38/473 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLET 92 + +SI+ + K ++ P Y++W + S N + + VP++ K+ W KN + Sbjct: 3 SADSIWQDLQRSFKEELNPASYSAWIETANVLSFEKNQLLIEVPSDLHKSYWEKNLAAKI 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + F + G E++ V + E ++PS + + ++ P Sbjct: 63 VEMGFMK-----TGEELIPSFVTVEEAEALKTAPSTIQTA-------------AEENERP 104 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL Sbjct: 105 P-KSILNEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + ++PN ++ Y+++E F F ++I+ N + ++ RN+DLLL+DD+QFL Sbjct: 159 MHAIGHQMLLKRPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLV 218 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E Sbjct: 219 NKEGTQEEFFNTFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLET 278 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+ + E +L I ++ L ++A + ++ REL+GA LV +FA + Sbjct: 279 RTAILRKK-----AEAERLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFATMQNSD 330 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A E + L ++ + ++ I IQ VAK+Y+I NDL +RV+ +V PRQ+AMY Sbjct: 331 ITTSLAAEAIKALKSSHGSTQVSILQIQEEVAKYYHIHVNDLKGKKRVKGIVVPRQIAMY 390 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 LS+ +T S P+IG FG +DHTTV+HA K++ ++ETD T+K E+ +K+++ Sbjct: 391 LSRELTDSSLPKIGGEFGGKDHTTVIHAHEKIQHLVETDPTIKNEIAEIKQIL 443 >gi|281418689|ref|ZP_06249708.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum JW20] gi|281407773|gb|EFB38032.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum JW20] Length = 443 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 154/461 (33%), Positives = 253/461 (54%), Gaps = 46/461 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LKN++ + +W + + S+ N ++L+VP F K +++RY I Sbjct: 16 LKNELTEISFNTWIKTIDPLSLTGNTINLAVPAEFNKGILESRYQTLIKNA--------- 66 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT------ISPVFGSPLD 159 ++ V E I + P N++K L KQT SP+ S L+ Sbjct: 67 -----IKQVTFKEYE-------IAFIVPSQENLNK----LTKQTESAGNEDSPL--SVLN 108 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++ F TF+ G+SNR A AA ++AE Y NPLFI+ VGLGKTHL+ AI + Sbjct: 109 PKYTFDTFVIGNSNRFAHAAALAVAEAPGKAY-----NPLFIYGGVGLGKTHLMHAIGHY 163 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 +++ + RV+Y+++E F +AI+DN + RNID+LLIDD+QF+ GK + Sbjct: 164 ILEQNSSQRVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQFIAGKERTEE 223 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L ++ KQ++ ++D+PP E+ SL+ R+RSR + G+ + D E R +IL+ Sbjct: 224 EFFHTFNALYEANKQIILSSDKPPKEI-SLEDRLRSRFEWGLIADMQAPDLETRIAILRK 282 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELL 397 + + L + EV++ +A + ++ REL+GA N+++ S +T E+A E L Sbjct: 283 KAQLEN-----LTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEITVELASEAL 337 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 +++ + K + IQ VA++++I + S +R R + PRQ+AMYL + +T S Sbjct: 338 KDILSANKAKVLNCTTIQEAVARYFDIRPEEFKSKKRTRDIAFPRQIAMYLCRELTEMSL 397 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 P+IG FG RDHTTV+HA K+ K +E++ ++ V +KR Sbjct: 398 PKIGEEFGGRDHTTVIHACEKISKEIESNSETRRAVSEIKR 438 >gi|293611384|ref|ZP_06693680.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826256|gb|EFF84625.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123493|gb|ADY83016.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter calcoaceticus PHEA-2] Length = 469 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 160/479 (33%), Positives = 266/479 (55%), Gaps = 29/479 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V + L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-EGTLRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINT-NISKSPIILGKQTISP 152 ++ R++ VEILV S L S E+ A++ + + +P + + K P + + Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSGEQPATTTAALQTAPQQSIKVKKEPDSISSSPTTN 120 Query: 153 VFGSP-------LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHAS 204 +P L+ +F FS F+EG SN++A T + + ++ + + NPLF++ Sbjct: 121 SVVNPKTPKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGP 175 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL Sbjct: 176 TGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLL 235 Query: 265 IDDMQFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV Sbjct: 236 VDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVG 295 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--R 381 + D E R IL + + E+ +++ + +A+ V + REL+GA N++V R Sbjct: 296 VEPPDIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISR 350 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 API + + L L T + +E+IQR+V++++ I +L+ +R R RP Sbjct: 351 FKGAPIDLDVVRESLKDVLAIRART--ISVENIQRVVSEYFRIPLKELVGPKRTRIYARP 408 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AM L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 409 RQLAMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLL 467 >gi|262374719|ref|ZP_06067991.1| chromosomal replication initiator protein DnaA [Acinetobacter junii SH205] gi|262310375|gb|EEY91467.1| chromosomal replication initiator protein DnaA [Acinetobacter junii SH205] Length = 464 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 161/484 (33%), Positives = 266/484 (54%), Gaps = 44/484 (9%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V ++ L P + +I++ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-DGVMRLYAPNPYWTRYIQDNHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEK----------TASSPSITK----LSPINTNIS 139 ++ R++ VEILV S L S E+ SSP K L N +S Sbjct: 61 EQLSEGRVRQVEILVDSRPGTILSSSEQPATTTAALSTAVSSPMKVKKEAELVQANPPVS 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNP 198 K P K+ ++P+F FS F+EG SN++A T + + ++ + + NP Sbjct: 121 KIP---KKRQLNPLF--------TFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NP 164 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LF++ GLGKTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R Sbjct: 165 LFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCR 224 Query: 259 NIDLLLIDDMQFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ++DLLL+DD+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR Sbjct: 225 SLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFS 284 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+SV + D E R IL + + E+ +++ + +A+ V + REL+GA N+ Sbjct: 285 WGLSVGVEPPDIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNK 339 Query: 378 LVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 +V F + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R Sbjct: 340 VVAISRFKGTSIDLDVVRESLKDVLAI-RARTISVENIQRVVSEYFRIPLKELVGPKRTR 398 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 RPRQ+AM L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L Sbjct: 399 IYARPRQLAMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFNEDYKNL 458 Query: 497 KRLI 500 RL+ Sbjct: 459 LRLL 462 >gi|332750523|gb|EGJ80932.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-671] gi|332764073|gb|EGJ94310.1| chromosomal replication initiator protein DnaA [Shigella flexneri 2930-71] Length = 444 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 148/442 (33%), Positives = 241/442 (54%), Gaps = 21/442 (4%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRSVA-LPSVEKTASS 125 N + L P F+ W++++YL I L F + E+ + V P T++ Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNV 72 Query: 126 PSITKLSPINTNISKSPIILGKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + +++ + G + P + S ++ + F F+EG SN++A AA Sbjct: 73 AAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAAC 132 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 133 QVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDM 187 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 188 VKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDR 247 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV + Sbjct: 248 YPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFI 302 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA Sbjct: 303 AKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVA 361 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ Sbjct: 362 EYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKI 421 Query: 480 EKMLETDITLKKEVELLKRLIS 501 E++ E +K++ L R +S Sbjct: 422 EQLREESHDIKEDFSNLIRTLS 443 >gi|302384445|ref|YP_003820267.1| chromosomal replication initiator protein DnaA [Clostridium saccharolyticum WM1] gi|302195073|gb|ADL02644.1| chromosomal replication initiator protein DnaA [Clostridium saccharolyticum WM1] Length = 458 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 147/454 (32%), Positives = 252/454 (55%), Gaps = 31/454 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W LK HSV V ++VP +I+ +Y + K+ EE + G E V V Sbjct: 27 FKTWLLPLKVHSVNGEKVIVTVPDVEFLGYIRKKY-GFLLKITIEE---VTGFECTVDFV 82 Query: 115 ALPSVEKTASSPSITKLSPINT--NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 ++K A++ NT +S+S II L+ ++ F TF+ G++ Sbjct: 83 VENQIQKEAATAPAGNTLITNTMNQVSQSAIITAN----------LNPKYTFDTFVVGAN 132 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N +A A+ ++AE Y NPLFI+ VGLGKTHL+ +I + +K P +V+Y+ Sbjct: 133 NNLAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSIGHFILKNNPAAKVLYV 187 Query: 233 TAEYFMWRFASAIRDNCALN---LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 T+E F AIR+ + ++ RN D+LLIDD+QF+ GK Q EF H N+L Sbjct: 188 TSEKFTNELIDAIRNKNNFSPTEFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNALY 247 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 ++ KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R +IL+ + +E Sbjct: 248 EAKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK-----EEME 302 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 NI+ EV+ ++A + ++ REL+GA ++V +T E+A+E L +++ + + Sbjct: 303 GYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLDNKEITVELAEEALKDIISPNDKR 362 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ E + ++VA HY ++ D+ S +R + +V PRQ+ MYL + M IG+ G R Sbjct: 363 EVTPELVIQVVADHYGLTPLDICSQKRNKEIVYPRQIVMYLCREMVGTPLQMIGKFLGGR 422 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTT++H + K+ + + +L +E+LK+ I+ Sbjct: 423 DHTTIIHGIEKITANADKNESLNNTIEILKKKIN 456 >gi|259910295|ref|YP_002650651.1| Chromosomal replication initiator protein [Erwinia pyrifoliae Ep1/96] gi|224965917|emb|CAX57450.1| Chromosomal replication initiator protein [Erwinia pyrifoliae Ep1/96] Length = 463 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 263/469 (56%), Gaps = 28/469 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS- 102 +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 11 ARLQDELPATEFSMWIRPLQ-AELNDNTLALYAPNRFVLDWVRDKYLNNINSLLNNFCGA 69 Query: 103 -----RIQ-GVEILVRSVALPSVEKT-ASSPSI-TKLSPINTNISKSPIILGKQTISPVF 154 R + G + + ++V+ P + AS+P + ++ +P+ + P + + Sbjct: 70 NVPLLRFEVGSKPVAQTVSQPVMASAHASAPGVMSRPAPMRPSWDNVPAL-----AELSY 124 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 125 RSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLH 179 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 180 AVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 239 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 240 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRV 299 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 300 AIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDF 354 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K + Sbjct: 355 VREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKEL 413 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 414 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|152972609|ref|YP_001337755.1| chromosomal replication initiation protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262040466|ref|ZP_06013709.1| DNA replication initiator protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|150957458|gb|ABR79488.1| chromosomal replication initiation protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259042219|gb|EEW43247.1| DNA replication initiator protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 444 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 152/443 (34%), Positives = 247/443 (55%), Gaps = 23/443 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP--SVEKTASSPS 127 N + L P F+ W++++YL I L + ++ A P S++K A SP+ Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLND-FCGADAPQLRFEVGAKPASSLQKGAVSPA 71 Query: 128 ITKLSPINTNISKS-PIIL--GKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 + +++ P I+ G + P + S ++ + F F+EG SN++A AA Sbjct: 72 AAAIPAAQVQTARAAPTIVRPGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAA 131 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 + +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 132 RQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIVARKPNAKVVYMHSERFVQD 186 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +D Sbjct: 187 MVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSD 246 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV Sbjct: 247 RYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFF 301 Query: 360 VARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ V Sbjct: 302 IAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTV 360 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK Sbjct: 361 AEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRK 420 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 +E++ E +K++ L R +S Sbjct: 421 IEQLREESHDIKEDFSNLIRTLS 443 >gi|304414287|ref|ZP_07395655.1| chromosomal replication initiator protein and DNA-binding transcriptional dual regulator [Candidatus Regiella insecticola LSR1] gi|304283501|gb|EFL91897.1| chromosomal replication initiator protein and DNA-binding transcriptional dual regulator [Candidatus Regiella insecticola LSR1] Length = 466 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 154/475 (32%), Positives = 260/475 (54%), Gaps = 27/475 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL+ ++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQEELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS----PINTNISKSPIILGKQT--I 150 + + + +L V V +T + +I+ + PI N++ LG + Sbjct: 67 LNDFCG--ENIPLLRFEVGNKPVIQTTNPSAISSVGVPIVPITHNVTGR---LGWDSALT 121 Query: 151 SPV--FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++++ F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 122 QPQRDYRSNINTKHSFDNFVEGKSNQLARAAARQVADNPGKAY-----NPLFLYGCTGLG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N I + +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 177 KTHLLHAVGNGIIANKSKAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSLDALLIDDI 236 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ + R++SR G++V + Sbjct: 237 QFFSNKERSQEEFFHTFNTLLEGNQQIILTSDRYPKEINGVADRLKSRFGWGLTVAIDPP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 297 ELETRVAIL-----MKKADENDIVLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQR VA++Y + DLLS RR R+V RPRQ+AM Sbjct: 352 AITIDFVREALCDLLALQE-KLVTIDNIQRTVAEYYKVKVTDLLSKRRSRSVARPRQMAM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++K +T S PEIG FG RDHTTVLHA RK+E++ E + K++ L R +S Sbjct: 411 AMAKELTNHSLPEIGNAFGGRDHTTVLHACRKIEQLREENHHFKEDFLNLIRTLS 465 >gi|323486749|ref|ZP_08092068.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14163] gi|323694891|ref|ZP_08109041.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14673] gi|323399888|gb|EGA92267.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14163] gi|323500981|gb|EGB16893.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14673] Length = 456 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 150/452 (33%), Positives = 250/452 (55%), Gaps = 29/452 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + + V N + + VP +IK +Y L Q + G+E + V Sbjct: 27 FKTWLLPTEPYDVKGNTLQILVPDIHFLGYIKRKY----GFLLQITIEELTGIECELEFV 82 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 L V A K IN + + +Q I + L+ R+ F +F+ G++N Sbjct: 83 TLEQV--GARQEEADKSQLINRALE-----VNRQVIQ---NANLNPRYTFDSFVVGANNN 132 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A A+ ++AE Y NPLFI+ VGLGKTHL+ +I + +K P +V+Y+T+ Sbjct: 133 LAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSIGHFILKNNPQAKVLYVTS 187 Query: 235 EYFMWRFASAIRDNCALN---LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 E F AIR+ ++ ++ RN D+LLIDD+QF+ GK Q EF H NSL ++ Sbjct: 188 EKFTNELIDAIRNKNNISTTEFREKYRNNDILLIDDIQFIIGKESTQEEFFHTFNSLYEA 247 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R +IL+ + +E Sbjct: 248 KKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK-----EELEGY 302 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKM 409 NI+ EV+ ++A V ++ REL+GA ++V +T E+A+E L L++ ETK++ Sbjct: 303 NIDNEVIKYIATNVKSNIRELEGALTKIVALSKLNKQEITIELAEEALKDLISPNETKEV 362 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 E I ++VA H+ I+ D+ S +R + VV PRQ+ M+L + MT IG+ G RDH Sbjct: 363 TPELIIQVVADHFGITPLDISSQKRNKEVVFPRQIVMFLCRSMTDTPLQAIGKYLGGRDH 422 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TT++H K+ ++ + +L+ +E+LK+ I+ Sbjct: 423 TTIIHGYEKIGADMDKNESLRNTIEILKKKIN 454 >gi|320449107|ref|YP_004201203.1| chromosomal replication initiator protein DnaA [Thermus scotoductus SA-01] gi|320149276|gb|ADW20654.1| chromosomal replication initiator protein DnaA [Thermus scotoductus SA-01] Length = 447 Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 155/468 (33%), Positives = 260/468 (55%), Gaps = 36/468 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ + ++ + + +WF+R++ + ++ L+VPT+F WIK Y E I Sbjct: 14 EAVWQHILEHIRRNITEVEFHTWFERIRPLGIQDGVLQLAVPTSFALDWIKRHYAELIQ- 72 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E L A P + PS+ + +I +P S Sbjct: 73 ------------EALGLLGAQPPRFELKVVPSVA----VQEDIFHTP------APSEAAK 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ A Sbjct: 111 PNLNPKYTFENFVVGPNNSMAHAAAVAVAESPGRAY-----NPLFIYGGVGLGKTHLMHA 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + ++ KR P+L++ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ GK Sbjct: 166 VGHSVAKRFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDIQFIAGKE 225 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D E R + Sbjct: 226 RTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIA 285 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIA 393 ILK E L I+EEVL ++AR VT++ REL+GA + + S + LT +A Sbjct: 286 ILK-----MNAEQRGLRISEEVLEYIARQVTSNIRELEGALMRTIAYASLNGVELTRAVA 340 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + LS + + E ++ +I R VA+++ + DL+ R + VV PRQ+AM+L + +T Sbjct: 341 AKALSDIFASKEV-EVDPHEIVRKVAEYFALRPEDLVGGGRRKEVVLPRQIAMFLVRELT 399 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG+ FG RDHTTVL+A++KV+++ E+D ++K + LK ++ Sbjct: 400 RSSLPEIGQLFGGRDHTTVLYAIQKVQELSESDREVQKLLRSLKEALT 447 >gi|299768251|ref|YP_003730277.1| chromosomal replication initiation protein [Acinetobacter sp. DR1] gi|298698339|gb|ADI88904.1| chromosomal replication initiation protein [Acinetobacter sp. DR1] Length = 468 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 262/478 (54%), Gaps = 28/478 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-EGILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 ++ R++ VEILV S + S + ++ ++ P + + K P + + Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSSEQPATTTAALQTAPPQSIKVKKEPESVSSPHANS 120 Query: 153 VFGSP------LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASV 205 V L+ +F FS F+EG SN++A T + + ++ + + NPLF++ Sbjct: 121 VVNPKTSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+ Sbjct: 176 GLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLV 235 Query: 266 DDMQFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 236 DDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGV 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RH 382 D E R IL + + E+ +++ + +A+ V + REL+GA N++V R Sbjct: 296 EPPDIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRF 350 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 API + + L L T + +E+IQR+V++++ I +L+ +R R RPR Sbjct: 351 KGAPIDLDVVRESLKDVLAIRART--ISVENIQRVVSEYFRIPLKELVGPKRTRIYARPR 408 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 Q+AM L++ +T SFPEIG FG RDH+TV+HA KV + D ++ + L RL+ Sbjct: 409 QLAMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVTSLRGEDPIFDEDYKNLLRLL 466 >gi|237729024|ref|ZP_04559505.1| chromosomal replication initiation protein [Citrobacter sp. 30_2] gi|226909646|gb|EEH95564.1| chromosomal replication initiation protein [Citrobacter sp. 30_2] Length = 471 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 154/478 (32%), Positives = 260/478 (54%), Gaps = 28/478 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 R + G + + +++ P A + ++ P + P G Sbjct: 67 LNNFCGADAPQLRFEVGTKPVTQTLKTPVNNVVAPAHVAQQVQPQRAAPAARP---GWDN 123 Query: 150 I----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 124 VPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 178 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 179 GLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 238 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 239 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 298 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 299 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 353 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 354 TGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQ 412 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 413 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|307133247|ref|YP_003885263.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Dickeya dadantii 3937] gi|306530776|gb|ADN00707.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Dickeya dadantii 3937] Length = 462 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 153/478 (32%), Positives = 257/478 (53%), Gaps = 33/478 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYINNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS-----------KSPIIL 145 + G++ + + S T + S S ++P Sbjct: 63 LND----FCGMDAPLLRFEVGSKPMTPAVVSTGHHSAAAPAPQARAASPVRPSWETPAAQ 118 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + T + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 119 AEHT----YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 169 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 170 GLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 229 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 230 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 289 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 290 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 344 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 345 TGRSITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 403 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 404 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|296100372|ref|YP_003610518.1| chromosomal replication initiator protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054831|gb|ADF59569.1| chromosomal replication initiator protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 442 Score = 244 bits (622), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 149/441 (33%), Positives = 241/441 (54%), Gaps = 21/441 (4%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRSVALPSVEKTASSP 126 N + L P F+ W++++YL I L F + E+ + V +V +T + Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDAPQLRFEVGTKPVT-QTVRETVNVA 71 Query: 127 SITKLSPINTNISKSPIILGKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 + +P G + P + S ++ + F F+EG SN++A AA+ Sbjct: 72 VPAQAAPAPAPRVAPAARPGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQ 131 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 132 VADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMV 186 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 187 KALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRY 246 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV +A Sbjct: 247 PKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIA 301 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA+ Sbjct: 302 KRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAE 360 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 +Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E Sbjct: 361 YYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIE 420 Query: 481 KMLETDITLKKEVELLKRLIS 501 ++ E +K++ L R +S Sbjct: 421 QLREESHDIKEDFSNLIRTLS 441 >gi|167951344|ref|ZP_02538418.1| chromosomal replication initiator protein DnaA [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 424 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 149/446 (33%), Positives = 247/446 (55%), Gaps = 51/446 (11%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQE---EHSRIQGVEILVRSVALP------SVEKT 122 + L P F+ W++N Y++ I E + I VEI++ + P SV+K Sbjct: 13 IRLLAPNTFVLDWVRNHYIKIINSYLDEICKDERPI--VEIIIGTRKKPTQLPDRSVKKQ 70 Query: 123 AS---SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 A+ S + +S I +N+++S F F +F+EG SN++A A Sbjct: 71 ATIERSDKLESVSAIESNLNRS--------------------FTFESFVEGKSNQLARAA 110 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 + IA Y NPLFI+ VGLGKTHL+ A+ NA + PN +V+YL +E F+ Sbjct: 111 SMQIASNPGKAY-----NPLFIYGGVGLGKTHLMHAVGNAILSENPNAKVLYLHSERFVA 165 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 A++ N K R+++ LLIDD+QF GK Q EF H N+L +S +Q++ ++ Sbjct: 166 DMVRALQHNKIDEFKKRYRSVNALLIDDIQFFAGKERSQEEFFHTFNALFESQQQIILSS 225 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI--NEEV 356 DR P E++ L+ R++SR G++V + D E R +ILK++ +LN+ +EV Sbjct: 226 DRFPKEVKGLEERLKSRFGWGLTVAIEPPDLETRVAILKSKAL-------QLNVELGDEV 278 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQ 415 + + + ++ REL+GA ++V +F ++ E + L ++ + K++ IE+IQ Sbjct: 279 AFFIGKKIRSNIRELEGALRRVVANSTFTGKEISIEFSKNALRDML-AAQAKQVTIENIQ 337 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + V +++ I +DLLS +R R++ RPRQ+AM L+K +T S PEIG FG RDHTTV+HA Sbjct: 338 KTVCEYFQIRTSDLLSAKRSRSIARPRQIAMTLAKELTNHSLPEIGSAFGGRDHTTVIHA 397 Query: 476 VRKVEKMLETDITLKKEVELLKRLIS 501 +K+ ++ ++D + ++ L R +S Sbjct: 398 NKKINELRDSDPRIAEDYSNLLRTLS 423 >gi|118587493|ref|ZP_01544918.1| initiation of chromosome replication [Oenococcus oeni ATCC BAA-1163] gi|118432143|gb|EAV38884.1| initiation of chromosome replication [Oenococcus oeni ATCC BAA-1163] Length = 466 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 133/346 (38%), Positives = 199/346 (57%), Gaps = 12/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F T++ G +N +A +AA +++E Y NPL I+ S GLGKTHL++AI Sbjct: 130 LNQNFTFDTWVIGDANELATSAAMAVSEQPGRQY-----NPLLIYGSSGLGKTHLMEAIG 184 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + QP+ V Y+T + FM + +AI + + N+DLLL+DD+Q LQGK Sbjct: 185 NRLKELQPDAIVRYITTDDFMNDWVNAISKKTTTDFTSTYENVDLLLVDDIQMLQGKDRF 244 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF ++ N + S KQ+V +D P ++ L+ R+ SR GV+ + D+ R +IL Sbjct: 245 QEEFFNIFNKITKSQKQIVMTSDVLPKDIPGLNARLVSRFMQGVAYDIQKPDFPTRLAIL 304 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 KN+ E+ ++I+ + L +A + T+ REL+GAFN L + A ++ Sbjct: 305 KNK-----SEEVGISIDNQTLTLIAEQIDTNVRELEGAFNTLTLMARAGRPINVSNAQKI 359 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L HL N K + + DIQ+ VA YN+S NDL+ +R +V PRQVAMYL + +T S Sbjct: 360 LEHL-NITRQKVITLPDIQKTVADDYNVSINDLIGKKRNSDIVLPRQVAMYLIRTLTDTS 418 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P+IG+ FG RDHTTV+H K+ ++ETD LK+ +E L I E Sbjct: 419 LPKIGQAFGGRDHTTVMHGTEKIADLIETDYALKQRIENLSTKIKE 464 >gi|257871389|ref|ZP_05651042.1| chromosomal replication initiator protein [Enterococcus gallinarum EG2] gi|257805553|gb|EEV34375.1| chromosomal replication initiator protein [Enterococcus gallinarum EG2] Length = 445 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 156/473 (32%), Positives = 259/473 (54%), Gaps = 38/473 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLET 92 + +SI+ + K ++ P Y++W + S N + + VP++ K+ W KN + Sbjct: 3 SADSIWRDLQKSFKEELNPASYSAWIETANILSFEKNQLLIEVPSDLHKSYWEKNLAAKI 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + F + G E++ V E SPS+ + +++ GK TI Sbjct: 63 VEMGFMK-----TGEELIPSFVTAEEAEALQKSPSVEQ------TVTEKAEKKGK-TI-- 108 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL Sbjct: 109 -----LNEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + ++PN ++ Y+++E F F ++I+ N + ++ RN+DLLL+DD+QFL Sbjct: 159 MHAIGHQMLLKRPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLV 218 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E Sbjct: 219 NKEGTQEEFFNTFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLET 278 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+ + E +L I ++ L ++A + ++ REL+GA LV +FA + Sbjct: 279 RTAILRKK-----AEAERLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFATMQNSD 330 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A E + L ++ + ++ I IQ VAK+Y+I NDL +RV+ +V PRQ+AM+ Sbjct: 331 ITTSLAAEAIKALKSSHGSTQVSILQIQEEVAKYYHIHINDLKGKKRVKGIVVPRQIAMF 390 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 LS+ +T S P+IG FG +DHTTV+HA K++ + ETD T+K E+ +K ++ Sbjct: 391 LSRELTDNSLPKIGAEFGGKDHTTVIHAHEKIQHLSETDPTIKNEISEIKNIL 443 >gi|255320702|ref|ZP_05361879.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SK82] gi|262380667|ref|ZP_06073820.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SH164] gi|255302318|gb|EET81558.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SK82] gi|262297615|gb|EEY85531.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SH164] Length = 460 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 154/476 (32%), Positives = 262/476 (55%), Gaps = 32/476 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +++A W + L L + + L P + +I+ +LE IT L Sbjct: 2 LWTDCLTRLRQELSDNIFAMWIRPLVAEE-LEDTLRLYAPNPYWTRYIQEHHLELITILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASS------PSITKLSPINTNISKSPIILGK 147 ++ R++ VEILV S L + E+ A++ P+ +S P K Sbjct: 61 EQMSEGRVRKVEILVDSRPGAILSAAEQPATTTAALEHPASMPVSRPKKEKEAEPAKQNK 120 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + + L+ F F+ F+EG SN++A T + + ++ + + NPLF++ G Sbjct: 121 KRL-------LNPLFTFALFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPTG 168 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QA+ NA ++ +PN RV+Y+TAE F+ F S+++ K + R++DLLL+D Sbjct: 169 LGKTHLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQRGKVEEFKKNCRSLDLLLVD 228 Query: 267 DMQFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 229 DIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVE 288 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 D E R IL + + E ++++ + +A+ V + REL+GA N++V F Sbjct: 289 PPDIETRIEIL-----LKKAESNEIDLPRNCALFIAQQVVANVRELEGALNKVVAISRFK 343 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+ Sbjct: 344 GTAIDLDVVRESLKDVLAI-RARTISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQL 402 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AM L++ +T SFPEIG FG RDH+TV+HA KV+ + D ++ + L RL+ Sbjct: 403 AMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVQSLRAEDPIFNEDYKNLLRLL 458 >gi|116490127|ref|YP_809648.1| chromosomal replication initiator protein DnaA [Oenococcus oeni PSU-1] gi|290889521|ref|ZP_06552611.1| hypothetical protein AWRIB429_0001 [Oenococcus oeni AWRIB429] gi|122277682|sp|Q04HR6|DNAA_OENOB RecName: Full=Chromosomal replication initiator protein DnaA gi|116090852|gb|ABJ56006.1| DNA replication ATPase initiation [Oenococcus oeni PSU-1] gi|290480719|gb|EFD89353.1| hypothetical protein AWRIB429_0001 [Oenococcus oeni AWRIB429] Length = 450 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 133/346 (38%), Positives = 199/346 (57%), Gaps = 12/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F T++ G +N +A +AA +++E Y NPL I+ S GLGKTHL++AI Sbjct: 114 LNQNFTFDTWVIGDANELATSAAMAVSEQPGRQY-----NPLLIYGSSGLGKTHLMEAIG 168 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + QP+ V Y+T + FM + +AI + + N+DLLL+DD+Q LQGK Sbjct: 169 NRLKELQPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQMLQGKDRF 228 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF ++ N + S KQ+V +D P ++ L+ R+ SR GV+ + D+ R +IL Sbjct: 229 QEEFFNIFNKITKSQKQIVMTSDVLPKDIPGLNARLVSRFMQGVAYDIQKPDFPTRLAIL 288 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 KN+ E+ ++I+ + L +A + T+ REL+GAFN L + A ++ Sbjct: 289 KNK-----SEEVGISIDNQTLTLIAEQIDTNVRELEGAFNTLTLMARAGRPINVSNAQKI 343 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L HL N K + + DIQ+ VA YN+S NDL+ +R +V PRQVAMYL + +T S Sbjct: 344 LEHL-NITRQKVITLPDIQKTVADDYNVSINDLIGKKRNSDIVLPRQVAMYLIRTLTDTS 402 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P+IG+ FG RDHTTV+H K+ ++ETD LK+ +E L I E Sbjct: 403 LPKIGQAFGGRDHTTVMHGTEKIADLIETDYALKQRIENLSTKIKE 448 >gi|262371173|ref|ZP_06064494.1| chromosomal replication initiator protein dnaA [Acinetobacter johnsonii SH046] gi|262313903|gb|EEY94949.1| chromosomal replication initiator protein dnaA [Acinetobacter johnsonii SH046] Length = 459 Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 265/477 (55%), Gaps = 35/477 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+ W + L L++ + L P + +I+ +LE IT L Sbjct: 2 LWTDCLTRLRQELSGNVFTMWIRPLVAEE-LNDTLRLYAPNPYWTRYIQEHHLELITILV 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ R++ VEILV S L + E+ A++ + + +P +P++ K+ Sbjct: 61 EQLSEGRVRKVEILVDSRPGAILSASEQPATTTAALESAP-------APVVRPKKEKEE- 112 Query: 154 FGSPLDSR-------FVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASV 205 G+ +SR F FS F+EG SN++A T + + ++ + + NPLF++ Sbjct: 113 -GNSKNSRKRQLNPLFSFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPT 166 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QA+ NA ++ +PN RV+Y+TAE F+ F S+++ K + R++DLLL+ Sbjct: 167 GLGKTHLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQQGKVEEFKKNCRSLDLLLV 226 Query: 266 DDMQFLQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 227 DDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGV 286 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R IL + + E + + + +A+ V + REL+GA N++V F Sbjct: 287 EPPDIETRIEIL-----LKKAESNDVELPRNCALFIAQQVVANVRELEGALNKVVAISRF 341 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + ++ E L ++ + + E+IQR+V++++ I +L+ +R R RPRQ Sbjct: 342 KGTAIDLDVVRESLKDVLAI-RARTISTENIQRVVSEYFRIPLKELVGPKRTRIYARPRQ 400 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +AM L++ +T SFPEIG FG RDH+TV+HA KV + + D ++ + L+RL+ Sbjct: 401 LAMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVLSLRDEDPIFNEDYKNLQRLL 457 >gi|253995375|ref|YP_003047439.1| chromosomal replication initiator protein DnaA [Methylotenera mobilis JLW8] gi|253982054|gb|ACT46912.1| chromosomal replication initiator protein DnaA [Methylotenera mobilis JLW8] Length = 472 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 153/483 (31%), Positives = 255/483 (52%), Gaps = 28/483 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S+ + ++ + +W + L+ V + V + P F+ W+K+R+L+ I + Sbjct: 2 ENFWPACLSKFQKELSAQQFNTWIKPLQ-TEVNGDAVRIFAPNRFVMQWVKDRFLKKIEQ 60 Query: 96 LFQEEHSRIQGVEILVRSVALPS----VEKTASSPSITKL-------SPINTNISKSPII 144 +E +Q +L + A P+ V+K A + KL I N+++ Sbjct: 61 FAEEHQPDLQIELVLGDATAKPAPAEPVKKVAKTVLEAKLPAEEIRSESIKQNLTEVLAK 120 Query: 145 LGKQTISPVFG---SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 K S V S L+ F F+ ++ G +N++A AA +AE Y NPLFI Sbjct: 121 TKKTAASAVKKTDTSNLNPTFNFNNYVTGRANQLARAAAIQVAENPGSAY-----NPLFI 175 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHLLQAI N P+ ++ YL AE ++ A K ++D Sbjct: 176 YGGVGLGKTHLLQAIGNELRLHNPDAKIRYLHAERYVSDVVKAYEHKAFDEFKRQYHSLD 235 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF K Q EF + NSL+++ KQ+V D P E+ +D R+R+R G+ Sbjct: 236 LLLIDDIQFFAKKTRTQEEFFYAFNSLIEAKKQIVITCDTYPKEIADVDERLRTRFSWGL 295 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + + E LN+ E+V +A+ + +S REL+GA N+++ Sbjct: 296 TVAVEPPELEMRVAIL-----LKKAEAVNLNLPEDVAFFIAKQIRSSVRELEGALNRIIA 350 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F + +A + L L+ +++ +E+IQ+ VA +Y I ++ S +R R Sbjct: 351 MSKFTGHAIDVHLAKDALRDLIAV-RGRQVTMENIQKTVADYYKIKVAEMYSKKRTRNFA 409 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM LS+ +T SFPEIG FG R HTTV+HA +++++ + D T+ +++ L ++ Sbjct: 410 RPRQIAMALSRELTNHSFPEIGEAFGGRHHTTVMHACDEIDQLRQNDATIARDIGFLVQV 469 Query: 500 ISE 502 I + Sbjct: 470 IRD 472 >gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein [Eubacterium rectale ATCC 33656] gi|238874105|gb|ACR73812.1| chromosomal replication initiation protein [Eubacterium rectale ATCC 33656] Length = 453 Score = 243 bits (620), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 256/458 (55%), Gaps = 43/458 (9%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLK-AWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 + +W + L+ ++ N +++ VP+ + ++I +Y + E + G+E ++ Sbjct: 26 FNTWIKPLEVFAIDGNTLYILVPSEQMGLSYINKKYYLPLKVAIGE----VTGIEYDIQF 81 Query: 114 VALPSVE-----KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 + LP K +P + + +P+ + S L+ + F TF+ Sbjct: 82 I-LPDQAQSLKFKNNDTPQLEQQTPVKGDHSN-----------------LNPNYTFDTFV 123 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G++NR A +A+ ++AE Y NPL+I+ GLGKTHL+ +I + I + P+ + Sbjct: 124 VGNNNRFAHSASLAVAESPGEAY-----NPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTK 178 Query: 229 VVYLTAEYFMWRFASAIRD---NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 V+Y+T+E F +IR+ + +D R +D+L+IDD+QF+ GK Q EF H Sbjct: 179 VLYVTSEEFTNEVIESIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTF 238 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L KQ++ +D+PP E+E+L+ RIRSR + G+ +G DYE R +IL+ + Sbjct: 239 NTLQTQGKQIILTSDKPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKK----- 293 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNT 403 E +I++++L ++A ++++ REL+GA N+L+ H+ +T +IA+ LS+++ Sbjct: 294 AETDNFDIDDDILNYIASNISSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITP 353 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + +++ + I +V++H++IS + ++S R + RPRQ+AMYL K MT S IG+ Sbjct: 354 DKPREITAQLIIEVVSEHFHISVDQMISKTRSSEIARPRQIAMYLCKTMTSDSLDVIGQL 413 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDH+T++H ++KV K E + + + +E +K+ I+ Sbjct: 414 LGGRDHSTIIHGIKKVTKDYEENDSTRTLIETIKKKIN 451 >gi|256003888|ref|ZP_05428875.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum DSM 2360] gi|255992226|gb|EEU02321.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum DSM 2360] gi|316939067|gb|ADU73101.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum DSM 1313] Length = 443 Score = 243 bits (619), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 153/461 (33%), Positives = 253/461 (54%), Gaps = 46/461 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LKN++ + +W + + S+ N ++L+VP F K +++RY I Sbjct: 16 LKNELTEISFNTWIKTIDPLSLTGNTINLAVPAEFNKGILESRYQTLIKNA--------- 66 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT------ISPVFGSPLD 159 ++ V E I + P N++K L KQT SP+ S L+ Sbjct: 67 -----IKQVTFKEYE-------IAFIVPSQENLNK----LTKQTESAGNEDSPL--SVLN 108 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++ F TF+ G+SNR A AA ++AE Y NPLFI+ VGLGKTHL+ AI + Sbjct: 109 PKYTFDTFVIGNSNRFAHAAALAVAEAPGKAY-----NPLFIYGGVGLGKTHLMHAIGHY 163 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 +++ + RV+Y+++E F +AI+DN + RNID+LLIDD+QF+ GK + Sbjct: 164 ILEQNSSQRVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQFIAGKERTEE 223 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L ++ KQ++ ++D+PP E+ SL+ R+RSR + G+ + D E R +IL+ Sbjct: 224 EFFHTFNALYEANKQIILSSDKPPKEI-SLEDRLRSRFEWGLIADMQAPDLETRIAILRK 282 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELL 397 + + L + EV++ +A + ++ REL+GA N+++ S +T E+A E L Sbjct: 283 KAQLEN-----LTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEITVELASEAL 337 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 +++ + K + IQ VA++++I + S +R R + PRQ+AMYL + +T S Sbjct: 338 KDILSANKAKVLNCTTIQEAVARYFDIRPEEFKSKKRTRDIAFPRQIAMYLCRELTEMSL 397 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 P+IG FG RDHTTV+HA K+ + +E++ ++ V +KR Sbjct: 398 PKIGEEFGGRDHTTVIHACEKISEEIESNSETRRAVSEIKR 438 >gi|291561644|emb|CBL40443.1| chromosomal replication initiator protein DnaA [butyrate-producing bacterium SS3/4] Length = 454 Score = 243 bits (619), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 148/457 (32%), Positives = 256/457 (56%), Gaps = 41/457 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ-GVEILVRS 113 Y +W L SV +I+ + VP + +++K +Y E + K+ EE + Q ++ ++S Sbjct: 27 YRTWLLPLIPDSVDKDILTILVPDSAFISYVKKKY-EFLLKITIEEITGFQCELDFKLKS 85 Query: 114 -VALPSVEK---TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 V P E ++ ++++L+ N N L+ R+ F TF+ Sbjct: 86 DVKEPEKENRLINVTNNTVSQLALQNAN--------------------LNPRYTFDTFVV 125 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G +N +A A+ ++AE Y NPLFI+ VGLGKTHL+ ++A+ +K P+ ++ Sbjct: 126 GKNNNLAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSVAHFILKNNPSAKI 180 Query: 230 VYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +Y+T+E F AIR+ ++ RN D+LLIDD+QF+ GK Q EF H N Sbjct: 181 LYVTSEKFTNELIDAIRNKNNVSTTEFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFN 240 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L ++ KQ++ ++DRPP E+E+L+ R+RSR + G++V + DYE R +IL+ + + Sbjct: 241 ALYEAKKQIIISSDRPPREIETLEDRLRSRFEWGLTVDIQPPDYETRMAILRKK-----E 295 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTG 404 E NI+ E++ ++A V ++ REL+GA ++V + E+A+E L L++ Sbjct: 296 ELEGYNIDNEIIKYIATNVKSNIRELEGALTKIVASSKLNNKEINLELAEEALKDLISPN 355 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ + I +V++H+ I+ DL+ +R + +V PRQ+ MYL MT S IG+ Sbjct: 356 AAREVTPQLIINVVSEHFGITPLDLIGQKRSKELVFPRQIVMYLCGDMTSESLQNIGKAL 415 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDHTT++H +K+ L+TD LK +++LK+ I+ Sbjct: 416 GGRDHTTIIHGTKKIASELKTDENLKNTIDILKKKIN 452 >gi|291294405|ref|YP_003505803.1| chromosomal replication initiator protein DnaA [Meiothermus ruber DSM 1279] gi|290469364|gb|ADD26783.1| chromosomal replication initiator protein DnaA [Meiothermus ruber DSM 1279] Length = 439 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 146/439 (33%), Positives = 251/439 (57%), Gaps = 34/439 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +WF++++ V++ + L VPT+F K WI++ Y E +T+ ++ E+ V Sbjct: 23 YHTWFEKIQPLGVVNGSLELGVPTSFFKGWIEDHYAELLTEALARLGAQAPRFELKV--- 79 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 +P P+ +I + Q + L+ +++F F+ G +N Sbjct: 80 -IPG-------------KPVQEDIFSASTPNKPQEAR----ARLNPKYIFENFVVGQNNN 121 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A AA ++AE + Y NPLFI+ VGLGKTHL+ A+ ++ +R P+ ++ Y++ Sbjct: 122 LAHAAAVAVAESPGNAY-----NPLFIYGGVGLGKTHLMHAVGHSVAQRFPDKKIEYVST 176 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F +AIR++ +D R++DLLL+DD+QF+ GK Q EF H N+L ++ KQ Sbjct: 177 ETFTNELINAIREDRMSEFRDRYRSVDLLLVDDIQFIAGKERTQEEFFHTFNALYEARKQ 236 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP ++ +L+ R+RSR + G+ + D E R +ILK E + + Sbjct: 237 IILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRVAILK-----MNSEYRNMRVP 291 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIE 412 EEVL ++AR +T++ REL+GA +++ S + L+ +A + LS + E+ + E Sbjct: 292 EEVLEYIARQITSNIRELEGALMRVIAYASLNGVQLSKAVAIKALSDVFAATESG-LAPE 350 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +I + VA+HYN+ ++ R + VV PRQ+AMYL + MT S PEIG+ F RDHTTV Sbjct: 351 EILKAVAEHYNLRPEEIRGAGRRKEVVIPRQIAMYLIREMTHASLPEIGQFFDGRDHTTV 410 Query: 473 LHAVRKVEKMLETDITLKK 491 L+A++K+++ L+T+ L++ Sbjct: 411 LYAIQKIQESLDTEPNLQQ 429 >gi|146305043|ref|YP_001185508.1| chromosomal replication initiation protein [Pseudomonas mendocina ymp] gi|145573244|gb|ABP82776.1| chromosomal replication initiator protein DnaA [Pseudomonas mendocina ymp] Length = 494 Score = 243 bits (619), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 136/348 (39%), Positives = 209/348 (60%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 157 SYLNRTFTFDNFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 211 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N + + PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 212 VGNHLLAKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFAKKE 271 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 272 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 331 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+ + + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 332 IL-----MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 386 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + I++IQR A++Y I +DLLS RR R++ RPRQVAM LSK +T Sbjct: 387 RESLKDLLAL-QDKLVSIDNIQRTTAEYYKIKISDLLSKRRSRSIARPRQVAMALSKELT 445 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 446 NHSLPEIGVAFGGRDHTTVLHACRKIAELRESDADIREDYKNLLRTLT 493 >gi|269137359|ref|YP_003294059.1| DNA replication initiation ATPase [Edwardsiella tarda EIB202] gi|267983019|gb|ACY82848.1| ATPase involved in DNA replication initiation [Edwardsiella tarda EIB202] gi|304557460|gb|ADM40124.1| Chromosomal replication initiator protein dnaA [Edwardsiella tarda FL6-60] Length = 440 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 153/439 (34%), Positives = 245/439 (55%), Gaps = 19/439 (4%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRSVALPSVEKTASSP 126 N + L P F+ W++++YL I L F + + E+ + VA +V ASS Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDAPVLRFEVGSKPVAPAAVSSAASSG 72 Query: 127 SITKLSPINTNISKSPIILGKQTISP--VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 + + T+ P + T P + S ++ + F F+EG SN++A AA+ +A Sbjct: 73 VSVAPAAVRTSSPARPS-WERVTAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVA 131 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ A Sbjct: 132 DNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKA 186 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P Sbjct: 187 LQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPK 246 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+ ++ R++SR G++V + + E R +IL + + ++ + + EV +A+ Sbjct: 247 EINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKR 301 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA++Y Sbjct: 302 LRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYY 360 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ Sbjct: 361 KIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQL 420 Query: 483 LETDITLKKEVELLKRLIS 501 E +K++ L R +S Sbjct: 421 REESHDIKEDFSNLIRTLS 439 >gi|83642915|ref|YP_431350.1| chromosomal replication initiation protein [Hahella chejuensis KCTC 2396] gi|123767560|sp|Q2SQZ9|DNAA_HAHCH RecName: Full=Chromosomal replication initiator protein DnaA gi|83630958|gb|ABC26925.1| chromosomal replication initiator protein DnaA [Hahella chejuensis KCTC 2396] Length = 467 Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 152/469 (32%), Positives = 257/469 (54%), Gaps = 28/469 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS-RI 104 L++++ + +W + L+ ++ L P F+ W+ +Y+ I ++ E S + Sbjct: 13 LEDELPAQQFNTWLRPLQAKGSEEELL-LFAPNRFVLDWVNEKYIGRINEILSELTSQKA 71 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQTISPVFG---- 155 + + + S+ S + AS S + T P+I G++ ++ V G Sbjct: 72 PRISLKIGSITGNSKGQQASKDS--AVGATRTTAPSRPVIADVAPSGERNVT-VEGAIKH 128 Query: 156 -SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F TF+EG SN++A AA +A+ Y NPLF++ VGLGKTHL+Q Sbjct: 129 ESYLNPTFTFETFVEGKSNQLARAAAMQVADNPGSAY-----NPLFLYGGVGLGKTHLMQ 183 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA K+ PN +++YL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 184 AVGNAIFKKNPNAKILYLHSERFVADMVKALQLNAFNEFKRLYRSVDALLIDDIQFFARK 243 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ DR P E++ ++ R++SR G++V + + E R Sbjct: 244 ERSQEEFFHTFNALLEGGQQMILTCDRYPKEIDHMEERLKSRFGWGLTVMVEPPELETRV 303 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + E ++++ E +A+ + ++ REL+GA ++ F +T Sbjct: 304 AIL-----MKKAEQANVHLSSESAFFIAQKIRSNVRELEGALKLVIANAHFTGQEITPAF 358 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K++ I++IQR VA++Y I D+LS RR R++ RPRQ+AM L+K + Sbjct: 359 IRECLKDLLALHE-KQVSIDNIQRTVAEYYKIRIADILSKRRTRSITRPRQMAMALAKEL 417 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA + + ++ ++D TL+ + + R+++ Sbjct: 418 TNHSLPEIGEAFGGRDHTTVLHACKVMIELQQSDPTLRDDYQNFMRMLT 466 >gi|291529189|emb|CBK94775.1| chromosomal replication initiator protein DnaA [Eubacterium rectale M104/1] Length = 453 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 255/458 (55%), Gaps = 43/458 (9%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLK-AWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 + +W + L+ ++ N +++ VP+ + ++I +Y + E + G+E ++ Sbjct: 26 FNTWIKPLEVFAIDGNTLYILVPSEQMGLSYINKKYYLPLKVAIGE----VTGIEYDIQF 81 Query: 114 VALPSVE-----KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 + LP K +P + +P+ + S L+ + F TF+ Sbjct: 82 I-LPDQAQSLKFKNNDTPQLEPQTPVKGDHSN-----------------LNPNYTFDTFV 123 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G++NR A +A+ ++AE Y NPL+I+ GLGKTHL+ +I + I + P+ + Sbjct: 124 VGNNNRFAHSASLAVAESPGEAY-----NPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTK 178 Query: 229 VVYLTAEYFMWRFASAIRD---NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 V+Y+T+E F +IR+ + +D R +D+L+IDD+QF+ GK Q EF H Sbjct: 179 VLYVTSEEFTNEVIESIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTF 238 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L KQ++ +D+PP E+E+L+ RIRSR + G+ +G DYE R +IL+ + Sbjct: 239 NTLQTQGKQIILTSDKPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKK----- 293 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNT 403 E +I++++L ++A ++++ REL+GA N+L+ H+ +T +IA+ LS+++ Sbjct: 294 AETDNFDIDDDILNYIASNISSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITP 353 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + +++ + I +V++H++IS + ++S R + RPRQ+AMYL K MT S IG+ Sbjct: 354 DKPREITAQLIIEVVSEHFHISVDQMISKTRSSEIARPRQIAMYLCKTMTSDSLDVIGQL 413 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDH+T++H ++KV K E + + + +E +K+ I+ Sbjct: 414 LGGRDHSTIIHGIKKVTKDYEENDSTRTLIETIKKKIN 451 >gi|291526546|emb|CBK92133.1| chromosomal replication initiator protein DnaA [Eubacterium rectale DSM 17629] Length = 453 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 255/458 (55%), Gaps = 43/458 (9%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLK-AWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 + +W + L+ ++ N +++ VP+ + ++I +Y + E + G+E ++ Sbjct: 26 FNTWIKPLEVFAIDGNTLYILVPSEQMGLSYINKKYYLPLKVAIGE----VTGIEYDIQF 81 Query: 114 VALPSVE-----KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 + LP K +P + +P+ + S L+ + F TF+ Sbjct: 82 I-LPDQAQSLKFKNNDTPQLEPQTPVKGDHSN-----------------LNPNYTFDTFV 123 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G++NR A +A+ ++AE Y NPL+I+ GLGKTHL+ +I + I + P+ + Sbjct: 124 VGNNNRFAHSASLAVAESPGEAY-----NPLYIYGGPGLGKTHLMHSIGHFIIDQNPDTK 178 Query: 229 VVYLTAEYFMWRFASAIRD---NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 V+Y+T+E F +IR+ + +D R +D+L+IDD+QF+ GK Q EF H Sbjct: 179 VLYVTSEEFTNEVIESIRNGNSSAMTKFRDKYRTVDVLMIDDIQFIIGKESTQEEFFHTF 238 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L KQ++ +D+PP E+E+L+ RIRSR + G+ +G DYE R +IL+ + Sbjct: 239 NTLQTQGKQIILTSDKPPKEMETLEERIRSRFEWGLMADIGTPDYETRMAILRKK----- 293 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNT 403 E +I++++L ++A ++++ REL+GA N+L+ H+ +T +IA+ LS+++ Sbjct: 294 AETDNFDIDDDILNYIASNISSNIRELEGALNKLLAFHNLEHTHITMDIAERELSNIITP 353 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + +++ + I +V++H++IS + ++S R + RPRQ+AMYL K MT S IG+ Sbjct: 354 DKPREITAQLIIEVVSEHFHISVDQMISKTRSSDIARPRQIAMYLCKTMTSDSLDVIGQL 413 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDH+T++H ++KV K E + + + +E +K+ I+ Sbjct: 414 LGGRDHSTIIHGIKKVTKDYEENDSTRTLIETIKKKIN 451 >gi|295095340|emb|CBK84430.1| chromosomal replication initiator protein DnaA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 441 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 147/441 (33%), Positives = 234/441 (53%), Gaps = 22/441 (4%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT 129 N + L P F+ W++++YL I L + L V V +T Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLNDFCG--SDAPQLRFEVGTKPVTQTVREVVNV 70 Query: 130 KLSPINTNISKSPIILGKQT-------ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 + +Q P + S ++ + F F+EG SN++A AA+ Sbjct: 71 AAPAQAAPAPAPRVAPARQGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQ 130 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 131 VADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMV 185 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 186 KALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRY 245 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV +A Sbjct: 246 PKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIA 300 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA+ Sbjct: 301 KRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAE 359 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 +Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E Sbjct: 360 YYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIE 419 Query: 481 KMLETDITLKKEVELLKRLIS 501 ++ E +K++ L R +S Sbjct: 420 QLREESHDIKEDFSNLIRTLS 440 >gi|332798024|ref|YP_004459523.1| chromosomal replication initiator protein dnaA [Tepidanaerobacter sp. Re1] gi|332695759|gb|AEE90216.1| Chromosomal replication initiator protein dnaA [Tepidanaerobacter sp. Re1] Length = 453 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 153/468 (32%), Positives = 256/468 (54%), Gaps = 30/468 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + I+S+ L N + + + + + ++ + + VP +F+K+ I+ RYL I Sbjct: 10 QHVLKILSNELNNDMS---FNTVLKPTRLAALEADTAIVEVPNDFIKSVIEKRYLNLIKD 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 +F + V I V S S S+ ++S T L + T +P Sbjct: 67 IFSSVLKQNINVVINVNPEGFGSEVLPDDSISLNEVSETKT--------LAEDT-TP--- 114 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ ++ F TF+ G+SNR A A+Q++A+ + Y NP FI+ VGLGKTHL+ A Sbjct: 115 -SLNQKYTFDTFVVGNSNRFAHAASQAVAQAPAKAY-----NPFFIYGGVGLGKTHLMHA 168 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + +++ P +VVYL++E F ++IRD+ + ++ R ID+LLIDD+QF+ GK Sbjct: 169 IGHYILQQDPTCKVVYLSSEKFTNELINSIRDDKNVEFRNKYRTIDVLLIDDIQFIAGKE 228 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L D+ KQ+V ++DRPP E+ +L+ R+RSR + G+ + D+E R + Sbjct: 229 RTQEEFFHTFNALHDANKQLVISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDFETRIA 288 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEI 392 IL+ + + L + +V+ +A + T+ REL+GA ++V S PI + Sbjct: 289 ILQKKAMMEN-----LIVPNDVINFIATKIETNIRELEGALIRVVAYSSLTDCPIDIG-L 342 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+++L ++ G+ K++ + I V +++IS + S +R + + RQVAMYL + Sbjct: 343 AEQVLKDILPDGKPKQVTSKQIVEEVGSYFSISPEEFKSKKRTKDLAFARQVAMYLCCEL 402 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG FG RDHTTV+HA K+ + ++ D L VE LK+ I Sbjct: 403 TDLSLPKIGEEFGGRDHTTVIHARDKITRDIQEDSQLSNAVESLKKKI 450 >gi|125974856|ref|YP_001038766.1| chromosomal replication initiation protein [Clostridium thermocellum ATCC 27405] gi|166201880|sp|A3DHZ4|DNAA_CLOTH RecName: Full=Chromosomal replication initiator protein DnaA gi|125715081|gb|ABN53573.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum ATCC 27405] Length = 443 Score = 241 bits (616), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 152/461 (32%), Positives = 253/461 (54%), Gaps = 46/461 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LKN++ + +W + + S+ N ++L+VP F K +++RY I Sbjct: 16 LKNELTEISFNTWIKTIDPLSLTGNTINLAVPAEFNKGILESRYQTLIKNA--------- 66 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT------ISPVFGSPLD 159 ++ V E I + P N++K L KQT SP+ S L+ Sbjct: 67 -----IKQVTFKEYE-------IAFIVPSQENLNK----LTKQTESAGNEDSPL--SVLN 108 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++ F TF+ G+SNR A AA ++AE Y NPLFI+ VGLGKTHL+ AI + Sbjct: 109 PKYTFDTFVIGNSNRFAHAAALAVAEAPGKAY-----NPLFIYGGVGLGKTHLMHAIGHY 163 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 +++ + +V+Y+++E F +AI+DN + RNID+LLIDD+QF+ GK + Sbjct: 164 ILEQNSSQKVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQFIAGKERTEE 223 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L ++ KQ++ ++D+PP E+ SL+ R+RSR + G+ + D E R +IL+ Sbjct: 224 EFFHTFNALYEANKQIILSSDKPPKEI-SLEDRLRSRFEWGLIADMQAPDLETRIAILRK 282 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELL 397 + + L + EV++ +A + ++ REL+GA N+++ S +T E+A E L Sbjct: 283 KAQLEN-----LTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEITVELASEAL 337 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 +++ + K + IQ VA++++I + S +R R + PRQ+AMYL + +T S Sbjct: 338 KDILSANKAKVLNCTTIQEAVARYFDIRPEEFKSKKRTRDIAFPRQIAMYLCRELTEMSL 397 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 P+IG FG RDHTTV+HA K+ + +E++ ++ V +KR Sbjct: 398 PKIGEEFGGRDHTTVIHACEKISEEIESNSETRRAVSEIKR 438 >gi|291612473|ref|YP_003522630.1| chromosomal replication initiator protein DnaA [Sideroxydans lithotrophicus ES-1] gi|291582585|gb|ADE10243.1| chromosomal replication initiator protein DnaA [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 165/477 (34%), Positives = 248/477 (51%), Gaps = 34/477 (7%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 + + L +C S F K Q+ Y SW + L F +V L+ P +F + Sbjct: 1 MSSQSLSGSCLSFF-------KEQLPLQQYNSWIKPLIFEIDGEKLV-LTAPNSFTLRIV 52 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 + R+L I+K S +E VEK S S+ ++ +K P+ Sbjct: 53 QERFLPEISKRALPFFSSPPKIEF--------RVEKRGSKVSMDHTK--DSTSTKPPLPA 102 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 K + + L+S VF TF+ G +N++A AA +AE Y NPLFI+ V Sbjct: 103 AKTAKN---QNKLNSALVFDTFVTGKANQLAHAAAIQVAETPGVAY-----NPLFIYGGV 154 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLLQAI N K+ P R+ Y+ A ++ A + K ++DLLLI Sbjct: 155 GLGKTHLLQAIGNLVSKKNPQARICYIHATNYISGVVRAFQTKNFDEFKQFYNSLDLLLI 214 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ K Q EF + LNSL+D+ KQVV D P E+ ++PR+ SR G++V + Sbjct: 215 DDIQFIADKPGTQQEFFYTLNSLIDTNKQVVITCDTFPKEITGIEPRLTSRFTCGLTVAI 274 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 EMR +IL + A + I+E+V +A+ V ++ REL+GA N++ F Sbjct: 275 EPPGLEMRVAILLQKSATNGSP-----ISEDVAFFIAKHVRSNIRELEGALNRIEAYARF 329 Query: 385 AP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 I++ E+A E L L+ + K++ +E+IQ+ VA Y I DLLS +R R + RPRQ Sbjct: 330 HKRIISIELAKEALKDLL-AAQNKQVSLENIQKTVADFYRIKIVDLLSKKRTRIIARPRQ 388 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +AM L++ +T S PEIG FG RDH+TVLHA + +E + +D L + LL + + Sbjct: 389 IAMCLARELTQLSLPEIGNAFGGRDHSTVLHACKTIESLRNSDSALNADFNLLNQTL 445 >gi|110639382|ref|YP_679591.1| chromosomal replication initiation protein [Cytophaga hutchinsonii ATCC 33406] gi|110282063|gb|ABG60249.1| chromosomal replication initiator protein DnaA [Cytophaga hutchinsonii ATCC 33406] Length = 471 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/478 (31%), Positives = 267/478 (55%), Gaps = 29/478 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 +C+S++ ++ VG + +WF+ ++ +++N++ + VP+ F W++ Y+ + Sbjct: 6 DCKSVWNSCLEYIRQCVGDQSFKTWFEPVEPLMLVNNVLTIQVPSQFFYEWLEEHYVHVL 65 Query: 94 TKLFQEE---HSRIQGVEILVRSVAL--PSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 K E+ R++ +ILV L S T SI S IN +SK KQ Sbjct: 66 RKAIDEQLGPDGRLE-YQILVDKNDLNRKSYGTTLHKGSIISRS-INPGVSKET----KQ 119 Query: 149 TISPVFGSPLDSR----FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + P P+DS+ + F TFIEG N++A +A ++A + G T+ NPL ++ + Sbjct: 120 EV-PAVSQPIDSQLNASYSFDTFIEGDCNKLARSAGLAVA--NKPGVTS--FNPLLVYGN 174 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QAI N K + +V+Y+ +E F+ +F A+++N + + +D+L+ Sbjct: 175 VGLGKTHLVQAIGNQIKKNHADKKVLYMPSERFLSQFIEAMKNNQSQEFTNQFLGLDVLI 234 Query: 265 IDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QFL GK E F H+ N L S KQ++ +D P +++ L R+ SR + G+S Sbjct: 235 LDDVQFLSGKEKTQEIFFHIFNHLHQSGKQIIITSDCAPKDIKGLQERLLSRFKWGLSAD 294 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 L + DYE R +I+ ++ E I +V+ ++A +V T+ R+L+G N L+ +H+ Sbjct: 295 LQVPDYETRNAIICKKMQFEGIE-----IAADVIDYLAYSVDTNMRDLEGVVNSLIAQHT 349 Query: 384 FAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + + E+A +++ ++V ET ++ I+ IQ+ V++++ ++ + R R +V R Sbjct: 350 LSGRQIDLELAKQIIQNIVQNVET-EVNIDYIQKFVSEYFAVTIEQMKDKTRKREIVIAR 408 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRL 499 QVAMY +K T S IG FG RDH+TV+HA+ V +++TD + ++ L+K++ Sbjct: 409 QVAMYFTKEYTNMSLKSIGNHFGGRDHSTVIHALTSVSDLMDTDKKFRATMQDLIKKI 466 >gi|258590834|emb|CBE67129.1| Chromosomal replication initiator protein dnaA [NC10 bacterium 'Dutch sediment'] Length = 452 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 154/472 (32%), Positives = 255/472 (54%), Gaps = 31/472 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V + I+ + ++ +V + +WF+ L S+ + V + +P F K W ++ YL+ Sbjct: 8 VRADEIWKEALATIQGKVARQSFDNWFRPLALESLEGSCVTVRLPNQFFKEWFEDHYLDV 67 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTAS-SPSITKLSPINTNISKSPIILGKQTIS 151 + +F + V +++R VA P + P P+ +++ I Sbjct: 68 LKSVFTD--LMFTSVNVILR-VAEPVGQGEPDVRPEPAARRPVKRYRNEAAI-------- 116 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F F+ GSS++ A ++AE S Y NPLFI+ VGLGKTH Sbjct: 117 ------LNPKYTFENFVVGSSSQFAHAGCLAVAEQLSKAY-----NPLFIYGGVGLGKTH 165 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI + +KR L++ Y+++E F +AIR + ++ R++DLLLIDD+QF+ Sbjct: 166 LLHAIGHLVLKRNARLKLSYVSSEKFTNDLINAIRFDSTGEFRNRYRSLDLLLIDDIQFI 225 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N L DS+KQ+V ++D P E+ +L+ R+RSR + G+ + D E Sbjct: 226 AGKERTQEEFFHTFNELYDSSKQIVISSDSLPREIPTLEERLRSRFEWGLIADIQPPDLE 285 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 + +I++ + +Q E +L ++V + +A+ V ++ REL+G+ +LV S ++ Sbjct: 286 TKAAIIRKK---AQAEGVRLP--DDVSLFIAKNVQSNIRELEGSLVRLVAYASMTGREIS 340 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A E L L N K + + IQ+ VA+ Y + DL S R VV PRQVAMYLS Sbjct: 341 LELAQETLKEL-NAERAKVITLTAIQQTVAEFYRVKVEDLKSKERNWGVVLPRQVAMYLS 399 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P IG FG +DHTTV+H+ K+++ L TD ++++E L + I+ Sbjct: 400 RTLTASSLPVIGEAFGGKDHTTVIHSCDKIKRRLTTDEAFRRQIESLSQAIT 451 >gi|78484347|ref|YP_390272.1| chromosomal replication initiator protein DnaA [Thiomicrospira crunogena XCL-2] gi|123728109|sp|Q31JS5|DNAA_THICR RecName: Full=Chromosomal replication initiator protein DnaA gi|78362633|gb|ABB40598.1| chromosomal replication initiator protein DnaA [Thiomicrospira crunogena XCL-2] Length = 467 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 137/346 (39%), Positives = 211/346 (60%), Gaps = 13/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++ F F TF+EG +N++A AA+ +A+ Y NP FI+ VGLGKTHL+ AI Sbjct: 132 LNTNFTFDTFVEGKANQLAAAAARQVADNPGGSY-----NPFFIYGGVGLGKTHLMHAIG 186 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N ++R PN RVVYL +E F+ +A+R N K R++D LLIDD+QF K Sbjct: 187 NELMRRDPNARVVYLHSERFVADMVNALRHNKIDEFKRFYRSLDALLIDDIQFFAKKEQS 246 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+LL+ KQV+ +DR P E++ L+ R++SR G+++ + ++EMR +IL Sbjct: 247 QEEFFHTFNTLLEGNKQVILTSDRFPKEVDGLEDRLKSRFGWGLTIAVEPPEFEMRVAIL 306 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 + A + + +EV +A+ + + R+L+GA ++ F ++T ++A + Sbjct: 307 MKKAA-----EFGFLLPDEVAFFIAKRLRGNVRDLEGALKRVGAFAQFTQQLVTVDLAKD 361 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + K + +E+IQ+ VA +Y I DLLS RR R + RPRQ++M +SK +T Sbjct: 362 ALKDLLAL-QQKMVTLENIQKTVADYYKIRVADLLSKRRTRNIARPRQMSMAISKELTSH 420 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHAVRK+ ++ ETD ++++ L R+I+ Sbjct: 421 SLPEIGDAFGGRDHTTVLHAVRKINELKETDHRIEEDFNSLIRIIT 466 >gi|256370825|ref|YP_003108649.1| chromosomal replication initiator protein DnaA [Acidimicrobium ferrooxidans DSM 10331] gi|256007409|gb|ACU52976.1| chromosomal replication initiator protein DnaA [Acidimicrobium ferrooxidans DSM 10331] Length = 458 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 149/464 (32%), Positives = 245/464 (52%), Gaps = 22/464 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + ++ + VG + +WF+ L + + L+ P+ K ++ +Y + + Sbjct: 5 EASWEAIAQAFRTAVGEATWLTWFRTLAPQELSDQQIVLTTPSPLAKERLETKYRDVLED 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + V + VR+ TA S + + T ++ G+ + Sbjct: 65 VLTPIMGARVPVAVRVRADVPDETPTTAHSLFDSSPTSSPTPSRRN----GRGS-----S 115 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S D R+ F F+ GSSNR A AA S+AE + Y NPLFIH GLGKTHLL A Sbjct: 116 STFDPRYTFEAFVIGSSNRFAHAAALSVAETPARSY-----NPLFIHGDAGLGKTHLLHA 170 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + PNL Y++ E F+ F AI+ N K R D+LL+DD+QFL+GK Sbjct: 171 IGNYARENYPNLLTTYVSTETFLNEFVDAIKRNQTSEFKARYRACDILLVDDIQFLEGKE 230 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 IQ EF H N+L + KQ+V +DRPP L +L+ R+RSR G+ + D E R + Sbjct: 231 AIQEEFFHTFNTLYGAQKQIVLTSDRPPRALATLEDRLRSRFAMGLITDVQPPDLETRAA 290 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIA 393 IL+ + ED + + V+ +A ++T + REL+GA +L + + +T +A Sbjct: 291 ILRRK-----AEDAGVTVPATVIEFIAASITDNIRELEGALTRLAAFSTLSQTGITLTMA 345 Query: 394 DELLSHLVNTGETKKMRI-EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 +++LS L++ T++ R ++ A +N++ D+ R R V RQ+AMY+ + + Sbjct: 346 EQVLSDLISQHATQRQRTPAEVIAATAALFNLTPEDITGASRKRPVAVARQIAMYVVREL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 T S+PEIGR FG +DHTTV+HAV +V+++++ + + ++V+ L Sbjct: 406 TELSYPEIGRAFGGKDHTTVMHAVSRVQELMQESVEIYEQVDQL 449 >gi|1352278|sp|P29440|DNAA_SERMA RecName: Full=Chromosomal replication initiator protein DnaA gi|407186|gb|AAA02924.1|AAA02924 DnaA [Serratia marcescens] Length = 464 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 152/480 (31%), Positives = 257/480 (53%), Gaps = 35/480 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQE-----------EHSRIQGVEILVRSVALPSVEKTASSPSITKLS--PINTNISKSPI 143 + E +++ ++V A+ + T P N + P Sbjct: 63 LNDFCGTDAPLLRFEVGSKPITQVISQTVTASVSSAPAAPAARTAAPSRPSWDNAAAQPE 122 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + + ++P + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 123 LSYRSNVNP--------KHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYG 169 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 GLGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D L Sbjct: 170 GTGLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDAL 229 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 230 LIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTV 289 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ Sbjct: 290 AIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANA 344 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RP Sbjct: 345 NFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARP 403 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 404 RQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 463 >gi|290550|gb|AAA62053.1| dnaA (CG Site No. 851) [Escherichia coli] Length = 471 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 150/475 (31%), Positives = 255/475 (53%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 ---FQEEHSRIQGVEILVRSVA-LPSVEKTASSPSITKLSPINTNISKSPIILGKQTI-- 150 F + E+ + V P T++ + +++ + G + Sbjct: 67 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 126 Query: 151 --SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNXLLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+ P Q+AM Sbjct: 357 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSGXGPGQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|291457888|ref|ZP_06597278.1| DNA replication initiator protein, ATPase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419432|gb|EFE93151.1| DNA replication initiator protein, ATPase [Oribacterium sp. oral taxon 078 str. F0262] Length = 454 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 149/459 (32%), Positives = 253/459 (55%), Gaps = 37/459 (8%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 V P Y +W + L+ + + + P +I+ RY TI K+ EE I G+ Sbjct: 25 VMPVSYKTWLKPLELCDFIDGELIIIAPDQVFCQYIEKRY-STILKVSIEE---ISGISS 80 Query: 110 LVRSVALPSVEK--TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTF 167 +R + V A +T+ P IL K ++P R+ F +F Sbjct: 81 EIRLITAEEVRNYHKAGEKKLTE--------EDFPQILKKANLNP--------RYTFDSF 124 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 + GSSN +A A+ ++AE Y NPL+I+ GLGKTHL+Q+IA+ +K P Sbjct: 125 VVGSSNNLAHAASLAVAESPGEIY-----NPLYIYGGAGLGKTHLMQSIAHFILKSNPQS 179 Query: 228 RVVYLTAEYFMWRFASAIRDNCALN---LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHL 283 + Y+T+E F+ F +IR+ L+ + + R++D+LLIDD+QF+ GK Q EF H Sbjct: 180 NIRYVTSETFINEFVDSIRNKNNLSPAEFRKNYRDLDVLLIDDIQFIIGKEGTQEEFFHT 239 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L ++ +Q++ A+D+PP ++++L+ R+RSR + G+ V + + DYE R +IL+ + Sbjct: 240 FNTLYENKRQIIIASDKPPRDIDNLEDRLRSRFEVGLIVDIQMPDYETRMAILRKK---- 295 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVN 402 +E +I+ EV+ ++A + ++ REL+GA ++V +T E+A+ELL ++ Sbjct: 296 -EELEGYSIDNEVIKYIATNIKSNVRELEGALTKIVAMSRLEKKDVTLELAEELLKDHIS 354 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + K++ + I +VA+H+N++ DL S R+ + +V PRQ+AMYL + MT +G Sbjct: 355 SEAPKEVTAQLIISLVAEHFNLNDGDLSSQRKNKEIVLPRQIAMYLCREMTESPLKAVGE 414 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDHTT++H K+ L T+ LK +E L++ I+ Sbjct: 415 LLGGRDHTTIMHGHDKISTELRTNEQLKSTIEALRKKIA 453 >gi|289207188|ref|YP_003459254.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. K90mix] gi|288942819|gb|ADC70518.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. K90mix] Length = 455 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 248/472 (52%), Gaps = 21/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++T RL+ +V +W + L + L P F+ +++ L + Sbjct: 1 MTANTLWTACLDRLQGRVSEQQLNTWLRPLHAEEEA-GALRLLAPNQFVFEHVRDHLLSS 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + E + + + + E TA+ P + S + + K P Sbjct: 60 IEEAVSELRPGTEETDRQRVRLGIGGTEWTAAEPEGSAPSRAPASAPARRAAVPK---GP 116 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 V S L+ F F TF+EG SN++A A+ +AE Y NPLFI+ VGLGKTHL Sbjct: 117 V--SNLNPAFTFDTFVEGKSNQLARAASLQVAENPGVAY-----NPLFIYGGVGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI N+ + R P R++YL +E F+ A++ N + K R D LLIDD+QF Sbjct: 170 MHAIGNSILSRLPEGRIIYLHSERFVADMIKALQHNAIDDFKQHYRTADALLIDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+E L+ R++SR G+++ + + E Sbjct: 230 NKERSQEEFFHTFNALLEGQQQIILTSDRYPKEVEGLEERLKSRFGWGLTIAIEPPELET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ + E + + EV + + + ++ REL+G+ +++ F PI T Sbjct: 290 RVAILQRK-----AEQAGIELPTEVAFFMGKRIRSNIRELEGSLRRVIANAHFTGKPI-T 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + A E L L+ + K + +E+IQ+ VA +Y I DLLS RR R+V RPRQ+AM L+ Sbjct: 344 LDFAKEALRDLLAV-QNKLITLENIQKTVADYYRIKVADLLSTRRSRSVARPRQMAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG+ FG RDHTTV+HA RK+ ++ E D +L ++ L R +S Sbjct: 403 KELTQHSLPEIGQAFGGRDHTTVIHACRKIVELREADASLDEDYANLLRTLS 454 >gi|88705400|ref|ZP_01103111.1| Bacterial chromosomal replication initiator protein, DnaA [Congregibacter litoralis KT71] gi|88700490|gb|EAQ97598.1| Bacterial chromosomal replication initiator protein, DnaA [Congregibacter litoralis KT71] Length = 391 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 137/347 (39%), Positives = 210/347 (60%), Gaps = 15/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L S + FSTF+EG SN++AL AA ++E Y NPLF++ VGLGKTHL+ A+ Sbjct: 56 LVSNYTFSTFVEGKSNQLALAAANQVSENPGGAY-----NPLFLYGGVGLGKTHLMHAVG 110 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NA +P+ R+VYL +E F+ A++ N + K R++D LLIDD+QF K Sbjct: 111 NALKLNKPDARIVYLHSERFVADMVKALQLNAIADFKRYYRSVDALLIDDIQFFAKKDRS 170 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+LL+ +Q++ DR P E++ L+ R++SR G++V + D E R +IL Sbjct: 171 QEEFFHTFNALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPDLETRVAIL 230 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 N+ +LN+ + +A+ + ++ REL+GA +++ +F PI E+ Sbjct: 231 MNKAT-----QARLNLPPDAAFFIAQRIRSNVRELEGALKRVIASANFTRRPI-DVELVK 284 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + K++ +++IQR VA+++ I DL S RR R+V RPRQVAM L+K +T Sbjct: 285 ESLKDLLAL-QDKQVSLDNIQRTVAEYFKIKVADLNSRRRNRSVARPRQVAMALAKELTN 343 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ ET+ + ++ + L RL++ Sbjct: 344 YSLPEIGDSFGGRDHTTVLHACRKIRELRETNSDIHEDYKNLLRLLT 390 >gi|323341100|ref|ZP_08081348.1| replication initiation protein DnaA [Lactobacillus ruminis ATCC 25644] gi|323091521|gb|EFZ34145.1| replication initiation protein DnaA [Lactobacillus ruminis ATCC 25644] Length = 461 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 162/473 (34%), Positives = 263/473 (55%), Gaps = 23/473 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPT-NFLKAWIKNRYLET 92 + ESI+ +V + + + Y SW K N + L VP+ W KN L Sbjct: 3 DLESIWHLVCTYFQAKTTEVSYRSWITTAKPLQFTDNTLLLEVPSVAHRDYWNKN--LTD 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 F E+ + + + +L++ P+ A + +N S S K T S Sbjct: 61 QADAFLEK-TLGEKITVLLKLPEEPNPFTIAEEEIKAEEQAAQSNYSDSLDFSVKTTSSN 119 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ ++ F TF++G+ R+A AA ++AE ++ Y NPLFI+ VGLGKTHL Sbjct: 120 ASESQLNEKYTFDTFVDGNGTRMAYAAALAVAEEPANYY-----NPLFIYGGVGLGKTHL 174 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI N ++ PN R+ Y+++E F F ++I+ + + RN+DLLL+DD+QF Sbjct: 175 MHAIGNRLLQDNPNARIKYVSSEAFANDFINSIKSKNSEAFRQKYRNLDLLLVDDIQFFA 234 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L D KQ+V +DR P+E+ L R+ SR + G+SV + D+E Sbjct: 235 EKDGTQEEFFHTFNALYDDKKQIVLTSDRLPNEIPKLQKRLVSRFRWGLSVDITPPDFET 294 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+ + E L+++++ L ++A + ++ REL+GA L+ ++A + Sbjct: 295 RTAILRKK-----AESDFLDVSDDALSYIAGKIDSNIRELEGA---LMRVSAYAKLKHQR 346 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A E LS L + ++ I++IQ VAK+Y+++ ++L +RV+T+V PRQ+AMY Sbjct: 347 ITTSLAAEALSDLNQGTSSHELTIQEIQNKVAKYYHVTVSELRGKKRVKTIVIPRQIAMY 406 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRL 499 LS+ +T S P+IG+ FG +DHTTV+HA K+ K ++ D +KK+V LLK L Sbjct: 407 LSRKLTDASLPKIGQDFGGKDHTTVIHAYDKITKAVKKDSAIKKDVNALLKEL 459 >gi|153821932|ref|ZP_01974599.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae B33] gi|126520552|gb|EAZ77775.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae B33] Length = 370 Score = 241 bits (614), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 135/349 (38%), Positives = 212/349 (60%), Gaps = 15/349 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ GLGKTHLL A Sbjct: 33 SNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHA 87 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + NA + PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 88 VGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 147 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R + Sbjct: 148 RSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVA 207 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F PI T + Sbjct: 208 IL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDF 261 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K + Sbjct: 262 VREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKEL 320 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 321 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 369 >gi|251771680|gb|EES52255.1| chromosomal replication initiator protein DnaA [Leptospirillum ferrodiazotrophum] Length = 450 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 148/431 (34%), Positives = 241/431 (55%), Gaps = 25/431 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT 129 N + L VP F+ + R+ E+I E + G+E L S+++ S EK + P T Sbjct: 38 NRLLLVVPNGFVSRLVSGRHQESII----EACKILTGLEDLEFSISV-SEEKKSKKPRQT 92 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 P+ P++ + P + S L SR F T++ G SNR A AA ++E Sbjct: 93 PKPPL-------PVLKESASRDPSWESHLISRHTFDTYVVGESNRFAHAAAFQVSENPGK 145 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NP +I+ VGLGKTHL+ AI NA + + P+ R++YLT+E F+ SAIR Sbjct: 146 SY-----NPFYIYGGVGLGKTHLVNAIGNAILAKIPSSRILYLTSESFLNEMVSAIRFAK 200 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K+ R ID+L+IDD+QF+ K Q EF H NSL + KQ++ +D PP+E+ +L Sbjct: 201 MIEFKERYRTIDVLIIDDIQFISTKEKTQEEFFHTFNSLFEKGKQIILTSDCPPNEIATL 260 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+RSR G+ + + D+E + +IL ++ + + + E+V+ +A ++ ++ Sbjct: 261 EERLRSRFASGLIADIQIPDFETKVAILIEKMKLE-----GIALPEDVIYFLATSIKSNI 315 Query: 369 RELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +L ++ +T E+ LLS+L+ + + E I VA +Y +S Sbjct: 316 RELEGAMIRLGAYQTLMGKPVTMEVTRRLLSNLIQSAPA-PVHTELIVNEVASYYKVSPK 374 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 ++ S +R R++ RQVA++L + +T SFPEIGR G RDH+T ++A R VE+ ++D Sbjct: 375 EIRSKKRNRSISVARQVAIFLLRDLTQMSFPEIGREMGGRDHSTAMYAFRSVEENRDSDA 434 Query: 488 TLKKEVELLKR 498 L +++E LKR Sbjct: 435 VLSRDIETLKR 445 >gi|164686446|ref|ZP_02210474.1| hypothetical protein CLOBAR_00011 [Clostridium bartlettii DSM 16795] gi|164604457|gb|EDQ97922.1| hypothetical protein CLOBAR_00011 [Clostridium bartlettii DSM 16795] Length = 451 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 127/344 (36%), Positives = 211/344 (61%), Gaps = 16/344 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A A ++AE + Y NPLF++ VGLGKTHL+ AI Sbjct: 113 LNPKYTFDTFVIGNSNRFAHAACVAVAESPAKAY-----NPLFLYGGVGLGKTHLMHAIG 167 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 ++ +K Q + +VVY+++E F ++I+ + ++ RN+D+LLIDD+QF+ GK Sbjct: 168 HSIMKEQNDAKVVYVSSEKFTNELINSIKSDKNEEFRNKYRNVDILLIDDIQFIAGKEGT 227 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +IL Sbjct: 228 QEEFFHTFNALHEANKQIIISSDRPPKEIPTLEDRLRSRFEMGLIADIQPPDFETRIAIL 287 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 K + I ++I EV+ ++A + ++ REL+GA ++V S ++ ++A E Sbjct: 288 KTKAQIEN-----IDIPNEVMNYIATYIKSNIRELEGALTRVVAYSSLINKDISYDLAVE 342 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L +V T E++++ + I+ V+ + I +D S +R R + PRQ+AMYLS+ +T Sbjct: 343 ALKDIVTTSESQEISVNRIKEKVSTTFGIKMDDFNSKKRTRAIAYPRQIAMYLSRELTDL 402 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 S P+IG FG RDHTTV+HA K+ K D+ L+K EL +++ Sbjct: 403 SLPKIGNEFGGRDHTTVIHAHDKISK----DLELEKNSELKEKI 442 >gi|109896333|ref|YP_659588.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas atlantica T6c] gi|109698614|gb|ABG38534.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas atlantica T6c] Length = 474 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 161/495 (32%), Positives = 268/495 (54%), Gaps = 49/495 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE RL+ + ++ W + L + V L P F+ W++++ Sbjct: 6 RCLE------------RLQQDLPTQQFSMWIRPLVANEEAA-AVTLFAPNRFVLDWVRDK 52 Query: 89 YLETITKLFQE--EHSRIQGVEILVRSVALPSVEKTAS---SPSITKLSPINTNI----- 138 Y+ I LF E + + + I V+S A SV+++ S +P+I + S + +I Sbjct: 53 YIAQIEALFAEFCANDAVPQLRIEVKSAA--SVQQSYSQNPAPAIHQSSAVENSIKSLQK 110 Query: 139 ---SKSPIILGKQT------ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 ++S + + I+ S ++ + F F+EG SN++A A++ +++ Sbjct: 111 HQAARSNVNVQADNSPPNVKIAASHKSNINFNYKFDNFVEGKSNQLARAASKQVSDNPGK 170 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLFI+ GLGKTHLL A+ N I + + VVY+ +E F+ A+++N Sbjct: 171 AY-----NPLFIYGGTGLGKTHLLHAVGNGIIDNKKDATVVYMHSERFVQDMVKALQNNA 225 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E++ + Sbjct: 226 IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGV 285 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R++SR G+++ + + E R +IL + + + K+ + +EV +A+ + ++ Sbjct: 286 EDRLKSRFGWGLTIAIEPPELETRVAIL-----MRKALENKIVLPDEVAFFIAKRLRSNV 340 Query: 369 RELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ VA++Y I Sbjct: 341 RELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKM 398 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+LS RR R+V RPRQ+AM LSK +T S PEIG FG RDHTTVLHA RK+ ++ E Sbjct: 399 ADILSKRRSRSVARPRQMAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIVQLREES 458 Query: 487 ITLKKEVELLKRLIS 501 +K++ + L R +S Sbjct: 459 HDIKEDYQNLIRTLS 473 >gi|262377659|ref|ZP_06070879.1| chromosomal replication initiator protein DnaA [Acinetobacter lwoffii SH145] gi|262307418|gb|EEY88561.1| chromosomal replication initiator protein DnaA [Acinetobacter lwoffii SH145] Length = 458 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 159/472 (33%), Positives = 261/472 (55%), Gaps = 26/472 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+ W + L L + + L P + +I+ +LE IT L Sbjct: 2 LWTDCLNRLRQELSGNVFTMWIRPLVAEE-LEDSLRLYAPNPYWTRYIQEHHLELITILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINT-NISKSPIILGKQTISP 152 ++ R++ VEILV S L + E+ A++ + +P+ K GK + Sbjct: 61 EQLSEGRVRKVEILVDSRPGAILSASEQPATTTAALTSTPMPVPKPKKEKEDSGKNSRR- 119 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ F FS F+EG SN++A T + + ++ + + NPLF++ GLGKTH Sbjct: 120 ---RQLNPLFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPTGLGKTH 171 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QA+ NA ++ +PN RV+Y+TAE F+ F S+++ K + R++DLLL+DD+ L Sbjct: 172 LMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQQGKVEEFKKNCRSLDLLLVDDIHLL 231 Query: 272 QGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D E Sbjct: 232 AGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIE 291 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPIL 388 R IL + + E ++++ + +A+ V + REL+GA N++V R PI Sbjct: 292 TRIEIL-----LKKAESNQVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGTPID 346 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + + L L T + E+IQR+V++++ I +L+ +R R RPRQ+AM L Sbjct: 347 LDVVRESLKDVLAIRART--ISTENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLAMGL 404 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ +T SFPEIG FG RDH+TV+HA KV+ + E D ++ + L+RL+ Sbjct: 405 ARELTGDSFPEIGMAFGGRDHSTVMHACEKVQSLREEDPIFNEDYKNLQRLL 456 >gi|300213940|gb|ADJ78356.1| Chromosomal replication initiator protein dnaA [Lactobacillus salivarius CECT 5713] Length = 446 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 160/468 (34%), Positives = 259/468 (55%), Gaps = 31/468 (6%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 L ++ +S++ + + P Y +WF + + + ++VPT + + + Sbjct: 1 MLNLDLDSLWQYIIESFSKSLNPASYKAWFGPAEPVQYIDQTLIVNVPTPLHRDYWTQKL 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT---KLSPINTNISKSPIILG 146 I+ L QE + G +I V + A+S S+T K+S N S S + Sbjct: 61 NGQISDLIQE----VSGEKITVLAKLPSDPNPLANSESVTTPKKVSVAENNNSSSFL--- 113 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K+T L+ R+ F TF+ G N++A AA ++AE V NPLF + VG Sbjct: 114 KET-------QLNDRYTFDTFVVGKGNQLAHAAALAVAEEPG-----VFYNPLFFYGGVG 161 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI + ++ +P+ +V Y+T+E F F S+I+ + R++DLLL+D Sbjct: 162 LGKTHLMHAIGHQMLENRPDAKVKYVTSESFANDFISSIQTKRQEEFRREYRSVDLLLVD 221 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K+ Q EF H N+L D KQ+V ++DR P+E+ L R+ SR + G+SV + Sbjct: 222 DIQFFADKVGTQEEFFHTFNALYDDKKQIVLSSDRLPNEIPKLQQRLVSRFKWGLSVDIT 281 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL+N+ E ++I ++ L ++A + ++ REL+GA ++ S Sbjct: 282 PPDFETRIAILRNK-----AEAEHVSIPDDTLSYIAGQIDSNIRELEGALMRVEAFSSMT 336 Query: 386 --PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 PI T+ +A E L +L +G++ K+ I IQ VAK+Y+++ DL +RV+++V PRQ Sbjct: 337 RTPISTS-LAAEALKNLKVSGKSSKLTIPIIQDKVAKYYHVTIADLKGKKRVKSIVIPRQ 395 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 +AMYLS+ +T S P+IG FG +DHTTV+HA K+ + L TD TL K Sbjct: 396 IAMYLSRELTDASLPKIGNEFGGKDHTTVIHAHEKIAEALHTDTTLXK 443 >gi|227543719|ref|ZP_03973768.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri CF48-3A] gi|300908784|ref|ZP_07126247.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri SD2112] gi|154705516|gb|ABS84184.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri] gi|227186287|gb|EEI66358.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri CF48-3A] gi|300894191|gb|EFK87549.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri SD2112] Length = 440 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 139/351 (39%), Positives = 214/351 (60%), Gaps = 15/351 (4%) Query: 151 SPVF--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P F +PL+ + F TF+ G N++A AA ++AE Y NPLFI+ VGLG Sbjct: 96 TPSFEMDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLY-----NPLFIYGGVGLG 150 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL++AI N ++ PN RV Y+T+E F + +AIR+N L++ RN+DLLLIDD+ Sbjct: 151 KTHLMEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYRNLDLLLIDDI 210 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL K Q EF + N+L D KQ+V +DR P+E+ L R+ SR + G++V + Sbjct: 211 QFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLTVEITPP 270 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAP 386 D E R +IL++++ E+ ++I + L ++A + T+ REL+GA ++ F + Sbjct: 271 DLETRIAILRSKV-----EEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSGE 325 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +A + L L + + + I IQ+ VA YNI++ D+L +RV+ +V PRQ+AM Sbjct: 326 RITPSLASQALKGLHRVAKNE-ISIAKIQKQVADFYNITQGDILGKKRVKQIVMPRQIAM 384 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 YLS+ +T S P+IG FG +DHTTVLHA+ K+E L+ D L+ ++ LK Sbjct: 385 YLSRELTDSSLPKIGNEFGGKDHTTVLHAIDKIEAELKKDTDLQNDITKLK 435 >gi|330500915|ref|YP_004377784.1| chromosomal replication initiation protein [Pseudomonas mendocina NK-01] gi|328915201|gb|AEB56032.1| chromosomal replication initiation protein [Pseudomonas mendocina NK-01] Length = 494 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 135/348 (38%), Positives = 208/348 (59%), Gaps = 13/348 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 157 SYLNRTFTFDNFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 211 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N + + PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 212 VGNHLLAKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFAKKE 271 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R + Sbjct: 272 RSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVA 331 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL + + + K+++ + +A+ + ++ REL+GA +++ H +T E+ Sbjct: 332 IL-----MKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELI 386 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + K + I++IQR A++Y I DLLS RR R++ RPRQVAM LSK +T Sbjct: 387 RESLKDLLAL-QDKLVSIDNIQRTTAEYYKIKITDLLSKRRSRSIARPRQVAMALSKELT 445 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+ ++ +D ++++ + L R ++ Sbjct: 446 NHSLPEIGVAFGGRDHTTVLHACRKIAELRGSDADIREDYKNLLRTLT 493 >gi|239624133|ref|ZP_04667164.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520519|gb|EEQ60385.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 456 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 154/458 (33%), Positives = 257/458 (56%), Gaps = 41/458 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY----LETITKLFQEEHSRIQGVEIL 110 Y++W + LK +S N V + VP ++ +Y TI++ ++E V+ Sbjct: 27 YSTWLEPLKPYSFKDNTVIIIVPEQTFLQYVNKKYGFLLKVTISEFLEKECE----VDFK 82 Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP--VFGSPLDSRFVFSTFI 168 V+ + E S P + I K+ + TISP + + L+S++ F TF+ Sbjct: 83 VKEQIIEKEE--PSGPQL---------IQKNTV-----TISPDVIQSANLNSKYTFDTFV 126 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 GS+N +A AA ++AE Y NPLFI+ VGLGKTHL+ AIA+ +K P+ + Sbjct: 127 VGSNNNLAHAAALAVAESPGEIY-----NPLFIYGGVGLGKTHLMHAIAHFILKNNPSSK 181 Query: 229 VVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 ++Y+T+E F AIR+ ++ RN D+LLIDD+QF+ GK Q EF H Sbjct: 182 ILYVTSETFTNELIDAIRNKNNITTTEFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTF 241 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L +S KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R +IL+ + Sbjct: 242 NTLYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK----- 296 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNT 403 +E NI+ EV+ ++A + ++ REL+GA ++V +T E+A+E L +++ Sbjct: 297 EEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLNKCDITLELAEEALKDIISP 356 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 +++ + I ++V+ HY ++ D+ S +R + +V PRQ+ MYL + MT IGR Sbjct: 357 NAQREVTPDLIIQIVSDHYGLTPLDISSQKRNKEIVYPRQIVMYLCRNMTDTPLQTIGRY 416 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDHTT++H K+ ++ D TLK +E+LK+ I+ Sbjct: 417 LGGRDHTTIIHGSEKIAGDIKKDDTLKNTIEILKKKIN 454 >gi|225386353|ref|ZP_03756117.1| hypothetical protein CLOSTASPAR_00097 [Clostridium asparagiforme DSM 15981] gi|225047535|gb|EEG57781.1| hypothetical protein CLOSTASPAR_00097 [Clostridium asparagiforme DSM 15981] Length = 456 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 158/480 (32%), Positives = 268/480 (55%), Gaps = 39/480 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N E I +++ + ++++ + +W LK +S +N V + VP A++K RY Sbjct: 5 IEKNWEQI--LLNLKEEHEISDISFKTWLLPLKPYSFKNNTVTIIVPEQTFLAYVKRRY- 61 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ-- 148 + L + S GVE + ++ A + N+S P ++ K Sbjct: 62 ---SLLMKVAISEFLGVEC---EIEFKLEDQLAEA-----------NLSTEPQLIEKNNT 104 Query: 149 TISP--VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 ++SP + + L+ ++ F TF+ GS+N +A AA ++AE Y NPLFI+ VG Sbjct: 105 SVSPDVIQSANLNPKYTFDTFVVGSNNNLAHAAALAVAESPGEIY-----NPLFIYGGVG 159 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLL 263 LGKTHL+ AIA+ +K P +++Y+++E F AIR+ ++ RN D+L Sbjct: 160 LGKTHLMHAIAHFILKNTPTSKILYVSSETFTNELIDAIRNKNNITTTEFREKYRNNDVL 219 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF+ GK Q EF H N+L +S KQ++ ++D+PP E+E+L+ R+RSR + G++V Sbjct: 220 LIDDIQFIIGKESTQEEFFHTFNTLYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTV 279 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + DYE R +IL+ + +E NI+ EV+ ++A + ++ REL+GA ++V Sbjct: 280 DIQSPDYETRMAILQKK-----EELEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALS 334 Query: 383 SFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +T E+A+E L +++ G +++ + I ++V+ H+ ++ D+ S +R + +V P Sbjct: 335 RLNKCDITLELAEEALKDIISPGAQREVTPDLIIQVVSDHFGLAPLDISSQKRNKEIVYP 394 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+ MYL + MT IGR G RDHTTV+H K+ L D TLK +E+LK+ I+ Sbjct: 395 RQIVMYLCRNMTATPLQTIGRFLGGRDHTTVIHGADKITADLLKDETLKNTIEILKKKIN 454 >gi|194467403|ref|ZP_03073390.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri 100-23] gi|194454439|gb|EDX43336.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri 100-23] Length = 440 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 139/351 (39%), Positives = 214/351 (60%), Gaps = 15/351 (4%) Query: 151 SPVF--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P F +PL+ + F TF+ G N++A AA ++AE Y NPLFI+ VGLG Sbjct: 96 TPSFEMDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLY-----NPLFIYGGVGLG 150 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL++AI N ++ PN RV Y+T+E F + +AIR+N L++ RN+DLLLIDD+ Sbjct: 151 KTHLMEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYRNLDLLLIDDI 210 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL K Q EF + N+L D KQ+V +DR P+E+ L R+ SR + G++V + Sbjct: 211 QFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLTVEITPP 270 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAP 386 D E R +IL++++ E+ ++I + L ++A + T+ REL+GA ++ F + Sbjct: 271 DLETRIAILRSKV-----EEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSGE 325 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +A + L L + + + I IQ+ VA YNI++ D+L +RV+ +V PRQ+AM Sbjct: 326 RITPSLASQALKGLHRVAKNE-ISIATIQKQVADFYNITQGDILGKKRVKQIVMPRQIAM 384 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 YLS+ +T S P+IG FG +DHTTVLHA+ K+E L+ D L+ ++ LK Sbjct: 385 YLSRELTDSSLPKIGNEFGGKDHTTVLHAIDKIEAELKKDTDLQNDITKLK 435 >gi|319945982|ref|ZP_08020231.1| DNA-directed DNA replication initiator protein [Streptococcus australis ATCC 700641] gi|319747790|gb|EFW00035.1| DNA-directed DNA replication initiator protein [Streptococcus australis ATCC 700641] Length = 456 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 156/429 (36%), Positives = 238/429 (55%), Gaps = 38/429 (8%) Query: 89 YLET-ITKLFQEEH-SRIQGVEILVRSVALPSVEKTAS----------SPSITKLSPINT 136 YL+ + KLF EE+ +++ IL + +VE T S LS +N Sbjct: 44 YLDAEVKKLFWEENMTKV----ILTAGFEIYAVELTISYQFNLEEEEEEKEFIPLSEMNR 99 Query: 137 N--ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 N +S +PI+ + P+ + L ++ F F+ G N+ AL AA +++E + Y Sbjct: 100 NYAVSHAPIV----DLPPI-QTGLKKKYTFDNFVSGDGNQWALAAALAVSENLATTY--- 151 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLFI+ GLGKTHLL AI N ++ PN RV Y+ AE F+ F +R N K Sbjct: 152 --NPLFIYGGPGLGKTHLLNAIGNQIMENYPNARVKYIPAESFINEFLERLRLNDMDTFK 209 Query: 255 DSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + RN+DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L+SL+ R+ Sbjct: 210 KTYRNLDLLLIDDIQSLGGKKVTTQEEFFNTFNALYGDNKQIVLTSDRSPDHLDSLEERL 269 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 +R + G++ + D+E R +IL+N++ ED ++ L ++A ++ R+L+ Sbjct: 270 VTRFKWGLTQNITPPDFETRIAILRNKI-----EDLDFTFPDDTLEYLAGQFDSNVRDLE 324 Query: 373 GAFNQ--LVFRHSFAPILTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDL 429 GA N LV R +T ++A E + N + + IE IQ V K YN+S N++ Sbjct: 325 GALNDISLVARVKKIKDITIDVAAEAIRARKNEALQITVIPIEKIQTEVGKFYNVSVNEI 384 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 +RRV+ +V RQVAMYL++ MT S P IGR FG +DHTTV+HA K++ M+E D L Sbjct: 385 KGSRRVQNIVLARQVAMYLAREMTDNSLPRIGREFGGKDHTTVMHAYEKIKGMIEIDDNL 444 Query: 490 KKEVELLKR 498 + E++ +K+ Sbjct: 445 RLEIQTIKK 453 >gi|148543244|ref|YP_001270614.1| chromosomal replication initiation protein [Lactobacillus reuteri DSM 20016] gi|184152656|ref|YP_001840997.1| chromosomal replication initiation protein [Lactobacillus reuteri JCM 1112] gi|227364307|ref|ZP_03848400.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri MM2-3] gi|325683506|ref|ZP_08163022.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus reuteri MM4-1A] gi|167016901|sp|A5VHF3|DNAA_LACRD RecName: Full=Chromosomal replication initiator protein DnaA gi|226735822|sp|B2G4Y5|DNAA_LACRJ RecName: Full=Chromosomal replication initiator protein DnaA gi|148530278|gb|ABQ82277.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri DSM 20016] gi|183224000|dbj|BAG24517.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri JCM 1112] gi|227070620|gb|EEI08950.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri MM2-3] gi|324977856|gb|EGC14807.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus reuteri MM4-1A] Length = 440 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 139/351 (39%), Positives = 214/351 (60%), Gaps = 15/351 (4%) Query: 151 SPVF--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P F +PL+ + F TF+ G N++A AA ++AE Y NPLFI+ VGLG Sbjct: 96 TPSFEMDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLY-----NPLFIYGGVGLG 150 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL++AI N ++ PN RV Y+T+E F + +AIR+N L++ RN+DLLLIDD+ Sbjct: 151 KTHLMEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYRNLDLLLIDDI 210 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL K Q EF + N+L D KQ+V +DR P+E+ L R+ SR + G++V + Sbjct: 211 QFLANKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLTVEITPP 270 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAP 386 D E R +IL++++ E+ ++I + L ++A + T+ REL+GA ++ F + Sbjct: 271 DLETRIAILRSKV-----EEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSGE 325 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +A + L L + + + I IQ+ VA YNI++ D+L +RV+ +V PRQ+AM Sbjct: 326 RITPSLASQALKGLHRVAKNE-ISIATIQKQVADFYNITQGDILGKKRVKQIVMPRQIAM 384 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 YLS+ +T S P+IG FG +DHTTVLHA+ K+E L+ D L+ ++ LK Sbjct: 385 YLSRELTDSSLPKIGNEFGGKDHTTVLHAIDKIETELKKDTDLQNDITKLK 435 >gi|153811986|ref|ZP_01964654.1| hypothetical protein RUMOBE_02379 [Ruminococcus obeum ATCC 29174] gi|149831885|gb|EDM86971.1| hypothetical protein RUMOBE_02379 [Ruminococcus obeum ATCC 29174] Length = 459 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 133/349 (38%), Positives = 216/349 (61%), Gaps = 15/349 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TFI G++N+ A AA ++AE Y NPLFI+ GLGKTHL+ +IA Sbjct: 118 LNPKYIFDTFIVGNNNKFAQAAALAVAESPGDTY-----NPLFIYGGAGLGKTHLMHSIA 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALN-LKDSLRNIDLLLIDDMQFLQGK 274 + I+ N +V+Y+T+E F IR+ N A++ ++ RNID+LL+DD+QF+ GK Sbjct: 173 HYIIEHDENSKVLYVTSEEFTNELIETIRNGNNSAMSKFREKYRNIDVLLVDDIQFIIGK 232 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H NSL + KQ++ ++D+PP ++E L+ R RSR + G+ + L DYE R Sbjct: 233 ESTQEEFFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRM 292 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL + +E NI+EEV+ ++A + ++ REL+GAFN+++ +T E+ Sbjct: 293 AILHKK-----EELEGYNISEEVIKYIATNIKSNIRELEGAFNKVMASSKLEKKEVTLEL 347 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A++ L +++ E K + + I +VA+HY+++ DL N+R +V PRQ+AMYL + + Sbjct: 348 AEQALKDIISPDEQKVITPDYIISVVAEHYHVTVADLCGNKRSSKIVMPRQIAMYLCRDI 407 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S IG+ GDRDHTTV+H + K+E L+T+ LK ++ L++ I+ Sbjct: 408 IDTSLKTIGKNLGDRDHTTVMHGIEKIENELKTNDNLKNSIDTLRKKIN 456 >gi|292490171|ref|YP_003525610.1| chromosomal replication initiator protein DnaA [Nitrosococcus halophilus Nc4] gi|291578766|gb|ADE13223.1| chromosomal replication initiator protein DnaA [Nitrosococcus halophilus Nc4] Length = 450 Score = 240 bits (612), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 153/432 (35%), Positives = 235/432 (54%), Gaps = 25/432 (5%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 + L P F+ W+++ I L H +E + +E + +P Sbjct: 38 LRLYAPNQFVVDWVQDCAESRINALLS--HYSDGRIEKAI-------LEVGSCNPQPQAP 88 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 SP+ S+SP + I + S L+ + F+ F+EG SN++ A+ +AE Y Sbjct: 89 SPVPELPSESPFAPSPRGIDRIPESRLNKNYTFNNFVEGKSNQLPRAASYQVAENPGSAY 148 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLFI+ VGLGKTHL+ A+ N R P+ RV YL +E F+ A++ N Sbjct: 149 -----NPLFIYGGVGLGKTHLMHAVGNYIRTRSPDARVAYLHSEQFVAEMIKALQLNAIN 203 Query: 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K R++D+LLIDD+QF GK Q EF + N+LL+ Q++ DR P E+ L+ Sbjct: 204 EFKARYRSVDVLLIDDIQFFAGKERSQEEFFYTFNTLLEVQHQIILTCDRFPKEVNGLEE 263 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R++SR G++V + + E R +IL N+ I + ++++V + R + ++ RE Sbjct: 264 RLKSRFGWGLTVAVEPPELETRVAILMNKANIE-----SVALSDDVAFFLGRLIYSNVRE 318 Query: 371 LDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 L+GA +++ F PI T E+ E L L+ E K + IE+IQ+ VA++Y I +D Sbjct: 319 LEGALRRVIAYSRFTRRPI-TMELTREALKDLLALQE-KLVTIENIQKTVAEYYKIRVSD 376 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L S RR R + RPRQ+AM LSK +T S EIG+ FG RDHTTVLHA RK++++ TD Sbjct: 377 LPSKRRSRAIARPRQIAMTLSKELTDHSLTEIGKSFGGRDHTTVLHACRKIDELKRTDRR 436 Query: 489 LKKEVE-LLKRL 499 + ++ + LLKRL Sbjct: 437 VAEDYQNLLKRL 448 >gi|253581087|ref|ZP_04858347.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847623|gb|EES75593.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 451 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 254/457 (55%), Gaps = 44/457 (9%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLK-AWIKNRYLETITKL-FQEEHSRIQGVEILVR 112 + +W + L + V+ N+V + VP+ + +I +Y KL Q S + G+E Sbjct: 26 FNTWLKPLTVYEVVDNVVTIIVPSEQVGLNYISKKY-----KLPLQVTISEVTGMENCDI 80 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 + LP P ++SP + + + L+ ++ F TF+ GS+ Sbjct: 81 NFILPE-----DVPKKEEVSP-----------KAQSQDARCEEAHLNPKYTFDTFVVGSN 124 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N+ A AA ++AE Y NPLFI+ GLGKTHL+ +IA+ I N +V+Y+ Sbjct: 125 NKFAQAAALAVAESPGDTY-----NPLFIYGGAGLGKTHLMHSIAHFIIDHDENSKVLYV 179 Query: 233 TAEYFMWRFASAIRD--NCALN-LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 T+E F IR+ N A+ ++ RNID+LL+DD+QF+ GK Q EF H NSL Sbjct: 180 TSEEFTNELIETIRNGNNSAMTKFREKYRNIDVLLVDDIQFIIGKESTQEEFFHTFNSLH 239 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + KQ++ ++D+PP ++E L+ R RSR + G+ + L DYE R +IL + +E Sbjct: 240 SAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKK-----EEMD 294 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTG 404 +INEEV+ ++A + ++ REL+GA N+++ +FA + +T E+A++ L +++ Sbjct: 295 GYDINEEVIKYIANNIKSNIRELEGAINKVM---AFAKLEKKEVTLELAEQALKDIISPD 351 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 E K + + I MVA+H++++ +DL N+R +V PRQ+AMYL + + IG+ Sbjct: 352 EKKVITPDYIISMVAEHFDVTVDDLCGNKRNSKIVTPRQIAMYLCREIISTPLKSIGKCL 411 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G+RDHTT++H + K+EK + D LK +E LK+ I+ Sbjct: 412 GNRDHTTIMHGIDKIEKEINNDENLKNTIETLKKKIN 448 >gi|312128810|ref|YP_003996150.1| chromosomal replication initiator protein dnaa [Leadbetterella byssophila DSM 17132] gi|311905356|gb|ADQ15797.1| chromosomal replication initiator protein DnaA [Leadbetterella byssophila DSM 17132] Length = 465 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 155/482 (32%), Positives = 256/482 (53%), Gaps = 35/482 (7%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL 74 +E A K V K CL V ++ V + +WF+ + + +++ + + Sbjct: 1 METAVKNDVAQVWKDCLMV------------IREHVTEQSFKTWFEPIIPYKLINKRLII 48 Query: 75 SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLS 132 VP+ F W++N Y++ + K + +E I++ S + +K +P Sbjct: 49 QVPSQFFYEWLENNYVKILRKALDYAIGKDGQLEYTIIIDSGGQKAAQKKVETPK----- 103 Query: 133 PINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 + I K+P + K + +F S L+ + F ++EGS NR+A A+ ++A+ S Sbjct: 104 EDSRVIPKNPFEI-KTSSDIIFDSQLNKNYRFENYVEGSCNRLARAASVAVAQKPS---- 158 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQP--NLRVVYLTAEYFMWRFASAIRDNCA 250 NPL I+ VGLGKTHL+QAI N I+ QP N V+Y+++E F +F +AIRDN Sbjct: 159 VTAFNPLMIYGDVGLGKTHLVQAIGNY-IEDQPGNNKLVLYVSSEKFTSQFINAIRDNSL 217 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + + +D+L+IDD+QFL GK Q F H+ N L S KQ+V +DRPP EL ++ Sbjct: 218 QDFMNFYMMVDVLIIDDIQFLAGKEKTQETFFHIFNHLHQSGKQIVMTSDRPPRELSGME 277 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR + G++ + + D E R +I++N+LA + E ++ EV+ ++A V ++ R Sbjct: 278 DRLLSRFKWGLTTDIQIPDLETRMAIIQNKLATEKAE-----MDMEVVEYLANCVDSNVR 332 Query: 370 ELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+G N L+ + + E+A + LV + K + I+ I +V H+NI D Sbjct: 333 ELEGVLNSLIVDSALLQRKIDIELAKYRIKSLVEESQ-KAISIDKIIDVVTSHFNIKVAD 391 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + R+R VV PRQ+AM+L+K T S IG FG RDH+TV+HA++ + + D Sbjct: 392 IKGKTRLREVVLPRQIAMFLTKEYTELSLKAIGYHFGGRDHSTVIHAIQTINDLQNQDRE 451 Query: 489 LK 490 L+ Sbjct: 452 LQ 453 >gi|255659821|ref|ZP_05405230.1| ATPase [Mitsuokella multacida DSM 20544] gi|260847896|gb|EEX67903.1| ATPase [Mitsuokella multacida DSM 20544] Length = 490 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 160/501 (31%), Positives = 263/501 (52%), Gaps = 51/501 (10%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + ++++ + +++K + + WF+ +K S+ + LS + +K WI + YL Sbjct: 3 QTQLQAVWEQILTKMKETLAESAF-KWFKSVKPISLTATGLVLSAQNDLVKDWITSHYLT 61 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVE------------------------KTASSPS 127 I ++ + G + V + LPSV+ + A S Sbjct: 62 II----EDAVGAVLGSKRKVDFLVLPSVQPEPEPEPAKPEKDADSTQDTKEAKEAAGHSS 117 Query: 128 ITKLSPINTNISK----SPIILGK-QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 K P + + +P+ G ++P S L+ ++ F TF+ GSSNR A AA + Sbjct: 118 RKKEDPNQGTLFQEQPPAPVDNGDMHIVAPGDRSSLNPKYTFETFVTGSSNRFAHAAAMA 177 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +AE Y NP F++ VGLGKTHL+ AI N ++ P +RV+Y+++E F Sbjct: 178 VAESPGKVY-----NPFFMYGGVGLGKTHLMHAIGNRVLQNHPEMRVLYVSSEQFTNEII 232 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRP 301 AI++ A + R ID+L++DD+QFL GK Q EF + N+L + KQ++ ++DRP Sbjct: 233 RAIQEGKAELFRQKYRTIDVLMVDDIQFLSGKQSTQEEFFNTFNALHVADKQIILSSDRP 292 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E++ L+ R+RSR +GG+ + D E R +ILKN+ + +++ +VLM +A Sbjct: 293 PREVQKLEDRLRSRFEGGLITDIQAPDLETRIAILKNKALLDH-----VDVPNDVLMFIA 347 Query: 362 RTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 + ++ REL+GA ++V S P+ T ++ E L + K++ +E IQ +VA Sbjct: 348 NRIDSNIRELEGALTRVVAYASLINKPV-TTDVVAEALKDVFPNSHKKEVTLEVIQEIVA 406 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++ I DL S +R R++ PRQ+AMYL + +T S P+IG FG RDHTTVLHA K+ Sbjct: 407 TYFKIRIEDLHSKKRTRSIAFPRQIAMYLCRELTDTSLPQIGNFFGGRDHTTVLHAYDKI 466 Query: 480 EKMLETDITLKKEVELLKRLI 500 K E + L K ++K LI Sbjct: 467 AKEREENAKLHK---IIKDLI 484 >gi|189423083|ref|YP_001950260.1| chromosomal replication initiation protein [Geobacter lovleyi SZ] gi|189419342|gb|ACD93740.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ] Length = 459 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 150/468 (32%), Positives = 254/468 (54%), Gaps = 25/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ ++ L+ + P Y +W Q ++F ++ ++L VP F K W+++ Y++ I Sbjct: 11 AVWNQTATNLEKVISPQNYTNWIQPIQFSHADNHSLYLIVPNQFFKEWLEDNYVDLINSA 70 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL-SPINTNISKSPIILGKQTISPVFG 155 + V L+R EK A + + + +P S + + +P+ Sbjct: 71 LSVTADKNMLVTFLIR-------EKEADNAPLEIMEAPQPKESSTLKDLDQAKETTPL-- 121 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PL+ R+ F F+ G+ N+ A AA ++ SH + NPLFI+ VGLGK+HLL A Sbjct: 122 NPLNPRYTFDQFVSGAGNQFAHAAAMAV----SHN-PAITYNPLFIYGGVGLGKSHLLNA 176 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + + I + ++ Y +AE FM + I+ N ++ R+ID+LLIDD+QF+ GK Sbjct: 177 VGHKIISDNSSTKICYCSAEKFMHEMVNCIKLNKMDEFRERFRSIDVLLIDDIQFITGKE 236 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ+V +D+ P E+ +L+ R+RSR + G+ + D E + + Sbjct: 237 RTQVEFFHTFNALYESHKQIVITSDKFPREMPNLEDRLRSRFEWGLIADIQPPDLETKIA 296 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 ILK + + ++ + ++V +A + T + REL+G +L S PI Sbjct: 297 ILKKK-----ADTNRILLPDDVAYFLASSDTRNIRELEGMLIRLGAYSSLQHIPITLTMA 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L LVN + K++ +E IQ+ VA H+ + DL S +R++ V RQVA++L + M Sbjct: 352 QNNLKDILVN--KRKEITVELIQKTVADHFGLKVADLKSEKRLKAFVLARQVAIWLCRDM 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S+P+IG RFG +DH+TV+HA +K+EK+L D L K ++ LK I Sbjct: 410 TTASYPDIGARFGGKDHSTVIHATKKIEKLLAEDHKLSKIIDELKESI 457 >gi|163751709|ref|ZP_02158928.1| chromosomal replication initiation protein [Shewanella benthica KT99] gi|161328448|gb|EDP99604.1| chromosomal replication initiation protein [Shewanella benthica KT99] Length = 396 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 136/349 (38%), Positives = 209/349 (59%), Gaps = 15/349 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F F+EG SN++ AAQ +AE Y NPLF++ GLGKTHLL A Sbjct: 59 SNINPAYQFDNFVEGKSNQLGKAAAQQVAENPGGAY-----NPLFLYGGTGLGKTHLLHA 113 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + NA IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF K Sbjct: 114 VGNAIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKD 173 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ QV+ +D+ P E++ ++ R++SR G++V + + E R + Sbjct: 174 RSQEEFFHTFNALLEGNHQVILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVA 233 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL + + + +N+ +EV +A+ + ++ REL+GA N+++ +F PI T + Sbjct: 234 IL-----MRKALESGVNLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDF 287 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK + Sbjct: 288 VREALRDLLALQE-KLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKEL 346 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHA R++ ++ E + +K++ L R +S Sbjct: 347 TNQSLPEIGDAFGGRDHTTVLHACRRIAQLREENHDIKEDYANLIRTLS 395 >gi|315925611|ref|ZP_07921821.1| DNA-directed DNA replication initiator protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621152|gb|EFV01123.1| DNA-directed DNA replication initiator protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 468 Score = 239 bits (611), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 149/445 (33%), Positives = 241/445 (54%), Gaps = 28/445 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILV 111 + +WF +K N V+L V +F +A ++ RY ET+T F ++ ++ V IL Sbjct: 36 FRTWFPSVKPILYRDNFVYLLVENSFNQAVMQERY-ETVTNTVLSFLTKNDHLKAVFILN 94 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF-GSPLDSRFVFSTFIEG 170 +P AS+P T +T + P G+ +++++ F F+ G Sbjct: 95 ED-DIPKETAPASAPLETAEERTDT---------PDANVKPAHTGTGINAKYTFERFVIG 144 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 +NR A A +++E S R NPLFI+ VGLGKTHL+QAI N + P+ +V+ Sbjct: 145 ENNRFAHAACVAVSEAPSE-----RYNPLFIYGGVGLGKTHLMQAIGNYILTYTPDKKVI 199 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLD 289 Y++ E F F AI++ L+ ++ RN+D+LLIDD+QFL GK Q EF H N+L D Sbjct: 200 YVSCETFTNEFIDAIQNKNNLSFRNRYRNVDILLIDDIQFLSGKEGTQEEFFHTFNALHD 259 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 KQ+V ++DRPP E+ L R+RSR + G+ + ++E R +IL+ + A S ED Sbjct: 260 ENKQIVISSDRPPREIPKLAERLRSRFEMGLITDISTPNFETRMAILRKK-AESNAED-- 316 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKK 408 I ++V+ +A + ++ REL+GA +V + ++ + A E L+ L Sbjct: 317 --IPDDVMSFIADNIHSNIRELEGALTTVVAYSKLHGETISLDFAREALADLF-VSRQHD 373 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + + I+ + AK++N + D+ +R + + PRQVAMYL + MT S P IG FG RD Sbjct: 374 INADYIKEITAKYFNTTIEDMNGKKRTKAITTPRQVAMYLCREMTNMSLPAIGEAFGGRD 433 Query: 469 HTTVLHAVRKVEKMLETDITLKKEV 493 H+TV+HA +K+ + ++ + K V Sbjct: 434 HSTVIHAYQKISENIDANTDFKNLV 458 >gi|160895451|ref|YP_001561033.1| chromosomal replication initiation protein [Delftia acidovorans SPH-1] gi|160361035|gb|ABX32648.1| chromosomal replication initiator protein DnaA [Delftia acidovorans SPH-1] Length = 468 Score = 239 bits (611), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 150/469 (31%), Positives = 253/469 (53%), Gaps = 17/469 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ + +L ++ + +W + L H + V + V F WI+ +Y I+ Sbjct: 11 QGLWQVCVEQLGQEMPEQQFNTWIKPLTAHVAEDFSKVTVYVANRFKLDWIRAQYAGRIS 70 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS-PINTNISKSPIILGKQTISPV 153 + + + Q V + + SV +T PS ++ S P T ++ P + + +PV Sbjct: 71 AMLESLYG--QPVTLELALAQRESVVRTYVRPSSSERSAPPETIVTSVPTVTSEDAAAPV 128 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F + L++ F T +EG++NR+A +AA +A H Y NPLFI+ VGLGKTHL+ Sbjct: 129 FRTRLNAALTFETLVEGTANRMARSAAMHVAGSPGHLY-----NPLFIYGGVGLGKTHLV 183 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +P+ +V+Y+ AE F+ A + K+ ++DLLLIDD+QF Sbjct: 184 HAVGNKLLADKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFAN 243 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR Sbjct: 244 KDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMR 303 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL N+ E P EEV VA+ V ++ REL+GA +++ F ++ + Sbjct: 304 VAILINKARAENAEMP-----EEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQ 358 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L L++ + +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K Sbjct: 359 LAREALRDLLSI-QNRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKE 417 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 418 LTQKSLPEIGELFGGRDHTTVLHAVRKIAGERQQLTELNQQLHVLEQTL 466 >gi|69246706|ref|ZP_00604074.1| chromosomal replication initiator protein, DnaA [Enterococcus faecium DO] gi|257878646|ref|ZP_05658299.1| chromosomal replication initiator protein [Enterococcus faecium 1,230,933] gi|257881312|ref|ZP_05660965.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,502] gi|257885587|ref|ZP_05665240.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,501] gi|257890529|ref|ZP_05670182.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,410] gi|257893104|ref|ZP_05672757.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,408] gi|258615270|ref|ZP_05713040.1| chromosomal replication initiation protein [Enterococcus faecium DO] gi|260558227|ref|ZP_05830423.1| chromosomal replication initiator protein [Enterococcus faecium C68] gi|261206917|ref|ZP_05921606.1| chromosomal replication initiator protein [Enterococcus faecium TC 6] gi|289566506|ref|ZP_06446930.1| chromosomal replication initiator protein DnaA [Enterococcus faecium D344SRF] gi|293553547|ref|ZP_06674174.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1039] gi|293563251|ref|ZP_06677703.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1162] gi|293569159|ref|ZP_06680465.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1071] gi|294616659|ref|ZP_06696430.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1636] gi|294623759|ref|ZP_06702587.1| chromosomal replication initiator protein DnaA [Enterococcus faecium U0317] gi|314940131|ref|ZP_07847311.1| replication initiator protein DnaA [Enterococcus faecium TX0133a04] gi|314943038|ref|ZP_07849842.1| replication initiator protein DnaA [Enterococcus faecium TX0133C] gi|314948156|ref|ZP_07851552.1| replication initiator protein DnaA [Enterococcus faecium TX0082] gi|314953430|ref|ZP_07856348.1| replication initiator protein DnaA [Enterococcus faecium TX0133A] gi|314993831|ref|ZP_07859167.1| replication initiator protein DnaA [Enterococcus faecium TX0133B] gi|314998144|ref|ZP_07863026.1| replication initiator protein DnaA [Enterococcus faecium TX0133a01] gi|68195120|gb|EAN09579.1| chromosomal replication initiator protein, DnaA [Enterococcus faecium DO] gi|257812874|gb|EEV41632.1| chromosomal replication initiator protein [Enterococcus faecium 1,230,933] gi|257816970|gb|EEV44298.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,502] gi|257821443|gb|EEV48573.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,501] gi|257826889|gb|EEV53515.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,410] gi|257829483|gb|EEV56090.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,408] gi|260075401|gb|EEW63707.1| chromosomal replication initiator protein [Enterococcus faecium C68] gi|260078545|gb|EEW66247.1| chromosomal replication initiator protein [Enterococcus faecium TC 6] gi|289161715|gb|EFD09591.1| chromosomal replication initiator protein DnaA [Enterococcus faecium D344SRF] gi|291588128|gb|EFF19970.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1071] gi|291590479|gb|EFF22217.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1636] gi|291596713|gb|EFF27936.1| chromosomal replication initiator protein DnaA [Enterococcus faecium U0317] gi|291602302|gb|EFF32527.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1039] gi|291604790|gb|EFF34272.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1162] gi|313587856|gb|EFR66701.1| replication initiator protein DnaA [Enterococcus faecium TX0133a01] gi|313591722|gb|EFR70567.1| replication initiator protein DnaA [Enterococcus faecium TX0133B] gi|313594533|gb|EFR73378.1| replication initiator protein DnaA [Enterococcus faecium TX0133A] gi|313598238|gb|EFR77083.1| replication initiator protein DnaA [Enterococcus faecium TX0133C] gi|313640636|gb|EFS05216.1| replication initiator protein DnaA [Enterococcus faecium TX0133a04] gi|313645410|gb|EFS09990.1| replication initiator protein DnaA [Enterococcus faecium TX0082] Length = 444 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 148/474 (31%), Positives = 257/474 (54%), Gaps = 39/474 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLE 91 V+ ++++ + + + + P Y +W + ++ N + + VP+ K W KN + Sbjct: 2 VSLDALWNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATK 61 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + E + G EI+ R + + + K+P ++ S Sbjct: 62 IV-----EVGYMLSGNEIIPRFI------------TGEEAEQEEVIEEKNPKVVAP---S 101 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P+ + L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTH Sbjct: 102 PLKKAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTH 156 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + ++ QPN +V Y+++E F F ++I++ A + RN+DLLL+DD+QF Sbjct: 157 LMHAIGHQMLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFF 216 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+L + KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 217 AEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLE 276 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 R +IL+ + A +L I ++ L ++A + ++ REL+GA LV +FA + + Sbjct: 277 TRTAILRKKAAAE-----RLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFAAMNSE 328 Query: 391 EIADELLSHLVNTGETKK----MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +I+ L + + T ++ K + I IQ VAK+Y+I DL +RV+++V PRQ+AM Sbjct: 329 DISTSLAADALKTLKSGKGHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAM 388 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IG FG +DHTTV+HA K+++++++ ++++ EV +K + Sbjct: 389 YLARELTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFL 442 >gi|329894830|ref|ZP_08270630.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC3088] gi|328922724|gb|EGG30058.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC3088] Length = 483 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 157/478 (32%), Positives = 257/478 (53%), Gaps = 41/478 (8%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE--H 101 +RL Q+ + +W L+ H+ P F+K ++K ++ + I ++ + E Sbjct: 26 ARLSEQIPDQQFRTWIAPLQLEQ-QDATCHILAPNRFIKDFVKEKFNDRIQEVLRSELGD 84 Query: 102 SRI--------QGV--EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 R+ QG VR+ SV++ A + S+ + T ++ + T Sbjct: 85 QRLDLQFGIANQGSTPRAFVRTTT--SVKQDAPNLSVVGKTDAPTTMTT------RNTGV 136 Query: 152 PVFGS-----PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 V G L + F +F+EG SN++AL AA+ + + Y NPLFI+ VG Sbjct: 137 QVEGGLSHQNNLVEHYSFESFVEGKSNQLALAAARQVKDNPGFAY-----NPLFIYGGVG 191 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ A+ NA + PN ++YL +E F+ A++ N + K R++D LLID Sbjct: 192 LGKTHLMHAVGNALRQDNPNANIIYLHSERFVADMVKALQLNAISDFKRYYRSVDALLID 251 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK Q EF H N+LL+ Q++ DR P E++ L+ R++SR G++V + Sbjct: 252 DIQFFAGKERSQEEFFHTFNALLEGGHQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVE 311 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + + + E+ +A+ + ++ REL+GA +++ F Sbjct: 312 PPELETRVAIL-----MKKAHQIGVFLPEDAAFFIAQRIRSNVRELEGALKRVIASAHFH 366 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 PI A + D L L + K++ +++IQR+VA++Y I DL+S RR R+V RPRQ Sbjct: 367 QKPIDIAMVKDSLKDLLAL--QDKQVSLDNIQRIVAEYYRIKVADLMSKRRSRSVARPRQ 424 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAM L+K +T S PEIG FG RDHTTVLHA RK+E++ T+ ++++V+ L R ++ Sbjct: 425 VAMALAKELTNHSLPEIGDSFGGRDHTTVLHACRKIEELKGTNNDIREDVKNLLRALT 482 >gi|319785621|ref|YP_004145096.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas suwonensis 11-1] gi|317464133|gb|ADV25865.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas suwonensis 11-1] Length = 445 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 166/483 (34%), Positives = 252/483 (52%), Gaps = 42/483 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + + +W + L+ +V L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPAEDVHTWLKPLQAEERPDGVV-LYAPNAFIVE 47 Query: 84 WIKNRYLETITKLFQE--EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS 141 ++ RYL I +L Q H +Q +EI R A E +++P++ +S Sbjct: 48 QVRERYLARIRELAQHFAGHLNVQ-LEIGSRPKA---PEPVSAAPAVHAGGTATRPVSSE 103 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P F LD +VF F+EG SN++ AA A+ NPL + Sbjct: 104 P-----------FNGNLDPHYVFDNFVEGRSNQLGRAAAWQAAQKPGDRAH----NPLLL 148 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHL+ A N + P RV+YL +E F F A+++ A K + ID Sbjct: 149 YGGTGLGKTHLMFAAGNEMRRLNPGARVLYLRSEQFYSAFFRALQEKTADQFKRQFQQID 208 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QF GK Q EF H NSL DS +Q++ DR P E++ L+PR++SRL G+ Sbjct: 209 ALLIDDIQFFAGKDRTQEEFFHTFNSLFDSRQQIIMTCDRYPREVDGLEPRLKSRLAWGL 268 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 SV + D+E R +I+ +++ + + +EV +A+ + ++ R+L+GA N L Sbjct: 269 SVAIDPPDFETRAAIV-----LAKARERGTVVPDEVAFLLAKKMRSNVRDLEGALNTLAA 323 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 R +F ++ E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ Sbjct: 324 RANFTGRAISVEFAQETLRDLLR-AQQQAIGIPNIQKTVADYYGLQVKDLLSKRRTRSLA 382 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++ETD L+++ + L R Sbjct: 383 RPRQVAMALTKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMETDGKLREDWDKLIRK 442 Query: 500 ISE 502 +SE Sbjct: 443 LSE 445 >gi|282934242|ref|ZP_06339519.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] gi|297205283|ref|ZP_06922679.1| ATPase [Lactobacillus jensenii JV-V16] gi|281301716|gb|EFA93983.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] gi|297149861|gb|EFH30158.1| ATPase [Lactobacillus jensenii JV-V16] Length = 455 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 158/482 (32%), Positives = 254/482 (52%), Gaps = 44/482 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + + + +++ + Y +WF+ K V + TN L +KN I Sbjct: 3 DLQKFWDYFNKQMRQEYNEVAYNAWFKNTK-------PVSYNKETNELVIAVKN----PI 51 Query: 94 TKLFQEEH---SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 K + E + IQ LP E P+ +P + P + ++++ Sbjct: 52 AKGYWEANLSTKLIQTAYAYGNFEVLPIFEVDGDEPTERFKAP------QPPKKVPERSV 105 Query: 151 SPVFGS------PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 SPV L+ ++ F TF++G N++A AA ++A+ Y NPLFI Sbjct: 106 SPVKDDFVAKNLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFY-----NPLFIFGG 160 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL Sbjct: 161 VGLGKTHLMQAIGHQMLCERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLL 220 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V Sbjct: 221 VDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVE 280 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R +IL+ + E L I+++ L ++A V+T+ REL+GA LV + Sbjct: 281 ITPPDLETRIAILRKK-----AESEGLVIDDDTLDYIASQVSTNIRELEGA---LVKVQA 332 Query: 384 FAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 A I A+I A + L+ L +++ ++I IQ +VA ++ + N+L +RVR +V Sbjct: 333 HATIEKADINVNLARDALTDLKLVQKSRGLQISKIQEVVANYFQTTVNELKGKKRVRQIV 392 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PRQ+AMYLS+ +T S P+IG+ FG +DHTTV+HA K+EK + TD +K V LK+L Sbjct: 393 VPRQIAMYLSRDLTDASLPKIGQEFGGKDHTTVMHAYEKIEKDIRTDAEIKSAVYELKQL 452 Query: 500 IS 501 + Sbjct: 453 LD 454 >gi|157144344|ref|YP_001451663.1| hypothetical protein CKO_00048 [Citrobacter koseri ATCC BAA-895] gi|157081549|gb|ABV11227.1| hypothetical protein CKO_00048 [Citrobacter koseri ATCC BAA-895] Length = 444 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 133/352 (37%), Positives = 210/352 (59%), Gaps = 13/352 (3%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTH Sbjct: 103 PTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTH 157 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 158 LLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF 217 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 218 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE 277 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 278 TRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAIT 332 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+ Sbjct: 333 IDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALA 391 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 392 KELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 443 >gi|261493280|ref|ZP_05989807.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496476|ref|ZP_05992856.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307679|gb|EEY09002.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311130|gb|EEY12306.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 449 Score = 239 bits (610), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 158/478 (33%), Positives = 263/478 (55%), Gaps = 37/478 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L Sbjct: 1 MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQASSE-NGELTLYAQNQFVENWVKDKFL 59 Query: 91 ETITKL--FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 IT+L F ++ + ++ V + E+ SP++ S +N Sbjct: 60 SEITELARFLAKNDNL----VVTLKVGIKPTEQPKVSPNLKNESSEFSNTG--------- 106 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 F + L+ F F++G SN++A AQ + VD+ G + NPL +A GLG Sbjct: 107 -----FKTGLNPNQTFDNFVQGRSNQLAKLVAQQV--VDNLGES--HCNPLSFYAGTGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLID 266 KTHLL AI N +KR P RV+Y+ E F AI +N A +K R++D+L+ID Sbjct: 158 KTHLLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMID 217 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL K +Q EF HLLNSL + KQ++ +D P ++ +D I+SRL GG+S + Sbjct: 218 DIQFLANKPKVQEEFLHLLNSLFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATIE 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHS 383 + E R +IL+ + A+ + D + E+ + + + T+ REL+GA N+++ + + Sbjct: 278 PPELETRVAILRQK-ALERGAD----LQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLT 332 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 PI T + E L L + + + IE+IQR+VA++Y I D+ S R R++ RPRQ Sbjct: 333 LRPI-TVDAVRETLQDLFASFDYL-ITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQ 390 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIGR FG RDHTTV+HA + + ++ +T+ ++++ L R +S Sbjct: 391 MAMALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLS 448 >gi|259502130|ref|ZP_05745032.1| DNA-directed DNA replication initiator protein [Lactobacillus antri DSM 16041] gi|259169943|gb|EEW54438.1| DNA-directed DNA replication initiator protein [Lactobacillus antri DSM 16041] Length = 435 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 218/364 (59%), Gaps = 16/364 (4%) Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 T KSP + T +P PL+ + F TF+ G N++A AA + AE GY Sbjct: 81 TGEQKSP--KPQATATPTSNIPLNPYYNFETFVVGDGNKIANAAALNAAE--RPGY---- 132 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 +NPLFI+ VGLGKTHL++AI N +K N RV Y+T+E F F ++I+ ++ Sbjct: 133 MNPLFIYGGVGLGKTHLMEAIGNYMLKINQNARVKYVTSEEFTNDFINSIQKRTTEQFRE 192 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 RN+DLLLIDD+QFL K Q EF + N+L D KQ+V +DR P E+ L R+ S Sbjct: 193 EYRNLDLLLIDDIQFLADKEGTQIEFFNTFNTLYDQQKQIVLTSDRMPREIPELQDRLVS 252 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G+ V + D E R +IL++++ E+ ++I + L ++A + T+ REL+GA Sbjct: 253 RFMWGMPVEITPPDLETRIAILRSKV-----EEDHIDIGNDTLNYIAGQIDTNVRELEGA 307 Query: 375 FNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 ++ V+ I+T +A L ++ + +++ +EDIQ+ VA YNI++ D++ + Sbjct: 308 LTKVQVYADLNNEIITPHLASRALKDFRHSAK-RQITVEDIQKQVASFYNITQADIIGKK 366 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 RV+ +V PRQ+AMYL++ +T S P+IG+ FG +DHTTVLHA+ K+E ++ D L+K++ Sbjct: 367 RVKQIVMPRQIAMYLTRELTDFSLPKIGKEFGGKDHTTVLHAIDKIEASIKDDSQLQKDI 426 Query: 494 ELLK 497 LK Sbjct: 427 HKLK 430 >gi|206895387|ref|YP_002246434.1| chromosomal replication initiator protein DnaA [Coprothermobacter proteolyticus DSM 5265] gi|206738004|gb|ACI17082.1| chromosomal replication initiator protein DnaA [Coprothermobacter proteolyticus DSM 5265] Length = 543 Score = 239 bits (610), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 148/456 (32%), Positives = 249/456 (54%), Gaps = 36/456 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ V + WF+ S+ + V +SV ++ K +I+ Y+ + +E RI Sbjct: 116 IQKYVSKPAFEMWFKDSAIDSLSEDKVTISVSSDTAKDYIEENYMPIV----KEALRRIT 171 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 G+ + V + + ++P + +P+ KS I L+ R+ F Sbjct: 172 GMALEVEVIV-----QKKNTPDVFSDNPVKKGKPKSLI-------------RLNPRYTFD 213 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ- 224 F+ G SNR+A A+++AE R NPLFI VGLGKTHLL AI N +++Q Sbjct: 214 EFVVGDSNRLAYAGARAVAENPGK-----RFNPLFIWGGVGLGKTHLLHAIGNYLLQQQE 268 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P+++V+Y+TAE F +I+ N + + R +D+LLIDD+QF+ GK Q EF H Sbjct: 269 PDMQVLYITAEEFTNEMVESIKKNSPEDFRAHYRTVDVLLIDDIQFIAGKEATQTEFFHT 328 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L + KQ+V +D PP EL L+ R+RSR Q G++V + D+E R +IL+ + + Sbjct: 329 FNTLYQAGKQIVITSDHPPQELTLLEDRLRSRFQQGLTVDIQRPDFETRVAILERK---A 385 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVN 402 QKE L++ EV+ +A V T+ REL+GA ++ + + +T +A + L VN Sbjct: 386 QKEG--LDVPSEVIEFIAHAVATNIRELEGALTKVTALATLQNVPMTLGLAKQALGD-VN 442 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 T ++ + + I VA ++ ++ DL S++R + +V PRQ+AMYL + T S+PEI Sbjct: 443 TNQSAVLNAQTIAEQVASYFGMTLEDLKSSKRNQDLVMPRQIAMYLIRQYTDMSYPEIAA 502 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 F +DHTTV++A+ K++ +++++ V +K+ Sbjct: 503 FFNKKDHTTVMYAITKIKDAQLNNVSIRHYVNDIKK 538 >gi|134301170|ref|YP_001121138.1| chromosomal replication initiation protein [Francisella tularensis subsp. tularensis WY96-3418] gi|166201884|sp|A4IVR6|DNAA_FRATW RecName: Full=Chromosomal replication initiator protein DnaA gi|134048947|gb|ABO46018.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. tularensis WY96-3418] Length = 491 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 225/396 (56%), Gaps = 20/396 (5%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 + V P + K ++S + + ++ +I K+ FG PL ++VF +F+ G Sbjct: 110 TKVVQEPKISKKSNSKDFSSSQEL-FGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVG 168 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 +N++A AA ++ +L NPLFI+ GLGKTHL+QAI N + + PN ++ Sbjct: 169 DANKIARAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKI 222 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 +Y +E F+ + ++IR + R+ D+LLIDD+QF+ GK EF H N+L Sbjct: 223 IYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALY 282 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R +IL + + D Sbjct: 283 ENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDL 337 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA---PILTAEIADELLSHLVNTGE 405 + E +A V T+ REL+GA N+++ F P T E+A L ++ E Sbjct: 338 GQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDP--TIEVAQACLRDVIKIQE 395 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T S PEIG FG Sbjct: 396 -KKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFG 454 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 455 GRDHTTVMHAVKAITKLRQSNTSISDDYELLLNKIS 490 >gi|118496616|ref|YP_897666.1| chromosomal replication initiator protein [Francisella tularensis subsp. novicida U112] gi|166201883|sp|A0Q3U7|DNAA_FRATN RecName: Full=Chromosomal replication initiator protein DnaA gi|118422522|gb|ABK88912.1| chromosomal replication initiator protein [Francisella novicida U112] Length = 491 Score = 239 bits (609), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 158/496 (31%), Positives = 253/496 (51%), Gaps = 54/496 (10%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS-- 102 ++K + Y +W + + N+ + + K IK++Y I QE H Sbjct: 10 KIKKNLSTFEYKTWIKPIHVEQN-SNLFTVYCNNEYFKKHIKSKYGNLILSTIQECHGND 68 Query: 103 --------RIQGVEILVRSVALP--------SVE--------KTASSPSITKLSPINT-- 136 + G +I A P SVE K P I+K S Sbjct: 69 LIIEYSNKKFSGKKITEVITAGPQANFFSTTSVEIKDESEDTKVVQEPKISKKSNTKDFS 128 Query: 137 ------NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 ++ +I K+ FG PL ++VF +F+ G +N++A AA ++ Sbjct: 129 SSQELFGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS------ 182 Query: 191 YTTVRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 +L NPLFI+ GLGKTHL+QAI N + + PN +++Y +E F+ + ++IR Sbjct: 183 INPGKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQD 242 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+E+E L Sbjct: 243 QDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGL 302 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ SR G++V + + D E R +IL + + D + E +A V T+ Sbjct: 303 EERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNV 357 Query: 369 RELDGAFNQLVFRHSFA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 REL+GA N+++ F P T E+A L ++ E KK++I++IQ++VA Y I Sbjct: 358 RELEGALNRVLTTSKFNHKDP--TIEVAQACLRDVIKIQE-KKVKIDNIQKVVADFYRIR 414 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ ++ Sbjct: 415 VKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQS 474 Query: 486 DITLKKEVELLKRLIS 501 + ++ + ELL IS Sbjct: 475 NTSISDDYELLLDKIS 490 >gi|66766353|ref|YP_241115.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. 8004] gi|81307653|sp|Q4V0S8|DNAA_XANC8 RecName: Full=Chromosomal replication initiator protein DnaA gi|66571685|gb|AAY47095.1| chromosomal replication initiator [Xanthomonas campestris pv. campestris str. 8004] Length = 442 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 162/482 (33%), Positives = 245/482 (50%), Gaps = 43/482 (8%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D RCLE RL+ + P+ +W + L+ +IV L P F+ Sbjct: 1 MDAWPRCLE------------RLEAEFPPEDVHTWLKPLQAEDRGDSIV-LYAPNAFIVE 47 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++ RYL I +L + G + +V S P +P ++ Sbjct: 48 QVRERYLPRIRELL----AYFAGNGEVALAVG--------SRPR----APEPLPAPQAVA 91 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIH 202 F LDS + F+ F+EG SN++ L AA Q+ + + NPL ++ Sbjct: 92 SAPAAAPIVPFAGNLDSHYTFANFVEGRSNQLGLAAAIQAAQKPGDRAH-----NPLLLY 146 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+ A NA + P +V+YL +E F A+ D K ID Sbjct: 147 GSTGLGKTHLMFAAGNALRQANPAAKVMYLRSEQFFSAMIRALHDKAMDQFKRQFHQIDA 206 Query: 263 LLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF G Q EF H N+L D + ++ DR P E+E L+PR++SRL G+S Sbjct: 207 LLIDDIQFFAGMDRTQEEFFHTFNALFDGRQHIILTCDRYPREVEGLEPRLKSRLAWGLS 266 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +I+ +++ + I ++V +A+ + ++ R+L+GA N LV R Sbjct: 267 VAIDPPDFETRAAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVAR 321 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F +T E A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ R Sbjct: 322 ANFTGRSITVEFAQETLRDLLRA-QQQAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLAR 380 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAM L+K +T S PEIG F RDHTTVLHA R++ ++E D L+++ E L R + Sbjct: 381 PRQVAMALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKL 440 Query: 501 SE 502 SE Sbjct: 441 SE 442 >gi|320105247|ref|YP_004180837.1| chromosomal replication initiator protein DnaA [Terriglobus saanensis SP1PR4] gi|319923768|gb|ADV80843.1| chromosomal replication initiator protein DnaA [Terriglobus saanensis SP1PR4] Length = 478 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/466 (33%), Positives = 255/466 (54%), Gaps = 28/466 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ ++ + +W + +F + +++ +P++ + I +RY + + + + I Sbjct: 21 LEKKINRQSFDTWLKPTRFSHLNGRTLYVRIPSSEFQH-IGDRYADLVQEAIDKLELEID 79 Query: 106 GVEILVRSVALPSVEKT------ASSPSIT---KLSPINTNISKSPIILGKQTISPVF-- 154 V+ V PS+ KT A PS + LSP N + +P T F Sbjct: 80 DVK-FVTPQDDPSLPKTREDGGFAPVPSHSMQAPLSPRNGRLGGAPPPPAPTTEQARFDW 138 Query: 155 --GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L++R++F F+ GS N+ A A+Q++AE S Y NPLF++ VG+GKTHL Sbjct: 139 NTASQLNARYLFDNFVIGSGNQFAHAASQAVAERPSKAY-----NPLFLYGGVGMGKTHL 193 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI + +R P+ + Y++ E F +++R + +D R +D+LLIDD+QFL Sbjct: 194 MQAIGHEVKRRNPHASISYVSGEKFTNEMINSVRYDKMTTFRDKFRTVDVLLIDDIQFLA 253 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L +S KQ+V A+DRPP EL + R+RSR + G+ + D E Sbjct: 254 GKERTQEEFFHTFNALHESMKQIVIASDRPPKELADFEDRLRSRFEWGLIADIQPPDLET 313 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 + +IL+ + ++ E L I+ V + VA V T+ REL+GA +L+ S + +T Sbjct: 314 KVAILQKK---AESEQTVLPID--VALFVASNVRTNVRELEGALVRLLAWCSLHGVEITL 368 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A + L ++T + +K+ IE IQR A+ + + ++L R++V PRQ+AMYL+K Sbjct: 369 PTAQQCLKQFIDT-QVRKITIEAIQRATAEQFGMRVSELKQKNNSRSIVVPRQIAMYLAK 427 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 MT S PEIGR+FG + HTTV+H++ K+++ TD +L + L Sbjct: 428 QMTEASLPEIGRQFGGKHHTTVMHSISKIDEQRRTDKSLNSTINKL 473 >gi|187930914|ref|YP_001890898.1| chromosomal replication initiation protein [Francisella tularensis subsp. mediasiatica FSC147] gi|208780099|ref|ZP_03247442.1| chromosomal replication initiator protein DnaA [Francisella novicida FTG] gi|224458007|ref|ZP_03666480.1| chromosomal replication initiator protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254875662|ref|ZP_05248372.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis MA00-2987] gi|290953775|ref|ZP_06558396.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica URFT1] gi|295312853|ref|ZP_06803584.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica URFT1] gi|187711823|gb|ACD30120.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. mediasiatica FSC147] gi|208744103|gb|EDZ90404.1| chromosomal replication initiator protein DnaA [Francisella novicida FTG] gi|254841661|gb|EET20097.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis MA00-2987] Length = 463 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 225/396 (56%), Gaps = 20/396 (5%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 + V P + K ++S + + ++ +I K+ FG PL ++VF +F+ G Sbjct: 82 TKVVQEPKISKKSNSKDFSSSQEL-FGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVG 140 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 +N++A AA ++ +L NPLFI+ GLGKTHL+QAI N + + PN ++ Sbjct: 141 DANKIARAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKI 194 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 +Y +E F+ + ++IR + R+ D+LLIDD+QF+ GK EF H N+L Sbjct: 195 IYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALY 254 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R +IL + + D Sbjct: 255 ENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDL 309 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA---PILTAEIADELLSHLVNTGE 405 + E +A V T+ REL+GA N+++ F P T E+A L ++ E Sbjct: 310 GQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDP--TIEVAQACLRDVIKIQE 367 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T S PEIG FG Sbjct: 368 -KKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFG 426 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 427 GRDHTTVMHAVKAITKLRQSNTSISDDYELLLDKIS 462 >gi|227514119|ref|ZP_03944168.1| DNA-directed DNA replication initiator protein [Lactobacillus fermentum ATCC 14931] gi|260662538|ref|ZP_05863433.1| chromosomal replication initiator protein DnaA [Lactobacillus fermentum 28-3-CHN] gi|227087490|gb|EEI22802.1| DNA-directed DNA replication initiator protein [Lactobacillus fermentum ATCC 14931] gi|260553229|gb|EEX26172.1| chromosomal replication initiator protein DnaA [Lactobacillus fermentum 28-3-CHN] Length = 438 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 135/344 (39%), Positives = 207/344 (60%), Gaps = 13/344 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PL+ + F TFIEG SN +A +A + +E Y NPL I+ VGLGKTHL+QA Sbjct: 101 TPLNPEYTFQTFIEGRSNMMAYASAFAASESPGDQY-----NPLLIYGGVGLGKTHLMQA 155 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IAN P++R+ Y+T+E FM F ++I+ + R++D LL+DD+QF K Sbjct: 156 IANNMKFHNPSVRIKYVTSENFMNDFVNSIKSGTQEEFRREYRDLDALLVDDIQFFASKG 215 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N L D+ KQ+V +D+ P E+ +L R+ SR GV V + E R + Sbjct: 216 ETQTEFFNTFNVLYDNKKQIVLTSDKDPREIPNLTARLVSRFMWGVPVEITSPALETRIA 275 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIA 393 ILK S+ E+ L++ +VL VA+ + T+ REL+GA ++ VF +T ++A Sbjct: 276 ILK-----SKAEEEHLDVPNDVLNFVAQRINTNVRELEGALMRIRVFSELHQQPITLKLA 330 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L +V ET + I+ IQ+ VA +YNI+++D+ +R + +V PRQ+AMYLS+ +T Sbjct: 331 TEALQGMVANTETT-VTIDLIQKRVATYYNINQSDITGKKRTKNIVVPRQIAMYLSRELT 389 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 S P+IG+ FG +DHTTVLHA+ K+E+ ++ D L+ ++ LK Sbjct: 390 DNSLPKIGKEFGGKDHTTVLHAIDKIERQVQEDARLQGDLVKLK 433 >gi|328676079|gb|AEB26949.1| Chromosomal replication initiator protein DnaA [Francisella cf. novicida Fx1] Length = 463 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 244/471 (51%), Gaps = 53/471 (11%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS----------RIQGVEILVRSVALP-- 117 N+ + + K IK++Y I QE H + G +I A P Sbjct: 6 NLFTVYCNNEYFKKHIKSKYGNLILSTIQECHGNDLIIEYSNKKFSGEKITEVITAGPQA 65 Query: 118 ------SVE--------KTASSPSITKLSPINT--------NISKSPIILGKQTISPVFG 155 SVE K P I+K S ++ +I K+ FG Sbjct: 66 NFFSTTSVEIKDESEDTKVVQEPKISKKSNTKDFSSSQELFGFDEAMLITAKEDEEYSFG 125 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQ 214 PL ++VF +F+ G +N++A AA ++ +L NPLFI+ GLGKTHL+Q Sbjct: 126 LPLKEKYVFDSFVVGDANKIARAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQ 179 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + PN +++Y +E F+ + ++IR + R+ D+LLIDD+QF+ GK Sbjct: 180 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 239 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R Sbjct: 240 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 299 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA---PILTA 390 +IL + + D + E +A V T+ REL+GA N+++ F P T Sbjct: 300 AIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDP--TI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A L ++ E KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ Sbjct: 353 EVAQACLRDVIKIQE-KKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLAR 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 412 ELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTSISDDYELLLDKIS 462 >gi|56707188|ref|YP_169084.1| chromosomal replication initiation protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110669658|ref|YP_666215.1| chromosomal replication initiation protein [Francisella tularensis subsp. tularensis FSC198] gi|254368432|ref|ZP_04984449.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica FSC022] gi|254371402|ref|ZP_04987403.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis FSC033] gi|254372003|ref|ZP_04987496.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. novicida GA99-3549] gi|254375145|ref|ZP_04990625.1| chromosomal replication initiator protein dnaA [Francisella novicida GA99-3548] gi|56603680|emb|CAG44634.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis SCHU S4] gi|110319991|emb|CAL08017.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis FSC198] gi|151569641|gb|EDN35295.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis FSC033] gi|151569734|gb|EDN35388.1| chromosomal replication initiator protein dnaA [Francisella novicida GA99-3549] gi|151572863|gb|EDN38517.1| chromosomal replication initiator protein dnaA [Francisella novicida GA99-3548] gi|157121326|gb|EDO65527.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica FSC022] gi|282158287|gb|ADA77678.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis NE061598] Length = 506 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 140/396 (35%), Positives = 224/396 (56%), Gaps = 22/396 (5%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 + V P + K ++S + + ++ +I K+ FG PL ++VF +F+ G Sbjct: 126 KVVQEPKISKKSNSKDFSSSQEL-FGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGD 184 Query: 172 SNRVALTAAQ--SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 +N++A AA SI H NPLFI+ GLGKTHL+QAI N + + PN ++ Sbjct: 185 ANKIARAAAMQVSINPGKLH-------NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKI 237 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 +Y +E F+ + ++IR + R+ D+LLIDD+QF+ GK EF H N+L Sbjct: 238 IYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALY 297 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R +IL + + D Sbjct: 298 ENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDL 352 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA---PILTAEIADELLSHLVNTGE 405 + E +A V T+ REL+GA N+++ F P T E+A L ++ E Sbjct: 353 GQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDP--TIEVAQACLRDVIKIQE 410 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T S PEIG FG Sbjct: 411 -KKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFG 469 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 470 GRDHTTVMHAVKAITKLRQSNTSISDDYELLLDKIS 505 >gi|227550640|ref|ZP_03980689.1| DNA-directed DNA replication initiator protein [Enterococcus faecium TX1330] gi|257888095|ref|ZP_05667748.1| chromosomal replication initiator protein [Enterococcus faecium 1,141,733] gi|257896287|ref|ZP_05675940.1| chromosomal replication initiator protein [Enterococcus faecium Com12] gi|257899271|ref|ZP_05678924.1| chromosomal replication initiator protein [Enterococcus faecium Com15] gi|293379368|ref|ZP_06625512.1| chromosomal replication initiator protein DnaA [Enterococcus faecium PC4.1] gi|293572718|ref|ZP_06683682.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E980] gi|227180241|gb|EEI61213.1| DNA-directed DNA replication initiator protein [Enterococcus faecium TX1330] gi|257824149|gb|EEV51081.1| chromosomal replication initiator protein [Enterococcus faecium 1,141,733] gi|257832852|gb|EEV59273.1| chromosomal replication initiator protein [Enterococcus faecium Com12] gi|257837183|gb|EEV62257.1| chromosomal replication initiator protein [Enterococcus faecium Com15] gi|291607210|gb|EFF36568.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E980] gi|292641891|gb|EFF60057.1| chromosomal replication initiator protein DnaA [Enterococcus faecium PC4.1] Length = 444 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/474 (31%), Positives = 256/474 (54%), Gaps = 39/474 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLE 91 V+ ++++ + + + + P Y +W + ++ N + + VP+ K W KN + Sbjct: 2 VSLDALWNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATK 61 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + E + G EI+ R + + + K+P + S Sbjct: 62 IV-----EVGYMLSGNEIIPRFI------------TGEEAEQEEVVEEKNPKVAAP---S 101 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P+ + L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTH Sbjct: 102 PLKKAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTH 156 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + ++ QPN +V Y+++E F F ++I++ A + RN+DLLL+DD+QF Sbjct: 157 LMHAIGHQMLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFF 216 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+L + KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 217 AEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLE 276 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 R +IL+ + A +L I ++ L ++A + ++ REL+GA LV +FA + + Sbjct: 277 TRTAILRKKAAAE-----RLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFAAMNSE 328 Query: 391 EIADELLSHLVNTGETKK----MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +I+ L + + T ++ K + I IQ VAK+Y+I DL +RV+++V PRQ+AM Sbjct: 329 DISTSLAADALKTLKSGKGHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAM 388 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IG FG +DHTTV+HA K+++++++ ++++ EV +K + Sbjct: 389 YLARELTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFL 442 >gi|169656467|ref|YP_001427435.2| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|61212486|sp|Q5NIQ8|DNAA_FRATT RecName: Full=Chromosomal replication initiator protein DnaA gi|189044725|sp|A7N926|DNAA_FRATF RecName: Full=Chromosomal replication initiator protein DnaA gi|164551535|gb|ABU60479.2| chromosomal replication initiator protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 491 Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 138/396 (34%), Positives = 225/396 (56%), Gaps = 20/396 (5%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 + V P + K ++S + + ++ +I K+ FG PL ++VF +F+ G Sbjct: 110 TKVVQEPKISKKSNSKDFSSSQEL-FGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVG 168 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 +N++A AA ++ +L NPLFI+ GLGKTHL+QAI N + + PN ++ Sbjct: 169 DANKIARAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKI 222 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 +Y +E F+ + ++IR + R+ D+LLIDD+QF+ GK EF H N+L Sbjct: 223 IYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALY 282 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R +IL + + D Sbjct: 283 ENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDL 337 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA---PILTAEIADELLSHLVNTGE 405 + E +A V T+ REL+GA N+++ F P T E+A L ++ E Sbjct: 338 GQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDP--TIEVAQACLRDVIKIQE 395 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T S PEIG FG Sbjct: 396 -KKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFG 454 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 455 GRDHTTVMHAVKAITKLRQSNTSISDDYELLLDKIS 490 >gi|184154477|ref|YP_001842817.1| chromosomal replication initiation protein DnaA [Lactobacillus fermentum IFO 3956] gi|226735821|sp|B2GEU8|DNAA_LACF3 RecName: Full=Chromosomal replication initiator protein DnaA gi|183225821|dbj|BAG26337.1| chromosomal replication initiation protein DnaA [Lactobacillus fermentum IFO 3956] gi|299782686|gb|ADJ40684.1| Chromosomal replication initiator protein dnaA [Lactobacillus fermentum CECT 5716] Length = 438 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 135/344 (39%), Positives = 207/344 (60%), Gaps = 13/344 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PL+ + F TFIEG SN +A +A + +E Y NPL I+ VGLGKTHL+QA Sbjct: 101 TPLNPEYTFQTFIEGRSNMMAYASAFAASESPGDQY-----NPLLIYGGVGLGKTHLMQA 155 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IAN P++R+ Y+T+E FM F ++I+ + R++D LL+DD+QF K Sbjct: 156 IANNMKFHNPSVRIKYVTSENFMNDFVNSIKSGTQEEFRREYRDLDALLVDDIQFFASKG 215 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N L D+ KQ+V +D+ P E+ +L R+ SR GV V + E R + Sbjct: 216 ETQTEFFNTFNVLYDNKKQIVLTSDKDPREIPNLTERLVSRFMWGVPVEITSPALETRIA 275 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIA 393 ILK S+ E+ L++ +VL VA+ + T+ REL+GA ++ VF +T ++A Sbjct: 276 ILK-----SKAEEEHLDVPNDVLNFVAQRINTNVRELEGALMRIRVFSELHQQPITLKLA 330 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L +V ET + I+ IQ+ VA +YNI+++D+ +R + +V PRQ+AMYLS+ +T Sbjct: 331 TEALQGMVANTETT-VTIDLIQKRVATYYNINQSDITGKKRTKNIVVPRQIAMYLSRELT 389 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 S P+IG+ FG +DHTTVLHA+ K+E+ ++ D L+ ++ LK Sbjct: 390 DNSLPKIGKEFGGKDHTTVLHAIDKIERQVQEDARLQGDLVKLK 433 >gi|196230261|ref|ZP_03129124.1| chromosomal replication initiator protein DnaA [Chthoniobacter flavus Ellin428] gi|196225858|gb|EDY20365.1| chromosomal replication initiator protein DnaA [Chthoniobacter flavus Ellin428] Length = 464 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 151/483 (31%), Positives = 260/483 (53%), Gaps = 40/483 (8%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 VDK +++ +++++K +V D Y WF+ ++ + + L VP + + WI Sbjct: 6 VDKSLDSAGLNALWAEITAQIKTEVSADSYDRWFRDIEPVELDEKTLTLRVPNSIFQLWI 65 Query: 86 KNRYLETITKLFQEEHSRIQGVEILV----RSVALPSVEKTASSPSITKLSPINTNISKS 141 +N Y + ++ V +LV R++ ++T +P L+P ++ Sbjct: 66 ENNY-----------QAHLRSVVMLVLGSPRNIHYVYQDETKIAPPPKVLTP-----AQK 109 Query: 142 PIILGKQTISPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 P + P G S + R F +F+ G++N+ A A +++++ + Y NPLF Sbjct: 110 PKAEPAEPRMPAGGTSGFNPRNNFDSFVVGTNNQFAHAACKAVSDAPARTY-----NPLF 164 Query: 201 IHASVGLGKTHLLQAIANASI-KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ VGLGKTHL+ AI +A + KR+P +VVY+T+E F F AI++N + + R Sbjct: 165 IYGGVGLGKTHLMHAIGHAILSKRKPG-KVVYITSEAFTNEFIDAIQNNTLIKFRKRYRQ 223 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 D+LLIDD+QFL K Q EF H N+L D KQ+V ++DRPPSE+ +L+ R+ SR + Sbjct: 224 ADVLLIDDIQFLADKGRTQEEFFHTFNTLFDGHKQIVLSSDRPPSEIANLETRLVSRFEW 283 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++ L D E R +IL+ + + ++ +++E++ +A + T+ R L+GA ++ Sbjct: 284 GLTAELQAPDIETRVAILRKK-----AQSVEIQLDDEIIQFLAARIRTNVRRLEGALMRV 338 Query: 379 V----FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 H P + E + LL +++ + + I+ IQ+ VA+H+++ D+ S RR Sbjct: 339 ASYVSLSHGRLPGM--EKIEHLLKDILHEEARRAITIDQIQKRVAEHFDVRLADMTSKRR 396 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + PRQ+AM+L++ +T S EIG FG RDH TVLHA R V + + D ++ V Sbjct: 397 PANIAFPRQIAMFLARELTKTSLNEIGEAFGGRDHGTVLHAHRLVREKMTKDERTRQIVS 456 Query: 495 LLK 497 L+ Sbjct: 457 FLE 459 >gi|259047905|ref|ZP_05738306.1| DNA replication initiator protein, ATPase [Granulicatella adiacens ATCC 49175] gi|259035439|gb|EEW36694.1| DNA replication initiator protein, ATPase [Granulicatella adiacens ATCC 49175] Length = 456 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 139/359 (38%), Positives = 208/359 (57%), Gaps = 17/359 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 P+I+ N+NI ++ G SP S L+ ++ F TFI G N++A AA+ Sbjct: 87 PTISSFQSNNSNIEETQTT-GLSHPSPTAIEEDSHLNPKYTFDTFIIGKGNQMATAAARY 145 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +AE Y NPLF + VGLGKTHL+QAI N K P RV Y+T+E FM Sbjct: 146 VAENPGTAY-----NPLFFYGGVGLGKTHLMQAIGNDYKKNHPTARVKYVTSEEFMNEMI 200 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 ++I ++ RN+D+LL+DD+QFL K Q EF H N+L ++ KQ+V +DR Sbjct: 201 ASIGSKTPQEFRNRYRNVDILLVDDIQFLAAKEATQEEFFHTFNALFNNQKQIVLTSDRQ 260 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P+E+++L R+ SR G+ V + D E R +IL+N+ + NI +VL +VA Sbjct: 261 PTEIKALQERLVSRFVSGLPVDITPPDLETRIAILQNK-----AQSLGFNIPIDVLSYVA 315 Query: 362 RTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + ++ REL+GA +L + ++ ++A E L +L+ G+ K + I DIQ VAK Sbjct: 316 GHIQSNVRELEGALMRLQAYSVMVGEDISTDLAAEALKNLLPGGKEKLLSIHDIQSAVAK 375 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +YNI+ D+ +R +T+V+PRQ+AMYLS+ +T S +IG FG RDH+TVLHA K+ Sbjct: 376 YYNITVEDIKGKKRTKTMVQPRQIAMYLSRELTGSSLQKIGSDFG-RDHSTVLHAYEKI 433 >gi|194323922|ref|ZP_03057697.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. novicida FTE] gi|194321819|gb|EDX19302.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. novicida FTE] Length = 463 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 244/471 (51%), Gaps = 53/471 (11%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS----------RIQGVEILVRSVALP-- 117 N+ + + K IK++Y I QE H + G +I A P Sbjct: 6 NLFTVYCNNEYFKKHIKSKYGNLILSTIQECHGNDLIIEYSNKKFSGKKITEVITAGPQA 65 Query: 118 ------SVE--------KTASSPSITKLSPINT--------NISKSPIILGKQTISPVFG 155 SVE K P I+K S ++ +I K+ FG Sbjct: 66 NFFSTTSVEIKDESEDTKVVQEPKISKKSNTKDFSSSQELFGFDEAMLITAKEDEEYSFG 125 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQ 214 PL ++VF +F+ G +N++A AA ++ +L NPLFI+ GLGKTHL+Q Sbjct: 126 LPLKEKYVFDSFVVGDANKIARAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQ 179 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + PN +++Y +E F+ + ++IR + R+ D+LLIDD+QF+ GK Sbjct: 180 AIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 239 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R Sbjct: 240 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 299 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA---PILTA 390 +IL + + D + E +A V T+ REL+GA N+++ F P T Sbjct: 300 AIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDP--TI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A L ++ E KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ Sbjct: 353 EVAQACLRDVIKIQE-KKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLAR 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 412 ELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTSISDDYELLLDKIS 462 >gi|294619745|ref|ZP_06699150.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1679] gi|291594015|gb|EFF25484.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1679] Length = 444 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 147/474 (31%), Positives = 257/474 (54%), Gaps = 39/474 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLE 91 V+ ++++ + + + + P Y +W + ++ N + + VP+ K W KN + Sbjct: 2 VSLDALWNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATK 61 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + E + G EI+ R + + + K+P ++ S Sbjct: 62 IV-----EVGYMLSGNEIIPRFI------------TGEEAEQEEVIEEKNPKVVAP---S 101 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P+ + L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTH Sbjct: 102 PLKKAMLNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTH 156 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + ++ QPN +V Y+++E F F ++I++ A + RN+DLLL+DD+QF Sbjct: 157 LMHAIGHQMLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFF 216 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+L + KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 217 AEKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLE 276 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 R +IL+ + A +L I ++ L ++A + ++ REL+GA LV +FA + + Sbjct: 277 TRTAILRKKAAAE-----RLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFAAMNSE 328 Query: 391 EIADELLSHLVNTGETKK----MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +I+ L + + T ++ K + I IQ VAK+Y+I D+ +RV+++V PRQ+AM Sbjct: 329 DISTSLAADALKTLKSGKGHPQLSILQIQEEVAKYYHIQLKDIKGKKRVKSIVVPRQIAM 388 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IG FG +DHTTV+HA K+++++++ ++++ EV +K + Sbjct: 389 YLARELTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFL 442 >gi|94495384|ref|ZP_01301964.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. SKA58] gi|94424772|gb|EAT09793.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. SKA58] Length = 466 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 160/471 (33%), Positives = 254/471 (53%), Gaps = 30/471 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQ--RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 +S ++++ + L+ VG ++ W + RL + + L V T+F ++ ++ + Sbjct: 20 GLDSAWSVIRTGLRRDVGARLFDQWLKPARLGDYCPESQTLDLLVATDFSANFVSGQFGD 79 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + ++ A P + +++P +I P++ Sbjct: 80 RLRMAWRSAGV--------GVREVRVRRAPDACGPRLLEVAP---SIQTEPVME-----E 123 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + S R F+ G +NR+A +AAQ++A G R PLFIH G GKTH Sbjct: 124 AIVASNFQPRHRLDDFVVGDTNRLAWSAAQAMA-----GEAQPRFTPLFIHGGTGQGKTH 178 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL IA A P V+Y++AE FM F +A+R N + K LR LLLIDD+QF+ Sbjct: 179 LLHGIAAAFSAHSPKAPVLYMSAERFMMEFVNAMRANETMAFKARLRAARLLLIDDIQFI 238 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H +N L+DS ++V ADR P LES+D RI SRL GG+ + D + Sbjct: 239 AGKGSTQEEFLHTINDLIDSGARIVVTADRAPQMLESIDARILSRLAGGLVADIRPADLD 298 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILT 389 +R +IL+++ A++ + + + V+ +AR++ ++ REL+GAFN+LV + + Sbjct: 299 LRLAILESKRALAGD----MIVPDMVIDFLARSIRSNVRELEGAFNKLVAYGQLTGRAVD 354 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + A ++L+ V +++ +++IQ+ A H+ I ++ S RR R V RPRQVAMYL+ Sbjct: 355 LDFAQQMLADAVRA-NARRITVDEIQKACAAHFKIDPAEMRSKRRARAVARPRQVAMYLA 413 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K MTPRS PEIGR FG RDH+TV+HAVR +E + ET + +V L+RL+ Sbjct: 414 KKMTPRSLPEIGRIFGGRDHSTVIHAVRTIEALRETSPDMDADVRALQRLL 464 >gi|328675183|gb|AEB27858.1| Chromosomal replication initiator protein DnaA [Francisella cf. novicida 3523] Length = 491 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 139/394 (35%), Positives = 224/394 (56%), Gaps = 22/394 (5%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 V P + K +++ ++ + ++ +I K+ FG PL ++VF +F+ G +N Sbjct: 113 VQEPKISKKSNTKDLSSSQEL-FGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDAN 171 Query: 174 RVALTAAQ--SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 ++A AA SI H NPLFI+ GLGKTHL+QAI N + + PN +++Y Sbjct: 172 KIARAAAMQVSINPGKLH-------NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIY 224 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 +E F+ + ++IR + R+ D+LLIDD+QF+ GK EF H N+L ++ Sbjct: 225 TNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYEN 284 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R +IL + + D Sbjct: 285 GKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQ 339 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA---PILTAEIADELLSHLVNTGETK 407 + E +A V T+ REL+GA N+++ F P T E+A L ++ E K Sbjct: 340 KLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNYKDP--TIEVAQACLRDVIKIQE-K 396 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 K++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T S PEIG FG R Sbjct: 397 KVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGR 456 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 457 DHTTVMHAVKAITKLRQSNTSISDDYELLLDKIS 490 >gi|317120850|ref|YP_004100853.1| chromosomal replication initiator protein DnaA [Thermaerobacter marianensis DSM 12885] gi|315590830|gb|ADU50126.1| chromosomal replication initiator protein DnaA [Thermaerobacter marianensis DSM 12885] Length = 459 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 156/451 (34%), Positives = 252/451 (55%), Gaps = 25/451 (5%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +W + + S+ + + L+VP F + W+ R I ++ +E++V Sbjct: 26 YEAWLRNTRPVSLEGDRLVLAVPNQFARDWVLERCSGAIVDSLRQVVGHAVRLEVVVEPQ 85 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 P+ +TA++ P S + +T+S PL+ ++ F TF+ GS NR Sbjct: 86 PAPAAAQTAATTEAPLAPPPAAAASDAGS--SWRTLS----QPLNPKYTFDTFVTGSGNR 139 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A AA ++AE + Y NPLFI+ VGLGKTHL+QA+A+ +++ + RV Y++ Sbjct: 140 LAHAAALAVAEAPARTY-----NPLFIYGGVGLGKTHLMQAVAHHVLRKHGS-RVAYVSC 193 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F +AIRD L ++ RN+D+LL+DD+QFL GK Q EF H N+L ++ +Q Sbjct: 194 ETFTNEMINAIRDGKTLEFRNRYRNVDVLLVDDIQFLAGKESTQEEFFHTFNALHEANRQ 253 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V ++DRPP E+ +L+ R+RSR + G+ + D+E R +IL+ + + KL + Sbjct: 254 IVISSDRPPKEIPTLEERLRSRFEWGLISDIQPPDFETRVAILRKKAQLE-----KLRVP 308 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKM 409 ++V+ +A + T+ REL+GA +LV +FA + + ++A E+L ++ K+ Sbjct: 309 DDVIAFIAERIDTNIRELEGALIRLV---AFASLTNHHIDLDLAQEVLKDILPPPRANKV 365 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I IQ +VA++Y + DL + RR R + PRQVAMYL + +T S P IG FG RDH Sbjct: 366 TIARIQEVVAEYYGVKVRDLKARRRTRAIAFPRQVAMYLCRELTEASLPRIGEEFGGRDH 425 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TTVLHA K+ L D L ++++ L LI Sbjct: 426 TTVLHAYEKIRHDLRNDPQLGRQIKELMDLI 456 >gi|332685535|ref|YP_004455309.1| chromosomal replication initiator protein DnaA [Melissococcus plutonius ATCC 35311] gi|332369544|dbj|BAK20500.1| chromosomal replication initiator protein DnaA [Melissococcus plutonius ATCC 35311] Length = 447 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 155/489 (31%), Positives = 257/489 (52%), Gaps = 53/489 (10%) Query: 22 PNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL 81 P+V+ + LEV +SI ++ S + +W + + +N + L VP+ Sbjct: 2 PDVETFWKNLEVAYQSILSVPS-----------FDAWIKTTHPLKLENNQLWLEVPSAVH 50 Query: 82 K-AWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS---PINTN 137 K W KN + + F ++ G E++ V +++ K S P +T Sbjct: 51 KNYWEKNLAAKIVEMGF-----KLTGTEVIPFFVVAGEMQENLVEEKKGKKSLEEPFDTQ 105 Query: 138 ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 K+ L+ ++ F TF+ G N++A AA +AE Y N Sbjct: 106 TKKAM---------------LNPKYSFDTFVIGKGNQMAHAAALVVAEDPGSIY-----N 145 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLF + VGLGKTHL+ AI + QP+ +V Y+++E F F ++I+ + + Sbjct: 146 PLFFYGGVGLGKTHLMHAIGHQMCLNQPDAKVKYVSSETFTNEFINSIQTKNSEEFRKEY 205 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 RN+DLLL+DD+QFL K EF H N L + KQ+V +DRPP++++ L R+ SR Sbjct: 206 RNVDLLLVDDIQFLAEKEATLEEFFHTFNDLYNDNKQIVLTSDRPPNDIQKLPERLVSRF 265 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G+SV + D E R +IL+ + + +L I ++ L ++A + ++ REL+GA Sbjct: 266 AWGLSVDITPPDLETRIAILRKK-----ADAERLEIPDDTLSYIAGQIDSNIRELEGA-- 318 Query: 377 QLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 LV ++ I +T +A + L L + G K++ I IQ VAK+Y+I DL Sbjct: 319 -LVRVQAYGTINGEDITTSLAADALKSLKSAGNKKQLSILQIQEEVAKYYHIPLKDLKGK 377 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 +R++++V PRQ++MYLS+ MT S P+IG FG +DHTTV+HA K++++++ D ++KE Sbjct: 378 KRIKSIVVPRQISMYLSREMTENSLPKIGAEFGGKDHTTVIHAHEKIQQLMKKDPAIQKE 437 Query: 493 VELLKRLIS 501 V LK +++ Sbjct: 438 VNELKNILN 446 >gi|217966450|ref|YP_002351956.1| chromosomal replication initiator protein DnaA [Dictyoglomus turgidum DSM 6724] gi|217335549|gb|ACK41342.1| chromosomal replication initiator protein DnaA [Dictyoglomus turgidum DSM 6724] Length = 443 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/466 (31%), Positives = 253/466 (54%), Gaps = 43/466 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + +SI+ S L ++ + +W + LK ++ + + L P F K W++ YL I Sbjct: 3 DIKSIWEEALSYLSLEISRPGFETWIKTLKPLTLEGSKIVLQTPNKFSKDWLEEYYLPLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ ++ + VEIL EK + P K+ ++T+ + Sbjct: 63 EEVIRKVTQKDFKVEILAE-------EKEENIPEDKKVEYLSTSYNN------------- 102 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G SNR A AA ++++ Y NPL I+ VGLGKTHL+ Sbjct: 103 ----LNPKYTFDTFVVGDSNRFAHAAALAVSQNPGKAY-----NPLLIYGGVGLGKTHLI 153 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI ++ ++ P RVVY + E F AI+++ ++ RNID+LLIDD+QFL G Sbjct: 154 HAIGHSIQEKYPKARVVYASMEKFTVELIDAIKEDGMTKFRNRYRNIDVLLIDDIQFLAG 213 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + N+L ++ KQ+V +DR P E+ +L+ R+RSR + G+ + D E R Sbjct: 214 KERTQEEFFYTFNALYEAGKQIVLTSDRVPKEIPTLEDRLRSRFEWGLIADIQPPDLETR 273 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----L 388 +ILK + + + P +EV+ +A + ++ REL+GA L+ +FA + + Sbjct: 274 IAILKKKAEAEKAKVP-----DEVIEFIASQIQSNIRELEGA---LIRTIAFASLNNMPI 325 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A +L ++ + K + I++I + VA+++NI+ L R + + PRQ+AMYL Sbjct: 326 NLELAKTVLKDIIQP-QIKNITIQNILQAVAEYFNITVEQLKGKGRSQEIAVPRQIAMYL 384 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 ++ +T S P+IG G RDHTTVLHA K++++ +TD+++KK ++ Sbjct: 385 ARTLTDLSLPKIGEELGGRDHTTVLHAYEKIQELYQTDLSIKKAIQ 430 >gi|114778882|ref|ZP_01453679.1| chromosomal replication initiator protein dnaA [Mariprofundus ferrooxydans PV-1] gi|114550851|gb|EAU53417.1| chromosomal replication initiator protein dnaA [Mariprofundus ferrooxydans PV-1] Length = 469 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 153/451 (33%), Positives = 238/451 (52%), Gaps = 35/451 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ +S RLK+++ + +W + + + ++VP+ F +KN Y I Sbjct: 32 NTSPLWQQISDRLKDEISVSRFDAWIRPVSATQNGQKLT-IAVPSRFFMEGLKNSYAARI 90 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +L E + G +I + S + + T P P + + + V Sbjct: 91 AELAAE----VTGTDIDL-SYQVDTSLATQGDP--------------EPAMPDEADLLLV 131 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 G +D RF F FI GS N AAQ++AE Y NPL+++ VGLGKTHL+ Sbjct: 132 DGY-IDPRFTFENFIVGSGNEFCHAAAQAVAEKPGAIY-----NPLYLYGGVGLGKTHLI 185 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ANA I + N R+ Y T E F AIR+ N ++ R +D+L+IDD+QF+ G Sbjct: 186 NAVANALISKN-NYRIAYRTGERFTNELIQAIRNGSTDNFRNQYRQVDVLIIDDIQFIAG 244 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + KQ++ +DR P +L +L R+RSR G+ + D E R Sbjct: 245 KDRTQEEFFHTFNALYEIKKQIILTSDRSPRDLTNLMERLRSRFNWGLVADIQPPDLETR 304 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL S+ E ++++ +V +A +T + REL+GA +L + + Sbjct: 305 LAILS-----SKAELAGVHMDRDVANLLATRITNNVRELEGALTRLTAHATLTGRTIDVT 359 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A +L L++ E + + +EDIQ+ +A +YNI+ ++ S++R RTV PRQVAMY K Sbjct: 360 FARHVLRDLLHE-EIRAISVEDIQKQIAAYYNINIREMSSSKRSRTVAFPRQVAMYACKE 418 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 +T S PEIG RFG +DHTT+L+AVRK+ KM Sbjct: 419 LTTMSLPEIGARFGGKDHTTILYAVRKIAKM 449 >gi|325953648|ref|YP_004237308.1| Chromosomal replication initiator protein dnaA [Weeksella virosa DSM 16922] gi|323436266|gb|ADX66730.1| Chromosomal replication initiator protein dnaA [Weeksella virosa DSM 16922] Length = 475 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 147/473 (31%), Positives = 255/473 (53%), Gaps = 27/473 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL----ETITKLFQE 99 S +++ + + + +WF K ++ NI+ + VP+ F W+++ Y+ + K+ Sbjct: 14 SYIQDNIDKEAFDTWFLPTKAVKLVENILTIQVPSKFFYEWLEDNYITLLKSALLKVLGP 73 Query: 100 EHSRIQGVEILVR-------SVALPSVEKTASSPSITKLS-PINTNISKSPIIL-GKQTI 150 + + + +R +V +PS+ K P++ I +N +P ++ G Q I Sbjct: 74 DGKLVYSIVTNMRNKPQNPDTVKIPSINKEKVKPNLIDAPLKIESNDVLNPFVIPGLQKI 133 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ R+ F FIEG SNR+A TA ++IA+ G T+ NP FI+ VGLGKT Sbjct: 134 K--IDSQLNYRYNFDNFIEGESNRLARTAGKAIAK--RPGGTS--FNPFFIYGGVGLGKT 187 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + P+ V+Y++ E F +F +A+ + + + ID+L+IDD+QF Sbjct: 188 HLVHAIGQEIKELYPDKSVLYVSTEKFTMQFINAVANKSQNDFVHFYQMIDVLIIDDIQF 247 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q F H+ N L KQ++ +D+ P+ L ++PR+ SR + G++ L + D Sbjct: 248 LAGKAKTQEAFFHIFNDLQQKGKQIILTSDKSPATLTEMEPRLISRFKWGLNAELQMPDA 307 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 R +I++ ++ E + I E VL ++A V T+ REL+G N ++ + +F + Sbjct: 308 STRRNIIQQKV-----EKDGIEIPETVLDYIAENVETNVRELEGTLNSIIAQSTFNRKEI 362 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++ + LS+++ + K++ I+ IQ+ V ++ I D+ S R R VV+ R +AMY Sbjct: 363 TLDLVKDTLSNIIQYSK-KEISIDYIQKTVCDYFKIPIEDIQSRSRKRDVVQARHLAMYF 421 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +KI T S IG + G+RDH TVLHA + V + ETD K +E + + ++ Sbjct: 422 AKIHTKASLKSIGDKIGNRDHATVLHACKTVTNLSETDKIFKGYIEEINKKLT 474 >gi|257464820|ref|ZP_05629191.1| chromosomal replication initiation protein [Actinobacillus minor 202] gi|257450480|gb|EEV24523.1| chromosomal replication initiation protein [Actinobacillus minor 202] Length = 446 Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 162/474 (34%), Positives = 254/474 (53%), Gaps = 40/474 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++T S LK +V Y W + L+ S + + L F++ +K+ +L I L Sbjct: 3 SLWTDCLSHLKTKVSDTEYNIWLRPLQ-PSFSNGELTLYAQNPFVEKHVKDHFLAEIIDL 61 Query: 97 FQEEHSRIQGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + SR + + R PS E++ S+P+++ G+ +P F Sbjct: 62 ARF-LSRNDQLVVSTRIGIRPSEQAERSVSAPAVS----------------GENVGTPTF 104 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAE--VDSHGYTTVRLNPLFIHASVGLGKTHL 212 S +D F F++G SN++A AQ + +SH NP ++AS GLGKTHL Sbjct: 105 RSGIDPTQRFDNFVQGRSNQLAKAVAQQVVSDLGESH------CNPFSLYASTGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--ALNLKDSLRNIDLLLIDDMQF 270 L AI NA K+ P+LRV+Y+ +E F AI N A LK R++D+L+IDD+QF Sbjct: 159 LHAIGNALQKKDPSLRVLYIHSERFYRDILKAINTNSNEADKLKKFYRSLDVLMIDDIQF 218 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L K +Q EF HL N+L + KQ+V ++ P +E +D I+SRL G+S + + Sbjct: 219 LADKPKVQEEFLHLFNALFEQKKQIVLTSNVFPKNIERIDDAIKSRLSWGISSTIEPPEL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PI 387 E R +IL+ + E+ +I+EE + + + T REL+GA N+++ PI Sbjct: 279 ETRVAILRKK-----AEERGADISEEATYLMGQKLRTHVRELEGALNRVIAWQKLTHRPI 333 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + + L + + + IE+IQR+VA++YNI D+ S R RT+ RPRQ+AM Sbjct: 334 TVDAVRETLRDMFASYDQL--ITIENIQRVVAEYYNIKLTDIKSKSRTRTIARPRQMAMA 391 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIGR FG RDHTTV+HA + + ++ ET+ T++++ L R +S Sbjct: 392 LAKELTNHSLPEIGREFGGRDHTTVMHACKTISELRETESTIQEDYTNLTRKLS 445 >gi|238915977|ref|YP_002929494.1| chromosomal replication initiator protein DnaA [Eubacterium eligens ATCC 27750] gi|238871337|gb|ACR71047.1| chromosomal replication initiator protein DnaA [Eubacterium eligens ATCC 27750] Length = 451 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 149/450 (33%), Positives = 248/450 (55%), Gaps = 42/450 (9%) Query: 55 YASWFQRLKFHSVLHNIVHL-SVPTNFLKAWIKNRYLE----TITKLFQEEHSRIQGVEI 109 + +W + LK +S+ N++ L S +I+ +YL+ +I ++ +E+S Sbjct: 29 FKTWIKPLKIYSLEGNVITLISSEGEMGTVYIERKYLKFIEISICEVMNKEYS------- 81 Query: 110 LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 VR +++ ++ I+ +S N N++ Q ++P + F TF+ Sbjct: 82 -VRLISVEEKKEEDLKKKISSVSANNNNVAT-------QNLNP--------NYTFDTFVV 125 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G++N +A A+ ++AE Y NPLFI+ GLGKTHL+QAIA+ I P+ +V Sbjct: 126 GTNNNLAHAASLAVAETPGQIY-----NPLFIYGGAGLGKTHLMQAIAHFIIASDPSKKV 180 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLL 288 +Y+T+E F +++ N ++ RNID+LLIDD+QF+ GKL Q EF + N L Sbjct: 181 LYVTSETFTNELIESVKTNKNTEFRNKYRNIDVLLIDDIQFIIGKLSTQEEFFNTFNDLY 240 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 KQ+V ++DRPP E+E+L R+R+R + G+ V + + YE + +I+ + E Sbjct: 241 LLGKQIVISSDRPPKEMETLPDRLRTRFESGLPVDIQIPTYETKMAIINKK-----SEAL 295 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTAEIADELLSHLVNTGET 406 ++ EV +VA +T+S REL+GA +L + S P LTAE A+ L L++ Sbjct: 296 GIDFPYEVKDYVATNITSSIRELEGALTKLSAYSKLSHTP-LTAEFAENTLKDLISPYSK 354 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K++ E I +VA+H++I D++S+RR + PRQ+AMYL + MT IG+ G+ Sbjct: 355 KEITPELIIEVVAEHFHIKPEDIISHRRSADIAFPRQIAMYLCRQMTQTPLEAIGKAMGN 414 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELL 496 RDHTTV++ K+ K T+ + K V++L Sbjct: 415 RDHTTVIYGADKIAKETVTNESTKNVVDIL 444 >gi|167627066|ref|YP_001677566.1| chromosomal replication initiation protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667603|ref|ZP_04755181.1| chromosomal replication initiation protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189044639|sp|B0TWF7|DNAA_FRAP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|167597067|gb|ABZ87065.1| chromosomal replication initiator protein DnaA [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 491 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 160/493 (32%), Positives = 254/493 (51%), Gaps = 68/493 (13%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTN-FLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 Y +W + + H +N + N + K IK++Y E I+ QE H G ++ S Sbjct: 20 YKTWIKPI--HVEQNNYLFTIYCNNEYFKKHIKSKYGEIISSTIQEFHD---GDLLIEYS 74 Query: 114 VALPSVEKTASSPSITKLSPI----------------NTNISKSP--------------- 142 S EK SP +T + P T++++ P Sbjct: 75 NKKFSGEK---SPEVTSVGPQANFFNQKNVEIKDDSEETSLNQEPKKSQKKLSSKNSASQ 131 Query: 143 ---------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 +I K FG PL ++VF +F+ G +N++A AA ++ Sbjct: 132 ELFGFDEAMLITDKDDQEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS------INP 185 Query: 194 VRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 +L NPLFI+ GLGKTHL+QAI N + + PN R++Y +E F+ + ++IR Sbjct: 186 GKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDE 245 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+E+E L+ R Sbjct: 246 FQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEER 305 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + SR G++V + + D E R +IL + + D + E +A V T+ REL Sbjct: 306 LVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVREL 360 Query: 372 DGAFNQLVFRHSFA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 +GA N+++ F P T E+A L ++ E KK++I++IQ++VA Y I D Sbjct: 361 EGALNRVLTTSKFNHKDP--TIEVAQACLRDVIKIQE-KKVKIDNIQKVVADFYRIRVKD 417 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ +++ + Sbjct: 418 LTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTS 477 Query: 489 LKKEVELLKRLIS 501 + + ELL IS Sbjct: 478 ISDDYELLLDKIS 490 >gi|89255450|ref|YP_512811.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica LVS] gi|254366860|ref|ZP_04982898.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica 257] gi|123287421|sp|Q2A640|DNAA_FRATH RecName: Full=Chromosomal replication initiator protein DnaA gi|89143281|emb|CAJ78442.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica LVS] gi|134252688|gb|EBA51782.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica 257] Length = 491 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 213/364 (58%), Gaps = 19/364 (5%) Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL-NPLFI 201 +I K+ FG PL ++VF +F+ G +N++A AA ++ +L NPLFI Sbjct: 141 LITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS------INPGKLHNPLFI 194 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHL+QAI N + + PN +++Y +E F+ + ++IR + R+ D Sbjct: 195 YGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSAD 254 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G+ Sbjct: 255 ILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGL 314 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + D E R +IL + + D + E +A V T+ REL+GA N+++ Sbjct: 315 TVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLT 369 Query: 381 RHSFA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 F P T E+A L ++ E KK++I++IQ++VA Y I DL SN+R R Sbjct: 370 TSKFNHKDP--TIEVAQACLRDVIKIQE-KKVKIDNIQKVVADFYRIRVKDLTSNQRSRN 426 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ +++ ++ + ELL Sbjct: 427 IARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTSISDDYELLL 486 Query: 498 RLIS 501 IS Sbjct: 487 DKIS 490 >gi|115313982|ref|YP_762705.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica OSU18] gi|122325952|sp|Q0BPB6|DNAA_FRATO RecName: Full=Chromosomal replication initiator protein DnaA gi|115128881|gb|ABI82068.1| DNA-directed DNA replication initiator protein [Francisella tularensis subsp. holarctica OSU18] Length = 491 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 213/364 (58%), Gaps = 19/364 (5%) Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL-NPLFI 201 +I K+ FG PL ++VF +F+ G +N++A AA ++ +L NPLFI Sbjct: 141 LITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS------INPGKLHNPLFI 194 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHL+QAI N + + PN +++Y +E F+ + ++IR + R+ D Sbjct: 195 YGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSAD 254 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G+ Sbjct: 255 ILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGL 314 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + D E R +IL + + D + E +A V T+ REL+GA N+++ Sbjct: 315 TVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLT 369 Query: 381 RHSFA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 F P T E+A L ++ E KK++I++IQ++VA Y I DL SN+R R Sbjct: 370 TSKFNHKDP--TIEVAQACLRDVIKIQE-KKVKIDNIQKVVADFYRIRVKDLTSNQRSRN 426 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ +++ ++ + ELL Sbjct: 427 IARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTSISDDYELLL 486 Query: 498 RLIS 501 IS Sbjct: 487 DKIS 490 >gi|325284917|ref|YP_004260707.1| Chromosomal replication initiator protein dnaA [Cellulophaga lytica DSM 7489] gi|324320371|gb|ADY27836.1| Chromosomal replication initiator protein dnaA [Cellulophaga lytica DSM 7489] Length = 474 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 156/487 (32%), Positives = 262/487 (53%), Gaps = 29/487 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V ES++ S +K+ + P + +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MSVTAESVWNNCLSFIKDNIQPQAFKTWFEPIKPIKLSDNSLSVQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVAL-----PSVEKTASSPSITKLSPINTNI---SKSP 142 + + +E + ++R P EK SS + T +SP ++ SK+P Sbjct: 61 KLLKVSLTKELGENAKLVYIIRMENTYGNREPFTEKIPSS-NRTTVSPQELDVPIKSKNP 119 Query: 143 ------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 +I G + I S L+ + F F+EG SNR+A +A ++A + G T+ Sbjct: 120 ELRNPFVIPGIRNIK--IESQLNPNYNFDNFLEGDSNRLARSAGMAVA--NKPGGTS--F 173 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL I VGLGKTHL AI + P V+Y++AE F ++ +++ N + Sbjct: 174 NPLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHF 233 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR Sbjct: 234 YQLIDILIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSR 293 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+S L DYE R SILKN+L E P EE++ +VA+ + ++ REL+GA Sbjct: 294 FKWGLSAELQTPDYETRVSILKNKLYRDGVEMP-----EEIIDYVAKNIKSNIRELEGAV 348 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 L+ + SF +T E+A +++ V + +++ I+ IQ++V+ ++ + + L S R Sbjct: 349 ISLIAQSSFNKKEITIELAQQIVEKFVKNTK-REVSIDYIQKVVSDYFEMDVSTLQSKTR 407 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + ETD +K +E Sbjct: 408 KRHIVQARQLAMFFAKRFTKASLASIGSQIGKRDHATVLHACKTVDNLAETDKQFRKYIE 467 Query: 495 LLKRLIS 501 L + S Sbjct: 468 DLTKKFS 474 >gi|315170513|gb|EFU14530.1| replication initiator protein DnaA [Enterococcus faecalis TX1342] Length = 447 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 207/349 (59%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ AI Sbjct: 111 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLMHAIG 165 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL K Sbjct: 166 HQMLVNQPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEAT 225 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R +IL Sbjct: 226 LEEFFHTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAIL 285 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + + +L I ++ L ++A + ++ REL+GA LV +FA I +T + Sbjct: 286 RKK-----ADAERLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFATINGEDITTSL 337 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ M Sbjct: 338 AADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREM 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG +DHTTV+HA K++++LE D ++KEV +K L++ Sbjct: 398 TDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLEKDPAIQKEVSEIKNLLN 446 >gi|254363202|ref|ZP_04979251.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica PHL213] gi|153095096|gb|EDN75647.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica PHL213] Length = 445 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 261/472 (55%), Gaps = 37/472 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L IT+L Sbjct: 3 SLWSDCLNHLQTKVSPTDYSTWLRPLQASSE-NGELTLYAQNQFVENWVKDKFLSEITEL 61 Query: 97 --FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F ++ + ++ V + E+ SP++ S +N F Sbjct: 62 ARFLAKNDNL----VVTLKVGIKPTEQPKVSPNLKNESSEFSNTG--------------F 103 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ F F++G SN++A AQ + VD+ G + NPL +A GLGKTHLL Sbjct: 104 KTGLNPNQTFDNFVQGRSNQLAKLVAQQV--VDNLGES--HCNPLSFYAGTGLGKTHLLH 159 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI N +KR P RV+Y+ E F AI +N A +K R++D+L+IDD+QFL Sbjct: 160 AIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDDIQFLA 219 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K +Q EF HLLN+L + KQ++ +D P ++ +D I+SRL GG+S + + E Sbjct: 220 NKPKVQEEFLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATIEPPELET 279 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPILT 389 R +IL+ + A+ + D + E+ + + + T+ REL+GA N+++ + + PI T Sbjct: 280 RVAILRQK-ALERGAD----LQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLRPI-T 333 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L + + + IE+IQR+VA++Y I D+ S R R++ RPRQ+AM L+ Sbjct: 334 VDAVRETLQDLFASFDYL-ITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMAMALA 392 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIGR FG RDHTTV+HA + + ++ +T+ ++++ L R +S Sbjct: 393 KELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLS 444 >gi|254876148|ref|ZP_05248858.1| chromosomal replication initiator protein dnaA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842169|gb|EET20583.1| chromosomal replication initiator protein dnaA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 497 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 161/494 (32%), Positives = 255/494 (51%), Gaps = 70/494 (14%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTN-FLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 Y +W + + H +N + N + K IK++Y E I+ QE H G ++ S Sbjct: 26 YKTWIKPI--HVEQNNYLFTIYCNNEYFKKHIKSKYGEIISSTIQEFHD---GDLLIEYS 80 Query: 114 VALPSVEKTASSPSITKLSPI----------------NTNISKSP--------------- 142 S EK SP +T + P T++++ P Sbjct: 81 NKKFSGEK---SPEVTSVGPQANFFNQKNVEIKDDSEETSLNQEPKKSQKKLSSKNSASQ 137 Query: 143 ---------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 +I K FG PL ++VF +F+ G +N++A AA ++ Sbjct: 138 ELFGFDEAMLITDKDDQEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS------INP 191 Query: 194 VRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 +L NPLFI+ GLGKTHL+QAI N + + PN R++Y +E F+ + ++IR Sbjct: 192 GKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDE 251 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+E+E L+ R Sbjct: 252 FQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEER 311 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + SR G++V + + D E R +IL + + D + E +A V T+ REL Sbjct: 312 LVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVREL 366 Query: 372 DGAFNQLV----FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 +GA N+++ F H P T E+A L ++ E KK++I++IQ++VA Y I Sbjct: 367 EGALNRVLTTSKFNHK-DP--TIEVAQACLRDVIKIQE-KKVKIDNIQKVVADFYRIRVK 422 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ +++ Sbjct: 423 DLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNT 482 Query: 488 TLKKEVELLKRLIS 501 ++ + ELL IS Sbjct: 483 SISDDYELLLDKIS 496 >gi|29374662|ref|NP_813814.1| chromosomal replication initiation protein [Enterococcus faecalis V583] gi|227518108|ref|ZP_03948157.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX0104] gi|227555685|ref|ZP_03985732.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis HH22] gi|229547129|ref|ZP_04435854.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX1322] gi|229550699|ref|ZP_04439424.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis ATCC 29200] gi|255971549|ref|ZP_05422135.1| chromosomal replication initiator protein [Enterococcus faecalis T1] gi|255974522|ref|ZP_05425108.1| chromosomal replication initiator protein [Enterococcus faecalis T2] gi|256618527|ref|ZP_05475373.1| chromosomal replication initiator protein [Enterococcus faecalis ATCC 4200] gi|256761854|ref|ZP_05502434.1| chromosomal replication initiator protein [Enterococcus faecalis T3] gi|256854981|ref|ZP_05560342.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis T8] gi|256957015|ref|ZP_05561186.1| chromosomal replication initiator protein [Enterococcus faecalis DS5] gi|256960824|ref|ZP_05564995.1| chromosomal replication initiator protein [Enterococcus faecalis Merz96] gi|256963983|ref|ZP_05568154.1| chromosomal replication initiator protein [Enterococcus faecalis HIP11704] gi|257078692|ref|ZP_05573053.1| chromosomal replication initiator protein [Enterococcus faecalis JH1] gi|257081347|ref|ZP_05575708.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis E1Sol] gi|257084004|ref|ZP_05578365.1| chromosomal replication initiator protein [Enterococcus faecalis Fly1] gi|257087834|ref|ZP_05582195.1| chromosomal replication initiator protein [Enterococcus faecalis D6] gi|257088486|ref|ZP_05582847.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis CH188] gi|257417426|ref|ZP_05594420.1| chromosomal replication initiator protein [Enterococcus faecalis AR01/DG] gi|257418842|ref|ZP_05595836.1| chromosomal replication initiator protein [Enterococcus faecalis T11] gi|257421343|ref|ZP_05598333.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis X98] gi|293382662|ref|ZP_06628590.1| ATPase [Enterococcus faecalis R712] gi|293387926|ref|ZP_06632462.1| ATPase [Enterococcus faecalis S613] gi|294781248|ref|ZP_06746595.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis PC1.1] gi|300861740|ref|ZP_07107820.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TUSoD Ef11] gi|307268916|ref|ZP_07550280.1| replication initiator protein DnaA [Enterococcus faecalis TX4248] gi|307274012|ref|ZP_07555222.1| replication initiator protein DnaA [Enterococcus faecalis TX0855] gi|307276499|ref|ZP_07557619.1| replication initiator protein DnaA [Enterococcus faecalis TX2134] gi|307284059|ref|ZP_07564229.1| replication initiator protein DnaA [Enterococcus faecalis TX0860] gi|307287182|ref|ZP_07567253.1| replication initiator protein DnaA [Enterococcus faecalis TX0109] gi|307296590|ref|ZP_07576410.1| replication initiator protein DnaA [Enterococcus faecalis TX0411] gi|312908814|ref|ZP_07767753.1| replication initiator protein DnaA [Enterococcus faecalis DAPTO 512] gi|312951720|ref|ZP_07770614.1| replication initiator protein DnaA [Enterococcus faecalis TX0102] gi|312979544|ref|ZP_07791226.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis DAPTO 516] gi|38257441|sp|Q839Z5|DNAA_ENTFA RecName: Full=Chromosomal replication initiator protein DnaA gi|29342120|gb|AAO79886.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis V583] gi|227074442|gb|EEI12405.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX0104] gi|227175195|gb|EEI56167.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis HH22] gi|229304132|gb|EEN70128.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis ATCC 29200] gi|229307711|gb|EEN73698.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX1322] gi|255962567|gb|EET95043.1| chromosomal replication initiator protein [Enterococcus faecalis T1] gi|255967394|gb|EET98016.1| chromosomal replication initiator protein [Enterococcus faecalis T2] gi|256598054|gb|EEU17230.1| chromosomal replication initiator protein [Enterococcus faecalis ATCC 4200] gi|256683105|gb|EEU22800.1| chromosomal replication initiator protein [Enterococcus faecalis T3] gi|256709494|gb|EEU24541.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis T8] gi|256947511|gb|EEU64143.1| chromosomal replication initiator protein [Enterococcus faecalis DS5] gi|256951320|gb|EEU67952.1| chromosomal replication initiator protein [Enterococcus faecalis Merz96] gi|256954479|gb|EEU71111.1| chromosomal replication initiator protein [Enterococcus faecalis HIP11704] gi|256986722|gb|EEU74024.1| chromosomal replication initiator protein [Enterococcus faecalis JH1] gi|256989377|gb|EEU76679.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis E1Sol] gi|256992034|gb|EEU79336.1| chromosomal replication initiator protein [Enterococcus faecalis Fly1] gi|256995864|gb|EEU83166.1| chromosomal replication initiator protein [Enterococcus faecalis D6] gi|256997298|gb|EEU83818.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis CH188] gi|257159254|gb|EEU89214.1| chromosomal replication initiator protein [Enterococcus faecalis ARO1/DG] gi|257160670|gb|EEU90630.1| chromosomal replication initiator protein [Enterococcus faecalis T11] gi|257163167|gb|EEU93127.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis X98] gi|291079968|gb|EFE17332.1| ATPase [Enterococcus faecalis R712] gi|291082663|gb|EFE19626.1| ATPase [Enterococcus faecalis S613] gi|294451711|gb|EFG20166.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis PC1.1] gi|295112341|emb|CBL30978.1| chromosomal replication initiator protein DnaA [Enterococcus sp. 7L76] gi|300848265|gb|EFK76022.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TUSoD Ef11] gi|306495926|gb|EFM65514.1| replication initiator protein DnaA [Enterococcus faecalis TX0411] gi|306501780|gb|EFM71071.1| replication initiator protein DnaA [Enterococcus faecalis TX0109] gi|306503430|gb|EFM72679.1| replication initiator protein DnaA [Enterococcus faecalis TX0860] gi|306506826|gb|EFM75976.1| replication initiator protein DnaA [Enterococcus faecalis TX2134] gi|306509320|gb|EFM78380.1| replication initiator protein DnaA [Enterococcus faecalis TX0855] gi|306514724|gb|EFM83275.1| replication initiator protein DnaA [Enterococcus faecalis TX4248] gi|310625252|gb|EFQ08535.1| replication initiator protein DnaA [Enterococcus faecalis DAPTO 512] gi|310630293|gb|EFQ13576.1| replication initiator protein DnaA [Enterococcus faecalis TX0102] gi|311287726|gb|EFQ66282.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis DAPTO 516] gi|315026677|gb|EFT38609.1| replication initiator protein DnaA [Enterococcus faecalis TX2137] gi|315030122|gb|EFT42054.1| replication initiator protein DnaA [Enterococcus faecalis TX4000] gi|315033557|gb|EFT45489.1| replication initiator protein DnaA [Enterococcus faecalis TX0017] gi|315036380|gb|EFT48312.1| replication initiator protein DnaA [Enterococcus faecalis TX0027] gi|315143595|gb|EFT87611.1| replication initiator protein DnaA [Enterococcus faecalis TX2141] gi|315148267|gb|EFT92283.1| replication initiator protein DnaA [Enterococcus faecalis TX4244] gi|315151291|gb|EFT95307.1| replication initiator protein DnaA [Enterococcus faecalis TX0012] gi|315153717|gb|EFT97733.1| replication initiator protein DnaA [Enterococcus faecalis TX0031] gi|315155123|gb|EFT99139.1| replication initiator protein DnaA [Enterococcus faecalis TX0043] gi|315158747|gb|EFU02764.1| replication initiator protein DnaA [Enterococcus faecalis TX0312] gi|315163331|gb|EFU07348.1| replication initiator protein DnaA [Enterococcus faecalis TX0645] gi|315165728|gb|EFU09745.1| replication initiator protein DnaA [Enterococcus faecalis TX1302] gi|315168220|gb|EFU12237.1| replication initiator protein DnaA [Enterococcus faecalis TX1341] gi|315174182|gb|EFU18199.1| replication initiator protein DnaA [Enterococcus faecalis TX1346] gi|315573991|gb|EFU86182.1| replication initiator protein DnaA [Enterococcus faecalis TX0309B] gi|315578839|gb|EFU91030.1| replication initiator protein DnaA [Enterococcus faecalis TX0630] gi|315581942|gb|EFU94133.1| replication initiator protein DnaA [Enterococcus faecalis TX0309A] gi|323479240|gb|ADX78679.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis 62] gi|327533854|gb|AEA92688.1| ATPase [Enterococcus faecalis OG1RF] Length = 447 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 207/349 (59%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ AI Sbjct: 111 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLMHAIG 165 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL K Sbjct: 166 HQMLVNQPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEAT 225 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R +IL Sbjct: 226 LEEFFHTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAIL 285 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + + +L I ++ L ++A + ++ REL+GA LV +FA I +T + Sbjct: 286 RKK-----ADAERLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFATINGEDITTSL 337 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ M Sbjct: 338 AADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREM 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG +DHTTV+HA K++++LE D ++KEV +K L++ Sbjct: 398 TDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLEKDPAIQKEVSEIKNLLN 446 >gi|126697567|ref|YP_001086464.1| chromosomal replication initiator protein [Clostridium difficile 630] gi|254977343|ref|ZP_05273815.1| chromosomal replication initiator protein [Clostridium difficile QCD-66c26] gi|255094673|ref|ZP_05324151.1| chromosomal replication initiator protein [Clostridium difficile CIP 107932] gi|255102900|ref|ZP_05331877.1| chromosomal replication initiator protein [Clostridium difficile QCD-63q42] gi|255308720|ref|ZP_05352891.1| chromosomal replication initiator protein [Clostridium difficile ATCC 43255] gi|255316427|ref|ZP_05358010.1| chromosomal replication initiator protein [Clostridium difficile QCD-76w55] gi|255519087|ref|ZP_05386763.1| chromosomal replication initiator protein [Clostridium difficile QCD-97b34] gi|255652270|ref|ZP_05399172.1| chromosomal replication initiator protein [Clostridium difficile QCD-37x79] gi|255657639|ref|ZP_05403048.1| chromosomal replication initiator protein [Clostridium difficile QCD-23m63] gi|260681770|ref|YP_003213055.1| chromosomal replication initiator protein [Clostridium difficile CD196] gi|296452680|ref|ZP_06894371.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP08] gi|296880067|ref|ZP_06904036.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP07] gi|306521985|ref|ZP_07408332.1| chromosomal replication initiator protein [Clostridium difficile QCD-32g58] gi|115249004|emb|CAJ66815.1| Chromosomal replication initiator protein [Clostridium difficile] gi|260207933|emb|CBA60042.1| chromosomal replication initiator protein [Clostridium difficile CD196] gi|296258462|gb|EFH05366.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP08] gi|296428934|gb|EFH14812.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP07] Length = 439 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 135/442 (30%), Positives = 249/442 (56%), Gaps = 44/442 (9%) Query: 64 FHSVLHNIVHLSV---------PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 F++ NIV L + P++F K ++NRYL I + + ++ ++ Sbjct: 23 FNTFFKNIVPLKIHLNDLILLAPSDFNKDILENRYLHLIEDAISQLSLKKYNIKFVL--- 79 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 S + L+ +T+ L + + P L+ ++ F TF+ G+SNR Sbjct: 80 ---------SEKEVADLNSDSTD-------LNYRVLYP----NLNPKYTFDTFVIGNSNR 119 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A ++AE + Y NPLF++ VGLGKTHL+ AI + + ++ + +VVY+++ Sbjct: 120 FAHAACVAVAESPAKAY-----NPLFLYGGVGLGKTHLMHAIGHHIVSQKKDSKVVYVSS 174 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F ++I+D+ ++ RN+D+LLIDD+QF+ GK Q EF H N+L ++ KQ Sbjct: 175 EKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERTQEEFFHTFNTLHEANKQ 234 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP ++ +L+ R+RSR + G+ + D+E R +IL+ + + ++++ Sbjct: 235 IIISSDRPPKDIPTLEDRLRSRFEMGLITDIQAPDFETRIAILRKKAQLE-----RIDVP 289 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIE 412 EV+ ++A+ + ++ REL+GA ++V S + +++ ++A E L ++ T + +++ + Sbjct: 290 NEVMSYIAKNIKSNIRELEGALTRVVAYSSLSNRVISFDLATEALKDIITTSKNEEINVL 349 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I+ V+ +N+ D S +R R++ PRQ+AMYL++ +T S P+IG FG RDHTTV Sbjct: 350 RIKEKVSSVFNLKMEDFNSKKRTRSIAYPRQIAMYLTRELTDLSLPKIGEEFGGRDHTTV 409 Query: 473 LHAVRKVEKMLETDITLKKEVE 494 +HA KV K +E +K +++ Sbjct: 410 IHAHDKVSKDIEESEEIKTKID 431 >gi|312903107|ref|ZP_07762288.1| replication initiator protein DnaA [Enterococcus faecalis TX0635] gi|310633498|gb|EFQ16781.1| replication initiator protein DnaA [Enterococcus faecalis TX0635] Length = 447 Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 207/349 (59%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ AI Sbjct: 111 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLMHAIG 165 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL K Sbjct: 166 HQMLVNQPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEAT 225 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R +IL Sbjct: 226 LEEFFHTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAIL 285 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + + +L I ++ L ++A + ++ REL+GA LV +FA I +T + Sbjct: 286 RKK-----ADAERLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFATINGEDITTSL 337 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ M Sbjct: 338 AADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREM 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG +DHTTV+HA K++++LE D ++KEV +K L++ Sbjct: 398 TDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLEKDPAIQKEVSEIKNLLN 446 >gi|264676137|ref|YP_003276043.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni CNB-2] gi|299530928|ref|ZP_07044342.1| chromosomal replication initiation protein [Comamonas testosteroni S44] gi|262206649|gb|ACY30747.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni CNB-2] gi|298721149|gb|EFI62092.1| chromosomal replication initiation protein [Comamonas testosteroni S44] Length = 468 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 144/438 (32%), Positives = 240/438 (54%), Gaps = 28/438 (6%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI-------LVRSVALPSVEKTAS 124 V + V F WI+ +Y I+ + + + + +E+ +VR+ P Sbjct: 48 VTVYVANRFKLDWIRAQYAGRISAMLESLYGQPVTLELALAQRESVVRTYVRP------- 100 Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 PS T+ + T+ P + ++ +PVF + L+ F T +EG++NR+A +AA +A Sbjct: 101 -PSSTQQAAPQTHNVAVPTVTSEEASAPVFRTRLNPALTFETLVEGTANRMARSAAMHVA 159 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 H Y NPLFI+ VGLGKTHL+ A+ N +K +P+ +++Y+ AE F+ A Sbjct: 160 GSPGHLY-----NPLFIYGGVGLGKTHLVHAVGNQLLKDKPDAKILYIHAEQFVSDVVKA 214 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 + K+ ++DLLLIDD+QF K Q EF + +LL +V +D P Sbjct: 215 YQRRTFDEFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPK 274 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L ++ R+ SR G++V + + EMR +IL N+ + P EEV VA+ Sbjct: 275 GLANIHERLVSRFDSGLTVAIEPPELEMRVAILINKARAENADMP-----EEVAFFVAKN 329 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V ++ REL+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y Sbjct: 330 VRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSI-QNRQISVENIQKTVADYY 388 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 389 KIKVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAGE 448 Query: 483 LETDITLKKEVELLKRLI 500 +T+ L +++ +L++ + Sbjct: 449 RQTNTELNQQLHVLEQTL 466 >gi|254429576|ref|ZP_05043283.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] gi|196195745|gb|EDX90704.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] Length = 474 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 168/483 (34%), Positives = 269/483 (55%), Gaps = 29/483 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI-VHLSVPTNFLKAWIKNRYLETIT 94 E ++ +RL++++ + W + L+ + + L P F+ W++++YL+ I Sbjct: 3 EELWQRCLTRLEDELPSQQFNMWIRPLQVAASADGAELTLFAPNRFVVDWVRDKYLDRIG 62 Query: 95 KLFQEEHSRIQG---VEILVRSVALPSVEKTASSPSITKLSPINTNI----SKSPIILGK 147 ++ E S +E+ + P S PI T + P + Sbjct: 63 EVLGELQSGPLPQLRLEVGSTRASTPVAASFNGSAPAASSGPITTPAVAPAPRQPESDSR 122 Query: 148 QTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFI 201 + + G S L++ F FSTF+EG SNR+A AAQ +AE SHGY NPL + Sbjct: 123 PQPTALGGARKHRSNLNTGFTFSTFVEGKSNRMAAAAAQQVAENPASHGY-----NPLLL 177 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ A+ N ++R PN +VVYL +E F+ SA+R+ K R++D Sbjct: 178 YGGVGLGKTHLMHAVGNELLRRNPNAKVVYLHSERFVADMISALRNKTINEFKRFYRSVD 237 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QF K Q EF H N+LL++ +Q++ D+ P E++ L+ R++SR G+ Sbjct: 238 ALLIDDIQFFACKEQSQEEFFHTFNALLENGQQIILTCDKFPKEVDGLEERLKSRFGWGL 297 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV- 379 S P+ + E R +ILK + E+ K+++ + +A+ + ++ REL+GA +++ Sbjct: 298 SQPMEPPELETRVAILKKK-----AEEAKVDLPNDAAFFIAQRIRSNVRELEGALRRVIA 352 Query: 380 -FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 R + A I I E L L+ + +++ I++IQR+VA++Y I NDLLS RR R+V Sbjct: 353 HVRFTGAQIDIGLI-KEALKDLIAL-QARQISIDNIQRIVAEYYKIKINDLLSPRRTRSV 410 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQVAM LSK +T S PEIG FG RDHTTVLHA RKV ++ E++ ++++ + L R Sbjct: 411 ARPRQVAMALSKELTSHSLPEIGENFGGRDHTTVLHACRKVLELRESNPEIEEDYQNLLR 470 Query: 499 LIS 501 ++ Sbjct: 471 TLT 473 >gi|225850462|ref|YP_002730696.1| chromosomal replication initiator protein DnaA [Persephonella marina EX-H1] gi|225646033|gb|ACO04219.1| chromosomal replication initiator protein DnaA [Persephonella marina EX-H1] Length = 437 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 209/348 (60%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +FVFS FI G+ N++A +A S+AE Y NPLFI+ +GLGKTHLL A A Sbjct: 100 LNPKFVFSNFIVGNCNKIAYSACMSVAENLGKIY-----NPLFIYGGIGLGKTHLLHATA 154 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + P+ ++Y TA+ FM +++ L + R++DLLLIDD+QFL+GK Sbjct: 155 HYVLSKNPDANIIYTTADTFMSELIYYMQNGSVLEFRRRYRDVDLLLIDDVQFLEGKERT 214 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E H+ N+L KQV+ ++D PP L+ L R++SR G+ V + D + + SI+ Sbjct: 215 QIELYHIFNALHLIGKQVILSSDTPPKNLKGLQERLKSRFVSGLVVEVKAPDLQTKISII 274 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL----TAEI 392 + D + + +V++ +A+T+ T+ REL+G+ ++L +++ IL T ++ Sbjct: 275 NKK-----SRDMNIKLPNDVILLIAKTINTNIRELEGSLSKL---KAYSEILGRPVTFDM 326 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E+L ++ E +++ IE IQR V+ ++ ++ N+LL N R + V RQ+AMYLS+ + Sbjct: 327 AREVLKDILEIKEVEELSIEKIQREVSNYFGVNINELLGNSRKKKVATARQIAMYLSRYL 386 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS EI + F +DH+TV++AV KVEK +E D + VE LK I Sbjct: 387 TDRSLSEISKAFKKKDHSTVINAVEKVEKNMEKDRKFRLTVEFLKEKI 434 >gi|149919113|ref|ZP_01907597.1| chromosomal replication initiator protein dnaA [Plesiocystis pacifica SIR-1] gi|149820043|gb|EDM79464.1| chromosomal replication initiator protein dnaA [Plesiocystis pacifica SIR-1] Length = 453 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 151/458 (32%), Positives = 250/458 (54%), Gaps = 27/458 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ ++ + W + ++ S+ + + L P FLK W + YL + + R Sbjct: 12 LEPRLDKQTFDMWLRPIRLASIEDDRLRLHAPNRFLKEWFETHYLALVLDEIEGRQGRRF 71 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI--SPVFGSPLDSRFV 163 GVE+ + A P+ ASS T+I++SP T+ P + L R+ Sbjct: 72 GVELEIVEPAEPAKAPAASS--------TETSIAQSPAAQPTVTLRRGPEAPTGLHPRYR 123 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +FI+G+SN +A +AA + ++ R NPLFI+ VGLGKTHLL I + ++ Sbjct: 124 FDSFIKGASNELAASAAMAASDAPG-----TRFNPLFIYGGVGLGKTHLLHGIGHELHRK 178 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK-LIQHEFC 281 P+LR+VYL+AE+FM F +A+R+N + R + D LLIDD+QF+ G+ EF Sbjct: 179 DPSLRIVYLSAEHFMNEFVTAVRNNQFDEFRARYRKDCDCLLIDDIQFIAGRDRTMDEFF 238 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H+ N+L ++ KQ+V +DR P+++ ++ R+ SRL G+ + D E R +I++ Sbjct: 239 HVFNALYEAGKQIVVTSDRVPADMPGMEARLTSRLNWGLVADVQPPDLETRIAIVQ---- 294 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 ++ E + + EV + +A V ++ REL+GA ++ +FA + I + ++ Sbjct: 295 -AKAERDGMELPAEVCLTIAELVRSNVRELEGALLRVT---AFAQLRGVAIDKAFVESVL 350 Query: 402 NTGETKK--MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 K + IE +Q+ VA +Y++ +DL RR R + RPR VAMYL + +T SFPE Sbjct: 351 GKRRVDKTPITIEAVQKAVAGYYSVRISDLKGKRRHRGISRPRMVAMYLCRQLTDSSFPE 410 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 IG RFG +DH+TV++A +++ + E D L+ VE L+ Sbjct: 411 IGMRFGGKDHSTVINACKRIAALQEDDEELRGAVESLR 448 >gi|119503573|ref|ZP_01625656.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2080] gi|119460635|gb|EAW41727.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2080] Length = 477 Score = 237 bits (605), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 154/474 (32%), Positives = 265/474 (55%), Gaps = 29/474 (6%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 RL++++ P + +W + L+ ++ V L+ P F++ +++ RY I ++ E ++ Sbjct: 16 GRLEDELPPQQFNTWIKPLQANAS-EGGVTLAAPNRFIRDFVEERYSVLIGEVLAESGAQ 74 Query: 104 -------IQGVEILVRSVALPSVEKTASSPSITKLSPINT--NISKS-----PIILGKQT 149 + G + V S A ++ TA + PI T ++K P QT Sbjct: 75 STEVTIVVGGAPVSVVSPATSTISGTAGAAVPCASQPIETPARVAKERFVAPPRAPAVQT 134 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + P L + F +F+EG SN++AL AAQ +A+ Y NPLF++ VGLGK Sbjct: 135 V-PSHQHNLVEGYTFRSFVEGKSNQLALAAAQQVADNPGDSY-----NPLFLYGGVGLGK 188 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ A+ N+ +++P+ R+VYL +E F+ A++ N + K R++D LLIDD+Q Sbjct: 189 THLMHAVGNSLRRKKPDARIVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQ 248 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ DR P E+ L+ R++SR G++V + + Sbjct: 249 FFANKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEINGLEERLKSRFGWGLTVAVEPPE 308 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + E + + + +A+ + ++ REL+GA +++ +F Sbjct: 309 LETRVAIL-----MKKAEQSGVTLPHDAAFFIAQRIRSNVRELEGALKRVIASANFTGRP 363 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 ++ E L L+ + K++ +++I+R+VA++Y I +L+S RR R++ RPRQVAM Sbjct: 364 FDIDLIKESLKDLLAL-QDKQVSLDNIKRIVAEYYKIKLAELMSKRRSRSIARPRQVAMA 422 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LSK +T S PEIG FG RDHTTVLHA RK++++ ET ++++ + L RL++ Sbjct: 423 LSKELTNHSLPEIGDSFGGRDHTTVLHACRKIKELRETTSDIREDYKNLLRLLT 476 >gi|145297125|ref|YP_001139966.1| chromosomal replication initiation protein [Aeromonas salmonicida subsp. salmonicida A449] gi|166201858|sp|A4SH46|DNAA_AERS4 RecName: Full=Chromosomal replication initiator protein DnaA gi|142849897|gb|ABO88218.1| chromosomal replication initiator protein DnaA [Aeromonas salmonicida subsp. salmonicida A449] Length = 456 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 150/469 (31%), Positives = 258/469 (55%), Gaps = 21/469 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL + + Sbjct: 4 SLWQQCLNRLQDELPSAEFSMWIRPLQ-AELSDNTLTLYAPNRFVLDWVRDKYLIRVNGI 62 Query: 97 FQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 E + GV+ L + + +P+N N+ KS P Sbjct: 63 INE----LCGVDGPTLRFDIGNRPHPVAIARAPARGAAPVN-NLQKSWESKADAKPEPNH 117 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S + + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 118 KSNTNVNYTFENFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLH 172 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA +R+ + +V+Y+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 173 AVGNAIKERKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 232 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 233 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRV 292 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ ++++ +EV +A+ + ++ REL+GA N+++ +F + + Sbjct: 293 AIL-----MRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDF 347 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K + Sbjct: 348 VREALRDLLALQE-KLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKEL 406 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG R+HTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 TNHSLPEIGDAFGGREHTTVLHACRKIEQLKEESHDIKEDYSNLIRTLS 455 >gi|221069747|ref|ZP_03545852.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni KF-1] gi|220714770|gb|EED70138.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni KF-1] Length = 468 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 144/438 (32%), Positives = 239/438 (54%), Gaps = 28/438 (6%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI-------LVRSVALPSVEKTAS 124 V + V F WI+ +Y I+ + + + + +E+ +VR+ P Sbjct: 48 VTVYVANRFKLDWIRAQYAGRISAMLESLYGQPVTLELALAQRESVVRTYVRP------- 100 Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 PS T+ + T P + ++ +PVF + L+ F T +EG++NR+A +AA +A Sbjct: 101 -PSATQQTAAQTLNVAVPTVTSEEASAPVFRTRLNPALTFETLVEGTANRMARSAAMHVA 159 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 H Y NPLFI+ VGLGKTHL+ A+ N +K +P+ +++Y+ AE F+ A Sbjct: 160 GSPGHLY-----NPLFIYGGVGLGKTHLVHAVGNQLLKDKPDAKILYIHAEQFVSDVVKA 214 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 + K+ ++DLLLIDD+QF K Q EF + +LL +V +D P Sbjct: 215 YQRRTFDEFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPK 274 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L ++ R+ SR G++V + + EMR +IL N+ + P EEV VA+ Sbjct: 275 GLANIHERLVSRFDSGLTVAIEPPELEMRVAILINKARAENADMP-----EEVAFFVAKN 329 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V ++ REL+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y Sbjct: 330 VRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSI-QNRQISVENIQKTVADYY 388 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 389 KIKVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAGE 448 Query: 483 LETDITLKKEVELLKRLI 500 +T+ L +++ +L++ + Sbjct: 449 RQTNTELNQQLHVLEQTL 466 >gi|238855506|ref|ZP_04645811.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 269-3] gi|282931532|ref|ZP_06337031.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] gi|238831872|gb|EEQ24204.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 269-3] gi|281304339|gb|EFA96442.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] Length = 455 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 207/349 (59%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 119 LNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 174 HQMLGERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGI 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 234 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I++ L ++A V+T+ REL+GA LV + A I A+I Sbjct: 294 RKK-----AESEGLVIDDATLDYIASQVSTNIRELEGA---LVKVQAHATIEKADINVNL 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L+ L +++ ++I IQ +VA ++ + N+L +RVR +V PRQ+AMYLS+ + Sbjct: 346 ARDALTDLKLVQKSRGLQISKIQEVVANYFQTTVNELKGKKRVRQIVVPRQIAMYLSRNL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG+ FG +DHTTV+HA K+EK + TD +K V LK+L+ Sbjct: 406 TDASLPKIGQEFGGKDHTTVMHAYEKIEKDIRTDAEIKSAVYELKQLLD 454 >gi|167957210|ref|ZP_02544284.1| chromosomal replication initiator protein DnaA [candidate division TM7 single-cell isolate TM7c] Length = 451 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 147/475 (30%), Positives = 254/475 (53%), Gaps = 40/475 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +++ V ++ V + +WF+ K + + + P F + ++ R+ Sbjct: 1 MDSHAVWQGVLGEIEVTVSSSSFTAWFKNTKLEIISDKEISIIAPNIFARTQLEKRFHPQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK-LSPINTNISKSPIILGKQTIS 151 I + H+ I I VE + P I + ++ + S +P+IL + Sbjct: 61 ILEALS--HNGISSPSISYH------VESSNKKPRINRDITKTERSGSSAPLILPSKK-- 110 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 S L+ R+ F FI GSSN +A A Q++A Y NPL+++ GLGKTH Sbjct: 111 -SHTSNLNPRYTFDNFIVGSSNDLAYAACQAVASHPGEKY-----NPLYLYGGSGLGKTH 164 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QA+ N IK+QP+ RV+Y+T E F+ F +IR D RN+D+L++DDMQF+ Sbjct: 165 LMQAVGNEIIKKQPSARVLYITTETFVNEFLDSIRFKKK-GFSDKYRNVDVLIVDDMQFI 223 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N L + KQ++ ++D+PP + +L R+RSR + G+++ + + DYE Sbjct: 224 AGKEKTQDEFFHTFNDLHQNNKQIIISSDKPPKSIPTLTDRLRSRFEWGMAIDIQMPDYE 283 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR---HSFAPI 387 R +I+K + IS E ++ +V+ ++A T+ REL+GA N+L+ +F P Sbjct: 284 TRCAIVKAKAEISNTE-----LDSDVVEYLATNFKTNIRELEGALNRLLAYAEMQNFTPD 338 Query: 388 LTAEIADELLSHLVNTGETKKMR-----IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 L A A+ +L G+ K+ R + I A++YNI D+ S+RR + + PR Sbjct: 339 LMA--AEGIL------GDIKRSRPQHVTAKQIIDKTARYYNIDVKDMCSSRRDKFIATPR 390 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 Q+AM+L + SFP+I + G +DHTT +H++ K+ K T++++++++ +K Sbjct: 391 QIAMFLLRSELKMSFPKIAQELGRKDHTTAMHSIEKITKESLTNVSIREQINDIK 445 >gi|312901296|ref|ZP_07760579.1| replication initiator protein DnaA [Enterococcus faecalis TX0470] gi|311291673|gb|EFQ70229.1| replication initiator protein DnaA [Enterococcus faecalis TX0470] Length = 447 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 207/349 (59%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ AI Sbjct: 111 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLMHAIG 165 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL K Sbjct: 166 HQMLVNQPDAKVKYVSSETFTNEFINSIQTRTSEQFRKEYRNVDLLLVDDIQFLAEKEAT 225 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R +IL Sbjct: 226 LEEFFHTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAIL 285 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + + +L I ++ L ++A + ++ REL+GA LV +FA I +T + Sbjct: 286 RKK-----ADAERLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFATINGEDITTSL 337 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ M Sbjct: 338 AADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREM 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG +DHTTV+HA K++++LE D ++KEV +K L++ Sbjct: 398 TDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLEKDPAIQKEVSEIKNLLN 446 >gi|260665210|ref|ZP_05866059.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii SJ-7A-US] gi|260560947|gb|EEX26922.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii SJ-7A-US] Length = 455 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 207/349 (59%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 119 LNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 174 HQMLGERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFFAKKEGI 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 234 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I++ L ++A V+T+ REL+GA LV + A I A+I Sbjct: 294 RKK-----AESEGLVIDDATLDYIASQVSTNIRELEGA---LVKVQAHATIEKADINVNL 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L+ L +++ ++I IQ +VA ++ + N+L +RVR +V PRQ+AMYLS+ + Sbjct: 346 ARDALTDLKLVQKSRGLQISKIQEVVANYFQTTVNELKGKKRVRQIVVPRQIAMYLSRNL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG+ FG +DHTTV+HA K+EK + TD +K V LK+L+ Sbjct: 406 TDASLPKIGQEFGGKDHTTVMHAYEKIEKDIRTDAEIKSAVYELKQLLD 454 >gi|15616642|ref|NP_239854.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681401|ref|YP_002467786.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219681957|ref|YP_002468341.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471074|ref|ZP_05635073.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132243|sp|P57128|DNAA_BUCAI RecName: Full=Chromosomal replication initiator protein DnaA gi|254777890|sp|B8D8H7|DNAA_BUCA5 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777891|sp|B8D6T1|DNAA_BUCAT RecName: Full=Chromosomal replication initiator protein DnaA gi|25299844|pir||D84931 chromosomal replication initiator protein dnaA [imported] - Buchnera sp. (strain APS) gi|10038705|dbj|BAB12740.1| chromosomal replication initiator protein dnaA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621690|gb|ACL29846.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624244|gb|ACL30399.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085762|gb|ADP65844.1| chromosomal replication initiation protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086339|gb|ADP66420.1| chromosomal replication initiation protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086914|gb|ADP66994.1| chromosomal replication initiation protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087505|gb|ADP67584.1| chromosomal replication initiation protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 454 Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 258/463 (55%), Gaps = 25/463 (5%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE---EH 101 RL++++ ++ W + LK + +NI+ + P F+ W+K++YL + K+ Q+ + Sbjct: 12 RLQDELPNTEFSMWIRSLK-AKLNNNILEIYAPNKFVLEWVKDKYLNHLKKILQDYCGTN 70 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 S + EI + ++ + I +NI K + + S ++ R Sbjct: 71 SPLIKFEIYQIYKENKLKKNIENNNNNKNEKLIWSNIPKFK--------NLSYRSNINKR 122 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+EG SN++A +AA A + Y NPLF++ + GLGKTHLL AI N + Sbjct: 123 YNFQNFVEGKSNQLARSAAFQAARNPGNSY-----NPLFLYGATGLGKTHLLHAIGNEIL 177 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 + +++++++ +E F+ A+++N K R++D LLIDD+QF K Q EF Sbjct: 178 SYKYDIKIIFMNSECFVQDMVKALKNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQEEF 237 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L++ +Q++ +DR P E+ ++ R++SR G+++ + + E R +IL Sbjct: 238 FHTFNTLIEGNQQIILTSDRYPKEINGVEDRLKSRFSWGLTIAIDPPEIETRVAIL---- 293 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSH 399 I + + + ++ EV +A+ + ++ REL+GA N+++ F +T + A E L Sbjct: 294 -IKKADQNNVILSNEVAFFIAKHLRSNVRELEGALNRVILNSRFTHRAITVDFAREALQD 352 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 ++ E K + I++IQ+ VAK+Y I +DLLS +R R++ RPRQ+AM ++K +T S PE Sbjct: 353 ILAVQE-KIITIDNIQKTVAKYYKIKVSDLLSKKRSRSIARPRQMAMAMAKKLTNHSLPE 411 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 IG F RDHTTVLHA K+E++ + + +KK+ L R +S+ Sbjct: 412 IGEAFSGRDHTTVLHACCKIEQLRKENHDIKKDFLNLIRTLSK 454 >gi|116332682|ref|YP_794209.1| DNA replication ATPase initiation [Lactobacillus brevis ATCC 367] gi|122270622|sp|Q03UE4|DNAA_LACBA RecName: Full=Chromosomal replication initiator protein DnaA gi|116098029|gb|ABJ63178.1| DNA replication ATPase initiation [Lactobacillus brevis ATCC 367] Length = 452 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 253/472 (53%), Gaps = 41/472 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET--IT 94 +++T + + + YA+W + K ++ N + L +P+ + + +++L+ + Sbjct: 6 TLWTDIKALFEENNSKTAYATWIETAKPIALDGNKLTLELPSPLHRDYWTHQHLDQQLVE 65 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +Q H IQ V IL E+ + K +P+ P +P F Sbjct: 66 YAYQAAHEDIQPVLILEN-------ERQQQATLKAKTAPVAAGEPVEP--------TPTF 110 Query: 155 --GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+SR+ F TF+ G N++A AA ++E V NPLF + VGLGKTHL Sbjct: 111 MKETALNSRYTFDTFVIGKGNQMAHAAALVVSEEPG-----VMYNPLFFYGGVGLGKTHL 165 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI N ++ +P+ +V Y+T+E F F +AI+ + RN+DLLL+DD+QF Sbjct: 166 MHAIGNKMLEDRPDTKVKYVTSEAFTNDFINAIQTRTQEQFRQEYRNVDLLLVDDIQFFA 225 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L D KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 226 NKEGTQEEFFHTFNALYDDGKQIVLTSDRLPNEIPKLQDRLVSRFAWGLSVDITPPDLET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA------FNQLVFRHSFA 385 R +IL+N+ Q ++I ++ L ++A + ++ REL+GA ++QL+ + Sbjct: 286 RIAILRNKADADQ-----IDIPDDTLSYIAGQIDSNVRELEGALARVQAYSQLMHQ---- 336 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 PI T ++A E L L + + I IQ VAK++++S DL +R + +V PRQ+A Sbjct: 337 PIAT-DLAAEALKSLNLANASDAVTIPVIQDRVAKYFDVSLKDLKGKKRKKAIVMPRQIA 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 MYLS+ +T S P IG FG +DHTTV+HA K+ + L+TD L+K+++ LK Sbjct: 396 MYLSRELTEASLPRIGNEFGGKDHTTVIHAYDKITESLKTDPQLQKDIDSLK 447 >gi|95929986|ref|ZP_01312726.1| chromosomal replication initiator protein DnaA [Desulfuromonas acetoxidans DSM 684] gi|95133955|gb|EAT15614.1| chromosomal replication initiator protein DnaA [Desulfuromonas acetoxidans DSM 684] Length = 444 Score = 236 bits (603), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 150/454 (33%), Positives = 251/454 (55%), Gaps = 30/454 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ ++ Y++W + +KF + N +++SV F+K WI+ Y + I ++ I Sbjct: 13 LQKKLNKQHYSTWIEPIKFDEIEGNTINISVSNKFIKDWIEKNYKDLILIEAKKISRDID 72 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 G+ I +++KT N N + I+P + FS Sbjct: 73 GINIKTDK----TIKKTFKKDKEEVKKEENNNFKNT-----NLNINP--------EYTFS 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 FI GSSN+ A AA ++A + Y NPLFI+ VGLGKTHL+ AI N IK Sbjct: 116 KFISGSSNQFAAAAAMAVANNPATIY-----NPLFIYGGVGLGKTHLINAIGNEIIKNNK 170 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 ++V Y ++E F ++IR ++ R+ID+LLIDD+QF+ GK Q EF H Sbjct: 171 KIKVSYYSSEKFTNELINSIRYGKMDEFRNKFRSIDVLLIDDVQFIAGKERTQEEFFHTF 230 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 NSL +S KQ+V +D+ P E+ L+ R+RSR + G+ + D E + +IL+ ++ Sbjct: 231 NSLYESHKQIVVTSDKFPKEIPGLEERLRSRFEWGLIADIQPPDIETKQAILE-----AK 285 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNT 403 E + + +EV + ++ +V ++ REL+G ++ S ++ E+A +L ++ Sbjct: 286 AEQNNIILPQEVALFLSNSVISNIRELEGYLVRIGAYSSLTSTPISIEMAKNILKDII-I 344 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 K++ IEDIQ+ V+ H+NI +++ S++RV+ +V PRQ+AMYL + +T S+PEIG Sbjct: 345 ESNKELTIEDIQKKVSNHFNIKISEIKSSKRVKNLVIPRQIAMYLCRQLTSCSYPEIGDH 404 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 FG +DH+TV+HA++K+EK +E D L+ ++ +K Sbjct: 405 FGGKDHSTVIHAIKKIEKNIENDSYLRSTIKTIK 438 >gi|312869247|ref|ZP_07729419.1| chromosomal replication initiator protein DnaA [Lactobacillus oris PB013-T2-3] gi|311095268|gb|EFQ53540.1| chromosomal replication initiator protein DnaA [Lactobacillus oris PB013-T2-3] Length = 435 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 134/348 (38%), Positives = 211/348 (60%), Gaps = 14/348 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P PL+ + F TF+ G N++A AA + AE GY +NPLFI+ VGLGKTH Sbjct: 95 PTSNIPLNPYYNFETFVVGDGNKIAHAAALNAAE--RPGY----MNPLFIYGGVGLGKTH 148 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L++AI N +K N RV Y+T+E F F ++I+ ++ RN+DLLLIDD+QFL Sbjct: 149 LMEAIGNYMLKINKNARVKYVTSEEFTNDFINSIQKRTTEQFREEYRNLDLLLIDDIQFL 208 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF + N+L D KQ+V +DR P E+ L R+ SR G+ V + D E Sbjct: 209 ADKEGTQIEFFNTFNTLYDQQKQIVLTSDRMPREIPELQDRLVSRFMWGMPVEITPPDLE 268 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILT 389 R +IL++++ E+ ++I + L ++A + T+ REL+GA ++ V+ I+T Sbjct: 269 TRIAILRSKV-----EEDHIDIGNDTLNYIAGQIDTNVRELEGALTKVQVYADLSNEIIT 323 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A L ++ + +++ +EDIQ+ VA YNI++ D++ +RV+ +V PRQ+AMYL+ Sbjct: 324 PHLASRALKDFRHSAK-RQITVEDIQKQVASFYNITQADIIGKKRVKQIVMPRQIAMYLT 382 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + +T S P+IG+ FG +DHTTVLHA+ K+E ++ D L++++ LK Sbjct: 383 RELTDFSLPKIGKEFGGKDHTTVLHAIDKIEASIKDDSQLQQDIHKLK 430 >gi|260887485|ref|ZP_05898748.1| ATPase [Selenomonas sputigena ATCC 35185] gi|330837867|ref|YP_004412447.1| chromosomal replication initiator protein DnaA [Selenomonas sputigena ATCC 35185] gi|260862772|gb|EEX77272.1| ATPase [Selenomonas sputigena ATCC 35185] gi|329745631|gb|AEB98987.1| chromosomal replication initiator protein DnaA [Selenomonas sputigena ATCC 35185] Length = 488 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 151/470 (32%), Positives = 259/470 (55%), Gaps = 39/470 (8%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI----LVRS 113 W + +K S+ + L PT+ + WI RY+ + + + +EI + + Sbjct: 31 WLRPVKPLSLSDTTLVLGAPTSLAREWIVKRYIPFLEDAVLDIAKKKLKIEIKNLNIEPA 90 Query: 114 VALPSVEKT-----ASSPSITKL-------------SPINTNISKSPIILGKQTISPVFG 155 P V++T ++PS+ ++ +P + S+S G I+P Sbjct: 91 PTSPPVQETLLTETGTNPSVQEVKDAKKIPVPSQNAAPKKEDGSRSYEPPG--MIAPGDA 148 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+S + F TF+ G+SNR A AA ++AE Y NP F++ VGLGKTHL+ A Sbjct: 149 SSLNSHYTFDTFVTGNSNRFAHAAALAVAESPGRVY-----NPFFMYGGVGLGKTHLMHA 203 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + +++ P +RV+Y+++E F ++IRD + + RNID+LL+DD+QFL K Sbjct: 204 IGHKILEKFPQMRVLYISSEKFTNELINSIRDGNPESFRQKYRNIDVLLVDDIQFLSKKE 263 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L D+ K ++ ++DR P E+++L+ R+RSR + G+ + D E R + Sbjct: 264 HTQEEFFHTFNTLHDANKHIILSSDRHPREIQTLEDRLRSRFEWGLITDIQAPDLETRIA 323 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + A+ L++ +V+ +A + + REL+GA ++V S P+ T+ + Sbjct: 324 ILRKKAALEH-----LDVPNDVMFSIANRIDNNIRELEGALTRVVAYASLTKQPVTTS-L 377 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 +E L+++ +T+++ +E IQ +VA ++ + +DL +R R + PRQ+AMYL + + Sbjct: 378 VNEALANIFPEEKTREVTMELIQEVVASYFKLRLDDLHGKKRTRNLAMPRQIAMYLCREL 437 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRLIS 501 T S P+IG FG RDHTTV+HA K+ K + D L + +E L++R+ S Sbjct: 438 TGNSLPQIGNSFGGRDHTTVIHACDKIGKERKEDSKLDRTIEQLMQRIES 487 >gi|332186224|ref|ZP_08387969.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. S17] gi|332013592|gb|EGI55652.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. S17] Length = 519 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 162/501 (32%), Positives = 265/501 (52%), Gaps = 54/501 (10%) Query: 42 VSSRLKNQVGPDVYASWFQRLKF-HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE 100 V + L+ G ++ W + ++ + V L++P+ F W+++ Y + + F+ Sbjct: 25 VRANLRESAGARLFDQWLKPMELIEGDEPDTVRLALPSAFATNWVRSHYADRLHLEFKAV 84 Query: 101 HSRIQGVEILVRS----VALPSVEKTASSP------SITKLSPINTNISKSPIILGKQ-- 148 ++ V I R+ L SVE ++P S ++SP P + Sbjct: 85 LPEVRAVMIETRAPSRAAKLTSVETLDATPAPRAAVSRVEVSPEPVESDDQPSLFAVPTP 144 Query: 149 --------------------TISPVFG---------SPLDSRFVFSTFIEGSSNRVALTA 179 +++PV PLD R F F+ SSNRVA A Sbjct: 145 AKPARPAPAPAPATRAAKVASVAPVPAVPLRSASDRPPLDPRLTFDRFVVDSSNRVAFNA 204 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A S+AE R +PLF+H G GKTHL+ AIA+A ++ P V+ ++AE FM+ Sbjct: 205 ALSLAE-----PGLPRFSPLFLHGGTGQGKTHLMHAIAHAFLESHPEAVVLCMSAERFMF 259 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 F +A+R + K LR+ DLLLIDD+QF+ GK Q EF H +N L+ + K++V +A Sbjct: 260 DFVAAMRARDTHSFKTRLRSADLLLIDDLQFIAGKDSTQEEFFHTVNELVSAGKRLVISA 319 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DR P L+ ++PRI RL G+ + D +R +IL +++ + P + + +VL Sbjct: 320 DRSPQSLDGMEPRIIGRLGAGLVADIKAPDLTLRRTILNRKVS----DLPDIVVPNDVLD 375 Query: 359 HVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A + + REL+GA N++V + + E A L ++ G +++ I++IQ++ Sbjct: 376 LLASRIRGNIRELEGALNRVVAYAQLTGEKIDLEFAVATLGEVLR-GAQRRITIDEIQKL 434 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 V++H+ + DL+S RR R + RPRQ+AMYL+K +T RS PEIGR+FG RDH+TV++AVR Sbjct: 435 VSRHFELKPLDLVSARRARAIARPRQIAMYLAKRLTTRSLPEIGRKFGGRDHSTVIYAVR 494 Query: 478 KVEKMLETDITLKKEVELLKR 498 K+E++ +TD + V +L + Sbjct: 495 KIEELRDTDRDIDNAVRVLMK 515 >gi|160941462|ref|ZP_02088797.1| hypothetical protein CLOBOL_06353 [Clostridium bolteae ATCC BAA-613] gi|158435608|gb|EDP13375.1| hypothetical protein CLOBOL_06353 [Clostridium bolteae ATCC BAA-613] Length = 456 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 149/456 (32%), Positives = 251/456 (55%), Gaps = 37/456 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY----LETITKLFQEEHSRIQGVEIL 110 Y++W + LK HS N V + VP ++ +Y TI++ ++E V+ Sbjct: 27 YSTWLEPLKPHSFKDNTVTIIVPEQTFLQYVNKKYGFLLKVTISEFLEKECE----VDFK 82 Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 V+ + + E A P + K N S SP ++ ++P ++ F TF+ G Sbjct: 83 VKEQIVEAEEPAA--PQLIK----NNKASVSPDVIQSANLNP--------KYTFDTFVVG 128 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 +N +A AA ++AE Y NPLFI+ VGLGKTHL+ AIA+ +K +++ Sbjct: 129 GNNNLAHAAALAVAESPGEIY-----NPLFIYGGVGLGKTHLMHAIAHFILKNNAKSKIL 183 Query: 231 YLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 Y+T+E F AIR+ ++ RN D+LLIDD+QF+ GK Q EF H N+ Sbjct: 184 YVTSETFTNELIDAIRNKNNITTTEFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNT 243 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 L +S KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R +IL+ + +E Sbjct: 244 LYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETRMAILRKK-----EE 298 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGE 405 NI+ EV+ ++A + ++ REL+GA ++V +T E+A+E L +++ Sbjct: 299 MEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLNKCDITLELAEEALKDIISPNA 358 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 +++ + I ++V+ H+ ++ D+ S +R + +V PRQ+ MYL + MT IGR G Sbjct: 359 QREVTPDLIIQVVSDHFGLTPLDISSQKRNKEIVYPRQIVMYLCRDMTATPLQTIGRYLG 418 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTT++H K+ + D TL+ +E+LK+ I+ Sbjct: 419 GRDHTTIIHGAEKITGDMAKDDTLRNTIEILKKKIN 454 >gi|282856283|ref|ZP_06265564.1| chromosomal replication initiator protein DnaA [Pyramidobacter piscolens W5455] gi|282585860|gb|EFB91147.1| chromosomal replication initiator protein DnaA [Pyramidobacter piscolens W5455] Length = 438 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 143/424 (33%), Positives = 231/424 (54%), Gaps = 37/424 (8%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP 133 L +F+ +K+ +L T+ + Q + + G++++ S + + E + PS SP Sbjct: 43 LDAGNSFVAKKVKDSFLATLESVMQRK-GKGSGIDLVYDSKPVGAEE---ALPSPQPHSP 98 Query: 134 INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 I +N L+ ++ F++F+ G SNR+A A+ ++AE Y Sbjct: 99 IGSN-------------------GLNRQYDFTSFVVGKSNRLAHAASLAVAESPGEAY-- 137 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPLFI VGLGKTHL+ AI N + + N +V YL++E F +AI++ Sbjct: 138 ---NPLFIWGGVGLGKTHLMHAIGNYAQGKNGNTKVTYLSSEKFTNELITAIKNARTAEF 194 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + R++D+LLIDD+QFL GK Q EF H N L KQ+V ++DRPP EL ++ RI Sbjct: 195 RAKYRHVDILLIDDIQFLAGKESTQDEFFHTFNDLHTEHKQIVLSSDRPPKELGDIEDRI 254 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 SR + G+ + DYE R +ILK + E ++ +N++V+ +A + ++ REL+ Sbjct: 255 ISRFEWGLVTDIQQPDYETRIAILKKK-----AEQRRIPVNDDVIGFLAENIPSNIRELE 309 Query: 373 GAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 GA N+++ +F+ PI T E E L ++ +G + + I +V+ + S D+ Sbjct: 310 GALNRVIASANFSQEPI-TIENTQEWLKDVIGSGRRGLLTFQSIMDVVSSEFGFSPEDIC 368 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 S RR V RQVAMY+ +I T S +I + FG +DHTTVLHA++K+E +++ D +K Sbjct: 369 SKRRTAEVALARQVAMYMCRIHTESSLQQIAKDFGKKDHTTVLHALKKIEMLMKEDARVK 428 Query: 491 KEVE 494 K VE Sbjct: 429 KIVE 432 >gi|240950075|ref|ZP_04754377.1| chromosomal replication initiation protein [Actinobacillus minor NM305] gi|240295450|gb|EER46205.1| chromosomal replication initiation protein [Actinobacillus minor NM305] Length = 446 Score = 236 bits (602), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 162/474 (34%), Positives = 253/474 (53%), Gaps = 40/474 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++T S LK +V Y W + L+ S + + L F++ +K+ +L I L Sbjct: 3 SLWTDCLSHLKTKVSDTEYNIWLRPLQ-PSFSNGELTLYAQNPFVEKHVKDHFLAEIIDL 61 Query: 97 FQEEHSRIQGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + SR + + R PS E++ S+P+ + G+ +P F Sbjct: 62 ARF-LSRNDQLVVSTRIGIRPSEQAERSVSAPAAS----------------GENLGTPTF 104 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAE--VDSHGYTTVRLNPLFIHASVGLGKTHL 212 S +D F F++G SN++A AQ + +SH NP ++AS GLGKTHL Sbjct: 105 RSGIDPTQRFDNFVQGRSNQLAKAVAQQVVSDLGESH------CNPFSLYASTGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--ALNLKDSLRNIDLLLIDDMQF 270 L AI NA K+ P+LRV+Y+ +E F AI N A LK R++D+L+IDD+QF Sbjct: 159 LHAIGNALQKKDPSLRVLYIHSERFYRDILKAINTNSNEADKLKKFYRSLDVLMIDDIQF 218 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L K +Q EF HL N+L + KQ+V ++ P +E +D I+SRL G+S + + Sbjct: 219 LADKPKVQEEFLHLFNALFEQKKQIVLTSNVFPKNIERIDDAIKSRLSWGISSTIEPPEL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PI 387 E R +IL+ + E+ +I+EE + + + T REL+GA N+++ PI Sbjct: 279 ETRVAILRKK-----AEERGADISEEATYLMGQKLRTHVRELEGALNRVIAWQKLTHRPI 333 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + + L + + + IE+IQR+VA++YNI D+ S R RT+ RPRQ+AM Sbjct: 334 TVDAVRETLRDMFASYDQL--ITIENIQRVVAEYYNIKLTDIKSKSRTRTIARPRQMAMA 391 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIGR FG RDHTTV+HA + + ++ ET+ T++++ L R +S Sbjct: 392 LAKELTNHSLPEIGREFGGRDHTTVMHACKTISELRETESTIQEDYTNLTRKLS 445 >gi|55981942|ref|YP_145239.1| chromosomal replication initiation protein [Thermus thermophilus HB8] gi|14194700|sp|Q9X9D5|DNAA_THET8 RecName: Full=Chromosomal replication initiator protein DnaA gi|4572641|emb|CAB40110.1| initiator protein DnaA [Thermus thermophilus] gi|55773355|dbj|BAD71796.1| chromosomal replication initiator protein DnaA [Thermus thermophilus HB8] Length = 436 Score = 236 bits (601), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 257/472 (54%), Gaps = 47/472 (9%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ V ++ + + +WF+R++ + ++ L+VPT+F WI+ Y I + Sbjct: 4 EAVWQHVLEHIRRSITEVEFHTWFERIRPLGIRDGVLELAVPTSFALDWIRRHYAGLIQE 63 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 ++ E+ V +P V I + +P K Sbjct: 64 ALGLLGAQAPRFELRV----VPGV---VVQEDIFQAAPAEAPRPK--------------- 101 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ A Sbjct: 102 --LNPKYTFENFVVGPNNSMAHAAAVAVAESPGRAY-----NPLFIYGGVGLGKTHLMHA 154 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + ++ KR P+LR+ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ GK Sbjct: 155 VGHSVAKRFPHLRIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIAGKE 214 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D E R + Sbjct: 215 RTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIA 274 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 ILK E L I E+ L ++AR VT++ REL+GA + + +FA + LT Sbjct: 275 ILK-----MNAEQRGLRIPEDALEYIARQVTSNIRELEGALMRAI---AFASLNGVELTR 326 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + LS + E + +E I R VA H+ + +L + R + VV PRQ+AMYL + Sbjct: 327 AVAAKALSDIFAPRELEADPLE-IIRKVADHFGLKPEELTGSGRKKEVVLPRQLAMYLVR 385 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S PEIG+ FG RDHTTVL+A++KV+++ E+D +EV+ L R + E Sbjct: 386 ELTRASLPEIGQLFGGRDHTTVLYAIQKVQELAESD----REVQGLLRTLRE 433 >gi|256851674|ref|ZP_05557062.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 27-2-CHN] gi|260661609|ref|ZP_05862521.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 115-3-CHN] gi|256615632|gb|EEU20821.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 27-2-CHN] gi|260547666|gb|EEX23644.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 115-3-CHN] Length = 455 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 157/482 (32%), Positives = 253/482 (52%), Gaps = 44/482 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + + + +++ + Y +WF+ K V + TN L +KN I Sbjct: 3 DLQKFWDYFNKQMRQEYNEVAYNAWFKNTK-------PVSYNKETNELVIAVKN----PI 51 Query: 94 TKLFQEEH---SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 K + E + IQ LP E P+ +P + P + ++++ Sbjct: 52 AKGYWEANLSTKLIQTAYAYGNFEVLPIFEVDGDEPTERFKAP------QPPKKVPERSV 105 Query: 151 SPVFGS------PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 SPV L+ ++ F TF++G N++A AA ++A+ Y NPLFI Sbjct: 106 SPVKDDFVAKNLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFY-----NPLFIFGG 160 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL Sbjct: 161 VGLGKTHLMQAIGHQMLCERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLL 220 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V Sbjct: 221 VDDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVE 280 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R +IL+ + E L I+++ L ++A V+T+ REL+GA LV + Sbjct: 281 ITPPDLETRIAILRKK-----AESEGLVIDDDTLDYIASQVSTNIRELEGA---LVKVQA 332 Query: 384 FAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 A I A+I A + L+ L +++ ++I IQ +VA ++ + N+L +RVR +V Sbjct: 333 HATIEKADINVNLARDALTDLKLVQKSRGLQISKIQEVVANYFQTTVNELKGKKRVRQIV 392 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PRQ+AMYLS+ +T S +IG+ FG +DHTTV+HA K+EK + TD +K V LK+L Sbjct: 393 VPRQIAMYLSRDLTDASLQKIGQEFGGKDHTTVMHAYEKIEKDIRTDAEIKSAVYELKQL 452 Query: 500 IS 501 + Sbjct: 453 LD 454 >gi|169335349|ref|ZP_02862542.1| hypothetical protein ANASTE_01761 [Anaerofustis stercorihominis DSM 17244] gi|169258087|gb|EDS72053.1| hypothetical protein ANASTE_01761 [Anaerofustis stercorihominis DSM 17244] Length = 456 Score = 236 bits (601), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 119/339 (35%), Positives = 211/339 (62%), Gaps = 13/339 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 + ++ F +F+ G +NR A A+ ++A+ + Y NPLFI+ VGLGKTHL+ AIA Sbjct: 119 FNPKYTFDSFVVGPNNRFAHAASLAVADAPAKKY-----NPLFIYGGVGLGKTHLMHAIA 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 +++ P +VV L++E F+ F AI++ + ++ RN D+LLIDD+QF+ GK Sbjct: 174 QHILRKDPTKKVVLLSSEQFLNEFLDAIQNKTNVQFRNKYRNADVLLIDDIQFIAGKNET 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q+EF H N+L S KQ++ +D+PP E+ L+ R+RSR G+ + + D+E R +IL Sbjct: 234 QNEFFHTFNALQGSNKQIILTSDKPPKEIPHLEDRLRSRFSLGLICDISMPDFETRLAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADE 395 + + ++ ++ E+L ++A + ++ REL+G +++ + F LT ++ + Sbjct: 294 RKK-----AKEENYQVSNEILNYIAENIESNIRELEGLLLKVMALNEFYNKPLTLDLVKK 348 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L +++ + KK+ ++ I ++V +YNIS+ D+LS RR + + PRQ++MYLS+ +T Sbjct: 349 QLKDIIDISD-KKISMDLITKVVCDYYNISKADILSKRRTKNIAFPRQISMYLSRELTDS 407 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S P IG +G RDH+TV+H K+++ L+T+ TL++E++ Sbjct: 408 SLPAIGDYYGGRDHSTVIHGYDKIKEELKTNGTLEEEIK 446 >gi|46199910|ref|YP_005577.1| chromosomal replication initiator protein dnaA [Thermus thermophilus HB27] gi|46197537|gb|AAS81950.1| chromosomal replication initiator protein dnaA [Thermus thermophilus HB27] Length = 446 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 156/480 (32%), Positives = 259/480 (53%), Gaps = 41/480 (8%) Query: 25 DVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAW 84 D D ++ E+++ V ++ + + +WF+R++ + ++ L+VPT+F W Sbjct: 3 DRDDGGGRLSHEAVWQHVLEHIRRSITEVEFHTWFERIRPLGIRDGVLELAVPTSFALDW 62 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 I+ Y I + ++ E+ V +P V I + +P K Sbjct: 63 IRRHYAGLIQEALGLLGAQAPRFELRV----VPGV---VVQEDIFQAAPAEAPRPK---- 111 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ Sbjct: 112 -------------LNPKYTFENFVVGPNNSMAHAAAVAVAESPGRAY-----NPLFIYGG 153 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ A+ ++ KR P+L++ Y++ E F +AIR++ ++ R++DLLL Sbjct: 154 VGLGKTHLMHAVGHSVAKRFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLL 213 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ Sbjct: 214 VDDVQFIAGKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITD 273 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R +ILK E L I E+ L ++AR VT++ REL+GA + + S Sbjct: 274 IQPPDLETRIAILK-----MNAEQRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFAS 328 Query: 384 FAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + LT +A + LS + E + +E I R VA H+ + +L + R + VV PR Sbjct: 329 LNGVELTRAVAAKALSDIFAPRELEADPLE-IIRKVADHFGLKPEELTGSGRKKEVVLPR 387 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AMYL + +T S PEIG+ FG RDHTTVL+A++KV+++ E+D +EV+ L R + E Sbjct: 388 QLAMYLVRELTRASLPEIGQLFGGRDHTTVLYAIQKVQELAESD----REVQGLLRTLRE 443 >gi|325282256|ref|YP_004254797.1| Chromosomal replication initiator protein dnaA [Deinococcus proteolyticus MRP] gi|324314065|gb|ADY25180.1| Chromosomal replication initiator protein dnaA [Deinococcus proteolyticus MRP] Length = 494 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 152/467 (32%), Positives = 255/467 (54%), Gaps = 24/467 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + I++ V + ++N + Y +WF +K V + L V +F + W + YLE + Sbjct: 37 SQEIWSDVLAYVRNNISEVEYHTWFAPVKTLGVREGSLVLGVRNSFAQEWFRKHYLELL- 95 Query: 95 KLFQEEHSRIQGVE-ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E+ R G E V LP+V++ P +P + P+ + + P Sbjct: 96 ----EDALRSLGAEHPQVSFEVLPAVQEAMILPEAAAPTP-KVAAAPQPV---RSSPDPE 147 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 148 LSKILNPKYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLGKTHLM 202 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ + ++ P R+ Y++ E F ++IRD+ +D R++DLLL+DD+QFL Sbjct: 203 HAVGHYLAEKYPEKRIAYVSTESFTNELINSIRDDKTTQFRDRYRSVDLLLVDDIQFLAR 262 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ + ++E R Sbjct: 263 KERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETR 322 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +ILK E +NI +EVL +AR VTT+ REL+GA ++V S + + Sbjct: 323 VAILK-----MNAEQANINIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPFSRA 377 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + LS++ E ++ + ++ R A+ + ++ + R R +V PRQ+AMYL + Sbjct: 378 VASKALSNVFAPQEL-QVEMSEVVRAAAQLFEVTTEQIRGTGRARDIVVPRQIAMYLIRE 436 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +TP S PEIG+ FG RDH+TV+HAV KV + ++ D + +V L+R Sbjct: 437 LTPHSLPEIGQYFG-RDHSTVMHAVSKVSESIKKDEEMAAQVSRLRR 482 >gi|332304387|ref|YP_004432238.1| chromosomal replication initiator protein DnaA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171716|gb|AEE20970.1| chromosomal replication initiator protein DnaA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 476 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 159/495 (32%), Positives = 262/495 (52%), Gaps = 47/495 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE RL+ + ++ W + L + + L P F+ W++++ Sbjct: 6 RCLE------------RLQQDLPTQQFSMWIRPLVANEE-SGAITLFAPNRFVLDWVRDK 52 Query: 89 YLETITKLFQE--EHSRIQGVEILVRSV------ALPSVEKTASSPSITK-----LSPIN 135 Y+ I LF E + + + I V+S + P+ TAS+ S+ + L Sbjct: 53 YIAQIEALFVEFCTNDAVPQLRIEVKSATNNVQQSNPASVATASTSSVVENSIKSLQKHQ 112 Query: 136 TNISKSPIILGKQTISP------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 T S + + +P S ++ + F F+EG SN++A A++ +++ Sbjct: 113 TARSSASSQTETNSATPNAKLAASHKSNINFNYKFDNFVEGKSNQLARAASKQVSDNPGK 172 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLFI+ GLGKTHLL A+ N I + + VVY+ +E F+ A+++N Sbjct: 173 AY-----NPLFIYGGTGLGKTHLLHAVGNGIIDNKNDATVVYMHSERFVQDMVKALQNNA 227 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E++ + Sbjct: 228 IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGV 287 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R++SR G+++ + + E R +IL + + + K+ + +EV +A+ + ++ Sbjct: 288 EDRLKSRFGWGLTIAIEPPELETRVAIL-----MRKALENKIILPDEVAFFIAKRLRSNV 342 Query: 369 RELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ VA++Y I Sbjct: 343 RELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKM 400 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+LS RR R+V RPRQ+AM LSK +T S PEIG FG RDHTTVLHA RK+ ++ E Sbjct: 401 ADILSKRRSRSVARPRQMAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIVQLREES 460 Query: 487 ITLKKEVELLKRLIS 501 +K++ + L R +S Sbjct: 461 HDIKEDYQNLIRTLS 475 >gi|206900692|ref|YP_002251513.1| chromosomal replication initiator protein DnaA [Dictyoglomus thermophilum H-6-12] gi|206739795|gb|ACI18853.1| chromosomal replication initiator protein DnaA [Dictyoglomus thermophilum H-6-12] Length = 441 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/466 (31%), Positives = 252/466 (54%), Gaps = 43/466 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + +SI+ S L ++ + +W + LK ++ + L P F K W++ YL I Sbjct: 3 DIKSIWEEALSYLSLEISRPGFETWIKTLKPLTLEGGKIVLQTPNKFSKDWLEEYYLPLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ ++ + VEIL EK + P K+ ++T+ + Sbjct: 63 EEVIRKVTQKDFKVEILAE-------EKEDNIPEEKKVEYLSTSYNN------------- 102 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G SNR A AA ++++ Y NPL I+ VGLGKTHL+ Sbjct: 103 ----LNPKYTFDTFVVGDSNRFAHAAALAVSQNPGKAY-----NPLLIYGGVGLGKTHLI 153 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI ++ ++ P RVVY + E F AI+++ ++ RNID+LLIDD+QFL G Sbjct: 154 HAIGHSIQEKYPKARVVYASMEKFTVELIDAIKEDGMTKFRNRYRNIDVLLIDDIQFLAG 213 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + N+L ++ KQ+V +DR P E+ +L+ R+RSR + G+ + D E R Sbjct: 214 KERTQEEFFYTFNALYEAGKQIVLTSDRVPKEIPTLEDRLRSRFEWGLIADIQPPDLETR 273 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----L 388 +ILK + + + P +EV+ +A + ++ REL+GA L+ +FA + + Sbjct: 274 IAILKKKAEAEKAKVP-----DEVIEFIASQIQSNIRELEGA---LIRTIAFASLNNMPI 325 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A +L ++ + K + +++I + V++++NIS L R + + PRQ+AMYL Sbjct: 326 NLELAKTVLKDIIQP-QIKNITMQNILQAVSEYFNISIEQLKGKGRSQEIAIPRQIAMYL 384 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 ++ +T S P+IG G RDHTTVLHA K++++ +TD+++KK ++ Sbjct: 385 ARTLTDLSLPKIGEELGGRDHTTVLHAYEKIQELYQTDLSIKKAIQ 430 >gi|110832862|ref|YP_691721.1| chromosomal replication initiator protein DnaA [Alcanivorax borkumensis SK2] gi|123345870|sp|Q0VT30|DNAA_ALCBS RecName: Full=Chromosomal replication initiator protein DnaA gi|110645973|emb|CAL15449.1| chromosomal replication initiator protein DnaA [Alcanivorax borkumensis SK2] Length = 474 Score = 235 bits (600), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 168/498 (33%), Positives = 273/498 (54%), Gaps = 56/498 (11%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI-VHLSVPTNFLKAWIKNRYLETI 93 E ++ +RL++++ + W + L+ + + L P F+ W++++YL+ I Sbjct: 2 SEELWQRCLTRLEDELPSQQFNMWIRPLQVAASADGAELTLFAPNRFVVDWVRDKYLDRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVE-----KTASSPSITKLSPI-------------- 134 +++ E ++S LP + AS+P+ + + Sbjct: 62 SEVLGE-----------MQSGPLPQLRLEVGSTRASTPAASYFNGSSSSSSNGPITTPAA 110 Query: 135 -------NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE-V 186 ++ P LG + S L++ F FSTF+EG SNR+A AAQ +AE Sbjct: 111 APAPRQPESDSRPQPTSLGG---ARKHRSNLNTGFTFSTFVEGKSNRMAAAAAQQVAENP 167 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 SHGY NPL ++ VGLGKTHL+ A+ N ++R PN +VVYL +E F+ SA+R Sbjct: 168 ASHGY-----NPLLLYGGVGLGKTHLMHAVGNELLRRNPNAKVVYLHSERFVADMISALR 222 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K R++D LLIDD+QF GK Q EF H N+LL++ +Q++ D+ P E+ Sbjct: 223 NKTINEFKRFYRSVDALLIDDIQFFAGKEQSQEEFFHTFNALLENGQQIILTCDKFPKEV 282 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 + L+ R++SR G+S P+ + E R +ILK + E+ K+++ + +A+ + Sbjct: 283 DGLEERLKSRFGWGLSQPMEPPELETRVAILKKK-----AEEAKVDLPNDAAFFIAQRIR 337 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA +++ F + + E L L+ + +++ I++IQR+VA++Y I Sbjct: 338 SNVRELEGALRRVIAHVRFTGAQIDIGLIKEALKDLIAL-QARQISIDNIQRIVAEYYKI 396 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 NDLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RKV ++ E Sbjct: 397 KINDLLSPRRTRSVARPRQVAMALSKELTSHSLPEIGENFGGRDHTTVLHACRKVLELRE 456 Query: 485 TDITLKKE-VELLKRLIS 501 ++ ++++ + LL+ L S Sbjct: 457 SNPEIEEDYLNLLRTLTS 474 >gi|218134376|ref|ZP_03463180.1| hypothetical protein BACPEC_02270 [Bacteroides pectinophilus ATCC 43243] gi|217989761|gb|EEC55772.1| hypothetical protein BACPEC_02270 [Bacteroides pectinophilus ATCC 43243] Length = 342 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 133/351 (37%), Positives = 216/351 (61%), Gaps = 20/351 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F TF+ G++N +A AA ++AE H Y NPLFI+ GLGKTHL+QAIA Sbjct: 3 LKPNYTFETFVVGNNNNLAHAAALAVAETPGHVY-----NPLFIYGGAGLGKTHLMQAIA 57 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN--LKDSLRNIDLLLIDDMQFLQGK- 274 + ++ P+L+V+Y+T+E F ++++ N ++ RNID+LLIDD+QF+ GK Sbjct: 58 HFIMQNNPDLKVLYVTSETFTNELIESLKNQKMTNQEFRNKYRNIDVLLIDDIQFIIGKE 117 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L D+ KQ+V ++D+PP E+E+L R+R+R + G++ + + YE + + Sbjct: 118 STQEEFFHTFNALYDANKQIVISSDKPPKEMETLTERLRTRFEMGLTADIQIPTYETKMA 177 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 IL + E NI ++V +VA + +S REL+GA +LV +F+ + LT Sbjct: 178 ILNKK-----SEAEGYNIPDDVKDYVATHIKSSIRELEGALTKLV---AFSTLSHQPLTV 229 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A++ L L++ + +++ E I ++VA H+N++ D++S +R + +PRQ+AMYL + Sbjct: 230 EFAEDTLKDLISPEDKREVTPELIIQIVADHFNLTPEDIISQKRNAEISKPRQIAMYLCR 289 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT +IGR FG+RDHTT+LH RKV K + I + +E+L + I+ Sbjct: 290 TMTDTPLEQIGRYFGNRDHTTILHGYRKVNKEVTNSIETRSLIEILIKKIN 340 >gi|325969850|ref|YP_004246041.1| Chromosomal replication initiator protein dnaA [Spirochaeta sp. Buddy] gi|324025088|gb|ADY11847.1| Chromosomal replication initiator protein dnaA [Spirochaeta sp. Buddy] Length = 473 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 252/469 (53%), Gaps = 29/469 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 +SR+K+ + + +WF R+ + V L+ + F+ + RY + I E Sbjct: 15 TASRIKDTLPEQEFNTWFNRIAYLKSEDKKVILAGASQFILDTVIARYRDLIVNTLSELT 74 Query: 102 SRIQGVEILVRSVA-LPSVEKTASSPSIT--KLSPINTNISKSPIILGKQTISPVFGSPL 158 VE V S + + + K + K P+ T P I ++T+ S L Sbjct: 75 GEDINVEFAVISRSEIEQINKPEGNAKEKEEKQEPVQT--QAKPKISNEKTLRMKVESNL 132 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + + F F+ G ++ A A+ +IA+ Y NP I+ VGLGKTHLL +I N Sbjct: 133 NPSYDFGNFVIGDNSAFAYNASLAIAKNPGSSY-----NPCLIYGGVGLGKTHLLNSIGN 187 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 I P L+V+Y+TAE F F +I + K+ R +D+LLIDD+ FLQGK Q Sbjct: 188 FIINNTPELKVMYVTAEMFTNEFIESIGSQKTQHFKNKFRKVDVLLIDDIHFLQGKDSTQ 247 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E H N+L +S KQ+V DRP SEL+++ R+ SR + G++V L +YE R +ILK Sbjct: 248 EELFHTFNNLYESKKQMVFTCDRPISELKNITDRLSSRFERGLNVDLQPPNYETRMAILK 307 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----A 393 +L + +++EE+L ++A V T+ R+L+ + +L+ +++ +L+ EI A Sbjct: 308 KKLI-----ERGSSMSEEILNYIATNVCTNVRDLESSLTKLI---AYSELLSQEISFDKA 359 Query: 394 DELLSHL----VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ELL L N +T + I+ I ++V +++N+S ++ ++ +++++PRQ+AMYLS Sbjct: 360 KELLGILPSLAANANQT--LSIDTIIKVVGEYFNVSSFEIKGKKKNKSLIQPRQIAMYLS 417 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + +T S EIG FG RDHTTV+HA ++E +++ D V+ LKR Sbjct: 418 RDITEYSTTEIGTEFGGRDHTTVMHAYDRIESLMKGDEAFANTVQKLKR 466 >gi|291536990|emb|CBL10102.1| chromosomal replication initiator protein DnaA [Roseburia intestinalis M50/1] gi|291539806|emb|CBL12917.1| chromosomal replication initiator protein DnaA [Roseburia intestinalis XB6B4] Length = 452 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 124/351 (35%), Positives = 216/351 (61%), Gaps = 15/351 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F TF+ GS+NR A +A+ ++AE Y NPL+I+ GLGKTHL+ + Sbjct: 110 SNLNPNYTFDTFVVGSNNRFAQSASLAVAESPGEAY-----NPLYIYGGPGLGKTHLMHS 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDN--CALN-LKDSLRNIDLLLIDDMQFLQ 272 I + ++R PN +V+Y+T+E F +IR A+N L++ R ID+L++DD+QF+ Sbjct: 165 IGHFILERNPNAKVLYVTSEEFTNEVIESIRSGNASAMNKLREKYRTIDVLMVDDVQFII 224 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + KQ++ +D+PP ++E+L+ RIRSR + G+ +G DYE Sbjct: 225 GKESTQEEFFHTFNALHSAGKQIILTSDKPPKDMETLEDRIRSRFEWGLIADIGTPDYET 284 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ ++ + +D KL+ +E+L ++A + ++ REL+GA N+L+ + +T Sbjct: 285 RMAILRRKV---EADDMKLS--DEILNYIATNIKSNIRELEGALNKLLAYSNLEKTDITM 339 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 EIA + L +++ + +++ + + +V +H+NIS + ++S R + RPRQ+AMYL K Sbjct: 340 EIAMKELQNIITPDKPREITPQLVIEVVTEHFNISLDQMISKNRSNEIARPRQIAMYLCK 399 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT IG+ G RDH+T++H ++K+ E++ + +E +K+ I+ Sbjct: 400 NMTDIPLDSIGQLLGGRDHSTIIHGIKKIADEYESNENTRNLIETIKKKIN 450 >gi|291547605|emb|CBL20713.1| chromosomal replication initiator protein DnaA [Ruminococcus sp. SR1/5] Length = 455 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 132/349 (37%), Positives = 212/349 (60%), Gaps = 15/349 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ GS+N+ A AA ++AE Y NPLFI+ GLGKTHL+ +IA Sbjct: 114 LNPKYTFDTFVVGSNNKFAQAAALAVAESPGDTY-----NPLFIYGGAGLGKTHLMHSIA 168 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALN-LKDSLRNIDLLLIDDMQFLQGK 274 + ++ N RV+Y+T+E F IR+ N A++ ++ RNID+LL+DD+QF+ GK Sbjct: 169 HFILEHDENSRVLYVTSEEFTNELIETIRNGNNTAMSKFREKYRNIDVLLVDDIQFIIGK 228 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H NSL + KQ++ ++D+PP ++E L+ R RSR + G+ + L DYE R Sbjct: 229 ESTQEEFFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRM 288 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL +E NI+E+V+ ++A + ++ REL+GAFN+++ +T E+ Sbjct: 289 AILH-----KNEEMNGYNISEDVIKYIATNIKSNIRELEGAFNKVMAGAKLEKKEVTLEL 343 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A++ L +++ E K + E I +VA+HY ++ DL N+R +V PRQV+MYL + + Sbjct: 344 AEQALKDIISPDEKKVITPEYIISVVAEHYGVTPADLSGNKRNSKIVMPRQVSMYLCREI 403 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG+ G+RDHTTV+H + K+E L+ D LK +++LK+ I+ Sbjct: 404 ISTPLKNIGKALGNRDHTTVMHGIEKIENELQNDDNLKNTIDILKKKIN 452 >gi|284047389|ref|YP_003397728.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] gi|283951610|gb|ADB46413.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] Length = 462 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 154/454 (33%), Positives = 241/454 (53%), Gaps = 33/454 (7%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 W ++ N + L VP +F K ++ +YL + +E S+I G + V + Sbjct: 29 WLDAAHPRTLEENTLSLDVPNDFTKNTLQEKYL----PIMEESLSQICGKPM---KVQID 81 Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTIS-PV--FGSPLDSRFVFSTFIEGSSNR 174 VE PS+ +P + + Q + P F S L ++ F FI G SN Sbjct: 82 VVETAKEGPSLFPDAPAQPAPEPAAVQPEPQPAAKPAQEFDSHLSPKYTFDNFIRGKSNE 141 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A + +A + Y NPLF+++ GLGKTHL+ AI N K+ P ++++Y ++ Sbjct: 142 EAFNFSMGVANAPAKSY-----NPLFLYSDPGLGKTHLMNAIGNYIHKKFPQMKILYTSS 196 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F AI+ N ++ RNID+LLIDD+QFL+ K Q EF H +L + KQ Sbjct: 197 ETFTNELIGAIQHNTNEAFRNKYRNIDVLLIDDIQFLRKKESTQEEFFHTFEALKQADKQ 256 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP EL++L+ R+ SR G+ + + D+E R +IL+ S E L Sbjct: 257 IIISSDRPPKELDTLEERLTSRFMQGLIIEINHPDFETRSAILR-----SMAEKDHLEFP 311 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHL-VNTGETKK 408 EV+ +A V T+ REL+GA+ ++ H+FA + +T E+A + L L + + K Sbjct: 312 LEVIQLIATNVKTNIRELEGAYTKV---HAFANLNHQPVTMELARKALKDLDMGSAVDKV 368 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + +E IQ +VA Y I DL + +R R++ PRQ+AMYL++ +T S P IG FG RD Sbjct: 369 ITVEAIQELVASRYKIRVEDLKAKKRTRSIAYPRQIAMYLTRELTDLSLPRIGECFGGRD 428 Query: 469 HTTVLHAVRKVEKMLETDITLKKE----VELLKR 498 HTTVLHA K+ + + D L+++ VE LK+ Sbjct: 429 HTTVLHACDKISEDKKNDANLERQLAKLVEDLKK 462 >gi|226326146|ref|ZP_03801664.1| hypothetical protein COPCOM_03965 [Coprococcus comes ATCC 27758] gi|225205688|gb|EEG88042.1| hypothetical protein COPCOM_03965 [Coprococcus comes ATCC 27758] Length = 466 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 144/459 (31%), Positives = 254/459 (55%), Gaps = 32/459 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + L+ + + N ++L+V I+N+YL + E + G E ++ + Sbjct: 26 FETWIRPLEVYEIRGNTLYLTVNFKASIEHIQNKYLLPLKVCIAE----VTGTEYQIKFI 81 Query: 115 A--LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF-GSPLDSRFVFSTFIEGS 171 LP + + K +P+ K + +SP+ + L+ ++ F TF+ G Sbjct: 82 PRDLP---REQQRRYLEKTAPVKEKTHKH------KEVSPIAEKANLNPKYTFDTFVVGG 132 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 +N A A+ ++AE Y NPLF++ VGLGKTHL+ +IA+ + R+P+ +V+Y Sbjct: 133 NNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSIAHYILDREPSKKVLY 187 Query: 232 LTAEYFMWRFASAIRD-----NCALN-LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +T+E F +AIR+ + A+N +D RN D+LLIDD+QF+ GK Q EF H Sbjct: 188 VTSETFTNDLITAIRNGKTGNDLAMNAFRDKYRNNDVLLIDDVQFIIGKESTQEEFFHTF 247 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N L ++ KQ+V ++D+PP ++ +L+ R+R+R + G+ + + DYE R +IL ++ + Q Sbjct: 248 NHLHNAGKQIVISSDKPPKDMTTLEARLRTRFEWGLIADISVPDYETRMAILYKKIELDQ 307 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV--FRHSFAPILTAEIADELLSHLVN 402 E + I +EV+ ++A + T+ REL+G+ N+L+ +R +A E L ++ Sbjct: 308 LE--RYQIPDEVIQYIAMNIKTNIRELEGSLNKLIALYRIGGRKNFDVSLAAEALKDMIA 365 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 ++ K+ E + +V+ H+N+S ++L +RR RQ+ MYL + MT S IG Sbjct: 366 PDDSHKVTPELVLDVVSDHFNVSVSELKGSRRNARTAGARQIVMYLCRQMTDASLQSIGD 425 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDH+TV H V K+ + +E D TL+ +E++++ IS Sbjct: 426 LLGGRDHSTVNHGVDKIARDVEKDETLRNTIEIIQKKIS 464 >gi|315187335|gb|EFU21091.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6578] Length = 452 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 156/454 (34%), Positives = 246/454 (54%), Gaps = 43/454 (9%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 WF + ++ + + VP++F++ IK RY I F E R ++ +V +L Sbjct: 30 WFFEVDYYDGSEETLRIRVPSSFVRDQIKQRYQRLIEDKFYELLGRKLLLDFVVEKRSLA 89 Query: 118 SVEKTASSPS----ITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 E+ SS S I K P + + + + F F+ G +N Sbjct: 90 Q-ERPVSSSSPQREIPKERPPHPQLRRD--------------------YTFENFVIGENN 128 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 A AA +IA+ Y NP I+ VGLGKTHLLQ+I N+ NL+VVY+T Sbjct: 129 AFAANAALAIAKNPGTAY-----NPCLIYGGVGLGKTHLLQSIGNSVYGEFQNLKVVYVT 183 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAK 292 AE F F ++I++ K RN+D+LLIDD+ F K Q E H N+L D+ K Sbjct: 184 AEEFTNEFIASIQNKETHKFKTKYRNVDVLLIDDIHFFMNKTETQEELFHTFNALYDANK 243 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V DRP SEL+++ R+RSR + G++V L +E R++ILK ++ E ++I Sbjct: 244 QMVFTCDRPVSELKNISHRLRSRFERGLNVDLQPPSFETRYAILKKKI-----EQKPIHI 298 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKK 408 +EV+ +A VTT+ R+L+ A +L+ ++A + +T +IA L + T + Sbjct: 299 PDEVITFIAEHVTTNVRDLEAALTKLI---AYAELVHRDITIDIAKSQLKDMFTTTKQTN 355 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I+ IQ++VA ++ I+++DL + +R RTVV PRQ+AMY+++ +T S EIG FG RD Sbjct: 356 ITIDLIQKVVADYFGITQSDLRNKKRTRTVVFPRQIAMYIARELTEYSTTEIGEYFGGRD 415 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 HTTV++A++K+E + TD TL + L R + E Sbjct: 416 HTTVMYAIQKIESKMRTDPTLDTIIAQLIREVQE 449 >gi|61212638|sp|Q72H87|DNAA_THET2 RecName: Full=Chromosomal replication initiator protein DnaA Length = 436 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 154/469 (32%), Positives = 255/469 (54%), Gaps = 41/469 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ V ++ + + +WF+R++ + ++ L+VPT+F WI+ Y I + Sbjct: 4 EAVWQHVLEHIRRSITEVEFHTWFERIRPLGIRDGVLELAVPTSFALDWIRRHYAGLIQE 63 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 ++ E+ V +P V I + +P K Sbjct: 64 ALGLLGAQAPRFELRV----VPGV---VVQEDIFQAAPAEAPRPK--------------- 101 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ A Sbjct: 102 --LNPKYTFENFVVGPNNSMAHAAAVAVAESPGRAY-----NPLFIYGGVGLGKTHLMHA 154 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + ++ KR P+L++ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ GK Sbjct: 155 VGHSVAKRFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIAGKE 214 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D E R + Sbjct: 215 RTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLETRIA 274 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIA 393 ILK E L I E+ L ++AR VT++ REL+GA + + S + LT +A Sbjct: 275 ILK-----MNAEQRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASLNGVELTRAVA 329 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + LS + E + +E I R VA H+ + +L + R + VV PRQ+AMYL + +T Sbjct: 330 AKALSDIFAPRELEADPLE-IIRKVADHFGLKPEELTGSGRKKEVVLPRQLAMYLVRELT 388 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG+ FG RDHTTVL+A++KV+++ E+D +EV+ L R + E Sbjct: 389 RASLPEIGQLFGGRDHTTVLYAIQKVQELAESD----REVQGLLRTLRE 433 >gi|295108627|emb|CBL22580.1| chromosomal replication initiator protein DnaA [Ruminococcus obeum A2-162] Length = 459 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 152/459 (33%), Positives = 255/459 (55%), Gaps = 30/459 (6%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 VG + +W + LK + V ++++ + VP+ + + N + L Q I G+E Sbjct: 21 VGDVAFNTWLKPLKVYDVRNHVITILVPSE--QVVLINLLNKKYKLLLQVTICEITGMEE 78 Query: 110 LVRSVALP--SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTF 167 P + +K SS S ++I + + L+ +++F TF Sbjct: 79 CEVKFISPDEAPKKEVSSYDNASASTAMSDIDRR-----------CEEAHLNPKYIFDTF 127 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 I G++N+ A AA ++AE Y NPLFI+ GLGKTHL+ +IA+ I+ N Sbjct: 128 IVGNNNKFAQAAALAVAESPGDTY-----NPLFIYGGAGLGKTHLMHSIAHYIIEHDENS 182 Query: 228 RVVYLTAEYFMWRFASAIR--DNCALN-LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 +V+Y+T+E F IR +N A++ ++ RNID+LL+DD+QF+ GK Q EF H Sbjct: 183 KVLYVTSEEFTNELIETIRNGNNSAMSKFREKYRNIDVLLVDDIQFIIGKESTQEEFFHT 242 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 NSL + KQ++ ++D+PP ++E L+ R RSR + G+ + L DYE R +IL + Sbjct: 243 FNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYETRMAILHKK---- 298 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVN 402 +E NI+EEV+ ++A + ++ REL+GAFN+++ +T E+A++ L +++ Sbjct: 299 -EEMEGYNISEEVIKYIATNIKSNIRELEGAFNKVMASSKLEKKEVTLELAEQALKDIIS 357 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 E K + + I +VA+HY+++ DL N+R +V PRQ+AMYL + + S IG+ Sbjct: 358 PNEQKVITPDYIISVVAEHYHVTVADLCGNKRSSKIVMPRQIAMYLCRDIIDTSLKTIGK 417 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 GDRDHTTV+H + K+E L+ + L+ ++ LK+ I+ Sbjct: 418 NLGDRDHTTVMHGIEKIENELKVNDNLRNSIDTLKKKIN 456 >gi|257413825|ref|ZP_04744343.2| DNA replication initiator protein, ATPase [Roseburia intestinalis L1-82] gi|257202158|gb|EEV00443.1| DNA replication initiator protein, ATPase [Roseburia intestinalis L1-82] Length = 456 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 124/351 (35%), Positives = 216/351 (61%), Gaps = 15/351 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F TF+ GS+NR A +A+ ++AE Y NPL+I+ GLGKTHL+ + Sbjct: 114 SNLNPNYTFDTFVVGSNNRFAQSASLAVAESPGEAY-----NPLYIYGGPGLGKTHLMHS 168 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDN--CALN-LKDSLRNIDLLLIDDMQFLQ 272 I + ++R PN +V+Y+T+E F +IR A+N L++ R ID+L++DD+QF+ Sbjct: 169 IGHFILERNPNAKVLYVTSEEFTNEVIESIRSGNASAMNKLREKYRTIDVLMVDDVQFII 228 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + KQ++ +D+PP ++E+L+ RIRSR + G+ +G DYE Sbjct: 229 GKESTQEEFFHTFNALHSAGKQIILTSDKPPKDMETLEDRIRSRFEWGLIADIGTPDYET 288 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ ++ + +D KL+ +E+L ++A + ++ REL+GA N+L+ + +T Sbjct: 289 RMAILRRKV---EADDMKLS--DEILNYIATNIKSNIRELEGALNKLLAYSNLEKTDITM 343 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 EIA + L +++ + +++ + + +V +H+NIS + ++S R + RPRQ+AMYL K Sbjct: 344 EIAMKELQNIITPDKPREITPQLVIEVVTEHFNISLDQMISKNRSNEIARPRQIAMYLCK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT IG+ G RDH+T++H ++K+ E++ + +E +K+ I+ Sbjct: 404 NMTDIPLDSIGQLLGGRDHSTIIHGIKKIADEYESNENTRNLIETIKKKIN 454 >gi|300112746|ref|YP_003759321.1| chromosomal replication initiator protein DnaA [Nitrosococcus watsonii C-113] gi|299538683|gb|ADJ27000.1| chromosomal replication initiator protein DnaA [Nitrosococcus watsonii C-113] Length = 449 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 155/433 (35%), Positives = 235/433 (54%), Gaps = 28/433 (6%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITK 130 + L P F+ W++N I L S RI+ + V S +L P T Sbjct: 38 LRLYAPNQFVIDWVQNCAENRINTLLSHYSSGRIEKALLEVGSCSL--------QPQ-TH 88 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + + ++ P + I + S L+ + F +F+EG SN++ A+ +AE Sbjct: 89 IQTVE--LTSKPTRSSSRVIDRIPESRLNKNYTFDSFVEGKSNQLPRAASHQVAENPGSA 146 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ VGLGKTHL+ A+ N P+ RVVYL +E F+ A++ N Sbjct: 147 Y-----NPLFIYGGVGLGKTHLMHAVGNYIRSLNPSARVVYLHSEQFVAEMIKALQLNAI 201 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 K R++D+LLIDD+QF GK Q EF + N+LL+ Q++ DR P E+ L+ Sbjct: 202 NEFKTRYRSVDILLIDDIQFFAGKERSQEEFFYTFNTLLEVQHQIILTCDRFPKEVNGLE 261 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR G++V + + E R +IL N+ +I + ++++V + R + ++ R Sbjct: 262 ERLTSRFGWGLTVAVEPPELETRVAILMNKASIE-----NIILSDDVAFFLGRLIYSNVR 316 Query: 370 ELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 EL+GA +++ F PI T E+ E L L+ T + K + IE+IQ+ VA++Y I + Sbjct: 317 ELEGALRRVIAYSRFTHRPI-TMELTREALKDLL-TLQEKLVTIENIQKTVAEYYKIRVS 374 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DL S RR RT+ RPRQ AM LSK +T S EIG+ FG RDHTTVLHA RK+ ++ TD Sbjct: 375 DLSSKRRSRTIARPRQTAMLLSKELTDHSLTEIGKFFGGRDHTTVLHACRKINELKGTDR 434 Query: 488 TLKKEVE-LLKRL 499 + ++ + LLKRL Sbjct: 435 RMAEDYQNLLKRL 447 >gi|157273531|gb|ABV27430.1| chromosomal replication initiator protein DnaA [Candidatus Chloracidobacterium thermophilum] Length = 492 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 155/480 (32%), Positives = 253/480 (52%), Gaps = 57/480 (11%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ ++ + +++WF+ + + + ++L VP + WI T+ +QE+ Sbjct: 43 IEKRINHESFSTWFKPVTLQACQGDTIYLRVPNRSYEDWI--------TETYQED----- 89 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS--------- 156 VE +++V + P N + P K T FG Sbjct: 90 -VEEALKAVGCAGARLVFVYAESQEPKPANGLLEDDP---PKPTGDISFGGFDSALSGSI 145 Query: 157 -------------PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 PL+ R+ F TF+ GS N+ A AA ++A+ S Y NPLFI+ Sbjct: 146 TGARIVDLEPLELPLNPRYTFETFVVGSCNQFARAAAMAVADAPSRTY-----NPLFIYG 200 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+ AI +A R ++R+VY+++E FM +AIR + A ++ R+ID+L Sbjct: 201 GVGLGKTHLMHAIGHAIRNRDRHMRLVYISSEKFMNELINAIRYDKAQAFREKYRSIDVL 260 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF+ GK Q EF H N+L D+ KQ+V ++D PP E+ +L+ R+ SR + G+ Sbjct: 261 LIDDIQFIAGKERTQEEFFHTFNALYDAQKQIVISSDCPPREIPTLEERLHSRFEWGLIA 320 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 L D E + +ILK + + K+++++ V + +A + ++ REL+G+ +L+ Sbjct: 321 DLQPPDLETKVAILKRKADLE-----KIDLSDNVALFIAGKIKSNIRELEGSLIRLI--- 372 Query: 383 SFAPILTAEIADELLSHLVNTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 ++A + I EL ++N E ++ + IE IQR+V+ HY + +DL S R + P Sbjct: 373 AYASLKQRPIDIELCKEVLNIEEEERPITIEMIQRVVSDHYGLRVSDLKSKNNSRNIAVP 432 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAMYL K +T S PEIGR FG++ HTTVLH+ K+ ++ T + L+ LIS Sbjct: 433 RQVAMYLCKQLTNHSLPEIGRHFGNKHHTTVLHSCEKISRLYHTQSDFHR---LINNLIS 489 >gi|260588817|ref|ZP_05854730.1| DNA replication initiator protein, ATPase [Blautia hansenii DSM 20583] gi|260540596|gb|EEX21165.1| DNA replication initiator protein, ATPase [Blautia hansenii DSM 20583] Length = 456 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 143/449 (31%), Positives = 255/449 (56%), Gaps = 43/449 (9%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK-AWIKNRYLETITKLFQEEHSR 103 ++++ V + +W + L+ + V N+V + V + +I +YL + E Sbjct: 18 KIEHDVSDVSFNAWLEPLEVYKVEGNVVTIIVTNGSMALDYINKKYLLPLKVSIAETIG- 76 Query: 104 IQGVEILVRSVALP-SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 Q EI S+ LP +++ P +N NI K+ L+ R+ Sbjct: 77 -QDFEI---SLVLPEDIKEEFKEPPTAAPVSLNENIEKAN---------------LNPRY 117 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G++N++A A+ ++AE Y NPLFI+ VGLGKTHL+ +IA+ ++ Sbjct: 118 TFDTFVVGNNNKMAHAASLAVAESPGEAY-----NPLFIYGGVGLGKTHLMHSIAHFVLQ 172 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRD--NCALN-LKDSLRNIDLLLIDDMQFLQGK-LIQH 278 + P+ +V+Y+T+EYF +IR+ N ++ ++ RNID+LLIDD+QF+ GK Q Sbjct: 173 KNPSAKVLYVTSEYFTNELIDSIRNGNNTTMSKFREKYRNIDVLLIDDIQFIIGKESTQE 232 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L + KQ+V ++D+PP ++E L+ R+RSR + G+ V + DYE R +IL+ Sbjct: 233 EFFHTFNALHGAKKQIVISSDKPPKDMEILEDRLRSRFEWGLIVDISSPDYETRMAILRK 292 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----AD 394 + +E I++EV+ ++A+ V ++ REL+G+ N+++ ++A + +EI A+ Sbjct: 293 K-----EELDGYKIDDEVIEYIAKNVKSNIRELEGSLNKIM---AYANLEKSEINLALAE 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++L +++ + + + E I +VA+H+++ +DL N+R +V PRQ+ MYL + MT Sbjct: 345 KVLKDIISPNQKRIITPELIIEVVAEHFDLQPSDLTGNKRNAKIVFPRQIVMYLCRSMTE 404 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + IG+ G RDHTT+++ + K+E L Sbjct: 405 VTLKNIGKVLGGRDHTTIMNGIDKIEAEL 433 >gi|108802857|ref|YP_642794.1| chromosomal replication initiator protein DnaA [Rubrobacter xylanophilus DSM 9941] gi|108764100|gb|ABG02982.1| chromosomal replication initiator protein DnaA [Rubrobacter xylanophilus DSM 9941] Length = 450 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 150/463 (32%), Positives = 250/463 (53%), Gaps = 38/463 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ E ++ V R+ + WF+ + + + + +SVP F K +I++R+ Sbjct: 1 MQSRAEEVWNEVLDRVSEHINAPSLKVWFEGTRPVQLYEDGLEISVPNTFAKEYIESRFR 60 Query: 91 ETITK-----LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 + + L QEE S I V R E +A + + + LS +++P Sbjct: 61 PLLEEALDGVLGQEETSIIVSVGGQGRRAGRE--ETSAETGAESVLS------ARTP--- 109 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 L +++ F +F+ G+ NR A AA ++AE V NPLFI+ V Sbjct: 110 ----------RSLKAKYTFDSFVIGAGNRFAHAAALAVAENPG-----VVYNPLFIYGGV 154 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL+A+ + + P +RV Y+T E F F +++RDN L + R D+LLI Sbjct: 155 GLGKTHLLRAVGHYVEDQDPTMRVRYVTCEQFTNDFINSMRDNAPLEFQKRYRENDVLLI 214 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL+ K+ Q F H N+L + KQ+V A+DR P L++L+ R+ SR + G+ + Sbjct: 215 DDIQFLENKVETQEAFFHTFNALYEENKQIVIASDRHPKYLQTLENRLVSRFEWGLVTDI 274 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHS 383 D E R +IL+ + + +L +++EVL +A V+T+ REL+GA + L + Sbjct: 275 QPPDLETRIAILRKKAMMD-----RLEVDDEVLTFIASKVSTNIRELEGALVRILAYASL 329 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +T +A+E+L ++ + +++ IE IQ V +++ IS+ DL+ R + PRQ Sbjct: 330 YGRQVTVALAEEVLRDILPDSDYREIPIELIQHEVCRYFGISKEDLVGTSRSKAFAYPRQ 389 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 VAMYLS+ +T S P+IG+ FG RDH+TV+HA K+ ++ +D Sbjct: 390 VAMYLSRELTDESLPKIGKAFGGRDHSTVMHATNKIANLINSD 432 >gi|307717718|ref|YP_003873250.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6192] gi|306531443|gb|ADN00977.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6192] Length = 452 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 156/454 (34%), Positives = 246/454 (54%), Gaps = 43/454 (9%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 WF + ++ + + VP++F++ IK RY I F E R ++ +V +L Sbjct: 30 WFFEVDYYDGSEETLRIRVPSSFVRDQIKQRYQRLIEDKFYELLGRKLLLDFVVEKRSLA 89 Query: 118 SVEKTASSPS----ITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 E+ SS S I K P + + + + F F+ G +N Sbjct: 90 Q-ERPVSSSSPQREIPKERPPHPQLRRD--------------------YTFENFVIGENN 128 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 A AA +IA+ Y NP I+ VGLGKTHLLQ+I N+ NL+VVY+T Sbjct: 129 AFAANAALAIAKNPGTAY-----NPCLIYGGVGLGKTHLLQSIGNSVYGEFHNLKVVYVT 183 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAK 292 AE F F ++I++ K RN+D+LLIDD+ F K Q E H N+L D+ K Sbjct: 184 AEEFTNEFIASIQNKETHKFKTKYRNVDVLLIDDIHFFMNKTETQEELFHTFNALYDANK 243 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V DRP SEL+++ R+RSR + G++V L +E R++ILK ++ E ++I Sbjct: 244 QMVFTCDRPVSELKNISHRLRSRFERGLNVDLQPPSFETRYAILKKKI-----EQKTVHI 298 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKK 408 +EV+ +A VTT+ R+L+ A +L+ ++A + +T +IA L + T + Sbjct: 299 PDEVITFIAEHVTTNVRDLEAALTKLI---AYAELVHRDITIDIAKSQLKDMFTTTKQTN 355 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I+ IQ++VA ++ I+++DL + +R RTVV PRQ+AMY+++ +T S EIG FG RD Sbjct: 356 ITIDLIQKVVADYFGITQSDLRNKKRTRTVVFPRQIAMYIARELTEYSTTEIGEYFGGRD 415 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 HTTV++A++K+E + TD TL + L R + E Sbjct: 416 HTTVMYAIQKIESKMRTDPTLDTIIAQLIREVQE 449 >gi|331083519|ref|ZP_08332631.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 6_1_63FAA] gi|330404212|gb|EGG83760.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 6_1_63FAA] Length = 454 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 143/449 (31%), Positives = 255/449 (56%), Gaps = 43/449 (9%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK-AWIKNRYLETITKLFQEEHSR 103 ++++ V + +W + L+ + V N+V + V + +I +YL + E Sbjct: 16 KIEHDVSDVSFNAWLEPLEVYKVEGNVVTIIVTNGSMALDYINKKYLLPLKVSIAETIG- 74 Query: 104 IQGVEILVRSVALP-SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 Q EI S+ LP +++ P +N NI K+ L+ R+ Sbjct: 75 -QDFEI---SLVLPEDIKEEFKEPPAAAPVSLNENIEKAN---------------LNPRY 115 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G++N++A A+ ++AE Y NPLFI+ VGLGKTHL+ +IA+ ++ Sbjct: 116 TFDTFVVGNNNKMAHAASLAVAESPGEAY-----NPLFIYGGVGLGKTHLMHSIAHFVLQ 170 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRD--NCALN-LKDSLRNIDLLLIDDMQFLQGK-LIQH 278 + P+ +V+Y+T+EYF +IR+ N ++ ++ RNID+LLIDD+QF+ GK Q Sbjct: 171 KNPSAKVLYVTSEYFTNELIDSIRNGNNTTMSKFREKYRNIDVLLIDDIQFIIGKESTQE 230 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L + KQ+V ++D+PP ++E L+ R+RSR + G+ V + DYE R +IL+ Sbjct: 231 EFFHTFNALHGAKKQIVISSDKPPKDMEILEDRLRSRFEWGLIVDISSPDYETRMAILRK 290 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----AD 394 + +E I++EV+ ++A+ V ++ REL+G+ N+++ ++A + +EI A+ Sbjct: 291 K-----EELDGYKIDDEVIEYIAKNVKSNIRELEGSLNKIM---AYANLEKSEINLALAE 342 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++L +++ + + + E I +VA+H+++ +DL N+R +V PRQ+ MYL + MT Sbjct: 343 KVLKDIISPNQKRIITPELIIEVVAEHFDLQPSDLTGNKRNAKIVFPRQIVMYLCRSMTE 402 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + IG+ G RDHTT+++ + K+E L Sbjct: 403 VTLKNIGKVLGGRDHTTIMNGIDKIEAEL 431 >gi|289523933|ref|ZP_06440787.1| DNA replication initiator protein, ATPase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502589|gb|EFD23753.1| DNA replication initiator protein, ATPase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 446 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 150/426 (35%), Positives = 232/426 (54%), Gaps = 35/426 (8%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP 133 L VP F+K I++R+L + L + + VE++V + +K A Sbjct: 44 LDVPNVFVKEQIQSRFLSGLKDLVAD-RGIAREVELVVGTEVRDGEQKRAE--------- 93 Query: 134 INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 N K P P L+ + F TF+ G SNR+A A+ ++AE Y Sbjct: 94 ---NALKQP--------PPPNPDGLNPNYYFDTFVVGKSNRLAHAASLAVAESPGVAY-- 140 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPLFI VGLGKTHL+ AI + ++ P RVVY ++E F SAI++N Sbjct: 141 ---NPLFIWGGVGLGKTHLMHAIGHYVLEHLPGARVVYASSEKFTNELISAIQNNKTQEF 197 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 K RN+D+LLIDD+QFL K Q EF H NSL ++ +Q+V ++DRPP E++S++ R+ Sbjct: 198 KAKFRNVDILLIDDIQFLANKESTQEEFFHTFNSLHNAKRQIVLSSDRPPKEIQSIEQRL 257 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 SR + G+ + D E R +IL+ + E +I E+V+ +A+ + ++ REL+ Sbjct: 258 VSRFEWGLVTDIQPPDLETRIAILQKK-----AEFRGYDIPEDVVYFLAQNIPSNIRELE 312 Query: 373 GAFNQLVF--RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 GA N+++ + + PI T E A E L ++ + + ++ IQ VA ++ DL Sbjct: 313 GALNRIIACSQLNMEPI-TVENATEWLKDIIKMQQQGPISVDLIQDAVASYFGFDVEDLK 371 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 S++R + RQVAMYLS+ +T S +IG F +DHTTVLHA RK+E+M++ D+ +K Sbjct: 372 SSKRTADIALARQVAMYLSRELTESSLQQIGIAFNKKDHTTVLHACRKIEEMMKEDLKMK 431 Query: 491 KEVELL 496 K V+ L Sbjct: 432 KIVDNL 437 >gi|310657317|ref|YP_003935038.1| chromosomal replication initiator protein DnaA [Clostridium sticklandii DSM 519] gi|308824095|emb|CBH20133.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Clostridium sticklandii] Length = 440 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 118/338 (34%), Positives = 201/338 (59%), Gaps = 12/338 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A A ++AE + Y NPLFI+ VGLGKTHL+ AI Sbjct: 104 LNPKYTFDTFVIGNSNRFAHAACVAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAIG 158 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + N +++YL++E F ++I+D+ ++ RN+D++L+DD+QF+ GK Sbjct: 159 HYIVSNNKNSKILYLSSETFTNELINSIKDDKNEAFRNKYRNVDVILVDDIQFIAGKERT 218 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L D+ KQ++ ++DR P E+ +L+ R+RSR + G+ + D+E R +IL Sbjct: 219 QEEFFHTFNALHDANKQIIISSDRTPKEIPTLEDRLRSRFEMGLIADIQPPDFETRIAIL 278 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADE 395 + + + ++ P EV++H+A+ + ++ REL+GA +++ + +T E+A E Sbjct: 279 RKKAQVENRDIPN-----EVMVHIAKNIKSNIRELEGALVRVIAYSDLTKEEITYELACE 333 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + + ++ I+ VA+ +++ D S +R R + PRQ+AMYL + +T Sbjct: 334 ALKDIFQSSANNELNSSAIKEKVAQIFSVKMEDFQSKKRTRAIAYPRQIAMYLCRELTDM 393 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 S P+IG FG RDHTTV+HA KV +E D +K ++ Sbjct: 394 SLPKIGEEFGGRDHTTVIHACDKVASDIEKDEDIKNKI 431 >gi|225570325|ref|ZP_03779350.1| hypothetical protein CLOHYLEM_06422 [Clostridium hylemonae DSM 15053] gi|225160857|gb|EEG73476.1| hypothetical protein CLOHYLEM_06422 [Clostridium hylemonae DSM 15053] Length = 462 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 144/468 (30%), Positives = 255/468 (54%), Gaps = 34/468 (7%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 R+++++ +++W Q LK + V+ + V + V N +I+ +YL + E I Sbjct: 16 RIEHELSNVSFSTWIQPLKVYDVIDSTVFILVNMNASVEYIEKKYLLPLKVCIAE----I 71 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 G E + V + I ++ + S+ K+T S + L+ ++ F Sbjct: 72 TGTEYEI-------VFLSEDDDRIDEIQNMAIEASQK-----KKTKSAAEKAGLNPKYTF 119 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+ G +N A A+ ++AE Y NPLF++ VGLGKTHL+ +IA+ +++ Sbjct: 120 DTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSIAHFILEKS 174 Query: 225 PNLRVVYLTAEYFMWRFASAIR-------DNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 P +V+Y+T+E F A++ ++ +D RN D+LLIDD+QF+ GK Sbjct: 175 PKKKVLYVTSETFTNELIDALKNGKTAGNESAMSKFRDKYRNNDVLLIDDIQFIIGKEST 234 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + +YE R +IL Sbjct: 235 QEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISAPNYETRMAIL 294 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF---APILTAEIA 393 + ++ + + E K NI ++V+ ++A + T+ REL+G+ N+L+ + A + +A Sbjct: 295 QKKIELDKLE--KYNIPQDVIEYIATNIKTNIRELEGSLNKLIALYKLNNNATQIDITLA 352 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L ++++ +++ E I +V++H+ +S DL SN+R + PRQ+AMYL + MT Sbjct: 353 SEALKDIISSKNNREVTPELILDIVSEHFGVSIADLKSNKRNADISNPRQIAMYLIRSMT 412 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG G +DH+TV H V K+ K + TD TL V ++K+ I+ Sbjct: 413 DTPLKSIGIFLGGKDHSTVKHGVDKITKEVTTDETLSNTVSIIKKKIN 460 >gi|167470924|ref|ZP_02335628.1| chromosomal replication initiator protein DnaA [Yersinia pestis FV-1] Length = 355 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 131/350 (37%), Positives = 208/350 (59%), Gaps = 13/350 (3%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 16 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 70 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 71 HAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 130 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 131 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 190 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 191 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 245 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 246 FVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 304 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 305 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 354 >gi|90408442|ref|ZP_01216602.1| chromosomal replication initiation protein [Psychromonas sp. CNPT3] gi|90310426|gb|EAS38551.1| chromosomal replication initiation protein [Psychromonas sp. CNPT3] Length = 386 Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 134/349 (38%), Positives = 205/349 (58%), Gaps = 14/349 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L ++ F F+EG SN A+ Q IAE Y NPLF++A GLGKTHLL A Sbjct: 48 SNLIKKYTFDNFVEGKSNNFAIATTQQIAENPGDVY-----NPLFLYAHPGLGKTHLLHA 102 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + NA + P +VVY+ +E F+ ++IR+N K+ ++D LLIDD+ F GK Sbjct: 103 VGNAIVAANPESKVVYIRSERFVQDMINSIRNNTIEQFKEYYASLDALLIDDIHFFAGKD 162 Query: 276 IQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 E NS+LD+ +QV+ +DR P E+E +D R+R+R G+S+P+ + E R + Sbjct: 163 RSQEVLFQTFNSMLDAHQQVILTSDRFPKEIEGIDERLRTRFGWGLSIPIDPPELETRVA 222 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVT-TSGRELDGAFNQLVFRHSF-APILTAEI 392 IL I++ E+ L + ++V +A+ +T T R L+GA + + F +T + Sbjct: 223 IL-----ITKAEERGLVLPDDVAFFIAKRLTITDVRVLEGAIANISAKAQFTGQDITISL 277 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L ++ T++ IE+IQ++VA+HY I +D+ S RR RTV RPRQ+AM L+K + Sbjct: 278 VQDALRDMLAV-HTRQTTIENIQKIVAEHYRIKTSDMSSKRRTRTVARPRQIAMALAKEL 336 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RKV ++ + ++++ ++L R +S Sbjct: 337 TQHSLPEIGEAFGGRDHTTVLHACRKVAELRRENNDIQEDYKILIRTLS 385 >gi|319746185|gb|EFV98455.1| DNA-directed DNA replication initiator protein [Streptococcus agalactiae ATCC 13813] Length = 469 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 206/351 (58%), Gaps = 16/351 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L ++ F+ F++G NR A++A SIA DS G T NPLFI GLGKTHLL A Sbjct: 128 SNLKEKYTFANFVQGDENRWAVSA--SIAVADSPGTT---YNPLFIWGGPGLGKTHLLNA 182 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ PN RV+Y+TAE F+ F S IR + LK+ RN+DLLLIDD+Q L K Sbjct: 183 IGNQVLRDNPNARVLYITAENFINEFVSHIRLDSMEELKEKFRNLDLLLIDDIQSLAKKT 242 Query: 276 I---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 + Q EF + N+L + KQ+V +DR P++L L+ R+ +R G+ V + D+E R Sbjct: 243 LGGTQEEFFNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVNITPPDFETR 302 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTA 390 +IL N++ +E P + ++ + ++A ++ REL+GA + F A +T Sbjct: 303 VAILTNKI----QEYP-YDFPQDTIEYLAGEFDSNVRELEGALKNISLVADFKHAKTITV 357 Query: 391 EIADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + N G + IE+IQ V K Y ++ ++ + +R + +V RQVAMYL+ Sbjct: 358 DIAAEAIRARKNDGPIVTVIPIEEIQIQVGKFYGVTVKEIKATKRTQDIVLARQVAMYLA 417 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + MT S P+IG+ FG RDH+TVLHA K++ M+ D L+ E+E +K I Sbjct: 418 REMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMVAQDDNLRIEIETIKNKI 468 >gi|254495524|ref|ZP_05108448.1| chromosomal replication initiator protein DnaA [Polaribacter sp. MED152] gi|85819880|gb|EAQ41037.1| chromosomal replication initiator protein DnaA [Polaribacter sp. MED152] Length = 475 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 151/486 (31%), Positives = 263/486 (54%), Gaps = 30/486 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ES++T S +K+ + P Y +WF+ +K + + + VP+ F W++ Y+ Sbjct: 1 MSYTAESVWTDCLSFIKDNIKPQAYKTWFEPIKPVKLSGEALTIQVPSKFFYEWLEEHYI 60 Query: 91 E----TITKLFQEEHSRIQGVEI-------LVRSVALPSVEKTASSPSITKLSPINTNIS 139 + + + + I V++ + V +PS + P + P+ +N Sbjct: 61 KLLRVALVRQLGNDAKLIYDVKMENNYSSNRPQIVKIPSSNRDPLKPQRVTV-PLESNKR 119 Query: 140 --KSPIIL-GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 ++P I+ G Q + S L+ + F+ F+EG SNR+A +A ++A + G T+ Sbjct: 120 ELRNPFIIPGLQKVK--IESQLNPNYSFANFVEGDSNRLARSAGMAVA--NKPGGTS--F 173 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL I+ VGLGKTHL AI + P+ V+Y+++E F +F +++ N + Sbjct: 174 NPLLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHF 233 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR Sbjct: 234 YQMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSR 293 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+S L DYE R SIL+N+L E P EE++ ++A+ + ++ REL+G Sbjct: 294 FKWGLSAELQAPDYETRISILQNKLFRDGVEMP-----EEIIEYIAKNIKSNVRELEGVI 348 Query: 376 NQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 ++ + SF + E+A +++ V + K++ I+ IQ+ V+K++++ L S R Sbjct: 349 ISMIAQASFNRREFSIELAKQIVDKFVKNTK-KEVSIDYIQKEVSKYFDMDVATLQSKTR 407 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV- 493 R +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + ETD KK V Sbjct: 408 KRHIVQARQLAMFFAKRLTKTSLASIGNQIGQRDHATVLHACKTVDNLTETDKQFKKYVD 467 Query: 494 ELLKRL 499 +L K+L Sbjct: 468 DLTKKL 473 >gi|22536186|ref|NP_687037.1| chromosomal replication initiation protein [Streptococcus agalactiae 2603V/R] gi|25010076|ref|NP_734471.1| chromosomal replication initiation protein [Streptococcus agalactiae NEM316] gi|76787564|ref|YP_328728.1| chromosomal replication initiation protein [Streptococcus agalactiae A909] gi|76797986|ref|ZP_00780245.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 18RS21] gi|77405627|ref|ZP_00782716.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae H36B] gi|77407687|ref|ZP_00784442.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae COH1] gi|77411769|ref|ZP_00788105.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae CJB111] gi|77413657|ref|ZP_00789842.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 515] gi|61212814|sp|Q8E2I7|DNAA_STRA5 RecName: Full=Chromosomal replication initiator protein DnaA gi|61212815|sp|Q8E7Z4|DNAA_STRA3 RecName: Full=Chromosomal replication initiator protein DnaA gi|123744534|sp|Q3K425|DNAA_STRA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|22533003|gb|AAM98909.1|AE014191_1 chromosomal replication initiator protein DnaA [Streptococcus agalactiae 2603V/R] gi|23094427|emb|CAD45646.1| replication initiation protein DnaA [Streptococcus agalactiae NEM316] gi|76562621|gb|ABA45205.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae A909] gi|76586666|gb|EAO63165.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 18RS21] gi|77160312|gb|EAO71438.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 515] gi|77162160|gb|EAO73135.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae CJB111] gi|77173686|gb|EAO76800.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae COH1] gi|77175771|gb|EAO78551.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae H36B] Length = 453 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 138/351 (39%), Positives = 206/351 (58%), Gaps = 16/351 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L ++ F+ F++G NR A++A SIA DS G T NPLFI GLGKTHLL A Sbjct: 112 SNLKEKYTFANFVQGDENRWAVSA--SIAVADSPGTT---YNPLFIWGGPGLGKTHLLNA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ PN RV+Y+TAE F+ F S IR + LK+ RN+DLLLIDD+Q L K Sbjct: 167 IGNQVLRDNPNARVLYITAENFINEFVSHIRLDSMEELKEKFRNLDLLLIDDIQSLAKKT 226 Query: 276 I---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 + Q EF + N+L + KQ+V +DR P++L L+ R+ +R G+ V + D+E R Sbjct: 227 LGGTQEEFFNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVNITPPDFETR 286 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTA 390 +IL N++ +E P + ++ + ++A ++ REL+GA + F A +T Sbjct: 287 VAILTNKI----QEYP-YDFPQDTIEYLAGEFDSNVRELEGALKNISLVADFKHAKTITV 341 Query: 391 EIADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + N G + IE+IQ V K Y ++ ++ + +R + +V RQVAMYL+ Sbjct: 342 DIAAEAIRARKNDGPIVTVIPIEEIQIQVGKFYGVTVKEIKATKRTQDIVLARQVAMYLA 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + MT S P+IG+ FG RDH+TVLHA K++ M+ D L+ E+E +K I Sbjct: 402 REMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMVAQDDNLRIEIETIKNKI 452 >gi|320332619|ref|YP_004169330.1| Chromosomal replication initiator protein dnaA [Deinococcus maricopensis DSM 21211] gi|319753908|gb|ADV65665.1| Chromosomal replication initiator protein dnaA [Deinococcus maricopensis DSM 21211] Length = 455 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 153/462 (33%), Positives = 253/462 (54%), Gaps = 28/462 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF-----QEE 100 ++N + Y +WF +K V + L V +F + W + YLE + Q Sbjct: 5 VRNNISEVEYHTWFAPVKPLGVQQGSLVLGVRNSFAQEWFRKHYLELLEDALRSLGAQSP 64 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 Q + + ++ LP E S P T+ P + P+ G+ S L+ Sbjct: 65 QVSFQVLPAVQDAMMLPVNEPEVSPPPRTRALP---GPAPLPVGSGENRKS------LNP 115 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ A+ + Sbjct: 116 KYTFENFVVGPNNNLAHAAALAVAESPGRAY-----NPLFIYGDVGLGKTHLMHAVGHYI 170 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 +R P+ R+ YL+ E F +AIRD+ ++ R++DLLL+DD+QFL GK Q E Sbjct: 171 AERYPDKRIEYLSTESFTNELINAIRDDKMTQFRNKYRSVDLLLVDDIQFLAGKERTQEE 230 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ + ++E R +ILK Sbjct: 231 FFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRVAILK-- 288 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLS 398 E ++I ++VL VAR VT++ REL+GA ++V S + + +A + LS Sbjct: 289 ---MNAEHRHIDIPQDVLEQVARQVTSNIRELEGALMRVVAFSSLNNVPFSRAVAAKALS 345 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + + E + ++D+ R+V + + +S + L R R VV PRQVAMYL + +T S P Sbjct: 346 DVFASQEV-NVEMKDVLRVVGERFGVSTDILKGAGRARDVVVPRQVAMYLIRELTSHSLP 404 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 EIG+ FG RDH+TVLH+++KV + + D L ++ L++++ Sbjct: 405 EIGQFFG-RDHSTVLHSIQKVTEAVGKDADLTAHIDALRQIL 445 >gi|313885387|ref|ZP_07819137.1| chromosomal replication initiator protein DnaA [Eremococcus coleocola ACS-139-V-Col8] gi|312619117|gb|EFR30556.1| chromosomal replication initiator protein DnaA [Eremococcus coleocola ACS-139-V-Col8] Length = 449 Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 127/350 (36%), Positives = 211/350 (60%), Gaps = 18/350 (5%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F F+ G N++A AA +A V+S G T NP I+ VGLGKTHL+QA Sbjct: 111 SHLNPNYTFENFVIGEDNKMASVAA--LAVVESPGKT---YNPFLIYGGVGLGKTHLMQA 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N R P ++ Y T+E F+ F ++I++ + + R ID+LLIDD+QFL K Sbjct: 166 IGNEIKHRNPGAKIKYATSESFVNDFITSIQNGSQDHFRQMYREIDILLIDDIQFLSNKD 225 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V +DR P+ + +L+ R+ SR + G+S + D E R + Sbjct: 226 KTQEEFFHTFNALYNNGKQIVLTSDRLPNNITNLEERLISRFKWGLSTDITPPDLETRIA 285 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 IL+ + + L+IN E L ++A + ++ REL+GA +++ ++A I +T Sbjct: 286 ILRKKASTDN-----LDINSETLTYIASHIDSNIRELEGALVRVI---AYAAIKGLDITT 337 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L ++V+ + + ++I VA++YN++ D++ +R + +V PRQ+AMYLS+ Sbjct: 338 DLAAEALKNIVDDNQQNDITPKEIIDQVARYYNVTVTDIIGKKRKKEIVMPRQIAMYLSR 397 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T SFP+IG FG ++HTTV+HA K+ + +I LK+++ LK+L+ Sbjct: 398 QLTELSFPKIGEEFGHKNHTTVIHAFEKINDEISYNIELKEDINKLKKLL 447 >gi|225377585|ref|ZP_03754806.1| hypothetical protein ROSEINA2194_03235 [Roseburia inulinivorans DSM 16841] gi|225210561|gb|EEG92915.1| hypothetical protein ROSEINA2194_03235 [Roseburia inulinivorans DSM 16841] Length = 451 Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 141/455 (30%), Positives = 254/455 (55%), Gaps = 39/455 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLK-AWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 + +W + L+ V N +++ VP+ + ++I +Y + E I G E ++ Sbjct: 26 FDTWIKPLEVFGVEGNTLYILVPSEQMTLSYISKKYYLPLKVAIAE----IIGTEYEIQF 81 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG--SPLDSRFVFSTFIEGS 171 + LP E+T + + P N GK+T P S L+ + F TF+ GS Sbjct: 82 I-LP--EQTRN------IRPSNNK--------GKKTPEPEASKRSNLNPNYTFDTFVVGS 124 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 +NR A +A+ ++AE Y NPL+I+ GLGKTHL+ +I + ++R P +V+Y Sbjct: 125 NNRFAQSASLAVAESPGEAY-----NPLYIYGGPGLGKTHLMHSIGHFILERNPEAKVLY 179 Query: 232 LTAEYFMWRFASAIRDN--CALN-LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 +T+E F +IR A+N ++ R ID+L+IDD+QF+ GK Q EF H N+L Sbjct: 180 VTSEEFTNEVIESIRSGNASAMNKFREKYRTIDVLMIDDVQFIIGKESTQEEFFHTFNAL 239 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + KQ++ +D+PP ++E+L+ RIRSR + G+ +G DYE R +IL+ ++ E Sbjct: 240 HSAGKQIILTSDKPPKDMETLEERIRSRFEWGLMADIGAPDYETRMAILRRKV-----ES 294 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGET 406 +++++++L ++A + ++ REL+GA N+L+ + +T EIA + L +++ + Sbjct: 295 DDMSLSDDILNYIANNIKSNIRELEGALNKLLAYSNLEKTEITMEIAKKELQNIITPDKP 354 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 +++ + I +V++H+ IS + ++S R + RPRQ+AMYL K MT IG G Sbjct: 355 REITPQLIIEVVSEHFQISLDQMISKNRSNEIARPRQIAMYLCKTMTDIPLDSIGSLLGG 414 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDH+T++H ++K+ +++ + +E +K+ I+ Sbjct: 415 RDHSTIIHGIKKIADEYDSNEQTRNLIETIKKKIN 449 >gi|24378533|ref|NP_720488.1| chromosomal replication initiation protein [Streptococcus mutans UA159] gi|290579527|ref|YP_003483919.1| chromosomal replication initiator protein [Streptococcus mutans NN2025] gi|38257598|sp|Q8DWN9|DNAA_STRMU RecName: Full=Chromosomal replication initiator protein DnaA gi|24376381|gb|AAN57794.1|AE014853_1 chromosomal replication initiator protein, DnaA [Streptococcus mutans UA159] gi|254996426|dbj|BAH87027.1| chromosomal replication initiator protein [Streptococcus mutans NN2025] Length = 452 Score = 233 bits (594), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 145/426 (34%), Positives = 232/426 (54%), Gaps = 35/426 (8%) Query: 90 LETITKLFQEEHSR----IQGVEILVRSVALPSV----EKTASSPSITKLSPINTNISKS 141 L+ + KLF E++ + G E+ +++ V + T++SP I++ Sbjct: 46 LDDMKKLFWEKNLQPVVLTAGFEVFNTEISIEYVFEETQSTSNSPQISQ---------NK 96 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 L +T+ P + L+ ++ F F+ G NR A TA+ S+A++ Y NPLFI Sbjct: 97 TAELATETL-PFVQNDLNPKYSFDNFVIGDENRWAFTASVSVADLPGTTY-----NPLFI 150 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL AI N+ + P R+ Y++AE F+ F IR LK RN+D Sbjct: 151 YGGPGLGKTHLLNAIGNSVLASNPKARIKYISAENFINEFVVHIRLQNMDELKKKFRNLD 210 Query: 262 LLLIDDMQFLQGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 LLLIDD+Q L K + Q EF + N+L D+ KQ+V +DR P +L L+ R+ +R + Sbjct: 211 LLLIDDIQSLAKKSLAATQEEFFNTFNALHDNNKQIVLTSDRTPDDLNDLEQRLVTRFKW 270 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + D+E R +IL N++ ++ + E + ++A ++ R+L+GA + Sbjct: 271 GLTVNITPPDFETRVAILNNKI-----QEYNYSFLSETIEYLAGQFDSNVRDLEGALKDI 325 Query: 379 VFRHSFAP--ILTAEIADELLSHLVNTGETKKM--RIEDIQRMVAKHYNISRNDLLSNRR 434 +F ++T E+A E + K + IEDIQ+ V K Y ++ ++ S +R Sbjct: 326 SLVANFKKLDVITVEVAAEAIRARKQDSSPKMIVIPIEDIQKQVGKFYGVTVKEIKSTKR 385 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + +V RQV MYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +LK E+E Sbjct: 386 TQNIVLARQVGMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLKIEME 445 Query: 495 LLKRLI 500 +K I Sbjct: 446 TIKNKI 451 >gi|288904224|ref|YP_003429445.1| Chromosomal replication initiator protein DnaA [Streptococcus gallolyticus UCN34] gi|306832484|ref|ZP_07465636.1| DNA-directed DNA replication initiator protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977201|ref|YP_004286917.1| Chromosomal replication initiator protein dnaA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730949|emb|CBI12493.1| Chromosomal replication initiator protein DnaA [Streptococcus gallolyticus UCN34] gi|304425384|gb|EFM28504.1| DNA-directed DNA replication initiator protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177129|emb|CBZ47173.1| Chromosomal replication initiator protein dnaA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 451 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 128/355 (36%), Positives = 207/355 (58%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P+ S L++++ F F++G NR A +A+ ++A+ Y NPLFI GLGKTH Sbjct: 106 PLVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTY-----NPLFIWGGPGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI NA ++ PN RV Y+TAE F+ F IR + LK+ RN+D+LLIDD+Q L Sbjct: 161 LLNAIGNAVLQNNPNARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLIDDIQSL 220 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L D+ KQ+V +DR P L++L+ R+ +R + G+++ + D Sbjct: 221 AKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTINITPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N+ ++ ++ + ++A ++ R+L+GA + S I Sbjct: 281 FETRVAILTNK-----TQEYNYIFPQDTIEYLAGQFDSNVRDLEGALKDISLVASIKKIE 335 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T ++A E + G + + I++IQ V K Y ++ ++ + +R + +V RQVA Sbjct: 336 TITVDVAAEAIRARKQDGPKMTVIPIDEIQSQVGKFYGVTVKEIKATKRTQDIVLARQVA 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E+E +K I Sbjct: 396 MYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIETIKNKI 450 >gi|51891139|ref|YP_073830.1| chromosomal replication initiation protein [Symbiobacterium thermophilum IAM 14863] gi|61212552|sp|Q67TK7|DNAA_SYMTH RecName: Full=Chromosomal replication initiator protein DnaA gi|51854828|dbj|BAD38986.1| chromosomal replication initiation protein [Symbiobacterium thermophilum IAM 14863] Length = 458 Score = 233 bits (593), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 147/450 (32%), Positives = 251/450 (55%), Gaps = 22/450 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W + + +V+ + + + V F K +++RY + + ++ R + ++ VA Sbjct: 27 NWVRSTRPVAVVEDTIIVGVQGEFAKHRMESRYAPLLRQALRDLTKR----NMQLKFVAN 82 Query: 117 PSV-EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 P+V E A+ P +P ++ + + + G ++ ++ F TF+ G+SNR Sbjct: 83 PNVIEDPAAEPVD---APNVADLPAGTSAPAAEQNARLLGY-INPKYTFETFVVGNSNRF 138 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA ++AE + Y NPLFI+ VGLGKTHL+ AI + ++ P +V Y++ E Sbjct: 139 AHAAALAVAETPARTY-----NPLFIYGGVGLGKTHLMHAIGHYVLQHNPTAKVAYVSTE 193 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F F AI+ ++ R +D+LLIDD+QFL GK Q EF H N++ ++ KQ+ Sbjct: 194 TFTNEFIMAIQKGSTTAFQNRYRKVDVLLIDDIQFLAGKEATQEEFYHTFNAIREANKQI 253 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + +Q E + + + Sbjct: 254 VISSDRPPKEIPTLEDRLRSRFEWGLICDIQPPDLETRTAILRKK---AQSEG--IQVPD 308 Query: 355 EVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIED 413 EV ++A + T+ REL+GA ++V + + LT ++A + L ++ K++ I Sbjct: 309 EVTNYIATNIETNIRELEGALTRVVAYANMLKCPLTYDLAVQALKDILPPVRPKQITIAT 368 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I+++VA+HYNI D R R V PRQ+AMYL++ +T S P+IG FG RDHTTV+ Sbjct: 369 IKQVVAEHYNIRMQDFEVRNRSRAVAYPRQIAMYLARELTDSSLPKIGEEFGGRDHTTVI 428 Query: 474 HAVRKVEKMLETDITLKKEVE-LLKRLISE 502 HA K+ K +++D +E L+ R+ +E Sbjct: 429 HACEKIAKDIQSDPAFAHTIEQLIARIRAE 458 >gi|118578450|ref|YP_899700.1| chromosomal replication initiation protein [Pelobacter propionicus DSM 2379] gi|166214687|sp|A1AJX2|DNAA_PELPD RecName: Full=Chromosomal replication initiator protein DnaA gi|118501160|gb|ABK97642.1| chromosomal replication initiator protein DnaA [Pelobacter propionicus DSM 2379] Length = 450 Score = 233 bits (593), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 146/455 (32%), Positives = 244/455 (53%), Gaps = 36/455 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W Q + + V L+VPT F K WI Y + + + +E++V+ Sbjct: 21 FTTWIQPISYSHADDTTVFLTVPTLFFKEWIDEHYRQVLVGALSVTAGKKYFIELVVQEE 80 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI-SPVFGSP------LDSRFVFSTF 167 ++ A P L II G Q I PV P L+ ++ F F Sbjct: 81 -----DQNAEVPQAEDL-----------IIKGHQEIEQPVTSQPETSSSSLNPKYTFELF 124 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 + G+ N+ A AA ++A + Y NPLFI+ VGLGK+HLL AI + PNL Sbjct: 125 VSGTGNQFAHAAAMAVANNPADTY-----NPLFIYGGVGLGKSHLLNAIGHTIRSSSPNL 179 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNS 286 V Y +AE FM+ +A+R + RN+D+LL+DD+QF+ GK+ Q EF H N+ Sbjct: 180 SVCYCSAEKFMYEMVNALRQKRMDQFRSRFRNLDVLLVDDIQFISGKVGTQEEFFHTFNA 239 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 L D KQ+V +D+ P E+ L+ R+RSR + G+ + D E + +ILK + I+ Sbjct: 240 LYDMQKQIVITSDKFPREISDLEERLRSRFEWGLIADIQPPDLETKIAILKKKSEIT--- 296 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGE 405 ++ + E+V+ +A + T + REL+G +L S I +T ++A E L ++ Sbjct: 297 --RIQLPEDVIYFLASSDTRNIRELEGMLIRLGAYSSLQGIPITLDMARENLKEIIGD-R 353 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 K + +E IQ++VA+ + + DL S++R++ V+ RQ+A++L + MT S+P+IG +FG Sbjct: 354 RKDITVELIQKVVAEQFGLKMADLKSSKRLKNFVQARQIAIWLCRDMTSFSYPDIGAKFG 413 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +DH+TV++A +K++ L+ D L + +E +K ++ Sbjct: 414 GKDHSTVIYAAKKIDLALKDDPKLSRIIEDIKLIL 448 >gi|81299909|ref|YP_400117.1| chromosomal replication initiation protein [Synechococcus elongatus PCC 7942] gi|81168790|gb|ABB57130.1| chromosomal replication initiator protein DnaA [Synechococcus elongatus PCC 7942] Length = 482 Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 149/473 (31%), Positives = 259/473 (54%), Gaps = 30/473 (6%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E + E ++ + RL++Q+ + +W + + ++ LS P F + W++ Y Sbjct: 20 AVEQSLEHLWEQILERLQHQLSRPTFETWIKTATAEAFDGKVLRLSTPNPFARNWLQKYY 79 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS---PSITKLSPINTNISKSPIILG 146 L TI + E G+E+ + ++ S E + + P+I+ P + K P Sbjct: 80 LRTIADVAAEILG--HGIELQIGVLSDTSAEPESGAELWPAIS--PPPAVEVVKPPTTTA 135 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + P+ S L+ ++VFS F+ G++NR+A A+ +IAE Y NPLF+ VG Sbjct: 136 GR--PPLRSSDLNPKYVFSRFVVGANNRMAHAASLAIAEYPGREY-----NPLFLCGGVG 188 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QAI + ++ P+ ++ Y++ E F +AIR + + ++ R D++++D Sbjct: 189 LGKTHLMQAIGHYRLEIDPDAKIFYVSTEQFTNDLIAAIRRDSMQSFREHYRAADVIMVD 248 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF++GK Q EF + NSL ++ KQ+V A+DRPPS++ L R+ SR G+ + Sbjct: 249 DIQFIEGKEYTQEEFFYTFNSLHEAGKQIVLASDRPPSQIPRLQERLISRFSMGLIADIQ 308 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL+ + E + + +V+ ++A T++ REL+GA + V S + Sbjct: 309 PPDFETRVAILQKK-----SEFENMPLPRDVIEYIAARYTSNIRELEGALTRAVAYASIS 363 Query: 386 PI-LT-AEIADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + LT A IA L T T+KM + E I + VA+ +++S DL N R R V Sbjct: 364 GLALTLANIAPVL------TPPTEKMELSPEMILQTVAETFDVSIEDLRGNSRRREVSLA 417 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RQV MYL + T S P+IG +FG +DHTTV+++ K+ ++ ++D + K+++ Sbjct: 418 RQVGMYLMRQHTDLSLPKIGEQFGGKDHTTVMYSCEKIGQLRQSDPQMGKQLQ 470 >gi|27904525|ref|NP_777651.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839271|sp|P59567|DNAA_BUCBP RecName: Full=Chromosomal replication initiator protein DnaA gi|27903922|gb|AAO26756.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 457 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 258/469 (55%), Gaps = 20/469 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 SI+ L+N++ P ++ W + LK NI+ L P F WIK+ Y+E + KL Sbjct: 4 SIWEKCLKYLQNKLSPIEFSMWIRPLK-AEFKKNILILYAPNEFSFNWIKDNYIENLKKL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT--ISPVF 154 + I L+ + P + + +T + NI S + T + ++ Sbjct: 63 LKN-FCNINTTPTLMLKICKPKIIQKKFFNELT----LKKNILNSKLTYNVNTKLSNIIY 117 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S +++ + F F +G SN++A IA Y NPLF++ GLGKTHLL Sbjct: 118 SSEINTNYTFQNFTKGQSNQLAFKTIYKIAHNPGKNY----FNPLFLYGKSGLGKTHLLH 173 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QG 273 A+AN +K + ++++Y+ +E F+ +++++N K R+++ LLIDD+QF Sbjct: 174 AVANTILKYKNTIKIIYINSENFIQNMITSLKNNTIEEFKKYYRSVNTLLIDDIQFFAYK 233 Query: 274 KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 K Q E H +N+LL+ +Q++ +D+ P ++ ++ R++SR + G+++ + D R Sbjct: 234 KHSQEELFHTINALLNRNQQIIITSDQFPQKIHGIETRLKSRFECGLTIRIDPPDLNTRT 293 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEI 392 IL I + +N++ +V +A+ + ++ REL+GA N+++ S I+T Sbjct: 294 KIL-----IKKSHIYDINLSYKVAFFIAKNLKSNIRELEGALNKILANSDSKKKIITINF 348 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L + + K + I++IQ++V+ +Y+I+ +LLS R++++V+PRQ+AM +SK + Sbjct: 349 AYKTLQELFSLPK-KSITIKNIQKVVSNYYHITIINLLSQCRLKSIVKPRQIAMAISKKL 407 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S EIGR F R+H TVL+A +K++K+ E + +KK+ L +++S Sbjct: 408 TNKSLSEIGREFNGRNHATVLYACKKIKKLQEKNNNIKKDFLTLLKILS 456 >gi|116619146|ref|YP_821302.1| chromosomal replication initiator protein DnaA [Candidatus Solibacter usitatus Ellin6076] gi|116222308|gb|ABJ81017.1| chromosomal replication initiator protein DnaA [Candidatus Solibacter usitatus Ellin6076] Length = 437 Score = 232 bits (592), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 145/448 (32%), Positives = 238/448 (53%), Gaps = 33/448 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+++V D Y +W + F + +++SVP +AW++ Y T+L Q IQ Sbjct: 11 LQSKVSADGYDNWLKSTAFVGQNGDTLYVSVPDRETRAWLETEY----TQLIQ---GGIQ 63 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 + + VR V+ + + ++P+ T NT + +L + +F F+ Sbjct: 64 ALGLPVRHVSFEAEQSRPAAPAATIAVNANTEPDAAATVL-------------NPKFTFN 110 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+ N+ A AA+S+A S Y NPLF++ VG+GKTHL+ AI I + Sbjct: 111 SFVVGACNQFAHAAAKSVATNPSRSY-----NPLFLYGGVGMGKTHLMHAIGRQLIDQFG 165 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 ++R++Y ++E FM S IR R D+LLIDD+Q L K Q EF H Sbjct: 166 SMRIIYTSSERFMNEMISCIRTERMQQFHQRYREADVLLIDDIQLLGNKERTQEEFFHTF 225 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N L D KQ+V ++D PP ++ L R+RSR + G+ + D E + +IL + I Sbjct: 226 NELHDHQKQIVISSDSPPKDIPGLLERLRSRFEWGLMADIQPPDLETKMAILDKKAEIEG 285 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNT 403 E P ++V +A ++ REL+GA +L+ S + ++A ++L HLV+ Sbjct: 286 VELP-----DDVRTFMASKTKSNVRELEGALVKLIAYSSLTGTPIHLQMAQQVLKHLVHV 340 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + +++ ++ IQ+ VA+ ++I ++ L + VV PRQVAMYL K +T S PEIGR Sbjct: 341 -QDRRVTMDSIQKAVAEKFSIKQSQLKEKSNTKKVVYPRQVAMYLVKELTNASLPEIGRA 399 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKK 491 FG + HTTV+H++ K+EK ++D L + Sbjct: 400 FGGKHHTTVIHSINKIEKDRQSDPELNR 427 >gi|256848506|ref|ZP_05553948.1| chromosomal replication initiator protein DnaA [Lactobacillus coleohominis 101-4-CHN] gi|256714773|gb|EEU29752.1| chromosomal replication initiator protein DnaA [Lactobacillus coleohominis 101-4-CHN] Length = 439 Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 153/471 (32%), Positives = 251/471 (53%), Gaps = 46/471 (9%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK---NRYLE 91 +S++ V + K + P Y + K +S+ ++ + + +PT++ W K N L+ Sbjct: 4 LDSLWETVQNEFKQSITPPTYENVVAPAKAYSLQNHQLTVVLPTDYHLDWWKKSLNIQLK 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I L ++ I+ + +L + + ++K +P Sbjct: 64 HI--LHEKTGEEIEPIYVLTKDL----MKKADPAPD-----------------------Q 94 Query: 152 PVFG--SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + +PL+ + F F+EG +N+ A +A + +E Y NPL I+ VGLGK Sbjct: 95 PTYKTQTPLNPEYTFDNFVEGRTNQFAYASAFAASEQPGGLY-----NPLLIYGDVGLGK 149 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAIAN + P+ ++ Y+T+E FM + ++I+ + R++D LL+DD+Q Sbjct: 150 THLMQAIANNMLVHNPDAKIKYVTSENFMNDYINSIKTGTQEQFRQEYRDLDALLVDDVQ 209 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF + NSL D+ KQ+V AD+ P E+ +L R+ SR G++V + D Sbjct: 210 FFSEKNGTQLEFFNTFNSLHDNNKQIVLTADQNPKEIPNLTDRLVSRFVWGLTVEITAPD 269 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPI 387 E R +IL NR A +E+ I EV +A + T+ REL+GA ++ VF Sbjct: 270 LETRIAIL-NRKA---EEENLQGIPNEVFNFIASKINTNVRELEGALMRVRVFADLHKTS 325 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A E L + N + I+ IQ+ VA H+NI+++D+ +RV+ +V PRQ+AMY Sbjct: 326 INEAVAREALQGIGNDAPA-TLSIDLIQKKVAAHFNINQSDITGKKRVKNIVIPRQIAMY 384 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 LS+ +T S P IG+ FG +DHTTVLHA+ K+EK + +D L+KE+ LK+ Sbjct: 385 LSRELTDNSLPRIGKEFGGKDHTTVLHAIDKIEKQMTSDSNLQKEINSLKK 435 >gi|56750458|ref|YP_171159.1| chromosomal replication initiation protein [Synechococcus elongatus PCC 6301] gi|56685417|dbj|BAD78639.1| chromosomal replication initiator protein DnaA [Synechococcus elongatus PCC 6301] Length = 482 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 149/473 (31%), Positives = 258/473 (54%), Gaps = 30/473 (6%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E + E ++ + RL++Q+ + +W + + ++ LS P F + W++ Y Sbjct: 20 AVEQSLEHLWEQILERLQHQLSRPTFETWIKTATAEAFDGKVLRLSTPNPFARNWLQKYY 79 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS---PSITKLSPINTNISKSPIILG 146 L TI + E G+E+ + ++ S E + + P+I+ P + K P Sbjct: 80 LRTIADVAAEILG--HGIELQIGVLSDTSAEPESGAELWPAIS--PPPAVEVVKPPTTTA 135 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + P+ S L+ ++VFS F+ G+ NR+A A+ +IAE Y NPLF+ VG Sbjct: 136 GR--PPLRSSDLNPKYVFSRFVVGAYNRMAHAASLAIAEYPGREY-----NPLFLCGGVG 188 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QAI + ++ P+ ++ Y++ E F +AIR + + ++ R D++++D Sbjct: 189 LGKTHLMQAIGHYRLEIDPDAKIFYVSTEQFTNDLIAAIRRDSMQSFREHYRAADVIMVD 248 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF++GK Q EF + NSL ++ KQ+V A+DRPPS++ L R+ SR G+ + Sbjct: 249 DIQFIEGKEYTQEEFFYTFNSLHEAGKQIVLASDRPPSQIPRLQERLISRFSMGLIADIQ 308 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL+ + E + + +V+ ++A T++ REL+GA + V S + Sbjct: 309 PPDFETRVAILQKK-----SEFENMPLPRDVIEYIAARYTSNIRELEGALTRAVAYASIS 363 Query: 386 PI-LT-AEIADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + LT A IA L T T+KM + E I + VA+ +++S DL N R R V Sbjct: 364 GLALTLANIAPVL------TPPTEKMELSPEMILQTVAETFDVSIEDLRGNSRRREVSLA 417 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RQV MYL + T S P+IG +FG +DHTTV+++ K+ ++ ++D + K+++ Sbjct: 418 RQVGMYLMRQHTDLSLPKIGEQFGGKDHTTVMYSCEKIGQLRQSDPQMGKQLQ 470 >gi|56459113|ref|YP_154394.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR] gi|61212492|sp|Q5QY39|DNAA_IDILO RecName: Full=Chromosomal replication initiator protein DnaA gi|56178123|gb|AAV80845.1| ATPase involved in DNA replication initiation [Idiomarina loihiensis L2TR] Length = 454 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 149/469 (31%), Positives = 253/469 (53%), Gaps = 23/469 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ + RL++++ + +W + L+ + + L P + W++++YL+TI Sbjct: 4 SLWQQCAERLQSELPLQQFNTWIRPLQ-AKLNGETLTLFAPNIYSVDWVRDKYLKTINTY 62 Query: 97 FQE-EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + ++ V +L A P+ + S N S G + F Sbjct: 63 LEALCDDKVPNV-VLKVGEASPTQRDSGSPQRAAATRRKTPNFSS-----GNTDVEVPFE 116 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S + + F F+EG SN++A AA +AE Y NPLF++ GLGKTHLL A Sbjct: 117 SNIHPEYTFDNFVEGKSNQLARAAAIQVAENPGGVY-----NPLFVYGGTGLGKTHLLHA 171 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + N + + + +V Y+ AE F+ ++IR++ K R++D LLIDD+ F K Sbjct: 172 VGNGIMAHKKDAKVFYIRAERFVQDMVNSIRNSSTNEFKRYYRSVDALLIDDIHFFANKK 231 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +D P E++ ++ R++SR G+++ + + E R + Sbjct: 232 GSQEEFFHTFNALLEGNQQIIMTSDLYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVA 291 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV--FRHSFAPILTAEI 392 IL + + ++ L++ EV +A+ + ++ REL+GA N++V + + PI T + Sbjct: 292 IL-----MRKADERGLHMPHEVAFFIAKRLRSNVRELEGALNRVVANVQLTGRPI-TIDF 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + I++IQ+ VA++YNI D+LS RR R+V RPRQ+AM L+K + Sbjct: 346 VREALRDLIAAQE-KLVTIDNIQKTVAEYYNIKLADILSKRRSRSVARPRQLAMALAKEL 404 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK++++ + +K++ L R +S Sbjct: 405 TNHSLPEIGDAFGGRDHTTVLHACRKIQELKDAQHDIKEDYRNLIRTLS 453 >gi|329576316|gb|EGG57831.1| replication initiator protein DnaA [Enterococcus faecalis TX1467] Length = 447 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 206/349 (59%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ AI Sbjct: 111 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLMHAIG 165 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL K Sbjct: 166 HQMLVNQPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAEKEAT 225 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R +IL Sbjct: 226 LEEFFRTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETRIAIL 285 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + + +L I ++ L ++A + ++ REL+GA LV +FA I +T + Sbjct: 286 RKK-----ADAERLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFATINGEDITTSL 337 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ M Sbjct: 338 AADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLAREM 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG +DHTTV+HA K++++LE + ++KEV +K L++ Sbjct: 398 TDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLERNPAIQKEVSEIKNLLN 446 >gi|189501471|ref|YP_001957188.1| chromosomal replication initiation protein [Candidatus Amoebophilus asiaticus 5a2] gi|189496912|gb|ACE05459.1| chromosomal replication initiator protein DnaA [Candidatus Amoebophilus asiaticus 5a2] Length = 477 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 149/481 (30%), Positives = 261/481 (54%), Gaps = 35/481 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 CE I+ + +K QV + +WF + + +NI+ + VP+ F W++ YL + Sbjct: 5 CELIWNNCLAFIKGQVNEQSFKTWFTPIVPKKLENNILTIQVPSQFFYEWLEEHYLGLLR 64 Query: 95 KLFQEE---HSRIQGVEILVR--------SVALPS----VEKTASSPSITKLSPINTNIS 139 ++ +E R++ I+ + ++ LP+ ++ + PS+T SP N Sbjct: 65 QVIMQEIGPQGRLEYSIIVDQGNNQRAPVTINLPTQRNYIQGNNNQPSLTD-SPHNPFTL 123 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 K+ L + S L+ + F TFIEG N++A +AAQ++A+ + NPL Sbjct: 124 KNFKDLHQ-------ASYLNPNYTFETFIEGDCNQLARSAAQAVAKKPGNN----AFNPL 172 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 ++ VGLGKTH++QA+ N N V+Y ++E F +F ++R+N + Sbjct: 173 MLYGKVGLGKTHIVQALGNEVKAHFSNKFVLYASSEQFTTQFIESLRNNSVQDFTHFYLQ 232 Query: 260 IDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 D+L++DD+QFL GK E F H+ N L S KQ+V +D PP +L+ L R+ SR + Sbjct: 233 ADVLILDDVQFLVGKEKTQEIFFHIFNHLHQSGKQIVMTSDCPPRDLKGLQERLLSRFKW 292 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++ L D+E R +I+KN++ + ++I E+++ ++A++V T+ REL+G L Sbjct: 293 GLTADLQQPDFETRIAIIKNKI-----QADGIDIGEDLVEYIAQSVDTNIRELEGVIISL 347 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + S + +A ++L ++V+ +T+ + I+ + ++V +H+N+S + S R + Sbjct: 348 IAHASLNKRDVDLGLAKQVLKNIVHDIDTE-ISIDYLHKIVTEHFNVSLESIKSKTRKKE 406 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V RQVAMYL+K T S IG+ G RDH+TV+HA++ V+ ML T+ K E +K Sbjct: 407 IVIARQVAMYLAKHYTNHSLKSIGQYCGGRDHSTVIHAIQAVDDMLHTEHQFKASFEEIK 466 Query: 498 R 498 R Sbjct: 467 R 467 >gi|56477034|ref|YP_158623.1| chromosomal replication initiation protein [Aromatoleum aromaticum EbN1] gi|71151792|sp|Q5P4P0|DNAA_AROAE RecName: Full=Chromosomal replication initiator protein DnaA gi|56313077|emb|CAI07722.1| Chromosomal replication iniciator protein DnaA [Aromatoleum aromaticum EbN1] Length = 481 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 148/488 (30%), Positives = 250/488 (51%), Gaps = 34/488 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI---VHLSVPTNFLKAWIKNRYLET 92 + +++ SRL++++ P + +W + L+ + L P+ F+ W++ RYL Sbjct: 3 QDLWSFCLSRLEHELPPQQFNTWIKTLQADEEKAGASVALRLVAPSRFVLQWVRERYLRR 62 Query: 93 ITKLFQEEHSRIQGVEILVRS-----------VALPSVEKTASSPSITKLSPINTNISKS 141 I +L E H +E+++ + + V A +P+ ++ Sbjct: 63 IGELGAEFHGAPIEIELVLPAAGAARPAARPVIGSGPVAGPAPAPTPSQAPAATAAAPAV 122 Query: 142 PIILGKQTISPVFGSPL-------DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + S V S L ++ F F T + G +N +A AA +A+ Y Sbjct: 123 VTRPAEPESSIVTASDLAYEKTRLNADFTFDTLVTGRANDLARAAAMQVAQNPGTSY--- 179 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLF++ VGLGKTHL+ AI NA + P + Y+ E + A + K Sbjct: 180 --NPLFVYGGVGLGKTHLVHAIGNAVYRHNPRAVIRYVHVEDYYADVVRAYQQKSFDAFK 237 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R++DLLLIDD+QF K Q EF H N+L ++ KQ+V D P +++ L+ R+ Sbjct: 238 RYYRSLDLLLIDDIQFFNNKNRTQEEFFHAFNALTEARKQIVITCDTYPKDIQGLEDRLI 297 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G++V + + EMR +IL+ + E +++++++V +A+ + ++ REL+G Sbjct: 298 SRFDWGLTVQIEPPELEMRVAILQKK-----AEALRVDLHDDVAFLIAKNLRSNVRELEG 352 Query: 374 AFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A N++V F +T E+A + L L+N +++ IE IQ+ VA +Y I D+ S Sbjct: 353 ALNKVVAFARFHGRGITLEVAKDALKDLLN-AHNRQLTIEHIQKTVADYYKIKVADMHSK 411 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 +R R + RPRQVAM+L+K +TP S P IG FG RDHTTV+HA R + ++ D L + Sbjct: 412 KRTRVIARPRQVAMWLAKDLTPMSLPAIGEAFGGRDHTTVMHACRTIAELRLGDHQLNHD 471 Query: 493 VELLKRLI 500 V +L +++ Sbjct: 472 VHVLTQVL 479 >gi|307825356|ref|ZP_07655575.1| chromosomal replication initiator protein DnaA [Methylobacter tundripaludum SV96] gi|307733531|gb|EFO04389.1| chromosomal replication initiator protein DnaA [Methylobacter tundripaludum SV96] Length = 438 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 149/469 (31%), Positives = 251/469 (53%), Gaps = 38/469 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK- 95 SI+ S+L+N++ +++W + L+ I L P F+ W+K + I + Sbjct: 3 SIWNNCLSKLENEISGSDFSTWIRPLQAIESDEQI-KLLAPNRFVLDWVKEHHFAKIEET 61 Query: 96 LFQEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +++ + + +EI R+ ++ + K A P+ G Q SP F Sbjct: 62 IYEFSNGTLNLSLEIGSRNSSVATAAKVAK-PA------------------GSQKSSPNF 102 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ F F F+EG SN++A A+ ++E Y NPL I+ S GLGKTH++ Sbjct: 103 ---LNKAFTFDNFVEGKSNQLARAASMQVSENIGKAY-----NPLLIYGSSGLGKTHMMH 154 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI NA +++ P+ VVYL +E F+ A++ N K+ R +D+LLIDD+QF GK Sbjct: 155 AIGNAVLQKNPSATVVYLHSEKFVQDMVKALQQNSINAFKEFYRGVDVLLIDDIQFFAGK 214 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ QV+ D+ P E+ L+ R++SR G+ V + D E R Sbjct: 215 ERSQEEFFHTFNTLLEKKHQVILTCDKYPKEIIGLEDRLKSRFGWGLPVLIEPPDMETRA 274 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL + A+ E + ++V +A+ + ++ R+L+GA +++ F +T E Sbjct: 275 AILMKKAALVNIE-----LAQDVAFFIAKRIPSNVRDLEGALRRVIANAQFTGREITIEF 329 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L++ + K + I++IQ+ VA+++ I DL S R +++ RPRQ+AM L++ + Sbjct: 330 TKEALHDLISL-QDKLVNIDNIQKTVAEYFKIRVADLSSKNRKQSITRPRQMAMCLAREL 388 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T SFPEIG FG RDHTTV++A +++ ++ E D + ++ L R +S Sbjct: 389 TSHSFPEIGDAFGGRDHTTVMNACKRIAELKEADNKIAEDYSNLLRTLS 437 >gi|307294072|ref|ZP_07573916.1| chromosomal replication initiator protein DnaA [Sphingobium chlorophenolicum L-1] gi|306880223|gb|EFN11440.1| chromosomal replication initiator protein DnaA [Sphingobium chlorophenolicum L-1] Length = 470 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 255/471 (54%), Gaps = 27/471 (5%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQ--RLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + E+ + + + L+ +GP ++ W + +L + + L ++F ++ ++ Sbjct: 19 DARLETAWATIRAGLRRDIGPRMFDQWLKAAQLGDYCPESQTLDLLFASDFTANFVSGQF 78 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + ++ + ++ + +L A P + +L +S + Sbjct: 79 GDRLRMAWRCAGAGVRELRLLR--------APNAVGPRVLELHQTEEAVSDDTV---ADA 127 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + P S R F F+ G +N +A +AAQ++A G R +PLFIH G GK Sbjct: 128 LPPA--SNFQPRHGFDGFVTGETNHLAFSAAQAMA-----GEGQPRFSPLFIHGGTGQGK 180 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AIA P+ V+Y++AE FM F +A+R N + K LR LLLIDD+Q Sbjct: 181 THLLHAIARLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLIDDIQ 240 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H +N L+DS ++ ADR P L+++DPRI SRL GG+ + Sbjct: 241 FIAGKGSTQEEFLHTINDLIDSGARIAITADRAPQMLDAIDPRILSRLAGGLVADIRPAG 300 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPI 387 ++R +IL+ + AI+ DP + + V+ +AR++ ++ REL+GAFN+L+ + Sbjct: 301 LDLRLAILEAKRAIAG--DPP--VPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTGRS 356 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E A +L+ V +++ +++IQ+ A HY I ++ S RR R V RPRQVAMY Sbjct: 357 IDLEFAQAMLADAVRA-NARRITVDEIQKACAAHYKIDAAEMRSKRRARAVARPRQVAMY 415 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 L+K MTPRS PEIGR FG RDH+TV+HAVR +E + +++ + ++ L+R Sbjct: 416 LAKKMTPRSLPEIGRIFGGRDHSTVIHAVRTIEGLRQSNPDIDADIRALQR 466 >gi|171778195|ref|ZP_02919424.1| hypothetical protein STRINF_00263 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283019|gb|EDT48443.1| hypothetical protein STRINF_00263 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 452 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 207/355 (58%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L++++ F F++G NR A +A+ ++A+ Y NPLFI GLGKTH Sbjct: 107 PQVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTY-----NPLFIWGGPGLGKTH 161 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI NA ++ P RV Y+TAE F+ F IR + LK+ RN+D+LLIDD+Q L Sbjct: 162 LLNAIGNAVLQNNPKARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLIDDIQSL 221 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L D+ KQ+V +DR P L++L+ R+ +R + G+++ + D Sbjct: 222 AKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTINITPPD 281 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N+ +Q+ D ++ + ++A ++ R+L+GA + S + Sbjct: 282 FETRVAILTNK---TQEYD--FVFPQDTIEYLAGQFDSNVRDLEGALKDISLVASIKKVQ 336 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +IA E + G + + IE+IQ V K Y ++ ++ + +R + +V RQVA Sbjct: 337 TITVDIAAEAIRARKQDGPKMTVIPIEEIQSQVGKFYGVTVKEIKATKRTQDIVLARQVA 396 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E+E +K I Sbjct: 397 MYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIETIKNKI 451 >gi|254435499|ref|ZP_05049006.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] gi|207088610|gb|EDZ65882.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] Length = 452 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 153/433 (35%), Positives = 233/433 (53%), Gaps = 28/433 (6%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITK 130 + L P F+ W++N I L S RI+ + V S +L P I Sbjct: 41 LQLYAPNQFVIDWVQNCAESRINALLSHYSSGRIEKALLEVGSCSL------QPQPHIQA 94 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + + + S ++ + + S L+ + F +F+EG SN++ A+ +AE Sbjct: 95 VELTSKSARSSSRVVDR-----IPESRLNKNYTFDSFVEGKSNQLPRAASHQVAENPGSA 149 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ VGLGKTHL+ A+ N R P+ RVVYL +E F+ A++ N Sbjct: 150 Y-----NPLFIYGGVGLGKTHLMHAVGNYIRSRNPSARVVYLHSEQFVAEMIKALQLNAI 204 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 K R++D+LLIDD+QF GK Q EF + N+LL+ Q++ DR P E+ L+ Sbjct: 205 NEFKTRYRSVDILLIDDIQFFAGKERSQEEFFYTFNTLLEVQHQIILTCDRFPKEVNGLE 264 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR G++V + + E R +IL N+ +I + ++++V + R + ++ R Sbjct: 265 ERLTSRFGWGLTVAVEPPELETRVAILMNKASIE-----NIILSDDVAFFLGRLIYSNIR 319 Query: 370 ELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 EL+GA +++ F PI T E+ E L L+ T + K + IE+IQ+ VA++Y I + Sbjct: 320 ELEGALRRVIAYSRFTHRPI-TMELTREALKDLL-TLQEKLVTIENIQKTVAEYYKIRVS 377 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DL S RR R V RPRQ AM LSK +T S EIG+ FG RDHTTVLHA RK+ ++ D Sbjct: 378 DLSSKRRSRVVARPRQTAMSLSKELTDHSLTEIGKFFGGRDHTTVLHACRKINELKSIDR 437 Query: 488 TLKKEVE-LLKRL 499 + ++ LLK+L Sbjct: 438 RMAEDYHNLLKKL 450 >gi|81251104|gb|ABB69899.1| DNA replication initiator protein [Nitrosomonas sp. OZK11] Length = 458 Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 151/472 (31%), Positives = 247/472 (52%), Gaps = 27/472 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETI 93 E+ + K ++ + +W + LK NI+ L P F+ WIK+ ++ I Sbjct: 5 ETFWHSCLKHFKQELNGQQFNTWIKPLKLEVCPDEENILVLIAPNRFVLQWIKDNFVTRI 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSP---SITKLSPINTNISKSPIILGKQTI 150 ++ + + +R P E A+ P S + P+ K+PII K+ Sbjct: 65 DEMALAHFNEKIRFRLELRES--PETETAATKPVQKSKVEKKPV---AEKTPIIASKKN- 118 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P S L+ F F F+ G +N++A A +AE Y NPLFI+ VGLGKT Sbjct: 119 NP---SQLNPGFTFDAFVTGKANQLARAGAIQVAERPGIAY-----NPLFIYGGVGLGKT 170 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI N + ++ Y+ AE ++ SA + K ++DLLL+DD+QF Sbjct: 171 HLMQAIGNCVLDLDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQF 230 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L+++ KQV+ +D P E+ L+ R+ SR G++V + + Sbjct: 231 FSGKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPEL 290 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPIL 388 EMR +IL + + K+ ++E +A+ + ++ REL+GA + L F + Sbjct: 291 EMRVAIL-----LKKAHAEKIALDENTAFFIAKYIRSNVRELEGALKRILAFSRFTGHPI 345 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A E L L+ + +++ IE+IQ+ VA +Y I D+ S +RVRT+ RPRQVAM + Sbjct: 346 TLDLAKEALKDLLAI-QNRQISIENIQKTVADYYKIKVADMYSKKRVRTIARPRQVAMAI 404 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K +T S P+IG FG RDHTTVLHA RK+ ++ +D + ++ L ++ Sbjct: 405 AKELTQLSLPDIGEAFGGRDHTTVLHAHRKIIELRTSDPGINRDFNALMHIL 456 >gi|294101016|ref|YP_003552874.1| chromosomal replication initiator protein DnaA [Aminobacterium colombiense DSM 12261] gi|293615996|gb|ADE56150.1| chromosomal replication initiator protein DnaA [Aminobacterium colombiense DSM 12261] Length = 442 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 141/439 (32%), Positives = 239/439 (54%), Gaps = 33/439 (7%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 W + SV+++++ + VP F+K I R+ I + ++ Q +E+ V S A Sbjct: 29 WLKTCVPLSVMNDVLVIDVPNVFVKEQISKRFQNVIEDVLMDK-GYAQSLELKVASEARK 87 Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 ++ A + Q + S L+ ++F++F+ G SNR+A Sbjct: 88 DEQQRAERAA--------------------QHTGTLPRSGLNPNYIFNSFVVGKSNRLAH 127 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 A+ ++AE Y NPLFI VGLGKTHL+ AI + + + +L+V Y+++E F Sbjct: 128 AASLAVAETPGEAY-----NPLFIWGGVGLGKTHLMHAIGHYVLNKNNSLKVTYVSSEKF 182 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 + F +I++N K R++D+LLIDD+QFL K Q EF H N L S KQ+V Sbjct: 183 INEFIQSIKNNRTQEFKSKYRSVDILLIDDIQFLGNKGSSQEEFFHTFNQLHVSKKQIVI 242 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 +DRPP E+++++ R+ SR + G+ + + D E R +IL+ + I E P E+V Sbjct: 243 CSDRPPKEIQNIEDRLVSRFEWGLVTDIQMPDLETRIAILQKKAQIRNYEVP-----EDV 297 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQ 415 + +A+ V ++ REL+GA N+++ + +T E A + L ++ + ++ IQ Sbjct: 298 ISFLAQNVPSNIRELEGALNRIIACAELNSEPITEENATQWLKDIIRHNSKGPVSVDTIQ 357 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 ++VA++++++ DL+ NRR + RQVAMYL + +T S +IG F +DHTTVLHA Sbjct: 358 QIVAENFSLTVEDLVGNRRTSDIALARQVAMYLCRKLTDISLQQIGFSFKKKDHTTVLHA 417 Query: 476 VRKVEKMLETDITLKKEVE 494 RK+ K++E +K+ V+ Sbjct: 418 QRKISKLVEEQPRMKEIVD 436 >gi|150025276|ref|YP_001296102.1| chromosomal replication initiator protein DnaA [Flavobacterium psychrophilum JIP02/86] gi|166201882|sp|A6GYW8|DNAA_FLAPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|149771817|emb|CAL43291.1| Chromosomal replication initiator protein DnaA [Flavobacterium psychrophilum JIP02/86] Length = 478 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 152/490 (31%), Positives = 258/490 (52%), Gaps = 43/490 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ES++ S +K+ + Y +WF+ +K + N +++ VP+ F W++ Y++ + Sbjct: 8 AESVWDNCLSFIKDNIQEQAYKTWFEPIKSVELTDNALYIQVPSKFFYEWLEEHYVKLLK 67 Query: 95 KLFQEEHSRIQGVEILVR-------SVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +E + ++L + LP E+ S+ SP+ T P+ Sbjct: 68 VALTKELGK--NAKLLYKIKMENTYGNKLPFTEQLPSAHR----SPVRTQEIDVPV---- 117 Query: 148 QTISPVFGSP--------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 Q +P +P L++ + F F+EG SNR+A +A ++A + G T+ Sbjct: 118 QQKNPELRNPFIIPGIRNLKIESQLNANYSFDNFLEGDSNRLARSAGMAVA--NKPGGTS 175 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPL I VGLGKTHL AI ++ P V+Y++AE F ++ +++ N + Sbjct: 176 --FNPLLIFGGVGLGKTHLAHAIGVEVKEKYPEKTVLYISAEIFTQQYIESVKKNNRNDF 233 Query: 254 KDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ Sbjct: 234 IHFYQLIDVLIIDDVQFLSGKTGTQDVFFHIFNYLHQNGKQVILTSDKAPVDMQDIEQRL 293 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 SR + G+S + DYE R SILKN L E P EE++ +VAR + ++ REL+ Sbjct: 294 LSRFKWGLSAEIHQPDYETRISILKNILYRDGVEMP-----EEIIEYVARNIKSNVRELE 348 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA L+ + SF +T E+A +++ V + +++ I+ IQ++V+ ++ + L S Sbjct: 349 GAIISLIAQSSFNKKEVTLELAKQVVEKFVKNVK-REVSIDYIQKVVSDYFQLDLEVLQS 407 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 R R VV+ RQ+AM+ +K T S IG + GDRDH TVLHA + V+ ++ TD KK Sbjct: 408 KTRKRHVVQARQLAMFFAKRYTKASLANIGSQIGDRDHATVLHACKTVDNLVTTDKQFKK 467 Query: 492 EVELLKRLIS 501 V+ + + +S Sbjct: 468 FVDDINKKLS 477 >gi|81427617|ref|YP_394614.1| chromosomal replication initiation protein A [Lactobacillus sakei subsp. sakei 23K] gi|123755887|sp|Q38ZS4|DNAA_LACSS RecName: Full=Chromosomal replication initiator protein DnaA gi|78609256|emb|CAI54303.1| Chromosomal replication initiation protein A [Lactobacillus sakei subsp. sakei 23K] Length = 448 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 132/345 (38%), Positives = 203/345 (58%), Gaps = 18/345 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F TF+ G N++A AA ++E V NPLF++ VGLGKTHL+QAI Sbjct: 112 LNSKYTFDTFVTGKGNQMAHAAALVVSEEPG-----VLYNPLFLYGGVGLGKTHLMQAIG 166 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + ++ +P V Y+T+E F F ++I+ + RN+DLLL+DD+QF K Sbjct: 167 HQLLESKPETNVKYVTSEAFANDFINSIQTKNQEKFRQEYRNVDLLLVDDIQFFADKEGT 226 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L + KQ+V +DR P+E+ L R+ SR + G+ V + D E R +IL Sbjct: 227 QEEFFHTFNDLYNDKKQIVLTSDRLPNEIPKLQERLVSRFKWGLPVDITPPDLETRIAIL 286 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 +N+ + L I E+ L ++A + ++ REL+GA LV ++A + AEI Sbjct: 287 RNK-----ADAEHLEIPEDTLSYIAGQIDSNVRELEGA---LVRVQAYATMQNAEITTSL 338 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L G++ ++ I IQ +VAK+Y+++ DL +RV+ +V PRQ+AMYL++ M Sbjct: 339 AADALKGLKLNGKSSQLSIAKIQSVVAKYYSLTVADLKGRKRVKEIVLPRQIAMYLAREM 398 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 T S P+IG+ FG +DHTTV+HA ++ + L TD LK + LK Sbjct: 399 TDSSLPKIGQEFGGKDHTTVMHAHERISQSLTTDQNLKDAILDLK 443 >gi|325478855|gb|EGC81965.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii ACS-065-V-Col13] Length = 459 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 210/366 (57%), Gaps = 19/366 (5%) Query: 146 GKQTISPVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 G+ I+ V P L+ +F F+EG SN+ AL +Q++A+ S+ NPLFI+ Sbjct: 104 GQMRINQVTSFPRPQLEDENIFENFVEGKSNQYALGVSQAVAQNISNKSQARLYNPLFIY 163 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHL+QAIA+ + + + V+YL++E F +A+R ++ R++D+ Sbjct: 164 GESGLGKTHLMQAIAHEILDNRDDAYVMYLSSEKFTNEMIAALRSTKNEKFREKYRSVDI 223 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ GK Q EF H N L ++ KQ+V ++DRPP E++ L+ R+ SR G+ Sbjct: 224 LLIDDIQFIAGKEGTQEEFFHTFNDLYNTGKQIVISSDRPPKEIKRLEDRLVSRFSWGII 283 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V +G D+E R +IL+ +L + I+ E+L ++A + T+ R+L+GA + + Sbjct: 284 VDIGKPDFETRVAILQKKL-----DQLGAYIDNEILFYIAENIDTNIRDLEGALSTAI-- 336 Query: 382 HSFAPILTAEIADELLSHLVNTG-----ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 ++A E+ + ++ G + K + IEDIQ+ VA Y + DL R + Sbjct: 337 -AYAKSDNREVV-TMEDAIIGVGTRVQNKKKHVNIEDIQKQVADKYGVKLTDLKGKSRKK 394 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V PRQ+AMYLS+ + S I F DRDHTT++H + K++K +E D KKE+E L Sbjct: 395 EIVNPRQIAMYLSREILNDSLVTIANSF-DRDHTTIIHGIEKIQKQIEDDEDFKKEIESL 453 Query: 497 KRLISE 502 + ++E Sbjct: 454 YKDLTE 459 >gi|254468744|ref|ZP_05082150.1| chromosomal replication initiator protein DnaA [beta proteobacterium KB13] gi|207087554|gb|EDZ64837.1| chromosomal replication initiator protein DnaA [beta proteobacterium KB13] Length = 450 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 140/470 (29%), Positives = 255/470 (54%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E + I+S++LK ++ + +W + L + + + P F++ W+ +R+ + Sbjct: 1 MKTEEFWEIISTQLKKKLTAQQFKTWVKPLSIREK-EDSLEIVAPNQFIQQWVTDRFSKE 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ +E +I+ + V + + T +S + P + ++P K I+ Sbjct: 60 IIEIGKEH--KIKNKILFVTEKGKKNSKPTNTSEEKNDVKPKVED--RAP----KAVINK 111 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G L+ F F+ G +N++A AA+ ++E Y NPLFI+ VGLGKTHL Sbjct: 112 STG--LNKNLNFENFVTGRANQLATAAAKQVSERPGESY-----NPLFIYGGVGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 LQ+I N + + ++ YL AE ++ A K + ++DLLLIDD+QF+ Sbjct: 165 LQSIGNKVKEENKDFKIKYLHAERYVTDVVKAYEGKTFDQFKKNYHSLDLLLIDDIQFIG 224 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N+L+++ KQ++ D P E++ +D R+R+R G++V + + EM Sbjct: 225 KKNRTQEEFFYAFNTLIENKKQIIITCDSYPKEIQGVDERLRTRFSWGLTVAIEPPELEM 284 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL + IS K+ + E+V +A+ + ++ REL+GA N++V +F + + Sbjct: 285 RVAILLKKAEIS-----KITLPEDVAFFIAKQIRSNVRELEGALNRIVALSNFTNLPIDL 339 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L L+ +++ IE+IQ+ VA +Y I +D++ +R R +PRQVAM L++ Sbjct: 340 NLAKEALKDLIAV-RGRQVTIENIQKTVADYYKIKISDMVGKKRSRNFSKPRQVAMALTR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S+PEIG FG R HTTV+HA ++E+ + +L +++ L +++ Sbjct: 399 ELTNLSYPEIGNYFGGRHHTTVMHACEEIEEQRLNNQSLGQDLGFLTQVL 448 >gi|77163562|ref|YP_342087.1| chromosomal replication initiator protein, DnaA [Nitrosococcus oceani ATCC 19707] gi|123757965|sp|Q3JF39|DNAA_NITOC RecName: Full=Chromosomal replication initiator protein DnaA gi|76881876|gb|ABA56557.1| chromosomal replication initiator protein, DnaA [Nitrosococcus oceani ATCC 19707] Length = 449 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 153/433 (35%), Positives = 233/433 (53%), Gaps = 28/433 (6%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITK 130 + L P F+ W++N I L S RI+ + V S +L P I Sbjct: 38 LQLYAPNQFVIDWVQNCAESRINALLSHYSSGRIEKALLEVGSCSL------QPQPHIQA 91 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + + + S ++ + + S L+ + F +F+EG SN++ A+ +AE Sbjct: 92 VELTSKSARSSSRVVDR-----IPESRLNKNYTFDSFVEGKSNQLPRAASHQVAENPGSA 146 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ VGLGKTHL+ A+ N R P+ RVVYL +E F+ A++ N Sbjct: 147 Y-----NPLFIYGGVGLGKTHLMHAVGNYIRSRNPSARVVYLHSEQFVAEMIKALQLNAI 201 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 K R++D+LLIDD+QF GK Q EF + N+LL+ Q++ DR P E+ L+ Sbjct: 202 NEFKTRYRSVDILLIDDIQFFAGKERSQEEFFYTFNTLLEVQHQIILTCDRFPKEVNGLE 261 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR G++V + + E R +IL N+ +I + ++++V + R + ++ R Sbjct: 262 ERLTSRFGWGLTVAVEPPELETRVAILMNKASIE-----NIILSDDVAFFLGRLIYSNIR 316 Query: 370 ELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 EL+GA +++ F PI T E+ E L L+ T + K + IE+IQ+ VA++Y I + Sbjct: 317 ELEGALRRVIAYSRFTHRPI-TMELTREALKDLL-TLQEKLVTIENIQKTVAEYYKIRVS 374 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DL S RR R V RPRQ AM LSK +T S EIG+ FG RDHTTVLHA RK+ ++ D Sbjct: 375 DLSSKRRSRVVARPRQTAMSLSKELTDHSLTEIGKFFGGRDHTTVLHACRKINELKSIDR 434 Query: 488 TLKKEVE-LLKRL 499 + ++ LLK+L Sbjct: 435 RMAEDYHNLLKKL 447 >gi|306834600|ref|ZP_07467712.1| DNA-directed DNA replication initiator protein [Streptococcus bovis ATCC 700338] gi|304423236|gb|EFM26390.1| DNA-directed DNA replication initiator protein [Streptococcus bovis ATCC 700338] Length = 451 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 127/355 (35%), Positives = 208/355 (58%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P+ S L++++ F F++G NR A +A+ ++A+ Y NPLFI GLGKTH Sbjct: 106 PLVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTY-----NPLFIWGGPGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI NA ++ PN RV Y+TAE F+ F IR + LK+ RN+D+LLIDD+Q L Sbjct: 161 LLNAIGNAVLQNNPNARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLIDDIQSL 220 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L D+ KQ+V +DR P L++L+ R+ +R + G+++ + D Sbjct: 221 AKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTINITPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N+ ++ ++ + ++A ++ R+L+GA + S I Sbjct: 281 FETRVAILTNK-----TQEYNYIFPQDTIEYLAGQFDSNVRDLEGALKDISLVASIKKIE 335 Query: 388 -LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T ++A E + + + + + I++IQ V K Y ++ ++ + +R + +V RQVA Sbjct: 336 TITVDVAAEAIRARKQDDPKMTVIPIDEIQSQVGKFYGVTVKEIKATKRTQDIVLARQVA 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E+E +K I Sbjct: 396 MYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIETIKNKI 450 >gi|119896293|ref|YP_931506.1| chromosomal replication initiation protein [Azoarcus sp. BH72] gi|166201859|sp|A1K1B4|DNAA_AZOSB RecName: Full=Chromosomal replication initiator protein DnaA gi|119668706|emb|CAL92619.1| chromosomal replication initiator protein [Azoarcus sp. BH72] Length = 480 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 147/487 (30%), Positives = 254/487 (52%), Gaps = 33/487 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN---IVHLSVPTNFLKAWIKNRYLET 92 + + +RL+ ++ + +W + L+ + + L+ P F+ W++ RY+ Sbjct: 3 QDFWPFCLARLEQELPQQQFNTWIKTLQAAESDADGAVALTLTAPNRFVLQWVRERYMRR 62 Query: 93 ITKLFQEEHSRIQGVEILV-------RSVALPSVEKTASSPSITKLSPINTNISKSP--- 142 I +L +E H + +E+ + VA V ++ SP+ +S++ Sbjct: 63 IGELGEEFHGQPIQLELQLPVAGAKSAPVAPARVRPAGANGGAAANSPMAPPVSEAAPPQ 122 Query: 143 IILGKQTISPVFGSPL-------DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 II+ PV + L ++ F F T + G +N +A AA +A+ Y Sbjct: 123 IIVRPSEPEPVSANELAYDKTRLNADFTFDTLVTGRANDLARAAAMQVAQNPGTSY---- 178 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLF++ VGLGKTHL+ AI NA + P + + Y+ E + A + K Sbjct: 179 -NPLFVYGGVGLGKTHLVHAIGNAVYRHNPRMVIRYVHVEDYYADVVRAYQQKSFDAFKR 237 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R++D+L+IDD+QF K Q EF H N+L ++ KQ+V D P +++ L+ R+ S Sbjct: 238 YYRSLDMLIIDDIQFFNNKNRTQEEFFHAFNALTEAKKQIVITCDTYPKDIQGLEDRLIS 297 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + + EMR +IL+ + E +++++++V +A+ + ++ REL+GA Sbjct: 298 RFDWGLTVQIEPPELEMRVAILQKK-----AEALRVSVDDDVAFLIAKNLRSNVRELEGA 352 Query: 375 FNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N++V F ++ E+A E L L++ +++ IE IQ+ VA +Y I D+ S + Sbjct: 353 LNKVVAYARFHGRGISLEVAKEALKDLLH-AHNRQLSIEHIQKTVADYYKIKVADMHSKK 411 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R + RPRQVAM+L+K +TP S P IG FG RDHTTVLHA R + ++ D L +V Sbjct: 412 RTRVIARPRQVAMWLAKELTPMSLPAIGEAFGGRDHTTVLHACRTITELRLGDHQLNHDV 471 Query: 494 ELLKRLI 500 +L +++ Sbjct: 472 HVLTQVL 478 >gi|226354811|ref|YP_002784551.1| chromosomal replication initiation protein [Deinococcus deserti VCD115] gi|259645247|sp|C1CXJ1|DNAA_DEIDV RecName: Full=Chromosomal replication initiator protein DnaA Length = 459 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 158/470 (33%), Positives = 257/470 (54%), Gaps = 33/470 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY---LE 91 + I+ V ++ + Y +WF LK V + L V +F + W++ +Y LE Sbjct: 5 SQEIWADVLGYVRKNISEVEYHTWFAPLKNLGVQDGSLVLGVRNSFAQEWLRKQYQGLLE 64 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-GKQTI 150 + +H + V LP+ + PS +PI+ + +P ++T+ Sbjct: 65 DALRSLGAQHPQ-------VSFQVLPASQDALLLPSDPPPAPISPGRAPAPPPADNRKTL 117 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKT Sbjct: 118 NP--------KYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLGKT 164 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ A+ + +R P R+ Y++ E F +AIR++ ++ R++DLLL+DD+QF Sbjct: 165 HLMHAVGHYIAERFPEKRIEYVSTETFTNELINAIREDKTTQFRNRYRSVDLLLVDDIQF 224 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ + ++ Sbjct: 225 LAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEF 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK E +++I +EVL +AR VTT+ REL+GA ++V S + Sbjct: 285 ETRVAILK-----MNAEHNRIDIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPF 339 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + +A + LS++ E K+ + D+ R VA H+N+ + + + RVR VV PRQVA YL Sbjct: 340 SRAVASKALSNVFAPQEV-KVEMMDVLRQVASHFNMPPDVIRGSGRVREVVVPRQVAQYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + +T S PEIG+ FG RDH+TV+HA+ KV + L D L VE L+R Sbjct: 399 IRDLTDHSLPEIGQFFG-RDHSTVMHAISKVTEQLGKDSELTAAVETLRR 447 >gi|282881772|ref|ZP_06290430.1| chromosomal replication initiator protein DnaA [Peptoniphilus lacrimalis 315-B] gi|281298382|gb|EFA90820.1| chromosomal replication initiator protein DnaA [Peptoniphilus lacrimalis 315-B] Length = 451 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 257/459 (55%), Gaps = 49/459 (10%) Query: 55 YASWFQRL--KFHSVLHNIVHLSVPTNFLKAWIKN--RYLETITKLFQEEHSRIQGVEIL 110 Y +WF R+ K + + +SVP+ F++ ++ N R+ + + K E + G++ Sbjct: 26 YNTWFSRMLPKSWDYENKKIIISVPSQFIRDYLVNNKRHFDLVKKCLFE----VTGIDFD 81 Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-LDSRFVFSTFIE 169 + ++ E A + + K + F S L+ ++ F +F+ Sbjct: 82 LNIIS----EDEAKNVVLNK---------------NNDSFDDNFQSTRLNPKYSFESFVV 122 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRL---NPLFIHASVGLGKTHLLQAIANASIKRQPN 226 G SN A A+ ++AE Y R NPLFI+ VGLGKTHL+ AI N I + P Sbjct: 123 GKSNEFAHAASLAVAE----NYEDPRKSYSNPLFIYGGVGLGKTHLMHAIGNFIINQDPT 178 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +++Y+T+E F ++I+ N ++ R +DLLLIDD+QF+ K Q EF H N Sbjct: 179 KKILYVTSEQFTNELINSIQKNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFN 238 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L ++ KQ+V +D+PP E++SL+ R+ SR G+ V +G D E R +IL+++ + Sbjct: 239 ELHEANKQIVLTSDKPPKEIKSLEERLISRFAWGLVVDIGQPDLETRIAILRSKANVEG- 297 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE----LLSHLV 401 +++E+V+ ++A V ++ REL+GA +++V +++ + + +I+ E +L+ + Sbjct: 298 ----FDVSEDVINYIAENVKSNIRELEGALSRVV---AYSKLTSGDISIENTAIVLADIF 350 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + + K + ++ I+ ++ K ++I+ +D+ S +R R + PRQ+AMY+++ +T S P+IG Sbjct: 351 ESKKKKVINVKLIKEVICKEFDITISDIDSKKRTRQIAYPRQIAMYITRQITDLSLPKIG 410 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 FG RDH+TV+HA K+EK ++ D K +V +++K++ Sbjct: 411 EEFGGRDHSTVIHAYDKIEKDMQEDPVFKIKVNDIIKKI 449 >gi|148654189|ref|YP_001274394.1| chromosomal replication initiation protein [Roseiflexus sp. RS-1] gi|166215156|sp|A5UP91|DNAA_ROSS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|148566299|gb|ABQ88444.1| chromosomal replication initiator protein DnaA [Roseiflexus sp. RS-1] Length = 481 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 153/487 (31%), Positives = 251/487 (51%), Gaps = 36/487 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N ++ L+ Q+ Y +W + + + + + P F+K +++RYL T Sbjct: 1 MNLTKVWNTTLGSLQVQLPRHEYNTWVRGATLLEIDNGVAIVRAPNAFIKEGLESRYLAT 60 Query: 93 ITKLFQEEHSRIQGVEILVRSV-ALPSVEKTASSPSITKLS-----------PINTNISK 140 + +E+ + G + VR V A P E+ +P + + P+ S Sbjct: 61 L----REQLGSVVGFPVDVRVVLASPDFERFDGAPHNGRSTENETRRTAQSLPLQPGSSS 116 Query: 141 SPIILGKQTISP--------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 + + + P V S L+ R+ F FI G SNR+A A ++AE + Y Sbjct: 117 NGVNHPLERTPPQQLELHRAVRSSMLNPRYTFDRFIIGPSNRLANAACMAVAEHPAQAY- 175 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPLF++ VGLGKTHLL AI N + R P + V+Y+++E F ++IR Sbjct: 176 ----NPLFLYGGVGLGKTHLLHAIGNFVLDRDPEVNVLYVSSETFTNDLINSIRRQQTEE 231 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + RNID+LLIDD+QF+ GK Q EF H N+L + KQ+V ++DR P + +L+ R Sbjct: 232 FRIRYRNIDILLIDDIQFIAGKEQTQEEFFHTFNTLHSAGKQIVISSDRSPKAILTLEER 291 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSR + G+ V + + D E R +IL+ ++ E + + + V+ +A+ + + REL Sbjct: 292 LRSRFEWGLIVDVQMPDLETRTAILR-----AKAEQSPVPVPQPVIDFLAQRIQSHIREL 346 Query: 372 DGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +G N++ F + +T E+A LS L++T K++ + I R VA Y++ L Sbjct: 347 EGCLNRVTAFAQMYNVPVTIEVATAALSELLDTNRRKRVTPDAILREVAAFYSVDLRALQ 406 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 R R +V PRQVAMYL + T S EIG+ G RDHTTV++ K+ + L +D L+ Sbjct: 407 GRSRSRNIVIPRQVAMYLLREETDSSLMEIGQLLGGRDHTTVMYGCEKITEELNSDARLR 466 Query: 491 KEVELLK 497 +EV ++ Sbjct: 467 QEVATIR 473 >gi|317499294|ref|ZP_07957567.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 5_1_63FAA] gi|291558404|emb|CBL37204.1| chromosomal replication initiator protein DnaA [butyrate-producing bacterium SSC/2] gi|316893463|gb|EFV15672.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 5_1_63FAA] Length = 447 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 207/343 (60%), Gaps = 12/343 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G +NR+A A+ ++AE + Y NPLF++ GLGKTHL+ +IA Sbjct: 112 LNPRYTFDTFVIGDNNRMAHAASIAVAEAPAEAY-----NPLFLYGGAGLGKTHLMHSIA 166 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + I+ +L V+Y+T+E F ++I+ L+ RNID+LL+DD+QF+ GK Sbjct: 167 HYIIEHNSSLNVLYVTSEDFTNEVINSIQHKKQEELRSKYRNIDVLLVDDIQFVIGKEST 226 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S KQ++ ++D+PP EL+ L+ R+RSR G+ V + +YE + +IL Sbjct: 227 QQEFFHTFNALYNSKKQIILSSDKPPKELDVLEERLRSRFSWGLPVDIQPPNYETKVAIL 286 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 + R + + I++E+ ++A + ++ R+L+GA N++ V+ + E++ Sbjct: 287 RKRAELDN-----IYIDDEIFDYIATHIKSNIRDLEGALNKIKVYSKLNKKPIDLELSKI 341 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L++ + + E I + VA+H+NI +D++S +R + PRQ+ MYL K MT + Sbjct: 342 ALQDLIDNKTKQAITPELIMQTVAEHFNIQTSDIISKKRSHDIAYPRQICMYLCKKMTDQ 401 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 S +IG G RDH+TV+H + K+EK L+ D L K ++++ + Sbjct: 402 SLVKIGEIIGKRDHSTVIHGIEKIEKDLDKDPELSKVIDVITK 444 >gi|300814770|ref|ZP_07095018.1| chromosomal replication initiator protein DnaA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511157|gb|EFK38409.1| chromosomal replication initiator protein DnaA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 451 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 257/459 (55%), Gaps = 49/459 (10%) Query: 55 YASWFQRL--KFHSVLHNIVHLSVPTNFLKAWIKN--RYLETITKLFQEEHSRIQGVEIL 110 Y +WF R+ K + + +SVP+ F++ ++ N R+ + + K E + G++ Sbjct: 26 YNTWFSRMLPKSWDYENKKIIISVPSQFIRDYLVNNKRHFDLVKKCLFE----VTGIDFD 81 Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-LDSRFVFSTFIE 169 + ++ E A + + K + F S L+ ++ F +F+ Sbjct: 82 LNIIS----EDEAKNVVLNK---------------NNDSFDDNFQSTRLNPKYSFESFVV 122 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRL---NPLFIHASVGLGKTHLLQAIANASIKRQPN 226 G SN A A+ ++AE Y R NPLFI+ VGLGKTHL+ AI N I + P Sbjct: 123 GKSNEFAHAASLAVAE----NYEDPRKSYSNPLFIYGGVGLGKTHLMHAIGNFIINQDPT 178 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +++Y+T+E F ++I+ N ++ R +DLLLIDD+QF+ K Q EF H N Sbjct: 179 KKILYVTSEQFTNELINSIQKNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFN 238 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L ++ KQ+V +D+PP E++SL+ R+ SR G+ V +G D E R +IL+++ + Sbjct: 239 ELHEANKQIVLTSDKPPKEIKSLEDRLISRFAWGLVVDIGQPDLETRIAILRSKANVEG- 297 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE----LLSHLV 401 +++E+V+ ++A V ++ REL+GA +++V +++ + + +I+ E +L+ + Sbjct: 298 ----FDVSEDVINYIAENVKSNIRELEGALSRVV---AYSKLTSGDISIENTAIVLADIF 350 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + + K + ++ I+ ++ K ++I+ +D+ S +R R + PRQ+AMY+++ +T S P+IG Sbjct: 351 ESKKKKVINVKLIKEVICKEFDITISDIDSKKRTRQIAYPRQIAMYITRQITDLSLPKIG 410 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 FG RDH+TV+HA K+EK ++ D K +V +++K++ Sbjct: 411 EEFGGRDHSTVIHAYDKIEKDMQEDPVFKIKVNDIIKKI 449 >gi|85857846|ref|YP_460048.1| chromosomal replication initiator protein [Syntrophus aciditrophicus SB] gi|85720937|gb|ABC75880.1| chromosomal replication initiator protein [Syntrophus aciditrophicus SB] Length = 457 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 159/487 (32%), Positives = 259/487 (53%), Gaps = 45/487 (9%) Query: 26 VDKRCLEVNC--ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D+ C+ N ESI I K ++ P + +W + LK S+ N LSVP F K Sbjct: 1 MDRYCIVDNLWEESIKII-----KEKISPQNFETWIRPLKVVSLEGNHASLSVPNKFFKD 55 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 W+ Y + I+ S G + + V L EK + S + I I + P Sbjct: 56 WLTENYRDVISDAV----SSSAGKDYAIDFVILQESEKNSRSAHPARKKKI---IEQIP- 107 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 ++ I P L+ + F F+ GSSN+ A AA ++AE + Y NPLFI+ Sbjct: 108 ---QEKIRPKIHPTLNPNYSFERFVVGSSNQFAHAAAVAVAEQPAKNY-----NPLFIYG 159 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHLL AI S+ P++ VVY++AE FM +IR + ++ RNID L Sbjct: 160 GVGLGKTHLLNAIGLLSMSIYPDMNVVYVSAEEFMNELILSIRYDKMPQFREKFRNIDCL 219 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+QF+ GK Q EF H N+L DS KQ+V +D+ P ++ +L+ R+RSR + G+ Sbjct: 220 LMDDIQFIAGKERTQEEFFHTFNTLHDSGKQIVVTSDKFPKDIPNLEGRLRSRFEWGLIA 279 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG------AFN 376 + + E + +IL+ + ++ ++I V +++ ++ REL+G A++ Sbjct: 280 DIQPPEIETKIAILEKK-----AQENNIHIPTNVAYYISSHAESNIRELEGFLVRIAAYS 334 Query: 377 QLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 + R+ + ++ E+L ++ E+ ++ E+I + VA YN+ D+ S + + Sbjct: 335 SVTGRN-----IDLDLVKEVLKDIIKHRESDEISFEEILKAVAARYNLKIADIKSQSKNK 389 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK---KEV 493 + RQV MY+++ +T SFP+IG + G RDH+TV++A K+ K+LETD LK +E+ Sbjct: 390 NIAMARQVTMYMARKLTGSSFPDIGEKIGGRDHSTVIYANNKIRKLLETDSRLKATLQEI 449 Query: 494 E--LLKR 498 E LLK+ Sbjct: 450 EDQLLKK 456 >gi|167766864|ref|ZP_02438917.1| hypothetical protein CLOSS21_01381 [Clostridium sp. SS2/1] gi|167711412|gb|EDS21991.1| hypothetical protein CLOSS21_01381 [Clostridium sp. SS2/1] Length = 444 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 121/343 (35%), Positives = 207/343 (60%), Gaps = 12/343 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G +NR+A A+ ++AE + Y NPLF++ GLGKTHL+ +IA Sbjct: 109 LNPRYTFDTFVIGDNNRMAHAASIAVAEAPAEAY-----NPLFLYGGAGLGKTHLMHSIA 163 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + I+ +L V+Y+T+E F ++I+ L+ RNID+LL+DD+QF+ GK Sbjct: 164 HYIIEHNSSLNVLYVTSEDFTNEVINSIQHKKQEELRSKYRNIDVLLVDDIQFVIGKEST 223 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S KQ++ ++D+PP EL+ L+ R+RSR G+ V + +YE + +IL Sbjct: 224 QQEFFHTFNALYNSKKQIILSSDKPPKELDVLEERLRSRFSWGLPVDIQPPNYETKVAIL 283 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 + R + + I++E+ ++A + ++ R+L+GA N++ V+ + E++ Sbjct: 284 RKRAELDN-----IYIDDEIFDYIATHIKSNIRDLEGALNKIKVYSKLNKKPIDLELSKI 338 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L++ + + E I + VA+H+NI +D++S +R + PRQ+ MYL K MT + Sbjct: 339 ALQDLIDNKTKQAITPELIMQTVAEHFNIQTSDIISKKRSHDIAYPRQICMYLCKKMTDQ 398 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 S +IG G RDH+TV+H + K+EK L+ D L K ++++ + Sbjct: 399 SLVKIGEIIGKRDHSTVIHGIEKIEKDLDKDPELSKVIDVITK 441 >gi|315271245|gb|ACO44797.2| putative chromosomal replication initiator protein [Deinococcus deserti VCD115] Length = 456 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 158/470 (33%), Positives = 257/470 (54%), Gaps = 33/470 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY---LE 91 + I+ V ++ + Y +WF LK V + L V +F + W++ +Y LE Sbjct: 2 SQEIWADVLGYVRKNISEVEYHTWFAPLKNLGVQDGSLVLGVRNSFAQEWLRKQYQGLLE 61 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-GKQTI 150 + +H + V LP+ + PS +PI+ + +P ++T+ Sbjct: 62 DALRSLGAQHPQ-------VSFQVLPASQDALLLPSDPPPAPISPGRAPAPPPADNRKTL 114 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKT Sbjct: 115 NP--------KYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ A+ + +R P R+ Y++ E F +AIR++ ++ R++DLLL+DD+QF Sbjct: 162 HLMHAVGHYIAERFPEKRIEYVSTETFTNELINAIREDKTTQFRNRYRSVDLLLVDDIQF 221 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ + ++ Sbjct: 222 LAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEF 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK E +++I +EVL +AR VTT+ REL+GA ++V S + Sbjct: 282 ETRVAILK-----MNAEHNRIDIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPF 336 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + +A + LS++ E K+ + D+ R VA H+N+ + + + RVR VV PRQVA YL Sbjct: 337 SRAVASKALSNVFAPQEV-KVEMMDVLRQVASHFNMPPDVIRGSGRVREVVVPRQVAQYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + +T S PEIG+ FG RDH+TV+HA+ KV + L D L VE L+R Sbjct: 396 IRDLTDHSLPEIGQFFG-RDHSTVMHAISKVTEQLGKDSELTAAVETLRR 444 >gi|74316019|ref|YP_313759.1| chromosomal replication initiator protein DnaA [Thiobacillus denitrificans ATCC 25259] gi|74055514|gb|AAZ95954.1| chromosomal replication initiator protein, DnaA [Thiobacillus denitrificans ATCC 25259] Length = 457 Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 153/466 (32%), Positives = 246/466 (52%), Gaps = 27/466 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N +S + + R + + +++W + L F + V + P +F+ W++ ++ E I Sbjct: 10 NMDSFWDLCQERFRANLTQQQFSTWIKPLVFDDG-GDEVRILAPNHFVMDWVREKFAEHI 68 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 QE ++R + S AL A + + + + + Sbjct: 69 DSWAQEFYARPVAI-----SYALGKKPAPARAAPAAPTANPAEPAAPAAPAPAQ------ 117 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 G ++ F F F+ G +N++A AA IAE Y NPLF++ VGLGKTHLL Sbjct: 118 VGMRINPGFTFDNFVSGRANQLARAAALQIAENPGVAY-----NPLFVYGGVGLGKTHLL 172 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N + P R+ Y+ A ++ A + +LK ++DLLLIDD+QFL Sbjct: 173 QAIGNTVRQTNPAARISYIHANDYVDDVVKAYLNKQFDDLKRRYMSLDLLLIDDIQFLAK 232 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF ++ NSL+++ KQ+V D P E+ LD R++SR G++V + + EMR Sbjct: 233 KDRTQEEFFYVFNSLIENKKQIVITCDTFPKEISGLDDRLKSRFAWGLTVAVEPPELEMR 292 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTA 390 +IL LA ++ E + ++E V +A+ V ++ REL+GA +++ F PI T Sbjct: 293 VAIL---LAKARAE--SVTLDENVAFFIAKQVRSNVRELEGALKRVIAFSRFHEKPI-TM 346 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L L+ + ++ + IE+IQ+ VA Y I D+ S +R R + RPRQ+AM L+K Sbjct: 347 ELVKEALRDLIAS-TSRMVSIENIQKTVADFYKIKVADMFSKKRTRNLARPRQIAMALAK 405 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +T +S PEIG FG RDHTTV+HA RKV ++ ET+ + ++ +L Sbjct: 406 ELTNQSLPEIGESFGGRDHTTVIHACRKVAELRETEADIGRDYLVL 451 >gi|331700396|ref|YP_004397355.1| chromosomal replication initiator protein DnaA [Lactobacillus buchneri NRRL B-30929] gi|329127739|gb|AEB72292.1| Chromosomal replication initiator protein dnaA [Lactobacillus buchneri NRRL B-30929] Length = 449 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 150/469 (31%), Positives = 248/469 (52%), Gaps = 29/469 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +S++ +S + ++ Y +W + +K S + + LS+P+ + + K + Sbjct: 2 LDKDSLWQKLSEQFRSNTTDLTYDTWIKPVKPISFDGSTLTLSLPSELHRDYWKEQLAPN 61 Query: 93 ITKL-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + F I+ IL V + EK P++ N S+ S Sbjct: 62 LIEYAFVITKGNIEPKFILDSDVNKEAQEK-----------PVDNNASQDQ---DGDEFS 107 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ + F FI G N++A AA ++E Y NPLF + VGLGKTH Sbjct: 108 FSKENHLNPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLY-----NPLFFYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI N ++ P V Y+T+E F F +AI+ N + R++D+L++DD+QF Sbjct: 163 LMQAIGNKRLEDHPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRDVDILMVDDIQFF 222 Query: 272 -QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q + Q EF H N L ++ KQ+V +DR P E+ L R+ SR G+ V + D E Sbjct: 223 AQKEGTQEEFFHTFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +ILKN+ + L I + L ++A + ++ REL+GA + Q + PI Sbjct: 283 TRIAILKNKAKLDN-----LVIPNDTLSYIAGQIDSNVRELEGALSRVQAYSKLKDEPI- 336 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++ E L L + + +++ I DIQ VA +++IS NDL +R++++V PRQ+AMYL Sbjct: 337 TTDLVYEALRGLKLSQDNRQLSIVDIQNKVASYFHISINDLKGKKRMKSIVMPRQIAMYL 396 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 S+ MT S P+IG+ FG +DHTTV+HA K+ ++++ D L+KE+ +K Sbjct: 397 SREMTSNSLPKIGKEFGGKDHTTVIHACDKIAEIIKLDADLRKEIADIK 445 >gi|320547711|ref|ZP_08041996.1| DNA-directed DNA replication initiator protein [Streptococcus equinus ATCC 9812] gi|320447786|gb|EFW88544.1| DNA-directed DNA replication initiator protein [Streptococcus equinus ATCC 9812] Length = 451 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 131/360 (36%), Positives = 209/360 (58%), Gaps = 16/360 (4%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K++ P S L++++ F F++G NR A +A+ ++A+ Y NPLFI G Sbjct: 101 KKSNLPQVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTY-----NPLFIWGGPG 155 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL AI NA ++ P RV Y+TAE F+ F IR + LK+ RN+D+LLID Sbjct: 156 LGKTHLLNAIGNAVLQNNPKARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLID 215 Query: 267 DMQFLQGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 D+Q L K + Q EF + N+L D+ KQ+V +DR P L++L+ R+ +R + G+++ Sbjct: 216 DIQSLAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTIN 275 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +IL N+ +Q+ D ++ + ++A ++ R+L+GA + S Sbjct: 276 ITPPDFETRVAILTNK---TQEYD--FVFPQDTIEYLAGQFDSNVRDLEGALKDISLVAS 330 Query: 384 F--APILTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 A +T +IA E + G + + IE+IQ V K Y ++ ++ + +R + +V Sbjct: 331 IKKAKTITVDIAAEAIRARKQDGPKMTVIPIEEIQSQVGKFYGVTVKEIKATKRTQDIVL 390 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQVAMYL++ MT S P+IG+ FG RDH+TVLHA K++ M+ D L+ E+E +K I Sbjct: 391 ARQVAMYLTREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIAQDNNLRIEIETIKNKI 450 >gi|229824635|ref|ZP_04450704.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271] gi|229786006|gb|EEP22120.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271] Length = 461 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 134/381 (35%), Positives = 209/381 (54%), Gaps = 28/381 (7%) Query: 134 INTNISKSPIILGKQTISP-----VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 INT + ++P+ + + P S L+ + FS F+ G +N++A AA ++ + Sbjct: 97 INTQVVQTPVHISPLEMEPNEPSSYSRSQLNPNYTFSNFVIGEANKMAHAAALTVCDAPG 156 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 Y NP I+ VGLGKTHL+QAI N + RQP+ ++ Y T E F F +A+ N Sbjct: 157 ETY-----NPYLIYGGVGLGKTHLMQAIGNEILSRQPHAKIKYATTESFTNDFITALEKN 211 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + R ID+LLIDD+QFL K + EF H N L + KQ+V DR PS L Sbjct: 212 TIEEFRHMYRKIDVLLIDDIQFLSNKNKTREEFFHTFNELYNHGKQIVMTCDRLPSSLSG 271 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 L+ R+ SR G+ + + D+E R +IL+ + + D L ++A V T+ Sbjct: 272 LEDRLISRFAWGLQIDITPPDFETRIAILRKKASNEFSAD--------TLQYIASHVNTN 323 Query: 368 GRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGET--KKMRIEDIQRMVAKH 421 REL+GA ++ ++A I +T +A E LS L+N T K+ I++I V ++ Sbjct: 324 IRELEGALTRVT---AYATIHNREITTNLAAEALSSLLNGTPTTGDKLSIDEIVTQVGRY 380 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 YN+ ++L +R + +V PRQVAMYL + +T SFP+IG FG R+HTT++HA K+ Sbjct: 381 YNVEIDELKGKKRTKEIVHPRQVAMYLCRELTDVSFPKIGEAFGKRNHTTIIHAYEKIND 440 Query: 482 MLETDITLKKEVELLKRLISE 502 L+ + LK+E+ LK+ + + Sbjct: 441 ELQHNARLKQELSELKQKLGQ 461 >gi|327402012|ref|YP_004342850.1| chromosomal replication initiator protein DnaA [Fluviicola taffensis DSM 16823] gi|327317520|gb|AEA42012.1| chromosomal replication initiator protein DnaA [Fluviicola taffensis DSM 16823] Length = 476 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 149/486 (30%), Positives = 265/486 (54%), Gaps = 27/486 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N ++I+ +K+ + Y +WF+ + + +N++ + VP++F W++ Y+ Sbjct: 1 MSANHDAIWNSCLKVIKDNLPIQAYKTWFEPIVPVKLENNVLTIQVPSHFFYEWLEEHYI 60 Query: 91 ETITKLFQEEHSRIQGVE--ILVRSVALPS----VEKTASSPSITKLSPINT--NISKSP 142 + K+ ++E + +E I++ + A S V+ AS+ K +P+N NIS +P Sbjct: 61 TLLKKVIKKELGQEGHLEYSIVMENSASNSNPYTVKLPASNKKAVKNAPMNMPLNISDNP 120 Query: 143 I-----ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 I I G + ++ S L+ + F F+EG NR+A +A ++A + G T N Sbjct: 121 IKNPFIIPGLKKVN--VDSNLNPAYSFENFVEGDCNRLARSAGYAVA--NKPGGTA--FN 174 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PL I+ VGLGKTHL +I + PN V+Y+++E F +F A+R+ + Sbjct: 175 PLLIYGGVGLGKTHLAHSIGIGVKNQFPNKTVLYVSSEKFAHQFIDAVRNQTTNDFIHFY 234 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 + ID+L+IDD+QF GK Q F H+ N L + KQ++ +D+PP E++ ++ R+ SR Sbjct: 235 QMIDVLIIDDVQFFSGKEKTQDVFFHIFNHLHQNGKQIILTSDKPPVEMQGMEQRLLSRF 294 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+S L D E R +I++ ++ S E P+ EV+ ++A ++ T+ RE++GA Sbjct: 295 KWGLSADLSTPDLETRIAIMEKKMYGSGIELPR-----EVVEYLAYSINTNIREMEGAMT 349 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 L+ + S +T ++A +++ V +++ I+ IQ++V ++++ L S R Sbjct: 350 SLLAQASLNKKAITLDLAKQMIDKFVKN-TAREVSIDYIQKVVCDYFDLPIEMLKSKTRK 408 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R VV+ RQ++MY SK MT S IG G +DH TVLHA R V + ETD + +E Sbjct: 409 REVVQARQISMYFSKKMTKSSLASIGAHCGGKDHATVLHACRTVLNLSETDKQFRVYLED 468 Query: 496 LKRLIS 501 L++ ++ Sbjct: 469 LEKKLT 474 >gi|42525520|ref|NP_970618.1| chromosomal replication initiation protein [Treponema denticola ATCC 35405] gi|14194665|sp|O87546|DNAA_TREDE RecName: Full=Chromosomal replication initiator protein DnaA gi|3676692|gb|AAC62071.1| chromosomal replication initiator protein [Treponema denticola] gi|41815531|gb|AAS10499.1| chromosomal replication initiator protein DnaA [Treponema denticola ATCC 35405] Length = 469 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 237/467 (50%), Gaps = 24/467 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI-TKLFQEEHS 102 ++ K ++ +++ WF K+ N V+LSVP+ F + + + Y I KLF+ Sbjct: 15 NQFKEELAFSIFSMWFLPSKYEKSTENTVYLSVPSKFFRDQMIHNYKNGIEKKLFE---- 70 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS-----P 157 + G +I + + P+ + S + + +K K+ G Sbjct: 71 -LSGKKISIDFIIKPNTSEDLSKAENEGGNDKKEDAAKPSSAESKKKSVKTEGGRGQHPD 129 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F F+ G +N + AA +++ Y NP I+ VGLGKTHL+QAI Sbjct: 130 LRPEYNFEDFVVGPNNNFGVNAAIAVSTNPGSAY-----NPFLIYGGVGLGKTHLMQAIG 184 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N I L+V+Y+TAE F F ++ K R D+LLIDD+ F QGK+ Sbjct: 185 N-KIWDTTKLKVIYVTAENFTNEFVECVQKKMMPAFKSKYRKADVLLIDDIHFFQGKVET 243 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E H N L + KQ+V DRPP+EL++L R++SR + G++V L YE+R++IL Sbjct: 244 QEELFHTFNELYEKNKQIVFTCDRPPAELKNLSQRLKSRFERGLNVDLQTPAYEIRYAIL 303 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADE 395 ++ E I E + VA+ V+++ R+L+ A +L+ + + A Sbjct: 304 LKKM-----EKHSTKIPNEFIDMVAKNVSSNVRDLEAALTKLIAYTELTKKTMDEATAKN 358 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 LL + + + + I+ IQR VA +++IS +D+ S +R ++ PRQ+AM+L + MT Sbjct: 359 LLRDIFGSTRQRNVTIDLIQRTVADYFSISISDIKSKKRTKSFSFPRQIAMFLCREMTEC 418 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S E+G FG RDHTT+LH K+E+ + D +L+K + L+ I E Sbjct: 419 STTELGNDFGGRDHTTILHGCNKIEEQIAADPSLEKIIHELRNTIKE 465 >gi|223935395|ref|ZP_03627312.1| chromosomal replication initiator protein DnaA [bacterium Ellin514] gi|223895805|gb|EEF62249.1| chromosomal replication initiator protein DnaA [bacterium Ellin514] Length = 462 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 152/474 (32%), Positives = 253/474 (53%), Gaps = 32/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ E I+T +L+ + D + WF L+ ++ + + L V +F + W+K+ Y+ Sbjct: 11 MQISAEHIWTAAQEKLRAMLNGDTFNLWFAPLRPQAIHGDCIVLEVANDFCEVWLKDNYI 70 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + ++ R V+ +V + +TAS+ +P +I + ++ Sbjct: 71 GLLQEVLTITSKRPLQVKFVVAT-------QTAST------TPAGLDIPEKVKVVEATAP 117 Query: 151 SPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 G + + + F TF+ G +N A AAQ++A+ Y NPLF++ VGLGK Sbjct: 118 ERSSGEAAFNPKNTFETFVVGGNNNFAHAAAQAVAQAPGKSY-----NPLFLYGGVGLGK 172 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + + + RV Y+++E F + AI++N + R D+LLIDD+Q Sbjct: 173 THLLHAIGHHVLSHKKGARVAYVSSEKFTNEYIDAIQNNQIAKFRKKYRQTDVLLIDDIQ 232 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK IQ EF H N+L ++ KQ+V DRP SE+++L+ R+ SR + G+ L D Sbjct: 233 FLAGKERIQEEFFHTFNALHEAHKQIVLTCDRPASEIQNLEHRLVSRFEWGLVTDLQPPD 292 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + A E P E++L +A + + R L+GA L+ S+A + Sbjct: 293 IETRMAILRKKAASMGVELP-----EDILNFLANRIRANIRRLEGA---LIRVASYASLT 344 Query: 388 ---LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 LT E+ + LL +++ + IE IQ+ VA+H++I D+ S RR + PRQ+ Sbjct: 345 GKKLTIEVVEGLLREVLHEEGRYSINIETIQKKVAEHFDIRLADMTSKRRPENIAFPRQI 404 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 AM+LS+ +T S IG FG RDH TVLHA R V+ +E D ++++ V L++ Sbjct: 405 AMFLSRQLTEGSLNSIGEAFGGRDHGTVLHACRLVKDRMEVDPSVRQVVSYLEK 458 >gi|257456142|ref|ZP_05621339.1| chromosomal replication initiator protein DnaA [Treponema vincentii ATCC 35580] gi|257446228|gb|EEV21274.1| chromosomal replication initiator protein DnaA [Treponema vincentii ATCC 35580] Length = 464 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 144/460 (31%), Positives = 245/460 (53%), Gaps = 18/460 (3%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +LK+++G + WF R+ + +++ LSVP+ F + ++ RY I K E Sbjct: 16 QLKDEIGEQEISMWFSRIVYERASDSVIVLSVPSGFYRDNVRQRYEILIEKKLLELLGSR 75 Query: 105 QGVEILVRSVALPSVEKTASSPSITKL--SPINTNISKSPIILGKQTISPVFGSPLDSRF 162 +E +++ + + + ++ +T SP + S+ + + ++ P+ L+ R+ Sbjct: 76 ISIEFEIKAPQIMNTQPVSTKNPLTSATSSPAAFHASQKSVPVEEKKKHPL----LNERY 131 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ + N + AA ++++ Y NPL I+ VGLGKTHL+QAI NA + Sbjct: 132 TFDKFVIDADNPLPANAAIAVSKNPGTAY-----NPLLIYGGVGLGKTHLMQAIGNA-LY 185 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFC 281 + NL+++Y AE F + + + N K+ RN D+LL+DD+ FL+ K Q E Sbjct: 186 QNTNLKILYAPAETFTNEYIAHVNKNKMHEFKNKYRNADVLLLDDIHFLEKKEGTQEELF 245 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L +S KQ+V DRP EL++L R+RSR G+S+ L + YE R +IL +L Sbjct: 246 HTFNALYESNKQIVFTCDRPVEELKNLTDRLRSRFTRGLSIDLKIPSYETRCAILFKKL- 304 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 +D +I +EV+ +A+ V+++ R+L+ A +L +T E A LL Sbjct: 305 ----QDEHFSIPDEVVHLIAKNVSSNVRDLESALTKLEAYSELTGPITLENAQRLLQDTF 360 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + + I+ I ++VA ++ IS DL +R + + PRQVAMYL++ MT S EIG Sbjct: 361 GSPRQHNISIDTILKIVADYFGISYIDLKGKKRTKNISFPRQVAMYLAREMTEFSTTEIG 420 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDHTT++H +K+E + +L+ + LK+ I+ Sbjct: 421 MELGGRDHTTIMHGHQKIETQTAIEPSLEVTIAELKKRIT 460 >gi|126663416|ref|ZP_01734413.1| chromosomal replication initiator protein [Flavobacteria bacterium BAL38] gi|126624364|gb|EAZ95055.1| chromosomal replication initiator protein [Flavobacteria bacterium BAL38] Length = 475 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 148/484 (30%), Positives = 259/484 (53%), Gaps = 31/484 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +S++ S +K+ + + +WF+ ++ + N + + VP+ F W++ Y++ + Sbjct: 5 AQSVWNNCLSFIKDNIQDQAFKTWFEPIQSVELNDNALSIQVPSKFFYEWLEEHYVKLLK 64 Query: 95 KLFQEEHSRIQGVEILVR-------------SVALPSVEKTASSPSITKLSPINTNIS-K 140 +E QG ++L + + +PS +TA P + N N K Sbjct: 65 VALTKELG--QGAKLLYKIKMENTYGNKLPFTEQIPSYNRTAVKPQEVDVPIANKNPELK 122 Query: 141 SPIIL-GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P ++ G + + S L++ + F F+EG SNR+A +A ++A + G T+ NPL Sbjct: 123 NPFVIPGIRNLK--IESQLNANYSFDNFLEGDSNRLARSAGMAVA--NKPGGTS--FNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEIFTQQYIDSVKKNTRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SILKN L E P +E++ +VA+ + ++ REL+GA L Sbjct: 297 GLSAELHQPDYETRISILKNILFRDGVEIP-----DEIVEYVAKNIKSNVRELEGAIISL 351 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF + E+A +++ V + +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAQSSFNKREVNLELAKQVVEKFVKNVK-REISIDYIQKIVSDYFQLDIETLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ+AM+ +K T S IG + GDRDH TVLHA + V+ ++ TD +K V+ + Sbjct: 411 VVQARQLAMFFAKKFTKASLANIGSQIGDRDHATVLHACKTVDNLVTTDKQFRKFVDDIN 470 Query: 498 RLIS 501 + +S Sbjct: 471 KKLS 474 >gi|163788605|ref|ZP_02183050.1| chromosomal replication initiator protein [Flavobacteriales bacterium ALC-1] gi|159875842|gb|EDP69901.1| chromosomal replication initiator protein [Flavobacteriales bacterium ALC-1] Length = 475 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 152/485 (31%), Positives = 258/485 (53%), Gaps = 28/485 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ +S+++ + +K+ + P Y +WF+ ++ + N + + VP+ F W++ Y+ Sbjct: 1 MEITAQSVWSNCLAFIKDNIQPQAYKTWFEPIEAVKLSGNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----SVALPSVEKTASSP-SITKLSPINTNIS-KSP- 142 + + +E + +++ P EK SS S K ++ + KSP Sbjct: 61 KILKVALNKELGEDAKLVYVIKMENTYGNKQPFTEKIPSSNRSAVKSQDVDVPFNNKSPE 120 Query: 143 -----IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 +I G + + S L+ + F F+EG SNR+A A IA + G T+ N Sbjct: 121 LKNPFVIPGIRNVK--IESQLNPSYSFENFLEGDSNRLARNAG--IAVANKPGGTS--FN 174 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PL I VGLGKTHL AI + P V+Y++AE F ++ +++ N + Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIDSVKKNNRNDFIHFY 234 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR Sbjct: 235 QIIDVLIIDDVQFLSGKTGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+S L D+E R SILKN+L E P +E++ +VA+ + T+ REL+GA Sbjct: 295 KWGLSAELQTPDFETRVSILKNKLYRDGVEMP-----DEIVEYVAKHIKTNVRELEGAII 349 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 L+ + SF +T +A +++ V + +++ I+ IQ++V+ ++ + N L S R Sbjct: 350 SLIAQSSFNKKEITINLAKDIVEKFVKNTK-REVSIDYIQKVVSDYFQMDVNTLQSKTRK 408 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE- 494 R +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K VE Sbjct: 409 RHIVQARQLAMFFAKKYTKASLASIGSQIGQRDHATVLHACKTVDNLSSTDKQFRKYVED 468 Query: 495 LLKRL 499 L K+L Sbjct: 469 LAKKL 473 >gi|145588190|ref|YP_001154787.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046596|gb|ABP33223.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 475 Score = 230 bits (586), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 150/467 (32%), Positives = 244/467 (52%), Gaps = 27/467 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETITKLFQEEH 101 S L ++ P + +W Q L S + L+V P F WIK + + +L E Sbjct: 24 SALSRELSPQQFKTWIQPLTLVSFDESDCSLTVGAPNRFKLDWIKKTFADRFQELASEYF 83 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSIT-----KLSPINTNISKSPII-LGKQTISPVFG 155 S + ++ +VE +A +PS +S + SPII + +Q+ Sbjct: 84 SGPININFVL------AVEGSAPTPSNVPAPEIDMSEPQSQDESSPIISVEEQSFEIEDH 137 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F TF+ G +N++A A+ +A Y NP+F++ VGLGKTHL+ A Sbjct: 138 SKLNPNLTFETFVTGKANQLARAASIQVAHNPGTSY-----NPMFLYGGVGLGKTHLIHA 192 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N +K +PN R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 193 IGNHLLKEKPNARIRYIHAEQYVSDVVRAYQQKAFDRFKRYYHSLDLLLIDDIQFFSGKS 252 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +LL + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 253 RTQEEFFYAFEALLSNKSQVIITSDTYPKEMAGIDDRLISRFDSGLTVAIEPPELEMRVA 312 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIA 393 IL + A + + E+V VA+ + ++ REL+GA + L F +T ++A Sbjct: 313 ILMKKAA-----SEGIPMTEDVAFFVAKHLRSNVRELEGALRKILAFVRFHGREVTIDVA 367 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L L++ + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AM+++K +T Sbjct: 368 RIALKDLLSI-QNRQISVENIQKAVADFYSIKVADMYSKKRPANIARPRQIAMFMAKELT 426 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ + D L E+ ++++ + Sbjct: 427 QKSLPEIGELFGGRDHTTVLHAVRKIGEERSHDSQLNHEIHVIEQTL 473 >gi|313904725|ref|ZP_07838099.1| chromosomal replication initiator protein DnaA [Eubacterium cellulosolvens 6] gi|313470518|gb|EFR65846.1| chromosomal replication initiator protein DnaA [Eubacterium cellulosolvens 6] Length = 446 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 143/461 (31%), Positives = 252/461 (54%), Gaps = 41/461 (8%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK-AWIKNRYLETITKLFQEEHSRIQ 105 ++++G + +W + L+ H V N V + VPT + ++ +Y I E + Sbjct: 18 EHELGEISFKTWIKPLRVHRVDGNDVTILVPTEQVGLDYVSKKYKLPIKAAIGE----LT 73 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 G + + V +K I S I+ G L+ R+ F Sbjct: 74 GKDCEIYFVLPQDADKEIKEKQIKNES----------ILAG-----------LNPRYTFD 112 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ GS+N+ A A+ ++AE Y NPLF++ VGLGKTHL+ +IA+ ++ P Sbjct: 113 TFVVGSNNKFAHAASLAVAESPGKIY-----NPLFLYGGVGLGKTHLMNSIAHFILENHP 167 Query: 226 NLRVVYLTAEYFMWRFASAIRD--NCALN-LKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 +R+VY+T+E F AIR+ N A+N ++ RNID+LLIDD+QF+ GK Q EF Sbjct: 168 GIRIVYVTSEEFTNEVIDAIRNGSNTAINKFREKYRNIDVLLIDDIQFIIGKESTQEEFF 227 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L + KQ++ ++DRPP +++ L+ RIRSR + G+ + + DYE R +IL+ + Sbjct: 228 HTFNALHGAGKQIIISSDRPPKDMDILEDRIRSRFEWGLMADIQMPDYETRMAILRKKQE 287 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHL 400 I +++++VL ++A V ++ REL+G+ N+++ F + + E+A + L + Sbjct: 288 ID-----GTSVDDDVLEYIASNVKSNIRELEGSLNKVIAFSNLEQKEIDIELAQKALRDI 342 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 ++ E K + + I +VA+H+NI+ +D+ SN R R PRQ+ M+L + MT + +I Sbjct: 343 ISPDEPKVITADYIINVVAEHFNITGDDIRSNIRARKYSYPRQIVMFLCRQMTTNNLQQI 402 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++HTT++H ++K+E+ ++ ++LLK+ I+ Sbjct: 403 AEAICVQNHTTIMHGIKKIEQDYASNKETHDTIDLLKKKIN 443 >gi|195973852|gb|ACG63491.1| chromosomal replication initiator protein DnaA [Francisella noatunensis subsp. orientalis] gi|225624833|gb|ACN96551.1| DnaA [Francisella noatunensis subsp. orientalis] Length = 434 Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 208/367 (56%), Gaps = 29/367 (7%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 PS +KTAS ++ +I K FG PL ++VF +F+ G +N++A Sbjct: 91 PSSKKTASQELF--------GFDEAMLITDKDDQEYSFGLPLKEKYVFDSFVVGDANKIA 142 Query: 177 LTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 AA ++ +L NPLFI+ GLGKTHL+QAI N + + PN R++Y +E Sbjct: 143 RAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNARIIYTNSE 196 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ + ++IR + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ+ Sbjct: 197 QFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQI 256 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +D+ P+E+E L+ R+ SR G++V + + D E R +IL + + D + Sbjct: 257 ILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMLDLETRIAIL-----LKKAHDLGQKLPN 311 Query: 355 EVLMHVARTVTTSGRELDGAFNQLV----FRHSFAPILTAEIADELLSHLVNTGETKKMR 410 E +A V T+ REL+GA N+++ F H P T E+A L ++ E KK++ Sbjct: 312 ETAAFIAENVRTNVRELEGALNRVLTTSKFNHK-DP--TIEVAQACLRDVIKIQE-KKVK 367 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHT Sbjct: 368 IDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHT 427 Query: 471 TVLHAVR 477 TV+HAV+ Sbjct: 428 TVMHAVK 434 >gi|329116547|ref|ZP_08245264.1| chromosomal replication initiator protein DnaA [Streptococcus parauberis NCFD 2020] gi|326906952|gb|EGE53866.1| chromosomal replication initiator protein DnaA [Streptococcus parauberis NCFD 2020] Length = 453 Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 148/426 (34%), Positives = 234/426 (54%), Gaps = 32/426 (7%) Query: 89 YLETITKLFQEEHSR----IQGVEILVRSVALPSV-EKTASSPSITKLSPINTNISKSPI 143 YLE + +LF E++ + G E+ + +++ V E + + IT+L T S Sbjct: 45 YLERMKELFWEKNLKDVILTAGFEVYNQQISVQYVFEDSLENEIITELPGRMTPSS---- 100 Query: 144 ILGKQTIS--PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 QTIS P L+ ++ F FI+G NR A+ A+ ++A Y NPLFI Sbjct: 101 ----QTISRLPAINPDLNPKYGFDNFIQGDENRWAVAASIAVANTPGSTY-----NPLFI 151 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 GLGKTHLL AI N+ ++ P+ RV Y++AE F+ F + IR + LK+ RN+D Sbjct: 152 WGGPGLGKTHLLNAIGNSVLQDNPHARVKYISAENFINEFVTHIRLDKMDELKEVFRNLD 211 Query: 262 LLLIDDMQFLQGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 LLLIDD+Q L K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + Sbjct: 212 LLLIDDIQSLAKKTLAVTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEERLVTRFKW 271 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + D+E R +IL N++ +D + + ++A +S R+L+GA + Sbjct: 272 GLTVNITPPDFETRVAILTNKI-----QDYSFTFPQSTIEYLAGQFDSSVRDLEGALKDI 326 Query: 379 VFRHSFAPI--LTAEIADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRR 434 +F I ++ E+A E + K + IE IQ V K Y++S ++ + +R Sbjct: 327 SLVANFKQIDVISVELAAEAIRARKQDSPNKIRVIPIETIQEQVGKFYDVSVKEIKATKR 386 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + +V RQVAMYL++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E Sbjct: 387 TQDIVLARQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIVDDESLRIEIE 446 Query: 495 LLKRLI 500 +K I Sbjct: 447 TIKNKI 452 >gi|290968154|ref|ZP_06559699.1| chromosomal replication initiator protein DnaA [Megasphaera genomosp. type_1 str. 28L] gi|290781829|gb|EFD94412.1| chromosomal replication initiator protein DnaA [Megasphaera genomosp. type_1 str. 28L] Length = 498 Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 149/502 (29%), Positives = 263/502 (52%), Gaps = 49/502 (9%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQ-RLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 E++ S++ + ++LK + P +Y +W + L +S +N + L FL+ ++ YL Sbjct: 4 EMDVTSLWIGMLAQLKQALPPTIYNTWIEPSLLPYSYENNQLILDTAQQFLRTYLSKNYL 63 Query: 91 ETITKLFQEEHSRIQGVEILVRSVA-----LPS---------VEKTASSPSITKLSPIN- 135 E + ++ + G ++ + +P+ ++ T S+ K P+ Sbjct: 64 EDL----KQAALAVTGTPTEIKLICSAKEPIPTEPAVAETIHIKDTGEPQSVAKKEPLQP 119 Query: 136 -------TNISKSPIILGKQTIS-PVFGSP-----LDSRFVFSTFIEGSSNRVALTAAQS 182 I +P +L K+ S P+ + LD+ + F FI G+SNR+A+ A + Sbjct: 120 LSLRDTANTIDSAPDLLIKEAKSLPITENTTPENQLDASYTFDNFIVGNSNRLAVAKAFA 179 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ NPL+I+ + GLGKTHL+ AI + +++ P++R+ +T+E F+ F Sbjct: 180 VADAPGRK----EFNPLYIYGASGLGKTHLMHAIGHRILEKFPHMRLRSITSEDFVNEFI 235 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFL---QGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 I+D + + RNID+LL+DD+QFL + EF H N L KQ+V +D Sbjct: 236 KCIQDKNTESFRRQYRNIDVLLVDDIQFLGRGDKDSSKEEFFHTFNKLQQDKKQIVLTSD 295 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 RPP ++E ++ R+RSR Q G + D E R +ILK + E L+I+ E + + Sbjct: 296 RPPLDIERMEERLRSRFQSGSVAWIDPPDLETRTAILK-----TWAEKIHLSIDNESINY 350 Query: 360 VARTVTTSGRELDGAFN--QLVFRHSFAPILTAEIADELLSHLVNTGETKK-MRIEDIQR 416 +A V+ + REL GAFN Q++ AP+ T + + +LVN E KK + ++I Sbjct: 351 IAANVSENIRELSGAFNNIQVLASAEKAPV-TLSMTQRAIRYLVNNQEEKKYVSTDEIIN 409 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 V + Y+++ D++ ++ + + PRQ+AMYL + +T ++P IG FG RDHTTV+HA Sbjct: 410 TVCQFYSVTYKDIMGKKKTKDIALPRQIAMYLCRELTEHTYPHIGTVFGGRDHTTVMHAC 469 Query: 477 RKVEKMLETDITLKKEVELLKR 498 K+ + + + K+ ++ LK+ Sbjct: 470 SKISQKMNENDHFKESIDKLKQ 491 >gi|328956383|ref|YP_004373769.1| chromosomal replication initiation protein [Carnobacterium sp. 17-4] gi|328672707|gb|AEB28753.1| chromosomal replication initiation protein [Carnobacterium sp. 17-4] Length = 445 Score = 229 bits (584), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 148/475 (31%), Positives = 252/475 (53%), Gaps = 39/475 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ++++ + + K + Y +W + + N + + VP++ K + +N I Sbjct: 3 DLQTLWIFLKEKFKESLSKVSYDTWIESASPIRITDNNIIIEVPSSLHKEYWENNLATRI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS--PIILGKQTIS 151 + E SR ++++ E+ AS+ +N N+ L K+ I Sbjct: 63 VENIYEYSSREISPLFIIKN------EQEASNL-------VNKNLRNEVPKKTLFKKDIQ 109 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L++++ F TF+ G N++A AA +AE Y NPLF + VGLGKTH Sbjct: 110 ------LNTKYTFDTFVIGKGNQMAHAAALVVAEEPGTIY-----NPLFFYGGVGLGKTH 158 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + + P+ RV Y+++E F F ++I++ ++ R++DLLL+DD+QF Sbjct: 159 LMHAIGHQMLLLNPDARVKYVSSETFANDFINSIQNKTQEKFRNEYRSVDLLLVDDIQFF 218 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+L D KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 219 ADKEGTQEEFFHTFNALYDDRKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLE 278 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--- 387 R +IL+ + + E P + L ++A + ++ REL+GA LV ++A I Sbjct: 279 TRIAILRKKANAERLEIPG-----DTLSYIAGQIDSNIRELEGA---LVRVQAYAAIESR 330 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +A + L ++ + + + I DIQ V+K+Y +S DL +R++++V PRQ+AM Sbjct: 331 DITTSLAADALKSMLPSAKPTTLTILDIQNAVSKYYQLSIADLKGKKRIKSIVLPRQIAM 390 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YLS+ +T S P+IG FG +DHTTV+HA K+ +L TD LK+E+ +K+ ++ Sbjct: 391 YLSRELTSNSLPKIGAEFGGKDHTTVIHAYEKIVHVLSTDDQLKQEITDIKKKLT 445 >gi|33240018|ref|NP_874960.1| chromosomal replication initiation protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|37154736|sp|Q51896|DNAA_PROMA RecName: Full=Chromosomal replication initiator protein DnaA gi|33237544|gb|AAP99612.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 461 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 254/469 (54%), Gaps = 22/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + V S LK + Y +W + +F + + L P +F AW+KN Y +TI + Sbjct: 3 EASWEKVQSSLKQNLSKPSYETWIRPTEFSGFKNGELTLIAPNSFSSAWLKNNYSQTIQE 62 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL--SPINTNISKSPIILGKQTISPV 153 +E V + V++ A S E +S+P L SP + + S S + L K+T+ P+ Sbjct: 63 TAEEIFGEPVTVHVKVKANAESSDEHYSSAPITPPLEASPGSVDSSGSSLRLSKKTL-PL 121 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI VGLGKTHL+ Sbjct: 122 ----LNLRYVFNRFVVGPNSRMAHAAAMAVAESPGREF-----NPLFICGGVGLGKTHLM 172 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI + ++ P +V Y++ E F AIR + +D R DL+L+DD+QF++G Sbjct: 173 QAIGHYRLEIDPGAKVSYVSTETFTNDLILAIRQDRMQAFRDRYRAADLILVDDIQFIEG 232 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L D+ Q+V A+DRPPS++ L R+ SR G+ + D E R Sbjct: 233 KEYTQEEFFHTFNALHDAGSQIVLASDRPPSQIPRLQERLMSRFSMGLIADVQAPDLETR 292 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +IL+ + E ++ + +++ +A T++ REL+GA + + +FA I + Sbjct: 293 MAILQKK-----AEQERVGLPRDLIQFIAGRFTSNIRELEGALTRAI---AFASITGLPM 344 Query: 393 A-DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 D + L G+ ++ + + VA+ + ++ +++ S R R V + RQV MYL + Sbjct: 345 TVDSIAPMLDPNGQGVEVTPKQVLDKVAEVFKVTPDEMRSASRRRPVSQARQVGMYLMRQ 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IG FG +DHTTV++A+ +VEK L +D + +V+ ++ L+ Sbjct: 405 GTNLSLPRIGDTFGGKDHTTVMYAIEQVEKKLSSDPQIASQVQKIRDLL 453 >gi|305667262|ref|YP_003863549.1| chromosomal replication initiation protein [Maribacter sp. HTCC2170] gi|88709309|gb|EAR01542.1| chromosomal replication initiation protein [Maribacter sp. HTCC2170] Length = 474 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 152/486 (31%), Positives = 258/486 (53%), Gaps = 30/486 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V S++ + +K+ + P + +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MSVTANSVWNNCLAFIKDNIQPQAFKTWFEPIKPVKLSENALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVAL-----PSVEKTASSPSITKLSPINTNI---SKSP 142 + + +E + ++R P EK SS + + P ++ SK+P Sbjct: 61 KLLKVALTKELGETAKLVYIIRMENTYGNREPFTEKIPSS-NRGNMGPQEMDVPIKSKNP 119 Query: 143 ------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 +I G + I S L+ + F F+EG SNR+A +A ++A + G T+ Sbjct: 120 ELRNPFVIPGIRNIK--IESQLNPNYNFDNFLEGDSNRLARSAGMAVA--NKPGGTS--F 173 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL I VGLGKTHL AI + P V+Y++AE F ++ +++ N + Sbjct: 174 NPLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHF 233 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR Sbjct: 234 YQLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSR 293 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+S L DYE R SILKN+L E P +++ +VA+ + T+ REL+GA Sbjct: 294 FKWGLSAELQNPDYETRISILKNKLYRDGVEMP-----NDIVDYVAKHIKTNIRELEGAI 348 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 L+ + SF +T E+A +++ V + +++ I+ IQ++V+ ++ + L S R Sbjct: 349 ISLIAQSSFNKKEVTIELAQQVVEKFVKNTK-REVSIDYIQKVVSDYFEMDVATLQSKTR 407 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + ETD +K +E Sbjct: 408 KRHIVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLAETDKQFRKYIE 467 Query: 495 -LLKRL 499 L K+L Sbjct: 468 DLTKKL 473 >gi|146297771|ref|YP_001192362.1| chromosomal replication initiator protein DnaA [Flavobacterium johnsoniae UW101] gi|146152189|gb|ABQ03043.1| chromosomal replication initiator protein DnaA [Flavobacterium johnsoniae UW101] Length = 475 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 150/477 (31%), Positives = 251/477 (52%), Gaps = 31/477 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +S++ S +K+ + Y +WF+ +K + N +++ VP+ F W++ Y++ + Sbjct: 5 AQSVWENCLSFIKDNIQDQAYKTWFEPIKSVELTDNALYIQVPSKFFYEWLEEHYVKLLK 64 Query: 95 KLFQEEHSRIQGVEILVR-------------SVALPSVEKTASSPSITKLSPINTNIS-K 140 +E + ++L + + LPS + P N N K Sbjct: 65 VALTKELGK--NAKLLYKIKMENTYGNKQPFTEQLPSSNRVPMKPQEVDAPFKNLNPELK 122 Query: 141 SPIIL-GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P ++ G + + S L+ + F F+EG SNR+A +A ++A + G T+ NPL Sbjct: 123 NPFVIPGIRNLK--IESQLNPNYSFDNFLEGDSNRLARSAGMAVA--NKPGGTS--FNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEVKDKYPEKTVLYISAEIFTQQYIDSVKKNNRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKSGTQDVFFHIFNYLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SILKN L + P E++L +VAR + ++ REL+GA L Sbjct: 297 GLSAELHQPDYETRISILKNILYRDGVDMP-----EDILEYVARNIKSNVRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF +T E+A ++ V + +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAQSSFNKKEVTIELAKSVVEKFVKNVK-REISIDYIQKIVSDYFQLDIETLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 VV+ RQ+AM+ +K T S IG + GDRDH TVLHA + V+ ++ TD KK VE Sbjct: 411 VVQARQLAMFFAKKFTKASLANIGSQIGDRDHATVLHACKTVDNLVSTDKQFKKFVE 467 >gi|222152202|ref|YP_002561377.1| chromosomal replication initiation protein [Streptococcus uberis 0140J] gi|254777917|sp|B9DSN7|DNAA_STRU0 RecName: Full=Chromosomal replication initiator protein DnaA gi|222113013|emb|CAR40315.1| chromosomal replication initiator protein [Streptococcus uberis 0140J] Length = 451 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 211/372 (56%), Gaps = 22/372 (5%) Query: 139 SKSPIILGKQTIS--PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 S S I +QTI+ P S L+ ++ F FI+G NR A+ A+ ++A Y Sbjct: 91 STSNHIFSRQTINSLPAITSDLNPKYSFDNFIQGDENRWAVAASLAVANTPGTTY----- 145 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI GLGKTHLL AI NA + P RV Y+TAE F+ F IR + LK+ Sbjct: 146 NPLFIWGGPGLGKTHLLNAIGNAVLLDNPKARVKYITAENFINEFVIHIRLDTMDELKEK 205 Query: 257 LRNIDLLLIDDMQFLQGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 RN+DLLLIDD+Q L K + Q EF + N+L ++ KQ+V +DR P L L+ R+ Sbjct: 206 FRNLDLLLIDDIQSLAKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEQRLV 265 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +R + G++V + D+E R +IL N++ ++ ++ + ++A ++ R+L+G Sbjct: 266 TRFKWGLTVNITPPDFETRVAILTNKI-----QEYNFTFPQDTIEYLAGQFDSNVRDLEG 320 Query: 374 AFNQLVFRHSFAPI--LTAEIADELLSHLVNTGETKKMRI---EDIQRMVAKHYNISRND 428 A + +F I +T +IA E + +T KM I E+IQ V K Y ++ + Sbjct: 321 ALKDISLVANFKEIDKITVDIAAEAIR--ARKQDTPKMTIIPIEEIQTQVGKFYGVTVKE 378 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + + +R + +V RQVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D + Sbjct: 379 IKATKRTQNIVLARQVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIIEDES 438 Query: 489 LKKEVELLKRLI 500 L+ E+E +K I Sbjct: 439 LRIEIETIKNKI 450 >gi|332139411|ref|YP_004425149.1| Chromosomal replication initiator protein dnaA [Alteromonas macleodii str. 'Deep ecotype'] gi|327549433|gb|AEA96151.1| Chromosomal replication initiator protein dnaA [Alteromonas macleodii str. 'Deep ecotype'] Length = 554 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 207/349 (59%), Gaps = 15/349 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F F+EG SN++A AA +A Y NPLFI+ GLGKTHLL A Sbjct: 217 SNINPTYQFDNFVEGKSNQLARAAATQVANNPGGSY-----NPLFIYGGTGLGKTHLLHA 271 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N + + ++VY+ +E F+ A+++N + K R++D LLIDD+QF K Sbjct: 272 VGNGIVANNGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKE 331 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E++ ++ R++SR G+++ + + E R + Sbjct: 332 RSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVA 391 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL + A + ++++ EV +A+ + ++ REL+GA N+++ +F PI T + Sbjct: 392 ILMRKAA-----ENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDF 445 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + +++IQ+ VA +Y I D+LS RR R+V RPRQVAM L+K + Sbjct: 446 VREALRDLLALQE-KLVTVDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKEL 504 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PE+G FG RDHTTVLHA RK+E++ E +K++ + L R +S Sbjct: 505 TNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIKEDYKNLIRTLS 553 >gi|325475359|gb|EGC78544.1| chromosomal replication initiator protein dnaA [Treponema denticola F0402] Length = 469 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 237/467 (50%), Gaps = 24/467 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI-TKLFQEEHS 102 ++ K ++ +++ WF K+ N V+LSVP+ F + + + Y I KLF+ Sbjct: 15 NQFKEELAFSIFSMWFLPSKYEKSTENTVYLSVPSKFFRDQMIHNYKNGIEKKLFE---- 70 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS-----P 157 + G +I + + P+ + S + + +K K+ G Sbjct: 71 -LSGKKISIDFIIKPNTSEDLSKAENEGGNDKKEDAAKPSSAESKKKSVKTEGGRGQHPD 129 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F F+ G +N + AA +++ Y NP I+ VGLGKTHL+QAI Sbjct: 130 LRPEYNFEDFVVGPNNNFGVNAAIAVSTNPGSAY-----NPFLIYGGVGLGKTHLMQAIG 184 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N I L+V+Y+TAE F F ++ K R D+LLIDD+ F QGK+ Sbjct: 185 N-KIWDTTKLKVIYVTAENFTNEFVECVQKKMMPAFKSKYRKADVLLIDDIHFFQGKVET 243 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E H N L + KQ+V DRPP+EL++L R++SR + G++V L YE+R++IL Sbjct: 244 QEELFHTFNELYEKNKQIVFTCDRPPAELKNLSQRLKSRFERGLNVDLQTPAYEIRYAIL 303 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADE 395 ++ E I E + VA+ V+++ R+L+ A +L+ + + A Sbjct: 304 LKKM-----EKHSTKIPNEFIDMVAKNVSSNVRDLEAALTKLIAYTELTKKTMDEATAKN 358 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 LL + + + + I+ IQ+ VA +++IS +D+ S +R ++ PRQ+AM+L + MT Sbjct: 359 LLRDIFGSTRQRNVTIDLIQKTVADYFSISISDIKSKKRTKSFSFPRQIAMFLCREMTEC 418 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S E+G FG RDHTT+LH K+E+ + D +L+K + L+ I E Sbjct: 419 STTELGNDFGGRDHTTILHGCNKIEEQIAADPSLEKIIHELRNTIKE 465 >gi|239993750|ref|ZP_04714274.1| Chromosomal replication initiator protein dnaA [Alteromonas macleodii ATCC 27126] Length = 551 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 207/349 (59%), Gaps = 15/349 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F F+EG SN++A AA +A Y NPLFI+ GLGKTHLL A Sbjct: 214 SNINPTYQFDNFVEGKSNQLARAAATQVANNPGGSY-----NPLFIYGGTGLGKTHLLHA 268 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N + + ++VY+ +E F+ A+++N + K R++D LLIDD+QF K Sbjct: 269 VGNGIVANNGDAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKE 328 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E++ ++ R++SR G+++ + + E R + Sbjct: 329 RSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVA 388 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL + A + ++++ EV +A+ + ++ REL+GA N+++ +F PI T + Sbjct: 389 ILMRKAA-----ENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDF 442 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + +++IQ+ VA +Y I D+LS RR R+V RPRQVAM L+K + Sbjct: 443 VREALRDLLALQE-KLVTVDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKEL 501 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PE+G FG RDHTTVLHA RK+E++ E +K++ + L R +S Sbjct: 502 TNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIKEDYKNLIRTLS 550 >gi|1353854|gb|AAC15822.1| DnaA [Prochlorococcus marinus] Length = 461 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 153/469 (32%), Positives = 254/469 (54%), Gaps = 22/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + V S LK + Y +W + +F + + L P +F AW+KN Y +TI + Sbjct: 3 EASWEKVQSSLKQNLSKPSYETWIRPTEFSGFKNGELTLIAPNSFSSAWLKNNYSQTIQE 62 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL--SPINTNISKSPIILGKQTISPV 153 +E V + V++ A S E +S+P L SP + + S S + L K+T+ P+ Sbjct: 63 TAEEIFGEPVTVHVKVKANAESSDEHYSSAPITPPLEASPGSVDSSGSSLRLSKKTL-PL 121 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI VGLGKTHL+ Sbjct: 122 ----LNLRYVFNRFVVGPNSRMAHAAAMAVAESPGREF-----NPLFICGGVGLGKTHLM 172 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI + ++ P +V Y++ E F AIR + +D R DL+L+DD+QF++G Sbjct: 173 QAIGHYRLEIDPGAKVSYVSTETFTNDLILAIRQDRMQAFRDRYRAADLILVDDIQFIEG 232 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L D+ Q+V A+DRPPS++ L R+ SR G+ + D E R Sbjct: 233 KEYTQEEFFHTFNALHDAGSQIVLASDRPPSQIPRLQERLMSRFSMGLIADVQAPDLETR 292 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +IL+ + E ++ + +++ +A T++ REL+GA + + +FA I + Sbjct: 293 MAILQKK-----AEHERVGLPRDLIQFIAGRFTSNIRELEGALTRAI---AFASITGLPM 344 Query: 393 A-DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 D + L G+ ++ + + VA+ + ++ +++ S R R V + RQV MYL + Sbjct: 345 TVDSIAPMLDPNGQGVEVTPKQVLDKVAEVFKVTPDEMRSASRRRPVSQARQVGMYLMRQ 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IG FG +DHTTV++A+ +VEK L +D + +V+ ++ L+ Sbjct: 405 GTNLSLPRIGDTFGGKDHTTVMYAIEQVEKKLSSDPQIASQVQKIRDLL 453 >gi|306821799|ref|ZP_07455394.1| ribosomal subunit interface protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550166|gb|EFM38162.1| ribosomal subunit interface protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 442 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 116/335 (34%), Positives = 201/335 (60%), Gaps = 11/335 (3%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 +++ F F+ G+SN +A A ++AE + NPLF++ VGLGKTHL+ AI+N Sbjct: 101 TKYTFDAFVTGTSNNLAYAACIAVAENPAFETPKDAYNPLFLYGGVGLGKTHLMHAISNR 160 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 ++ PN +V Y+++E F F ++++ + +D R +D +LIDD+QF K Q Sbjct: 161 IKEKNPNYKVSYISSETFTNDFIYSLQNRKTQDFRDKYRELDAILIDDVQFFADKDTTQE 220 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 E H N L + KQ++ ++DRPP EL +L+ R+RSR G+++ + D+E R +IL+ Sbjct: 221 ELFHTFNELYSANKQIILSSDRPPKELTTLEDRLRSRFGMGLTIDIQPPDFETRVAILEK 280 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELL 397 + +K+ P+ +VL +A+ + + REL+GA N++ + + ++ E+A+E+L Sbjct: 281 KCETDRKDVPR-----DVLNLIAKNIKANIRELEGALNKVCAYSNLMKRPISFELANEVL 335 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + L + +++ + I+ +VA+ ++I +D S ++ + + PRQ+AMYL K + S Sbjct: 336 NDLFDKNSDRQLSSDYIKEVVAREFSIKYDDFSSKKKTKNIAYPRQIAMYLCKELMDMSL 395 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 +IG FG+RDHTTV+HA +KVE+ DI KKE Sbjct: 396 SKIGEEFGNRDHTTVIHACKKVEE----DIQSKKE 426 >gi|332991509|gb|AEF01564.1| Chromosomal replication initiator protein dnaA [Alteromonas sp. SN2] Length = 557 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 129/349 (36%), Positives = 206/349 (59%), Gaps = 15/349 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F F+EG SN++A AA +A Y NPLFI+ GLGKTHLL A Sbjct: 220 SNINPTYQFDNFVEGKSNQLARAAATQVANNPGSSY-----NPLFIYGGTGLGKTHLLHA 274 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N + N ++VY+ +E F+ A+++N + K R++D LLIDD+QF K Sbjct: 275 VGNGIVANNENAKIVYMHSERFVQDMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKE 334 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E++ ++ R++SR G+++ + + E R + Sbjct: 335 RSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVA 394 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL + A + ++++ EV +A+ + ++ REL+GA N+++ +F PI T + Sbjct: 395 ILMRKAA-----ENRIHLPNEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDF 448 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ E K + +++IQ+ VA +Y I D+LS RR R+V RPRQVAM L+K + Sbjct: 449 VREALRDLLALQE-KLVTVDNIQKTVADYYKIKVADILSKRRSRSVARPRQVAMALAKEL 507 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PE+G FG RDHTTVLHA RK+ ++ E +K++ + L R +S Sbjct: 508 TNHSLPELGNAFGGRDHTTVLHACRKITQLREESHDIKEDYKNLIRTLS 556 >gi|227529862|ref|ZP_03959911.1| DNA-directed DNA replication initiator protein [Lactobacillus vaginalis ATCC 49540] gi|227350231|gb|EEJ40522.1| DNA-directed DNA replication initiator protein [Lactobacillus vaginalis ATCC 49540] Length = 439 Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 134/344 (38%), Positives = 211/344 (61%), Gaps = 13/344 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PL+ + F TF+ G N++A AA ++AE Y NPLFI+ VGLGKTHL++A Sbjct: 102 TPLNPHYNFKTFVVGEGNKMAHAAAFAVAESPGGLY-----NPLFIYGGVGLGKTHLMEA 156 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ P +V Y+T+E F F +I+ N ++ RN+DLLLIDD+QFL K Sbjct: 157 IGNHMLQLNPAAKVKYVTSEEFTNDFIHSIQSNSTEKFREEYRNLDLLLIDDIQFLANKE 216 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N+L D+ KQ+V +DR P+E+ L R+ SR + G++V + D E R + Sbjct: 217 GTQLEFFNTFNALHDNKKQIVMTSDRIPNEIPELQDRLVSRFRWGLTVEITPPDLETRIA 276 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIA 393 IL++++ E+ +NI + L ++A + T+ REL+GA ++ F + +T +A Sbjct: 277 ILRSKV-----EEDHINIGNDTLNYIAGQIDTNIRELEGALTKVQAFSNLSQEPITPHLA 331 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L L + I IQ+ VA+ YNI+++D++ +RV+ +V PRQ+AMYLS+ +T Sbjct: 332 SQALRGL-QRTTKTTITITSIQKNVAEFYNITQSDIIGKKRVKQIVVPRQIAMYLSRELT 390 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 S P+IG+ FG +DHTTVLHA+ K+E+ L TD L++++ LK Sbjct: 391 DYSLPKIGKEFGGKDHTTVLHAIDKIEEELRTDNELQEQLNTLK 434 >gi|146328959|ref|YP_001208941.1| chromosomal replication initiator protein [Dichelobacter nodosus VCS1703A] gi|146232429|gb|ABQ13407.1| chromosomal replication initiator protein [Dichelobacter nodosus VCS1703A] Length = 442 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 135/353 (38%), Positives = 205/353 (58%), Gaps = 17/353 (4%) Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +P F S L+ + F FI G SN A A + S G + NPL I+ GLGK Sbjct: 96 FAPTFNSRLNPHYQFENFIVGKSNDNAYAAVHRV----SKGLLSEDFNPLLIYGGTGLGK 151 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL---RNIDLLLID 266 +HL+ A NA + + RV+YLTAE F + +AI+ N + D + RN D LLID Sbjct: 152 SHLMHAAGNA-LCQNGKKRVMYLTAEEFTNDYINAIK-NPKREMSDFINFYRNADALLID 209 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK Q EF H NSL D +Q++ DR P E+E L R++SR G++V + Sbjct: 210 DVQFLSGKNRSQEEFFHTFNSLFDKKRQIILTCDRFPKEIEGLADRLKSRFGSGLTVSVA 269 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 DYE R +IL+ S+ E ++ +EV ++A VT++ R+L+GA ++ F Sbjct: 270 PPDYETRIAILQ-----SKAERLHFSLPKEVEEYIAEKVTSNIRDLEGALRKVYAYCEFN 324 Query: 386 -PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 I+T +IA L+ L+ + + I+ I+ + A H+NIS D+ S +R+ + PRQ+ Sbjct: 325 HEIITLDIARNALNDLIQ-AQNCDITIDHIRTITATHFNISVEDMDSKKRMAAITLPRQI 383 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 AM+L+K +T S+PEIG+ FG RDH+TV+HA RK++++L+ + + KE +LK Sbjct: 384 AMHLAKSLTQHSYPEIGKIFGKRDHSTVIHACRKIDELLQENESFYKEYNVLK 436 >gi|195973842|gb|ACG63486.1| chromosomal replication initiator protein DnaA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|195973844|gb|ACG63487.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] gi|195973846|gb|ACG63488.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] gi|195973848|gb|ACG63489.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] gi|195973850|gb|ACG63490.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] Length = 434 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 150/444 (33%), Positives = 231/444 (52%), Gaps = 67/444 (15%) Query: 80 FLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI----- 134 + K IK++Y E I+ QE H G ++ S S EK SP +T + P Sbjct: 12 YFKKHIKSKYGEIISSTIQEFHD---GDLLIEYSNKKFSGEK---SPEVTSVGPQANFFN 65 Query: 135 -----------NTNISKSP------------------------IILGKQTISPVFGSPLD 159 T++++ P +I K FG PL Sbjct: 66 QKNVEIKDDSEETSLNQEPKKSQKKLSSKNSASQELFGFDEAMLITDKDDQEYSFGLPLK 125 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIAN 218 ++VF +F+ G +N++A AA ++ +L NPLFI+ GLGKTHL+QAI N Sbjct: 126 EKYVFDSFVVGDANKIARAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQAIGN 179 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + + PN R++Y +E F+ + ++IR + R+ D+LLIDD+QF+ GK Sbjct: 180 HAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTA 239 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R +IL Sbjct: 240 QEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL- 298 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV----FRHSFAPILTAEIA 393 + + D + E +A V T+ REL+GA N+++ F H P T E+A Sbjct: 299 ----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHK-DP--TIEVA 351 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T Sbjct: 352 QACLRDVIKIQE-KKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELT 410 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVR 477 S PEIG FG RDHTTV+HAV+ Sbjct: 411 SHSLPEIGNAFGGRDHTTVMHAVK 434 >gi|88803646|ref|ZP_01119170.1| chromosomal replication initiation protein [Polaribacter irgensii 23-P] gi|88780379|gb|EAR11560.1| chromosomal replication initiation protein [Polaribacter irgensii 23-P] Length = 475 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 151/490 (30%), Positives = 265/490 (54%), Gaps = 38/490 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ ES++ +K+ + P Y +WF+ +K + + + VP+ F W++ Y+ Sbjct: 1 MTLSSESVWNECLIFIKDNIKPQAYKTWFEPIKPVKLSGESLTIQVPSKFFYEWLEEHYI 60 Query: 91 ETITKLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITK--------LSPINTNIS-- 139 KL + R G + L+ V + + +++ P I K L P N +S Sbjct: 61 ----KLLRVALVRQLGSDAKLIYDVKMEN-NYSSNRPQIVKIPSSNRNPLKPQNVTVSLD 115 Query: 140 ------KSPIIL-GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 ++P ++ G Q + S L+ + F+ F+EG SNR+A +A ++A + G T Sbjct: 116 SGKRELRNPFVIPGLQKVK--IESQLNPNYNFANFVEGDSNRLARSAGMAVA--NKPGGT 171 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 + NPL I+ VGLGKTHL AI + P+ V+Y+++E F +F +++ N + Sbjct: 172 S--FNPLLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRND 229 Query: 253 LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R Sbjct: 230 FIHFYQMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQR 289 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + SR + G+S L DYE R SIL+N+L E P E+++ ++A+ + ++ REL Sbjct: 290 LLSRFKWGLSAELQAPDYETRISILQNKLFRDGVEMP-----EDIVGYIAKNIKSNVREL 344 Query: 372 DGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +G ++ + SF + E+A +++ V + K++ I+ IQ+ V+K++++ L Sbjct: 345 EGVIISMIAQASFNRREFSLELAKQIVDKFVKNTK-KEVSIDYIQKEVSKYFDMDVATLQ 403 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 S R R +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + ETD + Sbjct: 404 SKTRKRHIVQARQLAMFFAKRLTKTSLASIGNQIGQRDHATVLHACKTVDNLTETDKQFR 463 Query: 491 KEV-ELLKRL 499 K V +L K+L Sbjct: 464 KYVDDLTKKL 473 >gi|268315579|ref|YP_003289298.1| chromosomal replication initiator protein DnaA [Rhodothermus marinus DSM 4252] gi|262333113|gb|ACY46910.1| chromosomal replication initiator protein DnaA [Rhodothermus marinus DSM 4252] Length = 503 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 157/514 (30%), Positives = 261/514 (50%), Gaps = 58/514 (11%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSV--PTNFLKAWIK 86 +E E+I+ +++ V + +WF+ +K S+ + + L+V P+ F W++ Sbjct: 1 MERTPEAIWHACLEIIRDNVNRQSFKTWFEPIKPVSLTEEDDQIKLTVELPSRFYYEWLE 60 Query: 87 NRYL----ETITKLF--------------QEEHSRIQGVEILVRSVALPS---------- 118 Y +TITK+ ++ S +G+ SV +P+ Sbjct: 61 EHYYSLLRKTITKVLGPKGRLFYKIVIEKEDPQSGFEGI-----SVNMPAHPPETTPPPP 115 Query: 119 ----VEKTASSPSITKLSPINTNISKSPIILGKQTISPVF-----GSPLDSRFVFSTFIE 169 + ++P IT SP+ + P+ I + S LD ++ F FIE Sbjct: 116 PPRTRPVSPTAPPITPESPVEVAEQEPPVPTNPFAIPGIIRKIQVDSQLDPKYTFERFIE 175 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G NR+A +AA +IA+ G T+ NP ++ VGLGKTHL+QAI N + + + Sbjct: 176 GDCNRLARSAALAIAQ--QPGATS--FNPFLVYGGVGLGKTHLIQAIGNYARQHHTAETI 231 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 Y+++E F F AI+ N R+IDLL++DD+QF GK Q EF H+ N+L Sbjct: 232 RYVSSEQFTNEFVQAIQHNRINEFSLFYRHIDLLIVDDIQFFGGKEKTQEEFFHIFNALH 291 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + KQ+V +ADRPP ++ ++ R+ SR Q G+ + D E R +IL+ + ED Sbjct: 292 QTGKQIVLSADRPPKDIPGIEERLLSRFQWGLMADVQPPDLETRIAILRRK-----AEDE 346 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETK 407 + + ++V+ +A V ++ REL+GA +LV ++ + +A E L L+ Sbjct: 347 GIELGDDVIEFIAHHVKSNFRELEGALLRLVAHAAYQRRDIDLALAREALRDLIKESRVT 406 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 + I+ IQ++V ++++I + + S R R +V+ RQVAMY K T S IG FG R Sbjct: 407 -LTIDQIQQLVCEYFDIEPDLIRSKTRKREIVQARQVAMYFCKQFTQHSLKSIGLHFGGR 465 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DH+TV+HA + VE ++ETD ++ +E L+ IS Sbjct: 466 DHSTVIHACQSVENLMETDPKFREIIEELRHKIS 499 >gi|294010810|ref|YP_003544270.1| chromosomal replication initiator protein DnaA [Sphingobium japonicum UT26S] gi|292674140|dbj|BAI95658.1| chromosomal replication initiator protein DnaA [Sphingobium japonicum UT26S] Length = 469 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 154/467 (32%), Positives = 254/467 (54%), Gaps = 28/467 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQ--RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E+ + + + L+ +G ++ W + +L + + L ++F ++ ++ + + Sbjct: 23 ETAWATIRAGLRRDIGARMFDQWLKAAQLGDYCPESQTLDLLFASDFTANFVSGQFGDRL 82 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + ++ + +L A P + +L ++ G + P Sbjct: 83 RMAWRCAGAGVRELRLLR--------APNAVGPRVLELHQAEETVADD----GAADLPPA 130 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S R F F+ G +N +A +AAQ++A G R +PLFIH G GKTHLL Sbjct: 131 --SNFQPRHGFDGFVTGETNHLAYSAAQAMA-----GEAQPRFSPLFIHGGTGQGKTHLL 183 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AIA P+ V+Y++AE FM F +A+R N + K LR LLLIDD+QF+ G Sbjct: 184 HAIARLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLIDDIQFIAG 243 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H +N L+DS ++V ADR P L+++D RI SRL GG+ + ++R Sbjct: 244 KGSTQEEFLHTINDLIDSGARIVVTADRAPQMLDAIDARILSRLAGGLVADIRPAGLDLR 303 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAE 391 +IL+ + AI+ DP + + V+ +AR++ ++ REL+GAFN+L+ + + E Sbjct: 304 LAILEAKRAIAG--DPP--VPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTGRSIDLE 359 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A +L+ V +++ +++IQ+ A HY I ++ S RR R V RPRQVAMYL+K Sbjct: 360 FAQAMLADAVRA-NARRITVDEIQKACAAHYKIDAAEMRSKRRARAVARPRQVAMYLAKK 418 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 MTPRS PEIGR FG RDH+TV+HAVR +E++ +++ + ++ L+R Sbjct: 419 MTPRSLPEIGRIFGGRDHSTVIHAVRTIEELRQSNPDMDADIRALQR 465 >gi|325663383|ref|ZP_08151833.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 4_1_37FAA] gi|325470837|gb|EGC74067.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 4_1_37FAA] Length = 452 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 244/459 (53%), Gaps = 48/459 (10%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W L+ + V N V++ V +IKN+YL FQ + + G E V+ + Sbjct: 26 FKTWILPLRVYKVTSNTVYILVNLKASIDYIKNKYLLP----FQVCIAEVVGKEYEVKFI 81 Query: 115 ALPSVE------KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 A + KTA+ S K T+S + L+ ++ F TF+ Sbjct: 82 AENEFDPKDFEDKTATPKS-------------------KVTVSQ--AANLNPKYTFDTFV 120 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G +N A A+ ++AE Y NPLF++ VGLGKTHL+ +IA+ ++ +P + Sbjct: 121 VGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSIAHFILENEPEKK 175 Query: 229 VVYLTAEYFMWRFASAIRDNCALN------LKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 V+Y+T+E F AI++ N ++ R+ID+LLIDD+QF+ GK Q EF Sbjct: 176 VLYVTSETFTNELIEAIKNGKTGNESAMTAFREKYRSIDVLLIDDIQFIIGKESTQEEFF 235 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L S KQ++ ++D+PP ++E+L+ R+RSR + G+ + DYE R +IL+ + Sbjct: 236 HTFNHLHISGKQIIISSDKPPKDIETLEARLRSRFECGLVADISSPDYETRMAILRKKEE 295 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV--FRHSFAPILTAEIADELLSH 399 + + K NI + V+ ++A V ++ REL+G+ N+L+ ++ API +A E L Sbjct: 296 LDGLD--KYNIPDAVMQYIASNVKSNIRELEGSLNKLIALYKLKNAPI-DINLAAEALKD 352 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 +V+ E +++ E I +V++H+NIS DL S +R + PRQ+ MYL + MT Sbjct: 353 IVSPNENRQVTPELILDVVSEHFNISIADLKSGKRNAEIAIPRQIVMYLCRTMTDTPLKA 412 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 IG G RDH+T+ H V KV ++ T ++++K+ Sbjct: 413 IGLTLGGRDHSTISHGVDKVTADIKASDTFSNTIDIIKK 451 >gi|81251057|gb|ABB69864.1| DNA replication initiator protein [Nitrosospira sp. TCH711] Length = 476 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 149/477 (31%), Positives = 246/477 (51%), Gaps = 47/477 (9%) Query: 46 LKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +N++ + +W + L+ ++ L P F+ W+K+ +L IT++ + + Sbjct: 15 FENELSAQQFNTWIKPLRLQLSDDSPEPVLTLIAPNRFVLQWVKDNFLSGITQMAENHFA 74 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI--ILGKQTISPVFGSPLDS 160 R + + + PS SPSI N + P+ + T SP +P D+ Sbjct: 75 RPVQLRLELAGQVAPS-----PSPSIGG----NNGMDSRPVTAVFDAPTGSPQ-KAPKDT 124 Query: 161 R-------------------FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + F F+TF+ G +N++A A +AE Y NP FI Sbjct: 125 KDVKDTKEKQEKNPTRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFFI 179 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+QAI N ++ P+ +V Y+ +E ++ A + K ++D Sbjct: 180 YGGVGLGKTHLIQAIGNFVVEHNPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLD 239 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G+ Sbjct: 240 LLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGL 299 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL L + ED + ++E V +A+ + ++ REL+GA ++V Sbjct: 300 TVAVEPPELEMRVAIL---LKKALMED--IILDESVAFFIAKHIRSNVRELEGALKRVVA 354 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F L+ E+A E L L+ + +++ IE+IQ+ VA +Y I ++ S +R R V Sbjct: 355 YSRFTGHALSLELAREALKDLLAV-QNRQISIENIQKTVADYYKIKVAEMYSKKRSRVVA 413 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 RPRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 414 RPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNTL 470 >gi|331086957|ref|ZP_08336033.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409618|gb|EGG89057.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 456 Score = 228 bits (581), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 147/459 (32%), Positives = 244/459 (53%), Gaps = 48/459 (10%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W L+ + V N V++ V +IKN+YL FQ + + G E V+ + Sbjct: 26 FKTWILPLRVYKVTSNTVYILVNLKASIDYIKNKYLLP----FQVCIAEVVGKEYEVKFI 81 Query: 115 ALPSVE------KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 A + KTA+ S K T+S + L+ ++ F TF+ Sbjct: 82 AENEFDPKDFEDKTATPKS-------------------KVTVSQ--AANLNPKYTFDTFV 120 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G +N A A+ ++AE Y NPLF++ VGLGKTHL+ +IA+ ++ +P + Sbjct: 121 VGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSIAHFILENEPEKK 175 Query: 229 VVYLTAEYFMWRFASAIRDNCALN------LKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 V+Y+T+E F AI++ N ++ R+ID+LLIDD+QF+ GK Q EF Sbjct: 176 VLYVTSETFTNELIEAIKNGKTGNESAMTAFREKYRSIDVLLIDDIQFIIGKESTQEEFF 235 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L S KQ++ ++D+PP ++E+L+ R+RSR + G+ + DYE R +IL+ + Sbjct: 236 HTFNHLHISGKQIIISSDKPPKDIETLEARLRSRFECGLVADISSPDYETRMAILRKKEE 295 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV--FRHSFAPILTAEIADELLSH 399 + + K NI + V+ ++A V ++ REL+G+ N+L+ ++ API +A E L Sbjct: 296 LDGLD--KYNIPDAVMQYIASNVKSNIRELEGSLNKLIALYKLKNAPI-DINLAAEALKD 352 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 +V+ E +++ E I +V++H+NIS DL S +R + PRQ+ MYL + MT Sbjct: 353 IVSPNENRQVTPELILDVVSEHFNISIADLKSGKRNAEIAIPRQIVMYLCRTMTDTPLKA 412 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 IG G RDH+T+ H V KV ++ T ++++K+ Sbjct: 413 IGLTLGGRDHSTISHGVDKVTADIKASDTFSNTIDIIKK 451 >gi|317050200|ref|YP_004111316.1| chromosomal replication initiator protein DnaA [Desulfurispirillum indicum S5] gi|316945284|gb|ADU64760.1| chromosomal replication initiator protein DnaA [Desulfurispirillum indicum S5] Length = 460 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 145/463 (31%), Positives = 240/463 (51%), Gaps = 27/463 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L Q+ + +W + + FH + V L VP+ F+K ++ RYLET+ ++ + Sbjct: 14 LSTQISEQNFYTWIEPMHFHDKSDDTVTLHVPSRFMKDIVEERYLETLRGAIEKLEKKAY 73 Query: 106 GVEILVRSVA------LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 V ILV P+ E A S+ + +P T + + +SP Sbjct: 74 RVNILVEQQVDKIPEKEPAHEPAALETSVAQTTPSPTQQKEKLHSDVRHILSP------- 126 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 R++F +F+ GSSN+ A ++A + G T NPLFI+ VGLGKTHL+QA+ NA Sbjct: 127 -RYIFDSFVVGSSNQ--FAHAAAMAVANGPGVT---YNPLFIYGGVGLGKTHLMQAVGNA 180 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 + + +++Y+ +E F +A+++ + R +D+LLIDD+QF+ GK Q Sbjct: 181 IYQDNRSAKIMYVQSEVFTNEMINALKNGKIEEFRQRYRYVDVLLIDDIQFIAGKDRTQE 240 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L KQ+V ++D+ P E+ L+ R+RSR + G+ + D E + +IL+ Sbjct: 241 EFFHTFNTLHGEKKQIVLSSDKFPREIPHLEERLRSRFEWGLIADIQPPDLETKMAILRK 300 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELL 397 + E + + EV + +A+ + + REL+G N++ + H T +I +L Sbjct: 301 K-----AESIDMYLPNEVALFIAKAIKHNIRELEGCLNRISAYAHLTGVEPTVDIIKNVL 355 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 ++ + K + EDIQR V+ +N+ NDL S R + R +AMY + +T S Sbjct: 356 KDILKDSD-KVVNCEDIQRQVSLRFNLKTNDLKSKNRSSELTHARHIAMYFCRKLTNMSL 414 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+IGR FG RDH+TV+HA++ VE D K E+E ++ I Sbjct: 415 PQIGREFGGRDHSTVVHAIKTVEAKSSNDDNFKVELESIENQI 457 >gi|30248032|ref|NP_840102.1| dnaA; chromosomal replication initiator protein [Nitrosomonas europaea ATCC 19718] gi|38257436|sp|Q82Y84|DNAA_NITEU RecName: Full=Chromosomal replication initiator protein DnaA gi|30179917|emb|CAD83912.1| dnaA; chromosomal replication initiator protein [Nitrosomonas europaea ATCC 19718] Length = 459 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 150/473 (31%), Positives = 245/473 (51%), Gaps = 28/473 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETI 93 E+ + + ++ + +W + LK N + L P F+ WIK+ ++ I Sbjct: 5 ETFWHFCLKHFRQELNGQQFNTWIKPLKLEVCPDEKNTLILIAPNRFVLQWIKDNFVTRI 64 Query: 94 TKLFQEE-HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 ++ Q+ + RI S L E S + S K P Q ++ Sbjct: 65 DEMAQDHFNERI--------SFRLELREPAESEAQTVRTSAQKNREDKKPAAEKTQGVTS 116 Query: 153 VFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P L++ F F F+ G +N++A A +AE Y NPLFI+ VGLGKT Sbjct: 117 RKTNPSQLNASFTFDAFVTGKANQLARAGAIQVAERPGIAY-----NPLFIYGGVGLGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI N ++ ++ Y+ AE ++ SA + K ++DLLL+DD+QF Sbjct: 172 HLMQAIGNYVLELDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQF 231 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L+++ KQV+ +D P E+ L+ R+ SR G++V + + Sbjct: 232 FSGKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPEL 291 Query: 330 EMRFSIL-KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPI 387 EMR +IL K LA K+ ++E +A+ + ++ REL+GA + L F Sbjct: 292 EMRVAILLKKALA------EKIELDENTAFFIAKYIRSNVRELEGALKRVLAFSRFTGHS 345 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 ++ ++A E L L+ + +++ IE+IQ+ VA +Y I D+ S +RVRT+VRPRQVAM Sbjct: 346 ISLDLAKEALKDLLAI-QNRQISIENIQKTVADYYKIKVADMYSKKRVRTIVRPRQVAMA 404 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++K +T S P+IG FG RDHTTVLHA RK+ ++ +D + ++ L ++ Sbjct: 405 IAKELTQLSLPDIGEAFGGRDHTTVLHAHRKIIELRTSDPGINRDFNALMHIL 457 >gi|166032891|ref|ZP_02235720.1| hypothetical protein DORFOR_02612 [Dorea formicigenerans ATCC 27755] gi|166027248|gb|EDR46005.1| hypothetical protein DORFOR_02612 [Dorea formicigenerans ATCC 27755] Length = 462 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 145/460 (31%), Positives = 247/460 (53%), Gaps = 38/460 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + LK + V+ + ++ V + +I +Y + E I G E ++ V Sbjct: 26 FNTWIKPLKVYDVIDDTAYILVNKDSSVEYIDKKYRLPLMVCIAE----ITGKEYEIQFV 81 Query: 115 ALPSVEKTASSPSITKLSPI-NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 S KL+ I N +I K+T S + L+ ++ F TF+ G +N Sbjct: 82 ----------SEDDDKLNEIHNASIDNGQ---KKKTKSLAEKAGLNPKYTFDTFVVGGNN 128 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 A A+ ++AE Y NPLF++ VGLGKTHL+ +IA+ + + P +V+Y+T Sbjct: 129 NFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSIAHFILDKNPKKKVLYVT 183 Query: 234 AEYFMWRFASAIR-------DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +E F A+R ++ LN +D RNID+LLIDD+QF+ GK Q EF H N Sbjct: 184 SETFTNELIDALRNGKTAGNESAMLNFRDKYRNIDVLLIDDIQFIIGKESTQEEFFHTFN 243 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L KQ++ ++D+PP ++E+L+ R+R+R + G+ + DYE R +IL+ ++ + Sbjct: 244 HLHTLGKQIIISSDKPPKDIETLESRLRTRFEWGLIADISSPDYETRMAILQKKIELDHL 303 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV----FRHSFAPILTAEIADELLSHLV 401 E K NI +VL ++A V ++ REL+G+ N+L+ ++ PI A +A E L ++ Sbjct: 304 E--KYNIKNDVLDYIAANVKSNIRELEGSLNKLIALYKLNNNNNPIDIA-LAAEALKDII 360 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 ++ +++ E I +VA H+ I+ DL S +R + PRQ+ MYL + MT + IG Sbjct: 361 SSDNRREVTPELILDIVADHFGITVADLKSKKRDSEIAVPRQICMYLMRTMTDTALKGIG 420 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G +DH+TV + V K+ K +E+D + + ++K+ I+ Sbjct: 421 AVLGGKDHSTVKYGVEKIAKDIESDEMMANTINIIKKKIN 460 >gi|257065521|ref|YP_003151777.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii DSM 20548] gi|256797401|gb|ACV28056.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii DSM 20548] Length = 459 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/363 (36%), Positives = 212/363 (58%), Gaps = 13/363 (3%) Query: 146 GKQTISPVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 G+ IS V P L+ +F+ F+EG SN+ AL +Q++AE S+ NPLFI+ Sbjct: 104 GQMRISKVNSFPRPQLEEENIFANFVEGKSNQYALGVSQAVAENISNKSQARLYNPLFIY 163 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHL+QAIA+ + + + V+YL++E F SA+R ++ R++D+ Sbjct: 164 GESGLGKTHLMQAIAHEILDNRDDAYVMYLSSEKFTNEMISALRSTKNEKFREKYRSVDI 223 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ GK Q EF H N L ++ KQ+V ++DRPP E++ L+ R+ SR G+ Sbjct: 224 LLIDDIQFIAGKEGTQEEFFHTFNDLYNTGKQIVISSDRPPKEIKHLENRLISRFSWGII 283 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-- 379 V +G D+E R +IL+ +L + I+ +L ++A + T+ R+L+GA + + Sbjct: 284 VDIGKPDFETRVAILQKKL-----DQLGAYIDNNILFYIAENIDTNIRDLEGALSTAIAY 338 Query: 380 FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + ++T E A + ++ V + K + I+DIQ+ VA Y I +D+ R + +V Sbjct: 339 AKSDNREVVTMEDAIKGVATRVK-DKKKHVGIDDIQKYVADKYGIKLSDIKGKSRKKEIV 397 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PRQ+AM+LS+ + S I F DRDHTTV+H + K++K +E D K+E++ L + Sbjct: 398 NPRQIAMFLSREILEDSLVTISNAF-DRDHTTVMHGIDKIQKQIEEDDNFKEEIDTLLKE 456 Query: 500 ISE 502 I+E Sbjct: 457 ITE 459 >gi|75906226|ref|YP_320522.1| chromosomal replication initiation protein [Anabaena variabilis ATCC 29413] gi|123745335|sp|Q3MHA9|DNAA_ANAVT RecName: Full=Chromosomal replication initiator protein DnaA gi|75699951|gb|ABA19627.1| chromosomal replication initiator protein, DnaA [Anabaena variabilis ATCC 29413] Length = 460 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 148/471 (31%), Positives = 256/471 (54%), Gaps = 31/471 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ +S+++ V RL+ ++ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MEISIDSLWSQVLERLQIELSRPTFETWIKTANAERLENNCLVIITPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 TI + Q I G VEI + +VA + +L P +I ++P Q Sbjct: 61 TTIANVVQS----ILGHPVEIYI-TVAKGEEFEEIGGGGAWEL-PTTNSIYETP----NQ 110 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + L++++VFS F+ G++NR+A A+ ++AE + NPLF+ VGLG Sbjct: 111 NRQP--NTELNAKYVFSRFVVGANNRMAHAASLAVAESPGREF-----NPLFLCGGVGLG 163 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + + P+ ++ Y++ E F +AIR++ + ++ R D+LL+DD+ Sbjct: 164 KTHLMQAIGHYRWEICPDSKIFYVSTEQFTNDLITAIRNDSMQSFREHYRAADVLLVDDI 223 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK Q EF H N+L ++ KQVV A+DRPP+++ SL R+ SR G+ + Sbjct: 224 QFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQAP 283 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 D E R +IL+ + E K+ + +V+ ++A T++ REL+GA + + S Sbjct: 284 DLETRMAILQKK-----SEYEKIRLPRDVIEYIATNFTSNIRELEGALTRALAYISIWGL 338 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 P+ A +A L++ T E I ++A +++IS DL SN R R + RQ+ Sbjct: 339 PMTVANLAPVLVTPTEKIAATP----EAILTVIADNFDISVEDLKSNSRRREISWARQIG 394 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 MYL + T SFP IG FG +DHTTVL++ K+ +++E+D L + + L Sbjct: 395 MYLMRQHTDLSFPRIGEEFGGKDHTTVLYSCDKIAQLVESDRGLSQTLRQL 445 >gi|256419058|ref|YP_003119711.1| chromosomal replication initiator protein DnaA [Chitinophaga pinensis DSM 2588] gi|256033966|gb|ACU57510.1| chromosomal replication initiator protein DnaA [Chitinophaga pinensis DSM 2588] Length = 477 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 145/482 (30%), Positives = 259/482 (53%), Gaps = 33/482 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 CE ++ + +++ V + +WF+ +K + +N++ + VP+ F +++ Y+ + Sbjct: 5 CEQVWERCLNIIRDIVEWQPFKTWFEPIKPIQLENNVLTIQVPSQFFYEYLEEHYVGLLG 64 Query: 95 KLFQEEHSRIQGVEILV-----------RSVALPSVEKTASSPSITKLSPINTNISKSPI 143 K + E + +E + ++V +P + S N K+P Sbjct: 65 KTIKRELGKDARLEYRIVVENGTPHQHPKTVNMPGQFTKSKKDSEVDFPLTIQNPVKNPF 124 Query: 144 IL-GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 ++ G + + S L+ + F ++IEG NRVA A ++++E G T+ NPL I+ Sbjct: 125 VIPGIKRVQ--IDSQLNPHYTFESYIEGDCNRVARRAGKTVSE--KPGGTS--FNPLVIY 178 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 +VGLGKTHL QAI N + PN V+Y++AE F+ +F +++ + + ID+ Sbjct: 179 GAVGLGKTHLAQAIGNEVKRIHPNKAVLYVSAEKFINQFIDHSKNSIINDFIHFYQLIDV 238 Query: 263 LLIDDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 L++DD+QF + + Q F + N L S KQ++ +D+PP +L+ L R+ SR + G+S Sbjct: 239 LIVDDIQFFARAEKTQDAFFAIFNHLHQSGKQLILTSDKPPKDLDGLQERLLSRFRWGLS 298 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + D+E R IL+ ++ E PK EV+ +VA + ++ REL+GA L+ + Sbjct: 299 ADMQMPDFETRMEILEMKMRNDGLEMPK-----EVVKYVAYNIQSNVRELEGALISLLAQ 353 Query: 382 HSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + E+A +L V T +K++ IE IQ+MV +++++ + LL R R +V+ Sbjct: 354 SSLNRKEIDLELAKRVLKSFVKTS-SKEITIESIQKMVCEYFDVPYDKLLQKTRKREIVQ 412 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD-------ITLKKEV 493 RQ+ MYL+K T S IG FG RDHTTV+H+ + V+ +++TD I L+++V Sbjct: 413 ARQITMYLAKSFTKNSLKTIGEHFGGRDHTTVIHSCQTVKDLMDTDNAFRDNVIELQQKV 472 Query: 494 EL 495 +L Sbjct: 473 QL 474 >gi|81251053|gb|ABB69861.1| DNA replication initiator protein [Nitrosospira sp. KAN8] Length = 476 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 147/470 (31%), Positives = 244/470 (51%), Gaps = 33/470 (7%) Query: 46 LKNQVGPDVYASWFQRLKF---HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +N++ + +W + L+ H + + L P F+ W+K+ +L IT++ + + Sbjct: 15 FENELSAQQFNTWIKPLRLRLSHDSPESALTLIAPNRFVLQWVKDNFLSGITQMAENHFA 74 Query: 103 R-------IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI-------ILGKQ 148 R + G S+++ S P + K+P I KQ Sbjct: 75 RPVQLRLELAGQVPASASLSIGGNNGMESRPVAAVFDAPAESAQKAPKDTRDTKDIKEKQ 134 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P + L+ F F+TF+ G +N++A A +AE Y NP FI+ VGLG Sbjct: 135 EKNP---TRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFFIYGGVGLG 186 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI N ++ P +V Y+ +E ++ A + K ++DLLLIDD+ Sbjct: 187 KTHLIQAIGNFVVEHNPAAKVRYIHSEQYVSDVVGAYQHKAFDEFKRYYHSLDLLLIDDI 246 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G++V + Sbjct: 247 QFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPP 306 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + EMR +IL L + ED + ++E V +A+ + ++ REL+GA ++V F Sbjct: 307 ELEMRVAIL---LKKALMED--IILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGH 361 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 L+ ++A E L L+ + +++ IE+IQ+ VA +Y I ++ S +R R V RPRQ+AM Sbjct: 362 ALSLDLAREALKDLLAV-QNRQISIENIQKTVADYYKIKVAEMYSKKRSRVVARPRQMAM 420 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 421 AISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNTL 470 >gi|121607005|ref|YP_994812.1| chromosomal replication initiation protein [Verminephrobacter eiseniae EF01-2] gi|121551645|gb|ABM55794.1| chromosomal replication initiator protein DnaA [Verminephrobacter eiseniae EF01-2] Length = 483 Score = 228 bits (580), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 232/431 (53%), Gaps = 16/431 (3%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 + L V F WI+ +Y IT L + + + +E+ + V SV +TA +P + Sbjct: 65 ITLLVGNRFKLDWIRAQYASQITALLGDLYGQPMALELAL--VPRESVARTAHTPRPSAS 122 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 P ++S G+ L++ F T +EGS+NR+A +A +A + H Y Sbjct: 123 GPPGAPGAES-ASAGRDEAPQALRHRLNAALTFETLVEGSANRMARSAGMHVAGMPGHLY 181 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLF++ VGLGKTHL+ A+ N + +P +V+Y+ AE F+ + + Sbjct: 182 -----NPLFVYGGVGLGKTHLVHAVGNRLLASRPQAKVLYVHAEQFVSDVVRSYQRRTFD 236 Query: 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K+ ++DLLLIDD+QF K Q EF + +LL +V +D P L ++ Sbjct: 237 EFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLTKKSHLVMTSDTYPKGLSNIHE 296 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+ SR G++V + + EMR +IL N+ E P EEV VA+ V ++ RE Sbjct: 297 RLVSRFDSGLTVAIEPPELEMRVAILINKAQAESTEMP-----EEVAFFVAKNVRSNVRE 351 Query: 371 LDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 L+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y I D+ Sbjct: 352 LEGALRKILAYSRFNQKEISIQLAREALRDLLSI-QNRQISVENIQKTVADYYKIKVADM 410 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + L Sbjct: 411 YSKKRPASIARPRQIAMYLTKELTQKSLPEIGESFGGRDHTTVLHAVRKIAAERQQLTEL 470 Query: 490 KKEVELLKRLI 500 +++ +L++ + Sbjct: 471 NQQLHVLEQTL 481 >gi|227511152|ref|ZP_03941201.1| DNA-directed DNA replication initiator protein [Lactobacillus buchneri ATCC 11577] gi|227085634|gb|EEI20946.1| DNA-directed DNA replication initiator protein [Lactobacillus buchneri ATCC 11577] Length = 469 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 200/346 (57%), Gaps = 12/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F FI G N++A AA ++E Y NPLF + VGLGKTHL+QAI Sbjct: 134 LNPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLY-----NPLFFYGGVGLGKTHLMQAIG 188 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QGKLI 276 N ++ P V Y+T+E F F +AI+ N + RN+DLL++DD+QF Q + Sbjct: 189 NKRLEDHPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGT 248 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L ++ KQ+V +DR P E+ L R+ SR G+ V + D E R +IL Sbjct: 249 QEEFFHTFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAIL 308 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 K++ + L I E L ++A + ++ REL+GA +++ + + +T ++ E Sbjct: 309 KSKAKLDN-----LTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKSEPITTDLVYE 363 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L ++ I DIQ VA +++++ +DL +R++++V PRQ+AMYLS+ MT Sbjct: 364 ALKGLKLAKANNELSIMDIQNKVASYFHVTISDLKGKKRMKSIVIPRQIAMYLSREMTSN 423 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P+IG+ FG +DHTTV+HA K+ ++++ D ++KE+ +K +S Sbjct: 424 SLPKIGKEFGGKDHTTVIHACDKIAEVIKIDADIRKEISDIKTALS 469 >gi|255283813|ref|ZP_05348368.1| DNA replication initiator protein, ATPase [Bryantella formatexigens DSM 14469] gi|255265696|gb|EET58901.1| DNA replication initiator protein, ATPase [Bryantella formatexigens DSM 14469] Length = 449 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 144/452 (31%), Positives = 252/452 (55%), Gaps = 34/452 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + LK +S +N V + V ++ + YL+ I K + +L V Sbjct: 26 FDTWLKPLKVYSFENNTVSILVASS------QQMYLKYINKKY-----------LLPIKV 68 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 A+ V T +I + P + + ++ + ++ V + L+ R+ F TF+ G +N Sbjct: 69 AIAEV--TGLDCNIEFILPEDADRMEADKLDSQKMSVNVDKANLNPRYTFDTFVVGKNNN 126 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE Y NPLFI+ VGLGKTHL+ +IA+ ++R P+ +V+Y+T+ Sbjct: 127 FAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSIAHFILERNPDTKVLYVTS 181 Query: 235 EYFMWRFASAIR--DNCALN-LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 E F IR +N A++ ++ R+ID+LLIDD+QF+ GK Q EF H N L S Sbjct: 182 ETFTNEVIENIRSGNNTAMSKFREKYRSIDVLLIDDIQFIIGKESTQEEFFHTFNDLHSS 241 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ ++D+PP E+ +L+ R++SR + G+ + DYE R +IL+ R +E Sbjct: 242 GKQIIISSDKPPKEMSTLEERLKSRFEWGLIADISSPDYETRMAILRKR-----EELDGY 296 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKM 409 +I+++V+ ++A + ++ REL+GA N +V F + + E A E L ++++ E + + Sbjct: 297 HIDDDVIQYIATNIKSNIRELEGALNIVVAFGNLNKRKIDLESAKEALKNIISPDEKRVI 356 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 E I + +H++ISR DL ++R +V PRQ+AMYL + MT F EIG+ G +DH Sbjct: 357 TPELIINTICEHFHISREDLTGSKRNSEIVFPRQIAMYLCREMTQTQFKEIGKIMGGKDH 416 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TV+H K+ ++ + +K + +L + I+ Sbjct: 417 STVIHGYDKIAYEVKNNENVKNTINILIKKIN 448 >gi|156740029|ref|YP_001430158.1| chromosomal replication initiation protein [Roseiflexus castenholzii DSM 13941] gi|189044602|sp|A7NFB8|DNAA_ROSCS RecName: Full=Chromosomal replication initiator protein DnaA gi|156231357|gb|ABU56140.1| chromosomal replication initiator protein DnaA [Roseiflexus castenholzii DSM 13941] Length = 480 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 152/486 (31%), Positives = 246/486 (50%), Gaps = 35/486 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N ++ L+ Q+ Y +W + + + + + P F+K +++RYL T Sbjct: 1 MNLTKVWNTTLGSLQVQLPRHEYNTWVRGANLLDIDNGVAIIRAPNAFIKEGLESRYLTT 60 Query: 93 ITK---------------LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTN 137 + + L E RI G I R A + + +P LS N Sbjct: 61 LREQLGSVVGFPVDVRIVLATSESERIDGASINGRHAARDTRKSDHHAP----LSGGYGN 116 Query: 138 ISKSPI----ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 P+ + + V S L+ R+ F FI G SNR+A A ++AE + Y Sbjct: 117 GISHPLERASVHQLELHRAVRSSMLNPRYTFDRFIIGPSNRLANAACMAVAEHPAQAY-- 174 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPLF++ VGLGKTHLL AI N + R P + V+Y+++E F ++IR Sbjct: 175 ---NPLFLYGGVGLGKTHLLHAIGNFVLDRDPEVNVLYVSSETFTNDLINSIRRQQTEEF 231 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + RNID+LLIDD+QF+ GK Q EF H N+L + KQ++ ++DR P + +L+ R+ Sbjct: 232 RIRYRNIDILLIDDIQFIAGKEQTQEEFFHTFNTLHSAGKQIIISSDRSPKAILTLEERL 291 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 RSR + G+ V + + D E R +IL+ ++ E + + + V+ +A+ + + REL+ Sbjct: 292 RSRFEWGLIVDVQMPDLETRTAILR-----AKAEQSPVPVPQPVIDFLAQRIQSHIRELE 346 Query: 373 GAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 G N++ + + +T E+A LS L++T K++ E I R VA Y++ L Sbjct: 347 GCLNRVTAYAQMYNIPVTIEVATAALSELLDTNRRKRVTPEAILREVAAFYSVDLRSLQG 406 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 R R +V PR VAMYL + T S EIG+ G RDHTTV++ K+ + + TD L++ Sbjct: 407 RGRSRNIVTPRHVAMYLLREETDSSLMEIGQLLGGRDHTTVMYGCDKIAEEINTDARLRQ 466 Query: 492 EVELLK 497 EV ++ Sbjct: 467 EVAAIR 472 >gi|81251049|gb|ABB69858.1| DNA replication initiator protein [Nitrosospira sp. HBN8222A] Length = 476 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 148/476 (31%), Positives = 245/476 (51%), Gaps = 45/476 (9%) Query: 46 LKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +N++ + +W + L+ ++ L P F+ W+K+ +L IT++ + + Sbjct: 15 FENELSAQQFNTWIKPLRLQLSDDSPEPVLTLIAPNRFVLQWVKDNFLSGITQMAENHFA 74 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI--ILGKQTISPVFG----- 155 R + + + PS +SPSI N + P+ + T SP Sbjct: 75 RPVQLRLELAGQVAPS-----ASPSIGG----NNGMDSRPVTAVFDAPTGSPQKAPKDTK 125 Query: 156 -------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ F F+TF+ G +N++A A +AE Y NP FI+ Sbjct: 126 DTKDTKEKQEKNPTRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFFIY 180 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAI N ++ P+ +V Y+ +E ++ A + K ++DL Sbjct: 181 GGVGLGKTHLIQAIGNFVVEHNPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDL 240 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G++ Sbjct: 241 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLT 300 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + EMR +IL L + ED + ++E V +A+ + ++ REL+GA ++V Sbjct: 301 VAVEPPELEMRVAIL---LKKALMED--IILDESVAFFIAKHIRSNVRELEGALKRVVAY 355 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 F L+ E+A E L L+ + +++ IE+IQ+ VA +Y I ++ S +R R V R Sbjct: 356 SRFTGHALSLELAREALKDLLAV-QNRQISIENIQKTVADYYKIKVAEMYSKKRSRVVAR 414 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 PRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 415 PRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNTL 470 >gi|163814987|ref|ZP_02206374.1| hypothetical protein COPEUT_01140 [Coprococcus eutactus ATCC 27759] gi|158449670|gb|EDP26665.1| hypothetical protein COPEUT_01140 [Coprococcus eutactus ATCC 27759] Length = 454 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 148/454 (32%), Positives = 243/454 (53%), Gaps = 43/454 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTN-------FLKAWIKNRYLETITK-LFQEEHSRIQGVE 108 +W + L +SV N V+ ++ FLK + + YLET+ + LFQ + ++ Sbjct: 29 TWIEPLNVYSVEDNKVYFTLDEKYGQRGIEFLKKKLFDIYLETVLRELFQNDSIQV---- 84 Query: 109 ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 I + EK P+ T+ N ISKS L + F FI Sbjct: 85 IFTLQSVMKEEEK---QPTYTE--DYNEAISKSN---------------LRPDYTFENFI 124 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G SN+ A A +A DS G + NPLF++ GLGKTHL+Q+IA+ ++ N++ Sbjct: 125 VGESNKHA--HATCLAVADSPGQD--KFNPLFLYGESGLGKTHLMQSIAHYILQHNSNMK 180 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 V+Y+++ F AI ++ R +D+LLIDD+Q+L GK Q+EF N+L Sbjct: 181 VLYVSSNQFTNEIIEAIAKKTTEEFRNKYRKVDVLLIDDIQYLIGKDATQNEFFDTFNAL 240 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 D KQ++ ++D+PP E+++LD R RSR + GV + + DYE R +ILKN+ I + Sbjct: 241 HDEGKQIILSSDKPPKEIKTLDVRYRSRFEWGVPIDIHAPDYETRMAILKNKAEIKGLK- 299 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGET 406 NI+E + ++A+ +T + REL+GA N+L I +T ++A +L L++ E Sbjct: 300 ---NISEPIFEYIAKNITYNVRELEGALNKLSIYSELGHIKITEDLAKNILKDLISKDEK 356 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 + + I V++H NIS ND++S +R + + RQ++MYL + T + IG FG Sbjct: 357 VTITPDLIINTVSEHLNISVNDIISTKRSQDIATARQISMYLCRKYTDKGLKSIGDSFGG 416 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRL 499 +DH+TV ++KVE+ ++ D + V+ ++K+L Sbjct: 417 KDHSTVHSNIQKVEEKIDKDPEFAEMVDVIIKKL 450 >gi|126640116|ref|YP_001083100.1| chromosomal replication initiation protein [Acinetobacter baumannii ATCC 17978] Length = 398 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 206/347 (59%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVAL-TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ +F FS F+EG SN++A T + + ++ + + NPLF++ GLGKTHL+QA+ Sbjct: 62 LNPQFTFSLFVEGRSNQMAAETCRKVLTQLGASQH-----NPLFLYGPTGLGKTHLMQAV 116 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ L GK Sbjct: 117 GNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHLLAGKEA 176 Query: 277 QH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D E R I Sbjct: 177 SLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEI 236 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPILTAEIA 393 L + + E+ +++ + +A+ V + REL+GA N++V R API + Sbjct: 237 L-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAPIDLDVVR 291 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L L T + +E+IQR+V++++ I +L+ +R R RPRQ+AM L++ +T Sbjct: 292 ESLKDVLAIRART--ISVENIQRVVSEYFRIPLKELIGPKRTRIYARPRQLAMGLARELT 349 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 350 GDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLL 396 >gi|227508127|ref|ZP_03938176.1| DNA-directed DNA replication initiator protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192356|gb|EEI72423.1| DNA-directed DNA replication initiator protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 469 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 199/347 (57%), Gaps = 14/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F FI G N++A AA ++E Y NPLF + VGLGKTHL+QAI Sbjct: 134 LNPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLY-----NPLFFYGGVGLGKTHLMQAIG 188 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QGKLI 276 N ++ P V Y+T+E F F +AI+ N + RN+DLL++DD+QF Q + Sbjct: 189 NKRLEDHPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGT 248 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L ++ KQ+V +DR P E+ L R+ SR G+ V + D E R +IL Sbjct: 249 QEEFFHTFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAIL 308 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAEIAD 394 K++ + L I E L ++A + ++ REL+GA + Q + PI T ++ Sbjct: 309 KSKAKLDN-----LTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKNEPI-TTDLVY 362 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L ++ I DIQ VA +++++ +DL +R++++V PRQ+AMYLS+ MT Sbjct: 363 EALKGLKLAKANNELSIMDIQNKVASYFHVTISDLKGKKRMKSIVIPRQIAMYLSREMTS 422 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P+IG+ FG +DHTTV+HA K+ ++++ D ++KE+ +K +S Sbjct: 423 NSLPKIGKEFGGKDHTTVIHACDKIAEVIKIDADIRKEISDIKTALS 469 >gi|167759577|ref|ZP_02431704.1| hypothetical protein CLOSCI_01934 [Clostridium scindens ATCC 35704] gi|167662804|gb|EDS06934.1| hypothetical protein CLOSCI_01934 [Clostridium scindens ATCC 35704] Length = 461 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 248/467 (53%), Gaps = 33/467 (7%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 R+++++ + +W Q LK + V+ N V + V N +I+ +YL + E I Sbjct: 16 RIEHELSNVSFTTWIQPLKVYDVIDNTVFILVNMNASVEYIEKKYLLPLKVCIAE----I 71 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 G E V + S KL I ++ +T + G L+ ++ F Sbjct: 72 TGTEFEVMFI----------SEDDDKLDEIQNMAIEASQKKKTKTAAEKAG--LNPKYTF 119 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+ G +N A A+ ++AE Y NPLFI+ VGLGKTHL+ +IA+ + + Sbjct: 120 DTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFIYGGVGLGKTHLMHSIAHFILDKN 174 Query: 225 PNLRVVYLTAEYFMWRFASAIR-------DNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 +V+Y+T+E F A++ ++ +D RN D+LLIDD+QF+ GK Sbjct: 175 AKKKVLYVTSETFTNELIEALKNGRTAGNESAMSKFRDKYRNNDVLLIDDIQFIIGKEST 234 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + DYE R +IL Sbjct: 235 QEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISAPDYETRMAIL 294 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV--FRHSFAPILTAEIAD 394 + ++ + E K NI +VL ++A + T+ REL+G+ N+L+ ++ + ++ +A Sbjct: 295 QKKIELDHLE--KYNIPRDVLQYIAENIKTNIRELEGSLNKLIALYKLNNNDVIDISLAS 352 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L +V++ +K+ E I +V+ H+ IS DL SN+R + PRQ++MYL + MT Sbjct: 353 EALKDIVSSQNNRKVTPELILDIVSDHFGISIADLKSNKRSADIANPRQISMYLIRTMTE 412 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG G +DH+TV + V K+ ++ + TL + ++K+ I+ Sbjct: 413 VPLKGIGIILGGKDHSTVKYGVEKITNEMKRNETLSNTINIIKKKIN 459 >gi|94984110|ref|YP_603474.1| chromosomal replication initiator protein DnaA [Deinococcus geothermalis DSM 11300] gi|94554391|gb|ABF44305.1| chromosomal replication initiator protein DnaA [Deinococcus geothermalis DSM 11300] Length = 470 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 159/483 (32%), Positives = 264/483 (54%), Gaps = 30/483 (6%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 K + V + I+ V ++ + Y +WF +K V + + V +F + W + Sbjct: 2 KGEVRVITQEIWADVLGYVRKNISEVEYHTWFAPVKNLGVQDGALVIGVRNSFAQEWFRK 61 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 YLE + + ++ + V LP+ + PS +P N++ +S L Sbjct: 62 HYLELLEDALRALGAQNPQISFQV----LPASQDALLLPSDPPPAPANSSPGRS---LPG 114 Query: 148 QTISPVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 Q S V L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ Sbjct: 115 QPPSQVPSESRQVLNPKYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGD 169 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ A+ + ++R P+ R+ Y++ E F +AIRD+ ++ R++DLLL Sbjct: 170 VGLGKTHLMHAVGHYIMERFPDKRIEYVSTESFTNELINAIRDDKTTQFRNRYRSVDLLL 229 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QFL GK Q EF H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ Sbjct: 230 VDDIQFLAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITD 289 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + ++E R +ILK E +++I +EVL +AR VT++ REL+GA ++V + Sbjct: 290 IQTPEFETRVAILK-----MNAEHNRIDIPQEVLELIARQVTSNIRELEGALMRVV---A 341 Query: 384 FAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 FA + + +A + LS+ V + K+ + ++ R VA H+ ++ + + R R VV Sbjct: 342 FASLNNVPFSRAVAAKALSN-VFAPQVVKVEMGEVLRAVATHFGLAPEVIRGSGRAREVV 400 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PRQVAMYL + +T S PEIG+ FG RDH+TV+HAV KV + + D L VE L+R Sbjct: 401 VPRQVAMYLIRELTDHSLPEIGQFFG-RDHSTVMHAVSKVSEQMSKDPELAATVEALRRQ 459 Query: 500 ISE 502 + + Sbjct: 460 LQD 462 >gi|227523339|ref|ZP_03953388.1| DNA-directed DNA replication initiator protein [Lactobacillus hilgardii ATCC 8290] gi|227089530|gb|EEI24842.1| DNA-directed DNA replication initiator protein [Lactobacillus hilgardii ATCC 8290] Length = 469 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 199/347 (57%), Gaps = 14/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F FI G N++A AA ++E Y NPLF + VGLGKTHL+QAI Sbjct: 134 LNPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLY-----NPLFFYGGVGLGKTHLMQAIG 188 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QGKLI 276 N ++ P V Y+T+E F F +AI+ N + RN+DLL++DD+QF Q + Sbjct: 189 NKRLEDHPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFAQKEGT 248 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L ++ KQ+V +DR P E+ L R+ SR G+ V + D E R +IL Sbjct: 249 QEEFFHTFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLETRIAIL 308 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAEIAD 394 K++ + L I E L ++A + ++ REL+GA + Q + PI T ++ Sbjct: 309 KSKAKLDN-----LTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKNEPI-TTDLVY 362 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L ++ I DIQ VA +++++ +DL +R++++V PRQ+AMYLS+ MT Sbjct: 363 EALKGLKLAKANNELSIMDIQNKVASYFHVTISDLKGKKRMKSIVIPRQIAMYLSREMTS 422 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P+IG+ FG +DHTTV+HA K+ ++++ D ++KE+ +K +S Sbjct: 423 NSLPKIGKEFGGKDHTTVIHACDKIAEVIKIDADIRKEISDIKTALS 469 >gi|81251088|gb|ABB69887.1| DNA replication initiator protein [Nitrosovibrio sp. FJI82] gi|81251092|gb|ABB69890.1| DNA replication initiator protein [Nitrosovibrio sp. RY3C] Length = 460 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 145/447 (32%), Positives = 243/447 (54%), Gaps = 21/447 (4%) Query: 55 YASWFQ--RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 + +W + RL H+ + L P F+ WIK+ +L I ++ ++ +R + ++ Sbjct: 24 FNTWIKPLRLDPSPGTHDELTLVAPNRFVMQWIKDNFLSHIERMAKKHFAR--DMHFQLK 81 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 PS K S + + + + +S +P L + S L+ F F +F+ G + Sbjct: 82 LADQPS--KMPGSAADSAAAESPSTLSPAPPFLANRAPKGNTPSRLNPAFTFDSFVTGKA 139 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N++A A +AE Y NPLFI+ VGLGKTHL+QAI N +++ +V Y+ Sbjct: 140 NQLARAGAIQVAERPGVAY-----NPLFIYGGVGLGKTHLIQAIGNLVLEQNSQAKVRYI 194 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 AE ++ A + + K ++DLLLIDD+QF GK Q EF + N+L+++ Sbjct: 195 HAEQYVSDVVRAYQHKAFDDFKQYYHSLDLLLIDDIQFFGGKSRTQEEFFYAFNALIEAH 254 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQV+ D P E+ ++ R+ SR G++V + + EMR +IL L +Q E K+ Sbjct: 255 KQVIITCDSYPKEISGMEERLVSRFGWGLTVAVEPPELEMRVAIL---LKKAQLE--KIE 309 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKM 409 ++E V +A+ + ++ REL+GA +++ F P L+ ++A E L L+ + +++ Sbjct: 310 LDESVAFFIAKHIRSNVRELEGALKRVLAYSRFTNHP-LSLDLAKEALKDLLAV-QNRQI 367 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 IE+IQ+ VA +Y I ++ S +R R V RPRQ+AM ++K +TP S P+IG FG RDH Sbjct: 368 SIENIQKTVADYYKIKVAEMYSKKRSRIVARPRQMAMAMAKELTPLSLPDIGEAFGGRDH 427 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELL 496 TTVLH RK+ ++ +D + ++ L Sbjct: 428 TTVLHGYRKIAELRASDPNINRDFNTL 454 >gi|195973856|gb|ACG63493.1| chromosomal replication initiator protein DnaA [Francisella noatunensis] Length = 434 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 129/331 (38%), Positives = 196/331 (59%), Gaps = 23/331 (6%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHL 212 FG PL ++VF +F+ G +N++A AA ++ +L NPLFI+ GLGKTHL Sbjct: 120 FGLPLKEKYVFDSFVVGDANKIARAAAMQVS------INPGKLHNPLFIYGGSGLGKTHL 173 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N + + PN R++Y +E F+ + ++IR + R+ D+L IDD+QF+ Sbjct: 174 MQAIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIA 233 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E Sbjct: 234 GKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLET 293 Query: 332 RFSIL-KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV----FRHSFAP 386 R +IL K + QK + E +A V T+ REL+GA N+++ F H P Sbjct: 294 RIAILLKKAYDLGQK------LPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHK-DP 346 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 T E+A L ++ E KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM Sbjct: 347 --TIEVAQACLRDVIKIQE-KKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAM 403 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 L++ +T S PEIG FG RDHTTV+HAV+ Sbjct: 404 SLARELTSHSLPEIGNAFGGRDHTTVMHAVK 434 >gi|227873171|ref|ZP_03991462.1| DNA-directed DNA replication initiator protein [Oribacterium sinus F0268] gi|227841002|gb|EEJ51341.1| DNA-directed DNA replication initiator protein [Oribacterium sinus F0268] Length = 381 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 216/350 (61%), Gaps = 17/350 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+SR+ F +F+ GSSN +A A + AE+ Y NPL+I+ GLGKTHL+Q++A Sbjct: 42 LNSRYTFDSFVVGSSNALAHAACVAAAEMPGEQY-----NPLYIYGGAGLGKTHLMQSVA 96 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN---LKDSLRNIDLLLIDDMQFLQGK 274 + +++ N ++ Y+T+E F+ F +IR+ ++ + R +D+LLIDD+QFL GK Sbjct: 97 HYILQQNKNAKIRYVTSETFINEFVDSIRNKNNISPAEFRRKYRELDVLLIDDIQFLIGK 156 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L D+ KQ++ A+D+PP ++++++ R+ SR + G++V + L D E R Sbjct: 157 EGTQEEFFHTFNALYDNRKQIIIASDKPPKKIDNIEERLLSRFEVGLTVDIQLPDVETRM 216 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAE 391 +IL+ + +E NI+ EV+ ++A + ++ REL+GA ++V + P+ T Sbjct: 217 AILRKK-----EELEGYNIDNEVIKYIADNIKSNVRELEGALTKVVAKSRLIKQPV-TLS 270 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ELL + E K++ + I +VA+H+ +S +DL+S R+ + +V PRQ+AMYL + Sbjct: 271 LAEELLKDNITPAEKKELTPKWIIEVVAEHHGLSLSDLVSKRKNKEIVIPRQIAMYLCRE 330 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT +G G RDH+T++H K+ K L T+ L+ +E+L++ IS Sbjct: 331 MTSIPLNTVGELLGGRDHSTIIHGCDKISKELSTNEQLQSTIEVLRKKIS 380 >gi|82701136|ref|YP_410702.1| chromosomal replication initiator protein DnaA [Nitrosospira multiformis ATCC 25196] gi|123740823|sp|Q2YD61|DNAA_NITMU RecName: Full=Chromosomal replication initiator protein DnaA gi|81251041|gb|ABB69852.1| DNA replication initiator protein [Nitrosospira multiformis] gi|82409201|gb|ABB73310.1| chromosomal replication initiator protein DnaA [Nitrosospira multiformis ATCC 25196] Length = 476 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 150/472 (31%), Positives = 251/472 (53%), Gaps = 37/472 (7%) Query: 46 LKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +N++ + +W + L+ + L P F+ W+K+ +L IT++ + + Sbjct: 15 FENELSAQQFNTWIKPLRLQLSDDSPEPALRLIAPNRFVLQWVKDNFLSDITQMAENHFA 74 Query: 103 RIQGVEI----LVRSVALPSVEKT--ASSPSITKL----------SPINTNISKSPIILG 146 R +++ + + A PS + +S SIT + +P +T +K Sbjct: 75 RPVQLQLELAGQIPASASPSTGRNNGTASHSITAVFDAPTESAQKAPKDTKDTKD--AKE 132 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 KQ +P + L+ F F+TF+ G +N++A A +AE Y NP FI+ VG Sbjct: 133 KQEKNP---TRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFFIYGGVG 184 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QAI N +++ P +V Y+ +E ++ A + K ++DLLLID Sbjct: 185 LGKTHLIQAIGNFVVEQNPAAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLID 244 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G++V + Sbjct: 245 DIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVE 304 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + EMR +IL L + ED + ++E V +A+ + ++ REL+GA ++V F Sbjct: 305 PPELEMRVAIL---LKKALMED--IILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFT 359 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 LT ++A E L L+ + +++ IE+IQ+ VA +Y I ++ S +R R V RPRQ+ Sbjct: 360 GHALTLDLAREALKDLLAV-QNRQISIENIQKTVADYYKIKVAEMYSKKRSRVVARPRQM 418 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 419 AMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNTL 470 >gi|163790919|ref|ZP_02185342.1| chromosomal replication initiator protein DnaA [Carnobacterium sp. AT7] gi|159873761|gb|EDP67842.1| chromosomal replication initiator protein DnaA [Carnobacterium sp. AT7] Length = 358 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 128/349 (36%), Positives = 205/349 (58%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ AI Sbjct: 23 LNTKYTFDTFVIGKGNQMAHAAALVVAEEPGTIY-----NPLFFYGGVGLGKTHLMHAIG 77 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P+ RV Y+++E F F ++I++ ++ R++DLLL+DD+QF K Sbjct: 78 HQMLLLNPDARVKYVSSETFANDFINSIQNKTQEKFRNEYRSVDLLLVDDIQFFADKEGT 137 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L D KQ+V +DR P+E+ L R+ SR G+SV + D E R +IL Sbjct: 138 QEEFFHTFNALYDDRKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRIAIL 197 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +L I + L ++A + ++ REL+GA LV ++A I +T + Sbjct: 198 RKKANAE-----RLEIPGDTLSYIAGQIDSNIRELEGA---LVRVQAYAAIESRDITTSL 249 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L ++ + + + I DIQ+ V+K+Y +S DL +R++++V PRQ+AMYLS+ + Sbjct: 250 AADALKSMLPSAKPTTLTILDIQQAVSKYYQLSIADLKGKKRIKSIVLPRQIAMYLSREL 309 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG +DHTTV+HA K+ L +D LK+E+ LK+ ++ Sbjct: 310 TSNSLPKIGAEFGGKDHTTVIHAYEKIVHALTSDDQLKQEITDLKKKLT 358 >gi|160893411|ref|ZP_02074196.1| hypothetical protein CLOL250_00960 [Clostridium sp. L2-50] gi|156864806|gb|EDO58237.1| hypothetical protein CLOL250_00960 [Clostridium sp. L2-50] Length = 454 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 136/460 (29%), Positives = 251/460 (54%), Gaps = 25/460 (5%) Query: 54 VYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI--TKLF--QEEHSRIQGVEI 109 + + W + L H + H+ + T WIK L ++ KL+ +E +G+E Sbjct: 5 ILSKWDEILSLLETEHGLSHIVINT-----WIKPLKLYSVEGKKLYFTIDEQMGARGIEF 59 Query: 110 LVRSVA----LPSVEKTASSPSITKLSPINTNISKSP--IILGKQTISPVFGSPLDSRFV 163 + + + + S+ + SI + + +N+ I+ ++ + S L ++ Sbjct: 60 INKKMYDMFLVTSIREVLQDDSIEVVIDLESNLKNDSKEIVTSEEYNEAITKSNLYPKYT 119 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TF+ G SN++A A +A DS G + NPLF++ GLGKTHL+Q+IA+ ++ Sbjct: 120 FETFVVGESNKLA--HATCLAVADSPGLD--KFNPLFLYGGAGLGKTHLMQSIAHYILQH 175 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 N++V+Y+ + F AI+ N ++ R +D+LLIDD+Q+L GK Q EF Sbjct: 176 NKNMKVLYVPSNKFTNEIVEAIKKNKTDEFREKYRTVDVLLIDDIQYLIGKESTQQEFFD 235 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N+L D KQ++ ++D+PP E+++L+ R RSR + GV + + DYE R +ILKN++ + Sbjct: 236 TFNALHDEGKQIILSSDKPPKEIKTLEERFRSRFEWGVPIDIHAPDYETRMAILKNKVEM 295 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLV 401 + + NI++ +L ++A VT + REL+GA N++ + +T ++A +L ++ Sbjct: 296 NGYK----NISDNILEYIANNVTYNVRELEGALNKISVYAELGNVTITEDLAKNILKDMI 351 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + + + I V++H NIS +D+ S++R + V RQ++MYL + T + IG Sbjct: 352 SKETNVAITPDLIINTVSEHLNISVDDIKSSKRSQDVANARQISMYLCRKFTTKGLKTIG 411 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG +DH+TVL +++VE+ + D + ++++ + +S Sbjct: 412 DVFGGKDHSTVLSNIKRVEERIANDPEYAETIDVIMKKLS 451 >gi|190572092|ref|YP_001969937.1| chromosomal replication initiation protein [Stenotrophomonas maltophilia K279a] gi|254522083|ref|ZP_05134138.1| chromosomal replication initiator protein DnaA [Stenotrophomonas sp. SKA14] gi|226735852|sp|B2FUW1|DNAA_STRMK RecName: Full=Chromosomal replication initiator protein DnaA gi|190010014|emb|CAN85568.1| putative chromosomal replication initiator protein DnaA [Stenotrophomonas maltophilia K279a] gi|219719674|gb|EED38199.1| chromosomal replication initiator protein DnaA [Stenotrophomonas sp. SKA14] Length = 443 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 157/471 (33%), Positives = 246/471 (52%), Gaps = 50/471 (10%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL-------- 96 RL+ + P+ +W + L+ + ++V L P F+ ++ YL I +L Sbjct: 10 RLEAEFPPEDVHTWLKPLQADLRVDSLV-LYAPNAFIVDQVRELYLARIRELLAHFAGFS 68 Query: 97 --FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F E SR + VE V+ PS ++S P + F Sbjct: 69 DVFLEIGSRPRPVEAQNAPVSTPSA-----------------HVSSEPQV--------PF 103 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 LD+ + F+ F+EG SN++ L AA Q+ + + NPL ++ GLGKTHL+ Sbjct: 104 AGNLDNHYTFANFVEGRSNQLGLAAAFQAAQKPGDRAH-----NPLLLYGGTGLGKTHLM 158 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A NA + P +V+YL +E F A+++ K + +D LLIDD+QF G Sbjct: 159 FAAGNAMRQANPGAKVLYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDALLIDDIQFFAG 218 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L D +Q++ DR P E+E L+ R++SRL G+SV + D+E R Sbjct: 219 KDRTQEEFFHTFNALFDGKQQIILTCDRYPREVEGLEARLKSRLAWGLSVAIEPPDFETR 278 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +I+ +++ + I ++V +A+ + ++ R+L+GA N L R +F +T E Sbjct: 279 AAIV-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLTARANFTGRAITTE 333 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K Sbjct: 334 FAQETLRDLLR-AQQQAISIPNIQKTVADYYGLQIKDLLSKRRTRSLARPRQVAMALTKE 392 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S PEIG F RDHTTVLHA R++ ++ETD L+++ + L R +SE Sbjct: 393 LTEHSLPEIGDAFAGRDHTTVLHACRQIRTLMETDGKLREDWDKLIRKLSE 443 >gi|313889534|ref|ZP_07823180.1| chromosomal replication initiator protein DnaA [Streptococcus pseudoporcinus SPIN 20026] gi|313122146|gb|EFR45239.1| chromosomal replication initiator protein DnaA [Streptococcus pseudoporcinus SPIN 20026] Length = 451 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 143/435 (32%), Positives = 232/435 (53%), Gaps = 52/435 (11%) Query: 89 YLETITKLFQEEHSR----IQGVEILVRSVA-----------LPSVEKTASSPSITKLSP 133 YL+ + +LF E++ + G EI +A +P ++ + + S ++P Sbjct: 45 YLDPMKELFWEKNLKDVILTAGFEIFNAQIAVDYQFEDDLEMMPGTQEGSQAFSSQNINP 104 Query: 134 INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + P+ S L+ ++ F FI+G NR A+ A+ ++A Y Sbjct: 105 L-----------------PLVKSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTY-- 145 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPLFI GLGKTHLL AI N+ + PN RV Y+TAE F+ F IR + L Sbjct: 146 ---NPLFIWGGPGLGKTHLLNAIGNSVLLDNPNARVKYITAENFINEFVIHIRLDTMDEL 202 Query: 254 KDSLRNIDLLLIDDMQFLQGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K+ RN+DLLLIDD+Q L K + Q EF + N+L ++ KQ+V +DR P L L+ Sbjct: 203 KEKFRNLDLLLIDDIQSLAKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEQ 262 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+ +R + G++V + D+E R +IL N++ ++ ++ + ++A ++ R+ Sbjct: 263 RLVTRFKWGLTVNITPPDFETRVAILTNKI-----QEYSFTFPQDTIEYLAGQFDSNVRD 317 Query: 371 LDGAFNQLVFRHSFAPI--LTAEIADELLSHLVNTGETKKMRI---EDIQRMVAKHYNIS 425 L+GA + +F I +T +IA E + +T KM I E+IQ V K Y ++ Sbjct: 318 LEGALKDISLVANFKQIDRITVDIAAEAIR--ARKQDTPKMTIIPIEEIQTQVGKFYGVT 375 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ + +R + +V RQVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ Sbjct: 376 VKEIKATKRTQDIVLARQVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIVE 435 Query: 486 DITLKKEVELLKRLI 500 D +L+ E+E +K I Sbjct: 436 DESLRIEIETIKNKI 450 >gi|269791620|ref|YP_003316524.1| chromosomal replication initiator protein DnaA [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099255|gb|ACZ18242.1| chromosomal replication initiator protein DnaA [Thermanaerovibrio acidaminovorans DSM 6589] Length = 447 Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 148/449 (32%), Positives = 243/449 (54%), Gaps = 34/449 (7%) Query: 52 PDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV 111 P +W + + ++ L VP F+K I++R+L + +L + + VE+ V Sbjct: 29 PGAAGTWLKTCLPLEISGGMLVLDVPNVFIKEQIQSRFLLPLKELVRA-LGVAEDVELKV 87 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 S P+ +K A + ++ P+ + ++P +VF F+ G Sbjct: 88 GSEIRPNEQKRAEAAAM-------------PLQSQRGGLNP--------NYVFDNFVVGK 126 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SNR+A A+ + AE Y NPLFI VGLGKTHL+ AI + QP +VVY Sbjct: 127 SNRLAHAASLAAAESPGVAY-----NPLFIWGGVGLGKTHLMHAIGHYVCDNQPGAKVVY 181 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 +++E F SAI++N + K R++D+LLIDD+QFL K Q EF H NSL D+ Sbjct: 182 VSSEKFTNELISAIQNNRTQDFKAKYRSVDVLLIDDIQFLADKESTQEEFFHTFNSLHDA 241 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQVV ++DRPP +++ ++ R+ SR + G+ + D E R +IL+ + + E P Sbjct: 242 KKQVVISSDRPPKDIQRVEERLVSRFEWGLVTDIQPPDLETRVAILQKKAEMRGYEVP-- 299 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKM 409 E+V+ +A+ + ++ REL+GA N++V +++ E A E L ++ + Sbjct: 300 ---EDVIFFLAQNIPSNIRELEGALNRVVACSELNGEVISVENAAEWLKDIIRNVMRGPV 356 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I+ IQ +VA+ + + +DLLS +R + RQVAMYL + T S +IG F +DH Sbjct: 357 SIDLIQHLVAESFGMPVDDLLSTKRTSDLALARQVAMYLCREHTEASLQQIGYAFNKKDH 416 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKR 498 TTVLHA RK++++L+TD+ +K V+ +++ Sbjct: 417 TTVLHACRKIDELLKTDLRVKSVVDNVRK 445 >gi|15674251|ref|NP_268424.1| chromosomal replication initiation protein [Streptococcus pyogenes M1 GAS] gi|19745202|ref|NP_606338.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS8232] gi|21909537|ref|NP_663805.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS315] gi|28894913|ref|NP_801263.1| chromosomal replication initiation protein [Streptococcus pyogenes SSI-1] gi|50913347|ref|YP_059319.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS10394] gi|56808865|ref|ZP_00366576.1| COG0593: ATPase involved in DNA replication initiation [Streptococcus pyogenes M49 591] gi|71902668|ref|YP_279471.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS6180] gi|71909815|ref|YP_281365.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS5005] gi|94987632|ref|YP_595733.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS9429] gi|94989510|ref|YP_597610.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS10270] gi|94991498|ref|YP_599597.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS2096] gi|139472889|ref|YP_001127604.1| chromosomal replication initiation protein [Streptococcus pyogenes str. Manfredo] gi|61212508|sp|Q5XEM7|DNAA_STRP6 RecName: Full=Chromosomal replication initiator protein DnaA gi|61222629|sp|P0A3A4|DNAA_STRP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|61222631|sp|P0A3A5|DNAA_STRP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|61222632|sp|P0A3A6|DNAA_STRP8 RecName: Full=Chromosomal replication initiator protein DnaA gi|122987157|sp|Q1JP60|DNAA_STRPC RecName: Full=Chromosomal replication initiator protein DnaA gi|123382367|sp|Q1JEA5|DNAA_STRPB RecName: Full=Chromosomal replication initiator protein DnaA gi|123382466|sp|Q1JJA7|DNAA_STRPD RecName: Full=Chromosomal replication initiator protein DnaA gi|123761459|sp|Q48VX2|DNAA_STRPM RecName: Full=Chromosomal replication initiator protein DnaA gi|166215363|sp|A2RBX3|DNAA_STRPG RecName: Full=Chromosomal replication initiator protein DnaA gi|8037923|gb|AAF71535.1|AF255728_1 chromosomal initiator protein DnaA [Streptococcus pyogenes] gi|13621326|gb|AAK33146.1| Chromosomal initiator protein [Streptococcus pyogenes M1 GAS] gi|19747291|gb|AAL96837.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS8232] gi|21903717|gb|AAM78608.1| chromosomal initiator protein [Streptococcus pyogenes MGAS315] gi|28810158|dbj|BAC63096.1| chromosomal initiator protein [Streptococcus pyogenes SSI-1] gi|50902421|gb|AAT86136.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS10394] gi|71801763|gb|AAX71116.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS6180] gi|71852597|gb|AAZ50620.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS5005] gi|94541140|gb|ABF31189.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS9429] gi|94543018|gb|ABF33066.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes MGAS10270] gi|94545006|gb|ABF35053.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes MGAS2096] gi|134271135|emb|CAM29345.1| chromosomal replication initiator protein [Streptococcus pyogenes str. Manfredo] Length = 451 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 206/355 (58%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+S++ F FI+G NR A+ A SIA ++ G T NPLFI GLGKTH Sbjct: 106 PTVTSDLNSKYSFENFIQGDENRWAVAA--SIAVANTPGTT---YNPLFIWGGPGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 161 LLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSL 220 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 221 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 281 FETRVAILTNKI-----QEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID 335 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +IA E + G + + IE+IQ V K Y ++ ++ + +R + +V RQVA Sbjct: 336 TITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVA 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 396 MFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKI 450 >gi|306826410|ref|ZP_07459724.1| DNA-directed DNA replication initiator protein [Streptococcus pyogenes ATCC 10782] gi|304431405|gb|EFM34400.1| DNA-directed DNA replication initiator protein [Streptococcus pyogenes ATCC 10782] Length = 451 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 206/355 (58%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+S++ F FI+G NR A+ A SIA ++ G T NPLFI GLGKTH Sbjct: 106 PTVTSDLNSKYSFENFIQGDENRWAVAA--SIAVANTPGTT---YNPLFIWGGPGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 161 LLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSL 220 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 221 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 281 FETRVAILTNKI-----QEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID 335 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +IA E + G + + IE+IQ V K Y ++ ++ + +R + +V RQVA Sbjct: 336 TITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLARQVA 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 396 MFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKI 450 >gi|311748263|ref|ZP_07722048.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1] gi|126576758|gb|EAZ81006.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1] Length = 472 Score = 226 bits (577), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 141/461 (30%), Positives = 254/461 (55%), Gaps = 19/461 (4%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT---KLFQEEHS 102 ++ V +++WF+ + + + + VP+ F W+++ Y++ + K + Sbjct: 16 IEQHVNEQSFSTWFKPINPVKLEGTNLTIQVPSQFFFEWLEDNYVQVLKLAIKTTLGQGG 75 Query: 103 RIQGVEILVR--SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 R++ ++ R S P V + K + ++P + + S L+ Sbjct: 76 RLEYAVVVDRGNSSNQPYVVSYPQGNNSKKGAAAPVEEQRTPFEMKSLDAEALTKSNLNP 135 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 + FS +IEG NR+A +A ++A G T+ NPL ++ VGLGKTHL+QAI N Sbjct: 136 NYTFSAYIEGDCNRLARSAGFAVAT--KPGITS--FNPLMVYGGVGLGKTHLVQAIGN-E 190 Query: 221 IKRQPNLR-VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 IK P + V+Y+++E F+ +F +I+D + + +D+L+IDD+QFL GK Q Sbjct: 191 IKNGPEDKFVLYVSSEKFVNQFMDSIKDGNVKSFTNFYMQVDVLIIDDIQFLAGKDRTQE 250 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 F H+ N L + KQ++ +D PP +L+ L+ R+ SR + G++ L + D+E R +I++ Sbjct: 251 MFFHIFNHLHQNKKQIIMTSDCPPRDLKGLEERLLSRFKWGLTADLQMPDFETRVAIIRR 310 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELL 397 ++ + + I ++V+ ++A TV T+ REL+G L+ S + + ++ E+A ++ Sbjct: 311 KM-----QSEGIFIPDDVVEYLAYTVDTNVRELEGILISLIAHASLSRVEISLELAKTVM 365 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 +++ ET+ + I+ IQ+ V+++Y I+ +DL + R + +V RQVAMY SK T S Sbjct: 366 KNIIKDIETE-VGIDYIQKTVSEYYGIALDDLKAKTRKKEIVVARQVAMYFSKEFTNHSL 424 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 IG FG RDH+TV+HAV+ V ++ETD + + V LK+ Sbjct: 425 KSIGYHFGGRDHSTVIHAVQTVNDLMETDSSFRNAVNELKK 465 >gi|303228570|ref|ZP_07315397.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-134-V-Col7a] gi|303230659|ref|ZP_07317409.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-049-V-Sch6] gi|302514714|gb|EFL56706.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-049-V-Sch6] gi|302516749|gb|EFL58664.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-134-V-Col7a] Length = 539 Score = 226 bits (577), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 159/520 (30%), Positives = 254/520 (48%), Gaps = 86/520 (16%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 K + P +Y+S L S+ +N +H+ V +F+K+ I+++ +T++KL + ++ G Sbjct: 18 KQTLPPAIYSSLSTSLIPMSIDNNSIHIGVMQSFIKSVIESQ--QTVSKLLTDAIKQVTG 75 Query: 107 VEI-LVRSVALPSVEKTASSPSITKLSPINT------------------NISKSPIILGK 147 E+ +V P + ++P + NT NI K K Sbjct: 76 KELNMVLLDLFPQKDDVPTAPHVADTFTENTAENTSTNTIENTVVSDVDNIDKKSSKPAK 135 Query: 148 QTI-------SPVFGSP------------------------------------------L 158 Q I +PV+ P L Sbjct: 136 QEIPYQEEFYTPVYADPVYIQRKEVDELIPDEPMFPVEQPQMVQTLQSTDIPIDLSSSQL 195 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 +S + F +I G++NR+ AAQ+++E Y NPLFI+ GLGKTHL+ AI N Sbjct: 196 NSGYRFDNYITGNANRIPFGAAQNVSEHPGGDY-----NPLFIYGPSGLGKTHLMHAIGN 250 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQ 277 A ++R PNL+V+ T+E FM F +IR +++ RNID+LLIDD+QFL+ K + Sbjct: 251 AIVERYPNLKVMCTTSEKFMNLFIESIRKRQGELFRNTFRNIDVLLIDDIQFLENKEGTK 310 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF + N LLD+ KQ+V +D P++++ + R+RSR Q G + D E R +ILK Sbjct: 311 TEFFNTFNELLDNNKQIVLTSDTMPNDMDQFEERLRSRFQAGYVATMENPDLETRIAILK 370 Query: 338 NRLAISQKEDPK---LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF---APILTAE 391 A+ +KE+ K L I+ + + +VA + R L GAFN+L+ S + E Sbjct: 371 ---ALVEKENNKNRNLVIDNDAINYVALQFDENIRVLQGAFNKLIGTASLEQRTSSIDLE 427 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + LS ++ T + IE IQ ++ ++NI + DLL +R PRQ+AMYL + Sbjct: 428 YTKKTLSDIITTERVTLIDIESIQDFISTYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRD 487 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 + S+P+I F RDHTT+LHA K+ K ++ + K+ Sbjct: 488 VINESYPQIAAAFS-RDHTTILHAYDKISKEIDKNPETKQ 526 >gi|198417057|gb|ACH87840.1| DnaA [Francisella noatunensis subsp. noatunensis] Length = 433 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 205/365 (56%), Gaps = 25/365 (6%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 PS +KTAS ++ +I K FG PL ++VF +F+ G +N++A Sbjct: 90 PSSKKTASQELF--------GFDEAMLITDKDDQEYSFGLPLKEKYVFDSFVVGDANKIA 141 Query: 177 LTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 AA ++ +L NPLFI+ GLGKTHL+QAI N + + PN R++Y +E Sbjct: 142 RAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNARIIYTNSE 195 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ + ++IR + R+ D+L IDD+QF+ GK EF H N+L ++ KQ+ Sbjct: 196 QFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGKEGTAQEFFHTFNALYENGKQI 255 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL-KNRLAISQKEDPKLNIN 353 + +D+ P+E+E L+ R+ SR G++V + + D E R +IL K + QK + Sbjct: 256 ILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRIAILLKKAYDLGQK------LP 309 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIE 412 E +A V T+ REL+GA N+++ F T E+A ++ E KK++I+ Sbjct: 310 NETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACSRDVIKIQE-KKVKID 368 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV Sbjct: 369 NIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTV 428 Query: 473 LHAVR 477 +HAV+ Sbjct: 429 MHAVK 433 >gi|189218018|ref|YP_001938660.1| Chromosomal replication initiator protein dnaA, ATPase [Methylacidiphilum infernorum V4] gi|254777907|sp|B3DWG6|DNAA_METI4 RecName: Full=Chromosomal replication initiator protein DnaA gi|189184876|gb|ACD82061.1| Chromosomal replication initiator protein dnaA, ATPase [Methylacidiphilum infernorum V4] Length = 454 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 155/483 (32%), Positives = 256/483 (53%), Gaps = 48/483 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 L+ + I+ + L+ + + WF ++ S+ ++ + L P + WI+ YL Sbjct: 4 LKTDLNLIWNDICLELQKVISKEAIEKWFVPIELLSIENDQLLLKAPDPIYQYWIEENYL 63 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSI--TKLSPINTNISKSPII--LG 146 S++ G + A +P I + SP N + I L Sbjct: 64 -----------SQLIGASFRI----------LAKNPKIIFAQESPGNGEKATGKKIKSLP 102 Query: 147 KQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 ++ S +F S L+++F F F+ G ++ A AA+++AE + Y NPLF++ V Sbjct: 103 REDKSSIFESKGLNTKFSFENFVVGPNSEFAAAAAKAVAESPAKAY-----NPLFLYGKV 157 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAI N +++ + V Y+T+E F F AI+ + R ID+LLI Sbjct: 158 GLGKTHLMQAIGNHIVEKNKWILVQYVTSEQFTNEFIEAIQKGSIGQFRKKYRQIDVLLI 217 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL GK Q EF H N L D +KQ+V + D PS L++L+ R+ SR + G++ + Sbjct: 218 DDIQFLAGKERSQEEFFHTFNCLFDGSKQIVLSGDEAPSSLQNLEKRLISRFEWGLTAEI 277 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 E+R +ILK++L ++ L+I+E++L +A + T+ R+L+GA N+L ++ Sbjct: 278 LPPGIEVRLAILKHKL-----KNYSLSIDEKILEFIAERIKTNVRQLEGALNRLC---AY 329 Query: 385 API-----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 A I +T E LL L++ +K + IE IQ+ V + Y+I +D++S RR+ + Sbjct: 330 ASIHKEGKITLEETQSLLKDLISLQPSKTITIEMIQKRVCEAYDIRFSDMVSKRRISAIA 389 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PR VAMYL++ +T S +IG FG RDH TVLHA R + + + D L +L+K++ Sbjct: 390 LPRMVAMYLARRLTNLSLSQIGENFGGRDHGTVLHAQRTISEKMSKDPDL---AQLIKKI 446 Query: 500 ISE 502 + Sbjct: 447 TEQ 449 >gi|195973854|gb|ACG63492.1| chromosomal replication initiator protein DnaA [Francisella noatunensis] Length = 434 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 205/365 (56%), Gaps = 25/365 (6%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 PS +KTAS ++ +I K FG PL ++VF +F+ G +N++A Sbjct: 91 PSSKKTASQELF--------GFDEAMLITDKDDQEYSFGLPLKEKYVFDSFVVGDANKIA 142 Query: 177 LTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 AA ++ +L NPLFI+ GLGKTHL+QAI N + + PN R++Y +E Sbjct: 143 RAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNARIIYTNSE 196 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ + ++IR + R+ D+L IDD+QF+ GK EF H N+L ++ KQ+ Sbjct: 197 QFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGKEGTAQEFFHTFNALYENGKQI 256 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL-KNRLAISQKEDPKLNIN 353 + +D+ P+E+E L+ R+ SR G++V + + D E R +IL K + QK + Sbjct: 257 ILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRIAILLKKAYDLGQK------LP 310 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIE 412 E +A V T+ REL+GA N+++ F T E+A ++ E KK++I+ Sbjct: 311 NETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACSRDVIKIQE-KKVKID 369 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV Sbjct: 370 NIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTV 429 Query: 473 LHAVR 477 +HAV+ Sbjct: 430 MHAVK 434 >gi|268318563|ref|YP_003292219.1| Chromosomal replication initiator protein dnaA [Lactobacillus johnsonii FI9785] gi|262396938|emb|CAX65952.1| Chromosomal replication initiator protein dnaA [Lactobacillus johnsonii FI9785] Length = 454 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 205/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 118 LTSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +P+ +VVY+ +E F+ F ++I++ + ++ RN DLLL+DD+QF K I Sbjct: 173 HQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQVEFRNKYRNCDLLLVDDIQFFSKKEGI 232 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 233 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAIL 292 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I++ L ++A V T+ REL+GA LV + A I + ++ Sbjct: 293 RKKA-----ETDGLAIDDSTLDYIASQVDTNIRELEGA---LVKVQAHATIEREDINVDL 344 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ + Sbjct: 345 AKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSREL 404 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 405 TDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 452 >gi|89891636|ref|ZP_01203140.1| chromosomal DNA replication initiator DnaA [Flavobacteria bacterium BBFL7] gi|89516183|gb|EAS18846.1| chromosomal DNA replication initiator DnaA [Flavobacteria bacterium BBFL7] Length = 475 Score = 226 bits (576), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 147/471 (31%), Positives = 253/471 (53%), Gaps = 27/471 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE----TITKLFQEEH 101 +K+ + P Y +WF+ +K + + + VP+ F W++ Y++ +T+ E Sbjct: 16 IKDNINPQAYKTWFEPIKPVKLTETALSIQVPSRFFYEWLEEHYIKLLKTALTRELGEGA 75 Query: 102 SRIQGVEILVRSVAL-PSVEKTASSP-SITKLSPINTNI-SKSP------IILGKQTISP 152 I +++ + P EK SS SI ++ + SKSP II G + + Sbjct: 76 KLIYAIKMENTLKGMEPFTEKIPSSNRSIQSSQSVDAPVRSKSPELKNPFIIPGIRNVK- 134 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ + F +F+EG SNR+A +A ++A + G T+ NPL I VGLGKTHL Sbjct: 135 -IESQLNPSYNFDSFLEGDSNRLARSAGMAVA--NKPGGTS--FNPLLIFGGVGLGKTHL 189 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI + P+ +Y++AE F ++ ++R N + + +D+L++DD+QF Sbjct: 190 AHAIGVGIKENYPDKTALYISAEKFTQQYIESVRKNNRNDFIHFYQIVDVLIVDDIQFFA 249 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + G+S L DYE Sbjct: 250 GKASTQDVFFHIFNHLHQNGKQVILTSDKKPVDMQDIEQRLLSRFKWGLSAELNHPDYET 309 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R SI+KN+L E ++++++ ++A + T+ REL+GA L+ SF +T Sbjct: 310 RVSIIKNKLYRDGVE-----MDDDIIHYLADNIKTNIRELEGAIISLIAHSSFNRKDITI 364 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A +++ + V + +++ I+ IQ++V+ ++ + L S R R +V+ RQ+AMY SK Sbjct: 365 DLARKIVENYVKNTK-REISIDQIQQVVSDYFQMDVETLQSKTRKRHIVQARQLAMYFSK 423 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S IG + G RDH TVLHA + V+ + TD K VE L + ++ Sbjct: 424 KMTKASLASIGSQIGKRDHATVLHACKTVDNLASTDKQFNKYVEDLSKKLT 474 >gi|328468760|gb|EGF39731.1| chromosomal replication initiation protein [Lactobacillus helveticus MTCC 5463] Length = 455 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 134/348 (38%), Positives = 205/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 119 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAIG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 174 HQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFFAKKEGI 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 234 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 294 RRK-----AEAEGLVIDDNTLDYIASQVDTNIRELEGA---LVKVQAYATIERADINVNL 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ IS +L +RVR +V PRQ+AMYLS+ + Sbjct: 346 AREALVDLKLVQKNRGLQISKIQEVVANYFQISTAELKGKKRVRQIVVPRQIAMYLSREL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK++I Sbjct: 406 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQIKTDTEIKSAVFDLKQMI 453 >gi|42518085|ref|NP_964015.1| chromosomal replication initiator protein DnaA [Lactobacillus johnsonii NCC 533] gi|61212661|sp|Q74M34|DNAA_LACJO RecName: Full=Chromosomal replication initiator protein DnaA gi|41582369|gb|AAS07981.1| chromosomal replication initiator protein DnaA [Lactobacillus johnsonii NCC 533] gi|329666392|gb|AEB92340.1| chromosomal replication initiator protein DnaA [Lactobacillus johnsonii DPC 6026] Length = 454 Score = 226 bits (576), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 205/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 118 LNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +P+ +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF K I Sbjct: 173 HQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFFSKKEGI 232 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 233 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAIL 292 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I++ L ++A V T+ REL+GA LV + A I + ++ Sbjct: 293 RKKA-----ETDGLAIDDSTLDYIASQVDTNIRELEGA---LVKVQAHATIEREDINVDL 344 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ + Sbjct: 345 AKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSREL 404 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 405 TDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 452 >gi|297622253|ref|YP_003703687.1| chromosomal replication initiator protein DnaA [Truepera radiovictrix DSM 17093] gi|297163433|gb|ADI13144.1| chromosomal replication initiator protein DnaA [Truepera radiovictrix DSM 17093] Length = 444 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 151/452 (33%), Positives = 246/452 (54%), Gaps = 38/452 (8%) Query: 52 PDV-YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY---LETITKLFQEEHSRIQGV 107 P+V + +WF++++ + + + + VP +F + W+KN Y LE K R+ G Sbjct: 21 PEVEFRTWFKQVRPLGIENGVFMIGVPHSFARDWLKNHYSPVLEHALKDLGAASPRV-GF 79 Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTF 167 ++ V+ P+ E+ P I P T S + + L+ ++VFS F Sbjct: 80 QV----VSFPTTEQ----PDI--FQPQTTGDDSSQVKRPR----------LNPKYVFSNF 119 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 + G +N +A AA ++AE Y NPLFI+ GLGKTHL+ A+ +A +R P L Sbjct: 120 VVGPNNNLASAAALAVAEAPGRAY-----NPLFIYGDAGLGKTHLMHAVGHAVAERLPQL 174 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 + Y+T E F +AIR++ +D R++D+LL+DD+QF+ GK Q EF H N+ Sbjct: 175 YIEYVTTEAFTNDLINAIREDRMTAFRDRYRSVDVLLVDDVQFIAGKERTQEEFFHTFNA 234 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 L +S KQ++ ++DRPP ++ +L+ R+RSR + G+ + + E R +ILK E Sbjct: 235 LYESGKQIILSSDRPPKDIPTLENRLRSRFEWGLITDIQAPELETRIAILK-----MNAE 289 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGE 405 + I +V+ ++AR VT++ REL+GA +++ S + L + LS + E Sbjct: 290 YRGVKIPPDVIDYIARQVTSNIRELEGALVRVILYASMNQVELNRQTVAAALSDVYAPSE 349 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 + +E+I R A H+ DL S R +V PRQVAMYL + +T S+PEIG+ F Sbjct: 350 L-NLSMEEILRATAFHFEADAEDLRSKGRRHELVVPRQVAMYLMRELTSHSYPEIGQFFS 408 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 RDH+TV++AV+KV + L D L+ ++ +K Sbjct: 409 GRDHSTVVYAVQKVGEQLAKDRELEMRIQAIK 440 >gi|260101878|ref|ZP_05752115.1| DNA-directed DNA replication initiator protein [Lactobacillus helveticus DSM 20075] gi|260084306|gb|EEW68426.1| DNA-directed DNA replication initiator protein [Lactobacillus helveticus DSM 20075] Length = 500 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 134/348 (38%), Positives = 205/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 164 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAIG 218 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 219 HQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFFAKKEGI 278 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 279 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 338 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 339 RRK-----AEAEGLVIDDNTLDYIASQVDTNIRELEGA---LVKVQAYATIERADINVNL 390 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ IS +L +RVR +V PRQ+AMYLS+ + Sbjct: 391 AREALVDLKLVQKNRGLQISKIQEVVANYFQISTAELKGKKRVRQIVVPRQIAMYLSREL 450 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK++I Sbjct: 451 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQIKTDTEIKSAVFDLKQMI 498 >gi|299135923|ref|ZP_07029107.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX8] gi|298602047|gb|EFI58201.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX8] Length = 474 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 132/341 (38%), Positives = 202/341 (59%), Gaps = 13/341 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F +F+ GS N+ A AAQ++AE S Y NPLF++ VG+GKTHL+QAI Sbjct: 140 LNPRYQFDSFVIGSGNQFAHAAAQAVAERPSKAY-----NPLFVYGGVGMGKTHLMQAIG 194 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + RQP+ + Y++ E F +++R + +D R +D+LLIDD+QFL GK Sbjct: 195 HQVKLRQPHAAISYVSGEKFTNEMINSVRYDKMTGFRDKFRTVDVLLIDDIQFLAGKERT 254 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S KQ+V A+DRPP EL + R+RSR + G+ V + D E + +IL Sbjct: 255 QEEFFHTFNALHESMKQIVIASDRPPKELADFEDRLRSRFEWGLVVDIQPPDLETKVAIL 314 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 + + + Q P +V + +A V T+ REL+GA +L+ S + +T A + Sbjct: 315 QKKAELEQTVLPM-----DVALFIAGNVRTNVRELEGALVRLIAWCSLHGVEITLPTAQQ 369 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++T + +K+ IE IQR VA+++ + +L R +V PRQ+AMYL+K MT Sbjct: 370 CLKQFIDT-QVRKITIEAIQRAVAENFGMRVAELKQKNNSRQIVVPRQIAMYLAKQMTEA 428 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S PEIGR+FG + HTTV+H++ K+++ D L + V L Sbjct: 429 SLPEIGRQFGGKHHTTVMHSIAKIDEQRRNDKDLNRTVNKL 469 >gi|171462833|ref|YP_001796946.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192371|gb|ACB43332.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 474 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 149/470 (31%), Positives = 241/470 (51%), Gaps = 38/470 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETITKLFQEEHSR 103 L ++ P + +W Q L S + + L++ P F WIK + + +L + R Sbjct: 26 LSRELSPQQFKTWIQPLILLSFVESDDSLTIGAPNRFKLDWIKKTFADRFQELATQYFGR 85 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-------- 155 V + A P+ L+P NT I + P + + + PV Sbjct: 86 PINVGFTLALEANPN-----------NLAP-NTTIQEPPQSVVIEALEPVISVEDSSFEI 133 Query: 156 ---SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F TF+ G +N++A A+ +A Y NP+F++ VGLGKTHL Sbjct: 134 EDHSKLNPNLTFETFVTGKANQLARAASIQVAHNPGTSY-----NPMFLYGGVGLGKTHL 188 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI N +K +PN R+ Y+ AE ++ A + K ++DLLLIDD+QF Sbjct: 189 IHAIGNHLLKEKPNARIRYIHAEQYVSDVVRAYQQKAFDRFKRYYHSLDLLLIDDIQFFS 248 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF + +LL + QV+ D P E+ +D R+ SR G++V + + EM Sbjct: 249 GKSRTQEEFFYAFEALLSNKSQVIITGDTYPKEMAGIDDRLISRFDSGLTVAIEPPELEM 308 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTA 390 R +IL + AI + + ++E+V VA+ + ++ REL+GA + L F +T Sbjct: 309 RVAILMKK-AIGEG----IPMSEDVAFFVAKHLRSNVRELEGALRKILAFVRFHGREVTI 363 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A L L++ + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AM+++K Sbjct: 364 EVARTALKDLLSI-QNRQISVENIQKAVADFYSIKVADMYSKKRPANIARPRQIAMFMAK 422 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T +S PEIG FG RDHTTVLHAVRK+ D L E+ ++++ + Sbjct: 423 ELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSHDSQLNHEIHVIEQTL 472 >gi|116628684|ref|YP_813856.1| DNA replication ATPase initiation [Lactobacillus gasseri ATCC 33323] gi|116094266|gb|ABJ59418.1| DNA replication ATPase initiation [Lactobacillus gasseri ATCC 33323] Length = 464 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 205/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 128 LNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 182 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +P+ +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF K I Sbjct: 183 HQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFFSKKEGI 242 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 243 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAIL 302 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I++ L ++A V T+ REL+GA LV + A I + ++ Sbjct: 303 RKK-----AETDGLAIDDSTLDYIASQVDTNIRELEGA---LVKVQAHATIEREDINVDL 354 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ + Sbjct: 355 AKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSREL 414 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 415 TDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 462 >gi|229826864|ref|ZP_04452933.1| hypothetical protein GCWU000182_02248 [Abiotrophia defectiva ATCC 49176] gi|229788482|gb|EEP24596.1| hypothetical protein GCWU000182_02248 [Abiotrophia defectiva ATCC 49176] Length = 457 Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 124/355 (34%), Positives = 202/355 (56%), Gaps = 21/355 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F TF+ G +NR+ AA S+AE + NPLFI+ VGLGKTHL+ +IA Sbjct: 112 LNPNYTFDTFVVGDNNRLVTAAAISVAENPGTNW-----NPLFIYGGVGLGKTHLMHSIA 166 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDN--CALNLKDSLRNIDLLLIDDMQFLQGK- 274 + ++ Q + RV+Y+T+E F AI++ + + RNID LLIDD+QF+ GK Sbjct: 167 HYILENQADARVLYVTSEQFTNEVIEAIKEGVLASKEFRKKYRNIDALLIDDIQFVIGKE 226 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 + EF H N L + K+++ ++DRPP + ++ RI+SR G+ + DYE R + Sbjct: 227 RTEEEFFHTFNELYQAGKRIIISSDRPPKDFTDIEDRIKSRFGSGMLSEINPPDYETRMA 286 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---LTAE 391 ILK R + + N+++E+L ++A V ++ REL+GA+ ++ + + T + Sbjct: 287 ILKKRCELENE-----NLSDEILDYIATNVNSNIRELEGAYKKVTALNKLVNVNTEATLD 341 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 IA L ++N + I+ I +VA HY +S + L S R V PRQ+ MYL K Sbjct: 342 IAKNALKDIINPNTKNVITIDSIIDVVASHYELSIDQLCSTNRSNNVAYPRQIIMYLCKQ 401 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI-----TLKKEVELLKRLIS 501 +TP S EI + G +DH+TV+H ++K+E+ LE + L +++++ +LIS Sbjct: 402 LTPASLKEIASKLGKKDHSTVVHGIKKIEEDLEAEKKANKNDLSNKLDVITKLIS 456 >gi|227889156|ref|ZP_04006961.1| DNA-directed DNA replication initiator protein [Lactobacillus johnsonii ATCC 33200] gi|227850385|gb|EEJ60471.1| DNA-directed DNA replication initiator protein [Lactobacillus johnsonii ATCC 33200] Length = 464 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 205/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 128 LNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 182 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +P+ +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF K I Sbjct: 183 HQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFFSKKEGI 242 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 243 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAIL 302 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I++ L ++A V T+ REL+GA LV + A I + ++ Sbjct: 303 RKK-----AETDGLAIDDSTLDYIASQVDTNIRELEGA---LVKVQAHATIEREDINVDL 354 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ + Sbjct: 355 AKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSREL 414 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 415 TDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 462 >gi|332523224|ref|ZP_08399476.1| chromosomal replication initiator protein DnaA [Streptococcus porcinus str. Jelinkova 176] gi|332314488|gb|EGJ27473.1| chromosomal replication initiator protein DnaA [Streptococcus porcinus str. Jelinkova 176] Length = 451 Score = 226 bits (575), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 131/357 (36%), Positives = 205/357 (57%), Gaps = 20/357 (5%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P+ S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLGKTH Sbjct: 106 PLVKSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN RV Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 161 LLNAIGNSVLLDNPNARVKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSL 220 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 221 AKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEQRLVTRFKWGLTVNITPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 281 FETRVAILTNKI-----QEYSFTFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID 335 Query: 388 -LTAEIADELLSHLVNTGETKKMRI---EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T +IA E + +T KM I E+IQ V K Y ++ ++ + +R + +V RQ Sbjct: 336 KITVDIAAEAIR--ARKQDTPKMTIIPIEEIQTQVGKFYGVTVKEIKATKRTQDIVLARQ 393 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 VAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 394 VAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIVEDESLRIEIETIKNKI 450 >gi|224372071|ref|YP_002606443.1| chromosomal replication initiator protein DnaA [Nautilia profundicola AmH] gi|254777909|sp|B9L735|DNAA_NAUPA RecName: Full=Chromosomal replication initiator protein DnaA gi|223588880|gb|ACM92616.1| chromosomal replication initiator protein DnaA [Nautilia profundicola AmH] Length = 436 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/473 (32%), Positives = 247/473 (52%), Gaps = 53/473 (11%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETIT 94 SIFT + LK++ + Y + + L+F HL + P F+ ++K +YL I+ Sbjct: 2 SIFTKIKKSLKSENLVN-YNKFIKNLEFDEKNSTSTHLIIKAPNIFIANFVKRKYLNKIS 60 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +L+++E T P K+ + IS P+ + ++ I P Sbjct: 61 ELYEKE---------------------TGIKP---KIDIVTKEISHRPLTI-EEIIEPTT 95 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L + F +FI G SN+ A TAA+S+AE Y NPLFI+ VGLGKTHLLQ Sbjct: 96 PSVLIPEYTFESFIVGPSNQFAYTAAKSVAENPGKNY-----NPLFIYGGVGLGKTHLLQ 150 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + +L V+Y+T+E FM F IR + RN D+LLIDD+QF GK Sbjct: 151 AIGNY---LKSSLNVLYVTSEQFMNEFTENIRMKTPERFHEKYRNCDVLLIDDVQFFAGK 207 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N L + KQ+ ADRPP +L L R+RSR + G+ V + + E + Sbjct: 208 ERTQEEFFHTFNELYNQKKQICLTADRPPKKLYDLVDRLRSRFEAGLIVDIQPPELETKI 267 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL----- 388 I++ + ++ + + EE++ ++A + ++ RE++G ++ ++ + IL Sbjct: 268 EIIRKKCELNG-----IYLPEEIIEYIATKLDSNIREIEGMITKI---NAMSKILGISEI 319 Query: 389 TAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T + A + L H+ + E + +EDI +++AK +NI ++++S R + +V R+ A+Y Sbjct: 320 TLDFAKQALKEHIKDKKEV--ITLEDIIKLIAKEFNIKPSEIVSKSRNKNIVAARRCAIY 377 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ T S P I + FG RDH+ V HA++ K L+ D + ++E LK I Sbjct: 378 LAREFTKESTPIIAKYFGLRDHSAVSHAIKSFNKKLKEDSEFRIKIEELKNKI 430 >gi|237749314|ref|ZP_04579794.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes OXCC13] gi|229380676|gb|EEO30767.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes OXCC13] Length = 459 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 239/457 (52%), Gaps = 31/457 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E + S+L++++ P Y++W + L I+ ++ P F W+K +Y + IT Sbjct: 2 EKFWQSCLSQLESELTPQQYSAWIKPLVPLDYKDGILRVAAPNRFKLDWVKTQYADRITS 61 Query: 96 L---FQEEHSRIQ-----GVEILVRSVALPSVEKTAS-SPSITKLSPINTNISKSPIILG 146 L F E +Q G S PS K PS T + +++S +P Sbjct: 62 LACQFLESTVDVQFMLNPGTRSASPSKPAPSQPKPEPVMPSETAETSQRSHVSDTPT--R 119 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 +Q S ++ F +F+ G +N++A AA +A Y NPL++ VG Sbjct: 120 EQ-------SRINVEMTFDSFVTGKANQLARAAAIQVANNPGVSY-----NPLYLFGGVG 167 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI N + P+ ++ Y+ AE ++ +A + + K ++D+LLID Sbjct: 168 LGKTHLIHAIGNQVLADTPSAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDMLLID 227 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + Sbjct: 228 DIQFFSGKSRTQEEFFYAFEALIAARKQIIITSDTYPKEISGMDDRLTSRFDSGLTVAIE 287 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSF 384 + EMR +IL I + + ++++V VA+ + ++ REL+GA + L F Sbjct: 288 PPELEMRVAIL-----IKKACQEGIQLSDDVAFFVAKHLRSNVRELEGALRKILAFSRFH 342 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T E+ E L L+N + +++ +E+IQ+ VA + I D+ S RR + RPRQ+ Sbjct: 343 GRDITIELTKEALKDLLNV-QNRQISVENIQKTVADFFRIKVADMYSKRRPANIARPRQI 401 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 402 AMYLTKELTQKSLPEIGELFGGRDHTTVLHAVRKIAQ 438 >gi|332882720|ref|ZP_08450331.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679222|gb|EGJ52208.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 473 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 152/472 (32%), Positives = 245/472 (51%), Gaps = 29/472 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL----ETITKLFQEEH 101 +K+ + + +WF + ++ + + VP+ F+ W+++ Y+ +T E Sbjct: 16 IKDNIDEQPFLTWFAPIVPVTLEGKTLKIKVPSQFVYEWLEDNYIGLLKSAMTYTLGEGA 75 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 I ++ LV LPS + P + K S +K P + I + +D + Sbjct: 76 RLIYIIDSLVDKKQLPSTNR----PELAKQSLTLATEAKDPELKNPFVIPGIREITVDPQ 131 Query: 162 FV----FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 F F+EG SNR+A +A IA + G T NPLFI VGLGKTHL AI Sbjct: 132 LNLHQNFDNFVEGESNRLARSAG--IAVANKPGGTA--FNPLFIFGGVGLGKTHLAHAIG 187 Query: 218 NASIKRQPNLRVVYLTAEYFMWRF--ASAIRDNCALNLKDSL---RNIDLLLIDDMQFLQ 272 ++ P +V+Y++AE F +F AS +D NL D + + ID+L++DD+QFL Sbjct: 188 VDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNNLNDFIHFYQLIDVLIVDDIQFLS 247 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK+ Q F H+ N L + KQV+ +D+ P +L ++ R+ SR + G+S L DY Sbjct: 248 GKVKTQDAFFHIFNHLHQTGKQVILTSDKAPVDLFDIEQRLLSRFKWGLSAELTTPDYNT 307 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R+ IL+N+ E I+E+++ ++A + T+ REL+G N L+ + +F + Sbjct: 308 RYKILQNKFYTDGAE-----ISEDIIAYLAENIRTNVRELEGVSNSLIAQAAFNRKEYSI 362 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A ++ V + + I+ IQ+++A ++N+ L S R R VV+ RQ+AM+ SK Sbjct: 363 ELAQSIIEKSVKNSQCD-LTIDHIQQIIADYFNLDIESLHSKTRKRNVVQARQLAMFFSK 421 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S IG + G RDH TVLHA + VE ++ETD KK V L+ S+ Sbjct: 422 KYTKSSLSTIGSQIGQRDHATVLHACKTVENLIETDREFKKYVSDLETKFSD 473 >gi|325846368|ref|ZP_08169337.1| chromosomal replication initiator protein DnaA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481552|gb|EGC84592.1| chromosomal replication initiator protein DnaA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 458 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 149/482 (30%), Positives = 251/482 (52%), Gaps = 48/482 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDV--YASWFQRLKFHSVLHNIVHLSVPTN-----FLKAWI 85 +N E I + ++K V PD+ Y +W LK + N ++L +P N F + W+ Sbjct: 1 MNLEYITNELKEKMKMNV-PDLQQYETWIGILKPLNKYDNTIYLEIPKNDTKFIFDQIWV 59 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 L+ I + S VEI+ + P+ + + N+ + Sbjct: 60 PQ--LQAILNDINKRESTSYKVEIVAKD-----------GPNYEDILTLGRNVDDN---- 102 Query: 146 GKQTISPVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 G+ ++ V P L+ +F F++G SN++AL A+QS+AE ++ + NPLFI+ Sbjct: 103 GQLRLNNVNRYPKPLLEKNNIFENFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIY 162 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+QAIA+ +K++ + V+YL++E F SA+R+N + R++D+ Sbjct: 163 GSSGLGKTHLMQAIAHEILKKRDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDM 222 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ K Q EF H L + KQ+V ++DRPP E++ L+ R+ SR G+ Sbjct: 223 LLIDDIQFIANKTGTQEEFFHTFEDLYNQGKQIVISSDRPPKEIKHLEERLVSRFGWGII 282 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLN--INEEVLMHVARTVTTSGRELDGAFNQLV 379 V + D+E R +IL QK+ +L ++ ++L ++A + T+ R+L+GA + Sbjct: 283 VDISKPDFETRVAIL-------QKKQDELGAVVDYKILEYIAENIETNIRDLEGALATSI 335 Query: 380 F-----RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 S+ + A + H + K++ EDIQ+ V+ Y++ DL R Sbjct: 336 ACAKSNNRSYVSLEDARLGVSSRVH----KDKKQISAEDIQKKVSDRYHVKLTDLRGKSR 391 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + +V PRQ+AMYL + + S + F +RDHTT++H K+E M+E D ++E+E Sbjct: 392 KKEIVMPRQIAMYLCRYLLSISLVSLANEF-NRDHTTIMHGHDKIEAMIEEDQDFRQEIE 450 Query: 495 LL 496 L Sbjct: 451 EL 452 >gi|313887738|ref|ZP_07821420.1| chromosomal replication initiator protein DnaA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846347|gb|EFR33726.1| chromosomal replication initiator protein DnaA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 449 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 142/458 (31%), Positives = 253/458 (55%), Gaps = 43/458 (9%) Query: 54 VYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKN--RYLETITKLFQEEHSRIQGVEI 109 Y++WF R+ S+ ++ + ++VP+ F++ ++ N R+ + + + +E I G++ Sbjct: 25 TYSTWFSRMLPKSIDYDEKKIIITVPSPFIRDYLVNNKRHFDLVGEALRE----ITGIDF 80 Query: 110 LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 + ++ E T +P+ IN N + S L+ ++ F TF+ Sbjct: 81 DISIIS--EDEATDQNPA----GLINKNF--------------LSISRLNPKYTFETFVV 120 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G SN A AA +++E + NPLFI+ VGLGKTHL+ AI + +++ P ++ Sbjct: 121 GKSNEFAHAAALAVSE-NYENPQNAFSNPLFIYGGVGLGKTHLMHAIGHFVLEQDPTKKI 179 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 +Y+T+E F ++I+ N ++ R +DLLLIDD+QF+ K Q EF H N L Sbjct: 180 LYVTSEQFTNELINSIQTNKNEEFRNKYRKVDLLLIDDIQFIADKDRTQEEFFHTFNELH 239 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + KQ+V +D+PP +++SL+ R+ SR G+ V +G D E R +IL+ + + Sbjct: 240 EQNKQIVLTSDKPPKDIKSLEERLISRFAWGLVVDIGPPDLETRIAILRKK-----ADSE 294 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE----LLSHLVNTG 404 +++EV+ +A V ++ REL+GA ++++ +++ + ++I+ E +L + T Sbjct: 295 GFEVSQEVMTFIAENVRSNIRELEGALSRVM---AYSKLTDSDISVESAAIVLRDIYETK 351 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 K++ E I+ VAK Y ++ +D S +R + + PRQ+AMY+++ +T S P+IG F Sbjct: 352 AKKQITAEYIKAEVAKKYGLNLDDFNSRKRTKAIAYPRQIAMYITRELTDLSLPKIGDVF 411 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRLIS 501 G RDH+TV+HA K+ K LE D K E+ L+K + S Sbjct: 412 GGRDHSTVIHAYDKISKDLEEDPIFKIEITNLIKEIKS 449 >gi|71064582|ref|YP_263309.1| chromosomal replication initiator protein DnaA [Psychrobacter arcticus 273-4] gi|71037567|gb|AAZ17875.1| probable bacterial chromosomal replication initiator protein [Psychrobacter arcticus 273-4] Length = 481 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 151/492 (30%), Positives = 257/492 (52%), Gaps = 39/492 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +I+ + L+ V +V+ W + L H ++++ L+ P ++ +IK +LE Sbjct: 2 IDTANIWDKCLNDLRYHVKDNVFTMWLRPLSAHQENNSLIILA-PNDYFVTYIKKNHLED 60 Query: 93 ITKLFQEEHSRIQGVEILVR---------------SVALPSVEKTASSPSITKLSPINTN 137 I +L + HS+ E++VR S +L + + SSP+ K I+ N Sbjct: 61 IQQLVTK-HSQGSIEEVIVRVDNAGRDTDDGSSLQSGSLFAEDALPSSPADYKFETIHHN 119 Query: 138 ISKSPIILGKQTISPVFG------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 +K+ I + V S L+ F F TF+ G SN +A A + + S Sbjct: 120 NAKADIDANMRHAEMVDSADAKSLSYLNPDFTFETFVTGKSNNLAYKACYELGKRQSKN- 178 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 R NPLFI+ GLGKTHL+ ++A+ +K N Y T+E F+ + ++R+N Sbjct: 179 ---RHNPLFIYGPSGLGKTHLMHSVAHRYLKN--NQTFYYFTSEKFINQLVYSLRNNKIE 233 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + K ++ +DLL++DD+ L GK +EF L KQ++ A+DR PS++ D Sbjct: 234 DFKKKIKKVDLLIVDDIHVLAGKTKSSNEFLTLFADFTSGDKQLILASDRHPSQMTEFDE 293 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R RSR G++V + + + R IL+ + A PK E + +A+ V ++ R Sbjct: 294 RFRSRFSWGLTVAVDPPEIDTRVQILQKKAASYGMSLPK-----ECALFIAQNVVSNVRR 348 Query: 371 LDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 L+GA NQ+ + API T E+ L +V + + +++I+++VA++Y+++ D Sbjct: 349 LEGALNQVFANANLTGAPI-TLEMVQYALKDIV-AMRVQAVNMDNIRKVVAEYYDVTIKD 406 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 +L +R R++ RPRQ+AM LS+ +T SFPEIG+ FG RDHTTV+HA KV ++ D Sbjct: 407 MLGRKRTRSIARPRQIAMALSRELTSESFPEIGQSFGGRDHTTVMHACDKVNELRAADPA 466 Query: 489 LKKEVELLKRLI 500 K+ + L ++ Sbjct: 467 FDKDYKTLALML 478 >gi|17229501|ref|NP_486049.1| chromosomal replication initiation protein [Nostoc sp. PCC 7120] gi|38257719|sp|Q8YVG9|DNAA_NOSS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|17131099|dbj|BAB73708.1| chromosomal replication initiator protein [Nostoc sp. PCC 7120] Length = 459 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 148/471 (31%), Positives = 257/471 (54%), Gaps = 31/471 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ +++++ V RL+ ++ + +W + + +N + + P F + W++ Y+ Sbjct: 2 MEMPIDNLWSQVLERLQIELSRPTFETWIKTANAERLENNCLVIITPNPFARNWLQKYYI 61 Query: 91 ETITKLFQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 TI + Q I G VEI + +VA + +L P I+++P Q Sbjct: 62 STIANVVQS----ILGHPVEIYI-TVAKGEEFEEIGGGGEWEL-PTTNIINETP----NQ 111 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + L++++VFS F+ G++NR+A A+ ++AE + NPLF+ VGLG Sbjct: 112 NRQP--NTELNAKYVFSRFVVGANNRMAHAASLAVAESPGREF-----NPLFLCGGVGLG 164 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + + PN ++ Y++ E F +AIR++ + ++ R D+LL+DD+ Sbjct: 165 KTHLMQAIGHYRWEICPNSKIFYVSTEQFTNDLITAIRNDSMQSFREHYRAADVLLVDDI 224 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK Q EF H N+L ++ KQVV A+DRPP+++ SL R+ SR G+ + Sbjct: 225 QFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQAP 284 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 D E R +IL+ + E K+ + +V+ ++A T++ REL+GA + + S Sbjct: 285 DLETRMAILQKK-----SEYEKIRLPRDVIEYIATNFTSNIRELEGALTRALAYISIWGL 339 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 P+ A +A L++ + E + E I ++A +++IS DL SN R R + RQ+ Sbjct: 340 PMTVANLAPVLVTPM----EKIEATPEAILTVIADNFDISIEDLKSNSRRREISWARQIG 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 MYL + T SFP IG FG +DHTTVL++ K+ +++E+D L + + L Sbjct: 396 MYLMRQHTDLSFPRIGEEFGGKDHTTVLYSCDKIAQLVESDRGLSQTLRQL 446 >gi|329902527|ref|ZP_08273137.1| Chromosomal replication initiator protein DnaA [Oxalobacteraceae bacterium IMCC9480] gi|327548755|gb|EGF33394.1| Chromosomal replication initiator protein DnaA [Oxalobacteraceae bacterium IMCC9480] Length = 464 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 139/452 (30%), Positives = 241/452 (53%), Gaps = 20/452 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ + S++L+ ++ P +++W + L + ++ P F W+K ++ IT Sbjct: 2 DNFWQTCSAQLEQELTPQQFSAWIKPLVPLDYEEGRLRIAAPNRFKLDWVKTQFANRITV 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + V+ ++ + TA+ P + N S + G + PV Sbjct: 62 LAGQYWEEPIDVQFVLDPRLNAPRKPTAAMPVAARAEGNGIN-GMSASVGGLIDLPPVDS 120 Query: 156 SP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +P +++ F +F+ G +N++A AA +A D+ G V NPLF++ VGLGK Sbjct: 121 APRRDQSRVNTALTFDSFVTGKANQLARAAAIQVA--DNPG---VSYNPLFLYGGVGLGK 175 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI N + P+ ++ Y+ AE ++ +A + + K ++D+LLIDD+Q Sbjct: 176 THLVHAIGNQVMADNPSAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDVLLIDDIQ 235 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F GK Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + + Sbjct: 236 FFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPE 295 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPI 387 EMR +IL + A +N +++V VA+ + ++ REL+GA + L F Sbjct: 296 LEMRVAILLKKAA-----QEGVNFSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGKD 350 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+ + L L++ + +++ +E+IQ+ VA +NI D+ S +R + RPRQ+AMY Sbjct: 351 ITIEVVKDALKDLLSV-QNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMY 409 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 L+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 410 LAKELTQKSLPEIGELFGGRDHTTVLHAVRKI 441 >gi|330752007|emb|CBL80520.1| chromosomal replication initiation protein [uncultured Polaribacter sp.] Length = 475 Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 147/489 (30%), Positives = 259/489 (52%), Gaps = 33/489 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ ES++ S +K+ + P Y +WF+ +K + + + VP+ F W++ Y+ Sbjct: 1 MNLSAESVWNDCLSFIKDNIKPQAYKTWFEPIKPVKLSGEALTIQVPSKFFYEWLEEHYI 60 Query: 91 ETITKLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKL-----SPINTNISKSPII 144 KL + R G + L+ V + + +++ P I K+ P+ P+ Sbjct: 61 ----KLLRVALVRKLGNDAKLIYDVKMEN-NYSSNRPQIVKIPSSNRDPLKPQKITVPLD 115 Query: 145 LGKQTISPVFGSP----------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 K+ + F P L+ + F F+EG SNR+A +A ++A + G T+ Sbjct: 116 ATKRELRNPFVIPGLQKVKIESQLNPNYNFVNFVEGDSNRLARSAGMAVA--NKPGGTS- 172 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPL I+ VGLGKTHL AI + P+ V+Y+++E F +F +++ N + Sbjct: 173 -FNPLLIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFI 231 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ Sbjct: 232 HFYQMIDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLL 291 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR + G+S L DYE R SIL N+L E P E++ ++A+ + ++ REL+G Sbjct: 292 SRFKWGLSAELQAPDYETRISILDNKLFRDGVEMP-----SEIVEYIAKNIKSNVRELEG 346 Query: 374 AFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 ++ + SF + E+A +++ V + K++ I+ IQ+ V+K++++ L S Sbjct: 347 VIISMIAQASFNRREFSLELAKQIVDKFVKNTK-KEVSIDYIQKEVSKYFDMDVATLQSK 405 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 R R +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + ETD +K Sbjct: 406 TRKRHIVQARQLAMFFAKRLTKTSLASIGNQIGQRDHATVLHACKTVDNLTETDKQFRKY 465 Query: 493 VELLKRLIS 501 V+ L + ++ Sbjct: 466 VDDLTKKLT 474 >gi|293374955|ref|ZP_06621251.1| chromosomal replication initiator protein DnaA [Turicibacter sanguinis PC909] gi|325844340|ref|ZP_08168116.1| chromosomal replication initiator protein DnaA [Turicibacter sp. HGF1] gi|292646432|gb|EFF64446.1| chromosomal replication initiator protein DnaA [Turicibacter sanguinis PC909] gi|325489207|gb|EGC91589.1| chromosomal replication initiator protein DnaA [Turicibacter sp. HGF1] Length = 448 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 133/353 (37%), Positives = 201/353 (56%), Gaps = 22/353 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++ + F F+ G SNR+A A +AE NPL+I VGLGKTHL+QAI Sbjct: 109 LNTTYTFDRFVAGKSNRLAYMIALQVAERPGE-----VANPLYIFGGVGLGKTHLMQAIG 163 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P+ R++Y T+E F+ + A DN K+ RNID+LLIDD+QFL K Sbjct: 164 NFILDDNPSSRILYCTSEKFIDDYRHATLDNNFEAFKEKYRNIDVLLIDDIQFLSKKEQT 223 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N L ++ KQ+V +DRP S+L+ + R+ SR + G+ + + D + R I+ Sbjct: 224 QTEFFNTFNELYNNNKQIVITSDRPASDLKDIMDRLTSRFEWGLQADIQIPDTQTRIEIM 283 Query: 337 KNRLA---ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LT 389 K +LA I+ E P EEVL +A ++ R L+GA +L+F +A I T Sbjct: 284 KKKLAGENINLDEFP-----EEVLEFIASKFNSNVRTLEGALKRLIF---YATINNSDFT 335 Query: 390 AEIADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A+E L L + K+ + +I + V +Y++S D+LS +R + + RQVAM+L Sbjct: 336 IELANEALRDLFKAEQKNSKIDVNNIIKEVGAYYDVSVADILSKKRKKNIAYARQVAMFL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T SFP+IG F RDHTT++H K+EK L+ LKK + LK+ +S Sbjct: 396 TRELTGSSFPKIGEAFSGRDHTTIMHGCEKIEKELKESAELKKAINDLKQALS 448 >gi|237747155|ref|ZP_04577635.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes HOxBLS] gi|229378506|gb|EEO28597.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes HOxBLS] Length = 460 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 139/455 (30%), Positives = 245/455 (53%), Gaps = 26/455 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S+L+ ++ P Y++W + L ++ ++ P F W+K +Y + IT Sbjct: 2 ENFWQNCLSQLELELTPQQYSAWIKPLVPLDYNDRVLRIAAPNRFKLDWVKTQYADRITA 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-PIILGKQTISPVF 154 L S+ + V+ + P ++S +++ L+ +++ P + + +PV Sbjct: 62 L----ASQFLDASVEVQFILNPQSRASSSVKTVSPLAKAELPSAEADPDAIPHK--APVM 115 Query: 155 GSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P +++ F +F+ G +N++A AA +A Y NPL++ VGLG Sbjct: 116 ETPVREQSRINAEMTFDSFVTGKANQLARAAAIQVANNPGVSY-----NPLYLFGGVGLG 170 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI N ++ P+ R+ Y+ AE ++ +A + + K ++D+LLIDD+ Sbjct: 171 KTHLIHAIGNQVLQDIPSARIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDMLLIDDI 230 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF GK Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + Sbjct: 231 QFFSGKNRTQEEFFYAFEALIAARKQIIITSDTYPKEISGMDDRLTSRFDSGLTVAIEPP 290 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAP 386 + EMR +IL I + + ++++V VA+ + ++ REL+GA + L F Sbjct: 291 ELEMRVAIL-----IKKAGQEGIQLSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGR 345 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E+ E L L++ + +++ +E+IQ+ VA + I D+ S RR + RPRQ+AM Sbjct: 346 DITIELTKEALKDLLSV-QNRQISVENIQKTVADFFRIKVADMYSKRRPANIARPRQIAM 404 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 YL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 405 YLTKELTQKSLPEIGELFGGRDHTTVLHAVRKIAQ 439 >gi|78187975|ref|YP_376018.1| chromosomal replication initiation protein [Chlorobium luteolum DSM 273] gi|78167877|gb|ABB24975.1| chromosomal replication initiator protein DnaA [Chlorobium luteolum DSM 273] Length = 489 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 141/471 (29%), Positives = 242/471 (51%), Gaps = 37/471 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ + P + +WF ++ N + + VP+ F WI+ Y ++ +E + Sbjct: 35 IREHINPLAFQTWFSPIRPLDYSGNQLTIQVPSTFFYEWIEEHY----SQFLKEALRDVI 90 Query: 106 GVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV---------FG 155 G E L+ S+ + +K+ P +L P N K I K F Sbjct: 91 GPEARLMYSIVM---DKSQGQPVTMQLPPQNVQAEKKAEIFQKDGGKADRAFERDVERFE 147 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+S++ F T I G N +A AA+S+A+ NPL I+ VGLGKTH++QA Sbjct: 148 THLNSKYTFDTLIRGDCNSLAFAAAKSVAQNPGQN----AFNPLVIYGGVGLGKTHIMQA 203 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + +V+Y+++E F F +AI++ RNID+L+IDD+QF GK Sbjct: 204 IGNTVRESRDASKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRNIDVLIIDDIQFFSGKE 263 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q E H+ N+L S KQ++ +ADRP +++ ++ R+ SR G+S + DYE R + Sbjct: 264 KTQEEIFHIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRKA 323 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-----ILT 389 I+ ++L S +N +E V+ +A VT + REL+G +L+ S T Sbjct: 324 IILSKLHQS-----GVNFDENVIEFIANNVTDNVRELEGCIVKLLAAQSLDKREIDLQFT 378 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +++ H TK++ ++ I++ V ++++I+ NDL + + + RQ+AMYLS Sbjct: 379 KSTLKDIIRHT-----TKQLNLDTIEKAVCEYFSITSNDLKGKSKKKEISVGRQIAMYLS 433 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K MT S IG FG RDH+TV+HA+ + K +++ + +++ ++R I Sbjct: 434 KQMTDSSLKTIGLHFGGRDHSTVIHAINTIAKKVDSGGEDRGKIDEIRRRI 484 >gi|312878753|ref|ZP_07738553.1| chromosomal replication initiator protein DnaA [Aminomonas paucivorans DSM 12260] gi|310782044|gb|EFQ22442.1| chromosomal replication initiator protein DnaA [Aminomonas paucivorans DSM 12260] Length = 439 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 155/471 (32%), Positives = 254/471 (53%), Gaps = 37/471 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++++ V ++ K+ + P W + S+ ++ L VP F+K I++R+L Sbjct: 1 MEQDLKALWQDVLAQGKDTLPPGAADIWLKTCLPLSLEGGVLALDVPNVFIKEQIQSRFL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + +L QGVE+ V S P+ +K A + + Q + Sbjct: 61 VPLQELLLS-RGVAQGVELQVASEIRPNEQKRAEAAA--------------------QLV 99 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P G L+ +VF TF+ G SNR+A A+ + AE Y NPLFI VGLGKT Sbjct: 100 VPKNG--LNPNYVFDTFVVGKSNRLAHAASLASAESPGVAY-----NPLFIWGGVGLGKT 152 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F S+I++N + K R++D+LLIDD+QF Sbjct: 153 HLMHAIGHYVSENLPGAKVVYVSSEKFTNELISSIQNNRTQDFKAKYRSVDVLLIDDIQF 212 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L K Q EF H NSL D+ KQVV ++DRPP +++ ++ R+ SR + G+ + D Sbjct: 213 LADKESTQEEFFHTFNSLHDAKKQVVISSDRPPKDIQRVEERLVSRFEWGLVTDIQPPDL 272 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--API 387 E R +IL+ + + P E+V+ +A+ + ++ REL+GA N++V PI Sbjct: 273 ETRVAILQKKAELRGYVVP-----EDVIFFLAQNIPSNIRELEGALNRVVACSELNGEPI 327 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T E A E L ++ + I+ IQ +VA+ + I +L S++R + RQ+AMY Sbjct: 328 ST-ERAAEWLKDIIRNVLRGPVSIDLIQHLVAESFGIPVEELSSSKRTSDLALARQIAMY 386 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 LS+ T S +IG F +DHTTVLHA RK++++L+ D+ +K V+ +++ Sbjct: 387 LSREYTEASLQQIGYGFNKKDHTTVLHACRKIDELLKNDLRVKSIVDNVRK 437 >gi|260584257|ref|ZP_05852004.1| DNA replication initiator protein, ATPase [Granulicatella elegans ATCC 700633] gi|260157775|gb|EEW92844.1| DNA replication initiator protein, ATPase [Granulicatella elegans ATCC 700633] Length = 455 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 201/347 (57%), Gaps = 17/347 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F +FI G N++A AA + E Y NPLF + VGLGKTHL+QA Sbjct: 118 SLLNPKYTFDSFIIGKGNQMAHAAALVVCERPGQLY-----NPLFFYGGVGLGKTHLMQA 172 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N PN RV Y+T+E F +++R N +D RN+DLLL+DD+QF K Sbjct: 173 IGNQYKLLNPNARVKYVTSEAFTNEMITSLRTNTQQEFRDYYRNVDLLLVDDIQFFAEKE 232 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V +DR P+E+++L R+ SR G+ V + D E R + Sbjct: 233 ATQEEFFHTFNALFNNQKQIVLTSDRQPTEIKALQERLVSRFVSGLPVDITPPDLETRIA 292 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIA 393 IL + E ++I + L ++A + ++ REL+GA ++ + + +T +A Sbjct: 293 ILSKK-----AEAVGIDIPTDTLSYIAGQIQSNVRELEGALVRVQAYSVTHGEDITTNLA 347 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L + + + K + ++DIQ VA++Y+IS DL +R +++V PRQ+AMYL++ +T Sbjct: 348 AEALQNFIPGSKEKIVSVQDIQEAVARYYHISLEDLKGKKRTKSIVEPRQIAMYLARELT 407 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKV--EKMLETDITLKKEVELLKR 498 S P++G FG +DH+TVLHA K+ E L+ DIT K V LK+ Sbjct: 408 NSSLPKLGTEFG-KDHSTVLHAYDKINEEYKLQGDIT--KAVNDLKK 451 >gi|312865764|ref|ZP_07725986.1| chromosomal replication initiator protein DnaA [Streptococcus downei F0415] gi|311098639|gb|EFQ56861.1| chromosomal replication initiator protein DnaA [Streptococcus downei F0415] Length = 462 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 134/359 (37%), Positives = 209/359 (58%), Gaps = 14/359 (3%) Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 Q+ P S L+ ++ F FI+G N+ A A SIA +S G T NPLFI GL Sbjct: 111 QSSQPALPSNLNPKYQFDNFIQGDENKWA--KAASIAVANSPGTT---YNPLFIWGGPGL 165 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL AI N ++ PN RV Y+TAE F+ F + IR LKD+ R++D+LLIDD Sbjct: 166 GKTHLLNAIGNTVLENNPNARVRYITAENFINEFVTHIRLESMEELKDNFRSLDVLLIDD 225 Query: 268 MQFLQGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 +Q L K + Q EF + N+L + KQ+V +DR P L +L+ R+ +R + G++V + Sbjct: 226 IQSLAKKTLEGTQEEFFNTFNALHANNKQIVLTSDRTPDHLNNLEERLVTRFKWGLTVDI 285 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRH 382 DYE R +IL N++ ++ +++ + ++A ++ R+L+GA LV Sbjct: 286 TPPDYETRIAILTNKIL---EQGFPYTFSQDTIEYLAGQFDSNVRDLEGALKDINLVATV 342 Query: 383 SFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 A ++T ++A E + + + + I++IQ V+K Y ++ ++ S +R + +V Sbjct: 343 KQANVITVDLAAEAIRARKQDAPVINIISIDEIQTQVSKFYGVTVKEIKSTKRNQNIVLA 402 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQVAMYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E+E +K I Sbjct: 403 RQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIETIKNKI 461 >gi|227500986|ref|ZP_03931035.1| DNA-directed DNA replication initiator protein [Anaerococcus tetradius ATCC 35098] gi|227216759|gb|EEI82157.1| DNA-directed DNA replication initiator protein [Anaerococcus tetradius ATCC 35098] Length = 459 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/348 (35%), Positives = 207/348 (59%), Gaps = 10/348 (2%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +F+ F+EG SN+ AL +Q++AE S+ NPLFI+ GLGKTHL+QAIA Sbjct: 119 LEEENIFANFVEGKSNQYALGVSQAVAENISNKSQARLYNPLFIYGESGLGKTHLMQAIA 178 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + + + V+YL++E F SA+R ++ R++D+LLIDD+QF+ GK Sbjct: 179 HEILDNRDDAYVMYLSSEKFTNEMISALRSTKNEKFREKYRSVDILLIDDIQFIAGKEGT 238 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L ++ KQ+V ++DRPP E++ L+ R+ SR G+ V +G D+E R +IL Sbjct: 239 QEEFFHTFNDLYNTGKQIVISSDRPPKEIKHLENRLISRFSWGIIVDIGKPDFETRVAIL 298 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV--FRHSFAPILTAEIAD 394 + +L + I ++L ++A + T+ R+L+GA + + + I+T E A Sbjct: 299 QKKL-----DQLGAYIENDILFYIAENIDTNIRDLEGALSTAIAYAKSDNREIVTMEDAI 353 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + + V + K++ I+DIQ+ VA Y + ++L R + +V PRQ+AM+L++ + Sbjct: 354 KGVGTRVKD-KKKRVGIDDIQKYVADKYGVKLSELKGKSRKKEIVNPRQIAMFLAREILE 412 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S I F DRDHTTV+H + K++K ++ D + K+E++ L + ISE Sbjct: 413 DSLVTISNAF-DRDHTTVMHGIDKIQKQMDEDGSFKEEIDALLKEISE 459 >gi|209558588|ref|YP_002285060.1| chromosomal replication initiation protein [Streptococcus pyogenes NZ131] gi|226735856|sp|B5XIP2|DNAA_STRPZ RecName: Full=Chromosomal replication initiator protein DnaA gi|209539789|gb|ACI60365.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes NZ131] Length = 451 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 205/355 (57%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+S++ F FI+G NR A+ A SIA ++ G T NPLFI GLGKTH Sbjct: 106 PTVTSDLNSKYSFENFIQGDENRWAVAA--SIAVANTPGTT---YNPLFIWGGPGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 161 LLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSL 220 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 221 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 281 FETRVAILTNKI-----QEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLGANFKQID 335 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +IA E + G + + IE+IQ K Y ++ ++ + +R + +V RQVA Sbjct: 336 TITVDIAAEAIRARKQDGPKMTVIPIEEIQAQGGKFYGVTGKEIKATKRTQNIVLARQVA 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 396 MFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKI 450 >gi|94993397|ref|YP_601495.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS10750] gi|123080159|sp|Q1J960|DNAA_STRPF RecName: Full=Chromosomal replication initiator protein DnaA gi|94546905|gb|ABF36951.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes MGAS10750] Length = 451 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 205/355 (57%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+ ++ F FI+G NR A+ A SIA ++ G T NPLFI GLGKTH Sbjct: 106 PTVTSDLNPKYSFENFIQGDENRWAVAA--SIAVANTPGTT---YNPLFIWGGPGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 161 LLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSL 220 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 221 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 281 FETRVAILTNKI-----QEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID 335 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +IA E + G + + IE+IQ V K Y ++ ++ + +R + +V RQVA Sbjct: 336 TITVDIAAEAIRARKQDGPKMTVIPIEEIQTQVGKFYGVTVKEIKATKRTQNIVLARQVA 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 396 MFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKI 450 >gi|86607504|ref|YP_476266.1| chromosomal replication initiation protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|123765419|sp|Q2JHS1|DNAA_SYNJB RecName: Full=Chromosomal replication initiator protein DnaA gi|86556046|gb|ABD01003.1| chromosomal replication initiator protein DnaA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 467 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 144/476 (30%), Positives = 256/476 (53%), Gaps = 25/476 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ + ++ L+ Q+ + +W + + S++ N + + P+ + + W++ Y Sbjct: 1 MDISLDQLWDEALCHLQVQLSRPTFEAWIKTARAESLVDNRLTICTPSEWARGWLQKHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP--IILGKQ 148 TIT++ Q R+ G+ + V P A PS +SP + P LG + Sbjct: 61 STITEVVQ----RVAGIPLQVEFSVSPHASVEAEPPS-RAISPTSGRAGSLPASTTLGLE 115 Query: 149 TIS--PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 P+ L+ ++ FS F+ G +NR+A AA ++A+ Y NPLF+ VG Sbjct: 116 VGGSLPMRAPDLNPKYSFSRFVVGPNNRMAHAAALAVADKPGRAY-----NPLFLCGGVG 170 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QAI + ++ P +V Y++ E F AIR + + ++ R++D+LL+D Sbjct: 171 LGKTHLMQAIGHYQLEANPQAKVFYVSTERFTNDLIDAIRRDSMQSFREHYRDVDILLVD 230 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF++GK Q EF H N+L +S KQ+V AADR P + L R+ SR G+ + Sbjct: 231 DVQFIEGKEYTQEEFFHTFNTLHESGKQIVLAADRSPHLIPRLQERLCSRFSMGLIAEIQ 290 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E R +ILK + E +N+ +V+ ++A T T++ REL+GA + V ++ Sbjct: 291 SPDIETRMAILKKK-----AEYEGMNLPADVIEYIATTYTSNIRELEGALIRAV---AYV 342 Query: 386 PILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 I ++ E + ++N E K++ + I +V + + I R+ LL + R R + + RQ+ Sbjct: 343 SISGLPMSVETIQPILNPPSEPKEITADMITDVVCEEFGIDRDSLLGSSRKRDISQARQI 402 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRL 499 AM+L + T S P+IG FG +DHTTVL++ KV ++ + +++++ L++RL Sbjct: 403 AMFLMRHYTNLSLPKIGDYFGGKDHTTVLYSCEKVSQLQRQSLQFERQLQKLVERL 458 >gi|238853339|ref|ZP_04643719.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 202-4] gi|238834027|gb|EEQ26284.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 202-4] Length = 454 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 204/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 118 LNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +P+ +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF K I Sbjct: 173 HQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFFSKKEGI 232 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 233 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAIL 292 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I+ L ++A V T+ REL+GA LV + A I + ++ Sbjct: 293 RKKA-----ETDGLAIDGSTLDYIASQVDTNIRELEGA---LVKVQAHATIEREDINVDL 344 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ + Sbjct: 345 AKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSREL 404 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 405 TDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 452 >gi|71275534|ref|ZP_00651820.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Dixon] gi|71900181|ref|ZP_00682321.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|170729252|ref|YP_001774685.1| chromosomal replication initiation protein [Xylella fastidiosa M12] gi|71163834|gb|EAO13550.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Dixon] gi|71730070|gb|EAO32161.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|167964045|gb|ACA11055.1| chromosomal replication initiator [Xylella fastidiosa M12] Length = 443 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 252/477 (52%), Gaps = 46/477 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE RL+ + P+ +W + L+ +++ L P F+ ++ R Sbjct: 10 RCLE------------RLETEFPPEDVHTWLRPLQAEQRGDSVI-LYAPNPFIIELVEER 56 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS-PINTNISKSPIILGK 147 YL + +L S G+ +V ++ S P T+L P++T SP + Sbjct: 57 YLGRLRELL----SYFSGIREVVLAIG--------SRPKTTELPVPVDTTGRLSPTV--- 101 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 F LD+ + F F+EG SN++A AA A+ G T NPL ++ GL Sbjct: 102 -----PFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQ--KPGDRT--HNPLLLYGGTGL 152 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A N + P +V+YL +E F A++D K ID LLIDD Sbjct: 153 GKTHLMFAAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDD 212 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + Sbjct: 213 IQFFAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDP 272 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 D+E R +I+ +++ + I +EV +A+ + ++ R+L+GA N LV R +F Sbjct: 273 PDFETRAAIV-----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTG 327 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E + E L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+A Sbjct: 328 RAVTIEFSQETLRDLLR-AQQQTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLA 386 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 M L+K +T S PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 387 MALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 443 >gi|167748043|ref|ZP_02420170.1| hypothetical protein ANACAC_02781 [Anaerostipes caccae DSM 14662] gi|317472418|ref|ZP_07931743.1| chromosomal replication initiator protein DnaA [Anaerostipes sp. 3_2_56FAA] gi|167652523|gb|EDR96652.1| hypothetical protein ANACAC_02781 [Anaerostipes caccae DSM 14662] gi|316900138|gb|EFV22127.1| chromosomal replication initiator protein DnaA [Anaerostipes sp. 3_2_56FAA] Length = 447 Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 119/341 (34%), Positives = 202/341 (59%), Gaps = 12/341 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F +F+ G++N++A A ++AE + Y NPLF++ GLGKTHL+ +IA Sbjct: 110 LNPRYTFDSFVVGTNNQMAHAACIAVAEAPAEAY-----NPLFLYGGAGLGKTHLMHSIA 164 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++ L+V+Y+T+E F +AI N L++ R ID+LLIDD+QF+ GK Sbjct: 165 HYIMENNSKLKVLYVTSEDFTNEVINAIHHNKQEELRNKYRTIDVLLIDDIQFIIGKDST 224 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S Q++ ++D+PP E+E+L+ R+R+R G++ + DYE R +IL Sbjct: 225 QQEFFHTFNALYNSKSQIIISSDKPPKEIETLEERLRTRFGCGLTADIQPPDYETRIAIL 284 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 + R + + I++ + ++A + ++ REL+GA N++ V+ + ++A Sbjct: 285 RKRAELDH-----IYIDDAIFDYIASNIKSNIRELEGALNKIRVYSKLEKRPIDLDLAKI 339 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L LV+ K+ + I VA+H+NI D++S +R + PRQ+ MYL K +T Sbjct: 340 ALKDLVDNDTVVKITPDLIITTVAEHFNIQPADIISKKRSHDIAYPRQICMYLCKKLTDT 399 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 SF +IG G RDH+TV+H K+EK L+ D +L ++++ Sbjct: 400 SFVKIGEYLGKRDHSTVIHGSEKIEKDLQKDSSLSTTLDVI 440 >gi|291333918|gb|ADD93598.1| chromosomal replication initiation protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 444 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 149/462 (32%), Positives = 245/462 (53%), Gaps = 37/462 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNI----VHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 L+ ++ D +++W L + V L P +F+K +K Y I + Sbjct: 13 LELELNQDEFSTWISPLAYSEEQDEFGMQAVTLLAPNDFIKEHVKQNYDSIIKQYL---- 68 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 SR E L + L + K P ITK K P + K+ + L Sbjct: 69 SRSLDSENLSLNYDLFNSPK----PLITK-----DKSKKIPFLDDKE-------NSLFEN 112 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F TF+EG SN +AL AA+ +A+ Y NPLFI+ VGLGKTHL+ A+ N Sbjct: 113 FTFETFVEGKSNNIALAAAKQVADSPKGAY-----NPLFIYGGVGLGKTHLMHAVGNKLK 167 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ P+ R+VY+ +E F+ +++ K R +D LLIDD+QF GK Q E Sbjct: 168 EKDPSKRIVYIHSERFVSDMVKSLQLGAINEFKQFYRGVDALLIDDIQFFAGKEQSQEEL 227 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+LL+ +Q++ DR P E+E L+ R++SRL G+ V + + E R +IL Sbjct: 228 FHTFNALLEGGQQMILTCDRYPKEIEGLEERLKSRLGWGLPVIVEPPELETRVAIL---- 283 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSH 399 + + E+ LN+ ++ ++ + ++ REL+GA ++ FA + + E L Sbjct: 284 -LKKAEELNLNMPQDCAFFISERIRSNVRELEGALKRVGANAKFANKEVDLNLIKESLRD 342 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L+ + +++ I++IQ+ V+ ++NI +DLLS++R R++ RPRQ++M L+K +T S PE Sbjct: 343 LLAI-QARQVSIDNIQKTVSDYFNIRLSDLLSSKRNRSLARPRQLSMSLAKELTNHSLPE 401 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG FG RDHTTVLHA +K+ ++ + L ++ + L R+++ Sbjct: 402 IGDAFGGRDHTTVLHACKKIGELRQGSTELDEDYKNLVRVLT 443 >gi|260774541|ref|ZP_05883454.1| chromosomal replication initiator protein dnaA [Vibrio metschnikovii CIP 69.14] gi|260610447|gb|EEX35653.1| chromosomal replication initiator protein dnaA [Vibrio metschnikovii CIP 69.14] Length = 311 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 125/308 (40%), Positives = 192/308 (62%), Gaps = 10/308 (3%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K Sbjct: 10 NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRY 69 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR Sbjct: 70 YRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSR 129 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 G++V + + E R +IL +++ ED ++++ +EV +A+ + ++ REL+GA Sbjct: 130 FGWGLTVAIEPPELETRVAIL-----MTKAEDHQIHLPDEVAFFIAKRLRSNVRELEGAL 184 Query: 376 NQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N+++ +F PI T + E L L+ E K + I++IQ+ VA++Y I DLLS R Sbjct: 185 NRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKR 242 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R+V RPRQ+AM LSK +T S PEIG FG RDHTTVLHA RK+E++ E +K++ Sbjct: 243 RSRSVARPRQLAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDY 302 Query: 494 ELLKRLIS 501 L R +S Sbjct: 303 SNLIRTLS 310 >gi|55820104|ref|YP_138546.1| chromosomal replication initiation protein [Streptococcus thermophilus LMG 18311] gi|55821994|ref|YP_140435.1| chromosomal replication initiation protein [Streptococcus thermophilus CNRZ1066] gi|116626973|ref|YP_819592.1| chromosomal replication initiation protein [Streptococcus thermophilus LMD-9] gi|71151807|sp|Q5M226|DNAA_STRT1 RecName: Full=Chromosomal replication initiator protein DnaA gi|71151808|sp|Q5M6L8|DNAA_STRT2 RecName: Full=Chromosomal replication initiator protein DnaA gi|122268421|sp|Q03N26|DNAA_STRTD RecName: Full=Chromosomal replication initiator protein DnaA gi|55736089|gb|AAV59731.1| chromosomal replication initiator protein dnaA [Streptococcus thermophilus LMG 18311] gi|55737979|gb|AAV61620.1| chromosomal replication initiator protein dnaA [Streptococcus thermophilus CNRZ1066] gi|116100250|gb|ABJ65396.1| ATPase involved in DNA replication initiation [Streptococcus thermophilus LMD-9] gi|312277419|gb|ADQ62076.1| Chromosomal replication initiator protein dnaA [Streptococcus thermophilus ND03] Length = 454 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/425 (34%), Positives = 231/425 (54%), Gaps = 31/425 (7%) Query: 90 LETITKLFQEEHSR----IQGVEILVRSVALPSVEKTA----SSPSITKLSPINTNISKS 141 LE + KLF E++ + + G E+ + + V A + P++ N ++ Sbjct: 46 LEEVKKLFWEKNMQSFILMTGFEVYNSEIKVEYVFDEALVSETKPTLANNDFSNKREQQT 105 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P + P S L+S++ F FI+G NR ++ A+ ++A DS G T NPLFI Sbjct: 106 PDL-------PTLNSDLNSKYTFDNFIQGDENRWSVAASLAVA--DSPGAT---YNPLFI 153 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL AI N + P R+ Y+TAE F+ F IR + LK R++D Sbjct: 154 YGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVLHIRLDKMDELKLKYRHLD 213 Query: 262 LLLIDDMQFLQGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +LLIDD+Q L K Q EF + N L D+ KQ+V +DR P +L ++ R+ +R + Sbjct: 214 VLLIDDIQSLAKKSTQATQEEFFNTFNVLHDNNKQIVLTSDRNPDQLNEMEERLVTRFKW 273 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ- 377 G++V + D+E R +IL N++ D + E + ++A ++ R+L+GA Sbjct: 274 GLTVNITPPDFETRVAILTNKIM-----DYDYHFPPETIEYLAGQFDSNVRDLEGALKDI 328 Query: 378 -LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 LV +T E+A E + + ++ + + IEDIQ V K YN++ ++ + +R Sbjct: 329 SLVANVRQLDTITVEVAAEAIRARKIDGPKLTLIPIEDIQSEVGKFYNVTVKEIKATKRT 388 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 + +V RQVAMYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E++ Sbjct: 389 QNIVLARQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIDT 448 Query: 496 LKRLI 500 +K I Sbjct: 449 IKNKI 453 >gi|194363779|ref|YP_002026389.1| chromosomal replication initiation protein [Stenotrophomonas maltophilia R551-3] gi|226735851|sp|B4SU11|DNAA_STRM5 RecName: Full=Chromosomal replication initiator protein DnaA gi|194346583|gb|ACF49706.1| chromosomal replication initiator protein DnaA [Stenotrophomonas maltophilia R551-3] Length = 443 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 151/462 (32%), Positives = 247/462 (53%), Gaps = 32/462 (6%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 RL+ + P+ +W + L+ + ++V L P F+ ++ YL I +L + Sbjct: 10 RLEAEFPPEDVHTWLKPLQADLRVDSLV-LYAPNAFIVDQVRELYLARIRELL----AHF 64 Query: 105 QGV-EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 G ++ + + P + ++P S + ++S P + F LD+ + Sbjct: 65 AGFSDVFLEIGSRPRPVEAQNAP----FSTPSAHVSSEPQV--------PFAGNLDNHYT 112 Query: 164 FSTFIEGSSNRVALTAA-QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ F+EG SN++ L AA Q+ + + NPL ++ GLGKTHL+ A NA + Sbjct: 113 FANFVEGRSNQLGLAAAFQAAQKPGDRAH-----NPLLLYGGTGLGKTHLMFAAGNAMRQ 167 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 P +V+YL +E F A+++ K + +D LLIDD+QF GK Q EF Sbjct: 168 ANPGAKVLYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDALLIDDIQFFAGKDRTQEEFF 227 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L D +Q++ DR P E+E L+ R++SRL G+SV + D+E R +I+ Sbjct: 228 HTFNALFDGKQQIILTCDRYPREVEGLEARLKSRLAWGLSVAIEPPDFETRAAIV----- 282 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 +++ + I ++V +A+ + ++ R+L+GA N L R +F +T E A E L L Sbjct: 283 LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLTARANFTGRAITTEFAQETLRDL 342 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T S PEI Sbjct: 343 LR-AQQQAISIPNIQKTVADYYGLQIKDLLSKRRTRSLARPRQVAMALTKELTEHSLPEI 401 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G F RDHTTVLHA R++ ++E D L+++ + L R +SE Sbjct: 402 GDAFAGRDHTTVLHACRQIRTLMEADGKLREDWDKLIRKLSE 443 >gi|152981050|ref|YP_001351691.1| chromosomal replication initiation protein [Janthinobacterium sp. Marseille] gi|166214676|sp|A6STW2|DNAA_JANMA RecName: Full=Chromosomal replication initiator protein DnaA gi|151281127|gb|ABR89537.1| chromosomal replication initiator protein DnaA [Janthinobacterium sp. Marseille] Length = 460 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 139/448 (31%), Positives = 241/448 (53%), Gaps = 16/448 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S++L+ ++ P Y++W + L + ++ P F W+K ++ IT Sbjct: 2 ENFWQTCSAQLEQELTPQQYSAWIKPLAPLDYEDGTLRIAAPNRFKLDWVKTQFAGRITS 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-SPIILGKQTISPVF 154 + + V+ V L S +K +S S+ + + S PI +P Sbjct: 62 IAAQFWDMPVDVQ-FVLDPRLASAKKPTTSASVAPIQSDDVPASVLEPIPSNATDHTPRR 120 Query: 155 G-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S +++ F +F+ G +N++A AA +A Y NPLF++ VGLGKTHL+ Sbjct: 121 DQSRINTALTFDSFVTGKANQLARAAAIQVANNPGSSY-----NPLFLYGGVGLGKTHLI 175 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N + P++++ Y+ AE ++ +A + + K ++DLLLIDD+QF G Sbjct: 176 HAIGNQVLADNPDVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFGG 235 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + + EMR Sbjct: 236 KSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPELEMR 295 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + A+ + + +++V VA+ + ++ REL+GA +++ F +T E Sbjct: 296 VAILLKK-AVQEG----VTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIE 350 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + + L L++ + +++ +E+IQ+ VA +NI D+ S +R + RPRQ+AMYL+K Sbjct: 351 VVKDALKDLLSV-QNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKE 409 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 410 LTQKSLPEIGELFGGRDHTTVLHAVRKI 437 >gi|319940693|ref|ZP_08015035.1| chromosomal replication initiator protein dnaA [Sutterella wadsworthensis 3_1_45B] gi|319805844|gb|EFW02611.1| chromosomal replication initiator protein dnaA [Sutterella wadsworthensis 3_1_45B] Length = 454 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 152/468 (32%), Positives = 249/468 (53%), Gaps = 48/468 (10%) Query: 49 QVGPDVYASWFQRLK--FHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 Q P +Y +WF+ LK + + I+ L P + +I+ Y ++I+ + +RI G Sbjct: 17 QNTPKIYTTWFEVLKPTYWNEKDGILTLEAPATKI-TYIRGAYQKSISAVA----TRIHG 71 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 + V S+ V+ S T P T I + + L F Sbjct: 72 SAVAV-SLVPAQVKPVQREESGTSHPPSETEIKRRE------------ETGLLPGLTFEN 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 ++ G++N++A+ AA+ +A T + NPL+I+ VGLGKTHL+QAI + + P Sbjct: 119 YVNGNANQLAVAAAEHVATT-----TGTQYNPLYIYGGVGLGKTHLMQAIGHRYLDLHPK 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALN------LKDSLRNIDLLLIDDMQFLQG-KLIQHE 279 RV ++A+ F+ + SA+R++ + R++DLLLIDD+Q L G K Q + Sbjct: 174 ARVRCVSAQDFINEYTSAVRESTNKTHASLEKFDERYRSLDLLLIDDVQSLSGAKGSQGQ 233 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F +L+ KQ+V +D L+ ++PR+ SRL G+SV + ++EMR +IL N+ Sbjct: 234 FFRAFEALVPHNKQLVITSDTYTRGLKDIEPRLISRLSQGLSVAIEPPEFEMRTAILLNK 293 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADE 395 + +++ +EV ++A+ + ++ REL+GA Q+V F +T +IA Sbjct: 294 -----AKTMGVDLPDEVAAYIAKRLKSNVRELEGALQQVVAYQQFQATSSREITIDIAKR 348 Query: 396 LLS---HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 +L +VN+ + IE+IQ+ VA +Y I D+ S RR + RPRQ+AMYL+K + Sbjct: 349 VLREQFQVVNS----LITIENIQKTVADYYKIKVADMHSKRRPANIARPRQIAMYLTKEL 404 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S PEIG FG RDHTTV+HAVRK+ + + D L E+ +L+++I Sbjct: 405 TQHSLPEIGENFGGRDHTTVMHAVRKITQERQNDAELNHEIHVLEQMI 452 >gi|241765812|ref|ZP_04763752.1| chromosomal replication initiator protein DnaA [Acidovorax delafieldii 2AN] gi|241364294|gb|EER59449.1| chromosomal replication initiator protein DnaA [Acidovorax delafieldii 2AN] Length = 471 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/434 (33%), Positives = 235/434 (54%), Gaps = 25/434 (5%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 V L V F WI+ +Y I L + + G I++ +AL E A T + Sbjct: 56 VTLFVANRFKLDWIRAQYAGRIAALLEA----LYGQSIIL-ELALAQRESVAR----TYV 106 Query: 132 SPINTNISKSPIILGKQT---ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 P + +++P T + F + L+ F T +EG++NR+A +AA +A + Sbjct: 107 RPNSAEATQAPEAAPSSTDEAPAGAFRTRLNPALTFETLVEGTANRMARSAAMHVAGMPG 166 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 H Y NPLFI+ VGLGKTHL+ A+ N ++ +P+ +V+Y+ AE F+ A + Sbjct: 167 HLY-----NPLFIYGGVGLGKTHLVHAVGNRLLQDKPDAKVLYIHAEQFVSDVVKAYQRR 221 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 K+ ++DLLLIDD+QF K Q EF + +LL +V +D P L + Sbjct: 222 TFDEFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLAN 281 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 + R+ SR G++V + + EMR +IL N+ + E P EEV VA+ V ++ Sbjct: 282 IHERLVSRFDSGLTVAIEPPELEMRVAILINKARVEGTEMP-----EEVAFFVAKNVRSN 336 Query: 368 GRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y I Sbjct: 337 VRELEGALRKILAYSRFNQKEISIQLAREALRDLLSI-QNRQISVENIQKTVADYYKIKV 395 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 396 ADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKISGERQQL 455 Query: 487 ITLKKEVELLKRLI 500 L +++ +L++ + Sbjct: 456 TELNQQLHVLEQTL 469 >gi|182680573|ref|YP_001828733.1| chromosomal replication initiation protein [Xylella fastidiosa M23] gi|182630683|gb|ACB91459.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa M23] Length = 443 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 254/477 (53%), Gaps = 46/477 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE RL+ + P+ +W + L+ +++ L P F+ ++ R Sbjct: 10 RCLE------------RLETEFPPEDVHTWLRPLQADQRGDSVI-LYAPNTFIIELVEER 56 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS-PINTNISKSPIILGK 147 YL + +L S G+ +V ++ S P T+L+ P++T G+ Sbjct: 57 YLGRLRELL----SYFSGIREVVLAIG--------SRPKTTELTVPVDTT--------GR 96 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + F LD+ + F F+EG SN++A AA A+ G T NPL ++ GL Sbjct: 97 LSQTVPFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQ--KPGDRT--HNPLLLYGGTGL 152 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A N + P +V+YL +E F A++D K ID LLIDD Sbjct: 153 GKTHLMFAAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDD 212 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + Sbjct: 213 IQFFAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDP 272 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 D+E R +I+ +++ + I +EV +A+ + ++ R+L+GA N LV R +F Sbjct: 273 PDFETRAAIV-----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTG 327 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E + E L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+A Sbjct: 328 RAVTIEFSQETLRDLLR-AQQQTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLA 386 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 M L+K +T S PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 387 MALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 443 >gi|134093295|ref|YP_001098370.1| chromosomal replication initiation protein [Herminiimonas arsenicoxydans] gi|166214675|sp|A4G154|DNAA_HERAR RecName: Full=Chromosomal replication initiator protein DnaA gi|133737198|emb|CAL60241.1| Chromosomal replication initiator protein DnaA [Herminiimonas arsenicoxydans] Length = 460 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 140/452 (30%), Positives = 244/452 (53%), Gaps = 24/452 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S++L+ ++ P Y++W + L + ++ P F W+K ++ IT Sbjct: 2 ENFWQACSAQLEQELTPQQYSAWIKPLTPLDYEDGTLRIAAPNRFKLDWVKTQFASRITS 61 Query: 96 L---FQEEHSRIQGVEILVRSVALPSVEKTASSPSIT--KLSPINTNISKSPIILGKQTI 150 + F E +Q V L + + A+ S+ + + +N+ + PI Sbjct: 62 IAAQFWEVPVEVQ----FVLDPRLVAARRPAAQASVVSDRADDVPSNVLE-PIPSNATDH 116 Query: 151 SPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +P S +++ F +F+ G +N++A AA +A Y NPLF++ VGLGK Sbjct: 117 TPRRDQSRINTALTFDSFVTGKANQLARAAAIQVANNPGSSY-----NPLFLYGGVGLGK 171 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI N + PN+++ Y+ AE ++ +A + + K ++DLLLIDD+Q Sbjct: 172 THLIHAIGNQVLADNPNVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQ 231 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F GK Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + + Sbjct: 232 FFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPE 291 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 EMR +IL + A+ + + +++V VA+ + ++ REL+GA +++ F Sbjct: 292 LEMRVAILLKK-AVQEG----VTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKD 346 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+ + L L++ + +++ +E+IQ+ VA +NI D+ S +R + RPRQ+AMY Sbjct: 347 ITIEVVKDALKDLLSV-QNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMY 405 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 L+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 406 LAKELTQKSLPEIGELFGGRDHTTVLHAVRKI 437 >gi|81251061|gb|ABB69867.1| DNA replication initiator protein [Nitrosospira sp. TCH716] Length = 476 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 148/477 (31%), Positives = 245/477 (51%), Gaps = 47/477 (9%) Query: 46 LKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +N++ + +W + L+ ++ L P F+ W+K+ +L IT++ + + Sbjct: 15 FENELSAQQFNTWIKPLRLQLSDDSPEPVLTLIAPNRFVLQWVKDNFLSGITQMAENHFA 74 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI--ILGKQTISPVFGSPLDS 160 R + + + PS SPSI N + P+ + T SP +P D+ Sbjct: 75 RPVQLRLELAGQVAPS-----PSPSIGG----NNGMDSRPVTAVFDAPTGSPQ-KAPKDT 124 Query: 161 R-------------------FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + F F+TF+ G +N++A A +AE Y NP FI Sbjct: 125 KDVKDTKEKQEKNPTRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFFI 179 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+QAI N ++ P+ +V Y+ +E ++ A + K ++D Sbjct: 180 YGGVGLGKTHLIQAIGNFVVEHNPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLD 239 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G+ Sbjct: 240 LLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGL 299 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL L + ED + ++E V +A+ + ++ REL+GA ++V Sbjct: 300 TVAVEPPELEMRVAIL---LKKALMED--IILDESVAFFIAKHIRSNVRELEGALKRVVA 354 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F L+ E+A E L L+ + +++ IE+IQ+ VA +Y I ++ S +R R V Sbjct: 355 YSRFTGHALSLELAREALKDLLAV-QNRQISIENIQKTVADYYKIKVAEMYSKKRSRVVA 413 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 RPRQ+AM +SK +TP S P+IG G RDHTTVLH RK+ ++ +D + ++ L Sbjct: 414 RPRQMAMAISKELTPLSLPDIGEASGGRDHTTVLHGYRKIAELRASDPAVNRDFNTL 470 >gi|153854255|ref|ZP_01995554.1| hypothetical protein DORLON_01548 [Dorea longicatena DSM 13814] gi|149753030|gb|EDM62961.1| hypothetical protein DORLON_01548 [Dorea longicatena DSM 13814] Length = 462 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 251/467 (53%), Gaps = 33/467 (7%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 R+++++ + +W Q LK + V+ N V + V N +I+ +Y + E I Sbjct: 17 RVEHELSNVSFNTWIQPLKVYDVVDNTVFILVNMNASVEYIEKKYQLPLKVCIAE----I 72 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 G E V + S +L+ I ++ ++ + G L+ ++ F Sbjct: 73 TGTEYEVVFI----------SEDDDRLNEIQNMAIEANQKKKSKSAAEKAG--LNPKYTF 120 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+ G +N A A+ ++AE Y NPLF++ VGLGKTHL+ +IA+ + + Sbjct: 121 DTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSIAHFILDKN 175 Query: 225 PNLRVVYLTAEYFMWRFASAIRDN-CALN------LKDSLRNIDLLLIDDMQFLQGK-LI 276 P +V+Y+T+E F A+++ A N +D RN D+LLIDD+QF+ GK Sbjct: 176 PKKKVLYVTSETFTNELIEALKNGKTAGNESAMSKFRDKYRNNDVLLIDDIQFIIGKEST 235 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + +YE R +IL Sbjct: 236 QEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPNYETRMAIL 295 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA--D 394 + ++ + E K NI +VL ++A V T+ REL+G+ N+L+ + + +IA Sbjct: 296 QKKIELDHLE--KYNIPNDVLEYIATNVKTNIRELEGSLNKLIALYKLNNTGSIDIALAA 353 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L ++++ +++ E I +V++H+ +S DL N+R +V PRQ+AMYL + MT Sbjct: 354 EALKDIISSDNRREVTPELILDIVSEHFGVSIPDLKGNKRNAEIVFPRQIAMYLIRNMTE 413 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S +G G +DH+T+ H + K+E L+ D TL + ++K+ I+ Sbjct: 414 TSLKAVGVILGGKDHSTIKHGIEKIENELKADETLSNTINIIKKKIN 460 >gi|212697388|ref|ZP_03305516.1| hypothetical protein ANHYDRO_01958 [Anaerococcus hydrogenalis DSM 7454] gi|212675580|gb|EEB35187.1| hypothetical protein ANHYDRO_01958 [Anaerococcus hydrogenalis DSM 7454] Length = 459 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 149/482 (30%), Positives = 251/482 (52%), Gaps = 48/482 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDV--YASWFQRLKFHSVLHNIVHLSVPTN-----FLKAWI 85 +N E I + ++K V PD+ Y +W LK + N ++L +P N F + W+ Sbjct: 2 MNLEYITNELKEKMKMNV-PDLQQYETWIGILKPLNKYDNTIYLEIPKNDTKFIFDQIWV 60 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 L+ I + S VEI+ + P+ + + N+ + Sbjct: 61 PQ--LQAILNDINKRESTSYKVEIVAKD-----------GPNYEDILTLGRNVDDN---- 103 Query: 146 GKQTISPVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 G+ ++ V P L+ +F F++G SN++AL A+QS+AE ++ + NPLFI+ Sbjct: 104 GQLRLNNVNRYPKPLLEKNNIFENFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIY 163 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGKTHL+QAIA+ +K++ + V+YL++E F SA+R+N + R++D+ Sbjct: 164 GSSGLGKTHLMQAIAHEILKKRDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDM 223 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ K Q EF H L + KQ+V ++DRPP E++ L+ R+ SR G+ Sbjct: 224 LLIDDIQFIANKTGTQEEFFHTFEDLYNQGKQIVISSDRPPKEIKHLEERLVSRFGWGII 283 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLN--INEEVLMHVARTVTTSGRELDGAFNQLV 379 V + D+E R +IL QK+ +L ++ ++L ++A + T+ R+L+GA + Sbjct: 284 VDISKPDFETRVAIL-------QKKQDELGAVVDYKILEYIAENIETNIRDLEGALATSI 336 Query: 380 F-----RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 S+ + A + H + K++ EDIQ+ V+ Y++ DL R Sbjct: 337 ACAKSNNRSYVSLEDARLGVSSRVH----KDKKQISTEDIQKKVSDRYHVKLTDLRGKSR 392 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + +V PRQ+AMYL + + S + F +RDHTT++H K+E M+E D ++E+E Sbjct: 393 KKEIVMPRQIAMYLCRHLLSISLVSLANEF-NRDHTTIMHGHDKIEAMIEEDQDFRQEIE 451 Query: 495 LL 496 L Sbjct: 452 EL 453 >gi|120608715|ref|YP_968393.1| chromosomal replication initiation protein [Acidovorax citrulli AAC00-1] gi|120587179|gb|ABM30619.1| chromosomal replication initiator protein DnaA [Acidovorax citrulli AAC00-1] Length = 475 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 147/434 (33%), Positives = 232/434 (53%), Gaps = 23/434 (5%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV---RSVALPSVEKTASSPSI 128 V L V F WI+ +Y IT L + + + +E+ + SV V P+ Sbjct: 58 VTLLVANRFKLDWIRAQYAGRITALLEGLYGQPVTLELALAQRESVTRTVVRPVVQQPAA 117 Query: 129 TKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 +PI + S P +P F S L+ F T +EG++NR+A +AA +A Sbjct: 118 PAETPIGSAPSDEP------AAAP-FRSRLNPALTFETLVEGTANRMARSAAMHVAGSPG 170 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 H Y NPLFI+ VGLGKTHL+ A+ N ++ +P+ +V+Y+ AE F+ A + Sbjct: 171 HLY-----NPLFIYGGVGLGKTHLVHAVGNRLLQDKPDAKVLYIHAEQFVSDVVKAYQRR 225 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 K ++DLLLIDD+QF K Q EF + +LL +V +D P L + Sbjct: 226 TFDEFKAHYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLAN 285 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 + R+ SR G++V + + EMR +IL N+ E P EEV VA+ V ++ Sbjct: 286 IHERLVSRFDSGLTVTIEPPELEMRVAILINKARAESAEMP-----EEVAFFVAKNVRSN 340 Query: 368 GRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y I Sbjct: 341 VRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSI-QNRQISVENIQKTVADYYKIKV 399 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 400 ADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAGERQQL 459 Query: 487 ITLKKEVELLKRLI 500 L +++ +L++ + Sbjct: 460 TELNQQLHVLEQTL 473 >gi|28376975|ref|NP_783867.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum WCFS1] gi|254555170|ref|YP_003061587.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum JDM1] gi|300769106|ref|ZP_07078995.1| DNA-directed DNA replication initiator protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179192|ref|YP_003923320.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257539|sp|Q890K8|DNAA_LACPL RecName: Full=Chromosomal replication initiator protein DnaA gi|28269806|emb|CAD62703.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum WCFS1] gi|254044097|gb|ACT60890.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum JDM1] gi|300493346|gb|EFK28525.1| DNA-directed DNA replication initiator protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044683|gb|ADN97226.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 455 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/342 (38%), Positives = 199/342 (58%), Gaps = 16/342 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F TF+ G N++A AA ++E Y NPLF + VGLGKTHL+ A Sbjct: 117 TKLNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMY-----NPLFFYGGVGLGKTHLMHA 171 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N ++ P + Y+T+E F +AI+ ++ RN+DLLL+DD+QF K Sbjct: 172 IGNKLLETDPTSNIKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKE 231 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L + KQ+V +DR P+E+ L R+ SR + G+SV + D E R + Sbjct: 232 ATQEEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQDRLVSRFKWGLSVDITPPDLETRIA 291 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAEI 392 IL+N+ + E P ++ L ++A + ++ REL+GA Q R + +PI T+ + Sbjct: 292 ILRNKADLEGIEIP-----DDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLV 346 Query: 393 ADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 AD L S HL + + ++ I IQ VAK+++++ DL +R + +V PRQ+AMYLS+ Sbjct: 347 ADALKSLHL--SSKLSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRE 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 +T S P IG FG +DHTTV+HA K+ K L+TD L+K V Sbjct: 405 LTESSLPRIGNEFGGKDHTTVIHAHDKITKALKTDAELQKAV 446 >gi|270289892|ref|ZP_06196118.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici 7_4] gi|304385855|ref|ZP_07368199.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici DSM 20284] gi|270281429|gb|EFA27261.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici 7_4] gi|304328359|gb|EFL95581.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici DSM 20284] Length = 446 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/345 (37%), Positives = 203/345 (58%), Gaps = 18/345 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+SR+ F TF+ GS N++A AA +++ D G V NPLF + VGLGKTHL+ AI Sbjct: 110 LNSRYTFDTFVIGSGNQMAHAAAMAVS--DEPG---VLYNPLFFYGGVGLGKTHLMHAIG 164 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++ P RV Y+T+E F F ++I+ N + RN+DLLL+DD+QF K Sbjct: 165 HQLLENDPQTRVKYVTSEAFTNDFINSIQKNTTEEFHEKYRNVDLLLVDDVQFFADKEAT 224 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L ++ KQ+V +DR P+E+ L R+ SR + G+SV + D E R +IL Sbjct: 225 QEEFFHTFEALYNAQKQIVLTSDRLPNEIPKLQERLVSRFKWGLSVDITPPDLETRIAIL 284 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E P +E L +A + ++ REL+GA ++ ++A + +T ++ Sbjct: 285 REKAQADNVEIP-----DETLDFIANRIDSNIRELEGAMARI---QAYAQLQNAAITTDL 336 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L + I IQ VAK++++S DL +R++++V PRQ+AMYLS+ + Sbjct: 337 AADALRSLNFGSNLSHVTIPIIQDKVAKYFHVSVADLKGKKRLKSIVIPRQIAMYLSREL 396 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 T S P+IG FG +DHTTV+H+ K++ LET+ L ++++ LK Sbjct: 397 TDNSLPKIGTEFGGKDHTTVIHSCDKIKAALETNSDLARQIDDLK 441 >gi|251781469|ref|YP_002995770.1| chromosomal replication initiation protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390097|dbj|BAH80556.1| chromosomal replication initiator protein dnaA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126260|gb|ADX23557.1| chromosomal replication initiation protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 451 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 206/355 (58%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+ ++ F FI+G NR A+ A SIA ++ G T NPLFI GLGKTH Sbjct: 106 PAVTSDLNPKYSFENFIQGDENRWAVAA--SIAVANTPGTT---YNPLFIWGGPGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 161 LLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSL 220 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 221 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 281 FETRVAILTNKI-----QEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID 335 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T ++A E + G + + IE+IQ V K Y+++ ++ + +R + +V RQVA Sbjct: 336 TITVDVAAEAIRARKQDGPKMTVIPIEEIQTQVGKFYDVTVKEIKATKRTQDIVLARQVA 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 396 MFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKI 450 >gi|28197946|ref|NP_778260.1| chromosomal replication initiation protein [Xylella fastidiosa Temecula1] gi|32129493|sp|Q87FC6|DNAA_XYLFT RecName: Full=Chromosomal replication initiator protein DnaA gi|28056006|gb|AAO27909.1| chromosomal replication initiator [Xylella fastidiosa Temecula1] gi|307579027|gb|ADN62996.1| chromosomal replication initiation protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 439 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 254/477 (53%), Gaps = 46/477 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE RL+ + P+ +W + L+ +++ L P F+ ++ R Sbjct: 6 RCLE------------RLETEFPPEDVHTWLRPLQADQRGDSVI-LYAPNTFIIELVEER 52 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS-PINTNISKSPIILGK 147 YL + +L S G+ +V ++ S P T+L+ P++T G+ Sbjct: 53 YLGRLRELL----SYFSGIREVVLAIG--------SRPKTTELTVPVDTT--------GR 92 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + F LD+ + F F+EG SN++A AA A+ G T NPL ++ GL Sbjct: 93 LSQTVPFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQ--KPGDRT--HNPLLLYGGTGL 148 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A N + P +V+YL +E F A++D K ID LLIDD Sbjct: 149 GKTHLMFAAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDD 208 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + Sbjct: 209 IQFFAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDP 268 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 D+E R +I+ +++ + I +EV +A+ + ++ R+L+GA N LV R +F Sbjct: 269 PDFETRAAIV-----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTG 323 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E + E L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+A Sbjct: 324 RAVTIEFSQETLRDLLR-AQQQTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLA 382 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 M L+K +T S PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 383 MALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 439 >gi|161506635|ref|YP_001576583.1| chromosomal replication initiation protein [Lactobacillus helveticus DPC 4571] gi|172048332|sp|A8YW41|DNAA_LACH4 RecName: Full=Chromosomal replication initiator protein DnaA gi|160347624|gb|ABX26298.1| Chromosomal replication initiation protein [Lactobacillus helveticus DPC 4571] Length = 455 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 133/348 (38%), Positives = 204/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 119 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAIG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 174 HQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFFAKKEGI 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 234 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 294 RRK-----AEAEGLVIDDNTLDYIASQVDTNIRELEGA---LVKVQAYATIERADINVNL 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS+ + Sbjct: 346 AREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLSREL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK++I Sbjct: 406 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQIKTDTEIKSAVFDLKQMI 453 >gi|256545950|ref|ZP_05473305.1| ATPase involved in DNA replication initiation [Anaerococcus vaginalis ATCC 51170] gi|256398372|gb|EEU11994.1| ATPase involved in DNA replication initiation [Anaerococcus vaginalis ATCC 51170] Length = 464 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 147/485 (30%), Positives = 254/485 (52%), Gaps = 48/485 (9%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDV--YASWFQRLKFHSVLHNIVHLSVPTN-----F 80 K ++N E I + ++K V PD+ Y +W LK + + ++L +P N F Sbjct: 2 KESCKMNLEYITNELKEKMKMNV-PDLQQYETWIGILKPLNKYEDTIYLEIPKNDTKFIF 60 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 + W+ L++I + + +EI+ + P+ ++ + N+ Sbjct: 61 DQIWVPQ--LQSILNDINKRENTAYKIEIVAKD-----------GPNYDEVLSLGKNVDD 107 Query: 141 SPIILGKQTISPVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 G+ ++ V P L+ VF F++G SN++AL A+QS+AE ++ + N Sbjct: 108 D----GQLRLNNVNKYPKPLLEKNNVFKNFVQGKSNQLALAASQSVAENMANYKVSRVYN 163 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFI+ + GLGKTHL+QAIA+ ++++ + V+YL++E F SA+R+N + Sbjct: 164 PLFIYGASGLGKTHLMQAIAHEILEKRDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKY 223 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D+LLIDD+QF+ K Q EF H L + KQ+V ++DRPP E++ L+ R+ SR Sbjct: 224 RSVDMLLIDDIQFIANKTGTQEEFFHTFEDLYNQGKQIVISSDRPPKEIKHLEDRLVSRF 283 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN--INEEVLMHVARTVTTSGRELDGA 374 G+ V + D+E R +IL QK+ +L ++ ++L ++A + T+ R+L+GA Sbjct: 284 GWGIIVDISKPDFETRVAIL-------QKKQDELGAVVDYKILEYIAENIETNIRDLEGA 336 Query: 375 FNQLVF-----RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 + SF + A + H + KK+ EDIQ+ VA+ Y++ DL Sbjct: 337 LATSIACAKSNNRSFVSLEDARLGVSSRVH----NDRKKINAEDIQKKVAERYHVKLADL 392 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 R + +V PRQ+AMYL + + S + F +RDHTTV+H K++ ++E D Sbjct: 393 RGKSRKKEIVMPRQIAMYLCRDLLSISLVSLANEF-NRDHTTVMHGHDKIKDLMEEDQDF 451 Query: 490 KKEVE 494 ++E+E Sbjct: 452 RQEIE 456 >gi|323465558|gb|ADX69245.1| DNA-directed DNA replication initiator protein [Lactobacillus helveticus H10] Length = 469 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 133/348 (38%), Positives = 204/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 133 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAIG 187 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 188 HQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFFAKKEGI 247 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 248 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 307 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 308 RRK-----AEAEGLVIDDNTLDYIASQVDTNIRELEGA---LVKVQAYATIERADINVNL 359 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS+ + Sbjct: 360 AREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLSREL 419 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK++I Sbjct: 420 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQIKTDTEIKSAVFDLKQMI 467 >gi|315037231|ref|YP_004030799.1| chromosomal replication initiation protein [Lactobacillus amylovorus GRL 1112] gi|325955722|ref|YP_004286332.1| chromosomal replication initiation protein [Lactobacillus acidophilus 30SC] gi|312275364|gb|ADQ58004.1| chromosomal replication initiation protein [Lactobacillus amylovorus GRL 1112] gi|325332287|gb|ADZ06195.1| chromosomal replication initiation protein [Lactobacillus acidophilus 30SC] gi|327182550|gb|AEA30997.1| chromosomal replication initiation protein [Lactobacillus amylovorus GRL 1118] Length = 455 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/348 (37%), Positives = 204/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 119 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAIG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 174 HQMLLERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFFAKKEGI 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 234 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 294 RRK-----AESEGLTIDDNTLDYIASQVDTNIRELEGA---LVKVQAYATIEKADIDVNL 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS+ + Sbjct: 346 AREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLSREL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK+++ Sbjct: 406 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKTDADIKTAVFDLKQML 453 >gi|219846957|ref|YP_002461390.1| chromosomal replication initiation protein [Chloroflexus aggregans DSM 9485] gi|254777892|sp|B8GBK7|DNAA_CHLAD RecName: Full=Chromosomal replication initiator protein DnaA gi|219541216|gb|ACL22954.1| chromosomal replication initiator protein DnaA [Chloroflexus aggregans DSM 9485] Length = 478 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 152/493 (30%), Positives = 252/493 (51%), Gaps = 46/493 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N I+ S L++Q Y + + S+ + I + V + K ++NR L Sbjct: 1 MNLTHIWKTTLSALQSQTSRHDYEALLRPAMLLSLDNGIARIGVSSPIQKEGLENRLLMP 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + +R+ G + V+ + + A P +T T+++ P + +P Sbjct: 61 LRNAL----TRVVGYPVQVQVL----IANQALRPEVTAAPRNGTHVALEPEPFVTEPPTP 112 Query: 153 VFGSP--------------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 F S L+ R+ F++FI GSSNR+A A ++A+ Y Sbjct: 113 AFTSGNGNGERAVQLDLASAMRSGMLNPRYTFASFIVGSSNRLAHAACLAVADNPGQAY- 171 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPLF++ VGLGKTHLL AI N + R P + V+Y+++E F +AIR Sbjct: 172 ----NPLFLYGGVGLGKTHLLHAIGNRVLDRDPEINVLYVSSEKFTNDLINAIRRQQTEE 227 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + RNID+LLIDD+QF+ GK Q EF H N+L +AK +V ++DRPP + +L+ R Sbjct: 228 FRMRYRNIDVLLIDDIQFIAGKDATQEEFFHTFNTLHSAAKHIVISSDRPPKAILTLEER 287 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSR + G+ V + D E R +IL+ ++ E +++ +EV+ +A + ++ REL Sbjct: 288 LRSRFEWGLIVDVQPPDLETRTAILR-----AKAEQMSVHVPDEVIDFLAHKIQSNIREL 342 Query: 372 DGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 +G+ N++ ++A + +T + A L+ L+ +++ E I ++V++HY I Sbjct: 343 EGSLNRVA---AYAELNRLPITIDTATAALADLLGNQRRRRISAEAILQIVSEHYGIEVE 399 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 L + R R VV PRQVAMYL + T S +IG G RDHTTV++ K+ + + TD Sbjct: 400 QLRARNRSRHVVVPRQVAMYLLREETESSLVDIGNLLGGRDHTTVMYGCEKIAEEINTDS 459 Query: 488 TLKKEVELLKRLI 500 L+ EV ++ I Sbjct: 460 HLRSEVMAIRERI 472 >gi|312864110|ref|ZP_07724345.1| chromosomal replication initiator protein DnaA [Streptococcus vestibularis F0396] gi|322515792|ref|ZP_08068737.1| DNA-directed DNA replication initiator protein [Streptococcus vestibularis ATCC 49124] gi|311100342|gb|EFQ58550.1| chromosomal replication initiator protein DnaA [Streptococcus vestibularis F0396] gi|322125754|gb|EFX97072.1| DNA-directed DNA replication initiator protein [Streptococcus vestibularis ATCC 49124] Length = 454 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 145/425 (34%), Positives = 231/425 (54%), Gaps = 31/425 (7%) Query: 90 LETITKLFQEEHSR----IQGVEILVRSVALPSVEKTA----SSPSITKLSPINTNISKS 141 LE + KLF E++ + + G E+ + + V A P+++ N ++ Sbjct: 46 LEEVKKLFWEKNMQSFILMTGFEVYNSEIKVEYVFDEALVSEIKPTLSSNDFSNKREQQT 105 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P + P S L+S++ F FI+G NR ++ A+ ++A DS G T NPLFI Sbjct: 106 PAL-------PTLNSDLNSKYTFDNFIQGDENRWSVAASLAVA--DSPGAT---YNPLFI 153 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL AI N + P R+ Y+TAE F+ F IR + LK R++D Sbjct: 154 YGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVLHIRLDKMDELKLKYRHLD 213 Query: 262 LLLIDDMQFLQGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +LLIDD+Q L K Q EF + N L D+ KQ+V +DR P +L ++ R+ +R + Sbjct: 214 VLLIDDIQSLAKKSTQATQEEFFNTFNVLHDNNKQIVLTSDRNPDQLNEMEERLVTRFKW 273 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ- 377 G++V + D+E R +IL N++ D + E + ++A ++ R+L+GA Sbjct: 274 GLTVNITPPDFETRVAILTNKIM-----DYDYHFPPETIEYLAGQFDSNVRDLEGALKDI 328 Query: 378 -LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 LV +T E+A E + + ++ + + IEDIQ V K YN++ ++ + +R Sbjct: 329 SLVANVRQLDTITVEVAAEAIRARKIDGPKLTLIPIEDIQSEVGKFYNVTVKEIKATKRT 388 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 + +V RQVAMYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E++ Sbjct: 389 QNIVLARQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIDT 448 Query: 496 LKRLI 500 +K I Sbjct: 449 IKNKI 453 >gi|118594214|ref|ZP_01551561.1| dnaA; chromosomal replication initiator protein [Methylophilales bacterium HTCC2181] gi|118439992|gb|EAV46619.1| dnaA; chromosomal replication initiator protein [Methylophilales bacterium HTCC2181] Length = 445 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 147/453 (32%), Positives = 240/453 (52%), Gaps = 39/453 (8%) Query: 55 YASWFQRL--KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 Y +W + L + + L +V +S P F+ W+K R + + L + + V +++ Sbjct: 23 YTTWIKPLNGEINEKLKQLV-ISAPNQFVLQWVKERLNDKLCSLLSDNANISSIVYTVIK 81 Query: 113 SVALP-SVEK-TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 P S+E AS ++ K TN L+ F F F+ G Sbjct: 82 KTKGPASLEAPKASEEAVPKTKSNKTN-------------------GLNKSFNFENFVTG 122 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 +N++A AA+ IAE Y NPLFI+ VGLGKTHL+ AI N QPN +V Sbjct: 123 KANQLACAAARQIAEKPGTTY-----NPLFIYGGVGLGKTHLMHAIGNHLKAIQPNAKVK 177 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 YL AE ++ A + + K + ++DLLLIDD+QF+ K Q EF + N+L++ Sbjct: 178 YLHAERYVHDVVKAYENKDFDSFKKNYHSLDLLLIDDIQFIAKKNRTQEEFFYAFNTLIE 237 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + KQ++ D P E+ +D R+R+R G++V + + EMR +IL + + + K Sbjct: 238 NKKQIIITCDSYPKEIVGVDERLRTRFSWGLTVSIDPPELEMRVAIL-----LKKALEHK 292 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETK 407 + ++EEV VA+ + ++ REL+GA N++V +F PI +A E L L+ + Sbjct: 293 IKLSEEVAFFVAKQIRSNVRELEGALNRIVAMSNFTGKPIDLG-LAKESLKDLIAV-RGR 350 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ +E+IQ+ VA +Y I +D+ S +R R RPRQ+AM L++ +T SFPEI FG R Sbjct: 351 QISVENIQKTVADYYKIKISDIHSKKRSRNFSRPRQIAMSLTRELTNLSFPEIAEAFGGR 410 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 HTTV+HA ++E + D + +++ L +++ Sbjct: 411 HHTTVMHACDEIESLRLGDQGIGQDLGFLTQVL 443 >gi|163755431|ref|ZP_02162551.1| chromosomal replication initiator protein [Kordia algicida OT-1] gi|161324851|gb|EDP96180.1| chromosomal replication initiator protein [Kordia algicida OT-1] Length = 475 Score = 224 bits (571), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 148/486 (30%), Positives = 258/486 (53%), Gaps = 27/486 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V +S++ S +K+ + P Y +WF+ +K + + + + VP+ F W++ Y+ Sbjct: 1 MSVTAQSVWDNCLSFIKDNIQPQAYKTWFEPIKPVKLTNKALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----SVALPSVEKTASSP-SITKLSPINTNI-SKSP- 142 + + +E + +++ P EK S+ S K I+ I +KSP Sbjct: 61 KLLKVALVKELGNTARLVYIIKMENTYGNKKPFTEKIPSANRSNVKAQEIDVPIKNKSPE 120 Query: 143 -----IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 II G + + S L+ + F F+EG SNR+A +A ++A + G T+ N Sbjct: 121 LKNPFIIPGIRNVK--IESQLNPNYNFDNFLEGDSNRLARSAGMAVA--NKPGGTS--FN 174 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PL I VGLGKTH+ AI + P V+Y++AE F ++ +++ N + Sbjct: 175 PLLIFGGVGLGKTHIAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNTRNDFIHFY 234 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 + ID+L+IDD+QF GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR Sbjct: 235 QLIDVLIIDDVQFFSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+S L D+E R SI+KN+L E P +++ +VA+ + ++ REL+GA Sbjct: 295 KWGLSAELQTPDFETRVSIVKNKLYRDGVEMP-----NDIVEYVAKNIKSNVRELEGAII 349 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 L+ + SF +T E+A +++ V + +++ I+ IQ++V+ ++ + + L S R Sbjct: 350 SLIAQSSFNKKEVTIELAKQVVEKFVKNTK-REVSIDYIQKVVSDYFQMDVSTLQSKTRK 408 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K VE Sbjct: 409 RHIVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLSSTDKQFRKYVED 468 Query: 496 LKRLIS 501 L + +S Sbjct: 469 LTKKLS 474 >gi|58336355|ref|YP_192940.1| chromosomal replication initiation protein [Lactobacillus acidophilus NCFM] gi|71151800|sp|Q5FN15|DNAA_LACAC RecName: Full=Chromosomal replication initiator protein DnaA gi|58253672|gb|AAV41909.1| chromosomal replication initiator protein [Lactobacillus acidophilus NCFM] Length = 455 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/348 (37%), Positives = 205/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 119 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAIG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 174 HQMLVERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFFAKKEGI 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 234 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I+++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 294 RRK-----AEAEGLTIDDDTLDYIASQVDTNIRELEGA---LVKVQAYATIEKADIDINL 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS+ + Sbjct: 346 AREALVDLKLVQKNRGLQIPKIQEVVANYFQTSTAELKGKKRVRQIVIPRQIAMYLSREL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK+++ Sbjct: 406 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKTDADIKTAVFDLKQML 453 >gi|225867618|ref|YP_002743566.1| chromosomal replication initiator protein [Streptococcus equi subsp. zooepidemicus] gi|259645261|sp|C0MC62|DNAA_STRS7 RecName: Full=Chromosomal replication initiator protein DnaA gi|225700894|emb|CAW97552.1| chromosomal replication initiator protein [Streptococcus equi subsp. zooepidemicus] Length = 450 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 205/355 (57%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+ ++ F FI+G NR A+ A SIA ++ G T NPLFI GLGKTH Sbjct: 105 PAVQSDLNPKYSFDNFIQGDENRWAVAA--SIAVANTPGTT---YNPLFIWGGPGLGKTH 159 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 160 LLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFRNLDLLLIDDIQSL 219 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 220 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPD 279 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 280 FETRVAILTNKI-----QEYNFVFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID 334 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +IA E + G + + IE+IQ V K Y ++ ++ + +R + +V RQVA Sbjct: 335 TITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQDIVLARQVA 394 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 395 MFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIGQDESLRIEIETIKNKI 449 >gi|326314824|ref|YP_004232496.1| chromosomal replication initiator protein DnaA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371660|gb|ADX43929.1| chromosomal replication initiator protein DnaA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 473 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 157/498 (31%), Positives = 251/498 (50%), Gaps = 50/498 (10%) Query: 20 KTPNVDVD--------KRCLEVNCESI----FTIVSSRLKNQVGPDVYASWFQRLKFHSV 67 ++P+ D D + C+E + + F L QV PD Sbjct: 7 RSPDFDTDADPGQGLWQACVEQLAQDLPEQQFNTWIKPLVAQVAPDF------------- 53 Query: 68 LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV---RSVALPSVEKTAS 124 + V L V F WI+ +Y IT L + + + +E+ + SV V Sbjct: 54 --SKVTLLVANRFKLDWIRAQYAGRITALLEGLYGQPVTLELALAQRESVTRTVVRPVVQ 111 Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 P+ +PI + + P +P F S L+ F T +EG++NR+A +AA +A Sbjct: 112 QPTAPAETPIGSTPADEP------AAAP-FRSRLNPALTFETLVEGTANRMARSAAMHVA 164 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 H Y NPLFI+ VGLGKTHL+ A+ N ++ +P+ +V+Y+ AE F+ A Sbjct: 165 GSPGHLY-----NPLFIYGGVGLGKTHLVHAVGNRLLQDKPDAKVLYIHAEQFVSDVVKA 219 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 + K ++DLLLIDD+QF K Q EF + +LL +V +D P Sbjct: 220 YQRRTFDEFKAHYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPK 279 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L ++ R+ SR G++V + + EMR +IL N+ E P EEV VA+ Sbjct: 280 GLANIHERLVSRFDSGLTVTIEPPELEMRVAILINKARAESAEMP-----EEVAFFVAKN 334 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V ++ REL+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y Sbjct: 335 VRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSI-QNRQISVENIQKTVADYY 393 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 394 KIKVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAGE 453 Query: 483 LETDITLKKEVELLKRLI 500 + L +++ +L++ + Sbjct: 454 RQQLTELNQQLHVLEQTL 471 >gi|315640356|ref|ZP_07895472.1| DNA-directed DNA replication initiator protein [Enterococcus italicus DSM 15952] gi|315483892|gb|EFU74372.1| DNA-directed DNA replication initiator protein [Enterococcus italicus DSM 15952] Length = 446 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 206/348 (59%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ AI Sbjct: 110 LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLMHAIG 164 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + ++++PN R+ Y+++E F F ++I+ ++ R +DLLL+DD+QFL K Sbjct: 165 HQMLQKRPNARIKYVSSENFTNDFINSIKRKEMEEFRNEYRTVDLLLVDDIQFLVNKEGT 224 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E R +IL Sbjct: 225 QEEFFNTFEELYLNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETRTAIL 284 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I ++ L ++A + ++ REL+GA LV +FA + +T + Sbjct: 285 RKK-----AEAENLEIPDDTLSYIAGQIDSNIRELEGA---LVRVQAFAAMRNVDITTSL 336 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L +T ++ I IQ VAK+Y+I DL +RV+++V PRQ+AM+LS+ + Sbjct: 337 AAEALKALKSTHHLNQVSILHIQEEVAKYYHIPLKDLKGKKRVKSIVVPRQIAMFLSREL 396 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG FG +DHTTV+HA K++ +L++D L+ EV +K++I Sbjct: 397 TDNSLPKIGAEFGGKDHTTVIHAHEKIQHLLQSDAILQNEVAEIKQII 444 >gi|224827186|ref|ZP_03700281.1| chromosomal replication initiator protein DnaA [Lutiella nitroferrum 2002] gi|224600579|gb|EEG06767.1| chromosomal replication initiator protein DnaA [Lutiella nitroferrum 2002] Length = 466 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 148/468 (31%), Positives = 242/468 (51%), Gaps = 27/468 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +RL+ ++ + +W + L + + V L P F+ +IK+R+L I +L E Sbjct: 13 ARLEGELSSQQFNTWIKPLA-AELTEDGVQLLAPNRFIMQFIKDRFLGRIEELAVELMGE 71 Query: 104 IQGVEILVRSV-ALPSV--EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP--- 157 + VE+ + S A P+V K A+ + + +P KQ G Sbjct: 72 VP-VELRLGSPNAAPAVVPAKPAAPSGKSAPAGGAAPAVATP---AKQAAVKAIGGGHES 127 Query: 158 --LDSRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ F F T + G N++A AA IAE Y NPLF++ VGLGKTHL+Q Sbjct: 128 TRLNPAFTFDTLVTGKGNQLARAAAMQIAENPGDQAY-----NPLFVYGGVGLGKTHLIQ 182 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P ++ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 183 AIGNHVYQKNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDDIQFFAGK 242 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF + N+LL+S KQV+ D P ++E +D R+ SR G++V + + EMR Sbjct: 243 NRTMEEFFYAFNALLESGKQVIMTCDTYPKQIEGMDERLISRFSWGLTVEIQPPELEMRV 302 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL + + E + ++ V +A+ V ++ REL+GA ++V F ++ E+ Sbjct: 303 AIL-----MKKAEADSIKLDHTVAFFIAQNVRSNVRELEGALKRVVAYARFTNQSISLEL 357 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L ++ G +++ ++ IQ+ VA++Y I D+ S +R R + RPRQ+AM L+K + Sbjct: 358 VKEALKDILAAG-NRQVTVDAIQKTVAEYYKIKLGDMHSKKRSRDIARPRQIAMALAKEL 416 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IG FG RDHTTVLHA + + +M +D + + + L +++ Sbjct: 417 TQLSLPNIGDAFGGRDHTTVLHACKTIAEMRGSDADIGHDYDTLLQML 464 >gi|93004834|ref|YP_579271.1| chromosomal replication initiator protein DnaA [Psychrobacter cryohalolentis K5] gi|92392512|gb|ABE73787.1| chromosomal replication initiator protein DnaA [Psychrobacter cryohalolentis K5] Length = 481 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 148/492 (30%), Positives = 255/492 (51%), Gaps = 39/492 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +I+ + L+ V +V+ W + L H + ++ L+ P ++ +IK +LE Sbjct: 2 IDTANIWDKCLNDLRYHVKDNVFTMWLRPLSAHQENNTLIILA-PNDYFVTYIKKNHLED 60 Query: 93 ITKLFQEEHSRIQGVEILVR---------------SVALPSVEKTASSPSITKLSPINTN 137 I +L + HS+ E++VR S +L S + + +PS I+ N Sbjct: 61 IQQLVAK-HSQGSIEEVIVRVDNAGRDIDDSSSLQSGSLFSEDNLSPTPSNHDFETIHHN 119 Query: 138 ISKSPIILGKQTISPVFGSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 +K+ I + + + L+ F F TF+ G SN +A A + + S Sbjct: 120 NAKADIDANMRHAEAIDSADAKSLNYLNPDFTFETFVTGKSNNLAYKACYELGKRQSKN- 178 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 R NPLFI+ GLGKTHL+ ++A+ +K N Y T+E F+ + ++R+N Sbjct: 179 ---RHNPLFIYGPSGLGKTHLMHSVAHRYLKNNQNF--YYFTSEKFINQLVYSLRNNKIE 233 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + K ++ +DLL++DD+ L GK +EF L KQ++ A+DR PS++ D Sbjct: 234 DFKKKIKKVDLLIVDDIHVLAGKTKSSNEFLTLFADFTSGDKQLILASDRHPSQMTEFDE 293 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R RSR G++V + + + R IL+ + A PK E + +A+ V ++ R Sbjct: 294 RFRSRFSWGLTVAVDPPEIDTRVQILQRKAASYGMSLPK-----ECALFIAQNVVSNVRR 348 Query: 371 LDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 L+GA NQ+ + API T E+ L +V + + +++I+++VA++Y+++ D Sbjct: 349 LEGALNQVFANANLTGAPI-TLEMVQYALKDIV-AMRVQAVNMDNIRKVVAEYYDVTIKD 406 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 +L +R R++ RPRQ+AM LS+ +T SFPEIG+ FG RDHTTV+HA KV ++ D Sbjct: 407 MLGRKRTRSIARPRQIAMALSRELTSESFPEIGQSFGGRDHTTVMHACDKVNELRAADPA 466 Query: 489 LKKEVELLKRLI 500 K+ + L ++ Sbjct: 467 FDKDYKTLALML 478 >gi|195977157|ref|YP_002122401.1| chromosomal replication initiation protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226735849|sp|B4U5G8|DNAA_STREM RecName: Full=Chromosomal replication initiator protein DnaA gi|195973862|gb|ACG61388.1| chromosomal replication initiator protein DnaA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 450 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 205/355 (57%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+ ++ F FI+G NR A+ A SIA ++ G T NPLFI GLGKTH Sbjct: 105 PAVQSDLNPKYSFDNFIQGDENRWAVAA--SIAVANTPGTT---YNPLFIWGGPGLGKTH 159 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 160 LLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFRNLDLLLIDDIQSL 219 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 220 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPD 279 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 280 FETRVAILTNKI-----QEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID 334 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +IA E + G + + IE+IQ V K Y ++ ++ + +R + +V RQVA Sbjct: 335 TITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQDIVLARQVA 394 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 395 MFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIGQDESLRIEIETIKNKI 449 >gi|191636825|ref|YP_001985991.1| chromosomal replication initiation protein [Lactobacillus casei BL23] gi|226735820|sp|B3W6N4|DNAA_LACCB RecName: Full=Chromosomal replication initiator protein DnaA gi|190711127|emb|CAQ65133.1| Chromosomal replication initiator protein dnaA [Lactobacillus casei BL23] gi|327380862|gb|AEA52338.1| DNA-directed DNA replication initiator protein [Lactobacillus casei LC2W] gi|327384028|gb|AEA55502.1| DNA-directed DNA replication initiator protein [Lactobacillus casei BD-II] Length = 449 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 146/473 (30%), Positives = 252/473 (53%), Gaps = 36/473 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLET 92 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA W KN + Sbjct: 3 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTKDKLEIEVPASLHKAYWEKNLVTKV 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ E ++++ +++ L T P++ + Q ++ Sbjct: 63 VEGVY--EFAQLEVDPVIMTKDELQPAPATDQRPAVEE---------------DDQNLTF 105 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ F F+ G N++A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 106 KAKTHLNPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTY-----NPLFIYGGVGLGKTHL 160 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N + P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 161 MQAIGNLVLDNNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFG 220 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 221 DKEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLET 280 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+N+ + ED L+I ++ L ++A + ++ R+L+GA LV +F+ + Sbjct: 281 RIAILRNK---ADAED--LSIPDDTLSYIAGQIESNVRDLEGA---LVRVQAFSTMKNED 332 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMY Sbjct: 333 ITTSLAADALKALKLDDRSGQLTIPQILNAVAKYFQLTVQDLKGKKRVKQIVIPRQIAMY 392 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ MT S P+IG+ G +DHTTV+HA K+ + TD LK +V L+ ++ Sbjct: 393 LAREMTDNSLPKIGQEIGGKDHTTVIHAHEKIMASMTTDENLKAQVIELRNIL 445 >gi|71901968|ref|ZP_00684019.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|71728273|gb|EAO30453.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] Length = 443 Score = 224 bits (570), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 161/477 (33%), Positives = 254/477 (53%), Gaps = 46/477 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE RL+ + P+ +W + L+ +++ L P F+ ++ R Sbjct: 10 RCLE------------RLETEFPPEDVHTWLRPLQADQRGDSVI-LYAPNPFIIELVEER 56 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS-PINTNISKSPIILGK 147 YL + +L S G+ +V ++ S P T+L+ P++T G+ Sbjct: 57 YLGRLRELL----SYFSGIREVVLAIG--------SRPKTTELTVPVDTT--------GR 96 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + F LD+ + F F+EG SN++A AA A+ G T NPL ++ GL Sbjct: 97 LSQTVPFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQ--KPGDRT--HNPLLLYGGTGL 152 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A N + P +V+YL +E F A++D K ID LLIDD Sbjct: 153 GKTHLMFAAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDD 212 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + Sbjct: 213 IQFFAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDP 272 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 D+E R +I+ +++ + I +EV +A+ + ++ R+L+GA N LV R +F Sbjct: 273 PDFETRAAIV-----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTG 327 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E + E L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+A Sbjct: 328 RAVTIEFSQETLRDLLR-AQQQTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLA 386 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 M L+K +T S PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 387 MALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 443 >gi|227902594|ref|ZP_04020399.1| DNA-directed DNA replication initiator protein [Lactobacillus acidophilus ATCC 4796] gi|227869683|gb|EEJ77104.1| DNA-directed DNA replication initiator protein [Lactobacillus acidophilus ATCC 4796] Length = 465 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 132/348 (37%), Positives = 205/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 129 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAIG 183 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 184 HQMLVERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFFAKKEGI 243 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 244 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 303 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I+++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 304 RRK-----AEAEGLTIDDDTLDYIASQVDTNIRELEGA---LVKVQAYATIEKADIDINL 355 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS+ + Sbjct: 356 AREALVDLKLVQKNRGLQIPKIQEVVANYFQTSTAELKGKKRVRQIVIPRQIAMYLSREL 415 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK+++ Sbjct: 416 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKTDADIKTAVFDLKQML 463 >gi|332638152|ref|ZP_08417015.1| chromosomal replication initiation protein [Weissella cibaria KACC 11862] Length = 470 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 140/392 (35%), Positives = 219/392 (55%), Gaps = 28/392 (7%) Query: 126 PSITKLSPINTNISKSPII---------LGKQTISPVF--GSPLDSRFVFSTFIEGSSNR 174 PS+T +SP T++ + P G ++ F S L+ F F TF+ NR Sbjct: 90 PSVTYISPQPTSLFEVPATDAAPEQQNTTGTSPVAADFVTQSILNPEFRFETFVSSDENR 149 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A AQ++A D+ G + NPL I+ VGLGKTHL+QAI N ++ PN +V ++T Sbjct: 150 EAYAVAQAVA--DNPG---TQWNPLLIYGGVGLGKTHLMQAIGNKVLENNPNAKVKFITT 204 Query: 235 EYFMWRFASAIRDNCALN--LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 E F+ F A+R K R+ DLLL+DD+QFL GK IQ EF + N++ Sbjct: 205 EDFINDFTEALRRGQKETEAFKREYRSTDLLLVDDVQFLAGKEKIQEEFFNTFNAITREN 264 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 Q+V +D+ P E+ L+ R+ +R G S + D R +IL+N+ S +E+ LN Sbjct: 265 HQIVLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNK---SDQEN--LN 319 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKM 409 I +V+ +A V T+ R+L+G FNQ+ + FA P+ T + A ++L + N + + Sbjct: 320 IPNDVIDEIAAAVDTNVRDLEGVFNQVAGKLRFASQPV-TVDTARDILETM-NFKRQRAI 377 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I IQ VAK ++++ DL +R + +V PRQ+AMYL++ +T S P+IGR FG +DH Sbjct: 378 TIPIIQDTVAKFFDVTVQDLNGKKRNKEIVVPRQIAMYLARELTQDSLPQIGRAFGGKDH 437 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TTV+H+ K++ +E D L +V+ ++ +S Sbjct: 438 TTVMHSTEKIDNAIENDALLADQVQKIREELS 469 >gi|299143462|ref|ZP_07036542.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517947|gb|EFI41686.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 447 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 140/473 (29%), Positives = 260/473 (54%), Gaps = 51/473 (10%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDV-YASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKN 87 ++ N +I+ V ++L+ Q V + +WF+ + + I +++VP F++ + N Sbjct: 1 MDSNLSNIWNDVMNKLRQQSMSTVSFDTWFKDMNLKKIDEEKKIFYVTVPIRFIRERLAN 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 S+++ ++ ++ V + + ++ P+ K Sbjct: 61 N------------QSQLKFIKKCIKEVTGCEYDPVILTEDEDEIIPLRK----------K 98 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE-----VDSHGYTTVRLNPLFIH 202 T+ P + L+ +++F F+ G SN A AA ++AE D+H NPLFI+ Sbjct: 99 DTLLP--ETRLNPKYIFENFVVGKSNEFAHAAALAVAENYLDPSDAHS------NPLFIY 150 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAI + ++ PN +++Y+T+E F ++I+ N + ++ R +DL Sbjct: 151 GGVGLGKTHLMQAIGHFVHQQDPNKKILYVTSEQFTNELINSIQTNKNEHFRNKYRKVDL 210 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ K Q EF H N L +S KQ+V +D+PP +++SL+ R+ SR G+ Sbjct: 211 LLIDDIQFIADKDRTQEEFFHTFNELHESNKQIVLTSDKPPKDIKSLEERLISRFAWGLV 270 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V +G D E R +IL+ S+ + N+ + ++ +A+ V ++ REL+GA ++++ Sbjct: 271 VDIGTPDLETRIAILR-----SKADSEGFNVPDNIINFIAQNVKSNIRELEGALSRIM-- 323 Query: 382 HSFAPILTAEIADE----LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 +++ + E+ ++ +L + NT + K + + I+ +VAK++ I+ D+ S +R R Sbjct: 324 -AYSKLTVGEMTEQTAAIVLRDIYNTKKKKVITSKLIKEVVAKNFRITIEDIDSKKRTRN 382 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 + PRQ+AMY+++ +T S P+IG FG RDH+TV+HA K+E + +D +L+ Sbjct: 383 IAYPRQIAMYITRDLTELSLPKIGEEFGGRDHSTVIHAYNKIESDMASDTSLR 435 >gi|81251045|gb|ABB69855.1| DNA replication initiator protein [Nitrosospira sp. 9SS1] Length = 476 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 151/470 (32%), Positives = 247/470 (52%), Gaps = 33/470 (7%) Query: 46 LKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +N++ + +W + L+ + L P F+ W+K+ +L IT++ + + Sbjct: 15 FENELSAQQFNTWIKPLRLQLSDDSPEPALTLIAPNRFVLQWVKDNFLSGITQMAENHFA 74 Query: 103 RIQGVEI----LVRSVALPSV--EKTASSPSITKLSPINT-NISKSPIILG-------KQ 148 R +++ V + A PS +S SIT + T + K P KQ Sbjct: 75 RPVQLQLELAGQVPASASPSTGGNNGMNSHSITAVFDAPTESAQKVPKDTKDTKDTKEKQ 134 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P + L+ F F+TF+ G +N++A A +AE Y NP FI+ VGLG Sbjct: 135 EKNP---TRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFFIYGGVGLG 186 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI N ++ P +V Y+ +E ++ A + K ++DLLLIDD+ Sbjct: 187 KTHLIQAIGNFVVEHNPAAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSLDLLLIDDI 246 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G++V + Sbjct: 247 QFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWGLTVAVEPP 306 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + EMR +IL L + ED + ++E V +A+ + ++ REL+GA ++V F Sbjct: 307 ELEMRVAIL---LKKALMED--IILDESVAFFIAKHIRSNVRELEGALKRVVAYSRFTGH 361 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 LT ++A E L L+ + +++ IE+IQ+ VA +Y I ++ S +R R V RPRQ+AM Sbjct: 362 ALTLDLAREALKDLLAV-QNRQISIENIQKTVADYYKIKVAEMYSKKRSRVVARPRQMAM 420 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 421 AISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNTL 470 >gi|312872761|ref|ZP_07732826.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2062A-h1] gi|315654131|ref|ZP_07907047.1| DNA-directed DNA replication initiator protein [Lactobacillus iners ATCC 55195] gi|325913710|ref|ZP_08176072.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 60-B] gi|311091803|gb|EFQ50182.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2062A-h1] gi|315488827|gb|EFU78473.1| DNA-directed DNA replication initiator protein [Lactobacillus iners ATCC 55195] gi|325477069|gb|EGC80219.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 60-B] Length = 453 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 157/479 (32%), Positives = 250/479 (52%), Gaps = 38/479 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKA-WIKNRY 89 ++ E + + +K + Y +WF+ K S N + SV + K W KN Sbjct: 2 LDLEKFWQFFTDNMKKRYSEVAYNAWFKNTKPLSFDKNSKQMTISVESPVSKGYWEKN-- 59 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 ++L QE ++ +EI+ + K A + + T + P+I Sbjct: 60 --LASQLIQEAYAYTD-MEII-------PIFKIAGDTNSERFVVHKTQKKQEPVIENNHN 109 Query: 150 ISPVFGSPL--DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 F L +S++ F TF++G N++A AA ++A+ Y NPLFI VGL Sbjct: 110 ---EFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGL 161 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD Sbjct: 162 GKTHLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDD 221 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + Sbjct: 222 IQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITP 281 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ + E L I++ L +VA V T+ REL+GA LV + A Sbjct: 282 PDLETRIAILRKKA-----EADGLGIDDNTLDYVASQVDTNIRELEGA---LVKVQAHAT 333 Query: 387 I----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I + +A E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PR Sbjct: 334 IEREDINLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPR 393 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AMYLS+ +T S P+IG+ FG +DHTTV+HA K+E+ L+TD +K V LK +++ Sbjct: 394 QIAMYLSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKIERSLKTDSEIKSAVYDLKAMLN 452 >gi|227893838|ref|ZP_04011643.1| DNA-directed DNA replication initiator protein [Lactobacillus ultunensis DSM 16047] gi|227864327|gb|EEJ71748.1| DNA-directed DNA replication initiator protein [Lactobacillus ultunensis DSM 16047] Length = 460 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 204/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 124 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAIG 178 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN + VY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 179 HQMLVERPNAKAVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFFTKKEGI 238 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 239 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 298 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I+++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 299 RRKA-----EAEGLTIDDDTLDYIASQVDTNIRELEGA---LVKVQAYATIEKADINVNL 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS+ + Sbjct: 351 AREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLSREL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK+++ Sbjct: 411 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKTDADIKTAVFDLKQML 458 >gi|15836606|ref|NP_297294.1| chromosomal replication initiation protein [Xylella fastidiosa 9a5c] gi|14194685|sp|Q9PHE3|DNAA_XYLFA RecName: Full=Chromosomal replication initiator protein DnaA gi|9104761|gb|AAF82814.1|AE003855_1 chromosomal replication initiator [Xylella fastidiosa 9a5c] Length = 439 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 162/477 (33%), Positives = 253/477 (53%), Gaps = 46/477 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE RL+ + P+ +W + L+ ++V L P F+ ++ R Sbjct: 6 RCLE------------RLETEFPPEDVHTWLRPLQADQRGDSVV-LYAPNPFIIELVEER 52 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS-PINTNISKSPIILGK 147 YL + +L S G+ +V ++ S P T+L P++T G+ Sbjct: 53 YLGRLRELL----SYFSGIREVVLAIG--------SRPKTTELPVPVDTT--------GR 92 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + F LD+ + F F+EG SN++A AA A+ G T NPL ++ GL Sbjct: 93 LSSTVPFNGNLDTHYNFDNFVEGRSNQLARAAAWQAAQ--KPGDRT--HNPLLLYGGTGL 148 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A N + P +V+YL +E F A++D K ID LLIDD Sbjct: 149 GKTHLMFAAGNVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDD 208 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + Sbjct: 209 IQFFAGKDRTQEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDP 268 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 D+E R +I+ +++ + I +EV +A+ + ++ R+L+GA N LV R +F Sbjct: 269 PDFETRAAIV-----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTG 323 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E + E L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+A Sbjct: 324 RAVTIEFSQETLRDLLR-AQQQTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLA 382 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 M L+K +T S PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 383 MALAKELTEHSLPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 439 >gi|259500777|ref|ZP_05743679.1| DNA-directed DNA replication initiator protein [Lactobacillus iners DSM 13335] gi|302190772|ref|ZP_07267026.1| chromosomal replication initiation protein [Lactobacillus iners AB-1] gi|259167471|gb|EEW51966.1| DNA-directed DNA replication initiator protein [Lactobacillus iners DSM 13335] Length = 453 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 157/479 (32%), Positives = 250/479 (52%), Gaps = 38/479 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKA-WIKNRY 89 ++ E + + +K + Y +WF+ K S N + SV + K W KN Sbjct: 2 LDLEKFWQFFTDNMKKRYSEVAYNAWFKNTKPLSFDKNSKQMTISVESPVSKGYWEKN-- 59 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 ++L QE ++ +EI+ + K A + + T + P+I Sbjct: 60 --LASQLIQEAYAYTD-MEII-------PIFKIAGDTNSERFVVHKTQKKQKPVIENNHN 109 Query: 150 ISPVFGSPL--DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 F L +S++ F TF++G N++A AA ++A+ Y NPLFI VGL Sbjct: 110 ---EFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGL 161 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD Sbjct: 162 GKTHLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDD 221 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + Sbjct: 222 IQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITP 281 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ + E L I++ L +VA V T+ REL+GA LV + A Sbjct: 282 PDLETRIAILRKKA-----EADGLGIDDNTLDYVASQVDTNIRELEGA---LVKVQAHAT 333 Query: 387 I----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I + +A E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PR Sbjct: 334 IEREDINLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPR 393 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AMYLS+ +T S P+IG+ FG +DHTTV+HA K+E+ L+TD +K V LK +++ Sbjct: 394 QIAMYLSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKIERSLKTDSEIKSAVYDLKAMLN 452 >gi|227533506|ref|ZP_03963555.1| DNA-directed DNA replication initiator protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630805|ref|ZP_04673836.1| DNA replication ATPase initiation [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065126|ref|YP_003787149.1| DNA replication ATPase initiation [Lactobacillus casei str. Zhang] gi|227188835|gb|EEI68902.1| DNA-directed DNA replication initiator protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527088|gb|EEQ66089.1| DNA replication ATPase initiation [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437533|gb|ADK17299.1| DNA replication ATPase initiation [Lactobacillus casei str. Zhang] Length = 449 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 146/473 (30%), Positives = 252/473 (53%), Gaps = 36/473 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLET 92 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA W KN + Sbjct: 3 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTKDKLEIEVPASLHKAYWEKNLVTKV 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ E ++++ +++ L T P++ + Q ++ Sbjct: 63 VEGVY--EFAQLEVDPVIMTKDELQPAPATDQRPAVEE---------------DDQNLTF 105 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ F F+ G N++A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 106 KAKTHLNPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTY-----NPLFIYGGVGLGKTHL 160 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N + P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 161 MQAIGNLVLGNNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFG 220 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 221 DKEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLET 280 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+N+ + ED L+I ++ L ++A + ++ R+L+GA LV +F+ + Sbjct: 281 RIAILRNK---ADAED--LSIPDDTLSYIAGQIESNVRDLEGA---LVRVQAFSTMKNED 332 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMY Sbjct: 333 ITTSLAADALKALKLDDRSGQLTIPQILNAVAKYFQLTVQDLKGKKRVKQIVIPRQIAMY 392 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ MT S P+IG+ G +DHTTV+HA K+ + TD LK +V L+ ++ Sbjct: 393 LAREMTDNSLPKIGQEIGGKDHTTVIHAHEKIMASMTTDENLKAQVIELRNIL 445 >gi|81251080|gb|ABB69881.1| DNA replication initiator protein [Nitrosospira sp. NIJS16] Length = 476 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/439 (30%), Positives = 230/439 (52%), Gaps = 24/439 (5%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ L P F+ W+K +L I ++ + R +++ + + ++ + + Sbjct: 43 ILTLVAPNRFVLQWVKENFLGGIEQMGENYFDRPIHLQLKLADQVMTTMGASGLENADMD 102 Query: 131 LSPINTNISKSPIILGKQTISPVFG-----------SPLDSRFVFSTFIEGSSNRVALTA 179 P+ + +L ++ + S L+ F F+TF+ G +N++A Sbjct: 103 SPPVAPAALDASAVLAQKASKDITSNNIKEKREKNPSRLNPSFTFNTFVTGKANQLARAG 162 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A +AE Y NP FI+ VGLGKTHL+QAI N ++ P +V Y+ +E ++ Sbjct: 163 AIQVAECPGVAY-----NPFFIYGGVGLGKTHLIQAIGNLVLEHNPGAKVRYIHSEQYVS 217 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 A + + K ++DLLLIDD+QF GK Q EF + N+L+++ KQV+ Sbjct: 218 DVVRAYQHKAFDDFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITC 277 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 D P E+ ++ R+ SR G++V + + EMR +IL + ++ + ++E V Sbjct: 278 DSYPKEISGMEERLISRFGWGLTVAVEPPELEMRVAILLKKASME-----AIMLDESVAF 332 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA ++V F LT ++A E L L+ + +++ IE+IQ+ Sbjct: 333 FIAKHIRSNVRELEGALKRVVAYSRFTGHALTLDLAREALKDLLAV-QNRQISIENIQKT 391 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA +Y I ++ S +R R V RPRQ+AM +SK +TP S P+IG FG RDHTTVLH R Sbjct: 392 VADYYKIKVAEMYSKKRSRVVARPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYR 451 Query: 478 KVEKMLETDITLKKEVELL 496 K+ ++ +D + ++ L Sbjct: 452 KIAELRASDPAINRDFNTL 470 >gi|255033818|ref|YP_003084439.1| chromosomal replication initiator protein DnaA [Dyadobacter fermentans DSM 18053] gi|254946574|gb|ACT91274.1| chromosomal replication initiator protein DnaA [Dyadobacter fermentans DSM 18053] Length = 480 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 135/439 (30%), Positives = 234/439 (53%), Gaps = 19/439 (4%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV--- 111 + +WF+ ++ + ++ + VP+ F W+++ Y+ + K R +E + Sbjct: 35 FKTWFEPIRPLKLYGKVLTVQVPSQFFYEWLEDNYVNLLRKALDYAIGRDGLLEYSIIVD 94 Query: 112 ----RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTF 167 + L T SP+ +K +T+ + K S + L+ + F F Sbjct: 95 TGNEKHQPLTMNVSTQKSPNYSKPDNFSTDPRMGATVREKDQDSLTLDTYLNPNYSFDNF 154 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 IEG NR+A +A ++A+ G T+ NPL ++ VGLGKTHL+QAI N N Sbjct: 155 IEGDCNRLARSAGFAVAQ--RPGLTS--FNPLMMYGGVGLGKTHLVQAIGNYITNHYENK 210 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 V+Y+++E F +F ++IR+N D +D+L IDD+QFL GK Q F H+ N Sbjct: 211 LVLYVSSEKFTNQFINSIRNNTLQEFTDFYMKVDVLAIDDVQFLSGKEKTQDTFFHIFNH 270 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 L KQ++ +DRPP EL+ L R+ SR + G++ L D+E R +I++ ++ + Sbjct: 271 LHQLGKQIIMTSDRPPRELQGLQDRLLSRFKWGLTADLQAPDFETRIAIIQKKI-----Q 325 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGE 405 ++I+ +V+ ++A +V ++ REL+G L+ + S + E+A L ++V E Sbjct: 326 SEGISIDYDVIEYIAHSVNSNVRELEGVIVSLMAQASLTRRNIDVELAKNTLRNIV-MNE 384 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 K++ I+ IQ ++A ++ +S DL S R + VV PRQ+AMYL+K T IG FG Sbjct: 385 DKEVTIDTIQEIIADYFQVSIADLKSKSRKKEVVYPRQLAMYLAKEYTDLPLKSIGYHFG 444 Query: 466 DRDHTTVLHAVRKVEKMLE 484 RDH+TV+H+++ + +++ Sbjct: 445 GRDHSTVIHSIQSINLLMD 463 >gi|225869488|ref|YP_002745435.1| chromosomal replication initiator protein [Streptococcus equi subsp. equi 4047] gi|254777914|sp|C0M7C0|DNAA_STRE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|225698892|emb|CAW91873.1| chromosomal replication initiator protein [Streptococcus equi subsp. equi 4047] Length = 450 Score = 223 bits (569), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 205/355 (57%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+ ++ F FI+G NR A+ A SIA ++ G T NPLFI GLGKTH Sbjct: 105 PAVQSDLNPKYSFDNFIQGDENRWAVAA--SIAVANTPGTT---YNPLFIWGGPGLGKTH 159 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 160 LLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFRNLDLLLIDDIQSL 219 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 220 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPD 279 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 280 FETRVAILTNKI-----QEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID 334 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +IA E + G + + IE+IQ V K Y ++ ++ + +R + +V RQVA Sbjct: 335 TITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQDIVLARQVA 394 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 395 MFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIGQDESLRIEIETIKNKI 449 >gi|302877246|ref|YP_003845810.1| chromosomal replication initiator protein DnaA [Gallionella capsiferriformans ES-2] gi|302580035|gb|ADL54046.1| chromosomal replication initiator protein DnaA [Gallionella capsiferriformans ES-2] Length = 451 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 143/455 (31%), Positives = 242/455 (53%), Gaps = 23/455 (5%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S + + P + SW + LK + + L+ P++F +++R+ I + + + Sbjct: 12 SSFEKSLPPQQFNSWIKPLKL-TCEDSCFILTAPSSFALKILQDRFFPEINRQAKLTYPV 70 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + E V VE T ++ S+ P I+ S + +T +G L+ Sbjct: 71 VPQFEFRV-------VESTTAN-SMPIAPPPEKKITTSDLKPKIETSFRGYGK-LNQSLT 121 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G +N++A AA +AE+ Y NPLFI+ VGLGKTHL QAI N + Sbjct: 122 FDNFVIGKANQLAFAAATQVAELPGVSY-----NPLFIYGGVGLGKTHLTQAIGNQILIN 176 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +P +V Y+ AE ++ A + N K ++D+LLIDD+QF GK Q EF + Sbjct: 177 RPQAKVCYMHAERYVADVVRAYQTNKFEEFKQYYHSLDVLLIDDIQFFAGKNKTQEEFFY 236 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N+L+DS KQV+ +D P EL L+ R+ SR G+++ + + EMR +IL + AI Sbjct: 237 AFNTLVDSHKQVILTSDTFPKELTGLESRLVSRFGWGLTIAIEPPELEMRVAILLKKAAI 296 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLV 401 S +++ V +A+ V ++ REL+GA ++ F I++ + A E L ++ Sbjct: 297 S-----GYVLDDAVAFFIAKHVNSNVRELEGALKRVEAYTKFHKRIISVDTAKEALKDIL 351 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 +++++ I++IQ+ VA ++ I D+LS +R R + RPRQ+AM L++ +T S PEIG Sbjct: 352 -VAQSRQISIDNIQKTVADYFRIKIIDMLSKKRTRNLTRPRQIAMSLARELTTMSLPEIG 410 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 FG +DH+TV+HA + + + D T+ + ++L Sbjct: 411 NAFGGKDHSTVIHACQTIATLRAGDTTIDADYKIL 445 >gi|21672306|ref|NP_660373.1| chromosomal replication initiator protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|231998|sp|P29434|DNAA_BUCAP RecName: Full=Chromosomal replication initiator protein DnaA gi|2827014|gb|AAC38106.1| DNA biosynthesis initiating protein [Buchnera aphidicola] gi|21622905|gb|AAM67584.1| chromosomal replication initiator protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 454 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 154/474 (32%), Positives = 258/474 (54%), Gaps = 26/474 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 CL C RL++++ ++ W + LK + +NI+ + P F+ W+K++Y Sbjct: 4 CLWKQC-------LDRLQSELPSTEFSMWIRSLK-AKLNNNILEIYAPNQFILDWVKDKY 55 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L K+ Q+ + V S EK + K+ +N I + K++ Sbjct: 56 LIHFKKILQDFCG--SNSPFIKFKVYQTSKEKKFKKNILQKIQNLNAKPIWDKIPIFKKS 113 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S ++ + F FIEG SN++A AA +A+ + Y NPLF++ GLGK Sbjct: 114 SHR---SNINKKHSFENFIEGKSNQLARAAASQVAKNPGNSY-----NPLFLYGGTGLGK 165 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI N + + N++++Y+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 166 THLLHAIGNGILAYKYNVKIIYMHSERFVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQ 225 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 226 FFAHKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPE 285 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL I + ++ + +++EV +A+ + ++ REL+GA N+++ +F Sbjct: 286 LETRVAIL-----IKKADENNIVLSDEVAFFIAKHLRSNVRELEGALNRVIVNANFTHRS 340 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E E L ++ E K + I +IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 341 ITVEFVREALRDILALQE-KLVTIANIQKTVAEYYKIKVADLLSRRRSRSVARPRQMAMA 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++K +T S PEIG F RDHTTVLHA RK+E++ + + +K++ L R +S Sbjct: 400 MAKELTNHSLPEIGDAFSGRDHTTVLHACRKIEQLRKENHDIKEDFSNLIRTLS 453 >gi|163845604|ref|YP_001633648.1| chromosomal replication initiation protein [Chloroflexus aurantiacus J-10-fl] gi|222523303|ref|YP_002567773.1| chromosomal replication initiation protein [Chloroflexus sp. Y-400-fl] gi|189044632|sp|A9WAN1|DNAA_CHLAA RecName: Full=Chromosomal replication initiator protein DnaA gi|254777893|sp|B9LFG0|DNAA_CHLSY RecName: Full=Chromosomal replication initiator protein DnaA gi|163666893|gb|ABY33259.1| chromosomal replication initiator protein DnaA [Chloroflexus aurantiacus J-10-fl] gi|222447182|gb|ACM51448.1| chromosomal replication initiator protein DnaA [Chloroflexus sp. Y-400-fl] Length = 479 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 155/489 (31%), Positives = 247/489 (50%), Gaps = 36/489 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N I+ S L+ Q Y + + S+ + + V + K ++NR L Sbjct: 1 MNLTQIWKATLSALQTQTSRHDYEALLRPATLLSLDNGAAFIGVSSPGQKEGLENRLLMP 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT---------KLSPINTNISKSPI 143 + +R+ G + V+ + +T SPS+T P+ + Sbjct: 61 LRNAL----ARVVGYPVQVQVLIANLNSRTEPSPSLTLSNGSRLMSDPEPVVAETPAPAL 116 Query: 144 ILGKQT---------ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 G T S + L+ R+ FS+FI GSSNR+A A ++A+ Y Sbjct: 117 TPGNGTGERVVQLDLASAMRSGMLNPRYTFSSFIVGSSNRLAHAACLAVADNPGQAY--- 173 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLF++ VGLGKTHLL AI N + R P + V+Y+++E F +AIR + Sbjct: 174 --NPLFLYGGVGLGKTHLLHAIGNRVLDRDPEINVLYVSSEKFTNDLINAIRRQQTEEFR 231 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 RNID+LLIDD+QF+ GK Q EF H N+L +AK +V ++DRPP + +L+ R+R Sbjct: 232 MRYRNIDVLLIDDIQFIAGKDATQEEFFHTFNTLHSAAKHIVISSDRPPKAILTLEERLR 291 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR + G+ V + D E R +IL+ ++ E +++ +EV+ +A + ++ REL+G Sbjct: 292 SRFEWGLIVDVQPPDLETRTAILR-----AKAEQMSVHVPDEVIDFLAHKIQSNIRELEG 346 Query: 374 AFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 + N++ API T E A L+ L+ +++ E I ++V++HY I L + Sbjct: 347 SLNRVAAYAELNRAPI-TIETATAALADLLGNQRRRRISAEAILQIVSEHYGIEVEQLRA 405 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 R R VV PRQVAMYL + T S +IG G RDHTTV++ K+ + + +D L+ Sbjct: 406 RNRSRHVVVPRQVAMYLLREETESSLVDIGNLLGGRDHTTVMYGCEKIAEEINSDSRLRS 465 Query: 492 EVELLKRLI 500 EV ++ I Sbjct: 466 EVMAIRERI 474 >gi|322412915|gb|EFY03822.1| chromosomal replication initiation protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 451 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 206/355 (58%), Gaps = 16/355 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+ ++ F FI+G NR A+ A SIA ++ G T NPLFI GLGKTH Sbjct: 106 PAVTSDLNPKYRFENFIQGDENRWAVAA--SIAVANTPGTT---YNPLFIWGGPGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q L Sbjct: 161 LLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQSL 220 Query: 272 QGKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 K + Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + D Sbjct: 221 AKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL N++ ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 281 FETRVAILTNKI-----QEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQID 335 Query: 388 -LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +IA E + G + + I++IQ V K Y+++ ++ + +R + +V RQVA Sbjct: 336 TITVDIAAEAIRARKQDGPKMTVIPIDEIQTQVGKFYDVTVKEIKATKRTQDIVLARQVA 395 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 396 MFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKI 450 >gi|269836034|ref|YP_003318262.1| chromosomal replication initiator protein DnaA [Sphaerobacter thermophilus DSM 20745] gi|269785297|gb|ACZ37440.1| chromosomal replication initiator protein DnaA [Sphaerobacter thermophilus DSM 20745] Length = 471 Score = 223 bits (568), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 212/354 (59%), Gaps = 15/354 (4%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T +P G L+ R+VF F+ GS+NR+A AA ++A+ + + NPL+I+ VGLG Sbjct: 125 TATPEHG--LNPRYVFEKFVVGSNNRLAHAAALAVADRPAD-----KFNPLYIYGGVGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + ++ R P LR+ Y+++E F +AIR + ++ R ID+L+IDD+ Sbjct: 178 KTHLLHAIGHRALARSPELRIRYVSSETFTNELINAIRQQRTEDFRNRYRTIDILMIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H N+L S KQ+V ++DRPP + +L R+RSR +GG+ + Sbjct: 238 QFIAGKESTQEEFFHTFNALYQSGKQIVISSDRPPKAIPTLADRLRSRFEGGLLADIQPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAP 386 D E R +IL + + + + ++VL +VAR V ++ REL+GA N+++ + Sbjct: 298 DLETRAAILAEK-----GRELGVTVPDDVLEYVARKVESNIRELEGALNKIIALSQLYHR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 ++ E+A E L+ V G +++ ++ + V +Y I+R D+ R R +V PRQVAM Sbjct: 353 PISMELAIEALTDSVGAGR-RQVTVDQVVDTVVNYYQITRRDITGPGRRRDIVLPRQVAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL + T S EIG+ G RDH+TVLH + K+E+ +ETD L+ E+ ++ L+ Sbjct: 412 YLLREETGSSLVEIGQCLGGRDHSTVLHGIEKMERQMETDARLRGEIMAIRELL 465 >gi|309804058|ref|ZP_07698139.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 11V1-d] gi|309804898|ref|ZP_07698960.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 09V1-c] gi|309809771|ref|ZP_07703625.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 2503V10-D] gi|312871204|ref|ZP_07731302.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 3008A-a] gi|312873305|ref|ZP_07733360.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2052A-d] gi|312874899|ref|ZP_07734918.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2053A-b] gi|325912307|ref|ZP_08174704.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 143-D] gi|329919771|ref|ZP_08276722.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 1401G] gi|308163826|gb|EFO66092.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 11V1-d] gi|308165837|gb|EFO68058.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 09V1-c] gi|308169950|gb|EFO71989.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 2503V10-D] gi|311089644|gb|EFQ48069.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2053A-b] gi|311091185|gb|EFQ49574.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2052A-d] gi|311093218|gb|EFQ51564.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 3008A-a] gi|325475966|gb|EGC79135.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 143-D] gi|328937118|gb|EGG33546.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 1401G] Length = 453 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 132/349 (37%), Positives = 204/349 (58%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 117 LNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 171 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 172 HQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEGI 231 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 232 QEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAIL 291 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I++ L +VA V T+ REL+GA LV + A I + + Sbjct: 292 RKKA-----EADGLGIDDNTLDYVASQVDTNIRELEGA---LVKVQAHATIEREDINLNL 343 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ + Sbjct: 344 AKEALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSRKL 403 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG+ FG +DHTTV+HA K+E+ L+TD +K V LK +++ Sbjct: 404 TDSSLPKIGQEFGGKDHTTVMHAYEKIERSLKTDSEIKSAVYDLKAMLN 452 >gi|116493575|ref|YP_805309.1| chromosomal replication initiation protein [Lactobacillus casei ATCC 334] gi|122264962|sp|Q03D55|DNAA_LACC3 RecName: Full=Chromosomal replication initiator protein DnaA gi|116103725|gb|ABJ68867.1| DNA replication ATPase initiation [Lactobacillus casei ATCC 334] Length = 449 Score = 223 bits (568), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 146/473 (30%), Positives = 252/473 (53%), Gaps = 36/473 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLET 92 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA W KN + Sbjct: 3 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTKDKLEIEVPASLHKAYWEKNLVTKV 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ E ++++ +++ L T P++ + Q ++ Sbjct: 63 VEGVY--EFAQLEVDPVIMTKDELQPAPATDQRPAVEE---------------DDQNLTF 105 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ F F+ G N++A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 106 KAKTHLNPKYTFDHFVIGKGNQMAHAAALAVAEAPGTTY-----NPLFIYGGVGLGKTHL 160 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N + P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 161 MQAIGNLVLGNNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFG 220 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 221 DKEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLET 280 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+N+ + ED L+I ++ L ++A + ++ R+L+GA LV +F+ + Sbjct: 281 RIAILRNK---ADAED--LSIPDDTLSYIAGQIESNVRDLEGA---LVRVQAFSTMKNED 332 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMY Sbjct: 333 ITTSLAADALKALKLDDRSGQLTIPQILNAVAKYFQLTVQDLKGKKRVKQIVIPRQIAMY 392 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ MT S P+IG+ G +DHTTV+HA K+ + TD LK +V L+ ++ Sbjct: 393 LAREMTDNSLPKIGQEIGGKDHTTVIHAHEKIMASMTTDENLKAQVIELRNIL 445 >gi|116491819|ref|YP_803554.1| chromosomal replication initiation protein [Pediococcus pentosaceus ATCC 25745] gi|122266717|sp|Q03I60|DNAA_PEDPA RecName: Full=Chromosomal replication initiator protein DnaA gi|116101969|gb|ABJ67112.1| DNA replication ATPase initiation [Pediococcus pentosaceus ATCC 25745] Length = 446 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 130/356 (36%), Positives = 207/356 (58%), Gaps = 18/356 (5%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K+T + + L+SR+ F TF+ GS N++A AA +++ D G V NPLF + VG Sbjct: 99 KETKASTEDTQLNSRYTFDTFVIGSGNQMAHAAAMAVS--DEPG---VLYNPLFFYGGVG 153 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI + ++ P RV Y+T+E F F ++I+ N + RN+DLLL+D Sbjct: 154 LGKTHLMHAIGHQLLENDPKTRVKYVTSEAFTNDFINSIQKNKTEEFHEKYRNVDLLLVD 213 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H +L ++ KQ+V +DR P+E+ L R+ SR + G+S+ + Sbjct: 214 DVQFFADKEATQEEFFHTFEALYNAQKQIVLTSDRLPNEIPKLQERLVSRFKWGLSIDIT 273 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 + E R +IL+ + E P +E L ++A + ++ REL+GA ++ ++A Sbjct: 274 PPNLETRIAILREKAQADNVEIP-----DETLEYIANRIDSNIRELEGAMARI---QAYA 325 Query: 386 PILTAEIADELLSHLV---NTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + A I +L S + N G + I IQ VAK+++++ DL +R++++V P Sbjct: 326 KLQNAAITTDLASDALRSLNFGSNLSHITIPMIQDKVAKYFHVTVADLKGKKRMKSIVIP 385 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 RQ+AMYLS+ +T S P+IG FG +DHTTV+H+ K++ LE D L ++V LK Sbjct: 386 RQIAMYLSRELTESSLPKIGTEFGGKDHTTVIHSFDKIKAELEKDEELARQVGDLK 441 >gi|160872042|ref|ZP_02062174.1| chromosomal replication initiator protein DnaA [Rickettsiella grylli] gi|159120841|gb|EDP46179.1| chromosomal replication initiator protein DnaA [Rickettsiella grylli] Length = 464 Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 151/460 (32%), Positives = 256/460 (55%), Gaps = 28/460 (6%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 RL++ + + +W + L+ +V L P F+ + R+L I ++ + Sbjct: 30 RLQDYISLQDFNTWIRPLQAEQKEDQLV-LWAPNQFVLHCVNERFLVHINQILTQLDE-- 86 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 E+++R + +++SPI N I GK + + ++S F F Sbjct: 87 APPEVILRV--------GSRDNQTSQISPILRNAQG---IKGKSRVVKTSSTHINSNFTF 135 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F+EG SN++A A+ +AE Y NPL ++ VGLGKTHL+ AI NA + + Sbjct: 136 INFVEGKSNQLARAASVQVAENPGEAY-----NPLLLYGGVGLGKTHLMHAIGNAILLKN 190 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P+ +V+YL +E F+ A++ N + K R++D LLIDD+QF GK Q EF H Sbjct: 191 PHAKVLYLHSERFVADMIKALQTNTINDFKTYYRSLDALLIDDIQFFAGKDRSQEEFFHT 250 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+LL+S +Q+V DR P E+ ++ R++SRL G+++ + D E R +IL IS Sbjct: 251 FNTLLESQQQIVLTCDRYPKEMSGVEERLKSRLGWGLTIAIEPPDLETRVAIL-----IS 305 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVN 402 + E K+++ +EV +A+ + ++ REL+G ++V F + +T E+ E + ++ Sbjct: 306 KAEQTKISLPQEVAFFIAKRIHSNVRELEGVLKRVVAYAQFTGLQITLELVREAIKDVLA 365 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + K + +++I + VA++Y I +DLLS RR ++ R RQ+AM L+K +T S PE+GR Sbjct: 366 L-QDKLVTVDNIIKTVAEYYKIKVSDLLSKRRTSSLARARQIAMALAKELTNHSLPELGR 424 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKE-VELLKRLIS 501 FG RDHTTVLHA RK++++ +T+ + ++ + LL+ L S Sbjct: 425 AFGGRDHTTVLHAFRKIQELKKTNTGVAEDFINLLRTLSS 464 >gi|322373978|ref|ZP_08048512.1| replication initiation protein DnaA [Streptococcus sp. C150] gi|321276944|gb|EFX54015.1| replication initiation protein DnaA [Streptococcus sp. C150] Length = 454 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 144/424 (33%), Positives = 232/424 (54%), Gaps = 29/424 (6%) Query: 90 LETITKLFQEEHSR----IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 LE + KLF E++ + + G E+ + + V A L+ ++ N++ + Sbjct: 46 LEEVKKLFWEKNMQSVILLAGFEVYNSKIEIEYVFDEAL------LNQVHQNVTTNDFSS 99 Query: 146 GKQTISP---VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 K SP S L+S++ F FI+G NR ++ A+ ++A DS G T NPLFI+ Sbjct: 100 NKDLQSPALPTLNSDLNSKYTFDNFIQGDENRWSVAASLAVA--DSPGAT---YNPLFIY 154 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL AI N + P R+ Y+TAE F+ F IR + LK R++D+ Sbjct: 155 GGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVVHIRLDKMDELKLKYRHLDV 214 Query: 263 LLIDDMQFLQGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 LLIDD+Q L K Q EF + N L ++ KQ+V +DR P +L ++ R+ +R + G Sbjct: 215 LLIDDIQSLAKKSTQATQEEFFNTFNVLHNNNKQIVLTSDRNPDQLNEMEERLVTRFKWG 274 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-- 377 ++V + D+E R +IL N++ D + E + ++A ++ R+L+GA Sbjct: 275 LTVNITPPDFETRVAILTNKIM-----DYDYHFPSETIEYLAGQFDSNVRDLEGALKDIS 329 Query: 378 LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 LV +T E+A E + + ++ + + IEDIQ V K YN++ ++ + +R + Sbjct: 330 LVANVRQLDTITVEVAAEAIRARKMDGPKLTLIPIEDIQTEVGKFYNVTVKEIKATKRTQ 389 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V RQVAMYL++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E++ + Sbjct: 390 NIVLARQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDDSLRIEIDTI 449 Query: 497 KRLI 500 K I Sbjct: 450 KNKI 453 >gi|327398174|ref|YP_004339043.1| Chromosomal replication initiator protein dnaA [Hippea maritima DSM 10411] gi|327180803|gb|AEA32984.1| Chromosomal replication initiator protein dnaA [Hippea maritima DSM 10411] Length = 417 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 114/334 (34%), Positives = 204/334 (61%), Gaps = 13/334 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F F+ G SN++A A+ +++E + Y NPLFI+ VGLGKTHLL AI Sbjct: 81 LNSKYGFENFVVGPSNQLAYAASVAVSENPAKAY-----NPLFIYGGVGLGKTHLLHAIG 135 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N+ K PN RV+Y+++E F ++I+ ++ RN+D LLIDD+QF+ K Sbjct: 136 NSIKKNNPNARVLYISSEEFTNELINSIQYKKMTQFRNKYRNLDCLLIDDIQFISKKERT 195 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 + EF H N+L +S KQ++ +D+PP+E+ ++ R++SR G+ V + + E R +I+ Sbjct: 196 EEEFFHTFNALYESQKQIIITSDKPPNEIPDIENRLKSRFSWGLIVDIQPPELETRIAII 255 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 + + + L I++E++ +A +++++ RE++GA ++ ++ +T + Sbjct: 256 RKKAELFN-----LEISQEIIEFIASSISSNVREIEGALIKISAYKSIMRKPVTLNLVKS 310 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L ++ E K + E+IQ+ VAKH+NIS + L S+ R + ++ PR++AMYL++ +T Sbjct: 311 ILQDIIIRKE-KMLTAENIQKTVAKHFNISVDSLKSSTRKKEILIPREIAMYLTRKITKN 369 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 S PEI +FG + H T+++A +++E +E DI L Sbjct: 370 SLPEIKAKFGVKSHATIINACKRIESEMEKDINL 403 >gi|331092112|ref|ZP_08340943.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 2_1_46FAA] gi|330402313|gb|EGG81884.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 2_1_46FAA] Length = 456 Score = 223 bits (567), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 121/352 (34%), Positives = 209/352 (59%), Gaps = 18/352 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G++N+ A A+ ++AE Y NPLF++ VGLGKTHL+ +IA Sbjct: 107 LNHKYTFDTFVVGNNNQFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSIA 161 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIR------DNCALNLKDSLRNIDLLLIDDMQFL 271 + ++ P +V+Y+T+E F AI+ ++ + ++ RNID+LLIDD+QF+ Sbjct: 162 HFILEEDPTKKVLYVTSETFTNELIEAIKSGRTGNESTMTSFREKYRNIDVLLIDDVQFI 221 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N L S KQ++ ++D+PP + E+L+ R+R+R + G+ + DYE Sbjct: 222 IGKESTQEEFFHTFNHLHVSGKQIILSSDKPPKDFETLEARLRTRFEWGLIADISSPDYE 281 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 R +IL+ ++ + + +I ++V+ ++A V ++ REL+G+ N+L+ + + Sbjct: 282 TRMAILQKKIELDNLD--VYHIPDDVVEYIANNVKSNIRELEGSLNKLIALYKLNYNSSK 339 Query: 391 EI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 EI A E L +++ E + + I+ I +VA+H+N+S DL S +R +V PRQ+AM Sbjct: 340 EIDIPLAAEALKDIISPNENRTITIDLIIDVVAEHFNVSVADLKSGKRNSEIVMPRQIAM 399 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 YL + M IG G RDH+T+ H V K++ L+T+ TL ++++K+ Sbjct: 400 YLCRTMIDTPLKSIGIILGGRDHSTINHGVDKIKAELKTNDTLNNTIDIIKK 451 >gi|194332854|ref|YP_002014714.1| chromosomal replication initiation protein [Prosthecochloris aestuarii DSM 271] gi|194310672|gb|ACF45067.1| chromosomal replication initiator protein DnaA [Prosthecochloris aestuarii DSM 271] Length = 492 Score = 222 bits (566), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 149/488 (30%), Positives = 249/488 (51%), Gaps = 48/488 (9%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 CLE I+ ++ NQ + +WF + + N + + VP+ F WI+ Y Sbjct: 31 CLE--------IIKEKINNQA----FKTWFTPITPLNFSDNELTIEVPSQFFYEWIEENY 78 Query: 90 LETITKLFQEEHSRIQGVE-ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + + +E I G E L+ S+ + +K+ P +L + NI+KS Sbjct: 79 SRYVKEALKE----IIGAEGKLMYSIVM---DKSQGHPVTIELP--HQNIAKSAEPPAST 129 Query: 149 TISPV--------------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 SP F S L+ ++ FS+ I G N +A A++S+A+ Sbjct: 130 IPSPPQSADRERFEKNRIKFESHLNPKYTFSSLIRGDCNSLAFAASKSVAQNPGQN---- 185 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPL I+ VGLGKTH++QAI N + + V+Y+++E F F +AI++ Sbjct: 186 AFNPLVIYGGVGLGKTHMMQAIGNQVRENCISEYVLYVSSEKFAIDFVNAIQNGNIQEFS 245 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R ID+L+IDD+QF GK Q E H+ N+L S KQ++ ++DRP E++ ++ R+ Sbjct: 246 SFYRKIDVLIIDDIQFFAGKEKTQEEIFHIFNTLHQSNKQIILSSDRPIKEIKGIEDRLI 305 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G+SV L DYE R +I++++L E +N++ ++ +A VT + REL+G Sbjct: 306 SRFNWGLSVDLQPPDYETRKAIIQSKL-----EQNGVNLDSTIVDFIATNVTQNVRELEG 360 Query: 374 AFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 +L+ HS F + L ++ ++K++ +E I++ V +++I+ NDL Sbjct: 361 CIVKLLAAHSLFNQEIDLAFTKSTLKDIIRI-QSKQLTLETIEKAVCSYFSITPNDLKGK 419 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 + + + RQ+AMYLSK +T S IG FG RDH+TV+H V K +E + ++ Sbjct: 420 SKKKEIATGRQIAMYLSKELTDSSLKTIGLHFGGRDHSTVIHGCNTVSKKMEQSMEIRNT 479 Query: 493 VELLKRLI 500 +E LK+ I Sbjct: 480 IEELKKRI 487 >gi|260063127|ref|YP_003196207.1| chromosomal replication initiation protein [Robiginitalea biformata HTCC2501] gi|88784696|gb|EAR15866.1| chromosomal replication initiation protein [Robiginitalea biformata HTCC2501] Length = 474 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/490 (30%), Positives = 259/490 (52%), Gaps = 35/490 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V S++ + +++ + P + +WF +K + + + VP+ F W++ Y+ Sbjct: 1 MNVTANSVWKNCLAFIEDNIQPQAFKTWFVPIKPVKLSEKALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVAL--------PSVEKTASSPSITKLSPINTNI---S 139 + + E +G + LV + + P EK S+ + +++P ++ S Sbjct: 61 KLLKVALTRELG--EGAK-LVYVIKMENTYGNREPFTEKIPSA-NRGQMTPQEMDVPIKS 116 Query: 140 KSP------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 K+P +I G + I S L+ + F F+EG SNR+A +A ++A + G T+ Sbjct: 117 KNPELKNPFVIPGIRNIK--IESQLNPSYNFENFLEGDSNRLARSAGMAVA--NKPGGTS 172 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPL + VGLGKTHL AI + P V+Y++AE F ++ ++R N + Sbjct: 173 --FNPLLVFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVRKNTRNDF 230 Query: 254 KDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ Sbjct: 231 IHFYQLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRL 290 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 SR + G+S L DYE R ILKN+L E P EE++ +VA+ + ++ REL+ Sbjct: 291 LSRFKWGLSAELQSPDYETRVCILKNKLYRDGVEMP-----EEIIDYVAKHIKSNIRELE 345 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA L+ + SF +T ++A +++ V + +++ IE IQ++V+ ++ + L S Sbjct: 346 GAIISLIAQSSFNKKEVTLDLAQQVVEKFVKNTK-REVSIEYIQKVVSDYFEMDVATLQS 404 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 R R +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + ETD +K Sbjct: 405 KTRKRHIVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLAETDKQFRK 464 Query: 492 EVELLKRLIS 501 +E L + S Sbjct: 465 YIEDLTKKFS 474 >gi|260654348|ref|ZP_05859838.1| DNA replication initiator protein, ATPase [Jonquetella anthropi E3_33 E1] gi|260630981|gb|EEX49175.1| DNA replication initiator protein, ATPase [Jonquetella anthropi E3_33 E1] Length = 443 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 143/444 (32%), Positives = 239/444 (53%), Gaps = 32/444 (7%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W + S + + + + F++ I+NRYL+T+ +L SR L +S+ L Sbjct: 28 TWLKSCVPLSYVDDTLTVDAANVFIENTIRNRYLKTLEELM----SRAG----LGQSICL 79 Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 +V + S S P K+P G L+ + FS+F+ G SNR+A Sbjct: 80 -TVPQEKDSSSGKPEQPQRVAEPKNPSPTG-----------LNPNYKFSSFVVGRSNRLA 127 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A+ ++A+ Y+ PLFI VGLGKTHL+ AI + ++ + P LRV Y+++E Sbjct: 128 HAASLAVADNPGSAYS-----PLFIWGGVGLGKTHLMHAIGHHALAQNPRLRVTYVSSEK 182 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F +AI++N + R++DLLLIDD+QF+ GK Q EF H N+L D+ KQ+V Sbjct: 183 FTNELITAIKNNKTAEFRSKYRHMDLLLIDDIQFIAGKESTQEEFFHTFNTLHDNKKQIV 242 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 ++DRPP E+ ++ R+ SR + G+ + DYE R +ILK + E + +E Sbjct: 243 LSSDRPPKEISDIEERLVSRFEWGLVTDIQQPDYETRIAILKKK-----AESRNYPLPDE 297 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDI 414 V ++A+ + ++ REL+G+ N+++ + +T E A E L ++ + + IE I Sbjct: 298 VAAYLAQNIPSNIRELEGSLNRVIACAELSSEQITVERAVEWLKDMIGSKRRGVITIETI 357 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 Q++VA+ + DL+S +R + RQ+AM+L + T S +I F +DHTTVLH Sbjct: 358 QQIVAEECGFTVEDLVSRKRTNDIALSRQIAMFLCRTHTECSLQQISTAFRKKDHTTVLH 417 Query: 475 AVRKVEKMLETDITLKKEVELLKR 498 A RK+ +L ++ +K VE +++ Sbjct: 418 AHRKISSLLMENLRVKALVENIEK 441 >gi|81251084|gb|ABB69884.1| DNA replication initiator protein [Nitrosospira sp. NIJS18] Length = 476 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 133/439 (30%), Positives = 230/439 (52%), Gaps = 24/439 (5%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ L P F+ W+K +L + ++ + R +++ + + ++ + + Sbjct: 43 ILTLVAPNRFVLQWVKENFLGGMEQMGENYFDRPIHLQLKLADQVMTTMGASGLENADMD 102 Query: 131 LSPINTNISKSPIILGKQTISPVFG-----------SPLDSRFVFSTFIEGSSNRVALTA 179 P+ + +L ++ + S L+ F F+TF+ G +N++A Sbjct: 103 SPPVAPAALDASAVLAQKASKDITSNNIKEKREKNPSRLNPSFTFNTFVTGKANQLARAG 162 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A +AE Y NP FI+ VGLGKTHL+QAI N ++ P +V Y+ +E ++ Sbjct: 163 AIQVAECPGVAY-----NPFFIYGGVGLGKTHLIQAIGNLVLEHNPGAKVRYIHSEQYVS 217 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 A + + K ++DLLLIDD+QF GK Q EF + N+L+++ KQV+ Sbjct: 218 DVVRAYQHKAFDDFKRYYHSLDLLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITC 277 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 D P E+ ++ R+ SR G++V + + EMR +IL + ++ + ++E V Sbjct: 278 DSYPKEISGMEERLISRFGWGLTVAVEPPELEMRVAILLKKASME-----AIMLDESVAF 332 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA ++V F LT ++A E L L+ + +++ IE+IQ+ Sbjct: 333 FIAKHIRSNVRELEGALKRVVAYSRFTGHALTLDLAREALKDLLAV-QNRQISIENIQKT 391 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA +Y I ++ S +R R V RPRQ+AM +SK +TP S P+IG FG RDHTTVLH R Sbjct: 392 VADYYKIKVAEMYSKKRSRVVARPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYR 451 Query: 478 KVEKMLETDITLKKEVELL 496 K+ ++ +D + ++ L Sbjct: 452 KIAELRASDPAINRDFNTL 470 >gi|217968466|ref|YP_002353700.1| chromosomal replication initiation protein [Thauera sp. MZ1T] gi|217505793|gb|ACK52804.1| chromosomal replication initiator protein DnaA [Thauera sp. MZ1T] Length = 500 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 146/511 (28%), Positives = 247/511 (48%), Gaps = 59/511 (11%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + +T SRL+ ++ + +W + L+ L P F+ W++ RYL + Sbjct: 2 TQDFWTFCLSRLEQELPQQQFNTWIKTLRAEPGEGGWA-LIAPNRFVLQWVRERYLRRVE 60 Query: 95 KLFQEEHSRIQGVEI-----------------------------LVRSVALPSVEKTASS 125 +L +E +E+ + + +VE ++ Sbjct: 61 ELGEEFAGAPLAIELQLPPAGAARPARAAATADVAPARASAPRSTIEATPAQAVETAETA 120 Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSP--------------LDSRFVFSTFIEGS 171 P++ L ++ P + ++ +P S L+ F F T + G Sbjct: 121 PAV--LDTVDAAEPAEPPVRPRRAAAPRSHSSEPSSGLDLAYEKTRLNPDFTFDTLVTGR 178 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 +N +A AA +A+ Y NPLF++ VGLGKTHL+ AI NA + P + Y Sbjct: 179 ANDLARAAAMQVAQNPGTSY-----NPLFVYGGVGLGKTHLVHAIGNAVFRHNPRAVIRY 233 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + E + A + K R++D+L+IDD+QF K Q EF H N+L ++ Sbjct: 234 VHVEDYYADVVRAYQQKSFDAFKRYYRSLDMLIIDDIQFFNNKNRTQEEFFHAFNALTEA 293 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ+V D P +++ L+ R+ SR G++V + + EMR +ILK + E ++ Sbjct: 294 RKQIVITCDTYPKDIQGLEDRLISRFDWGLTVQIEPPELEMRVAILKKK-----AEALRV 348 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKM 409 ++++V +A+ + ++ REL+GA N++V F + E+A E L L++ +++ Sbjct: 349 LVDDDVAFLIAKNLRSNVRELEGALNKVVAYARFHGRQIGLEVAKEALKDLLH-AHNRQL 407 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 IE IQ+ VA +Y I D+ S +R R + RPRQVAM+L+K +TP S P IG FG RDH Sbjct: 408 SIEHIQKTVADYYKIKIADMHSKKRTRVIARPRQVAMWLAKELTPMSLPAIGEAFGGRDH 467 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TTVLHA R + ++ D L +V +L +++ Sbjct: 468 TTVLHACRTITELRLGDAQLNHDVHVLTQVL 498 >gi|158336233|ref|YP_001517407.1| chromosomal replication initiation protein [Acaryochloris marina MBIC11017] gi|189044628|sp|B0CDM2|DNAA_ACAM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|158306474|gb|ABW28091.1| chromosomal replication initiator protein DnaA [Acaryochloris marina MBIC11017] Length = 455 Score = 222 bits (566), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 149/475 (31%), Positives = 247/475 (52%), Gaps = 39/475 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + E++++ V RL+ Q+ + +W + + N + + P F + W++ Y+ Sbjct: 1 METSLETLWSQVLERLQLQLSRPTFETWIKTANAEQLDENRLVIRTPNPFARNWLQKYYV 60 Query: 91 ETITKLFQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPI-----NTNISKSPI 143 +TI + E I G VEI + +A T S+P + P NTN S+ Sbjct: 61 KTIRDVVHE----ILGHPVEIQIE-IAQGDSNATISAPEVASPPPTASPVENTNTSQ--- 112 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 +Q S L+ ++VFS ++ G +NR+A A ++AE + NPLF+ Sbjct: 113 ---RQQAS------LNPKYVFSRYVVGPNNRMAHAACLAVAESPGREF-----NPLFLCG 158 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+QAI + ++ PN R+ Y++ E F +AIR + ++ R +D++ Sbjct: 159 GVGLGKTHLMQAIGHYRLEISPNSRIFYISTEQFTNDLIAAIRKDGMQKFREHYRAVDVM 218 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+QF++GK Q EF H N+L ++ KQVV A+DRPPS++ L R+ SR G+ Sbjct: 219 LVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIA 278 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D E R +IL+ + E + + EV+ ++A + T++ REL+GA + V Sbjct: 279 DIQPPDLETRMAILQKK-----AEYENIRLPREVIEYIASSYTSNIRELEGALIRAV--- 330 Query: 383 SFAPILTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 ++ I + E ++ ++N K E I VA Y IS +DL N R R + Sbjct: 331 AYISISGLPMNVENIAPVLNPPTAKISASPESIINAVADTYGISIDDLKGNSRRREISMA 390 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 RQ+ MYL + T S P+IG FG +DHTTV+++ KV + + + L + + L Sbjct: 391 RQIGMYLMRQHTDLSLPKIGEEFGGKDHTTVMYSCDKVSDLQKKNPELAQSLRQL 445 >gi|81251100|gb|ABB69896.1| DNA replication initiator protein [Nitrosomonas sp. IWT310] Length = 459 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 244/467 (52%), Gaps = 24/467 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQ--RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E+ + K ++ + +W + +LK + N + L P F+ WIK+ ++ I Sbjct: 5 ETFWYFCLKHFKQELNGQQFNTWIKPLKLKICPDVENTLVLIAPNRFVLQWIKDNFVNRI 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS-P 152 ++ Q + ++ ++ P+ +TA+ I P N K P T + Sbjct: 65 DEMAQGHFNEKIHFKLELKD---PAEIETAT---IKAPEPKNKEDKKPPTDKAHGTTARK 118 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F F F+ G +N++A A +AE Y NPLFI+ VGLGKTHL Sbjct: 119 TNPSRLNPAFTFDAFVTGKANQLARAGAIQVAERPGIAY-----NPLFIYGGVGLGKTHL 173 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ N ++ ++ Y+ AE ++ SA + K ++DLLL+DD+QF Sbjct: 174 MHAVGNYVMELDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQFFS 233 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF + N+L+++ KQV+ +D P E+ L+ R+ SR G++V + + EM Sbjct: 234 GKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPELEM 293 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL + I K+ ++E +A+ + ++ REL+GA +++ F PI + Sbjct: 294 RVAILLKKAFIE-----KIELDESTAFFIAKYIRSNVRELEGALKRVLAYSRFTGHPI-S 347 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L L+ + +++ IE+IQ+ VA +Y I D+ S +RVR + RPRQVAM ++ Sbjct: 348 LDLAKEALKDLLAI-QNRQISIENIQKTVADYYKIKVADMYSKKRVRAIARPRQVAMAIA 406 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 K +T S P+IG FG RDHTTVLHA RK+ ++ +D + ++ L Sbjct: 407 KELTQLSLPDIGEAFGGRDHTTVLHAHRKIVELRASDPGINRDYSTL 453 >gi|222109226|ref|YP_002551490.1| chromosomal replication initiation protein [Acidovorax ebreus TPSY] gi|221728670|gb|ACM31490.1| chromosomal replication initiator protein DnaA [Acidovorax ebreus TPSY] Length = 473 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/431 (32%), Positives = 231/431 (53%), Gaps = 17/431 (3%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 V L V F WI+ +Y I+ L + + Q V + + SV +T P+ + Sbjct: 56 VTLLVANRFKLDWIRAQYAGRISALLEGLYG--QPVTLELALAQRESVVRTYVRPTAPET 113 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 S P + + F + L+ F T +EG++NR+A +AA +A H Y Sbjct: 114 PATGDAPSAHPT--ADEAPAGAFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLY 171 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLFI+ VGLGKTHL+ A+ N ++ +P+ +V+Y+ AE F+ + + Sbjct: 172 -----NPLFIYGGVGLGKTHLVHAVGNKLLQDRPDAKVLYIHAEQFVSDVVKSYQRRTFD 226 Query: 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + K+ ++DLLLIDD+QF K Q EF + +LL +V +D P L ++ Sbjct: 227 DFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHE 286 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+ SR G++V + + EMR +IL N+ E P EEV VA+ V ++ RE Sbjct: 287 RLVSRFDSGLTVAIEPPELEMRVAILINKARAEGSEMP-----EEVAFFVAKNVRSNVRE 341 Query: 371 LDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 L+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y I D+ Sbjct: 342 LEGALRKILAYSRFNQKEVSIQLAREALRDLLSI-QNRQISVENIQKTVADYYKIKVADM 400 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + L Sbjct: 401 YSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIGAERQQLTEL 460 Query: 490 KKEVELLKRLI 500 +++ +L++ + Sbjct: 461 NQQLHVLEQTL 471 >gi|206889361|ref|YP_002247869.1| chromosomal replication initiator protein DnaA [Thermodesulfovibrio yellowstonii DSM 11347] gi|259645263|sp|B5YGT9|DNAA_THEYD RecName: Full=Chromosomal replication initiator protein DnaA gi|206741299|gb|ACI20356.1| chromosomal replication initiator protein DnaA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 438 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 136/457 (29%), Positives = 235/457 (51%), Gaps = 39/457 (8%) Query: 49 QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE 108 +VG + WF +K + ++ + VP F K WI++ + I+ F + I G + Sbjct: 18 KVGESTFELWFSPIKLLDIKNSEAFIEVPNRFFKDWIEDNFPSIISDSFYQ----ITGSQ 73 Query: 109 ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 + V+ + +T I + ++ K ++P ++ F TF+ Sbjct: 74 VEVKYIITGKEHETGL-------------IEEKKQVIKKGNLNP--------KYTFDTFV 112 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G SN+ A A+ +AE Y NPLFI+ VGLGKTHL+ AI N + ++P + Sbjct: 113 VGPSNQFAHAASFRVAENPGFAY-----NPLFIYGGVGLGKTHLITAIGNYILDKKPEMN 167 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 V Y+++E F F SAIR ++ R +D+ L+DD+QF+ GK Q EF H N L Sbjct: 168 VCYISSEQFTGEFVSAIRHEKMPEFRNKYRTVDVFLVDDIQFIAGKDSTQEEFFHTFNEL 227 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 KQ+V ++DRPP E+ + R+RSR G+ + + E R +IL + + + Sbjct: 228 YSKQKQIVISSDRPPMEISDITDRLRSRFGMGLIADIQPPEIETRLAILYKKADMEGVKL 287 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGET 406 P E+V +A V ++ REL+G+ +L S + ++ ++A +L L+ E Sbjct: 288 P-----EDVAYFIASRVKSNVRELEGSLIKLCAYTSLTKVPISMDVAKYVLRDLL-PDEN 341 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + IE IQ+ V + + D+ S +R + + R++AMY++K +T S EIG FG Sbjct: 342 KPITIELIQKAVCEAVGLKIQDIKSKKRTKEISNARKLAMYITKKLTNLSLAEIGNAFGG 401 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRLISE 502 +DH TV++A ++VEK E D ++ + ++ ++K++ + Sbjct: 402 KDHATVIYACKQVEKEKEKDESISRLIDSIIKKVTGQ 438 >gi|186680551|ref|YP_001863747.1| chromosomal replication initiation protein [Nostoc punctiforme PCC 73102] gi|226735830|sp|B2J2B2|DNAA_NOSP7 RecName: Full=Chromosomal replication initiator protein DnaA gi|186463003|gb|ACC78804.1| chromosomal replication initiator protein DnaA [Nostoc punctiforme PCC 73102] Length = 459 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 145/473 (30%), Positives = 251/473 (53%), Gaps = 24/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ ES+++ V RL+ ++ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MEIPIESLWSQVLERLQVELSRPTFETWIKTASAERLENNCLVIRTPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI Q+ G+ I V + S S ++S +TN S P L Sbjct: 61 NTIAHAVQDILGHPVGIYITV------AQGDEVSHFSEREVSWESTNPSSIPESLPHHNH 114 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+S++VFS F+ G++NR+A A+ ++AE + NPLF+ VGLGKT Sbjct: 115 K---TTELNSKYVFSRFVVGANNRMAHAASLAVAESPGKEF-----NPLFLCGGVGLGKT 166 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + K P+ ++ Y++ E F +AIR + + ++ R D+LL+DD+QF Sbjct: 167 HLMQAIGHYRWKICPDCKIFYVSTEQFTNDLITAIRKDSMQSFREHYRAADVLLVDDIQF 226 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+GK Q EF + N+L ++ KQVV A+DRPP+++ SL R+ SR G+ + D Sbjct: 227 LEGKEYTQEEFFYTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQKPDL 286 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + ED + + +V+ ++A T++ REL+GA + V ++ I Sbjct: 287 ETRMAILQKK-----AEDENIRLPRDVIEYIASNYTSNIRELEGALIRAV---AYISIWG 338 Query: 390 AEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++ E E I ++VA ++++S +DL N R R + RQ+ MYL Sbjct: 339 LPMTVENITPVLEPPNEKMAASPEAILKVVADNFDVSIDDLKGNSRRREISWARQIGMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV+++ K+ ++ + D TL + + L I+ Sbjct: 399 MRQHTSLSLPRIGEEFGGKDHTTVIYSCDKITQLHQGDRTLAQTLRQLSDRIN 451 >gi|319951594|ref|YP_004162861.1| chromosomal replication initiator protein dnaa [Cellulophaga algicola DSM 14237] gi|319420254|gb|ADV47363.1| chromosomal replication initiator protein DnaA [Cellulophaga algicola DSM 14237] Length = 474 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 151/486 (31%), Positives = 257/486 (52%), Gaps = 27/486 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V S++ +K+ + P + +WF+ +K + + + VP+ F W++ Y+ Sbjct: 1 MSVTAISVWNNCLDFIKDNIQPQAFKTWFEPIKPVKLTDKALSIQVPSKFFYEWLEEHYV 60 Query: 91 E----TITKLFQEEHSRIQGVEIL-VRSVALPSVEKTASSP-SITKLSPINTNI-SKSP- 142 + ++TK E + +++ P EK SS S ++ I SK+P Sbjct: 61 KLLKVSLTKELGESAKLVYIIKMENTYGNREPFTEKIPSSNRSTVPAQELDVAIKSKNPQ 120 Query: 143 -----IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 II G + I S L+ + F F+EG SNR+A +A ++A + G T+ N Sbjct: 121 LKNPFIIPGIRNIK--IESQLNPNYNFENFLEGDSNRLARSAGMAVA--NKPGGTS--FN 174 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PL I VGLGKTHL AI + P V+Y++AE F ++ +++ N + Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHFY 234 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR Sbjct: 235 QLIDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+S L DYE R SILKN+L E P ++++ +VA+ + T+ REL+GA Sbjct: 295 KWGLSAELQNPDYETRISILKNKLYRDGVEMP-----DDIIDYVAKHIKTNIRELEGAII 349 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 L+ + SF +T ++A +++ V + +++ I+ IQ++V+ ++ + L S R Sbjct: 350 SLIAQSSFNKKEVTLDLAQQVVEKFVKNTK-REVSIDYIQKVVSDYFEMDVATLQSKTRK 408 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + ETD +K ++ Sbjct: 409 RHIVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLAETDKQFRKYIDD 468 Query: 496 LKRLIS 501 L + S Sbjct: 469 LTKKFS 474 >gi|121596425|ref|YP_988321.1| chromosomal replication initiation protein [Acidovorax sp. JS42] gi|120608505|gb|ABM44245.1| chromosomal replication initiator protein DnaA [Acidovorax sp. JS42] Length = 473 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 144/434 (33%), Positives = 233/434 (53%), Gaps = 23/434 (5%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV---RSVALPSVEKTASSPSI 128 V L V F WI+ +Y I+ L + + + +E+ + SV V TA Sbjct: 56 VTLLVANRFKLDWIRAQYAGRISALLEGLYGQPVTLELALAQRESVVRTYVRPTAPDTPA 115 Query: 129 TKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 T +P S P + + F + L+ F T +EG++NR+A +AA +A Sbjct: 116 TGDAP-----SAHPT--ADEAPAGAFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPG 168 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 H Y NPLFI+ VGLGKTHL+ A+ N ++ +P+ +V+Y+ AE F+ + + Sbjct: 169 HLY-----NPLFIYGGVGLGKTHLVHAVGNKLLQDRPDAKVLYIHAEQFVSDVVKSYQRR 223 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + K+ ++DLLLIDD+QF K Q EF + +LL +V +D P L + Sbjct: 224 TFDDFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLAN 283 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 + R+ SR G++V + + EMR +IL N+ E P EEV VA+ V ++ Sbjct: 284 IHERLVSRFDSGLTVAIEPPELEMRVAILINKARAEGSEMP-----EEVAFFVAKNVRSN 338 Query: 368 GRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y I Sbjct: 339 VRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSI-QNRQISVENIQKTVADYYKIKV 397 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 398 ADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIGAERQQL 457 Query: 487 ITLKKEVELLKRLI 500 L +++ +L++ + Sbjct: 458 TELNQQLHVLEQTL 471 >gi|210614348|ref|ZP_03290167.1| hypothetical protein CLONEX_02381 [Clostridium nexile DSM 1787] gi|210150692|gb|EEA81701.1| hypothetical protein CLONEX_02381 [Clostridium nexile DSM 1787] Length = 461 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 139/459 (30%), Positives = 245/459 (53%), Gaps = 37/459 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + L+ ++V + V++ VP +I +YL FQ + I G E V+ + Sbjct: 26 FRTWIEPLEVYNVSDSTVYILVPLKSSVDYINQKYLLP----FQVCIAEITGQEFEVKFI 81 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQ-TISPVF-GSPLDSRFVFSTFIEGSS 172 + + N N+ K T + +F + L+ ++ F TF+ G + Sbjct: 82 TVDDSQ--------------NINVKNQDDTYKKNATQNSIFEQANLNPKYTFDTFVVGGN 127 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N A A+ +++E Y NPLF++ VGLGKTHL+ +IA+ +++ P +V+Y+ Sbjct: 128 NNFAHAASLAVSESPGEIY-----NPLFLYGGVGLGKTHLMHSIAHFILEKDPTKKVLYV 182 Query: 233 TAEYFMWRFASAIRDN--------CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 T+E F A++ ++ RNID+LLIDD+QF+ GK Q EF H Sbjct: 183 TSETFTNELIEALKSGKTSGGNELAMTAFREKYRNIDVLLIDDVQFIIGKESTQEEFFHT 242 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + DYE R +IL+ + + Sbjct: 243 FNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPDYETRMAILRKKEELD 302 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVN 402 + K +I+ EV+ ++A V ++ REL+G+ N+L+ H + +A E L +V+ Sbjct: 303 GLQ--KYHISNEVMQYIATNVKSNIRELEGSLNKLIALHKLKNEEINIMLAAEALKDIVS 360 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + +++ E I +V++H+++S DL S +R + RQ+AMYL + MT IG Sbjct: 361 PNKNRQITPELILEVVSEHFSVSIADLKSGKRNANIANSRQIAMYLCRTMTDTPLKSIGI 420 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDH+TV H V KV + ++T+ L +E++K+ I+ Sbjct: 421 MLGGRDHSTVSHGVDKVTEDIKTNEALNNTIEIIKKKIN 459 >gi|300362678|ref|ZP_07058854.1| DNA-directed DNA replication initiator protein [Lactobacillus gasseri JV-V03] gi|300353669|gb|EFJ69541.1| DNA-directed DNA replication initiator protein [Lactobacillus gasseri JV-V03] Length = 464 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 204/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 128 LNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 182 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + + + +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF K I Sbjct: 183 HQMLAEKLHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFFSKKEGI 242 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 243 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAIL 302 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I++ L ++A V T+ REL+GA LV + A I + ++ Sbjct: 303 RKK-----AETDGLAIDDSTLDYIASQVDTNIRELEGA---LVKVQAHATIEREDINVDL 354 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ + Sbjct: 355 AKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSREL 414 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 415 TDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 462 >gi|149375636|ref|ZP_01893405.1| chromosomal replication initiation protein [Marinobacter algicola DG893] gi|149360038|gb|EDM48493.1| chromosomal replication initiation protein [Marinobacter algicola DG893] Length = 445 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 155/459 (33%), Positives = 242/459 (52%), Gaps = 47/459 (10%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHS----RI--------QGVEILVRS---VALPS 118 L P F+ W+ +YL I ++ ++ H RI + +++VRS V+ + Sbjct: 2 LFAPNRFVMDWVNEKYLRRIEEVLKDLHGGQAPRIDMKVGSAPRSSDLVVRSENAVSGVA 61 Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTIS----PVFG-----SPLDSRFVFSTFIE 169 E+ + +T+ +P + K + V G S L+ F F TF+E Sbjct: 62 AEQEEAGSRVTEEEKGVAATVTTPSVKAKSSSERRSVQVEGDIKHQSFLNEGFTFDTFVE 121 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G SN++A A+ +AE Y NPLF++ VGLGKTHL+ AI N ++R P +V Sbjct: 122 GKSNQLARAASMQVAENPGGAY-----NPLFLYGGVGLGKTHLMHAIGNDIVRRNPRAKV 176 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 YL +E F+ A++ N K R++D LLIDD+QF K Q EF H N+LL Sbjct: 177 AYLRSERFVADMVKALQLNAINEFKRYYRSVDALLIDDIQFFARKERSQEEFFHTFNALL 236 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + +QV+ DR P E+ ++ R++SR G++V + + E R +IL + + E Sbjct: 237 EGGQQVIVTCDRFPKEIVDMEERLKSRFGWGLTVMVEPPELETRVAIL-----MKKAEQV 291 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA------PILTAEIADELLSHLVN 402 + ++ E +A+ + ++ REL+GA ++ F P + + D L H Sbjct: 292 NVKLSSEAAFFIAQKIRSNVRELEGALRLVIANAHFTGSEITPPFIRESLKDLLALH--- 348 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 K++ I++IQR VA++Y I DLLS RR RTV RPRQVAM L+K +T S PEIG Sbjct: 349 ---EKQVSIDNIQRTVAEYYKIKVADLLSKRRTRTVTRPRQVAMSLAKELTNHSLPEIGD 405 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTVLHA +K+ ++ ETD ++++ + RL++ Sbjct: 406 AFGGRDHTTVLHACKKIVELQETDPGIREDYQNFMRLLT 444 >gi|291548768|emb|CBL25030.1| chromosomal replication initiator protein DnaA [Ruminococcus torques L2-14] Length = 456 Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 242/457 (52%), Gaps = 38/457 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +W L + V N V++ V I+++YL E + G E Sbjct: 26 YTTWIAPLTVYEVKDNTVYILVKLKASLEHIQDKYLLPFKVCIAE----VTGTEY----- 76 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF-GSPLDSRFVFSTFIEGSSN 173 VE SP + K K + K ++ ++ + L+ ++ F TF+ GS+N Sbjct: 77 ---EVEFVTDSPKVIK--------EKKESSVQKTRVNAIYEKANLNPKYTFDTFVVGSNN 125 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 A A+ ++AE Y NPLF++ VGLGKTHL+ ++A+ ++ P+ +V+Y+T Sbjct: 126 NFAHAASLAVAESPGEIY-----NPLFLYGGVGLGKTHLMHSVAHYILEHDPSKKVLYVT 180 Query: 234 AEYFMWRFASAIR-----DNCALN-LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 +E F A++ + A+ ++ RN D+LLIDD+QF+ GK Q EF H N Sbjct: 181 SETFTNELIDALKVGKNGNELAMTTFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNH 240 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + DYE R +IL+ + + E Sbjct: 241 LHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPDYETRMAILRKKEELDGLE 300 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTG 404 K +I +EV+ ++A + ++ REL+G+ N+L+ + PI +A E L +++ Sbjct: 301 --KYHIPDEVMQYIANNIKSNIRELEGSLNKLIALSNLENKPI-DIPLAAEALKDMISPD 357 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +T+ + E I +V++H+N+ +L +R +V PRQ+ MYL + MT IG Sbjct: 358 DTRAVSPELIMDVVSEHFNVPVTELKGKKRNAEIVLPRQIVMYLCRNMTDTPLKSIGALL 417 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G +DH ++ H VRK+E L+TD L V ++K+ I+ Sbjct: 418 GGKDHASISHGVRKIENDLKTDEALNNTVNIIKKKIN 454 >gi|114330037|ref|YP_746259.1| chromosomal replication initiator protein DnaA [Nitrosomonas eutropha C91] gi|122314857|sp|Q0AK27|DNAA_NITEC RecName: Full=Chromosomal replication initiator protein DnaA gi|81251096|gb|ABB69893.1| DNA replication initiator protein [Nitrosomonas sp. CNS332] gi|114307051|gb|ABI58294.1| chromosomal replication initiator protein DnaA [Nitrosomonas eutropha C91] Length = 459 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 145/467 (31%), Positives = 243/467 (52%), Gaps = 24/467 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETI 93 E+ + K ++ + +W + LK + N + L P F+ WIK+ ++ I Sbjct: 5 ETFWYFCLKHFKQELNGQQFNTWIKPLKLEICPDVENTLVLIAPNRFVLQWIKDNFVNRI 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS-P 152 ++ Q + ++ ++ P+ KTA+ I P + K P T + Sbjct: 65 DEMAQGHFNEKIHFKLELKD---PAEIKTAT---IKAPEPKSKEDKKPPTDKAHGTTARK 118 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F F F+ G +N++A A +AE Y NPLFI+ VGLGKTHL Sbjct: 119 TNPSRLNPAFTFDAFVTGKANQLARAGAIQVAERPGIAY-----NPLFIYGGVGLGKTHL 173 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ N ++ ++ Y+ AE ++ SA + K ++DLLL+DD+QF Sbjct: 174 MHAVGNYVMELDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQFFS 233 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF + N+L+++ KQV+ +D P E+ L+ R+ SR G++V + + EM Sbjct: 234 GKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPELEM 293 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL + I K+ ++E +A+ + ++ REL+GA +++ F PI + Sbjct: 294 RVAILLKKAFIE-----KIELDESTAFFIAKYIRSNVRELEGALKRVLAYSRFTGHPI-S 347 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L L+ + +++ IE+IQ+ VA +Y I D+ S +RVR + RPRQVAM ++ Sbjct: 348 LDLAKEALKDLLAI-QNRQISIENIQKTVADYYKIKVADMYSKKRVRAIARPRQVAMAIA 406 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 K +T S P+IG FG RDHTTVLHA RK+ ++ +D + ++ L Sbjct: 407 KELTQLSLPDIGEAFGGRDHTTVLHAHRKIVELRASDPGINRDYSTL 453 >gi|325695760|gb|EGD37659.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK150] Length = 450 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 233/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ L P L W +N +T F+ + +I G I + + + +SP I+ Sbjct: 42 IIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETKIDTPKSAVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ ED + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSNQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|324989578|gb|EGC21524.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK353] Length = 450 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 233/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ L P L W +N +T F+ + +I G I + + + +SP I+ Sbjct: 42 IIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETKIDTPKSAVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ ED + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|322390524|ref|ZP_08064042.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 903] gi|321142798|gb|EFX38258.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 903] Length = 452 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/352 (36%), Positives = 201/352 (57%), Gaps = 15/352 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTH Sbjct: 108 PKIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N ++ PN RV Y+ AE F+ F +R K++ R++DLLLIDD+Q L Sbjct: 163 LLNAIGNQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSL 222 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L KQ+V +DR P L+SL+ R+ +R + G++ + D+ Sbjct: 223 GGKKVTTQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDF 282 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL+N++ ED + L ++A ++ R+L+GA N + + Sbjct: 283 ETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKE 337 Query: 388 LTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T ++A E + N +T + IE IQ V Y +S ++ +RRV+ +V RQVAM Sbjct: 338 ITIDVAAEAIRARKNDNSKTLVIPIEKIQEAVGAFYGVSVKEIKGSRRVQNIVLARQVAM 397 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 YLS+ MT S P IG+ FG +DHTTV+HA K++ M++TD L+ E++ +K+ Sbjct: 398 YLSREMTDNSLPRIGKEFGGKDHTTVIHAYEKIKSMVDTDDNLRLEIQSIKK 449 >gi|304439078|ref|ZP_07398997.1| DNA-directed DNA replication initiator protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372437|gb|EFM26024.1| DNA-directed DNA replication initiator protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 447 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 140/448 (31%), Positives = 239/448 (53%), Gaps = 38/448 (8%) Query: 55 YASWFQRL--KFHSVLHNIVHLSVPTNFLKAWIKNRYL--ETITKLFQEEHSRIQGVEIL 110 +++WFQR+ K +N ++VP F+K ++ N L + ++K E +EIL Sbjct: 26 FSTWFQRMVPKEIDKNNNKFIITVPNEFIKNYLSNSDLNMKLLSKCMYEASGIAYEIEIL 85 Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 PS PI KS L+ +++F FI G Sbjct: 86 AGDDEDPSSS-----------LPIEDAFEKSR---------------LNPKYIFENFIVG 119 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 SN A A+ + AE NPLFI+ VGLGKTHL+QAI + +++ + +V+ Sbjct: 120 KSNEFAHAASLAAAE-SYENPEAAHSNPLFIYGGVGLGKTHLMQAIGHFVLQQDISKKVL 178 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 Y+T+E FM +I++ + R++DLLLIDD+QF+ K Q EF H N+L Sbjct: 179 YVTSEQFMNELIDSIKNGRNEEFRRKYRSVDLLLIDDIQFIADKESTQEEFFHTFNALHG 238 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + KQ+V +D+PP +++SL R+ SR G+ V +G D E R +IL+ ++ + Sbjct: 239 ANKQIVLTSDKPPKDIKSLKERLVSRFAWGLVVDIGPPDLETRIAILR-----AKSDSEG 293 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKK 408 ++ E V+ ++A V ++ REL+GA ++ F ++T +IA + + + + Sbjct: 294 FDVPENVINYIAENVRSNIRELEGALTRVKAFSKLTKGVITEDIAKQAIKDIYKVKTVRV 353 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + + I+ +++K+YNI+ +D+LS++R + PRQ+AMYL++ +T S P IG+ FG RD Sbjct: 354 VDAKRIKEVISKNYNITIDDILSSKRTANIAFPRQIAMYLTRTLTDLSLPMIGQEFGGRD 413 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELL 496 HTTV++A+ K++ ++ D E++ L Sbjct: 414 HTTVMYAINKIDTRIKKDAEFSIEIQGL 441 >gi|312866847|ref|ZP_07727060.1| chromosomal replication initiator protein DnaA [Streptococcus parasanguinis F0405] gi|311097630|gb|EFQ55861.1| chromosomal replication initiator protein DnaA [Streptococcus parasanguinis F0405] Length = 452 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/352 (36%), Positives = 201/352 (57%), Gaps = 15/352 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTH Sbjct: 108 PKIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N ++ PN RV Y+ AE F+ F +R K++ R++DLLLIDD+Q L Sbjct: 163 LLNAIGNQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSL 222 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L KQ+V +DR P L+SL+ R+ +R + G++ + D+ Sbjct: 223 GGKKVTTQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDF 282 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL+N++ ED + L ++A ++ R+L+GA N + + Sbjct: 283 ETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKE 337 Query: 388 LTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T ++A E + N +T + IE IQ V Y +S ++ +RRV+ +V RQVAM Sbjct: 338 ITIDVAAEAIRARKNDNSKTLVIPIEKIQEAVGAFYGVSVKEIKGSRRVQNIVLARQVAM 397 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 YLS+ MT S P IG+ FG +DHTTV+HA K++ M++TD L+ E++ +K+ Sbjct: 398 YLSREMTDNSLPRIGKEFGGKDHTTVIHAYEKIKSMVDTDDNLRLEIQSIKK 449 >gi|330752438|emb|CBL87388.1| chromosomal replication initiation protein [uncultured Flavobacteria bacterium] Length = 475 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 145/482 (30%), Positives = 252/482 (52%), Gaps = 27/482 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E+++ S +K+ + P Y +WF+ + + + + VP+ F W++ Y++ + Sbjct: 5 AETVWRNCMSFIKDNIQPQAYKTWFEPISAIKLTDQSLSIQVPSKFFYEWLEEHYVKILK 64 Query: 95 KLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS-KSP 142 +E + +++ + +PS ++A + N N K+P Sbjct: 65 VALTKELGNEAKLVYIIKMENTYGNKQPFTEKIPSTNRSAIKSQRADIPLKNKNPELKNP 124 Query: 143 IIL-GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 ++ G + + S L+ + F F+EG SNR+A A IA + G T+ NPL I Sbjct: 125 FVIPGIRNVK--IESQLNPIYTFENFLEGDSNRLARNAG--IAVANKPGGTS--FNPLLI 178 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 VGLGKTHL AI + P V+Y++AE F ++ +++ N + + ID Sbjct: 179 FGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQIID 238 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + G+ Sbjct: 239 VLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKWGL 298 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S L D+E R SI+KN+L E ++E+V+ +VA+ + T+ REL+GA L+ Sbjct: 299 SAELQKPDFETRVSIVKNKLYRDGVE-----MSEDVIEYVAKNIKTNVRELEGAIISLIA 353 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + SF +T +A E++ V + +++ I+ IQ++V+ ++ + L S R R +V Sbjct: 354 QSSFNKKEITLGLAKEIVEKFVKNTK-REVSIDYIQKVVSDYFQMDVETLQSKTRKRHIV 412 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K VE L + Sbjct: 413 QARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLSSTDKQFRKYVEDLTKK 472 Query: 500 IS 501 +S Sbjct: 473 LS 474 >gi|171913561|ref|ZP_02929031.1| chromosomal replication initiation protein [Verrucomicrobium spinosum DSM 4136] Length = 526 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 145/483 (30%), Positives = 247/483 (51%), Gaps = 49/483 (10%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ + + +K ++GP ++ WFQR+ + + L VP + WI++ Y + + Sbjct: 30 EEPWSRIKALMKERIGPLMFERWFQRVGMQLLDDQRLVLLVPNLMHQYWIEDNYQQLLQV 89 Query: 96 LFQEEHSRIQGVEILVRSVAL-------------PSVEKTASSPSITKLSPINTNIS--- 139 E + ++ +V + A+ P+ K A + L P + + Sbjct: 90 AASEVLPGGREIDYMVAADAVSEPPVLKAVVAPSPAAVKEAQAAGAPNLVPASFDAGVAL 149 Query: 140 -------KSPIILGKQTIS--PVFGS-----------PLDSRFVFSTFIEGSSNRVALTA 179 K + K ++ P+F S L++RF F+ F+ G + + Sbjct: 150 TAKEAAKKMDRVTDKPEVATGPLFESDSRFNRLLMESGLNTRFSFNAFVVGPNCTYSCAV 209 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A+++AE Y NPLF+H +VGLGKTHL+QAI + +P V Y+T+E F Sbjct: 210 AKAVAEKPGRTY-----NPLFLHGAVGLGKTHLMQAIGREILHNKPKKVVRYVTSEAFTN 264 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 + A+R + + R +D+LLIDD+QF GK Q EF H N L +S KQ+V + Sbjct: 265 EYIEALRHSKVSAFRQKYRKVDVLLIDDIQFFAGKGSTQEEFFHTFNDLFNSFKQIVLTS 324 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DR PSE+++L+ R+ SR + G++ + D E R +IL+ ++ D + +++ VL Sbjct: 325 DRAPSEIKNLEARLVSRFEWGMATQIESPDLETRTAILRQKMV-----DWCVQVDDWVLS 379 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A + T+ R L+GA ++ S LT I + LL ++ + K + I+ IQ+ Sbjct: 380 FLAENIRTNVRRLEGALMRVAAHISLGNGGPLTQTIVETLLRDILEEPDAKAVTIDWIQK 439 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 +VA+H++I D+ S+RR ++ PRQ+AM+L++ +T S EIG FG RDH TV+HA Sbjct: 440 VVAEHFDIRLADMTSHRRPASIAIPRQIAMHLARELTKSSLKEIGDAFGGRDHGTVIHAC 499 Query: 477 RKV 479 + V Sbjct: 500 KAV 502 >gi|332519668|ref|ZP_08396132.1| chromosomal replication initiator protein DnaA [Lacinutrix algicola 5H-3-7-4] gi|332044227|gb|EGI80421.1| chromosomal replication initiator protein DnaA [Lacinutrix algicola 5H-3-7-4] Length = 475 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 143/486 (29%), Positives = 256/486 (52%), Gaps = 27/486 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +S++ + +K+ + P Y +WF+ + + N + + VP+ F W++ Y+ Sbjct: 1 MSITAQSVWNNCLNFIKDNIQPQAYKTWFEPIIAVKLTDNALSVQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----SVALPSVEKTASSP-SITKLSPINTNIS----- 139 + + +E + +++ P EK SS S K ++ + Sbjct: 61 KILKVALTKELGETAKLVYIIKMENTYGNKQPFTEKIPSSNRSAVKAQDVDVPLKNKDRE 120 Query: 140 -KSPIIL-GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 ++P ++ G + + S L+ + F F+EG SNR+A +A +++ G T+ N Sbjct: 121 LRNPFVIPGIRNVK--IESQLNPSYNFDNFLEGDSNRLARSAGLAVSA--KPGGTS--FN 174 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PL I VGLGKTHL AI + P V+Y++AE F ++ +++ N + Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIDSVKKNNRNDFIHFY 234 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR Sbjct: 235 QLIDVLVIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+S L D+E R SILKN+L E P E+++ +VA+ + ++ REL+GA Sbjct: 295 KWGLSAELQTPDFETRVSILKNKLYRDGVEMP-----EDIIEYVAKNIKSNIRELEGAII 349 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 L+ + SF + E+A +++ V + +++ I+ IQ++V+ ++ + + L S R Sbjct: 350 SLIAQSSFNKKEINIELAKQVVEKFVKNTK-REVSIDYIQKVVSDYFQMDVDTLQSKTRK 408 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K VE Sbjct: 409 RHIVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLSSTDKQFRKYVED 468 Query: 496 LKRLIS 501 L + +S Sbjct: 469 LTKKLS 474 >gi|332365094|gb|EGJ42859.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK355] Length = 450 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 233/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ L P L W +N +T F+ + +I G I + + + +SP I+ Sbjct: 42 IIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNIDTPKSAVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ ED + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|241895507|ref|ZP_04782803.1| DNA-directed DNA replication initiator protein [Weissella paramesenteroides ATCC 33313] gi|241871253|gb|EER75004.1| DNA-directed DNA replication initiator protein [Weissella paramesenteroides ATCC 33313] Length = 467 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 214/388 (55%), Gaps = 23/388 (5%) Query: 126 PSITKLSPINTNISKSPIILGK------QTISPVF--GSPLDSRFVFSTFIEGSSNRVAL 177 PS+T +SP T + P K +++ F S L+ F F TF+ NR A Sbjct: 90 PSVTYVSPTPTTLFDLPEDEEKVQQQNNASLASEFVTQSILNPEFRFETFVSSDENREAY 149 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AQ++A D G + NPL I+ VGLGKTHL+QAI N ++R PN V ++T E F Sbjct: 150 AVAQAVA--DKPG---TQWNPLLIYGGVGLGKTHLMQAIGNKVLERTPNANVKFITTEDF 204 Query: 238 MWRFASAIRDNCALN--LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 + F A+R K R+ DLL++DD+QFL GK IQ EF + N++ Q+ Sbjct: 205 INDFTEALRRGQKETEAFKREYRSTDLLMVDDVQFLAGKEKIQEEFFNTFNAITRENHQI 264 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V +D+ P E+ L+ R+ +R G S + D R +IL+N+ + L+I Sbjct: 265 VLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNKSDLE-----NLSIPN 319 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIED 413 +V+ +A V T+ R+L+G FNQ+V + F+ + +T E A +L + N + + I Sbjct: 320 DVIDEIAAAVDTNVRDLEGVFNQVVGKMRFSNVPVTVETARTILETM-NFKRQRAITIPI 378 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQ VA +N++ DL +R + +V PRQ+AMY+++ +T S P+IGR FG +DHTTV+ Sbjct: 379 IQEAVANFFNVTVQDLNGKKRNKEIVVPRQIAMYIARELTQDSLPQIGRAFGGKDHTTVM 438 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 H+ K+E +E D L ++V+ ++ +S Sbjct: 439 HSTEKIENAIENDSILAEQVQNIREELS 466 >gi|193211677|ref|YP_001997630.1| chromosomal replication initiation protein [Chlorobaculum parvum NCIB 8327] gi|193085154|gb|ACF10430.1| chromosomal replication initiator protein DnaA [Chlorobaculum parvum NCIB 8327] Length = 493 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 148/496 (29%), Positives = 260/496 (52%), Gaps = 42/496 (8%) Query: 17 IAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV 76 AEK N CLE+ E+I ++ + +WF ++ S + + + V Sbjct: 23 FAEKVWNA-----CLELIQENINSLA------------FKTWFLPIRPLSFSGSELTIEV 65 Query: 77 PTNFLKAWIKNRYLETITKLFQE---EHSRIQGVEILVRSVALP-SVE---KTASSPSIT 129 P+ F WI+ Y + + ++ +++ ++ +S P ++E + A +P+ + Sbjct: 66 PSQFFYEWIEENYSVHVKQALRQVIGPEAKLMYSIVMDKSQGQPVTIELPHQNAHAPTES 125 Query: 130 KLSPINTNISKSPIILGKQTIS---PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 P ++ P+ ++ F S L+ ++ FST I G N +A AA+SIA+ Sbjct: 126 DTKP---ERAQEPVSAERERFERNRTKFESNLNPKYTFSTLIRGDCNSLAFAAAKSIAQN 182 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 NPL I+ VGLGKTH++QAI N+ ++ + + V+Y+++E F F +AI+ Sbjct: 183 PGQN----AFNPLVIYGGVGLGKTHMMQAIGNSVLENRISGAVLYVSSEKFAIDFVNAIQ 238 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + RNID+L+IDD+QF GK Q E H+ N+L + KQ++ +ADRP E+ Sbjct: 239 NGNIQEFSAFYRNIDVLIIDDIQFFAGKEKTQEEIFHIFNTLHQANKQIILSADRPIKEI 298 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 + ++ R+ SR G+S + DYE R +I++++L + +N++ V+ +A VT Sbjct: 299 KGIEDRLISRFNWGLSTDIQAPDYETRKAIIQSKL-----KQNGVNLDPAVIEFIATNVT 353 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 + REL+G +L+ HS + + L ++ TK++ +E I++ V ++I Sbjct: 354 NNVRELEGCIVKLLAAHSLDNQEIDLQFTKSTLKDIIRYN-TKQLTLETIEKAVCSFFSI 412 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + NDL + + + RQ+AMYLSK MT S IG FG RDH+TV+HA+ +EK + Sbjct: 413 TPNDLKGKSKKKEIAVGRQIAMYLSKDMTDSSLKTIGLHFGGRDHSTVIHALNTIEKKIT 472 Query: 485 TDITLKKEVELLKRLI 500 + +K++E LK+ I Sbjct: 473 SSNEERKKIEELKKRI 488 >gi|302341687|ref|YP_003806216.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] gi|301638300|gb|ADK83622.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] Length = 457 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 134/467 (28%), Positives = 245/467 (52%), Gaps = 28/467 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V ++ QV + +W L + + +S P F WIK+ YL + ++ Sbjct: 10 LWEQVRQTMRGQVDHREFETWLAPLAMR-LEADWAVISAPNRFFVDWIKDHYLSQLEQVI 68 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + +R + +T + P + P+ + + ++ + Sbjct: 69 SQCAARPLRLRF-----------ETGNGP-VPASRPVEAQPALAQPAPAAPALTSLAQPT 116 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F TFI G+ N +A A +++A+ Y NPL I GLGKTHLL A+ Sbjct: 117 LKPGYTFETFIVGTCNELAHAACRAVAQQPGRQY-----NPLLIFGGAGLGKTHLLHAVG 171 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NA +R P +V+Y T E F A+R + ++ R +D LL+DD+QFL G+ Sbjct: 172 NAFYQRDPRAKVLYTTCEAFTNELIQAVRFDSIGRFQEKYRGLDCLLLDDIQFLAGRERT 231 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E H N+L +S Q+V +D PP EL+ + R+R+R +GG++ L E+ +IL Sbjct: 232 QEELFHTFNALQESGGQIVLTSDDPPRELQGVVKRLRTRFEGGLTADLQPPPSEIMVAIL 291 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 +++ A+++ ++++++V M +AR ++ R L+G N+++ F + +T E+A Sbjct: 292 QSK-ALAKG----MDLSDQVAMFLARQPESNVRVLEGYLNRIIAVSRFQGVEVTLELARR 346 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ L+ +++ +E++ + VA Y + +L S+R+ R V RPRQVAM+L++ +T + Sbjct: 347 VVGPLMAQ---RQVSVEEVLQTVAARYGVRVGELKSSRKTRDVTRPRQVAMFLARQLTGQ 403 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+PEIGR G +DH+TV+ V+K++ + + L +E+ L+R + E Sbjct: 404 SYPEIGRALGGKDHSTVVKGVKKIQGQMAREAALAEEIRTLERELLE 450 >gi|227877540|ref|ZP_03995601.1| DNA-directed DNA replication initiator protein [Lactobacillus crispatus JV-V01] gi|256843831|ref|ZP_05549318.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 125-2-CHN] gi|256849614|ref|ZP_05555046.1| chromosomal replication initiator protein dnaA [Lactobacillus crispatus MV-1A-US] gi|262046282|ref|ZP_06019245.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus MV-3A-US] gi|227862863|gb|EEJ70321.1| DNA-directed DNA replication initiator protein [Lactobacillus crispatus JV-V01] gi|256613736|gb|EEU18938.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 125-2-CHN] gi|256713730|gb|EEU28719.1| chromosomal replication initiator protein dnaA [Lactobacillus crispatus MV-1A-US] gi|260573612|gb|EEX30169.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus MV-3A-US] Length = 455 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 203/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QA+ Sbjct: 119 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAVG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 174 HQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFFAKKEGI 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 234 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 294 RRK-----AETEGLTIDDGTLNYIASQVDTNIRELEGA---LVKVQAYATIEKADIDVNL 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS+ + Sbjct: 346 AREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLSREL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++ D +K V LK+++ Sbjct: 406 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKLDSDIKTAVFDLKQIL 453 >gi|295691863|ref|YP_003600473.1| chromosomal replication initiator protein dnaa [Lactobacillus crispatus ST1] gi|295029969|emb|CBL49448.1| Chromosomal replication initiator protein dnaA [Lactobacillus crispatus ST1] Length = 455 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 203/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QA+ Sbjct: 119 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAVG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 174 HQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFFAKKEGI 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 234 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 294 RRK-----AETEGLTIDDGTLNYIASQVDTNIRELEGA---LVKVQAYATIEKADIDVNL 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS+ + Sbjct: 346 AREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLSREL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++ D +K V LK+++ Sbjct: 406 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKLDSDIKTAVFDLKQIL 453 >gi|14194696|sp|Q9RYE7|DNAA_DEIRA RecName: Full=Chromosomal replication initiator protein DnaA Length = 466 Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 156/477 (32%), Positives = 249/477 (52%), Gaps = 34/477 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + I+ V + ++ V Y +WF +K V + L V +F K W ++ YLE + Sbjct: 2 SQEIWADVLAYVRKNVSDLEYTTWFAPVKPLGVQEGSLLLGVRNSFTKDWFRDHYLELLL 61 Query: 95 KLFQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLSPINTNISKSPIILG--KQ 148 + + VE V A L + + + + P G ++ Sbjct: 62 AALRSLGAEHPQVEFQVLPAAQDALLLPNDPPPAPEAAAPTPKTKAAPTPPPSTPGDNRK 121 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T++P ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLG Sbjct: 122 TLNP--------KYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLG 168 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ A+ + +R P R+ Y++ E F +AIRD+ ++ R++DLLL+DD+ Sbjct: 169 KTHLMHAVGHYLAERFPEKRIEYVSTETFTNELINAIRDDKTTQFRNRYRSVDLLLVDDI 228 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L +S KQ++ ++DRPP ++++L+ R+RSR + G+ + Sbjct: 229 QFLAGKERTQEEFFHTFNALYESNKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSP 288 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 +YE R +ILK E + I +EVL +AR VT++ REL+GA ++V +FA + Sbjct: 289 EYETRVAILK-----MNAEQGHITIPQEVLELIARQVTSNIRELEGALMRVV---AFASL 340 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + A + LS++ E K+ + D+ R VA HY + + + + R R +V PRQ Sbjct: 341 NNVPFSRAAAAKALSNVFAPQEA-KVEMTDVLRQVAAHYGTTPDLIRGSGRARDIVVPRQ 399 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 VA YL + +T S PEIG+ FG RDH+TV+HAV K+ + + D L V L+ I Sbjct: 400 VAQYLIRALTDHSLPEIGQFFG-RDHSTVMHAVSKITEQMGKDPELAATVNTLRNRI 455 >gi|332709094|ref|ZP_08429063.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula 3L] gi|332352145|gb|EGJ31716.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula 3L] Length = 460 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 142/480 (29%), Positives = 257/480 (53%), Gaps = 38/480 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ E ++ V RLK Q+ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MKISPEELWIQVLERLKLQLSQPTFETWLKTTSAQQLDNNCLLIRTPNPFSRNWLQKYYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS------PINTNISKSPII 144 +TI + ++ IL + V + + T + S+T + P+ TN S++ Sbjct: 61 KTIADVVED---------ILGQPVEINFITATGDNNSMTADADFSWSFPVATNHSENTFK 111 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + + L+ + VFS F+ G +NR+A A+ ++ E Y NPLF+ Sbjct: 112 NQPRR------AKLNPKHVFSRFVVGPNNRMAHAASLAVGE-----YPGREFNPLFLCGG 160 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QAI + + P+ ++ Y++ E F SAIR++ + ++ R ++LL Sbjct: 161 VGLGKTHLMQAIGHYRLDNNPDSKIFYVSTEQFTNDLISAIREDSIQSFREHYRTAEVLL 220 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF++GK Q EF H N+L ++ KQ+V A+DRPP+++ SL+ R+ SR G+ Sbjct: 221 VDDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQINSLEERLCSRFSMGLIAD 280 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R +IL+ + ED + + +V+ ++A + T++ REL+GA + V + Sbjct: 281 IQPPDLETRMAILQKK-----AEDENIRLPHDVVEYIAASYTSNIRELEGALTRAV---T 332 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + I + E ++ ++N TKK++ E I ++ +N+S DL S+ R R + Sbjct: 333 YISIAGLAMNVENIAPILNP-PTKKIQASPEVILSTISDTFNLSVEDLKSSSRRREISWA 391 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+ MYL + T S P IG FG +DHTTV+++ K+ ++ E D L +++ L I+ Sbjct: 392 RQIGMYLMRQHTELSLPRIGEEFGGKDHTTVMYSCDKITQLREKDDELAQKLSQLSDRIN 451 >gi|310817279|ref|YP_003949637.1| chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] gi|309390351|gb|ADO67810.1| Chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] Length = 450 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 156/453 (34%), Positives = 244/453 (53%), Gaps = 39/453 (8%) Query: 49 QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE 108 Q G +W +R+ V + L VP F + W+ + Y L + +R+ E Sbjct: 27 QDGKTYALTWLERMCALDVREGALVLGVPDRFFRDWVDDHY----RALLESTLARVG--E 80 Query: 109 ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 L R VA VE A PS+ +++ +P+ P L RF F TF+ Sbjct: 81 GLGR-VAYEVVE--APPPSV--------HLAPTPVTATNAMRPPR----LSPRFTFGTFV 125 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 SN++ AA ++A+ H Y NPL+I+ GLGKTHLL A+ N +R P R Sbjct: 126 VADSNQLPAAAAAAVADKPGHHY-----NPLYIYGGTGLGKTHLLHAVGNLIWERNPAQR 180 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGKL--IQHEFCHLLN 285 VVYL++E F + ++R++ + R+ D+LLIDD+QFL GK Q EF + N Sbjct: 181 VVYLSSEQFTNEYVESVREHRMTEFRRKFRDECDVLLIDDIQFL-GKREETQKEFFYTFN 239 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L + K +V +D PSE+ L+ R+RSR G+ + YE R +IL+ + Sbjct: 240 TLYEQNKAIVLTSDTVPSEIPGLEDRLRSRFAMGLLTDIREPSYETRVAILQKK-----A 294 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTG 404 E L + ++V +A+ + + REL+GA +L HS + + +T E A ++L ++ T Sbjct: 295 EAEGLGLPDDVAHFIAKHIQKNVRELEGALVKLSAIHSLSRLPVTVEFAAQVLKDILPTH 354 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 ++ + +E IQR VA++Y ++ L +RR + + RQVAMYLS+ +T SFPEI RF Sbjct: 355 QS--VDVESIQREVARYYKVTVEALREDRRHKALAHARQVAMYLSRKLTKSSFPEIASRF 412 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 ++DH+TV+ AVRKVE + ETD LK+E++ L+ Sbjct: 413 -NKDHSTVISAVRKVEGLRETDAGLKRELDELE 444 >gi|320161310|ref|YP_004174534.1| chromosomal replication initiator protein DnaA [Anaerolinea thermophila UNI-1] gi|319995163|dbj|BAJ63934.1| chromosomal replication initiator protein DnaA [Anaerolinea thermophila UNI-1] Length = 447 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 144/467 (30%), Positives = 243/467 (52%), Gaps = 41/467 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N + + +L+ ++ + +W + + SV + + VP + + W+++R T Sbjct: 1 MNPQQAWQATLGQLQMEMNKASFETWVKDAQLISVEGSDFIIGVPNAYARDWLESRLTAT 60 Query: 93 ITKLFQEEHSRIQGVEILV---RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + ++ + V+ +V V +P E S +Q Sbjct: 61 VQRILEGLMGATPAVKFIVWHRDEVDMPEEEVPEES--------------------HQQA 100 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S ++SR+ F FI G+SNR+A A ++AE + Y NPLF++ VGLGK Sbjct: 101 FLRSGTSTINSRYTFDNFIVGASNRMAHAACMAVAESPAKAY-----NPLFLYGGVGLGK 155 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI NA+ R L+V+Y+++E F +AIR + ++ RN+D+LLIDD+Q Sbjct: 156 THLLHAIGNAAQSR--GLQVLYVSSEEFTNDLINAIRSHTTQAFRERYRNMDVLLIDDIQ 213 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L KQ+V ++DR P L +L+ R+RSR + G++V + D Sbjct: 214 FIAGKESTQEEFFHTFNTLHGQDKQIVISSDRSPKALVTLEERLRSRFEWGLTVDIQPPD 273 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL+++ + KE P +L +AR V ++ REL+GA +++ +F+ + Sbjct: 274 LETRIAILRSKAERNNKEVPY-----PILESIARLVQSNIRELEGALTRVL---AFSDLS 325 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQ--RMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 ++ +L+ + + ++ Q +VA + IS ++L+ R R V PRQVAM Sbjct: 326 GMPLSPQLVHTALADMLPNRTHLDSSQVLEVVASEFGISLDELVGRSRSREVALPRQVAM 385 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 YL + S P+IG G RDHTTV++A KV M+E D L++++ Sbjct: 386 YLMREEANASLPQIGEALGGRDHTTVMYACEKVADMIERDDRLRRKI 432 >gi|86604734|ref|YP_473497.1| chromosomal replication initiation protein [Synechococcus sp. JA-3-3Ab] gi|123724517|sp|Q2JQW9|DNAA_SYNJA RecName: Full=Chromosomal replication initiator protein DnaA gi|86553276|gb|ABC98234.1| chromosomal replication initiator protein DnaA [Synechococcus sp. JA-3-3Ab] Length = 467 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 143/475 (30%), Positives = 258/475 (54%), Gaps = 23/475 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ + ++ L+ Q+ + +W + + S++ N + +S P+ + + W++ Y Sbjct: 1 MDISLDRLWDEALGHLQVQLSRPTFEAWIKTARAESLVDNRLTISTPSEWARGWLQKHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPS--VEKTASSPSITKLS-PINTNISKSPIILGK 147 TIT++ Q R+ G+ + V P VE+ A S ++ S + + +P+ L Sbjct: 61 STITEVVQ----RVAGIPLQVEFSVAPQALVEEEAPSTAVASTSRKAGSFPASAPLGLEV 116 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 P+ L+ ++ FS F+ G +NR+A AA ++A+ Y NPLF+ VGL Sbjct: 117 SGSLPMRAPDLNPKYSFSRFVVGPNNRMAHAAALAVADKPGRAY-----NPLFLCGGVGL 171 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI + ++ P +V Y++ E F AIR + + ++ R++D+LL+DD Sbjct: 172 GKTHLMQAIGHYQLEANPRAKVFYVSTERFTNDLIDAIRRDSMQSFREHYRDVDILLVDD 231 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK Q EF H N+L +S KQ+V AADR P + L R+ SR G+ + Sbjct: 232 IQFIEGKEYTQEEFFHTFNTLHESGKQIVLAADRSPHLIPRLQERLCSRFSMGLIAEIQP 291 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +ILK + E + + EV+ ++A T T++ REL+GA + V ++ Sbjct: 292 PDIETRMAILKKK-----AEYEGMILPPEVIEYIATTYTSNIRELEGALIRAV---AYVS 343 Query: 387 ILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 I ++ E + ++N E K++ + I +V + + + R LL + R R + + RQ+A Sbjct: 344 ISGLPMSVETIQPILNPPSEPKEITPDMIIDVVCEEFGVDRESLLGSSRKRDISQARQIA 403 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRL 499 M+L + T S P+IG FG +DHTTVL++ KV ++ ++ +++++ L +RL Sbjct: 404 MFLMRHHTNLSLPKIGDYFGGKDHTTVLYSCEKVSQLQRENLQFERQLQNLAQRL 458 >gi|197302268|ref|ZP_03167327.1| hypothetical protein RUMLAC_00995 [Ruminococcus lactaris ATCC 29176] gi|197298699|gb|EDY33240.1| hypothetical protein RUMLAC_00995 [Ruminococcus lactaris ATCC 29176] Length = 456 Score = 220 bits (561), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 139/456 (30%), Positives = 243/456 (53%), Gaps = 36/456 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +W L + V N V++ V I+ +YL E I GVE V V Sbjct: 26 YNTWVAPLTVYEVKDNTVYILVKLKASLEHIEEKYLLPFKVCIAE----ITGVEYEVAFV 81 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 E TA ++ NT ++ I K ++P ++ F TF+ GS+NR Sbjct: 82 T----ENTAVIQEKKDIAVKNTRVNA---IYEKANLNP--------KYTFDTFVVGSNNR 126 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE Y NPLF++ VGLGKTHL+ ++A+ +K P+ +V+Y+T+ Sbjct: 127 FAHAASVAVAESPGESY-----NPLFLYGGVGLGKTHLMHSVAHYILKHDPSKKVLYVTS 181 Query: 235 EYFMWRFASAIR------DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 E F A++ + + ++ RN D+LLIDD+QF+ GK Q EF H N+L Sbjct: 182 ETFTNELIEALKVGKNGNEMAMTSFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNNL 241 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + KQ++ ++D+PP ++E+L+ R+R+R + G+ + DYE R +IL+ + + E Sbjct: 242 HLAGKQIIISSDKPPKDMETLEARLRTRFEWGMIADISSPDYETRMAILRKKEELDGLE- 300 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGE 405 K +I +EV+ ++A + ++ REL+G+ N+L+ + PI +A E L +++ + Sbjct: 301 -KYHIPDEVMQYIANNIKSNIRELEGSLNKLIALSNLENKPI-DIPLAAEALKDMISPDD 358 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 + + E I +V++H+N+ +L +R +V PRQ+ MYL + MT IG G Sbjct: 359 NRAVSPELIIEVVSEHFNVPVAELKGKKRNAEIVLPRQIVMYLCRNMTDTPLKSIGALLG 418 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +DH ++ H V+K+E+ ++TD L + ++++ I+ Sbjct: 419 GKDHASISHGVKKIEQDMKTDEALNNTINIIRKKIN 454 >gi|21672843|ref|NP_660908.1| chromosomal replication initiator protein DnaA [Chlorobium tepidum TLS] gi|38257655|sp|Q8KGG6|DNAA_CHLTE RecName: Full=Chromosomal replication initiator protein DnaA gi|21645891|gb|AAM71250.1| chromosomal replication initiator protein DnaA [Chlorobium tepidum TLS] Length = 493 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 139/475 (29%), Positives = 252/475 (53%), Gaps = 19/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E +++ ++ + + +WF ++ S + + + VP+ F WI+ Y + Sbjct: 24 AEKVWSACLGLIQENINTLAFKTWFLPIRPLSFSGSELTIEVPSQFFYEWIEENYSVHVK 83 Query: 95 KLFQE---EHSRIQGVEILVRSVALP-SVE---KTASSPSITKLSPINTNISKSPIILGK 147 + ++ +++ ++ +S P ++E + ++P+ + P S Sbjct: 84 QALRQVIGPEAKLMYSIVIDKSQGQPVTIELPHQIDAAPAERSVRPEAPGQKASAERERL 143 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + P F S L+ ++ FST + G N +A A++SIA+ NPL I+ VGL Sbjct: 144 EIARPRFESNLNPKYTFSTLVRGDCNSLAFAASKSIAQNPGQN----AFNPLVIYGGVGL 199 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTH++QAI N+ ++ + V+Y+++E F F +AI++ RNID+L+IDD Sbjct: 200 GKTHMMQAIGNSVLENRITDAVLYVSSEKFAIDFVNAIQNGNIQEFSAFYRNIDVLIIDD 259 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q E H+ N+L S KQ++ +ADRP E++ ++ R+ SR G+S + Sbjct: 260 IQFFAGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKEIKGIEDRLISRFNWGLSTDIQA 319 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE R +I++++L S ++++ V+ +A VT++ REL+G +L+ HS Sbjct: 320 PDYETRKAIIQSKLKQS-----GVSLDPVVIEFIATNVTSNVRELEGCIVKLLAAHSLDN 374 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + + A L ++ TK++ +E I++ V +++I+ NDL + + + RQ+A Sbjct: 375 QEIDLQFAKSTLKDIIRYN-TKQLTLETIEKAVCSYFSITSNDLKGKSKKKEIAVGRQIA 433 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYLSK MT S IG FG RDH+TV+HA+ +EK + +K++E L++ I Sbjct: 434 MYLSKDMTDSSLKTIGLHFGGRDHSTVIHALNTIEKKIAASNEERKKIEELRKRI 488 >gi|255994571|ref|ZP_05427706.1| ATPase involved in DNA replication initiation [Eubacterium saphenum ATCC 49989] gi|255993284|gb|EEU03373.1| ATPase involved in DNA replication initiation [Eubacterium saphenum ATCC 49989] Length = 455 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 147/470 (31%), Positives = 243/470 (51%), Gaps = 34/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAW--IKNRYL 90 +N E ++ ++N + P Y SW + L+ + L++ T+ + + I+ R L Sbjct: 11 MNIEDLWKKTKKNIENSISPTSYDSWIKNLELIGFDDSTSTLTLSTDNMISINIIEKRLL 70 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ++ + E+ + + + +E + + K+ ++N I+ + + Sbjct: 71 HSM---------KTSAKEVFEQDINI-KIEYRENKRTKNKIK--DSNKGDFDILFEENIL 118 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P ++ F F+ G +NR A A SIA + Y NP F++ GLGKT Sbjct: 119 NP--------KYTFDNFVVGDNNRHAHAVALSIANSEISEY-----NPFFLYGGPGLGKT 165 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI +K P +V+Y+ AE F ++IR + K+ R +D+LLIDD+QF Sbjct: 166 HLMHAIGMTIMKNFPYKKVLYVPAETFTTDLINSIRKSSQEEFKNKYRMVDVLLIDDIQF 225 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 +QGK Q EF H NSL KQ+V ++DR P+ L LD R+RSR V+ + ++ Sbjct: 226 MQGKESTQEEFFHTFNSLTRLGKQIVISSDRSPNHLNKLDERLRSRFMQNVTTDIKPANF 285 Query: 330 EMRFSILKNRLAISQKE-DPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPI 387 E R +IL+ + I E D LN EV+ +A + + R L+GA +L+ F Sbjct: 286 ETRVAILQKKCEIENFEVDANLN---EVINLIAHNIDNNIRALEGALTKLISFSRLLNEK 342 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + A + L + E K + E I+ +V+ ++NIS +DL S R + PRQ+AM+ Sbjct: 343 ITIDYAKKNLPEIFKNRENK-ISCETIKIIVSNYFNISISDLESKNRKKEFTIPRQIAMF 401 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 L + +T S P+IG FG +DH+TVLHA RK++K+ ETD +K +E +K Sbjct: 402 LCRELTGDSLPKIGELFGGKDHSTVLHACRKIKKLEETDNYIKISIEEIK 451 >gi|104773258|ref|YP_618238.1| chromosomal replication initiation protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513229|ref|YP_812135.1| chromosomal replication initiation protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122276000|sp|Q04CX5|DNAA_LACDB RecName: Full=Chromosomal replication initiator protein DnaA gi|122984030|sp|Q1GC43|DNAA_LACDA RecName: Full=Chromosomal replication initiator protein DnaA gi|103422339|emb|CAI96847.1| Chromosomal replication initiator protein dnaA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092544|gb|ABJ57697.1| DNA replication ATPase initiation [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325124856|gb|ADY84186.1| Chromosomal replication initiator protein dnaA [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 454 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 156/480 (32%), Positives = 253/480 (52%), Gaps = 43/480 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLK---FHSVLHNIVHLSVPTNFLKA-WIKNRY 89 + E + ++ ++++ Y +WF+ K F+ H +V +SV T K W +N Sbjct: 3 DLEKFWDSFNAEMRSEFNEVSYNAWFKNTKPVSFNKDTHELV-ISVQTPVAKGYWEQN-- 59 Query: 90 LETITKLFQEEHSRIQGVEI----LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 L Q ++ G++I +V++ PS E+ L P + Sbjct: 60 --ISANLIQSAYA-YAGIDIYPVFVVKNGPTPSSERM--------LEPQPQAKPEKARPQ 108 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 G++ + L+ ++ F FI+G N++A AA ++A+ Y NPLFI V Sbjct: 109 GREFTKDL---RLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFY-----NPLFIFGGV 160 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ R DLLL+ Sbjct: 161 GLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLLLV 220 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + Sbjct: 221 DDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEI 280 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + E L I+E L +VA V T+ REL+GA LV + Sbjct: 281 TPPDLETRIAILRKKA-----ESEGLEIDESTLDYVASQVDTNIRELEGA---LVKVQAQ 332 Query: 385 APILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 A I +I A L+ L +++ ++I IQ +VA ++ S DL +RVR +V Sbjct: 333 ATIQKQDINIGLARSALADLKLVQKSRGLQISKIQEVVANYFQTSVPDLKGKKRVRQIVI 392 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYLS+ +T S P+IG+ FG +DHTTV+HA K+ + ++TD +K V L++++ Sbjct: 393 PRQIAMYLSRELTDASLPKIGQEFGGKDHTTVMHACDKIARQIKTDTEIKSAVSDLRQML 452 >gi|125716888|ref|YP_001034021.1| chromosomal replication initiation protein [Streptococcus sanguinis SK36] gi|125496805|gb|ABN43471.1| Chromosomal replication initiator protein dnaA, putative [Streptococcus sanguinis SK36] Length = 450 Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 232/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ L P L W +N +T F+ + +I G I + + +SP I+ Sbjct: 42 IIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNTETSKSVVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ ED + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|296875521|ref|ZP_06899593.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 15912] gi|296433445|gb|EFH19220.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 15912] Length = 452 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 128/352 (36%), Positives = 201/352 (57%), Gaps = 15/352 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTH Sbjct: 108 PKIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N ++ PN RV Y+ AE F+ F +R K++ R++DLLLIDD+Q L Sbjct: 163 LLNAIGNQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSL 222 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L KQ+V +DR P L+SL+ R+ +R + G++ + D+ Sbjct: 223 GGKKVTTQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDF 282 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL+N++ ED + L ++A ++ R+L+GA N + + Sbjct: 283 ETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKE 337 Query: 388 LTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T ++A E + N + + + IE IQ V Y +S ++ +RRV+ +V RQVAM Sbjct: 338 ITIDVAAEAIRARKNDSSQMLVIPIEKIQEAVGAFYGVSVKEIKGSRRVQNIVLARQVAM 397 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 YLS+ MT S P IG+ FG +DHTTV+HA K++ M++TD L+ E++ +K+ Sbjct: 398 YLSREMTDNSLPRIGKEFGGKDHTTVIHAYEKIKSMVDTDDNLRLEIQSIKK 449 >gi|228476806|ref|ZP_04061454.1| chromosomal replication initiator protein DnaA [Streptococcus salivarius SK126] gi|228251543|gb|EEK10680.1| chromosomal replication initiator protein DnaA [Streptococcus salivarius SK126] Length = 454 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 143/425 (33%), Positives = 231/425 (54%), Gaps = 31/425 (7%) Query: 90 LETITKLFQEEHSR----IQGVEILVRSVALPSVEKTA----SSPSITKLSPINTNISKS 141 LE + KLF E++ + + G E + + V A ++ ++T N ++ Sbjct: 46 LEEVKKLFWEKNMQSFILMAGFEAYNSEIKVEYVFDEALLNEANSTVTNNDFGNKKEQQT 105 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P + P S L+S++ F FI+G NR ++ A+ ++A DS G T NPLFI Sbjct: 106 PAL-------PTLDSDLNSKYTFDNFIQGDENRWSVAASLAVA--DSPGAT---YNPLFI 153 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL AI N + P R+ Y+TAE F+ F IR + LK R++D Sbjct: 154 YGGPGLGKTHLLNAIGNKVLHDNPQARIKYITAENFINEFVVHIRLDKMDELKLKYRHLD 213 Query: 262 LLLIDDMQFLQGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +LLIDD+Q L K Q EF + N L ++ KQ+V +DR P +L ++ R+ +R + Sbjct: 214 VLLIDDIQSLAKKSTQATQEEFFNTFNVLHNNNKQIVLTSDRNPDQLNEMEERLVTRFKW 273 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ- 377 G++V + D+E R +IL N++ D + E + ++A ++ R+L+GA Sbjct: 274 GLTVNITPPDFETRVAILTNKIM-----DYDYHFPPETIEYLAGQFDSNVRDLEGALKDI 328 Query: 378 -LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 LV +T E+A E + + ++ + + IEDIQ V K YN++ ++ + +R Sbjct: 329 SLVANVRQLDTITVEVAAEAIRARKMDGPKLTLIPIEDIQTEVGKFYNVTVKEIKATKRT 388 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 + +V RQVAMYL++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E++ Sbjct: 389 QNIVLARQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIAQDDSLRIEIDT 448 Query: 496 LKRLI 500 +K I Sbjct: 449 IKNKI 453 >gi|322388480|ref|ZP_08062083.1| DNA-directed DNA replication initiator protein [Streptococcus infantis ATCC 700779] gi|321140793|gb|EFX36295.1| DNA-directed DNA replication initiator protein [Streptococcus infantis ATCC 700779] Length = 453 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 132/354 (37%), Positives = 198/354 (55%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L + F FI+G N A +AA +++E Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLRDIYTFDNFIQGDGNIWAKSAALAVSEDPGLTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N +K+ PN RV Y+ AE F+ F +R N N K + R++DLLLIDD+Q L Sbjct: 164 LLNALGNEILKKNPNARVKYIPAESFINEFLDHLRLNDMDNFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLIQ--HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 G +Q EF + N L + KQ+V +DR P +LE+L R+ +R G++ + D+ Sbjct: 224 SGNKVQTQDEFFNTFNKLHSNNKQIVLTSDRRPEQLENLPERLVTRFSWGLTTDITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL S+ ED + + + ++A ++ REL+GA + I Sbjct: 284 ETRIAILN-----SKTEDLDYHFQPDTIEYLAGQFDSNVRELEGALKDISLMAKVKQINT 338 Query: 388 LTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + T + IE IQ V K Y++S ++ RRV +V RQVAM Sbjct: 339 ITVDIASEAIRARKQSVSTMIVIPIEKIQEEVGKFYDVSVKEMKGTRRVLNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IG+ FG +DHTTV+HA K++ M+ETD L+ E+E +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSMIETDDKLRIEIETIKKKI 452 >gi|326692341|ref|ZP_08229346.1| chromosomal replication initiation protein [Leuconostoc argentinum KCTC 3773] Length = 448 Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 155/481 (32%), Positives = 243/481 (50%), Gaps = 53/481 (11%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPT----NFLKAWIKNR 88 + E ++ V ++ ++GP + ++ + L ++ + + L VP + + W K+ Sbjct: 5 ITKEELWNQVKAKFYQEIGPVSFDTYIEPLTPITLTESRIVLEVPAEESADIIDNWNKSY 64 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + S +Q + P + S P K +PI T + Sbjct: 65 AM-----------SFVQYAMEIAEGFIKPELRVAESLP---KSTPIQT-----------E 99 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 ++ S L+ F F F+ G+ N A A+++AE Y NP I+ VGLG Sbjct: 100 NLTFTRESDLNENFTFDKFVVGAGNENAYAIARAVAEDPGRVY-----NPYLIYGGVGLG 154 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLID 266 KTHL+QAI NA K P+ R+ Y TAE F+ F ++R + K R +DLLLID Sbjct: 155 KTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRTVDLLLID 214 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK +Q EF + N L + KQ++ +D+ P+E+ L R+ SR + G+S+ + Sbjct: 215 DIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQ 274 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ----LVFR 381 D R +ILKN LA E L I +VL +A + ++ R L+G F++ L FR Sbjct: 275 KPDLPTRVAILKN-LA----ETDNLTIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRFR 329 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + A T E A ++L L N + K+ +E IQ++VA +Y + +DL S R + +V Sbjct: 330 NKPA---TKETAQQILGDL-NINQGFKITVERIQQVVADYYMQTIDDLKSTSRKKDLVTA 385 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R VAMYL++ +T S P+IGR FG RDH++VLHA K+ + E+D K E+L L Sbjct: 386 RHVAMYLTRTLTNESLPDIGRAFGGRDHSSVLHATNKITEKAESDARTK---EMLDALTD 442 Query: 502 E 502 E Sbjct: 443 E 443 >gi|332359496|gb|EGJ37315.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1056] Length = 450 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 147/435 (33%), Positives = 232/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ L P L W +N +T F+ + +I G I + + +SP I+ Sbjct: 42 IIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNTETPKSVVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ ED + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|144149|gb|AAA73149.1| dnaA [Buchnera aphidicola] Length = 431 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 149/446 (33%), Positives = 247/446 (55%), Gaps = 19/446 (4%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 W + LK + +NI+ + P F+ W+K++YL K+ Q+ + V Sbjct: 2 WIRSLK-AKLNNNILEIYAPNQFILDWVKDKYLIHFKKILQDFCG--SNSPFIKFKVYQT 58 Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 S EK + K+ +N I + K++ S ++ + F FIEG SN++A Sbjct: 59 SKEKKFKKNILQKIQNLNAKPIWDKIPIFKKSSHR---SNINKKHSFENFIEGKSNQLAR 115 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AA +A+ + Y NPLF++ GLGKTHLL AI N + + N++++Y+ +E F Sbjct: 116 AAASQVAKNPGNSY-----NPLFLYGGTGLGKTHLLHAIGNGILAYKYNVKIIYMHSERF 170 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 + A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ Sbjct: 171 VQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQEEFFHTFNALLEGNQQIIL 230 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 +DR P E+ ++ R++SR G++V + + E R +IL I + ++ + +++EV Sbjct: 231 TSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAIL-----IKKADENNIVLSDEV 285 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQ 415 +A+ + ++ REL+GA N+++ +F +T E E L ++ E K + I +IQ Sbjct: 286 AFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVREALRDILALQE-KLVTIANIQ 344 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + VA++Y I DLLS RR R+V RPRQ+AM ++K +T S PEIG F RDHTTVLHA Sbjct: 345 KTVAEYYKIKVADLLSRRRSRSVARPRQMAMAMAKELTNHSLPEIGDAFSGRDHTTVLHA 404 Query: 476 VRKVEKMLETDITLKKEVELLKRLIS 501 RK+E++ + + +K++ L R +S Sbjct: 405 CRKIEQLRKENHDIKEDFSNLIRTLS 430 >gi|257091664|ref|YP_003165305.1| chromosomal replication initiation protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044188|gb|ACV33376.1| chromosomal replication initiator protein DnaA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 473 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 147/477 (30%), Positives = 250/477 (52%), Gaps = 29/477 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQ--RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S ++ S+ + ++ P + +W + RL+ + L P F+ W+K RYL I Sbjct: 3 SFWSSCLSQFEQELPPQQFNTWIRPLRLEGEEDFARGLRLLAPNGFILKWVKERYLARIE 62 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI-ILGKQTISPV 153 +L E + G+ + + A P + SPS K SP + + + + + T Sbjct: 63 ELGSEYFAAPVGITLTLGGRAAPPKDLAPDSPS--KDSPSGDGKTAAKVNAVNRHTSLLK 120 Query: 154 FGSPLD------------SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 GS +D F F I G +N +A A++ +A S G T NPLFI Sbjct: 121 NGSLVDRDRPSYEKTRLIPTFTFENLIVGKANDLARAASRQVAI--SPGEAT--YNPLFI 176 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHL+ AI N ++ P+ V Y+ AE + A + K R++D Sbjct: 177 YGGAGLGKTHLIHAIGNHILECFPDRIVRYVHAEDYYSDVVRAYQQKSFDVFKRYYRSLD 236 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LL+DD+ F GK Q EF + N+L ++ KQ+V ++D P + L+ R+ +R G+ Sbjct: 237 VLLLDDVHFFNGKNRTQEEFFFVFNALSEAKKQLVISSDTYPKNISGLEDRLVTRFDWGL 296 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +ILK + + + +++EV +VA+ + ++ REL+GA +++ Sbjct: 297 TVQIEPPETEMRVAILKKKAELE-----GVLLDDEVAFYVAKHLRSNVRELEGALKKVLA 351 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 +F + ++A E L ++ + +++ +++IQ+ VA ++ I DL S +R R +V Sbjct: 352 YSAFHGREIALDLAKEALKDVIGS-VNRQITVDNIQKTVADYFKIKVADLFSKKRTRVIV 410 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 RPRQ+AM+L+K +T +S+P IG FG RDHTTVLHAVR ++ + D L +V +L Sbjct: 411 RPRQIAMWLTKNLTSQSYPSIGEAFGGRDHTTVLHAVRTIDDLRAKDNELNHDVHVL 467 >gi|71905643|ref|YP_283230.1| chromosomal replication initiator protein DnaA [Dechloromonas aromatica RCB] gi|123760693|sp|Q47K71|DNAA_DECAR RecName: Full=Chromosomal replication initiator protein DnaA gi|71845264|gb|AAZ44760.1| chromosomal replication initiator protein, DnaA [Dechloromonas aromatica RCB] Length = 465 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 140/454 (30%), Positives = 236/454 (51%), Gaps = 35/454 (7%) Query: 45 RLKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 R + ++ + +W + L+ + L + + L P F+ W+++RYL I E++ Sbjct: 11 RFEQELPAQQFNTWIKPLRLEGESTALEDGLRLIAPNGFILKWVRDRYLTRI-----EDY 65 Query: 102 SR--IQG---VEILVRSVALPSVEKTASSPSITKLSPIN------TNISKSPIILGKQTI 150 SR +G + +++ S + A++ + +P N + S GK Sbjct: 66 SRTFFEGPVTIALVIGSGKATAARIQATTTDSGQNAPANPATTSEKRTAASEKARGKG-- 123 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S S L F F + G +N +A AA +A Y NPLFI+ GLGKT Sbjct: 124 SNYEKSRLFPSFTFDNLVVGKANDLARAAAVQVANNPGGAY-----NPLFIYGGAGLGKT 178 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI N P V Y+ AE + A + + K + R++D+LL+DD+QF Sbjct: 179 HLIHAIGNTIATENPEKIVRYVHAEDYYSDVVRAYQQKSFDSFKRTYRSLDVLLLDDVQF 238 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF L N+L+++ KQ++ D P ++ LD R+ +R G++V + + Sbjct: 239 FNGKNRSQEEFFFLFNALIEARKQIIITCDTYPKDINGLDDRLVTRFDWGLTVQIEPPEL 298 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 EMR +ILK + E + +++EV +A+ + ++ REL+GA +++ SF ++ Sbjct: 299 EMRVAILKKK-----AEAEGIQLDDEVAFFIAKHLRSNVRELEGALKKVLAYSSFHGRVI 353 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A E L ++ G + + +++IQ+ VA +Y I +L S +R R + RPRQVAM+L Sbjct: 354 ALDLAKEALKDVI--GSVRNVGMDNIQKTVADYYKIKVAELFSKKRTRAIARPRQVAMWL 411 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 + +T SFPEIG FG RDHTTV+HAV+ ++ + Sbjct: 412 CREVTSHSFPEIGDAFGGRDHTTVIHAVKTIDSL 445 >gi|313122776|ref|YP_004033035.1| chromosomal replication initiator protein dnaa [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279339|gb|ADQ60058.1| Chromosomal replication initiator protein dnaA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 454 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 202/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F FI+G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 118 LNEKYTFENFIQGEGNKLAAGAALAVADNPGTFY-----NPLFIFGGVGLGKTHLMQAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +P+ +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 173 HQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLLLVDDIQFFAKKEGI 232 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 233 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAIL 292 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I+E L +VA V T+ REL+GA LV + A I +I Sbjct: 293 RKKA-----ESEGLEIDESTLDYVASQVDTNIRELEGA---LVKVQAQATIQKQDINIGL 344 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L+ L +++ ++I IQ +VA ++ S DL +RVR +V PRQ+AMYLS+ + Sbjct: 345 ARSALADLKLVQKSRGLQISKIQEVVANYFQTSVPDLKGKKRVRQIVIPRQIAMYLSREL 404 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K+ + ++TD +K V L++++ Sbjct: 405 TDASLPKIGQEFGGKDHTTVMHACDKIARQIKTDTEIKSAVSDLRQML 452 >gi|300811995|ref|ZP_07092451.1| chromosomal replication initiator protein DnaA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497021|gb|EFK32087.1| chromosomal replication initiator protein DnaA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 454 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 131/348 (37%), Positives = 202/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F FI+G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 118 LNEKYTFENFIQGEGNKLAAGAALAVADNPGTFY-----NPLFIFGGVGLGKTHLMQAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +P+ +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 173 HQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLLLVDDIQFFAKKEGI 232 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 233 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAIL 292 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E L I+E L +VA V T+ REL+GA LV + A I +I Sbjct: 293 RKKA-----ESEGLEIDESTLDYVASQVDTNIRELEGA---LVKVQAQATIQKQDINIGL 344 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L+ L +++ ++I IQ +VA ++ S DL +RVR +V PRQ+AMYLS+ + Sbjct: 345 ARSALADLKLVQKSRGLQISKIQEVVANYFQTSVPDLKGKKRVRQIVIPRQIAMYLSREL 404 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K+ + ++TD +K V L++++ Sbjct: 405 TDASLPKIGQEFGGKDHTTVMHACDKIARQIKTDTEIKSAVSDLRQML 452 >gi|149278936|ref|ZP_01885070.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] gi|149230215|gb|EDM35600.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] Length = 490 Score = 219 bits (559), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 145/492 (29%), Positives = 261/492 (53%), Gaps = 40/492 (8%) Query: 26 VDKRCLEV--NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 ++K C+EV NC I +K+ + + +WF+ + + N++ + VP+ F Sbjct: 15 MEKTCIEVWKNCLQI-------IKDNIPGQSFKTWFEPISALKLEGNVLTIQVPSLFFYE 67 Query: 84 WIKNRYLETITKLFQE---EHSRIQGVEILVRSVA--------LPSVEKTASSPSITKLS 132 W++ Y+ + K ++ E R++ ++ +S +PS A S + Sbjct: 68 WLEEHYVGLLRKTVKKQLGEDGRLEYNIVVDKSSGSGSPYTTNIPSNGNGAESKFQSMPI 127 Query: 133 PINTNIS-KSPII---LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 P++ N K+P I L K + P L+S + F +IEG NR+A +A ++A Sbjct: 128 PVSINKDIKNPFIIPGLKKLQVDP----QLNSNYTFENYIEGDCNRLARSAGYAVAA--K 181 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 G T+ NPL I+ VGLGKTHL QAI N + P+ V+Y++ E F +F ++++N Sbjct: 182 PGGTS--FNPLMIYGGVGLGKTHLAQAIGNEIKRNMPDKLVIYVSCEKFCQQFVDSLKNN 239 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + + + +D++++DD+ GK Q F H+ N L S KQ++ ++D+ P +L Sbjct: 240 TINDFVNFYQAMDVIIMDDVHNFSGKEKTQDIFFHIFNHLHQSGKQIILSSDKSPKDLVG 299 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 L+ R+ SR + G+S L + D E R +ILK ++ E P EV+ +VA + + Sbjct: 300 LEERLLSRFKWGLSADLQVPDLETRIAILKKKMYADGIELP-----AEVVEYVAHNIDNN 354 Query: 368 GRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA L+ + + + ++A ++L + + +K++ +E IQ++V +++ + Sbjct: 355 VRELEGAMVSLLAQSTLNKKDIDLDLAKQMLKNFIKN-TSKEISMEYIQKLVCEYFEVPV 413 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 + + S R R +V+ RQ++MYLSK T S IG FG RDH+TV++A + VE +++TD Sbjct: 414 DMVKSATRKREIVQARQISMYLSKSHTKSSLKTIGAFFGGRDHSTVIYACQTVEDLIDTD 473 Query: 487 ITLKKEVELLKR 498 K V +++ Sbjct: 474 KKFKGYVHDIQK 485 >gi|226942152|ref|YP_002797226.1| DnaA [Laribacter hongkongensis HLHK9] gi|254777904|sp|C1D6I2|DNAA_LARHH RecName: Full=Chromosomal replication initiator protein DnaA gi|226717079|gb|ACO76217.1| DnaA [Laribacter hongkongensis HLHK9] Length = 481 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 133/394 (33%), Positives = 216/394 (54%), Gaps = 35/394 (8%) Query: 110 LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 +V V LP+V+ TA P+I G ++ + L+ F F + + Sbjct: 118 IVSDVPLPNVKLTAPKPAIGG---------------GHES------TRLNPAFTFESLVT 156 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G N++A AA IA D+ G +T NP F++ VGLGKTHL+QAI N ++ P ++ Sbjct: 157 GKGNQLARAAALQIA--DNPGDST--YNPFFVYGGVGLGKTHLIQAIGNHVYQKNPQAKI 212 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 Y+ AE ++ A + K ++DLLLIDD+QF GK EF + N+LL Sbjct: 213 RYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDDIQFFAGKNRTMEEFFYAFNALL 272 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + KQV+ D P ++E +D R+ SR G++V + + EMR +IL + + E Sbjct: 273 EGGKQVIMTCDSYPKQIEGMDERLISRFSWGLTVEIQPPELEMRVAIL-----MKKAEAD 327 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGET 406 L + +V +A+ V ++ REL+GA ++V F+ PI + ++ E L ++ G Sbjct: 328 NLKLGNDVAFFIAQNVRSNVRELEGALKRVVAYSRFSNQPI-SLDLVKEALKDILAAG-N 385 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 +++ +++IQ+ VA +Y I +D+ S +R R + RPRQVAM L+K +T S P IG FG Sbjct: 386 RQISVDNIQKTVADYYKIKLSDMHSKKRSRDIARPRQVAMALAKELTSMSLPNIGDAFGG 445 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RDHTTVLHA + + +M E+D + ++ L++++ Sbjct: 446 RDHTTVLHACKTIAEMRESDPDISRDYAALQQML 479 >gi|311696593|gb|ADP99466.1| chromosomal replication initiation protein [marine bacterium HP15] Length = 480 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 158/506 (31%), Positives = 255/506 (50%), Gaps = 63/506 (12%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 +CLEV L+++ + +W + L+ ++ L P F+ W+ + Sbjct: 4 QCLEV------------LRDEFPAQQFNTWLRPLQSDHREGQLM-LFAPNRFVMDWVNEK 50 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALP-----------------SVEKTASSPSITKL 131 YL I ++ ++ + Q + ++ + P V++ A S + Sbjct: 51 YLRRIEEVLKDLNGG-QAPRVNMKVGSAPREGEPVKRSEAPARVNGQVQEEAGSRVTEEE 109 Query: 132 SPINTNISKSPIILGKQTIS--PV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 + ++ +P + K PV S L+ F F TF+EG SN++A A+ Sbjct: 110 KGVAATVASTPSVRPKSDTQRRPVQVEGDIKHQSFLNEGFTFETFVEGKSNQLARAASMQ 169 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +AE Y NPLF++ VGLGKTHL+ AI N ++R P +V YL +E F+ Sbjct: 170 VAENPGGAY-----NPLFLYGGVGLGKTHLMHAIGNEIVRRNPKAKVAYLRSERFVADMV 224 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ DR Sbjct: 225 KALQLNAINEFKRYYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVIVTCDRF 284 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ ++ R++SR G++V + + E R +IL + + + + ++ E +A Sbjct: 285 PKEIVDMEERLKSRFGWGLTVMVEPPELETRVAIL-----MKKADQANVKLSSEAAFFIA 339 Query: 362 RTVTTSGRELDGAFNQLVFRHSFA------PILTAEIADELLSHLVNTGETKKMRIEDIQ 415 + + ++ REL+GA ++ F P + + D L H K++ I++IQ Sbjct: 340 QKIRSNVRELEGALRLVIANAHFTGSEITPPFIRESLKDLLALH------EKQVSIDNIQ 393 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 R VA++Y I DLLS RR RTV RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 394 RTVAEYYKIKVADLLSKRRTRTVTRPRQVAMALSKELTNHSLPEIGDAFGGRDHTTVLHA 453 Query: 476 VRKVEKMLETDITLKKEVELLKRLIS 501 +K+ ++ ETD ++++ + RL++ Sbjct: 454 CKKIVELQETDPGIREDYQNFMRLLT 479 >gi|227494189|ref|ZP_03924505.1| DNA-directed DNA replication initiator protein [Actinomyces coleocanis DSM 15436] gi|226831923|gb|EEH64306.1| DNA-directed DNA replication initiator protein [Actinomyces coleocanis DSM 15436] Length = 464 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 135/350 (38%), Positives = 215/350 (61%), Gaps = 24/350 (6%) Query: 151 SPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +PV F S L+ ++VF TF+ GSSNR A AA AE Y NPLFI+ GLGK Sbjct: 114 TPVAFDSRLNPKYVFDTFVIGSSNRFANAAAAQTAEQPGKVY-----NPLFIYGDSGLGK 168 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI N +++ P+L+V Y+++E F F ++IR A + + R ID+LLIDD+Q Sbjct: 169 THLIQAIGNYALELAPHLKVRYVSSEEFTNDFINSIRTGRAEDFQRRYREIDILLIDDIQ 228 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+QGK EF H N+L ++ KQV+ +D PP L L+ R+RSR + G++V + + Sbjct: 229 FIQGKEQTVEEFFHTFNTLYNAEKQVIITSDVPPKMLSGLEDRLRSRFEMGLTVDIKPPE 288 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + I++ L+++ EVL ++A ++++ REL+GA L+ ++A + Sbjct: 289 LETRIAILRKK-TIAE----NLDVDNEVLEYIASRISSNIRELEGA---LIRVTAYANLT 340 Query: 388 ---LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY-NISRNDLLSNRRVRTVVRPRQ 443 +T +A+ +L +++ ++ I I +A++Y +++ L S R +T+V RQ Sbjct: 341 KQEVTRSLAEVVLKDIISDPGDSEITISLIMGQIAEYYQDVTIEHLCSADRTKTLVEARQ 400 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 +AMYL + +T S P+IG+ FG RDHTTV+HA RK+ K +I LK+E+ Sbjct: 401 IAMYLCRELTDLSLPKIGQAFGGRDHTTVMHAYRKISK----EINLKREI 446 >gi|15805044|ref|NP_293728.1| chromosomal replication initiation protein [Deinococcus radiodurans R1] gi|6457661|gb|AAF09596.1|AE001864_2 chromosomal replication initiator protein [Deinococcus radiodurans R1] Length = 454 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 153/457 (33%), Positives = 241/457 (52%), Gaps = 34/457 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +WF +K V + L V +F K W ++ YLE + + + VE V Sbjct: 10 YTTWFAPVKPLGVQEGSLLLGVRNSFTKDWFRDHYLELLLAALRSLGAEHPQVEFQVLPA 69 Query: 115 A----LPSVEKTASSPSITKLSPINTNISKSPIILG--KQTISPVFGSPLDSRFVFSTFI 168 A L + + + + P G ++T++P ++ F F+ Sbjct: 70 AQDALLLPNDPPPAPEAAAPTPKTKAAPTPPPSTPGDNRKTLNP--------KYTFENFV 121 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ A+ + +R P R Sbjct: 122 VGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLGKTHLMHAVGHYLAERFPEKR 176 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 + Y++ E F +AIRD+ ++ R++DLLL+DD+QFL GK Q EF H N+L Sbjct: 177 IEYVSTETFTNELINAIRDDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFHTFNAL 236 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 +S KQ++ ++DRPP ++++L+ R+RSR + G+ + +YE R +ILK E Sbjct: 237 YESNKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEYETRVAILK-----MNAEQ 291 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNT 403 + I +EVL +AR VT++ REL+GA ++V +FA + + A + LS++ Sbjct: 292 GHITIPQEVLELIARQVTSNIRELEGALMRVV---AFASLNNVPFSRAAAAKALSNVFAP 348 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 E K+ + D+ R VA HY + + + + R R +V PRQVA YL + +T S PEIG+ Sbjct: 349 QEA-KVEMTDVLRQVAAHYGTTPDLIRGSGRARDIVVPRQVAQYLIRALTDHSLPEIGQF 407 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG RDH+TV+HAV K+ + + D L V L+ I Sbjct: 408 FG-RDHSTVMHAVSKITEQMGKDPELAATVNTLRNRI 443 >gi|332294862|ref|YP_004436785.1| Chromosomal replication initiator protein dnaA [Thermodesulfobium narugense DSM 14796] gi|332177965|gb|AEE13654.1| Chromosomal replication initiator protein dnaA [Thermodesulfobium narugense DSM 14796] Length = 442 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 125/344 (36%), Positives = 200/344 (58%), Gaps = 14/344 (4%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 S++ F TF+ G NR+A A+ ++A+ Y NPLFI+ GLGKTHLLQAIA Sbjct: 107 SKYTFETFVVGPGNRMAHAASLAVADNPGKAY-----NPLFIYGGAGLGKTHLLQAIATT 161 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 ++PNL ++Y+T+E F F +AI+D+ + ++ RNID+LL+DD+QF+ GK Q Sbjct: 162 IRSKKPNLYILYITSEKFTNEFINAIKDDKINSFQEHYRNIDILLVDDIQFIAGKERTQE 221 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L +S KQ+V ++DRPP E+ +L+ R+R+R + G+ + D E R +IL+ Sbjct: 222 EFFHTFNTLYESGKQIVLSSDRPPKEIRTLEERLRTRFEMGLIADIQPPDLETRIAILQK 281 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADEL 396 + I ++I+ E L+ +A V ++ REL+G + + S +T + A E Sbjct: 282 KAEIEN-----IDIDPEALVLIAEKVASNIRELEGVLTKSMALCSINQESRITIKHAQEA 336 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L ++ + +++I V+K I DL S R RQ+AMYL + MT S Sbjct: 337 LKNIEDNKLNNLPTMDEIAIAVSKVMQIKLEDLKSRGRKSHQANARQIAMYLCREMTKNS 396 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+IG FG RDH+TV+HA ++++ + D TLK+ +E ++ + Sbjct: 397 LPQIGEYFG-RDHSTVIHAYERIKEDINKDQTLKRIIEQIRSFL 439 >gi|332364164|gb|EGJ41941.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK49] Length = 450 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 146/435 (33%), Positives = 232/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 ++ L P L W +N +T F+ + +I G I + + +SP I+ Sbjct: 42 VIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNTETPKSAVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ ED + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSNQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|323350829|ref|ZP_08086488.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis VMC66] gi|322123003|gb|EFX94706.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis VMC66] gi|325686477|gb|EGD28506.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK72] gi|327463834|gb|EGF10150.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1057] Length = 450 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 146/435 (33%), Positives = 232/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 ++ L P L W +N +T F+ + +I G I + + +SP I+ Sbjct: 42 VIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNTETSKSVVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ ED + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|300172303|ref|YP_003771468.1| chromosomal replication initiator protein DnaA [Leuconostoc gasicomitatum LMG 18811] gi|299886681|emb|CBL90649.1| chromosomal replication initiator protein DnaA [Leuconostoc gasicomitatum LMG 18811] Length = 448 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 132/346 (38%), Positives = 196/346 (56%), Gaps = 17/346 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+ G+ N A A+++AE Y NP I+ VGLGKTHL+QA Sbjct: 107 SDLNENFTFDKFVVGTGNENAYAIARAVAEDPGRVY-----NPYLIYGGVGLGKTHLMQA 161 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQG 273 I NA K P+ R+ Y TAE F+ F ++R + K R +DLLLIDD+QF G Sbjct: 162 IGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAVFKKEYRTVDLLLIDDIQFWSG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +Q EF + N L + KQ++ +D+ P+E+ L R+ SR + G+S+ + D R Sbjct: 222 KEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQKPDLPTR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTA 390 +ILKN LA E L I +VL +A + ++ R L+G F++ + R+ P T Sbjct: 282 VAILKN-LA----ETDNLEIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRYRNKPA-TK 335 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A ++L L N + K+ +E IQ++VA +Y + +DL S R + +V R VAMYL++ Sbjct: 336 ETAQKILGDL-NINQGFKITVERIQQVVADYYMQTIDDLKSTSRKKDLVTARHVAMYLTR 394 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +T S P+IGR FG RDH++VLHA K+ + E+D K+ +E L Sbjct: 395 TLTNESLPDIGRSFGGRDHSSVLHATNKITEKAESDARTKEMLEAL 440 >gi|170016359|ref|YP_001727278.1| chromosomal replication initiator protein DnaA [Leuconostoc citreum KM20] gi|169803216|gb|ACA81834.1| Chromosomal replication initiator protein DnaA [Leuconostoc citreum KM20] Length = 448 Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 156/487 (32%), Positives = 249/487 (51%), Gaps = 65/487 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP----TNFLKAWIKN- 87 + E ++ + ++ ++GP + ++ + L ++ + + L VP T+ + W K+ Sbjct: 5 ITKEELWNQIKAKFYQEIGPVSFDTYIEPLIPITLTESSIILEVPADESTDIIDNWNKSY 64 Query: 88 -----RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 +Y I + F + R+ +IL +++ L T+ + + T+ S +N N Sbjct: 65 AMSFVQYAMEIAEGFIKPELRV--ADILPKTMPL-----TSENLTFTRESDLNEN----- 112 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 F F F+ G+ N A A+++AE Y NP I+ Sbjct: 113 -------------------FTFDKFVVGTGNENAYAIARAVAEDPGRVY-----NPYLIY 148 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNI 260 VGLGKTHL+QAI NA K P+ R+ Y TAE F+ F ++R + K R + Sbjct: 149 GGVGLGKTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRTV 208 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLLLIDD+QF GK +Q EF + N L + KQ++ +D+ P+E+ L R+ SR + G Sbjct: 209 DLLLIDDIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAG 268 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-- 377 +S+ + D R +ILKN LA E L I +VL +A + ++ R L+G F++ Sbjct: 269 ISMDIQKPDLPTRVAILKN-LA----ETDGLTIPNDVLELIADKIDSNIRTLEGTFHRFE 323 Query: 378 --LVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 L FR+ A T E A ++L L N + K+ +E IQ++VA +Y + +DL S R Sbjct: 324 AMLRFRNKPA---TKETAQQILGDL-NINQGFKITVERIQQVVADYYMQTIDDLKSTSRK 379 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 + +V R VAMYL++ +T S P+IGR FG RDH++VLHA K+ + E+D K E+ Sbjct: 380 KDLVTARHVAMYLTRTLTNESLPDIGRSFGGRDHSSVLHATNKITEKAESDARTK---EM 436 Query: 496 LKRLISE 502 L L E Sbjct: 437 LDALTDE 443 >gi|293380891|ref|ZP_06626927.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 214-1] gi|290922564|gb|EFD99530.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 214-1] Length = 455 Score = 219 bits (558), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 129/348 (37%), Positives = 202/348 (58%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QA+ Sbjct: 119 LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAVG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 174 HQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFFAKKEGI 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 234 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E I++ L ++A V T+ REL+GA LV ++A I A+I Sbjct: 294 RRK-----AETEGWTIDDGTLNYIASQVDTNIRELEGA---LVKVQAYATIEKADIDVNL 345 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS+ + Sbjct: 346 AREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLSREL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG +DHTTV+HA K++K ++ D +K V LK+++ Sbjct: 406 TDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKLDSDIKTAVFDLKQIL 453 >gi|34495456|ref|NP_899671.1| chromosomal replication iniciator protein DnaA [Chromobacterium violaceum ATCC 12472] gi|61212703|sp|Q7P259|DNAA_CHRVO RecName: Full=Chromosomal replication initiator protein DnaA gi|34101312|gb|AAQ57681.1| chromosomal replication iniciator protein DnaA [Chromobacterium violaceum ATCC 12472] Length = 467 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 148/474 (31%), Positives = 240/474 (50%), Gaps = 46/474 (9%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +RL+ ++ + +W + L + I L P F+ +IK+R+L I +L Sbjct: 13 ARLEAELSSQQFNTWIKPLTAEAGDEGIA-LFAPNRFIMQFIKDRFLPRIEEL------- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTN--------------ISKSPIILGKQT 149 VE++ LP VE +P+ +P+ N +P + Sbjct: 65 --AVELVGE---LP-VELRLGAPTARPAAPVAGNSQPKAKEPAKAAASAPAAPSPAKQAA 118 Query: 150 ISPVFGSPLDSR----FVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHAS 204 + + GS +R F F T + G N++A AA IAE Y NPLF++ Sbjct: 119 VKAIGGSHESTRLNPSFTFDTLVTGKGNQLARAAAMQIAENPGDQAY-----NPLFVYGG 173 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QAI N ++ P ++ Y+ AE ++ A + K ++DLLL Sbjct: 174 VGLGKTHLIQAIGNHVFQKNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLL 233 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF GK Q EF + N+L++ KQV+ D P ++E ++ R+ SR G++V Sbjct: 234 IDDIQFFAGKNRTQEEFFYAFNALIEGGKQVIMTCDSYPKQIEGMEERLISRFSWGLTVE 293 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + EMR +IL + + E + + V +A+ V ++ REL+GA ++V Sbjct: 294 IQPPELEMRVAIL-----MKKAEADSIKLEHNVAFFIAQNVRSNVRELEGALKRVVAYAR 348 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F + +T E+ E L ++ G +++ ++ IQ+ VA++Y I +D+ S +R R + RPR Sbjct: 349 FTSQNITLELVKEALKDILAAG-NRQVTVDAIQKTVAEYYKIKLSDMHSKKRSRDIARPR 407 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 QVAM L+K +T S P IG FG RDHTTVLHA + + +M +D + + E L Sbjct: 408 QVAMALAKELTQLSLPNIGDAFGGRDHTTVLHACKTITEMRASDADIAHDYEAL 461 >gi|320535593|ref|ZP_08035690.1| replication initiator protein DnaA [Treponema phagedenis F0421] gi|320147556|gb|EFW39075.1| replication initiator protein DnaA [Treponema phagedenis F0421] Length = 466 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 152/462 (32%), Positives = 244/462 (52%), Gaps = 19/462 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +LK ++ + WF ++ F+S + + +SVP++F + +Y + + F E I Sbjct: 16 QLKEELNQGEFNMWFIQIDFNSSSDDSIEISVPSDFFRKEFSQKYQKKLENKFLE----I 71 Query: 105 QGVEILVRSV-ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 G EI ++ V P + +A+ I P + Q I + L + Sbjct: 72 SGHEISLQYVIKKPKLTNSANKSII----PEKKEEKREERKEKPQKIKNSHPA-LKDNYT 126 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G + AA S+A+ Y NPL I VGLGKTHL+QAI N I R Sbjct: 127 FDNFVAGEDLKFTQNAALSVAKFPGKNY-----NPLLILGGVGLGKTHLMQAIGN-EIYR 180 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +L ++Y+TAE F F SA+ K+ R D+LLIDD+ F Q K +Q E H Sbjct: 181 TTDLNIIYVTAESFSNEFISALGSKKTQEFKNKYRKADVLLIDDIHFFQNKDGLQEELFH 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N+L +S +Q+V DRP EL++ R++SR G++V L + +E R +IL +L I Sbjct: 241 TFNALYESGRQIVFTCDRPIKELKNFSERLKSRCTRGLNVDLTMPSFETRCAILIKKLEI 300 Query: 343 SQKEDPKLNI--NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 K +P NI ++E++ +A+ V ++ R+L+G +++ + +T +I +LL Sbjct: 301 YNKSNPDKNIKISDEIIHLIAQNVFSNVRDLEGCLTKIIAFTEISGEVTIDIIPDLLKDF 360 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + K + ++ I R+VA+ +NIS DL S +R +T+ PRQ+AMYL++ MT S E+ Sbjct: 361 FYLPKPKNVSVDIILRVVAEDFNISYVDLKSKKRTKTIAYPRQIAMYLARQMTELSTTEL 420 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G FG RDHTT++H V K+E + + +L+ + LK ISE Sbjct: 421 GVEFGGRDHTTIIHGVEKIENEILINPSLQANLNSLKNTISE 462 >gi|227485757|ref|ZP_03916073.1| DNA-directed DNA replication initiator protein [Anaerococcus lactolyticus ATCC 51172] gi|227236312|gb|EEI86327.1| DNA-directed DNA replication initiator protein [Anaerococcus lactolyticus ATCC 51172] Length = 459 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 148/479 (30%), Positives = 252/479 (52%), Gaps = 44/479 (9%) Query: 42 VSSRLKNQVGPDV-----YASWFQRLKFHSVLHNIVHLSVPTN-----FLKAWIKNRYLE 91 +++ LKN++ V + +W LK ++ ++++L +P F W K + E Sbjct: 7 ITNELKNEMKMHVSDKQQFNTWINILKPLNLHKDVLYLEIPKKDTLFIFEGIW-KAKLQE 65 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + ++ +++ VE++ + K+ + + K G+ I Sbjct: 66 ALDGIAEKIGGKLK-VEVVAKD-----------GEDYQKILTLGRDYDKD----GQMRID 109 Query: 152 PVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 V P L+ VF F++G SN+ AL +Q++A+ S G + NPLFI+ S GLG Sbjct: 110 KVKSFPKPQLEEANVFENFVQGKSNQYALGISQAVADTISRGDVSKVYNPLFIYGSSGLG 169 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAIA+ ++ + + V+YL++E F +A+R N ++ R+ D+LLIDD+ Sbjct: 170 KTHLIQAIAHQILEARDDAYVMYLSSEKFTNEMIAALRTNKNQEFREKYRSADILLIDDI 229 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ K Q EF H N L ++ KQ+V +D+PP E++ L+ R+ SR G+ + Sbjct: 230 QFIANKEATQEEFFHTFNDLYNAGKQIVITSDKPPREIKHLEDRLVSRFNYGIIADISRP 289 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN-QLVFRHSFAP 386 DYE R +IL+ +L ED I+ +L ++A + T+ R+L+GA + + + S Sbjct: 290 DYETRVAILQKKL-----EDLGAIIDNSILSYIALEIDTNIRDLEGALSTAIAYAKSDGR 344 Query: 387 ILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 I E++ E V T + KK+ I DIQ+ VA YN+ DL R + +V PRQ Sbjct: 345 I---EVSMEDAIKGVGTRVKNKRKKLTIADIQQAVANKYNVKLQDLKGKSRKKEIVNPRQ 401 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +AM++S+ + S I F +RDHTTV+H + K+ M++ D LK E++ L + I + Sbjct: 402 IAMFISRELLDDSLVTIANAF-ERDHTTVIHGIDKITDMIDEDEDLKNEIDALIKEIKD 459 >gi|199598234|ref|ZP_03211655.1| DNA replication ATPase initiation [Lactobacillus rhamnosus HN001] gi|258506996|ref|YP_003169747.1| chromosomal replication initiation protein [Lactobacillus rhamnosus GG] gi|258538192|ref|YP_003172691.1| chromosomal replication initiation protein [Lactobacillus rhamnosus Lc 705] gi|199590837|gb|EDY98922.1| DNA replication ATPase initiation [Lactobacillus rhamnosus HN001] gi|257146923|emb|CAR85896.1| Chromosomal replication initiator protein dnaA [Lactobacillus rhamnosus GG] gi|257149868|emb|CAR88840.1| Chromosomal replication initiator protein dnaA [Lactobacillus rhamnosus Lc 705] gi|259648366|dbj|BAI40528.1| chromosomal replication initiator protein DnaA [Lactobacillus rhamnosus GG] Length = 449 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 146/473 (30%), Positives = 251/473 (53%), Gaps = 36/473 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLET 92 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA W KN + Sbjct: 3 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTQDKLEIEVPASLHKAYWEKNLVTKV 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + +++ + V I+ + +L P +T+ + Q ++ Sbjct: 63 VEGVYEFAQLEVDPV-IMTKD----------------ELQPASTHQHQVTDDDDDQQLTF 105 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ F F+ G N++A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 106 KAKTHLNPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTY-----NPLFIYGGVGLGKTHL 160 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N ++ P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 161 MQAIGNLVLENNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFG 220 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 221 DKEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLET 280 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+N+ + ED L+I ++ L ++A + ++ R+L+GA LV +F+ + Sbjct: 281 RIAILRNK---ANAED--LSIPDDTLSYIAGQIESNVRDLEGA---LVRVQAFSTMKNED 332 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMY Sbjct: 333 ITTSLAADALKALKLDDRSGQLTIPQILDAVAKYFQVTVQDLKGKKRVKQIVIPRQIAMY 392 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ MT S P+IG+ G +DHTTV+HA K+ + T+ LK V L+ ++ Sbjct: 393 LAREMTDNSLPKIGQEIGGKDHTTVIHAHEKIMAAMTTNEDLKAHVVELRNIL 445 >gi|284034944|ref|YP_003384874.1| chromosomal replication initiator protein DnaA [Spirosoma linguale DSM 74] gi|283814237|gb|ADB36075.1| chromosomal replication initiator protein DnaA [Spirosoma linguale DSM 74] Length = 469 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 148/456 (32%), Positives = 243/456 (53%), Gaps = 28/456 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE--ILVR 112 + +WF+ + + +++ + VP+ F W++ ++ + K R +E I+V Sbjct: 25 FNTWFEPIVPLRLNGHVLTIQVPSEFFYEWLEENFVHALRKALDTAIGRDGQLEYSIIVD 84 Query: 113 ---------SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +V +P+ + T +S K +N +I KSP L K S S L+ + Sbjct: 85 KGNEQNRPLTVNVPTTKSTQTS----KPDNVNPDILKSPFQL-KDLDSLTLDSYLNPSYT 139 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F ++EG NR+A +A ++AE G T+ NPL I+ VGLGKTHL+QAI N Sbjct: 140 FDNYVEGDCNRLARSAGYAVAE--RPGVTS--FNPLMIYGGVGLGKTHLVQAIGNFIKNN 195 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCH 282 V+Y+T+E F +F +A+R + + +D+L+IDD+QFLQ K E F H Sbjct: 196 NQGKFVLYVTSEKFTNQFLNAVRSDGIRDFTSFYMQVDVLVIDDVQFLQKKEKTQEIFFH 255 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + N L S KQ++ +DR P L+ L+ R+ SR + G+S L D E R +I++ +L Sbjct: 256 IFNHLHQSGKQIIMTSDRAPRALDGLEDRLLSRFKWGLSADLQTPDLETRIAIIQKKL-- 313 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLV 401 Q E + I++ V+ ++A +V T+ REL+G L+ + S + E+A + L ++V Sbjct: 314 -QAE--GIYIDDTVIEYLAHSVNTNVRELEGVIVSLMAQASLNRREIDLELAKQTLRNIV 370 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 +++ I+ +Q VA +N++ DL + R R +V PRQ+AMYL+K T S IG Sbjct: 371 -VDSDREVTIDSVQEAVASFFNVTIADLKAKSRKRELVHPRQIAMYLAKEKTDLSLKSIG 429 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 FG RDH+TV+HAV+ V ++ + +E LK Sbjct: 430 YHFGGRDHSTVIHAVQTVSDLVAKHAETRDIIEKLK 465 >gi|91216500|ref|ZP_01253466.1| chromosomal replication initiation protein [Psychroflexus torquis ATCC 700755] gi|91185294|gb|EAS71671.1| chromosomal replication initiation protein [Psychroflexus torquis ATCC 700755] Length = 476 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 139/467 (29%), Positives = 253/467 (54%), Gaps = 27/467 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+ + Y +WFQ + + N + + VP+ F W++ Y++ + +E + Sbjct: 16 VKDNISDQAYKTWFQPINAVKLNDNALSIQVPSKFFYEWLEEHYVDLLKVALTKEIGKGA 75 Query: 106 GVEILVR-----------SVALPSVEKT-ASSPSITKLSPINTNISKSPIIL-GKQTISP 152 + ++R + +PS +++ +S SI S ++P ++ G + + Sbjct: 76 KLVYVIRMENAKGNRQPFTEKIPSTQRSNVNSQSIDFPSRQKNPELRNPFVIPGIRNLK- 134 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+S + F F+EG+SNR+A +A S+A + G T+ NPL I VGLGKTHL Sbjct: 135 -IDSQLNSNYTFDNFLEGTSNRLARSA--SLAVANKPGGTS--FNPLLIFGGVGLGKTHL 189 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI + P+ V+Y++A+ F + A+ N + + +D+L++DD+Q + Sbjct: 190 AHAIGLQVKDKFPDKTVLYISADKFTQQHIDAVSKNNRNDFIHFYQIVDVLIVDDIQLIS 249 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q F H+ N L + KQV+ +D+ P +++ + R+ SR + G+S L D+E Sbjct: 250 GKKGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIQQRLLSRFKWGLSAELAQPDFET 309 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R I+KN+L + + + +E+L +VA +T + REL+GA L+ +F+ +T Sbjct: 310 RIKIIKNKLY-----NDGVEMADEILDYVASRITANIRELEGAIISLIAHSTFSKKEITI 364 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A++++ + V + K + ++DIQ +V+ +++I +L S R R VV+ RQ+AMY +K Sbjct: 365 DLAEQIVKNYVKNNK-KPISLDDIQNVVSDYFHIEIEELQSKSRKRNVVQARQIAMYFAK 423 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +T S IGR G RDH+TVLH+ + V + E+D +K ++ L+ Sbjct: 424 EITKTSLTSIGRHIGQRDHSTVLHSCKIVSNLQESDKQYRKFIQDLE 470 >gi|324991866|gb|EGC23789.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK405] gi|324996244|gb|EGC28154.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK678] gi|325698032|gb|EGD39913.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK160] gi|327458490|gb|EGF04840.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1] gi|327471608|gb|EGF17051.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK408] Length = 450 Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 146/435 (33%), Positives = 232/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 ++ L P L W +N +T F+ + +I G I + + +SP I+ Sbjct: 42 VIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNTETPKSVVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ ED + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|229551104|ref|ZP_04439829.1| DNA-directed DNA replication initiator protein [Lactobacillus rhamnosus LMS2-1] gi|229315565|gb|EEN81538.1| DNA-directed DNA replication initiator protein [Lactobacillus rhamnosus LMS2-1] Length = 468 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 146/473 (30%), Positives = 251/473 (53%), Gaps = 36/473 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLET 92 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA W KN + Sbjct: 22 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTQDKLEIEVPASLHKAYWEKNLVTKV 81 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + +++ + V I+ + +L P +T+ + Q ++ Sbjct: 82 VEGVYEFAQLEVDPV-IMTKD----------------ELQPASTHQHQVTDDDDDQQLTF 124 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ F F+ G N++A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 125 KAKTHLNPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTY-----NPLFIYGGVGLGKTHL 179 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N ++ P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 180 MQAIGNLVLENNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFG 239 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 240 DKEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLET 299 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+N+ + ED L+I ++ L ++A + ++ R+L+GA LV +F+ + Sbjct: 300 RIAILRNK---ANAED--LSIPDDTLSYIAGQIESNVRDLEGA---LVRVQAFSTMKNED 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMY Sbjct: 352 ITTSLAADALKALKLDDRSGQLTIPQILDAVAKYFQVTVQDLKGKKRVKQIVIPRQIAMY 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ MT S P+IG+ G +DHTTV+HA K+ + T+ LK V L+ ++ Sbjct: 412 LAREMTDNSLPKIGQEIGGKDHTTVIHAHEKIMAAMTTNEDLKAHVVELRNIL 464 >gi|255017120|ref|ZP_05289246.1| chromosomal replication initiation protein [Listeria monocytogenes FSL F2-515] Length = 295 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 116/299 (38%), Positives = 184/299 (61%), Gaps = 12/299 (4%) Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N +V+YL++E F F Sbjct: 3 AVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDNAKVMYLSSEKFTNEF 57 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 S+IRDN + RN+D+LLIDD+QFL GK Q EF H N+L D KQ++ ++DR Sbjct: 58 ISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLYDEQKQIIISSDR 117 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PP E+ +L+ R+RSR + G+ + D E R +IL+ + K D L+I EV++++ Sbjct: 118 PPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AKAD-GLDIPNEVMLYI 172 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A + ++ REL+GA ++V S +TA +A E L ++ + +++ + I IQ V Sbjct: 173 ANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSSKSQVITISGIQEAVG 232 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA K Sbjct: 233 EYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEFGGRDHTTVIHAHEK 291 >gi|91785914|ref|YP_546866.1| chromosomal replication initiation protein [Polaromonas sp. JS666] gi|91695139|gb|ABE41968.1| chromosomal replication initiator protein DnaA [Polaromonas sp. JS666] Length = 464 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 150/451 (33%), Positives = 239/451 (52%), Gaps = 23/451 (5%) Query: 55 YASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 + +W + L H + V + V F WI+ +Y I+ L + +I G I + Sbjct: 30 FNTWIRPLVVHVAADLSKVTIQVGNRFKLDWIRAQYAARISALLE----KISGHRISL-E 84 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG--KQTISPVFGSPLDSRFVFSTFIEGS 171 +AL E A S S+T+ S +++ P LG ++ F + L+S F T IEG+ Sbjct: 85 LALAPREPAAKSASLTR-SFEGVGVAE-PAGLGVPEEAAGAPFKNRLNSALTFDTLIEGT 142 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 +NR+ AA ++ Y NPLFI+ VGLGKTHL+ AI N + P +V+Y Sbjct: 143 ANRMGRAAALHVSSSLGQLY-----NPLFIYGGVGLGKTHLMHAIGNKLLADNPAAKVLY 197 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + AE F+ A + K+ ++DLLLIDD+QF K Q EF + +LL Sbjct: 198 IHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLTK 257 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 +V +D P L + R+ SR G++V + + EMR +IL I + E Sbjct: 258 KSHIVMTSDTYPKGLTDIHERLVSRFDSGLTVAIEPPELEMRVAIL-----IRKAEAEGT 312 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKM 409 + EEV VA+ V ++ REL+GA +++ F ++ ++A E L L++ + +++ Sbjct: 313 VMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNLKEISIQLAREALRDLLSI-QNRQI 371 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDH Sbjct: 372 SVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDH 431 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TTVLHAVRK+ + L +++ +L++ + Sbjct: 432 TTVLHAVRKMSAERQQMTELNQQLHVLEQTL 462 >gi|237756304|ref|ZP_04584858.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium yellowstonense SS-5] gi|237691531|gb|EEP60585.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium yellowstonense SS-5] Length = 459 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 142/435 (32%), Positives = 231/435 (53%), Gaps = 35/435 (8%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 +++ P N K WI+ LETI +++ R+V + + S TK Sbjct: 54 IYIYTPDNIYKNWIETEILETI---------ETSANKVIGRNVKIHIISLKDKSSKKTKK 104 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 S + N ++ Q +S L+ ++ F I G++N+VA A ++ E Y Sbjct: 105 SKNSKNFEETDFY---QYLS------LNPKYTFDNLIVGNNNKVAFQACLAVTENLGKIY 155 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLFI+ VGLGKTHLL A + + +++Y TA+ F S + L Sbjct: 156 -----NPLFIYGDVGLGKTHLLHGTAYHVLAKNSTAKIIYTTADTFASELFSYLEKGMIL 210 Query: 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + R +DLLLIDD+QFL GK Q EF H+ N L KQ++ ++D+PPS+L ++ Sbjct: 211 EFRKKYREVDLLLIDDIQFLVGKERTQIEFYHIFNVLYSLGKQIILSSDQPPSKLNGIEK 270 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI--NEEVLMHVARTVTTSG 368 R+ SR G+ V + D L+ ++ I+ K+ +LN+ + +V++ +A+TV TS Sbjct: 271 RLISRFSSGLIVEITKPD-------LETKINITLKKMKELNVEFSRDVVLFIAKTVNTSV 323 Query: 369 RELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+G+ +L + +T ++A +L ++ E + + +E IQ+ V ++NI Sbjct: 324 RELEGSIKRLKAYSEIMGRPITLDVARTVLKDVLEVNEVQPLTVERIQKEVCNYFNIDIK 383 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 +LL N R + V RQ+AMYLSK +T S I R F +DHTT+L+A K+++M+E D Sbjct: 384 ELLGNSRNKKSVTARQIAMYLSKELTDESLSSIARYFHKKDHTTILNAANKIKEMMEKDR 443 Query: 488 TLKKEVELLK-RLIS 501 LK V+L+K +LI+ Sbjct: 444 KLKYTVDLIKDKLIT 458 >gi|322433660|ref|YP_004215872.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX9] gi|321161387|gb|ADW67092.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX9] Length = 492 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 127/349 (36%), Positives = 201/349 (57%), Gaps = 13/349 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ R+ F F+ GS N+ A AAQ++AE S Y NPLF++ VG+GKTHL+ Sbjct: 155 ASQLNPRYQFDAFVIGSGNQFAAAAAQAVAERPSKAY-----NPLFLYGGVGMGKTHLMH 209 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + +R P+ + Y++ E F +++R + +D RN+D+LLIDD+QFL GK Sbjct: 210 AIGHEVKRRMPHTSISYVSGEKFTNEMINSVRYDKMTTFRDKFRNVDVLLIDDIQFLAGK 269 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V A+DRPP EL + R+RSR + G+ + D E + Sbjct: 270 ERTQEEFFHTFNALHETMKQIVIASDRPPKELADFEDRLRSRFEWGLIADIQPPDLETKV 329 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL+ + E + +V + +A V T+ REL+GA +++ S + + + Sbjct: 330 AILQRK-----AEAESTTLPTDVALFIASNVRTNVRELEGALIRVIAWCSHHGVECSLPV 384 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L ++T + +K+ IE IQR VA+ + + +L R +V PRQ+AMYL+K M Sbjct: 385 AQQCLKQFIDT-QVRKITIEAIQRAVAEQFGMRVPELKQKNNSRQIVVPRQIAMYLAKQM 443 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIGR+FG + HTTV+H++ K+++ D L + + L +S Sbjct: 444 TEASLPEIGRQFGGKHHTTVMHSIAKIDEQRRADKDLNRTINKLMETLS 492 >gi|123965864|ref|YP_001010945.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9515] gi|166214691|sp|A2BVM7|DNAA_PROM5 RecName: Full=Chromosomal replication initiator protein DnaA gi|123200230|gb|ABM71838.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9515] Length = 463 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 151/481 (31%), Positives = 251/481 (52%), Gaps = 50/481 (10%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P NF W++ Y ETI K Sbjct: 7 IWAEVQQLLQKNLSKPSFETWIRPAKFNCFENGLLTLITPNNFTSDWLRKNYSETIEKAA 66 Query: 98 QEEHSRIQG--VEILVRS-------------VALPSVEKTASSPSITKLSPINTNISKSP 142 +E I G V+++ +S V+ S++ S S ++ + N KS Sbjct: 67 EE----ICGHNVKVIFKSENNVNNNSNIPDTVSQQSIKSQTRSISTSQGNNTNNRTKKS- 121 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 L+ R+VF F+ G ++R+A AA ++AE + NPLFI Sbjct: 122 -------------HSLNIRYVFKRFVVGPNSRMAHAAALAVAESPGREF-----NPLFIC 163 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAI + ++ P +V+Y++ E F +IR + K+ R++DL Sbjct: 164 GGVGLGKTHLMQAIGHYRVEIDPEAKVLYVSTETFSSDLIQSIRKDGMHVFKNKYRSVDL 223 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QFL+GK Q EF + N+L ++ KQ+V A+DRPPS++ L R+ SR G+ Sbjct: 224 LLIDDIQFLEGKEYTQEEFFNTFNALYEAGKQIVIASDRPPSQIPKLQERLISRFSMGLI 283 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + D E R +IL+ + E ++N+ +++ +A +++ REL+GAF + V Sbjct: 284 ADIQPPDIETRMAILQKK-----AEQERMNLPRDLVQFIAGRFSSNIRELEGAFTRAVAF 338 Query: 382 HSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 S P+ IA L + V T K I + V+ ++++ +L+S+ R + V Sbjct: 339 ASITGLPMTVQSIAPMLDPNSVGVVVTPKQVI----KKVSDFFSVTAEELVSSSRRKPVS 394 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+ MYL + T S P+IG FG +DHTTV++A+ +VEK L +D + +V+ +K L Sbjct: 395 QARQIGMYLMRQGTNLSLPKIGDEFGGKDHTTVMYAIEQVEKKLSSDPNVASQVQKIKDL 454 Query: 500 I 500 + Sbjct: 455 L 455 >gi|86142844|ref|ZP_01061283.1| chromosomal replication initiation protein [Leeuwenhoekiella blandensis MED217] gi|85830876|gb|EAQ49334.1| chromosomal replication initiation protein [Leeuwenhoekiella blandensis MED217] Length = 476 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 144/485 (29%), Positives = 261/485 (53%), Gaps = 24/485 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++++ S +++ + P Y +WF+ ++ + N + + VP+ F W++ Y+ Sbjct: 1 MSMTAQTVWDNCLSFIQDNITPQAYKTWFEPIRAVKLTDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETI-TKLFQE--EHSRIQGVEILVRSVA--LPSVEKTASS--PSITKLSPINTNI-SKSP 142 + + L +E EH+++ V + + P EK S+ P+ K ++ + +K+P Sbjct: 61 KLLKVSLTKELGEHAKLVYVIRMENTYGNKQPFTEKIPSTNRPNTMKSQEVDAPLKNKNP 120 Query: 143 IILGKQTISPV----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + I + S L+ + F F+EG SNR+A +A ++A + G T+ NP Sbjct: 121 ELKNPFVIPGIRNLEIESQLNPNYNFENFLEGDSNRLARSAGMAVA--NKPGGTS--FNP 176 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L I VGLGKTHL AI R P+ V+Y++AE F ++ +++ N + + Sbjct: 177 LLIFGGVGLGKTHLAHAIGVQIKDRYPDKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQ 236 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ID+L++DD+Q L GK Q F H+ N L + KQVV +D+ P +++ ++ R+ SR + Sbjct: 237 VIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVVLTSDKAPVDMQDIEQRLLSRFK 296 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+S L +E R SI+KN+L E P E+++ +A + T+ REL+GA Sbjct: 297 WGLSAELQSPGFETRVSIIKNKLYQDGVEMP-----EDIVEFLANNIKTNIRELEGAIIS 351 Query: 378 LVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+ SF + E+A +++ + V + +++ I+ IQ++V+ ++ + + L S R R Sbjct: 352 LIAHSSFNRKEINLELAKKIVDNYVKHTK-REVSIDYIQKVVSDYFQMDVDTLQSKTRKR 410 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + TD +K VE L Sbjct: 411 HIVQARQLAMFFAKKLTKASLASIGSQIGKRDHATVLHACKTVDNLSSTDKQFRKYVEDL 470 Query: 497 KRLIS 501 + ++ Sbjct: 471 NKKLT 475 >gi|298209110|ref|YP_003717289.1| chromosomal replication initiation protein [Croceibacter atlanticus HTCC2559] gi|83849037|gb|EAP86906.1| chromosomal replication initiation protein [Croceibacter atlanticus HTCC2559] Length = 475 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 145/486 (29%), Positives = 254/486 (52%), Gaps = 27/486 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ E+I+ S +K+ + P Y +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MQKTAETIWGNCLSFIKDNITPQAYKTWFEPIKAVKLTDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEK--TASSPSITKLSPINTNI-----SKSP- 142 + + +E + ++R ++ T S PS + + + SKSP Sbjct: 61 KLLKVALNKELGDTAKLVYVIRMENTYGNKQPFTESIPSSQRAQMQSQQVDVPTKSKSPE 120 Query: 143 -----IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 II G + + S L+ + F +F+EG SNR+A +A ++A + G T+ N Sbjct: 121 LKNPFIIPGIRNVK--IESQLNPNYNFESFLEGDSNRLARSAGMAVA--NKPGGTS--FN 174 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PL I VGLGKTHL AI + P V+Y++AE F ++ +++ N + Sbjct: 175 PLLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFY 234 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 + ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR Sbjct: 235 QIIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRF 294 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+S L D+E R +I+K++L E P E+++ +A + T+ REL+GA Sbjct: 295 KWGLSAELQHPDFETRIAIIKSKLYRDGVEMP-----EDIVEFLANNIKTNIRELEGAII 349 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 L+ SF +T E+A ++ + V + +++ I+ IQ++V ++ + L S R Sbjct: 350 SLIAHSSFNKKDITLELAKSIVDNYVKNTK-REVSIDYIQKVVGDYFQMDVETLRSKTRK 408 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V + TD +K VE Sbjct: 409 RHIVQARQLAMFFAKKLTKASLASIGSQIGKRDHATVLHACKTVNNLAATDKQFRKFVED 468 Query: 496 LKRLIS 501 L + ++ Sbjct: 469 LDKKLA 474 >gi|254526330|ref|ZP_05138382.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9202] gi|221537754|gb|EEE40207.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9202] Length = 464 Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 155/475 (32%), Positives = 250/475 (52%), Gaps = 37/475 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P F W++ Y +TI K Sbjct: 7 IWAEVQQSLQKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCQTIEKAA 66 Query: 98 QEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL---GKQTISP 152 +E I G V+++ +S E SS S K + ++ I L Q ISP Sbjct: 67 KE----ICGHDVKVVFKS------ETNISSDSTNKEN-LDEQIVNHKTKLFHNNNQDISP 115 Query: 153 VFGSP----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 S L+ R+VF F+ G ++R+A AA ++AE + NPLFI VGLG Sbjct: 116 KNRSKNPNGLNLRYVFKRFVVGPNSRLAHAAALAVAESPGREF-----NPLFICGGVGLG 170 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + ++ P +V Y++ E F S IR + ++D RN+DL+LIDD+ Sbjct: 171 KTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNVDLILIDDI 230 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL+GK Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ + Sbjct: 231 QFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMTADIQPP 290 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 D E R +IL+ + E ++++ +++ +A T++ REL+GAF + V S Sbjct: 291 DLETRTAILQKK-----AEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFASITGL 345 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 P+ IA L + V T I + V+ + +S ++L+S+ R + V + RQ+ Sbjct: 346 PMTVQSIAPMLDPNSVGVVVTPTQVI----KKVSDFFKVSTDELISSSRRKPVSQARQIG 401 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + T S P IG FG +DHTTV++A+ +VEK L TD + +V+ ++ L+ Sbjct: 402 MYLMRHGTDLSLPRIGDEFGGKDHTTVMYAIEQVEKKLSTDPNIASQVQKIRDLL 456 >gi|325685106|gb|EGD27237.1| DNA-directed DNA replication initiator protein [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 454 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 155/480 (32%), Positives = 253/480 (52%), Gaps = 43/480 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLK---FHSVLHNIVHLSVPTNFLKA-WIKNRY 89 + E + ++ ++++ Y +WF+ K F+ H +V +SV T K W +N Sbjct: 3 DLEKFWDSFNAEMRSEFNEVSYNAWFKNTKPVSFNKDTHELV-ISVQTPVAKGYWEQN-- 59 Query: 90 LETITKLFQEEHSRIQGVEI----LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 L Q ++ G++I +V++ PS E+ L P + Sbjct: 60 --ISANLIQSAYA-YAGIDIYPVFVVKNGPAPSSERM--------LEPQPQAKPEKARPQ 108 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 G++ + L+ ++ F FI+G N++A AA ++A+ Y NPLFI V Sbjct: 109 GREFTKDL---RLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFY-----NPLFIFGGV 160 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ R DLLL+ Sbjct: 161 GLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLLLV 220 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + Sbjct: 221 DDIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEI 280 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + E L I+E L +VA V T+ REL+GA LV + Sbjct: 281 TPPDLETRIAILRKKA-----ESEGLEIDESTLDYVASQVDTNIRELEGA---LVKVQAQ 332 Query: 385 APILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 A I +I A L+ L +++ ++I IQ +VA ++ S +L +RVR +V Sbjct: 333 ATIQKQDINIGLARSALADLKLVQKSRGLQISKIQEVVANYFQTSVPELKGKKRVRQIVI 392 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYLS+ +T S P+IG+ FG +DHTTV+HA K+ + ++TD +K V L++++ Sbjct: 393 PRQIAMYLSRELTDASLPKIGQEFGGKDHTTVMHACDKIARQIKTDTEIKSAVSDLRQML 452 >gi|120552945|ref|YP_957296.1| chromosomal replication initiation protein [Marinobacter aquaeolei VT8] gi|166214680|sp|A1TWJ0|DNAA_MARAV RecName: Full=Chromosomal replication initiator protein DnaA gi|120322794|gb|ABM17109.1| chromosomal replication initiator protein DnaA [Marinobacter aquaeolei VT8] Length = 487 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 158/511 (30%), Positives = 251/511 (49%), Gaps = 70/511 (13%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 +CLEV L+++ + +W + L+ ++ L P F+ W+ + Sbjct: 8 QCLEV------------LRDEFPAQQFNTWLRPLQSDHREGQLM-LFAPNRFVMDWVNEK 54 Query: 89 YLETITKLFQEEH------------SRIQGVEILVRSVALPSVEKTA------------- 123 YL I ++ ++ + S + + +VRS P V + Sbjct: 55 YLRRIEEVLKDLNGGQAPRVMMKVGSAPKPTDPVVRSEVAPPVRVSEETEQTVTEEERSV 114 Query: 124 ------SSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 S+P + P+ + F L+ F F TF+EG SN++A Sbjct: 115 AATVADSAPRAMSAPAPKAQAERRPVQVEGDIKHQSF---LNETFTFDTFVEGKSNQLAR 171 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 A+ +AE Y NPLF++ VGLGKTHL+ AI N ++R P +V YL +E F Sbjct: 172 AASMQVAENPGGAY-----NPLFLYGGVGLGKTHLMHAIGNEIVRRNPRAKVAYLRSERF 226 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 + A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 227 VADMVKALQLNAINEFKRYYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVIV 286 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 DR P E+ ++ R++SR G++V + + E R +IL + + E + ++ E Sbjct: 287 TCDRFPKEISDMEERLKSRFGWGLTVMVEPPELETRVAIL-----MKKAEQANVKLSSEA 341 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFA------PILTAEIADELLSHLVNTGETKKMR 410 +A+ + ++ REL+GA ++ F P + + D L H K++ Sbjct: 342 AFFIAQKIRSNVRELEGALRLVIANAHFTGSEITPPFIRESLKDLLALH------EKQVS 395 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I++IQR VA++Y I DLLS RR RTV RPRQVAM L+K +T S PEIG FG RDHT Sbjct: 396 IDNIQRTVAEYYKIKVADLLSKRRTRTVTRPRQVAMSLAKELTNHSLPEIGDAFGGRDHT 455 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TVLHA +K+ ++ ETD ++++ + RL++ Sbjct: 456 TVLHACKKIVELQETDPGIREDYQNFMRLLT 486 >gi|328945174|gb|EGG39329.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1087] Length = 450 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 145/435 (33%), Positives = 233/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 ++ L P L W +N +T F+ + +I G I + + + +SP I+ Sbjct: 42 VIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNIDTPKSAVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ E+ + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----ENLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|296134505|ref|YP_003641747.1| chromosomal replication initiator protein DnaA [Thiomonas intermedia K12] gi|295794627|gb|ADG29417.1| chromosomal replication initiator protein DnaA [Thiomonas intermedia K12] Length = 484 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/327 (38%), Positives = 190/327 (58%), Gaps = 15/327 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F T + G +N++A AA +AE Y NPLFI+ VGLGKTHL+ A Sbjct: 147 SRLNPMLSFETLVTGKANQLARAAAIQVAENPGRSY-----NPLFIYGGVGLGKTHLMHA 201 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + NA + +QP R+ YL AE F+ A + K ++DLLLIDD+QF GK Sbjct: 202 VGNALLAQQPGARIRYLQAEQFVSEVVRAYQRKAFEEFKRYYHSLDLLLIDDVQFFAGKD 261 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ Q++ +D P EL +D R+ SR G++V + + EMR + Sbjct: 262 KTQEEFFYAFEALITKRSQIILTSDTYPKELREMDQRLVSRFDSGLTVAIEPPELEMRVA 321 Query: 335 ILKNRLAISQKEDPKL-NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 IL +K D +L ++ EEV VA+ V ++ REL+GA +++ F+ ++ + Sbjct: 322 IL------LRKADAELAHLPEEVAFFVAKNVRSNVRELEGALRKILAYARFSGQDVSIGL 375 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ + +++ +E+IQ+ VA Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 376 AKEALKDLLSL-QNRQVSVENIQKTVADFYKIKVADMYSKKRPASIARPRQIAMYLAKEL 434 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 435 THKSLPEIGELFGGRDHTTVLHAVRKI 461 >gi|298369733|ref|ZP_06981050.1| DNA replication initiator protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282290|gb|EFI23778.1| DNA replication initiator protein [Neisseria sp. oral taxon 014 str. F0314] Length = 504 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/342 (37%), Positives = 197/342 (57%), Gaps = 15/342 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L S + F T +EG NR+A AAQSIAE Y NP F++ S GLGKTHL+QAI Sbjct: 169 LSSDYTFETLVEGKGNRIAAAAAQSIAENPGQSY-----NPFFLYGSTGLGKTHLVQAIG 223 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F SA+R N K + DLL+IDD+QF++GK Sbjct: 224 NELLKNRPDAKVRYMHSDDYIRSFMSAVRTNSYDVFKQQYKQYDLLIIDDIQFIKGKDRT 283 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 284 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEDMDDRLKSRFSWGLTLELEPPELEMRVAIL 343 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + + E +++ +E +A + ++ REL+GAFN++ F PI ++A Sbjct: 344 QKK-----AESSGISLTDEAAFFIANLIRSNVRELEGAFNRVSASSRFMNKPI-DIDLAR 397 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L ++ + K + + I AK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 398 DALQDIIAV-KHKVITADIIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELTN 456 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S P IG FG RDHTTV+H V+ V K+ E D L ++ E L Sbjct: 457 LSLPSIGDAFGGRDHTTVMHGVKAVAKLREDDPELAQDYEKL 498 >gi|294338441|emb|CAZ86767.1| Chromosomal replication initiator protein dnaA [Thiomonas sp. 3As] Length = 484 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/327 (38%), Positives = 190/327 (58%), Gaps = 15/327 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F T + G +N++A AA +AE Y NPLFI+ VGLGKTHL+ A Sbjct: 147 SRLNPMLSFETLVTGKANQLARAAAIQVAENPGRSY-----NPLFIYGGVGLGKTHLMHA 201 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + NA + +QP R+ YL AE F+ A + K ++DLLLIDD+QF GK Sbjct: 202 VGNALLAQQPGARIRYLQAEQFVSEVVRAYQRKAFEEFKRYYHSLDLLLIDDVQFFAGKD 261 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ Q++ +D P EL +D R+ SR G++V + + EMR + Sbjct: 262 KTQEEFFYAFEALITKRSQIILTSDTYPKELREMDQRLVSRFDSGLTVAIEPPELEMRVA 321 Query: 335 ILKNRLAISQKEDPKL-NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 IL +K D +L ++ EEV VA+ V ++ REL+GA +++ F+ ++ + Sbjct: 322 IL------LRKADAELAHLPEEVAFFVAKNVRSNVRELEGALRKILAYARFSGQDVSIGL 375 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ + +++ +E+IQ+ VA Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 376 AKEALKDLLSL-QNRQVSVENIQKTVADFYKIKVADMYSKKRPASIARPRQIAMYLAKEL 434 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 435 THKSLPEIGELFGGRDHTTVLHAVRKI 461 >gi|159903109|ref|YP_001550453.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9211] gi|226735832|sp|A9BEI9|DNAA_PROM4 RecName: Full=Chromosomal replication initiator protein DnaA gi|159888285|gb|ABX08499.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9211] Length = 454 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/476 (29%), Positives = 237/476 (49%), Gaps = 49/476 (10%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V L+ + Y +W F + + L +F AW+ N Y Sbjct: 7 VWVKVQQSLRGNLSKPSYETWISPTTFCNFERGELTLLAANDFSSAWLTNNY-------- 58 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 S A+ + S+ + + +I KS L + P F P Sbjct: 59 ---------------SRAIEEAAEAVIGESVKVIVKVKDDIQKSEASLPPRISIPAFHPP 103 Query: 158 LDS-----------RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 DS R+VF+ F+ G ++R+A AA S+AE + + NPLFI VG Sbjct: 104 GDSKKTDSKPALNLRYVFNRFVVGPNSRIAHAAAMSVAEAPAKEF-----NPLFICGGVG 158 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QAI + ++ P +V Y++ E F AIR + + +D R DL+L+D Sbjct: 159 LGKTHLMQAIGHYRLEIDPGAKVSYVSTETFTNDLIVAIRQDGMQSFRDKYRAADLILVD 218 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL+GK Q EF H N+L +S Q+V A+DRPP+++ L R+ SR G+ + Sbjct: 219 DIQFLEGKEYTQEEFFHTFNALHESGTQIVLASDRPPNQIPRLQERLISRFSMGLIADVQ 278 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E R +IL+ + E ++ + +++ +A T + REL+GA + V +FA Sbjct: 279 APDLETRMAILQKK-----AEQDRVRLPRDLIQFIAGRFTLNIRELEGALTRAV---AFA 330 Query: 386 PILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 I + E ++ +++ G+ ++ + + V++ + ++ +++ S+ R R V + RQV Sbjct: 331 SITGLPMTVESIAPMLDPNGQGVEVTPKQVMEKVSEVFAVTSDEMCSSSRRRPVSQARQV 390 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + T S P IG FG +DHTTV++A+ ++EK L TD L +V+ +K L+ Sbjct: 391 GMYLMRHGTDLSLPRIGEVFGGKDHTTVMYAIEQIEKKLSTDPQLASQVQKVKDLL 446 >gi|33861122|ref|NP_892683.1| chromosomal replication initiation protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|61222626|sp|P0A3A2|DNAA_PROMP RecName: Full=Chromosomal replication initiator protein DnaA gi|61222628|sp|P0A3A3|DNAA_PROS9 RecName: Full=Chromosomal replication initiator protein DnaA gi|5616249|gb|AAD45692.1|AF158628_2 DnaA [Prochlorococcus marinus subsp. pastoris str. PCC 9511] gi|33639854|emb|CAE19024.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 463 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 150/473 (31%), Positives = 253/473 (53%), Gaps = 34/473 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P NF W++ Y ETI K Sbjct: 7 IWAEVQQLLQKNLSKPSFETWIRPAKFNCFENGLLTLITPNNFTSDWLRKNYSETIEKAA 66 Query: 98 QEEHSRIQG--VEILVRSVALPSVEKTASSPSI-----TKLSPINTNISKSPIILGKQTI 150 +E I G V+++ +S + +S ++ + N S + I K++ Sbjct: 67 EE----ICGHNVKVVFKSETNINNNSNSSDSVSQQNINSQSKSFSINQSNNLINRSKKSH 122 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L++R+VF F+ G ++R+A AA ++AE + NPLFI VGLGKT Sbjct: 123 S------LNTRYVFKRFVVGPNSRMAHAAALAVAESPGREF-----NPLFICGGVGLGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QA+ + ++ P+ +V+Y++ E F +IR + K+ R++DLLLIDD+QF Sbjct: 172 HLMQAVGHYRVEIDPDAKVLYVSTETFSSDLIQSIRKDGMHAFKNKYRSVDLLLIDDIQF 231 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+GK Q EF + N+L ++ KQ+V A+DRPPS++ L R+ SR G+ + D Sbjct: 232 LEGKEYTQEEFFNTFNALYEAGKQIVIASDRPPSQIPKLQERLISRFSMGLIADIQPPDI 291 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PI 387 E R +IL+ + E ++N+ +++ +A +++ REL+GAF + V S P+ Sbjct: 292 ETRMAILQKK-----AEQERMNLPRDLIQFIAGRFSSNIRELEGAFTRAVAFASITGLPM 346 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 IA L + V T K I + V+ + +S +L+S+ R + V + RQ+ MY Sbjct: 347 TVQSIAPMLDPNSVGVVVTPKQVI----KKVSDFFEVSAEELVSSSRRKPVSQARQIGMY 402 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L + T S P+IG FG +DHTTV++A+ +VEK L +D + +V+ +K L+ Sbjct: 403 LMRQGTDLSLPKIGDEFGGKDHTTVMYAIEQVEKKLSSDPNVASQVQKIKDLL 455 >gi|322392425|ref|ZP_08065885.1| DNA-directed DNA replication initiator protein [Streptococcus peroris ATCC 700780] gi|321144417|gb|EFX39818.1| DNA-directed DNA replication initiator protein [Streptococcus peroris ATCC 700780] Length = 452 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 133/361 (36%), Positives = 204/361 (56%), Gaps = 17/361 (4%) Query: 147 KQTIS--PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 +QTI P + L+ + F F++G N A +AA +++E + Y NPLFI+ Sbjct: 101 EQTIKSIPYSETGLNKNYTFDNFVQGDGNIWAKSAALAVSEDLALTY-----NPLFIYGG 155 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL AI N +K P+ RV Y+ AE F+ F +R K + RN+DLLL Sbjct: 156 PGLGKTHLLNAIGNEILKNIPSARVKYIPAESFINDFLDHLRLGEMEKFKKTYRNLDLLL 215 Query: 265 IDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 IDD+Q L GK + Q EF + N L + KQ+V +DR P +LE ++ R+ +R G++ Sbjct: 216 IDDIQSLSGKKVATQEEFFNTFNDLHNKQKQIVLTSDRSPKQLEGMEERLVTRFSWGLTQ 275 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVF 380 + D+E R +IL+ S+ E+ N + L ++A ++ REL+GA N L+ Sbjct: 276 AITPPDFETRVAILQ-----SKTENLDYNFQSDTLEYLAGQFDSNVRELEGAINDITLIA 330 Query: 381 RHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 R +T +IA E + + + + + IE IQ V Y +S +L RRV+ +V Sbjct: 331 RVKKITDITIDIAAEAIRARKQDISQMLVIPIEKIQTEVGNFYGVSVKELKGTRRVQNIV 390 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RQVAMYL++ +T S P+IG+ FG +DHTTV+HA K++ ++E D L+ E+E +K+ Sbjct: 391 LARQVAMYLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIEEDNNLRLEIEAIKKK 450 Query: 500 I 500 I Sbjct: 451 I 451 >gi|296110744|ref|YP_003621125.1| chromosomal replication initiation protein DnaA [Leuconostoc kimchii IMSNU 11154] gi|295832275|gb|ADG40156.1| chromosomal replication initiation protein DnaA [Leuconostoc kimchii IMSNU 11154] Length = 448 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 146/463 (31%), Positives = 236/463 (50%), Gaps = 46/463 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP----TNFLKAWIKNR 88 + E ++ V ++ ++GP + ++ + L ++ + + L VP TN + W K+ Sbjct: 5 ITQEELWNQVKAKFYQEIGPVSFDTYIEPLIPVTLTDSSIILEVPIDESTNIIDKWNKSY 64 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + S +Q + P + + P T + + Sbjct: 65 AM-----------SFVQYAMEIAEGFIKPELRVADALPKSTAIQ--------------TE 99 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T++ S L+ F F F+ G+ N A A+++AE Y NP I+ VGLG Sbjct: 100 TLTFTRESDLNEAFTFDKFVVGTGNENAYAIARAVAEDPGKVY-----NPYLIYGGVGLG 154 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLID 266 KTHL+QAI NA K P+ R+ Y TAE F+ F ++R + K R +DLLLID Sbjct: 155 KTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRTVDLLLID 214 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK +Q EF + N L + KQ++ +D+ P+E+ L R+ SR + G+S+ + Sbjct: 215 DIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQ 274 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHS 383 D R +ILKN LA E L+I +VL +A + ++ R L+G F++ + R+ Sbjct: 275 KPDLPTRVAILKN-LA----ETDNLDIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRYR 329 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 P T E A ++L L N + K+ ++ IQ++VA +Y + +DL S R + +V R Sbjct: 330 NKPA-TKETAQKILGDL-NINQGFKVTVDRIQQVVADYYMQTIDDLKSTSRKKDLVTARH 387 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 VAMYL++ +T S P+IGR FG RDH++VLHA K+ + E+D Sbjct: 388 VAMYLTRTLTNESLPDIGRSFGGRDHSSVLHATNKITEKAESD 430 >gi|330822654|ref|YP_004385957.1| chromosomal replication initiator protein dnaA [Alicycliphilus denitrificans K601] gi|329308026|gb|AEB82441.1| Chromosomal replication initiator protein dnaA [Alicycliphilus denitrificans K601] Length = 473 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 143/436 (32%), Positives = 231/436 (52%), Gaps = 27/436 (6%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 V L V F WI+ +Y I+ L +E + + +E+ AL E A T + Sbjct: 56 VTLLVANRFKLDWIRAQYAGRISALLEELYGQPVTLEL-----ALAQRESVAR----TYV 106 Query: 132 SPINTNISKSPIILGKQTISPV-----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 P+ +I + F + L+ F T +EG++NR+A +AA +A Sbjct: 107 RPVPASIEAPAANAPAGAAAEEPPAGAFRTRLNPALTFETLVEGTANRMARSAAMHVAGS 166 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 H Y NPLFI+ VGLGKTHL+ A+ N + +P+ +V+Y+ AE F+ + + Sbjct: 167 PGHLY-----NPLFIYGGVGLGKTHLVHAVGNKLLADRPDAKVLYIHAEQFVSDVVKSYQ 221 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K+ ++DLLLIDD+QF K Q EF + +LL +V +D P L Sbjct: 222 RRTFDDFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGL 281 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ++ R+ SR G++V + + EMR +IL N+ E P EEV VA+ V Sbjct: 282 ANIHERLVSRFDSGLTVAIEPPELEMRVAILINKARAEHAEMP-----EEVAFFVAKNVR 336 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y I Sbjct: 337 SNVRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSI-QNRQISVENIQKTVADYYKI 395 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 396 KVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIGAERQ 455 Query: 485 TDITLKKEVELLKRLI 500 L +++ +L++ + Sbjct: 456 QLTELNQQLHVLEQTL 471 >gi|313893529|ref|ZP_07827099.1| chromosomal replication initiator protein DnaA [Veillonella sp. oral taxon 158 str. F0412] gi|313441972|gb|EFR60394.1| chromosomal replication initiator protein DnaA [Veillonella sp. oral taxon 158 str. F0412] Length = 525 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 142/439 (32%), Positives = 231/439 (52%), Gaps = 35/439 (7%) Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSV-EKTASS----------PSITKLSPINTNIS 139 E+I F +E S I ++ + LP V E+ A P +P NI Sbjct: 91 ESIDTTFVDE-SLIDDAPVVAPPMPLPPVVEEKAQQDEFYTPVYQEPVYIDRTPAPVNIP 149 Query: 140 KSPIILGKQTI---SPVFGS---PLD-------SRFVFSTFIEGSSNRVALTAAQSIAEV 186 P++ +T+ +P S P+D + F ++ G++NR+ AAQ++AE Sbjct: 150 DEPMVAPSKTVETTTPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEF 209 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLFI+ GLGKTHL+ AI NA + P+++V+ +T+E FM F ++ Sbjct: 210 PGGDY-----NPLFIYGPSGLGKTHLMHAIGNAIKEHHPHMKVMSITSENFMNIFVETLQ 264 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 N +++ RNID+L+IDD+QFL+ + + E + N LL++ KQ+V +D P+++ Sbjct: 265 RNQGKLFRNTFRNIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDM 324 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 E + R+RSR Q G + D E R +I ++ L K++ + I+ + + +VA + Sbjct: 325 EQFEDRLRSRFQAGYIATMENPDLETRIAIFRSLLEREYKKNRVIRIDNDSINYVALQFS 384 Query: 366 TSGRELDGAFNQLVFRHSFAPILTA---EIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + R L GAF +L+ S L + E + L+ LV+T E + IE IQ V+ ++ Sbjct: 385 ENVRVLQGAFTKLIGTASIDQRLESIDLEYTKQALAGLVHTEEVNMVNIESIQNFVSSYF 444 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 NI + DLL +R PRQ+AMYL + M S+P+I F RDHTT+LHA K+ K Sbjct: 445 NIKKQDLLGKKRKAQFAFPRQIAMYLCRDMINESYPQIAAAFS-RDHTTILHAYDKITKE 503 Query: 483 LETDITLKKEVELLKRLIS 501 +E + K+ V +K+ ++ Sbjct: 504 IEKNEETKRIVGEIKQKLT 522 >gi|329121620|ref|ZP_08250241.1| DNA-directed DNA replication initiator protein DnaA [Dialister micraerophilus DSM 19965] gi|327468775|gb|EGF14252.1| DNA-directed DNA replication initiator protein DnaA [Dialister micraerophilus DSM 19965] Length = 494 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 152/483 (31%), Positives = 257/483 (53%), Gaps = 44/483 (9%) Query: 52 PDVYASWFQRLKFHSVLHNIVHLSVPTN--FLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 P Y +++++ F S+L L++ T +L +WI+ Y + + E+ ++ + I Sbjct: 19 PQYYEMFYKKI-FPSLLDE-KELTIITQDPYLVSWIEALYKTKLETIISEKLNKPMKIII 76 Query: 110 LVR-------SVALPSVEKTASSPSITKLSPINT------NISKSP--IIL------GKQ 148 L + S +P + P + ++ P N NI K+ I+L KQ Sbjct: 77 LSKEDHEEKKSEKIPDFMEEEKLPLMDEVKPYNPPENILINIPKNSQDIVLPSIQNYSKQ 136 Query: 149 TI---SPVFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVD-SHGYTTVRLNPLFIH 202 T PV+ SP +++ F TF+ G+ N +A +A S+A++ + ++NPLFI+ Sbjct: 137 TKIKEKPVYKSPNPINTEHTFETFVHGNCNEMAFQSALSVAQMAVNMEEMDKKMNPLFIY 196 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL AI N + P+L +++++E F ++I+ N ++ RN D Sbjct: 197 GPSGLGKTHLLHAICNYIRENAPHLSYIFVSSETFTNELIASIKSNSMPKFREKYRNPDY 256 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF K + E + N+L D+ K ++ +DR PS++E L+ RI++R G+ Sbjct: 257 LLIDDVQFFGSKNSSKMEIFNTFNTLFDNKKHIILTSDRTPSDIEELEDRIQTRFSSGLI 316 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 VP+ DYE+ IL+ R ++KE +NI EV+ ++A + T+ RELDGAFN+LV Sbjct: 317 VPISPPDYEICSIILEKR---AEKEG--INIPSEVINYIAEHINTNVRELDGAFNKLV-- 369 Query: 382 HSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 ++A + +T E A E L + + +++ E I V +N+ + +LL R + Sbjct: 370 -TYAKVKKKEITLEFAKETLKDQIPLEQNREITPEIIINTVCNKFNVKKENLLGKGRPKN 428 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V PRQ+AMYL + SFP + F +DH+T+L+A +VEK + D KK +E L Sbjct: 429 IVIPRQIAMYLCRKELNLSFPILRDIFKRKDHSTILYACERVEKDIAKDNETKKIIEELS 488 Query: 498 RLI 500 ++ Sbjct: 489 NML 491 >gi|261363925|ref|ZP_05976808.1| DNA replication initiator protein [Neisseria mucosa ATCC 25996] gi|288567937|gb|EFC89497.1| DNA replication initiator protein [Neisseria mucosa ATCC 25996] Length = 516 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE GY NP F++ S GLGKTHL+QAI Sbjct: 180 LSRDYTFDTLVEGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIG 234 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 294 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 295 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 354 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + VA + ++ REL+GAFN++ F P++ ++A Sbjct: 355 QKK-----AEAAGISIEDEAALFVANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 409 Query: 395 ELLSHLVNTGETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ D I AK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 410 TALQDII--AEKHKIITADTIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELT 467 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 468 TLSLPSIGDAFGGRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILI 514 >gi|157412981|ref|YP_001483847.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9215] gi|167016903|sp|A8G3T0|DNAA_PROM2 RecName: Full=Chromosomal replication initiator protein DnaA gi|157387556|gb|ABV50261.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9215] Length = 464 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 155/475 (32%), Positives = 250/475 (52%), Gaps = 37/475 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P F W++ Y +TI K Sbjct: 7 IWAEVQQSLQKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCQTIEKAA 66 Query: 98 QEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL---GKQTISP 152 +E I G V+++ +S E SS SI K + ++ I L Q ISP Sbjct: 67 KE----ICGHDVKVVFKS------ETNISSDSINKEN-LDEQIVNHKTKLFHNNNQDISP 115 Query: 153 VFGSP----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 S L+ R+VF F+ G ++R+A AA ++AE + NPLFI VGLG Sbjct: 116 KNRSKNPNGLNLRYVFKRFVVGPNSRLAHAAALAVAESPGREF-----NPLFICGGVGLG 170 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + ++ P +V Y++ E F S IR + ++D R +DL+LIDD+ Sbjct: 171 KTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRKVDLILIDDI 230 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL+GK Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ + Sbjct: 231 QFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMTADIQPP 290 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 D E R +IL+ + E ++++ +++ +A T++ REL+GAF + V S Sbjct: 291 DLETRTAILQKK-----AEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFASITGL 345 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 P+ IA L + V T I + V+ + +S ++L+S+ R + V + RQ+ Sbjct: 346 PMTVQSIAPMLDPNSVGVVVTPTQVI----KKVSDFFKVSTDELISSSRRKPVSQARQIG 401 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + T S P IG FG +DHTTV++A+ +VEK L TD + +V+ ++ L+ Sbjct: 402 MYLMRHGTDLSLPRIGDEFGGKDHTTVMYAIEQVEKKLSTDPNIASQVQKIRDLL 456 >gi|255066616|ref|ZP_05318471.1| DNA replication initiator protein [Neisseria sicca ATCC 29256] gi|255049200|gb|EET44664.1| DNA replication initiator protein [Neisseria sicca ATCC 29256] Length = 516 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 131/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE GY NP F++ S GLGKTHL+QAI Sbjct: 180 LSRDYTFDTLVEGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIG 234 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 294 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 295 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 354 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + VA + ++ REL+GAFN++ F P++ ++A Sbjct: 355 QKK-----AEAAGISIEDEAALFVANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 409 Query: 395 ELLSHLVNTGETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ D I AK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 410 TALQDII--AEKHKIITADTIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELT 467 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 468 TLSLPSIGDAFGGRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILI 514 >gi|282848766|ref|ZP_06258161.1| chromosomal replication initiator protein DnaA [Veillonella parvula ATCC 17745] gi|282581552|gb|EFB86940.1| chromosomal replication initiator protein DnaA [Veillonella parvula ATCC 17745] Length = 524 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 200/350 (57%), Gaps = 10/350 (2%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ A Sbjct: 178 SNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDY-----NPLFIYGPSGLGKTHLMHA 232 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I NA + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + Sbjct: 233 IGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESRE 292 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 + E + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R + Sbjct: 293 STKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIA 352 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA---E 391 I ++ L K++ + I+ + + +VA + + R L GAF +L+ S L + E Sbjct: 353 IFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLE 412 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQ+AMYL + Sbjct: 413 YTKHALAGLVHTEEVNMVNIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRD 472 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M S+P+I F RDHTT+LHA K+ K +E + K+ VE +K+ ++ Sbjct: 473 MINESYPQIAAAFS-RDHTTILHAYDKITKEIEKNEETKRIVEEIKQKLT 521 >gi|326802615|ref|YP_004320433.1| chromosomal replication initiator protein DnaA [Aerococcus urinae ACS-120-V-Col10a] gi|326650687|gb|AEA00870.1| chromosomal replication initiator protein DnaA [Aerococcus urinae ACS-120-V-Col10a] Length = 450 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 138/471 (29%), Positives = 252/471 (53%), Gaps = 31/471 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ +VS + + + +W LK + H+++++ + K I++ Y+ + Sbjct: 4 LQELWQVVSEYFREHLTKGSFDTWILGLKPLRMDHDVLYIEAVSQLHKKHIESNYMMQLQ 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ + R +EI +++ + + P N ++P + Sbjct: 64 QVIYDYLGREIRIEI--------TLDNQQAGSNHLDFGPA-ANPGQAP----ADNRTANR 110 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ ++ F F+ G N++A AA ++AE Y NPLF + VGLGKTHL+Q Sbjct: 111 HSDLNPKYTFENFVVGEGNKMAHAAALAVAEGPGRDY-----NPLFFYGGVGLGKTHLMQ 165 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ P+ V Y+T+E F F AIR N + + R++D+LL+DD+QF+ K Sbjct: 166 AIGHEVLRTHPDAIVKYVTSETFTNDFIEAIRTNTMPDFHQAYRHVDMLLVDDIQFIGNK 225 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ K +V +DR S++ L+ R+ SR + G+S + D E R Sbjct: 226 QSTQEEFFHTFNALYNNNKHIVLTSDRDASQIPELEDRLVSRFKQGLSTDITPPDLETRI 285 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LT 389 +IL+N+ ++ ++I +E L ++A + T+ REL+GA + ++A + L+ Sbjct: 286 AILRNKAKVN-----GIDIPDETLSYIAGQIDTNIRELEGALTSV---QAYAVMNQEELS 337 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A LS+ + K I +IQ VA +++++ DL +R R +V PRQ+AM+LS Sbjct: 338 PDVAARALSNYRDANTKKVPSIAEIQETVADYFDLTVADLKGKKRKRDIVVPRQIAMFLS 397 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTVLHA K+ + +++ +K+ VE ++ L+ Sbjct: 398 REITDASLPKIGQEFGGKDHTTVLHAHEKISEAMKSATEIKENVESIQNLL 448 >gi|213622042|ref|ZP_03374825.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 309 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/307 (39%), Positives = 187/307 (60%), Gaps = 8/307 (2%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K Sbjct: 8 NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRY 67 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR Sbjct: 68 YRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSR 127 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 G++V + + E R +IL + + ++ + + EV +A+ + ++ REL+GA Sbjct: 128 FGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGAL 182 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 N+++ +F +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR Sbjct: 183 NRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRR 241 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ Sbjct: 242 SRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFS 301 Query: 495 LLKRLIS 501 L R +S Sbjct: 302 NLIRTLS 308 >gi|78778950|ref|YP_397062.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9312] gi|123755112|sp|Q31BW9|DNAA_PROM9 RecName: Full=Chromosomal replication initiator protein DnaA gi|78712449|gb|ABB49626.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9312] Length = 464 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 151/481 (31%), Positives = 243/481 (50%), Gaps = 49/481 (10%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P F W++ Y ETI K Sbjct: 7 IWAEVQKSLQKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCETIEKTA 66 Query: 98 QEEHSRIQGVEILV---------------RSVALPSVEKTASSPSITKLSPINTNISKSP 142 +E I G ++ V ++ V+ S S + N SK P Sbjct: 67 KE----ICGYDVKVIFKSETNINSYLTNKENLDEKKVDHKTKSFSNNSQDISSKNRSKKP 122 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ R+VF F+ G ++R+A AA ++AE + NPLFI Sbjct: 123 -------------NGLNLRYVFKRFVVGPNSRLAHAAALAVAESPGREF-----NPLFIC 164 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAI + ++ P +V Y++ E F S IR + ++D RN+DL Sbjct: 165 GGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNVDL 224 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 +LIDD+QFL+GK Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ Sbjct: 225 ILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMT 284 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + D E R +IL+ + E ++N+ +++ +A T++ REL+GAF + V Sbjct: 285 ADIQPPDLETRTAILQKK-----AEQERMNLPRDLIQFIAGRFTSNIRELEGAFTRAVAF 339 Query: 382 HSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 S P+ IA L + V T K I V+ + +S ++L+S+ R + V Sbjct: 340 ASITGLPMTVQSIAPMLDPNSVGVVVTPKQVINK----VSDFFKVSTDELISSSRRKPVS 395 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+ MYL + T S P IG FG +DHTTV++A+ +VEK L D + +V+ ++ L Sbjct: 396 QARQIGMYLMRQGTDLSLPRIGDEFGGKDHTTVMYAIEQVEKKLSIDPNIASQVQKIRDL 455 Query: 500 I 500 + Sbjct: 456 L 456 >gi|124265194|ref|YP_001019198.1| chromosomal replication initiation protein [Methylibium petroleiphilum PM1] gi|167016902|sp|A2SBM4|DNAA_METPP RecName: Full=Chromosomal replication initiator protein DnaA gi|124257969|gb|ABM92963.1| chromosomal replication initiator protein [Methylibium petroleiphilum PM1] Length = 467 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 241/477 (50%), Gaps = 30/477 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN----IVHLSVPTNFLKAWIKNRYLETI 93 +++ RL ++ + +W + L ++ + L VP F WI+N+Y I Sbjct: 5 VWSQGCERLATELPEQQFNTWIRPLPAAELVDRGDTAVATLRVPNRFKLDWIRNQYAARI 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALP-----SVEKTASSPSITKL---SPINTNISKSPIIL 145 + + + +++ + + P ++ P +P ++N Sbjct: 65 ESVLSDLAGKPVRLDLQLAAREAPPRPSSDAPRSNGHPQAAGQWLGAPSSSNAGAY---- 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 Q +P L++ F T + G +N++A TAA +A G V NPLFI+ V Sbjct: 121 -TQASAPTPTHRLNTALTFDTLVPGRANQMARTAALHVA-----GAPGVMYNPLFIYGGV 174 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ A+ NA ++ +P+ R++YL AE F+ + LK ++DLLLI Sbjct: 175 GLGKTHLIHAVGNALLRDKPDARILYLHAEQFITDVVKNYQRKTFDELKAKYHSLDLLLI 234 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF GK Q EF + +LL ++ +D P L +D R+ SR G++V + Sbjct: 235 DDVQFFAGKERTQEEFFNAFEALLAKRAHIIMTSDTYPKGLADIDERLTSRFDAGLTVAI 294 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + EMR +IL + + P E+V VA+ V + REL+GA +++ F Sbjct: 295 EPPELEMRVAILMKKSDVEGTPMP-----EDVAFFVAKNVRANVRELEGALRKVLAYARF 349 Query: 385 A-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + +A E L L++ + +++ +E+IQ+ VA Y I D+ S +R ++ RPRQ Sbjct: 350 SQKDINIALAREALKDLLSI-QNRQVGVENIQKTVADFYKIKVADMYSKKRPASIARPRQ 408 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 409 IAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIGGERGKNTELNQQLHVLEQTL 465 >gi|227539247|ref|ZP_03969296.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33300] gi|300770720|ref|ZP_07080599.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33861] gi|227240929|gb|EEI90944.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33300] gi|300763196|gb|EFK60013.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33861] Length = 475 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 145/486 (29%), Positives = 254/486 (52%), Gaps = 31/486 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY- 89 +E S++ +K+ + + +WF+ +K + N++ + VP+ F W++ Y Sbjct: 1 MEKTYTSVWNSCLQIIKDNIPAQSFKTWFEPVKAVKLDENVLTIQVPSLFFYEWLEEHYV 60 Query: 90 --LETITKLFQEEHSRIQGVEILVRS-------VALPSVEKTASSPSITKLSPINTNIS- 139 L K F E R++ ++ +S +PS A + P+N N + Sbjct: 61 GILRKTVKKFLGEQGRLEYNIVVEKSSTNIPYTTNIPSNGNGAEGKRQSIPVPVNLNKNI 120 Query: 140 KSPII---LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 K+P + L K + P L+ + F FIEG NR+A +A ++A + G T+ Sbjct: 121 KNPFVIPGLKKLQVDP----QLNQHYTFDNFIEGECNRLARSAGFAVA--NKPGGTS--F 172 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL ++ VGLGKTHL QAI N + P+ V+Y++ E F +F ++++N + + Sbjct: 173 NPLMLYGDVGLGKTHLSQAIGNEIKRNLPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNF 232 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + +D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ SR Sbjct: 233 YQAMDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSR 292 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+S + + D E R +ILK ++ E P E V+ +VA + S REL+GA Sbjct: 293 FKWGLSADIQVPDLETRMAILKKKMYSDGIELP-----ENVVEYVAHQIDNSVRELEGAM 347 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 L+ + + + +A +L + V +K++ +E IQ++V +++ + + S R Sbjct: 348 VSLLAQSTLNKKEIDLNLAKSMLKNFVKN-TSKEISMEYIQKLVCEYFEVPVEMVKSKVR 406 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R +V+ RQ++MYL+K T S IG FG RDH+TV++A + VE ++ETD K V+ Sbjct: 407 KREIVQARQISMYLAKNHTKSSLKSIGNFFGGRDHSTVIYACQTVEDLIETDKKFKTYVQ 466 Query: 495 -LLKRL 499 +LK+L Sbjct: 467 DILKKL 472 >gi|256820765|ref|YP_003142044.1| chromosomal replication initiation protein [Capnocytophaga ochracea DSM 7271] gi|256582348|gb|ACU93483.1| chromosomal replication initiator protein DnaA [Capnocytophaga ochracea DSM 7271] Length = 473 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 160/509 (31%), Positives = 252/509 (49%), Gaps = 60/509 (11%) Query: 16 EIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS 75 E AEK V RCLE +K+ + + +WF + + N + + Sbjct: 3 EAAEK-----VWSRCLEF------------IKDNITEQPFNTWFAPIVPVELEGNTLKIK 45 Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPI 134 VP+ F W++ Y+ L + + GV LV V P ++ S + +L+ Sbjct: 46 VPSKFFCEWLEENYIS----LLKSAMTFTLGVNSRLVYIVDTPLTKEQLPSTNRPELA-- 99 Query: 135 NTNISKSPIILGKQTISPVFGSP--------------LDSRFVFSTFIEGSSNRVALTAA 180 K + L +T P +P L+ F F+EG+SNR+A +A Sbjct: 100 -----KQTLTLATETKDPGLKNPFVIPGIREITVDPQLNLHQNFDNFVEGASNRLARSAG 154 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 ++A + G T NPLFI VGLGKTHL AI ++ P +V+Y++AE F + Sbjct: 155 MAVA--NKPGGTA--FNPLFIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQ 210 Query: 241 F--ASAIRDNCALNLKDSL---RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQV 294 F AS +D L D + + ID+L++DD+QFL GK+ Q F H+ N L + KQV Sbjct: 211 FISASTAKDKDKNTLNDFIHFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQV 270 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +D+ P +L ++ R+ SR + G+S L DYE R+ IL+N+ E I E Sbjct: 271 ILTSDKAPVDLFDIEQRLLSRFKWGLSAELQTPDYETRYKILENKFYNDGAE-----IGE 325 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIED 413 +++ ++A + T+ REL+G N L+ + +F + E+A ++ V + I+ Sbjct: 326 DIIAYLAENIRTNVRELEGVSNSLIAQAAFNRKEYSIELAQSIIDKSVKNNRND-LTIDH 384 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQ+++A ++ + L S R R VV+ RQ+AM+ SK T S IG + G RDH TVL Sbjct: 385 IQQIIADYFGLDIESLHSKTRKRNVVQARQLAMFFSKKYTKNSLYTIGSQIGQRDHATVL 444 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLISE 502 HA + VE ++ETD KK V L+ S+ Sbjct: 445 HACKTVENLIETDRAFKKYVSDLETKFSD 473 >gi|186474774|ref|YP_001856244.1| chromosomal replication initiation protein [Burkholderia phymatum STM815] gi|226735789|sp|B2JJ97|DNAA_BURP8 RecName: Full=Chromosomal replication initiator protein DnaA gi|184191233|gb|ACC69198.1| chromosomal replication initiator protein DnaA [Burkholderia phymatum STM815] Length = 518 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 181 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 235 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 236 IGNQLLMDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 295 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 296 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 355 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N+NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 356 ILMRK---AQSE--GVNLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 410 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 411 KEALKDLL-TVQNRQISVENIQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 470 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 516 >gi|256389233|ref|YP_003110797.1| chromosomal replication initiator protein DnaA [Catenulispora acidiphila DSM 44928] gi|256355459|gb|ACU68956.1| chromosomal replication initiator protein DnaA [Catenulispora acidiphila DSM 44928] Length = 570 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 144/396 (36%), Positives = 225/396 (56%), Gaps = 22/396 (5%) Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-----LDSRFVFSTF 167 +ALP S P+ + PI +S S G ++ +P G+ L+ ++VF TF Sbjct: 184 GMALPP--PRVSEPAPEENDPIAATLSLSTGRPGARSSTPDDGAKAQQAKLNEKYVFETF 241 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 + GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL AI + + P Sbjct: 242 VIGSSNRFAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIGHYARNLYPGT 296 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 RV Y++ E F F +AIRD +L+ R++D+L++DD+QFL+ K Q EF H N+ Sbjct: 297 RVRYVSTEEFTNDFINAIRDGAGNHLRKRYRDVDILMVDDIQFLENKEGTQEEFFHTFNT 356 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 L +++KQ+V ++DRPP +L +L+ R+RSR + G+ + + E R +IL+ + +Q+E Sbjct: 357 LHNASKQIVISSDRPPKQLNTLEDRLRSRFEWGLITDIQPPELETRIAILRKK---AQQE 413 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTG 404 LN EVL +A ++T+ REL+GA ++ S AP+ +A+++L +L+ Sbjct: 414 --GLNAPPEVLEFIASKISTNIRELEGALIRVTAFASLNRAPV-DLSLAEDVLKNLMPDA 470 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 ++ + I A ++ I+ DL R R +V RQ+AMYL + +T S P+IG+ F Sbjct: 471 AGPEITVSTIMAQTAMYFGITMEDLCGTSRSRILVTARQIAMYLCRELTDLSLPKIGQAF 530 Query: 465 GDRDHTTVLHAVRKVEKML-ETDITLKKEVELLKRL 499 G RDHTTV+HA RK+ +L E + EL R+ Sbjct: 531 GGRDHTTVMHADRKIRSLLPERRAIFNQVTELTNRI 566 >gi|295394846|ref|ZP_06805059.1| ATPase involved in DNA replication initiation [Brevibacterium mcbrellneri ATCC 49030] gi|294972179|gb|EFG48041.1| ATPase involved in DNA replication initiation [Brevibacterium mcbrellneri ATCC 49030] Length = 476 Score = 218 bits (554), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 140/442 (31%), Positives = 232/442 (52%), Gaps = 19/442 (4%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS 125 +++ ++V +SVP + + + + + + F E R + S ++ + A Sbjct: 40 AIVEDLVVISVPNDLTRHTFERELRQPLGQAFSEALGRPVSFAFALDS-SMNTDPTPAEE 98 Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 P+ T P ++ V S L+ ++ F +F+ G+SNR A AA ++AE Sbjct: 99 PATTSAPEPQIATPAQPTVVAPTESPEVGSSDLNPKYTFDSFVIGASNRFAHAAAFAVAE 158 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 + Y NPLFI+ GLGKTHLL A+ + +++ P +RV Y+++E F+ F + + Sbjct: 159 SPAKAY-----NPLFIYGDSGLGKTHLLHAVGHYALQLYPKIRVRYVSSEEFVNDFINTV 213 Query: 246 RDNCALN-----LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 N + R +D+L+IDD+QFLQGK EF H N+L KQV+ +D Sbjct: 214 GSQVTSNTLRPAFQRRYREVDILMIDDIQFLQGKDATVEEFFHTFNALHAENKQVIITSD 273 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 +PP L+ + R+RSR + G+ + D E RF+IL+N+ A + L + +EVL Sbjct: 274 QPPKMLKGFEERLRSRFESGLLTDVQPPDLETRFAILRNKAA-----NENLAVPDEVLEF 328 Query: 360 VARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A V+++ REL+GA ++ F + ++ +A +L + ET ++ DI Sbjct: 329 IASRVSSNIRELEGALIRVTAFSNLNEQVIDVGLAQTVLKDFITHDETPEITATDIMGQT 388 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A+++N+S DL + R RT+ RQ+AMYL + +T S P+IG FG RDHTTV+HA RK Sbjct: 389 AQYFNLSIEDLQGSSRSRTLTTARQIAMYLCRELTDLSLPKIGEAFGGRDHTTVMHANRK 448 Query: 479 V-EKMLETDITLKKEVELLKRL 499 + +M E + EL R+ Sbjct: 449 IGTQMAERRAIYTQVTELTNRI 470 >gi|319955761|ref|YP_004167024.1| chromosomal replication initiator protein dnaa [Nitratifractor salsuginis DSM 16511] gi|319418165|gb|ADV45275.1| chromosomal replication initiator protein DnaA [Nitratifractor salsuginis DSM 16511] Length = 442 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 141/453 (31%), Positives = 239/453 (52%), Gaps = 45/453 (9%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +L+ ++ P+ Y + + L + + V P F WI++ YL T+ LF+ E Sbjct: 10 KLRKEIPPEEYERYLRHLHYDDEASRVDRVVFRAPNIFAARWIRSNYLNTLAHLFEIESG 69 Query: 103 RIQGVEILVRSVALPSVEKTASSPSIT-KLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 +EI V T+ +P T + SP N K T + + L+ Sbjct: 70 IRPEIEI--------QVGGTSRAPKATPRKSPEN-----------KSTATAL----LNPS 106 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F +FI GSSN+ A T A S+AE Y NPLFI+ VGLGKTHLLQAI N + Sbjct: 107 FTFESFIVGSSNQFAYTTALSVAEKPGKLY-----NPLFIYGGVGLGKTHLLQAIGNYRL 161 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 Q +V+Y T E+F+ +F S ++ ++ RN DLLLIDD+QFL K Q E Sbjct: 162 --QQGDQVIYTTLEHFLNKFLSHLQSQTMEKFREHYRNCDLLLIDDIQFLSRKEKTQDEL 219 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++ KQ+V +DRPP ++ L+ R+R+R + G+ + + E + +I++ + Sbjct: 220 FHTFNELHNAGKQIVMTSDRPPKKIAFLEERLRTRFEWGLQADIQPPELETKIAIIQKKC 279 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 + + +++E++ ++A + + RE++G L+ ++ + +L I E + Sbjct: 280 ELD-----GIRLDQEIIHYIATHMGDNIREIEGT---LIRLNAMSAMLNQPITLEFARNA 331 Query: 401 VNTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + +K + I+DI ++V+K N+ +D+ S +R + VV R++ +YL++ +TP S Sbjct: 332 IKDQLKEKQENISIDDIVKIVSKELNVKPSDIRSKKRNKNVVNARRIVIYLARNLTPNSM 391 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 P+I FG +DH+ V HA+RK+ ++ E+D K Sbjct: 392 PQIALYFGMKDHSAVSHALRKINEIAESDENFK 424 >gi|319760739|ref|YP_004124676.1| chromosomal replication initiator protein dnaa [Alicycliphilus denitrificans BC] gi|317115300|gb|ADU97788.1| chromosomal replication initiator protein DnaA [Alicycliphilus denitrificans BC] Length = 473 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 143/436 (32%), Positives = 231/436 (52%), Gaps = 27/436 (6%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 V L V F WI+ +Y I+ L +E + + +E+ AL E A T + Sbjct: 56 VTLLVANRFKLDWIRAQYAGRISALLEELYGQPVTLEL-----ALAQRESVAR----TYV 106 Query: 132 SPINTNISKSPIILGKQTISPV-----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 P+ +I + F + L+ F T +EG++NR+A +AA +A Sbjct: 107 RPVPASIEAPAANAPAGAAAEEPPAGAFRTRLNLALTFDTLVEGTANRMARSAAMHVAGS 166 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 H Y NPLFI+ VGLGKTHL+ A+ N + +P+ +V+Y+ AE F+ + + Sbjct: 167 PGHLY-----NPLFIYGGVGLGKTHLVHAVGNKLLADRPDAKVLYIHAEQFVSDVVKSYQ 221 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K+ ++DLLLIDD+QF K Q EF + +LL +V +D P L Sbjct: 222 RRTFDDFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGL 281 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ++ R+ SR G++V + + EMR +IL N+ E P EEV VA+ V Sbjct: 282 ANIHERLVSRFDSGLTVAIEPPELEMRVAILINKARAEHAEMP-----EEVAFFVAKNVR 336 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA +++ F ++ ++A E L L++ + +++ +E+IQ+ VA +Y I Sbjct: 337 SNVRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSI-QNRQISVENIQKTVADYYKI 395 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 396 KVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIGAERQ 455 Query: 485 TDITLKKEVELLKRLI 500 L +++ +L++ + Sbjct: 456 QLTELNQQLHVLEQTL 471 >gi|284799976|ref|ZP_05985356.2| DNA replication initiator protein [Neisseria subflava NJ9703] gi|284796247|gb|EFC51594.1| DNA replication initiator protein [Neisseria subflava NJ9703] Length = 506 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE GY NP F++ S GLGKTHL+QAI Sbjct: 170 LSRDYTFETLVEGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIG 224 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 225 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 284 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 285 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 344 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 345 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 399 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI AK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 400 TALQDII--AEKHKVITADIIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELT 457 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 458 TLSLPSIGDAFGGRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILI 504 >gi|325980882|ref|YP_004293284.1| chromosomal replication initiator protein DnaA [Nitrosomonas sp. AL212] gi|325530401|gb|ADZ25122.1| chromosomal replication initiator protein DnaA [Nitrosomonas sp. AL212] Length = 474 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/458 (30%), Positives = 244/458 (53%), Gaps = 26/458 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYL---ETITKLFQEE 100 + ++ + +W + L+ + N V L P F+ W+ + ++ E++ K + ++ Sbjct: 30 FQKELNAQQFNTWIKPLEIDLAFNGDNKVVLIAPNRFVSQWVADNFIMHIESMAKAYFDK 89 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + + ++ + K +S +++ +P + + P + + T + G L+ Sbjct: 90 NIQFH------LKLSDQTDTKNNTSNQMSESAPSSVEVKPEPKTVYQPTKKNLNG--LNP 141 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 F F FI G +N++A A +AE Y NPLFI+ VGLGKTHL+QAI N Sbjct: 142 NFTFDNFITGKANQLARAGAIQVAESPGVAY-----NPLFIYGGVGLGKTHLIQAIGNYV 196 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 + + ++ Y+ AE ++ SA + K ++DLLL+DD+QF GK Q E Sbjct: 197 HENNKSAKIRYVHAEKYVSDVVSAYQHKAFDKFKLYYHSLDLLLVDDVQFFGGKNRTQEE 256 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F + N+L+++ KQV+ D P E+ L+ R+ SR G++V + + EMR +IL Sbjct: 257 FFYAFNALIETHKQVIITCDTYPKEITGLEERLVSRFGWGLTVAVEPPELEMRVAIL--- 313 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADELLS 398 + + E K+ ++E V +A+ + ++ REL+GA + L F +T ++A E L Sbjct: 314 --LKKAEMEKIRLDENVAFFIAKHIRSNVRELEGALKRVLAFSRFVNQDITLDLAKEALK 371 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ +++++ IE+IQ+ VA +Y I +++ S +R R V RPRQ+AM ++K +T S P Sbjct: 372 DLLAV-QSRQISIENIQKTVADYYKIKVSEMYSKKRSRIVARPRQMAMAIAKELTSLSLP 430 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 431 DIGEAFGGRDHTTVLHGYRKINELRISDPLVSRDFNAL 468 >gi|289422504|ref|ZP_06424347.1| chromosomal replication initiator protein DnaA [Peptostreptococcus anaerobius 653-L] gi|289157076|gb|EFD05698.1| chromosomal replication initiator protein DnaA [Peptostreptococcus anaerobius 653-L] Length = 460 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 112/341 (32%), Positives = 202/341 (59%), Gaps = 10/341 (2%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F TF+ G +N +AL A+ S+A ++++ NPL+++ VGLGKTHL+QA Sbjct: 120 SNLNPKYTFDTFVSGPNNNIALAASLSMAGLNNNLKGK---NPLYLYGGVGLGKTHLMQA 176 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + I++ P+ +V+Y+T+E F ++++N + R++D+L++DD+QF GK Sbjct: 177 IGHEIIRKDPSKKVLYVTSETFTNDLIMSLKNNTPETFRQKYRSVDVLMVDDVQFFSGKN 236 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q E H N L K+++ +D+ P ++ L+ R+ SR G + ++E R + Sbjct: 237 STQEELFHTFNVLQGQNKKIIFTSDKYPKDISGLEDRLTSRFGSGAVFDIQPPEFETRVA 296 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL+ + +D ++++ +++ ++A V ++ REL+GA N + F S A + + A Sbjct: 297 ILQKK-----AQDENMSVDMDIIYYIAENVKSNIRELEGALNTVSFYASIAGRKIDLDTA 351 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L + + + TK+ I I+ VA YN++ +L S +R + + PRQVAMYL++ + Sbjct: 352 REALKNQIISYNTKETNILRIKETVADAYNVTVEELDSKKRSKNIAFPRQVAMYLARNLL 411 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +S P+IG FG RDHTTV+HA++++E +E D + +E Sbjct: 412 DKSLPKIGEEFGGRDHTTVMHAIKRIEDEIEKDDMTRMRIE 452 >gi|255533487|ref|YP_003093859.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] gi|255346471|gb|ACU05797.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] Length = 476 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 144/493 (29%), Positives = 261/493 (52%), Gaps = 42/493 (8%) Query: 26 VDKRCLEV--NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 ++K C+EV NC I +K+ + + +WF+ + + N++ + VP+ F Sbjct: 1 MEKTCIEVWKNCLQI-------IKDNIPTQSFKTWFEPISALKLEGNVLTIQVPSLFFYE 53 Query: 84 WIKNRYL----ETITKLFQEEHSRIQGVEILVRS--------VALPSVEKTASSPSITKL 131 W++ Y+ +T+ K +E R++ ++ +S +PS A + + Sbjct: 54 WLEEHYVGLLRKTVKKQLGDE-GRLEYNIVVDKSSNSGSPYTTNMPSNGNGADAKKQSMP 112 Query: 132 SPINTNIS-KSPII---LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 P++ N K+P I L K + P L++ + F +IEG NR+A +A ++A Sbjct: 113 IPVSINKDIKNPFIIPGLKKLNVDP----QLNANYTFENYIEGDCNRLARSAGYAVAA-- 166 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 G T+ NPL I+ VGLGKTHL QAI N + P+ V+Y++ E F +F ++++ Sbjct: 167 KPGGTS--FNPLMIYGGVGLGKTHLAQAIGNEIKRNMPDKLVIYVSCEKFCQQFVDSLKN 224 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 N + + + +D++++DD+ GK Q F H+ N L S KQV+ ++D+ P +L Sbjct: 225 NTINDFVNFYQAMDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQVILSSDKAPKDLA 284 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 L+ R+ SR + G+S L + D E R +IL+ ++ E P EV+ +VA + Sbjct: 285 GLEERLLSRFKWGLSADLQVPDLETRIAILRKKMYADGIELP-----AEVVEYVAHNIDN 339 Query: 367 SGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 + REL+GA L+ + + + +A ++L + + +K++ +E IQ++V +++ + Sbjct: 340 NVRELEGAMVSLLAQSTLNKKDIDLALAKQMLKNFIKN-TSKEISMEYIQKLVCEYFEVP 398 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 + + S R R +V+ RQ++MYLSK T S IG FG RDH+TV++A + VE +++T Sbjct: 399 VDMVKSQTRKREIVQARQISMYLSKSHTKSSLKTIGAFFGGRDHSTVIYACQTVEDLIDT 458 Query: 486 DITLKKEVELLKR 498 D K V +++ Sbjct: 459 DKKFKGYVHDIQK 471 >gi|167589705|ref|ZP_02382093.1| chromosomal replication initiation protein [Burkholderia ubonensis Bu] Length = 357 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 20 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 74 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 75 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 134 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 135 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 194 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 195 IL-----MRKAQSEGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 249 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 250 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 308 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 309 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 355 >gi|325689354|gb|EGD31360.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK115] Length = 450 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 145/435 (33%), Positives = 232/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 ++ L P L W +N +T F+ + +I G I + + +SP I+ Sbjct: 42 VIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNTETPKSAVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + P S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQP-----SLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ E+ + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----ENLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|254483197|ref|ZP_05096430.1| chromosomal replication initiator protein DnaA [marine gamma proteobacterium HTCC2148] gi|214036568|gb|EEB77242.1| chromosomal replication initiator protein DnaA [marine gamma proteobacterium HTCC2148] Length = 475 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 150/473 (31%), Positives = 255/473 (53%), Gaps = 44/473 (9%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 RL++++ + +W + L+ S H++ L P F+K ++ +++ I++L E Sbjct: 12 RLQDELPSQQFNTWIRPLQASSDGHSLT-LFAPNRFIKDFVSDKFSRRISELIAELEPG- 69 Query: 105 QGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS-----KSPIIL--- 145 G++++++ + P+ S P + K+ P + + +P++ Sbjct: 70 GGLDVVLQIGSEVNKPTLPAAMTPAAHTKPSVPVVDKMPPAVSGAAVFSRPTAPVVTRNG 129 Query: 146 -----GKQTISPVFGS-----PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + + + GS L + F F+EG SN++AL AA+ +AE Y Sbjct: 130 IANGAAQARQAEIEGSLQHQHSLVETYTFDNFVEGKSNQLALAAARQVAENPGDSY---- 185 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLF++ VGLGKTHL+ A+ NA +PN +VVYL +E F+ A++ N + K Sbjct: 186 -NPLFLYGGVGLGKTHLMHAVGNALRLNKPNAKVVYLHSERFVADMVKALQLNAISDFKR 244 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R +D LLIDD+QF K Q EF H N+LL+ +Q++ DR P E++ L+ R++S Sbjct: 245 YYRTVDALLIDDIQFFAKKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEIDGLEERLKS 304 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + + E R +IL + + ++N+ + +A+ + ++ REL+GA Sbjct: 305 RFGWGLTVAVEPPELETRVAIL-----MKKATQARINLPPDAAFFIAQRIRSNVRELEGA 359 Query: 375 FNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 +++ F + ++ E L L+ + K++ ++IQR VA++Y I DL+S R Sbjct: 360 LKRVIASAHFTGKDIDIDLIKESLKDLLAL-QDKQVSQDNIQRTVAEYYKIKVADLMSRR 418 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 R R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RK++++ ET+ Sbjct: 419 RSRSVARPRQVAMALAKELTNHSLPEIGDSFGGRDHTTVLHACRKIKELRETN 471 >gi|213962527|ref|ZP_03390789.1| chromosomal replication initiator protein DnaA [Capnocytophaga sputigena Capno] gi|213954853|gb|EEB66173.1| chromosomal replication initiator protein DnaA [Capnocytophaga sputigena Capno] Length = 473 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 153/490 (31%), Positives = 248/490 (50%), Gaps = 43/490 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E +++ +K+ + + +WF + + N + + VP+ F W++ E Sbjct: 5 AEKVWSKCLEFIKDNITEQQFNTWFVPIVPVELEGNALKIKVPSRFFYEWLE----ENFI 60 Query: 95 KLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L + + GV LV V P ++ S + +L+ K + L +T P Sbjct: 61 SLLKSAMTFTLGVNSRLVYIVDNPLTKEQLPSTNRPELA-------KQTLTLATETKDPG 113 Query: 154 FGSP--------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P L+ F F+EG+SNR+A +A ++A + G T NPL Sbjct: 114 LKNPFVIPGIREITVDPQLNLHQNFDNFVEGASNRLARSAGMAVA--NKPGGTA--FNPL 169 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF--ASAIRDNCALNLKDSL 257 FI VGLGKTHL AI ++ P +V+Y++AE F +F AS +D L D + Sbjct: 170 FIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFI 229 Query: 258 ---RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + ID+L++DD+QFL GK+ Q F H+ N L + KQV+ +D+ P +L ++ R+ Sbjct: 230 HFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLL 289 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR + G+S L DYE R+ IL+N+ E I E+++ ++A + T+ REL+G Sbjct: 290 SRFKWGLSAELQTPDYETRYKILENKFYNDGAE-----IGEDIIAYLAENIRTNVRELEG 344 Query: 374 AFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 N L+ + +F + E+A ++ V + + I+ IQ+++A ++N+ L S Sbjct: 345 VSNSLIAQAAFNRKEYSIELAQSIIDKSVKNNKND-LTIDHIQQIIADYFNLDIESLHSK 403 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 R R VV+ RQ+AM+ SK T S IG + G RDH TVLHA + VE ++ETD KK Sbjct: 404 TRKRNVVQARQLAMFFSKKYTKNSLSTIGSQIGQRDHATVLHACKTVENLIETDRAFKKY 463 Query: 493 VELLKRLISE 502 V L+ S+ Sbjct: 464 VSDLETKFSD 473 >gi|126695929|ref|YP_001090815.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9301] gi|166214688|sp|A3PBT9|DNAA_PROM0 RecName: Full=Chromosomal replication initiator protein DnaA gi|126542972|gb|ABO17214.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9301] Length = 464 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 153/481 (31%), Positives = 248/481 (51%), Gaps = 49/481 (10%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V LK + + +W + KF+ + ++ L P F W++ Y +TI K Sbjct: 7 IWAEVQQSLKKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCQTIEKAA 66 Query: 98 QEEHSRIQGVEILV-----RSVALPSVEKTASSPSI----TKLSPINT------NISKSP 142 +E I G ++ V ++++ S K I TK P N+ N SK+P Sbjct: 67 KE----ICGHDVKVVFKSEKNISRDSTNKENLDDQIVNHKTKSFPNNSQEISSKNRSKNP 122 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ R+VF F+ G ++R+A AA ++AE + NPLFI Sbjct: 123 -------------NGLNLRYVFKRFVVGPNSRLAHAAALAVAESPGREF-----NPLFIC 164 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAI + ++ P +V Y++ E F S IR + ++D RN+DL Sbjct: 165 GGVGLGKTHLMQAIGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNVDL 224 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 +LIDD+QFL+GK Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ Sbjct: 225 ILIDDIQFLEGKEYTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMT 284 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + D E R +IL+ + E +++ +++ +A T++ REL+GAF + V Sbjct: 285 ADIQPPDLETRTAILQKK-----AEQESMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAF 339 Query: 382 HSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 S P+ IA L + V + K I V+ + +S ++L+S+ R + V Sbjct: 340 ASITGLPMTVQSIAPMLDPNSVGVVVSPKQVINK----VSDFFKVSTDELISSSRRKPVS 395 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+ MYL + T S P IG FG +DHTTV++A+ +VEK L D + +V+ ++ L Sbjct: 396 QARQIGMYLMRHGTDLSLPRIGDEFGGKDHTTVMYAIEQVEKKLSIDPNIASQVQKIRDL 455 Query: 500 I 500 + Sbjct: 456 L 456 >gi|225077253|ref|ZP_03720452.1| hypothetical protein NEIFLAOT_02308 [Neisseria flavescens NRL30031/H210] gi|224951397|gb|EEG32606.1| hypothetical protein NEIFLAOT_02308 [Neisseria flavescens NRL30031/H210] Length = 504 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE GY NP F++ S GLGKTHL+QAI Sbjct: 168 LSRDYTFETLVEGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIG 222 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 223 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 282 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 283 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 342 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 343 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 397 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI AK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 398 TALQDII--AEKHKVITADIIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELT 455 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 456 TLSLPSIGDAFGGRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILI 502 >gi|319639360|ref|ZP_07994111.1| chromosomal replication initiator protein dnaA [Neisseria mucosa C102] gi|317399544|gb|EFV80214.1| chromosomal replication initiator protein dnaA [Neisseria mucosa C102] Length = 506 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE GY NP F++ S GLGKTHL+QAI Sbjct: 170 LSRDYTFETLVEGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIG 224 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 225 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 284 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 285 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 344 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 345 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 399 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI AK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 400 TALQDII--AEKHKVITADIIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELT 457 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 458 TLSLPSIGDAFGGRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILI 504 >gi|319790695|ref|YP_004152335.1| chromosomal replication initiator protein dnaa [Variovorax paradoxus EPS] gi|315593158|gb|ADU34224.1| chromosomal replication initiator protein DnaA [Variovorax paradoxus EPS] Length = 459 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 148/469 (31%), Positives = 248/469 (52%), Gaps = 23/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETI 93 ES++ +L ++ + +W + L V ++ ++V F WI+ +Y I Sbjct: 8 ESLWQACVDQLAQELSEQQFNTWIKPLTAQ-VADDLSRMTVFVANRFKLDWIRAQYAGKI 66 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + ++ + + VE+ AL E S I ++ T++ + G++ + Sbjct: 67 AAMAEKMYGQPVAVEL-----ALAPREAPVRSAPIAVMT--ETDVPRDVAGPGEEPAAAG 119 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F + L+S F T +EG++NR+A AA +A + H Y NPLFI+ VGLGKTHL+ Sbjct: 120 FKNRLNSGLTFDTLVEGTANRMARAAAMHVAGMPGHLY-----NPLFIYGGVGLGKTHLM 174 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +P+ +V+Y+ AE F+ A + K+ ++DLLLIDD+QF Sbjct: 175 HAVGNRLLADRPDSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFAN 234 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + +LL +V +D P L + R+ SR G++V + + EMR Sbjct: 235 KDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFDSGLTVAIEPPELEMR 294 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL N+ E P EEV VA+ V ++ REL+GA +++ F ++ Sbjct: 295 VAILINKARAESAEMP-----EEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIA 349 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L L++ + +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K Sbjct: 350 LAREALRDLLSI-QNRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKE 408 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 409 LTQKSLPEIGELFGGRDHTTVLHAVRKISGERQQLTELNQQLHVLEQTL 457 >gi|225873717|ref|YP_002755176.1| chromosomal replication initiator protein DnaA [Acidobacterium capsulatum ATCC 51196] gi|225794217|gb|ACO34307.1| chromosomal replication initiator protein DnaA [Acidobacterium capsulatum ATCC 51196] Length = 478 Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 150/478 (31%), Positives = 250/478 (52%), Gaps = 44/478 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ +V Y +W + +F V + + +PT + +I +RY + I H I+ Sbjct: 22 LEKKVNRQSYDTWLKPTRFSHVKDRTLIVRIPTTDFR-YIADRYDDLI-------HEAIE 73 Query: 106 GVEILVRSVALPSVEKT------------ASSPSITKLSPINTNISKSPIIL-GKQTISP 152 +++ V+ + E+ A +P+ +P N + L G Sbjct: 74 NLQLEFDEVSFVTPEEDPMLARAREDGGFAPAPAHAPNTPGNAGAQRPAQRLNGAMPQQS 133 Query: 153 VF----GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 F + L+ R+ F F+ GS N+ A AA+++AE S Y NPLF++ VG+G Sbjct: 134 RFDWSTAAQLNPRYTFDAFVIGSGNQFARAAAEAVAERPSKAY-----NPLFLYGGVGMG 188 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + R P+ + Y++ E F S++R + +D R++DLLLIDD+ Sbjct: 189 KTHLMHAIGHEVKLRNPSASICYVSVEKFTNEMISSLRYDKMTTFRDKFRSVDLLLIDDI 248 Query: 269 QFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL Q + Q EF H N+L ++ KQ+V A+DRPP EL ++ R+RSR + G+ + Sbjct: 249 QFLSQKERTQEEFFHTFNALHENMKQIVIASDRPPKELPEIEDRLRSRFEWGLIADIQPP 308 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E + +IL+ + E + + +V + +A V T+ REL+GA +L +++ + Sbjct: 309 DLETKVAILQKK-----AESEHVLLPTDVALFIASNVRTNVRELEGALTRLF---AWSQL 360 Query: 388 LTAEIA----DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 EI+ + L ++T + +K+ IE IQR VA+ + + +L R VV PRQ Sbjct: 361 NGVEISLATTQQCLKQFIDT-QVRKITIEAIQRAVAEQFGMRVVELKQKNNSRAVVVPRQ 419 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AMYL+K MT S PEIGR+FG + HTTV+H++ K+++ TD L + L+ ++ Sbjct: 420 IAMYLAKQMTEASLPEIGRQFGGKHHTTVMHSIGKIDEQRRTDKNLNSTLNKLQETLN 477 >gi|295425825|ref|ZP_06818506.1| DNA-directed DNA replication initiator protein [Lactobacillus amylolyticus DSM 11664] gi|295064518|gb|EFG55445.1| DNA-directed DNA replication initiator protein [Lactobacillus amylolyticus DSM 11664] Length = 459 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 203/349 (58%), Gaps = 18/349 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 123 LNDKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTHLMQAIG 177 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +PN ++VY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 178 HQMLAERPNAKIVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFFAKKEGI 237 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 238 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLETRIAIL 297 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I++ L ++A V T+ REL+GA LV + A I + + Sbjct: 298 RKK-----AEADGLTIDDNTLDYIASQVDTNIRELEGA---LVKVEAHATIEKEDINVNL 349 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L+ L + + ++I IQ +VA ++ S +L +RVR +V PRQVAMYLS+ + Sbjct: 350 ARDALADLKLVQKNRGLQISKIQEVVANYFQTSIAELKGKKRVRQIVVPRQVAMYLSREL 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG+ FG +DHTTV+HA K+++ ++TD +K + L++++ Sbjct: 410 TDASLPKIGQEFGGKDHTTVMHAYEKIQQQIKTDADIKSAIFDLRQMLD 458 >gi|319945018|ref|ZP_08019280.1| DNA-directed DNA replication initiator protein [Lautropia mirabilis ATCC 51599] gi|319741588|gb|EFV94013.1| DNA-directed DNA replication initiator protein [Lautropia mirabilis ATCC 51599] Length = 592 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 128/351 (36%), Positives = 203/351 (57%), Gaps = 17/351 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F+ F+ G +N +A AA +A+ Y NPLFIH VGLGKTHL+QA Sbjct: 253 SRLNPGLTFAAFVNGKANDLARAAALQVADRPGSAY-----NPLFIHGGVGLGKTHLMQA 307 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + NA +R+ + Y+++ F+ AIR N K +++D+LLIDD+QFL K Sbjct: 308 VGNAIQQRESRAIIRYISSNQFVQDLIQAIRRNAIDRFKHYYQSLDVLLIDDIQFLSDKQ 367 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H+ ++ + +Q+V D P EL+ +D R+ SRL G+ V + + EMR + Sbjct: 368 RSQEEFFHVFETMTINQRQIVITCDTYPKELKGIDDRLISRLNSGLIVAIEPPELEMRVA 427 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+ + E ++ + ++V +A+ + + REL+GA + + SF + LT E+ Sbjct: 428 ILQRK-----AEQARIRLPDDVAYFIAKNIRRNVRELEGALQRAIHYASFRSSPLTLELV 482 Query: 394 DELLSHLV--NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ N G+ + I+ IQ+ VA++Y I + D+ S R+ + PRQ+AMYL+K Sbjct: 483 KEALKDLISFNRGQ---ISIDFIQKTVAEYYKIKQADMYSKRKPAKIALPRQIAMYLAKE 539 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T +S PEIG FG +DHTTVL+AVRK+ ++ D L K++ +L + + E Sbjct: 540 LTQKSLPEIGDAFGGKDHTTVLYAVRKITELRAHDEDLNKQIHVLDQTLRE 590 >gi|312794750|ref|YP_004027672.1| Chromosomal replication initiator protein dnaA [Burkholderia rhizoxinica HKI 454] gi|312166525|emb|CBW73528.1| Chromosomal replication initiator protein dnaA [Burkholderia rhizoxinica HKI 454] Length = 530 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G V NPLF++ VGLGKTHL+ A Sbjct: 193 SKLNPVLTFENFVTGKANQLARAAAIQVA--DNPG---VSYNPLFLYGGVGLGKTHLIHA 247 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N ++ + N R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 248 IGNQLLQDKANARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKS 307 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 308 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 367 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E + +NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 368 ILMRK---AQSEG--VALNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 422 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 423 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 481 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 482 QKSLPEIGELFGGRDHTTVLHAVRKISDERGKDAQLNHELHVLEQTL 528 >gi|239813020|ref|YP_002941930.1| chromosomal replication initiation protein [Variovorax paradoxus S110] gi|239799597|gb|ACS16664.1| chromosomal replication initiator protein DnaA [Variovorax paradoxus S110] Length = 459 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 148/469 (31%), Positives = 248/469 (52%), Gaps = 23/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETI 93 ES++ +L ++ + +W + L V ++ ++V F WI+ +Y I Sbjct: 8 ESLWQACVDQLAQELSEQQFNTWIKPLTAQ-VADDLSRMTVFVANRFKLDWIRAQYAGKI 66 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + ++ + + VE+ AL E S + L+ T++ + G++ + Sbjct: 67 AAMAEKMYGQPVAVEL-----ALAPREAPVRSAPVAVLA--ETDVPRDVAGPGEEPANAG 119 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F + L+S F T +EG++NR+A AA +A + H Y NPLFI+ VGLGKTHL+ Sbjct: 120 FKNRLNSGLTFDTLVEGTANRMARAAAMHVAGMPGHLY-----NPLFIYGGVGLGKTHLM 174 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +P+ +V+Y+ AE F+ A + K+ ++DLLLIDD+QF Sbjct: 175 HAVGNRLLADRPDSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFAN 234 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + +LL +V +D P L + R+ SR G++V + + EMR Sbjct: 235 KDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFDSGLTVAIEPPELEMR 294 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL N+ E P EEV VA+ V ++ REL+GA +++ F ++ Sbjct: 295 VAILINKARAESAEMP-----EEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIA 349 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L L++ + +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K Sbjct: 350 LAREALRDLLSI-QNRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKE 408 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 409 LTQKSLPEIGELFGGRDHTTVLHAVRKISGERQQLTELNQQLHVLEQTL 457 >gi|161523181|ref|YP_001578193.1| chromosomal replication initiation protein [Burkholderia multivorans ATCC 17616] gi|189348958|ref|YP_001944586.1| chromosomal replication initiation protein [Burkholderia multivorans ATCC 17616] gi|221214574|ref|ZP_03587544.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD1] gi|226735788|sp|A9AI97|DNAA_BURM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|160340610|gb|ABX13696.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans ATCC 17616] gi|189332980|dbj|BAG42050.1| chromosomal replication initiator protein [Burkholderia multivorans ATCC 17616] gi|221165464|gb|EED97940.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD1] Length = 524 Score = 216 bits (551), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 187 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 241 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 242 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 301 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 302 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 361 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 362 ILMRK---AQSE--GVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 416 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 417 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 475 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 476 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 522 >gi|227549437|ref|ZP_03979486.1| chromosomal replication initiation protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078514|gb|EEI16477.1| chromosomal replication initiation protein [Corynebacterium lipophiloflavum DSM 44291] Length = 534 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 126/346 (36%), Positives = 198/346 (57%), Gaps = 14/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F+ GSSNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 193 LNPKYTFENFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAG 247 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + QPNLR+ Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Sbjct: 248 NYAKLLQPNLRISYVSSEEFTNDYINSVRDDRQESFKRRYRNLDILMVDDIQFLEGKEGT 307 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 308 QEEFFHTFNALHQQNKQIILSSDRPPRQLTTLEDRLRTRFEGGLITDVQPPDLETRIAIL 367 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + A +++ VL +A +S REL+GA ++ S PI T E+A Sbjct: 368 MKKAAAD-----GTHVDHAVLELIASQFESSIRELEGALIRVSAYSSLINEPI-TLEVAQ 421 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L L+ G + I+ A++++IS + L + R V RQ+AMYL + +T Sbjct: 422 VALRDLLPNGGEVTISAAVIKEAAAEYFDISLDQLTGAGKTRLVAHARQLAMYLCRELTD 481 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG FG +DHTTV++A RK+ K + + E+++L ++I Sbjct: 482 LSLPKIGDEFGGKDHTTVMYADRKIRKEMTENRGTYDEIQVLTQMI 527 >gi|221201814|ref|ZP_03574851.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2M] gi|221207680|ref|ZP_03580688.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2] gi|221172526|gb|EEE04965.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2] gi|221178234|gb|EEE10644.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2M] Length = 524 Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 187 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 241 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 242 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 301 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 302 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 361 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 362 ILMRK---AQSE--GVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 416 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 417 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 475 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 476 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 522 >gi|315223902|ref|ZP_07865748.1| DNA-directed DNA replication initiator protein [Capnocytophaga ochracea F0287] gi|314946131|gb|EFS98134.1| DNA-directed DNA replication initiator protein [Capnocytophaga ochracea F0287] Length = 473 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 151/490 (30%), Positives = 247/490 (50%), Gaps = 43/490 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E +++ +K+ + + +WF + + N + + VP+ F W++ Y+ Sbjct: 5 AEKVWSKCLEFIKDNITEQPFNTWFAPIVPVELESNTLKIKVPSKFFCEWLEENYIS--- 61 Query: 95 KLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L + + GV LV V P ++ S + +L+ K + L +T P Sbjct: 62 -LLKSAMTFTLGVNSRLVYIVDTPLTKEQLPSTNRPELA-------KQTLTLATETKDPG 113 Query: 154 FGSP--------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P L+ F F+EG+SNR+A +A ++A + G T NPL Sbjct: 114 LKNPFVIPGIREITVDPQLNLHQNFDNFVEGASNRLARSAGMAVA--NKPGGTA--FNPL 169 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF--ASAIRDNCALNLKDSL 257 FI VGLGKTHL AI ++ P +V+Y++AE F +F AS +D L D + Sbjct: 170 FIFGGVGLGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFI 229 Query: 258 ---RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + ID+L++DD+QFL GK+ Q F H+ N L + KQV+ +D+ P +L ++ R+ Sbjct: 230 HFYQLIDVLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLL 289 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR + G+S L DYE R+ IL+N+ E I ++++ ++A + T+ REL+G Sbjct: 290 SRFKWGLSAELQTPDYETRYKILENKFYNDGAE-----IGDDIIAYLAENIRTNVRELEG 344 Query: 374 AFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 N L+ + +F + E+A ++ V + I+ IQ+++A ++ + L S Sbjct: 345 VSNSLIAQAAFNRKEYSIELAQSIIDKSVKNNRND-LTIDHIQQIIADYFGLDIESLHSK 403 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 R R VV+ RQ+AM+ SK T S IG + G RDH TVLHA + VE ++ETD KK Sbjct: 404 TRKRNVVQARQLAMFFSKKYTKNSLSTIGSQIGQRDHATVLHACKTVENLIETDRAFKKY 463 Query: 493 VELLKRLISE 502 V L+ S+ Sbjct: 464 VSDLETKFSD 473 >gi|288573679|ref|ZP_06392036.1| chromosomal replication initiator protein DnaA [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569420|gb|EFC90977.1| chromosomal replication initiator protein DnaA [Dethiosulfovibrio peptidovorans DSM 11002] Length = 440 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 121/330 (36%), Positives = 194/330 (58%), Gaps = 12/330 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++FS+F+ G SNR+A A+ ++AE Y NPLFI VGLGKTHL+ A Sbjct: 104 SGLNPNYLFSSFVVGKSNRLAHAASLAVAESPGAAY-----NPLFIWGGVGLGKTHLMHA 158 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + +++ NL+V Y+++E F ++I++N + R +DLLLIDD+QFL GK Sbjct: 159 IGHHALQNDRNLKVGYVSSEKFTNELITSIKNNRTAEFRARYRTMDLLLIDDIQFLAGKE 218 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H NSL D KQ+V ++DRPP +++S++ R+ SR + G+ + DYE R + Sbjct: 219 STQEEFFHTFNSLHDGKKQIVLSSDRPPKDIKSIEDRLVSRFEWGLVTDIQSPDYETRIA 278 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + P E+V+ ++A+ V ++ REL+GA N+++ + +T E Sbjct: 279 ILTKKAEFRNYPMP-----EDVINYLAQNVPSNIRELEGALNRVIACAELNSEPVTVENT 333 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L +V + I+ IQ++VA+ + + DL S++R + RQ+AM++ + T Sbjct: 334 SEWLKDIVRHTSKGPVSIDLIQQIVAEECSFTVEDLTSSKRTSEIALARQIAMFICRKHT 393 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 S +IG F +DHTTVLHA +K+E++L Sbjct: 394 ESSLQQIGSAFNKKDHTTVLHAQKKIEQLL 423 >gi|238018223|ref|ZP_04598649.1| hypothetical protein VEIDISOL_00047 [Veillonella dispar ATCC 17748] gi|237864694|gb|EEP65984.1| hypothetical protein VEIDISOL_00047 [Veillonella dispar ATCC 17748] Length = 525 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 141/439 (32%), Positives = 229/439 (52%), Gaps = 35/439 (7%) Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSV--EKT---------ASSPSITKLSPINTNIS 139 E++ F +E S I ++ + LP V EKT P +P I Sbjct: 91 ESVDTTFVDE-SLIDDAPVVAPPMPLPPVVEEKTHQEEFYKPIYQEPVYIDRAPAPVEIP 149 Query: 140 KSPIILGKQTI---SPVFGS---PLD-------SRFVFSTFIEGSSNRVALTAAQSIAEV 186 P++ +T+ +P S P+D + F ++ G++NR+ AAQ++AE Sbjct: 150 DEPMVAPSKTVETTTPTLQSDNVPVDLSLSNLNPAYRFDNYVTGNANRIPFGAAQNVAEY 209 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLFI+ GLGKTHL+ AI NA + P+++V+ +T+E FM F ++ Sbjct: 210 PGGDY-----NPLFIYGPSGLGKTHLMHAIGNAIKENHPHMKVMSITSENFMNIFVETLQ 264 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 N +++ RNID+L+IDD+QFL+ + + E + N LL++ KQ+V +D P+++ Sbjct: 265 RNQGKLFRNTFRNIDVLMIDDIQFLESRESTKTELFNTFNELLNNNKQIVLTSDTMPNDM 324 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 E + R+RSR Q G + D E R +I ++ L K++ + I+ + + +VA + Sbjct: 325 EQFEDRLRSRFQAGYIATMENPDLETRIAIFRSLLEREYKKNRVIRIDNDSINYVALQFS 384 Query: 366 TSGRELDGAFNQLVFRHSFAPILTA---EIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + R L GAF +L+ S L + E + L+ LV+T E + IE IQ V+ ++ Sbjct: 385 ENVRVLQGAFTKLIGTASIDQRLESIDLEYTKQALAGLVHTEEVNMVTIESIQNFVSSYF 444 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 NI + DLL +R PRQVAMYL + M S+P+I F RDHTT+LHA K+ K Sbjct: 445 NIKKQDLLGKKRKAQFAFPRQVAMYLCRDMINESYPQIAAAFS-RDHTTILHAYDKITKE 503 Query: 483 LETDITLKKEVELLKRLIS 501 +E + K + +K+ ++ Sbjct: 504 IERNEETKNMISEIKQKLT 522 >gi|295135425|ref|YP_003586101.1| chromosomal replication initiator protein DnaA [Zunongwangia profunda SM-A87] gi|294983440|gb|ADF53905.1| chromosomal replication initiator protein DnaA [Zunongwangia profunda SM-A87] Length = 475 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 143/482 (29%), Positives = 252/482 (52%), Gaps = 27/482 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE--- 91 +S++ + +K+ + P Y +WF+ ++ + + + VP+ F W++ Y++ Sbjct: 5 AQSVWNSCLAFIKDNISPQAYKTWFEPIQAVKLTDCALSIQVPSKFFYEWLEEHYVKLLK 64 Query: 92 -TITKLFQEEHSRIQGVEIL-VRSVALPSVEKTASSPSITKLS-----PI---NTNISKS 141 ++T+ E+ + +++ LP EK S+ S P+ N + Sbjct: 65 VSLTRELGEKAKLVYVIKMENTYGNKLPFTEKIPSTQRANMTSQEVDVPVKNKNPELKNP 124 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 +I G + + S L+ + F F+EG SNR+A +A ++A + G T+ NPL I Sbjct: 125 FVIPGIRNVK--IESQLNPSYNFENFLEGESNRLARSAGLAVA--NKPGGTS--FNPLLI 178 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 VGLGKTHL AI + P V+Y++AE F ++ +++ N + + ID Sbjct: 179 FGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQIID 238 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + G+ Sbjct: 239 VLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKWGL 298 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S L D+E R SI+KN+L E P EE++ +A + + REL+GA L+ Sbjct: 299 SAELQHPDFETRVSIIKNKLYRDGVEMP-----EEIVEFLANNIKANIRELEGAIISLIA 353 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 SF +T E+A +++ + V + +++ I+ IQ++V+ ++ + L S R R +V Sbjct: 354 HSSFNKKDVTLELAKKIVDNYVKNTK-REVSIDYIQKVVSDYFQMDVETLQSKTRKRHIV 412 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD KK VE L + Sbjct: 413 QARQLAMFFAKKFTKASLASIGSQIGSRDHATVLHACKTVDNLASTDKQFKKFVEDLNKK 472 Query: 500 IS 501 ++ Sbjct: 473 LT 474 >gi|254430118|ref|ZP_05043821.1| chromosomal replication initiator protein DnaA [Cyanobium sp. PCC 7001] gi|197624571|gb|EDY37130.1| chromosomal replication initiator protein DnaA [Cyanobium sp. PCC 7001] Length = 492 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 145/498 (29%), Positives = 246/498 (49%), Gaps = 47/498 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E ++ V L+ + + +W + + + + +HL P +F W++ YL+TI Sbjct: 3 QAEELWHQVQQALQARFSKPTFETWIRPARCQGLHGSALHLEAPNSFACGWLRKNYLDTI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVE------------KTASSPSITKLSPINTNISKS 141 + E R V + A P+V A +P + + + Sbjct: 63 AAVASEIAGRPLQVSVDTAPQAEPAVGLAVGGQQVVVELPGAPAPPYGSATGVPASAMGQ 122 Query: 142 PIILGKQTISPVFGSP-----------------LDSRFVFSTFIEGSSNRVALTAAQSIA 184 P G +PV GS L+ R+VF+ F+ G ++R+A AA ++A Sbjct: 123 P---GGNGGAPVAGSAPGPTVHGRGGRQAFAPGLNPRYVFNRFVVGPNSRMAHAAALAVA 179 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 E NPLFI VGLGKTHL+QAI + ++ P RV Y++ E F A Sbjct: 180 EAPGR-----EFNPLFICGGVGLGKTHLMQAIGHYRLEINPEARVFYVSTETFTNDLIQA 234 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + +D R DL+L+DD+QF++GK Q EF H N+L ++ +Q+V A+DRPPS Sbjct: 235 IRKDGMQAFRDRYRAADLILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPS 294 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 ++ L R+ SR G+ + D E R +IL + E ++ + E++ +A Sbjct: 295 QIPRLQERLISRFSMGLIADIQAPDLETRMAILHKK-----AEQEQMALPRELIQFIAGR 349 Query: 364 VTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHY 422 T++ REL+GA + V +FA I + E ++ +++ G +++ E + V++ + Sbjct: 350 FTSNIRELEGALTRAV---AFASITGLPMTVESVAPMLDPAGRDVEVKPEQVLEKVSEVF 406 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 + +++ S R R V + RQV MYL + T S P IG FG +DH+TV++AV ++E+ Sbjct: 407 GVGGDEMRSPSRKRAVSQARQVGMYLMRHSTNLSLPRIGEVFGGKDHSTVMYAVEQIERK 466 Query: 483 LETDITLKKEVELLKRLI 500 L D L ++V+ ++ L+ Sbjct: 467 LSADPALARQVQQVRDLL 484 >gi|56798246|dbj|BAD82889.1| DnaA [Burkholderia multivorans] Length = 524 Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 187 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 241 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 242 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 301 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 302 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 361 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 362 ILMRK---AQSE--GVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 416 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 417 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 475 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 476 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 522 >gi|332363606|gb|EGJ41387.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1059] Length = 450 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 136/375 (36%), Positives = 212/375 (56%), Gaps = 19/375 (5%) Query: 135 NTNISKS----PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 NT SKS P I Q P + L S++ F F++G N A AA +++E + Sbjct: 85 NTETSKSVVTSPQISTVQLSLPPIDTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ E+ + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----ENLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|327467738|gb|EGF13232.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK330] Length = 450 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 145/435 (33%), Positives = 233/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ L P L W +N +T F+ + +I G I + + + +SP I+ Sbjct: 42 IIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNIDTPKSAVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + +S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQ-----LSLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ E+ + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----ENLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSNQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 D L+ E+E +K I Sbjct: 435 DDNLRLEIESIKNKI 449 >gi|311112571|ref|YP_003983793.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa ATCC 17931] gi|310944065|gb|ADP40359.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa ATCC 17931] Length = 553 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 199/349 (57%), Gaps = 21/349 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F TF+ G SNR A AA +++E + Y NPLFI+ GLGKTHLL AI Sbjct: 211 LNPNYTFDTFVIGQSNRFAHAAAFAVSESPAQAY-----NPLFIYGDSGLGKTHLLHAIG 265 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P+LRV Y+ +E F F ++IRD+ + K RN+D+LLIDD+QFL GK Sbjct: 266 HYAKHLFPSLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDMLLIDDIQFLAGKEHT 325 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQVV +D PP +L R+RSR + G+ + + E R +IL Sbjct: 326 QEEFFHTFNALHNHQKQVVITSDLPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAIL 385 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-----PILTAE 391 + + +Q E LN+ ++V+ ++A +T + REL+GA L+ +FA P+ A Sbjct: 386 RKK---AQSE--SLNVPDDVMEYIASHITANIRELEGA---LIRVTAFASLNKQPVDVA- 436 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ +L L+ ++ + A +++++ DL S R RT+ RQ+AMYL + Sbjct: 437 LAEVVLKDLITDAGDTEITSGQVLATTASYFDVTLEDLRSKSRTRTLTNARQIAMYLLRE 496 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 +T S P IG+ G RDHTTV+HAVRKV +M E T + +L ++ Sbjct: 497 LTDMSLPRIGQELGGRDHTTVMHAVRKVGAQMAERRTTFNQVTDLTNKI 545 >gi|325200955|gb|ADY96410.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis H44/76] Length = 502 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 166 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 220 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 221 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 280 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 281 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 340 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 341 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 395 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 396 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 453 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 454 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 500 >gi|294792397|ref|ZP_06757544.1| ATPase involved in DNA replication initiation [Veillonella sp. 6_1_27] gi|294456296|gb|EFG24659.1| ATPase involved in DNA replication initiation [Veillonella sp. 6_1_27] Length = 474 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 199/350 (56%), Gaps = 10/350 (2%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ A Sbjct: 128 SNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDY-----NPLFIYGPSGLGKTHLMHA 182 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I NA + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + Sbjct: 183 IGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESRE 242 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 + E + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R + Sbjct: 243 STKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIA 302 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA---E 391 I ++ L K++ + I+ + + +VA + + R L GAF +L+ S L + E Sbjct: 303 IFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLE 362 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQ+AMYL + Sbjct: 363 YTKHALAGLVHTEEVNMVNIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRD 422 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M S+P+I F RDHTT+LHA K+ K +E + K+ V +K+ ++ Sbjct: 423 MINESYPQIAAAFS-RDHTTILHAYDKITKEIEKNEETKRMVAEIKQKLT 471 >gi|167717462|ref|ZP_02400698.1| chromosomal replication initiation protein [Burkholderia pseudomallei DM98] Length = 381 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 44 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 98 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 99 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 158 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 159 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 218 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 219 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 273 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 274 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 332 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 333 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 379 >gi|152989754|ref|YP_001355476.1| chromosomal replication initiation protein [Nitratiruptor sp. SB155-2] gi|151421615|dbj|BAF69119.1| chromosome replication initiator protein DnaA [Nitratiruptor sp. SB155-2] Length = 443 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 241/459 (52%), Gaps = 45/459 (9%) Query: 46 LKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ Y + ++L F + +I P F+ W+K +Y I +LF+ + Sbjct: 10 LKEEIPKIEYERYIKQLSFDEDASKADIAVYKAPNLFVANWVKTKYKAKIAQLFELQTGI 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 VEIL S T K + K+ I + ++ + Sbjct: 70 ETSVEILT--------------------SDKKTATKKEKTLDTKEHIPSTTSTKINPTYT 109 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ GSSN+ A TAA S+AE Y NPLFI+ VGLGKTHLL AI N +IK+ Sbjct: 110 FENFVVGSSNQFAYTAALSVAEKPGKAY-----NPLFIYGGVGLGKTHLLHAIGNFNIKK 164 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 + V+Y T E FM F +R+ ++ R D+LLIDD+QFL GK Q EF H Sbjct: 165 EK--VVIYATIEQFMNDFTYHLRNKTIERFREKYRQCDILLIDDVQFLSGKERTQEEFFH 222 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N L + KQ+V +D+ P ++ L+ R++SR + G+ + + E + +I+K + + Sbjct: 223 TFNELHNDKKQIVLTSDQHPKKIAGLEDRLKSRFEWGLIADIQPPELETKIAIIKKKCEL 282 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN 402 +N+++E++ ++A + ++ RE++G +L ++++ ++ +I +L +++ Sbjct: 283 DG-----INLDDEIVNYIASHMDSNIREIEGVIIKL---NAYSSLVNQKITLDLAKNVL- 333 Query: 403 TGETKK-----MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 GE KK + ++DI VA NI +++ S R R +V R++ +YL++ +TP S Sbjct: 334 -GELKKEQQKNITLKDIVDAVASDLNIKPSEIKSKSRSRQIVNARRIVIYLARTLTPNSM 392 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 P + + FG +DHT+V HA++KV++M+E D K +++ L Sbjct: 393 PALAQFFGMKDHTSVSHAMKKVKEMIEKDANFKLKIDEL 431 >gi|121606999|ref|YP_984328.1| chromosomal replication initiation protein [Polaromonas naphthalenivorans CJ2] gi|120595968|gb|ABM39407.1| chromosomal replication initiator protein DnaA [Polaromonas naphthalenivorans CJ2] Length = 465 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 140/423 (33%), Positives = 222/423 (52%), Gaps = 29/423 (6%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS-----VEKTASSPSI 128 + V F W++ +Y I LF++ + +E+ + P V K + + Sbjct: 50 VQVGNRFKLDWVRAQYAARIAALFEQLSGQRIPIELALAPREAPVKSELVVRKFERAAGV 109 Query: 129 TKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 +L+ + T ++ F + L+S F T IEG++NR+ AA +A Sbjct: 110 AELASVGTP---------EEAAGSAFKNRLNSALTFDTLIEGTANRMGRAAALHVASSLG 160 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 Y NPLFI+ VGLGKTHL+ AI N + P +V+Y+ AE F+ A + Sbjct: 161 QLY-----NPLFIYGGVGLGKTHLMHAIGNKLMADNPAAKVLYIHAEQFVSDVVKAYQRK 215 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + K+ ++DLLLIDD+QFL K Q EF + +LL +V +D P L Sbjct: 216 TFDDFKERYHSLDLLLIDDVQFLANKDRTQEEFFNAFEALLTKKSHIVMTSDTYPKGLAD 275 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 + R+ SR G++V + + EMR +IL I + + + EEV VA+ V ++ Sbjct: 276 IHERLVSRFDSGLTVAIEPPELEMRVAIL-----IRKADADGAVLPEEVAFFVAKNVRSN 330 Query: 368 GRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA ++ F+ ++ ++A E L L++ + +++ +E+IQ+ VA +Y I Sbjct: 331 VRELEGALRKIQAYSRFSHKEISIQLAREALRDLLSI-QNRQISVENIQKTVANYYKIKV 389 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV--EKMLE 484 D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ E+ L Sbjct: 390 ADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKMAAERQLM 449 Query: 485 TDI 487 T++ Sbjct: 450 TEL 452 >gi|300742656|ref|ZP_07072677.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa M567] gi|300381841|gb|EFJ78403.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa M567] Length = 553 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 131/349 (37%), Positives = 199/349 (57%), Gaps = 21/349 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F TF+ G SNR A AA +++E + Y NPLFI+ GLGKTHLL AI Sbjct: 211 LNPNYTFDTFVIGQSNRFAHAAAFAVSESPAQAY-----NPLFIYGDSGLGKTHLLHAIG 265 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + P+LRV Y+ +E F F ++IRD+ + K RN+D+LLIDD+QFL GK Sbjct: 266 HYAKHLFPSLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDMLLIDDIQFLAGKEHT 325 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQVV +D PP +L R+RSR + G+ + + E R +IL Sbjct: 326 QEEFFHTFNALHNHQKQVVITSDLPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAIL 385 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-----PILTAE 391 + + +Q E LN+ ++V+ ++A +T + REL+GA L+ +FA P+ A Sbjct: 386 RKK---AQSE--SLNVPDDVMEYIASHITANIRELEGA---LIRVTAFASLNKQPVDVA- 436 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ +L L+ ++ + A +++++ DL S R RT+ RQ+AMYL + Sbjct: 437 LAEVVLKDLITDAGDAEITSGQVLATTASYFDVTLEDLRSKSRTRTLTNARQIAMYLLRE 496 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 +T S P IG+ G RDHTTV+HAVRKV +M E T + +L ++ Sbjct: 497 LTDMSLPRIGQELGGRDHTTVMHAVRKVGAQMAERRTTFNQVTDLTNKI 545 >gi|325139557|gb|EGC62097.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis CU385] Length = 522 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 186 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 240 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 241 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 300 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 301 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 360 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 361 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDIDLAR 415 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 416 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 473 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 474 TLSLPSIGDSFGGRDHTTVMHGIRAVSKLREEDPELAQDYEKLLILI 520 >gi|325066321|ref|ZP_08124994.1| chromosomal replication initiator protein DnaA [Actinomyces oris K20] Length = 559 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 197/355 (55%), Gaps = 24/355 (6%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ R+ F T++ GSSNR A A ++AE + Y NPLFI+ GLGKTHLL A Sbjct: 210 SQLNPRYTFDTYVTGSSNRFAHATALAVAEAPARAY-----NPLFIYGGSGLGKTHLLHA 264 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQF 270 I + + P +RV Y+ +E F+ F + +RD + K R +D+LL+DD+QF Sbjct: 265 IGHYAQTLNPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQF 324 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQGK EF H NSL S KQVV +D+PP L LD R+RSR + G+ + D Sbjct: 325 LQGKESTLEEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDL 384 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL + L++ +VL ++A +TT+ REL+GA L+ +FA + Sbjct: 385 ETRIAILSRKGTAE-----GLDLPFDVLEYIASRITTNIRELEGA---LIRVTAFASLNK 436 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A+ +L +++ E +++ I A ++ I+ +DL S R RT+V R +A Sbjct: 437 QPVDQTLAEMVLKDIISDPEGQEITTSLIMAQTADYFGITIDDLCSANRSRTMVSARHIA 496 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK-MLETDITLKKEVELLKRL 499 MYL + +T S P+IGR FG RDHTTV+ A +K+ M E T + EL R+ Sbjct: 497 MYLCRELTDLSLPKIGREFGGRDHTTVMSADKKIRTLMAERRSTFNQVTELTSRI 551 >gi|298243778|ref|ZP_06967585.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] gi|297556832|gb|EFH90696.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] Length = 514 Score = 216 bits (549), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 127/342 (37%), Positives = 196/342 (57%), Gaps = 14/342 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TFI G+SNR+A A+ ++AE Y NPLF++ VGLGKTHLL AI Sbjct: 179 LNPRYSFDTFIVGNSNRLAHAASLAVAEAPGESY-----NPLFLYGGVGLGKTHLLHAIG 233 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + Q L V+Y+++E F +AIR + R++D+LL+DD+QF+ GK Sbjct: 234 QQGV--QTGLAVLYVSSEQFTNEIINAIRYRTTEEFRAKYRSVDILLVDDIQFIAGKEST 291 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 + EF H NSL + +KQ+V +DRPP + SL+ R+RSR + G+ + D E R +IL Sbjct: 292 EEEFFHTFNSLHEMSKQIVICSDRPPKAIASLEERLRSRFEWGLVADIQPPDLETRMAIL 351 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 + + P +E++ ++A V T+ REL+G N+L+ + LT ++A Sbjct: 352 RVKADALHYRVP-----DEIISYIAGRVQTNIRELEGCLNRLMAYQQLHRVDLTLDVARA 406 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +S L + I + VA +Y +S + S +R + +V PRQVAMYL + T Sbjct: 407 AMSSLGADHRETHLDGRQIAQAVADYYRVSFEAMCSKQRDKHIVAPRQVAMYLIRQETQI 466 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 S EIG+ FG RDH+TVLHA K+E+ L+ + TL+++V ++ Sbjct: 467 SLFEIGQLFGKRDHSTVLHACEKIERNLKQNPTLRQDVSTIR 508 >gi|261378191|ref|ZP_05982764.1| DNA replication initiator protein [Neisseria cinerea ATCC 14685] gi|269145660|gb|EEZ72078.1| DNA replication initiator protein [Neisseria cinerea ATCC 14685] Length = 515 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 179 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 233 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 234 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 293 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 294 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 353 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 354 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDIDLAR 408 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 409 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 466 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 467 TLSLPSIGDSFGGRDHTTVMHGIRAVSKLREEDPELAQDYEKLLILI 513 >gi|22298146|ref|NP_681393.1| chromosomal replication initiation protein [Thermosynechococcus elongatus BP-1] gi|38257592|sp|Q8DL93|DNAA_THEEB RecName: Full=Chromosomal replication initiator protein DnaA gi|22294325|dbj|BAC08155.1| chromosomal replication initiator protein [Thermosynechococcus elongatus BP-1] Length = 453 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 140/459 (30%), Positives = 236/459 (51%), Gaps = 38/459 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + E ++ + RL+ + + +W + S + + P F + W++ YL+TI Sbjct: 4 SAEDLWHQILERLQLLLSRPTFETWIKTATVQSFDGQTLTICTPNPFARNWLQKYYLKTI 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + +E + +E+ + A + S P G+ +P Sbjct: 64 ADVAREIVGKPVEIELAIAQGA-------------------EHDTSIRPTSRGEVEATPP 104 Query: 154 F----GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 GS L+ ++VFS ++ G +NR+A A ++AE + NPLF+ VGLGK Sbjct: 105 AARHRGSELNPKYVFSRYVVGPNNRMAHAACLAVAESPGREF-----NPLFLCGGVGLGK 159 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ PN ++ Y++ E F +AIR + + ++ R +D++L+DD+Q Sbjct: 160 THLMQAIGHYRLEIDPNAKIFYVSTEQFTNDLIAAIRKDSMQSFREHYRAVDVMLVDDIQ 219 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ KQVV A+DRPPS++ L R+ SR G+ + D Sbjct: 220 FIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIADIQPPD 279 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + E + + EV+ ++A + T++ REL+GA + V S + + Sbjct: 280 LETRMAILQKK-----AEYENIRLPREVIEYIAASYTSNIRELEGALIRAVAYISISGLP 334 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E +LS V ET E I ++V++ N+ +DL N R R + RQV MY Sbjct: 335 MTVENIAPVLSPTVRKIETSP---EIILKVVSEALNVPISDLKGNSRRREISMARQVGMY 391 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 L + T S P+IG FG +DHTTV+++ KV ++ TD Sbjct: 392 LMRQYTGLSLPKIGEEFGGKDHTTVMYSCDKVAELQRTD 430 >gi|269214503|ref|ZP_05986706.2| replication initiation protein DnaA [Neisseria lactamica ATCC 23970] gi|269209657|gb|EEZ76112.1| replication initiation protein DnaA [Neisseria lactamica ATCC 23970] Length = 559 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 202/347 (58%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 223 LSRDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 277 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 278 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 337 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 338 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 397 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 398 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 452 Query: 395 ELLSHLVNTGETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ D I VAK+Y+I +D+L +R R++ RPRQVAM LSK +T Sbjct: 453 TALQDII--AEKHKVITADLIIDAVAKYYHIRISDILGKKRTRSLARPRQVAMTLSKELT 510 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+HA+R V + E D L ++ E L LI Sbjct: 511 TMSLPAIGDAFGGRDHTTVMHAIRAVTSLREEDPELNQDYEKLLILI 557 >gi|167620899|ref|ZP_02389530.1| chromosomal replication initiation protein [Burkholderia thailandensis Bt4] Length = 401 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 64 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 118 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 119 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 178 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 179 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 238 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 239 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 293 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 294 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 352 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 353 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 399 >gi|167582970|ref|ZP_02375844.1| chromosomal replication initiation protein [Burkholderia thailandensis TXDOH] Length = 392 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 55 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 109 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 110 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 169 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 170 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 229 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 230 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 284 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 285 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 343 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 344 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 390 >gi|161869312|ref|YP_001598479.1| chromosomal replication initiation protein [Neisseria meningitidis 053442] gi|161594865|gb|ABX72525.1| chromosomal replication initiator protein [Neisseria meningitidis 053442] Length = 468 Score = 216 bits (549), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QAI Sbjct: 132 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAIG 186 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 187 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 246 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 247 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 306 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 307 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 361 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 362 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 419 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 420 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 466 >gi|309379508|emb|CBX21874.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 551 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 202/347 (58%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 215 LSRDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 269 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 270 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 329 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 330 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 389 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 390 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 444 Query: 395 ELLSHLVNTGETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ D I VAK+Y+I +D+L +R R++ RPRQVAM LSK +T Sbjct: 445 TALQDII--AEKHKVITADLIIDAVAKYYHIRISDILGKKRTRSLARPRQVAMTLSKELT 502 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+HA+R V + E D L ++ E L LI Sbjct: 503 TMSLPAIGDAFGGRDHTTVMHAIRAVTSLREEDPELNQDYEKLLILI 549 >gi|167834929|ref|ZP_02461812.1| chromosomal replication initiation protein [Burkholderia thailandensis MSMB43] Length = 412 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 75 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 129 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 130 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 189 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 190 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 249 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 250 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 304 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 305 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 363 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 364 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 410 >gi|15677734|ref|NP_274897.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis MC58] gi|14194678|sp|Q9JXS7|DNAA_NEIMB RecName: Full=Chromosomal replication initiator protein DnaA gi|7227160|gb|AAF42233.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis MC58] gi|316985519|gb|EFV64466.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis H44/76] gi|325133542|gb|EGC56205.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M13399] gi|325206810|gb|ADZ02263.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M04-240196] Length = 518 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|332976004|gb|EGK12875.1| DNA-directed DNA replication initiator protein DnaA [Psychrobacter sp. 1501(2011)] Length = 469 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 143/467 (30%), Positives = 245/467 (52%), Gaps = 35/467 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF-QEEHSRI 104 L+ Q+ + + W + L V+ + + L P + ++ + I +L Q + I Sbjct: 15 LRYQLKENEFTMWLRPLS-AKVVGDKLELLAPNQYFVTHVQENHFAAIEQLAKQHSNGEI 73 Query: 105 QGVEILVRSVALP-----SVEKTAS-------SPSITKLSPINTNISKSPIILGKQTISP 152 V I V S P +V++ S S S+T+ N+S + + +++S Sbjct: 74 SQVVIKVESSVQPAPQDSTVDRNTSNGHHNRGSASMTQGLDSEGNLSDAAQMASDKSLSY 133 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + + F F TF+ G SN +A A Q + + S R NPLF++ + GLGKTHL Sbjct: 134 I-----NPYFTFETFVSGKSNMLAYKACQELGKKQSQN----RHNPLFLYGASGLGKTHL 184 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + ++A+ +K Y ++E F+ + A+R+ K ++ +DLL+IDD+ L Sbjct: 185 MHSVAHKYLKIGKTF--YYFSSEKFINQLVYALRNQKIEQFKRKIKRVDLLIIDDVHVLA 242 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK EF L + KQV+ A+DR PS++ D R RSR G++V + + E Sbjct: 243 GKNKSSSEFLSLFADFMVEGKQVILASDRHPSQMTEFDERFRSRFSSGLAVSIEPPEMET 302 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R IL+ + ++S E PK E + +A+ V ++ R L+GA NQ+V + PI Sbjct: 303 RMQILQKKASLSGVELPK-----ECALFIAQNVVSNVRRLEGALNQVVANANLTGNPI-D 356 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++ L ++ ++ + +++I+++VA++Y++S DL+S +R R++ RPRQ+AM L+ Sbjct: 357 LDMVQYALKDVIAI-RSQAVSMDNIRKVVAEYYDVSVKDLMSKKRTRSIARPRQIAMALA 415 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 + +T SFP+IG+ FG RDHTTV+HA KV ++ D L KE + L Sbjct: 416 RELTKDSFPDIGQSFGGRDHTTVMHACDKVAQLRSEDPVLDKEYKAL 462 >gi|254414409|ref|ZP_05028175.1| chromosomal replication initiator protein DnaA [Microcoleus chthonoplastes PCC 7420] gi|196178639|gb|EDX73637.1| chromosomal replication initiator protein DnaA [Microcoleus chthonoplastes PCC 7420] Length = 461 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/478 (30%), Positives = 251/478 (52%), Gaps = 33/478 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ E ++ V RL+ Q+ + +W + + N + + P F + W++ Y+ Sbjct: 1 MEMSPEQLWIQVLERLQFQLSRPTFETWLKGTTAQQLDQNCLVVCTPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-PIILGKQT 149 +TIT + QE I G + + + + T S +T IS S P+ T Sbjct: 61 KTITDVVQE----ILGQSVDIYLTVITDNDNTTIS---------DTGISWSVPVAANPDT 107 Query: 150 ISPVFGSP----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 P P L+ ++VFS F+ GS+NR+A AA ++AE + NPLF+ V Sbjct: 108 ERPSHQLPKPTELNQKYVFSRFVVGSNNRMAHAAALAVAESPGREF-----NPLFLCGGV 162 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAIA+ + PN ++ Y++ E+F +AIR + + ++ R ++LLI Sbjct: 163 GLGKTHLMQAIAHFRWENSPNSKIFYVSTEHFTNDLIAAIRKDSMQSFREHYRAAEVLLI 222 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF++GK Q EF H N+L ++ KQ+V A+DRPP ++ L R+ SR G+ + Sbjct: 223 DDIQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPHQISRLQERLCSRFSMGLIADI 282 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + E + + V+ ++A ++ REL+GA ++V ++ Sbjct: 283 QPPDLETRMAILQKK-----AEYENIRLPRSVVEYIATQYKSNIRELEGALIRVV---AY 334 Query: 385 APILTAEIADELLSHLVNT-GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 I ++ E ++ ++N T + E I VA +N+S DL N R R + RQ Sbjct: 335 ISISGVPMSVENIAPILNPRTPTVQAAPEIIVTTVADAFNVSVEDLKGNSRRREISWSRQ 394 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AMYL + T S P IG FG +DHTTV+++ K+ ++ E D ++ +++ L I+ Sbjct: 395 IAMYLMRQHTDLSLPRIGEEFGGKDHTTVMYSCDKITQLRERDPSVAQKLSQLSDRIN 452 >gi|167892200|ref|ZP_02479602.1| chromosomal replication initiation protein [Burkholderia pseudomallei 7894] Length = 397 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 60 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 114 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 115 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 174 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 175 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 234 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 235 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 289 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 290 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 348 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 349 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 395 >gi|167843721|ref|ZP_02469229.1| chromosomal replication initiation protein [Burkholderia pseudomallei B7210] gi|167908929|ref|ZP_02496020.1| chromosomal replication initiation protein [Burkholderia pseudomallei 112] Length = 389 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 52 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 106 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 107 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 166 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 167 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 226 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 227 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 281 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 282 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 340 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 341 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 387 >gi|167822116|ref|ZP_02453587.1| chromosomal replication initiation protein [Burkholderia pseudomallei 9] Length = 386 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 49 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 103 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 104 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 163 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 164 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 223 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 224 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 278 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 279 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 337 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 338 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 384 >gi|167813575|ref|ZP_02445255.1| chromosomal replication initiation protein [Burkholderia pseudomallei 91] Length = 391 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 54 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 108 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 109 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 168 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 169 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 228 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 229 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 283 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 284 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 342 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 343 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 389 >gi|149194732|ref|ZP_01871827.1| chromosomal replication initiation protein [Caminibacter mediatlanticus TB-2] gi|149135155|gb|EDM23636.1| chromosomal replication initiation protein [Caminibacter mediatlanticus TB-2] Length = 435 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 147/474 (31%), Positives = 243/474 (51%), Gaps = 57/474 (12%) Query: 38 IFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETI 93 IF + +LK NQV Y + ++L+F N HL + P F+ ++K Y + I Sbjct: 2 IFDKIKQKLKSENQVN---YNKFIKKLEFDEDSSNSNHLVIKAPNIFIANYVKRNYSKKI 58 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++++EE +EI+ + + + E I+TN S S +I Sbjct: 59 AEIYKEETGIEANLEIITKDIKHINYES----------ENISTNTSPSILI--------- 99 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + F +FI G SN+ A +AA+S+AE Y NPLFI+ VGLGKTHL+ Sbjct: 100 ------PEYTFESFIVGPSNQFAYSAAKSVAENPGKNY-----NPLFIYGGVGLGKTHLI 148 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N R L V+Y+T+E FM F +R+ + R+ D+LLIDD+QF G Sbjct: 149 QAIGNYLKNR---LNVIYVTSEQFMNEFRENVRNQTMDRFHEKYRSCDVLLIDDVQFFAG 205 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N L + KQ+ ADRPP +L+ L R+RSR + G+ + + E + Sbjct: 206 KEQTQEEFFHTFNELYNQKKQICLTADRPPKKLQDLVDRLRSRFEAGLIADIQPPELETK 265 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL---- 388 I+K + ++ + + ++V+ +A + + RE++G +L ++ A +L Sbjct: 266 IEIIKKKCELNG-----IYLPDDVIEFIATKLDDNIREIEGMIVKL---NAMAKLLGVSD 317 Query: 389 -TAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 T + A + L H+ + E + ++DI ++AK +NI ++++S R + +V R+ A+ Sbjct: 318 ITIDFAKQTLKEHIKDKKEN--ITLQDIIELIAKEFNIKPSEIISKSRNKNIVAARRTAI 375 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ T S P I + FG +DH+ V HA++ K L+ D + ++E LK I Sbjct: 376 YLAREFTKESTPAIAKYFGLKDHSAVSHAIKSFNKKLKEDNDFRIKIEELKNKI 429 >gi|123968156|ref|YP_001009014.1| chromosomal replication initiation protein [Prochlorococcus marinus str. AS9601] gi|166214692|sp|A2BQ46|DNAA_PROMS RecName: Full=Chromosomal replication initiator protein DnaA gi|123198266|gb|ABM69907.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. AS9601] Length = 464 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 146/468 (31%), Positives = 241/468 (51%), Gaps = 23/468 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P F W++ Y ETI K Sbjct: 7 IWAEVQQSLQKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCETIEKAA 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +E I G ++ V + + S+ ++ + F +P Sbjct: 67 KE----ICGHDVKVVFKSETNTSSDLSNEDKANEKNVHHKTRSFSSNNQNNSSKNQFKNP 122 Query: 158 --LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R+VF F+ G ++R+A AA ++AE + NPLFI VGLGKTHL+QA Sbjct: 123 NGLNLRYVFKRFVVGPNSRLAHAAALAVAESPGREF-----NPLFICGGVGLGKTHLMQA 177 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + ++ P +V Y++ E F S IR + ++D RN+DL+LIDD+QFL+GK Sbjct: 178 IGHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNVDLILIDDIQFLEGKE 237 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ + D E R + Sbjct: 238 YTQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMTADIQPPDLETRTA 297 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++++ +++ +A T++ REL+GAF + V S P+ I Sbjct: 298 ILQKK-----AEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVAFASITGLPMTVQSI 352 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L + V T K I V+ + +S ++L+S+ R + V + RQ+ MYL + Sbjct: 353 APMLDPNSVGVVVTPKQVINK----VSDFFKVSTDELISSSRRKPVSQARQIGMYLMRHG 408 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IG FG +DHTTV++A+ +VEK L D + +V+ ++ L+ Sbjct: 409 TDLSLPRIGDEFGGKDHTTVMYAIEQVEKKLSIDPNIASQVQKIRDLL 456 >gi|313669121|ref|YP_004049405.1| chromosomal replication initiator protein [Neisseria lactamica ST-640] gi|313006583|emb|CBN88048.1| putative chromosomal replication initiator protein [Neisseria lactamica 020-06] Length = 523 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 202/347 (58%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 187 LSRDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 241 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 242 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 301 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 302 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 361 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 362 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 416 Query: 395 ELLSHLVNTGETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ D I VAK+Y+I +D+L +R R++ RPRQVAM LSK +T Sbjct: 417 TALQDII--AEKHKVITADLIIDAVAKYYHIRISDILGKKRTRSLARPRQVAMTLSKELT 474 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+HA+R V + E D L ++ E L LI Sbjct: 475 TMSLPAIGDAFGGRDHTTVMHAIRAVTSLREEDPELNQDYEKLLILI 521 >gi|307705907|ref|ZP_07642745.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK597] gi|307620568|gb|EFN99666.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK597] Length = 453 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQNEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKI 452 >gi|209515897|ref|ZP_03264759.1| chromosomal replication initiator protein DnaA [Burkholderia sp. H160] gi|209503745|gb|EEA03739.1| chromosomal replication initiator protein DnaA [Burkholderia sp. H160] Length = 387 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 50 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 104 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 105 IGNQLLMDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 164 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 165 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 224 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + +++NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 225 IL-----MRKAQSEFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 279 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 280 KEALKDLL-TVQNRQISVENIQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELT 338 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 339 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 385 >gi|167900712|ref|ZP_02487917.1| chromosomal replication initiation protein [Burkholderia pseudomallei NCTC 13177] Length = 408 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 71 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 125 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 126 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 185 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 186 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 245 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 246 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 300 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 301 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 359 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 360 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 406 >gi|320532814|ref|ZP_08033591.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 171 str. F0337] gi|320134965|gb|EFW27136.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 171 str. F0337] Length = 533 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 197/355 (55%), Gaps = 24/355 (6%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ R+ F T++ GSSNR A A ++AE + Y NPLFI+ GLGKTHLL A Sbjct: 184 SQLNPRYTFDTYVTGSSNRFAHATALAVAEAPARAY-----NPLFIYGGSGLGKTHLLHA 238 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQF 270 I + + P +RV Y+ +E F+ F + +RD + K R +D+LL+DD+QF Sbjct: 239 IGHYAQTLNPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQF 298 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQGK EF H NSL S KQVV +D+PP L LD R+RSR + G+ + D Sbjct: 299 LQGKESTLEEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDL 358 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL + L++ +VL ++A +TT+ REL+GA L+ +FA + Sbjct: 359 ETRIAILSRKGTAE-----GLDLPFDVLEYIASRITTNIRELEGA---LIRVTAFASLNK 410 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A+ +L +++ E +++ I A ++ I+ +DL S R RT+V R +A Sbjct: 411 QPVDQTLAEMVLKDIISDPEGQEITTSLIMAQTADYFGITIDDLCSANRSRTMVSARHIA 470 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK-MLETDITLKKEVELLKRL 499 MYL + +T S P+IGR FG RDHTTV+ A +K+ M E T + EL R+ Sbjct: 471 MYLCRELTDLSLPKIGREFGGRDHTTVMSADKKIRTLMAERRSTFNQVTELTSRI 525 >gi|254670914|emb|CBA07496.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha153] Length = 518 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|322377905|ref|ZP_08052393.1| replication initiation protein DnaA [Streptococcus sp. M334] gi|321281081|gb|EFX58093.1| replication initiation protein DnaA [Streptococcus sp. M334] Length = 453 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQNEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKI 452 >gi|218767523|ref|YP_002342035.1| chromosomal replication initiation protein [Neisseria meningitidis Z2491] gi|14194677|sp|Q9JW45|DNAA_NEIMA RecName: Full=Chromosomal replication initiator protein DnaA gi|121051531|emb|CAM07828.1| putative chromosomal replication initiator protein [Neisseria meningitidis Z2491] gi|308389997|gb|ADO32317.1| putative chromosomal replication initiator protein [Neisseria meningitidis alpha710] gi|319409787|emb|CBY90095.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis WUE 2594] Length = 518 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|241759452|ref|ZP_04757556.1| chromosomal replication initiator protein DnaA [Neisseria flavescens SK114] gi|241320234|gb|EER56567.1| chromosomal replication initiator protein DnaA [Neisseria flavescens SK114] Length = 522 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 199/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE GY NP F++ S GLGKTHL+QAI Sbjct: 186 LSRDYTFETLVEGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIG 240 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 241 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 300 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 301 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 360 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P + ++A Sbjct: 361 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPAIDMDLAR 415 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI AK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 416 TALQDII--AEKHKVITADIIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELT 473 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 474 TLSLPSIGDAFGGRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILI 520 >gi|225855736|ref|YP_002737247.1| chromosomal replication initiation protein [Streptococcus pneumoniae P1031] gi|254777919|sp|C1CN66|DNAA_STRZP RecName: Full=Chromosomal replication initiator protein DnaA gi|225725753|gb|ACO21605.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae P1031] Length = 453 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKI 452 >gi|2109445|gb|AAC45336.1| initiator protein [Streptococcus pneumoniae] Length = 453 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKI 452 >gi|15899950|ref|NP_344554.1| chromosomal replication initiation protein [Streptococcus pneumoniae TIGR4] gi|148993607|ref|ZP_01823078.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP9-BS68] gi|149007716|ref|ZP_01831325.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP18-BS74] gi|168487221|ref|ZP_02711729.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1087-00] gi|168489313|ref|ZP_02713512.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP195] gi|168576111|ref|ZP_02722016.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae MLV-016] gi|194398133|ref|YP_002036722.1| chromosomal replication initiation protein [Streptococcus pneumoniae G54] gi|225857810|ref|YP_002739320.1| chromosomal replication initiation protein [Streptococcus pneumoniae 70585] gi|307126152|ref|YP_003878183.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae 670-6B] gi|18266737|sp|O08397|DNAA_STRPN RecName: Full=Chromosomal replication initiator protein DnaA gi|226735853|sp|B5E568|DNAA_STRP4 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777915|sp|C1C982|DNAA_STRP7 RecName: Full=Chromosomal replication initiator protein DnaA gi|14971465|gb|AAK74194.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae TIGR4] gi|147760711|gb|EDK67683.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP18-BS74] gi|147927828|gb|EDK78850.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP9-BS68] gi|183569905|gb|EDT90433.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1087-00] gi|183572228|gb|EDT92756.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP195] gi|183578101|gb|EDT98629.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae MLV-016] gi|194357800|gb|ACF56248.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae G54] gi|225721516|gb|ACO17370.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae 70585] gi|306483214|gb|ADM90083.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae 670-6B] gi|332071323|gb|EGI81818.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA17545] gi|332071685|gb|EGI82178.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA17570] gi|332199068|gb|EGJ13149.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA47901] Length = 453 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKI 452 >gi|298501757|ref|YP_003723697.1| chromosomal replication initiation protein [Streptococcus pneumoniae TCH8431/19A] gi|298237352|gb|ADI68483.1| chromosomal replication initiation protein [Streptococcus pneumoniae TCH8431/19A] Length = 432 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 88 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 142 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 143 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 202 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 203 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 262 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 263 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 317 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 318 ITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 377 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 378 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKI 431 >gi|296314155|ref|ZP_06864096.1| DNA replication initiator protein [Neisseria polysaccharea ATCC 43768] gi|296839190|gb|EFH23128.1| DNA replication initiator protein [Neisseria polysaccharea ATCC 43768] Length = 518 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|15902045|ref|NP_357595.1| chromosomal replication initiation protein [Streptococcus pneumoniae R6] gi|116516053|ref|YP_815417.1| chromosomal replication initiation protein [Streptococcus pneumoniae D39] gi|148984545|ref|ZP_01817833.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP3-BS71] gi|148988886|ref|ZP_01820301.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP6-BS73] gi|148997957|ref|ZP_01825470.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP11-BS70] gi|149013383|ref|ZP_01834092.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP19-BS75] gi|149020159|ref|ZP_01835133.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP23-BS72] gi|168484307|ref|ZP_02709259.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1873-00] gi|168491771|ref|ZP_02715914.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC0288-04] gi|168493999|ref|ZP_02718142.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC3059-06] gi|169832473|ref|YP_001693435.1| chromosomal replication initiation protein [Streptococcus pneumoniae Hungary19A-6] gi|182682971|ref|YP_001834718.1| chromosomal replication initiation protein [Streptococcus pneumoniae CGSP14] gi|221230949|ref|YP_002510101.1| chromosomal replication initiator protein [Streptococcus pneumoniae ATCC 700669] gi|225853612|ref|YP_002735124.1| chromosomal replication initiation protein [Streptococcus pneumoniae JJA] gi|237651054|ref|ZP_04525306.1| chromosomal replication initiation protein [Streptococcus pneumoniae CCRI 1974] gi|237821167|ref|ZP_04597012.1| chromosomal replication initiation protein [Streptococcus pneumoniae CCRI 1974M2] gi|298229492|ref|ZP_06963173.1| chromosomal replication initiation protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255938|ref|ZP_06979524.1| chromosomal replication initiation protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|303254902|ref|ZP_07340987.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS455] gi|303259727|ref|ZP_07345703.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP-BS293] gi|303262194|ref|ZP_07348139.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS292] gi|303265390|ref|ZP_07351297.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS397] gi|303266062|ref|ZP_07351956.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS457] gi|303268470|ref|ZP_07354264.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS458] gi|307066637|ref|YP_003875603.1| DNA replication initiation ATPase [Streptococcus pneumoniae AP200] gi|38257595|sp|Q8DRQ4|DNAA_STRR6 RecName: Full=Chromosomal replication initiator protein DnaA gi|122279578|sp|Q04N63|DNAA_STRP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735854|sp|B1I6X3|DNAA_STRPI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735855|sp|B2IQY9|DNAA_STRPS RecName: Full=Chromosomal replication initiator protein DnaA gi|254777916|sp|B8ZJH9|DNAA_STRPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|254777918|sp|C1CH81|DNAA_STRZJ RecName: Full=Chromosomal replication initiator protein DnaA gi|15457529|gb|AAK98805.1| DNA biosynthesis, initiation, binding protein [Streptococcus pneumoniae R6] gi|116076629|gb|ABJ54349.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae D39] gi|147755967|gb|EDK63010.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP11-BS70] gi|147762906|gb|EDK69854.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP19-BS75] gi|147923322|gb|EDK74436.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP3-BS71] gi|147925697|gb|EDK76773.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP6-BS73] gi|147930837|gb|EDK81818.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP23-BS72] gi|168994975|gb|ACA35587.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae Hungary19A-6] gi|172042405|gb|EDT50451.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1873-00] gi|182628305|gb|ACB89253.1| chromosomal replication initiation protein [Streptococcus pneumoniae CGSP14] gi|183573942|gb|EDT94470.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC0288-04] gi|183576010|gb|EDT96538.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC3059-06] gi|220673409|emb|CAR67867.1| chromosomal replication initiator protein [Streptococcus pneumoniae ATCC 700669] gi|225723669|gb|ACO19522.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae JJA] gi|301799150|emb|CBW31662.1| chromosomal replication initiator protein [Streptococcus pneumoniae OXC141] gi|301800974|emb|CBW33635.1| chromosomal replication initiator protein [Streptococcus pneumoniae INV200] gi|302598173|gb|EFL65234.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS455] gi|302636834|gb|EFL67324.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS292] gi|302639279|gb|EFL69738.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP-BS293] gi|302641971|gb|EFL72324.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS458] gi|302644366|gb|EFL74619.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS457] gi|302645067|gb|EFL75307.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS397] gi|306408174|gb|ADM83601.1| ATPase involved in DNA replication initiation [Streptococcus pneumoniae AP200] gi|332077808|gb|EGI88267.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA41301] gi|332198865|gb|EGJ12947.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA47368] Length = 453 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKI 452 >gi|254804280|ref|YP_003082501.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha14] gi|254667822|emb|CBA03812.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha14] gi|261393234|emb|CAX50857.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis 8013] gi|325204854|gb|ADZ00308.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240355] Length = 518 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|167916970|ref|ZP_02504061.1| chromosomal replication initiation protein [Burkholderia pseudomallei BCC215] gi|238561943|ref|ZP_00441124.2| chromosomal replication initiator protein DnaA [Burkholderia mallei GB8 horse 4] gi|238523506|gb|EEP86944.1| chromosomal replication initiator protein DnaA [Burkholderia mallei GB8 horse 4] Length = 406 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 69 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 123 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 124 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 183 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 184 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 243 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 244 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 298 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 299 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 357 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 358 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 404 >gi|167736497|ref|ZP_02409271.1| chromosomal replication initiation protein [Burkholderia pseudomallei 14] Length = 385 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 48 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 102 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 103 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 162 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 163 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 222 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 223 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 277 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 278 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 336 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 337 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 383 >gi|330814957|ref|YP_004358662.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] gi|327367350|gb|AEA58706.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] Length = 527 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/361 (36%), Positives = 203/361 (56%), Gaps = 22/361 (6%) Query: 151 SPVFGSPLDSRF---------VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 +P G DS + F F+ G +N++A AA +A D+ G V NPLF+ Sbjct: 176 APAGGDAADSTYERSKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---VSYNPLFL 230 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ AI N + + R+ Y+ AE ++ A + + K ++D Sbjct: 231 YGGVGLGKTHLIHAIGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLD 290 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G+ Sbjct: 291 LLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGL 350 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + +Q E +N++E+V VA+ + ++ REL+GA +++ Sbjct: 351 TVAIEPPELEMRVAILMRK---AQSEG--VNLSEDVAFFVAKHLRSNVRELEGALRKILA 405 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F +T E+ E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + Sbjct: 406 YSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIA 464 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ Sbjct: 465 RPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQT 524 Query: 500 I 500 + Sbjct: 525 L 525 >gi|295675102|ref|YP_003603626.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1002] gi|295434945|gb|ADG14115.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1002] Length = 532 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 195 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 249 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 250 IGNQLLMDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 309 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 310 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 369 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +++NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 370 ILMRK---AQSE--FVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 424 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 425 KEALKDLL-TVQNRQISVENIQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELT 483 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 484 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 530 >gi|294794203|ref|ZP_06759339.1| ATPase involved in DNA replication initiation [Veillonella sp. 3_1_44] gi|294454533|gb|EFG22906.1| ATPase involved in DNA replication initiation [Veillonella sp. 3_1_44] Length = 474 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 199/350 (56%), Gaps = 10/350 (2%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ A Sbjct: 128 SNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDY-----NPLFIYGPSGLGKTHLMHA 182 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I NA + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + Sbjct: 183 IGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESRE 242 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 + E + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R + Sbjct: 243 STKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIA 302 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA---E 391 I ++ L K++ + I+ + + +VA + + R L GAF +L+ S L + E Sbjct: 303 IFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLE 362 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQ+AMYL + Sbjct: 363 YTKHALAGLVHTEEVNIVNIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRD 422 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M S+P+I F RDHTT+LHA K+ K +E + K+ V +K+ ++ Sbjct: 423 MINESYPQIAAAFS-RDHTTILHAYDKITKEIEKNEETKRMVAEIKQKLT 471 >gi|294507379|ref|YP_003571437.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] gi|294343707|emb|CBH24485.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] Length = 564 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 197/339 (58%), Gaps = 14/339 (4%) Query: 162 FVFSTFIEGSSNRVALTAAQSIA-EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 + F F+EG NR+A +AA ++A E S Y NPL ++ VGLGKTHL QA+AN + Sbjct: 225 YTFDEFVEGDGNRLARSAAFAVAQEPGSTNY-----NPLLVYGGVGLGKTHLAQAVANYA 279 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 ++ RV+Y++++ F +F ++R+N R DLL++DD+QF K Q E Sbjct: 280 LEHNTAERVLYVSSDRFTSQFVQSVRENRIAAFSSYYRQADLLIVDDVQFFGEKEKTQEE 339 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H+ N L + KQ+ ADRPP+E+ ++ R+ SR Q G+S + D E R +IL+ + Sbjct: 340 FFHIFNDLHQNGKQIFLCADRPPAEIPGIEERLLSRFQWGLSADIQRPDLETRIAILQRK 399 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLS 398 A ++D + ++ +VL +A+ + ++ R+L+GA +L L + A L Sbjct: 400 AA---RQD--IAVSPDVLELIAQRIDSNVRQLEGALTRLTALVQLDDRTLDLDTARRFLR 454 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + G + +DI VA+++ + + DLLS R +TV + RQ+AMYL + +T S+ Sbjct: 455 EHTDEG-ADALNADDIIEQVAEYFRLEKGDLLSRSRKQTVAQARQIAMYLCRELTDESYD 513 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 IG RFG RDH+TV+HA RK+E+ LE+D L+ ++ L+ Sbjct: 514 HIGSRFGGRDHSTVIHAYRKIEEDLESDTELQDDISSLQ 552 >gi|53724901|ref|YP_101862.1| chromosomal replication initiation protein [Burkholderia mallei ATCC 23344] gi|52428324|gb|AAU48917.1| chromosomal replication initiator protein DnaA [Burkholderia mallei ATCC 23344] Length = 518 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 181 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 235 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 236 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 295 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 296 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 355 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 356 ILMRK---AQSEG--VSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 410 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 411 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 470 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 516 >gi|111658629|ref|ZP_01409279.1| hypothetical protein SpneT_02000219 [Streptococcus pneumoniae TIGR4] Length = 432 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 88 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 142 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 143 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 202 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 203 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 262 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 263 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 317 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 318 ITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 377 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 378 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKI 431 >gi|326772843|ref|ZP_08232127.1| DNA-directed DNA replication initiator protein [Actinomyces viscosus C505] gi|326637475|gb|EGE38377.1| DNA-directed DNA replication initiator protein [Actinomyces viscosus C505] Length = 601 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 133/355 (37%), Positives = 197/355 (55%), Gaps = 24/355 (6%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ R+ F T++ GSSNR A A ++AE + Y NPLFI+ GLGKTHLL A Sbjct: 252 SQLNPRYTFDTYVTGSSNRFAHATALAVAEAPARAY-----NPLFIYGGSGLGKTHLLHA 306 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQF 270 I + + P +RV Y+ +E F+ F + +RD + K R +D+LL+DD+QF Sbjct: 307 IGHYAQTLNPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQF 366 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQGK EF H NSL S KQVV +D+PP L LD R+RSR + G+ + D Sbjct: 367 LQGKESTLEEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDL 426 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL + L++ +VL ++A +TT+ REL+GA L+ +FA + Sbjct: 427 ETRIAILSRKGTAE-----GLDLPFDVLEYIASRITTNIRELEGA---LIRVTAFASLNK 478 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A+ +L +++ E +++ I A ++ I+ +DL S R RT+V R +A Sbjct: 479 QPVDQTLAEMVLKDIISDPEGQEITTSLIMAQTADYFGITIDDLCSANRSRTMVSARHIA 538 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK-MLETDITLKKEVELLKRL 499 MYL + +T S P+IGR FG RDHTTV+ A +K+ M E T + EL R+ Sbjct: 539 MYLCRELTDLSLPKIGREFGGRDHTTVMSADKKIRTLMAERRSTFNQVTELTSRI 593 >gi|313892203|ref|ZP_07825796.1| chromosomal replication initiator protein DnaA [Dialister microaerophilus UPII 345-E] gi|313119341|gb|EFR42540.1| chromosomal replication initiator protein DnaA [Dialister microaerophilus UPII 345-E] Length = 494 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 149/483 (30%), Positives = 255/483 (52%), Gaps = 44/483 (9%) Query: 52 PDVYASWFQRLKFHSVLHNIVHLSVPTN--FLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 P Y +++++ F S+L L++ T +L +WI+ Y + + E+ ++ + I Sbjct: 19 PQYYEMFYKKI-FPSLLDE-KELTIITQDPYLVSWIEALYKTKLETIISEKLNKPMKIVI 76 Query: 110 LVR-------SVALPSVEKTASSPSITKLSP--------INTNISKSPIIL------GKQ 148 L + S +P + P + ++ P IN + I+L KQ Sbjct: 77 LSKEDHEEKKSEKIPDFMEEEKLPLMDEVKPYSPPENILINIPKNSQDIVLPSIQNYSKQ 136 Query: 149 TI---SPVFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVD-SHGYTTVRLNPLFIH 202 T PV+ SP +++ F TF+ G+ N +A +A S+A++ + ++NPLFI+ Sbjct: 137 TKVKEKPVYKSPNPINTEHTFETFVHGNCNEMAFQSALSVAQMAVNMEEMDKKMNPLFIY 196 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL AI N + P+L +++++E F ++I+ N ++ RN D Sbjct: 197 GPSGLGKTHLLHAICNYIRENAPHLSYIFVSSETFTNELIASIKSNSMPKFREKYRNPDY 256 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF K + E + N+L D+ K ++ +DR PS++E L+ RI++R G+ Sbjct: 257 LLIDDVQFFGSKNSSKMEIFNTFNTLFDNKKHIILTSDRTPSDIEELEDRIQTRFSSGLI 316 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 VP+ DYE+ IL+ R ++KE +NI EV+ ++A + T+ RELDGAFN+LV Sbjct: 317 VPISPPDYEICSIILEKR---AEKEG--INIPSEVINYIAEHINTNVRELDGAFNKLV-- 369 Query: 382 HSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 ++A + +T E A E L + + +++ E I V +N+ + +LL R + Sbjct: 370 -TYAKVQKKEMTLEFAKETLKDQIPLEQNREITPEIIINTVCNKFNVKKENLLGKGRPKN 428 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V PRQ+AMYL + SFP + F +DH+T+L+A +VEK + D K+ +E L Sbjct: 429 IVIPRQIAMYLCRKELNLSFPILRDIFKRKDHSTILYACERVEKDIAKDNETKRIIEELS 488 Query: 498 RLI 500 ++ Sbjct: 489 NML 491 >gi|83719949|ref|YP_443733.1| chromosomal replication initiation protein [Burkholderia thailandensis E264] gi|123726547|sp|Q2STL6|DNAA_BURTA RecName: Full=Chromosomal replication initiator protein DnaA gi|83653774|gb|ABC37837.1| chromosomal replication initiator protein DnaA [Burkholderia thailandensis E264] Length = 536 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 199 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 253 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 254 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 313 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 314 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 373 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 374 ILMRK---AQSEG--VSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 428 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 429 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 487 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 488 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 534 >gi|83814277|ref|YP_445493.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] gi|83755671|gb|ABC43784.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] Length = 564 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 122/339 (35%), Positives = 197/339 (58%), Gaps = 14/339 (4%) Query: 162 FVFSTFIEGSSNRVALTAAQSIA-EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 + F F+EG NR+A +AA ++A E S Y NPL ++ VGLGKTHL QA+AN + Sbjct: 225 YTFDEFVEGDGNRLARSAAFAVAQEPGSTNY-----NPLLVYGGVGLGKTHLAQAVANYA 279 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 ++ RV+Y++++ F +F ++R+N R DLL++DD+QF K Q E Sbjct: 280 LEHNTAERVLYVSSDRFTSQFVQSVRENRIAAFSSYYRQADLLIVDDVQFFGEKEKTQEE 339 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H+ N L + KQ+ ADRPP+E+ ++ R+ SR Q G+S + D E R +IL+ + Sbjct: 340 FFHIFNDLHQNGKQIFLCADRPPAEIPGIEERLLSRFQWGLSADIQRPDLETRIAILQRK 399 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLS 398 A ++D + ++ +VL +A+ + ++ R+L+GA +L L + A L Sbjct: 400 AA---RQD--IAVSPDVLELIAQRIDSNVRQLEGALTRLTALVQLDDRTLDLDTARRFLR 454 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + G + +DI VA+++ + + DLLS R +TV + RQ+AMYL + +T S+ Sbjct: 455 EHTDEG-ADALNADDIIEQVAEYFRLEKGDLLSRSRKQTVAQARQIAMYLCRELTDESYD 513 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 IG RFG RDH+TV+HA RK+E+ LE+D L+ ++ L+ Sbjct: 514 HIGSRFGGRDHSTVIHAYRKIEEDLESDTELQDDISSLQ 552 >gi|121634189|ref|YP_974434.1| putative chromosomal replication initiator protein [Neisseria meningitidis FAM18] gi|166214686|sp|A1KS02|DNAA_NEIMF RecName: Full=Chromosomal replication initiator protein DnaA gi|120865895|emb|CAM09631.1| putative chromosomal replication initiator protein [Neisseria meningitidis FAM18] gi|325131541|gb|EGC54248.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M6190] gi|325135494|gb|EGC58112.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M0579] gi|325139204|gb|EGC61750.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis ES14902] gi|325197601|gb|ADY93057.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis G2136] gi|325201462|gb|ADY96916.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240149] gi|325207443|gb|ADZ02895.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis NZ-05/33] Length = 518 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|304388449|ref|ZP_07370555.1| DNA-directed DNA replication initiator protein [Neisseria meningitidis ATCC 13091] gi|304337566|gb|EFM03729.1| DNA-directed DNA replication initiator protein [Neisseria meningitidis ATCC 13091] Length = 518 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQ+AM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQIAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|237814480|ref|YP_002898931.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei MSHR346] gi|237504967|gb|ACQ97285.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei MSHR346] Length = 459 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 122 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 176 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 177 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 236 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 237 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 296 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 297 ILMRK---AQSEG--VSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 351 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 352 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 410 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 411 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 457 >gi|325143614|gb|EGC65933.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240013] Length = 518 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|325127478|gb|EGC50407.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis N1568] Length = 518 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|194335183|ref|YP_002016977.1| chromosomal replication initiator protein DnaA [Pelodictyon phaeoclathratiforme BU-1] gi|194307660|gb|ACF42360.1| chromosomal replication initiator protein DnaA [Pelodictyon phaeoclathratiforme BU-1] Length = 487 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/474 (30%), Positives = 252/474 (53%), Gaps = 41/474 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ ++ P + +WF +K S + + + VP+ F WI+ Y + KL ++ + Sbjct: 31 IREKINPLAFKTWFFPIKPLSFSGSELTIEVPSQFFYEWIEENY-SSFLKLALKD---VI 86 Query: 106 GVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV----------- 153 G E L+ S+ + +K+ P +L P ++ I + T + Sbjct: 87 GPEAKLMYSIVM---DKSQGQPVTIEL-PHQNAMNGDFIAASRATEARAKNSEEFEKNLA 142 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F + L+S++ F T I G N +A A++S+A+ S G NPL I+ VGLGKTH+ Sbjct: 143 RFETHLNSKYTFDTLIRGDCNSLAFAASKSVAQ--SPGQNA--FNPLVIYGGVGLGKTHM 198 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N+ + + + RV+Y+++E F F +AI++ R+ID+L+IDD+QF Sbjct: 199 MQAIGNSVRENRLSERVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRSIDVLIIDDIQFFS 258 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q E H+ N+L S KQ++ +ADRP +++ ++ R+ SR G+S + DYE Sbjct: 259 GKEKTQEEIFHIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGLSADIQPPDYET 318 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP----- 386 R +I+ ++L S +N++E V+ +A VT + REL+G +L+ S Sbjct: 319 RKAIILSKLHQS-----GVNLDETVIEFIATNVTENVRELEGCIVKLLAAQSLDNREIDL 373 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 T +++ H TK++ ++ I++ V +++I+ NDL + + + RQVAM Sbjct: 374 QFTKSTLKDIIRHT-----TKRLTLDTIEKAVCSYFSITPNDLKGKSKKKEIAVGRQVAM 428 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLSK++T S IG FG RDH+TV+HAV K ++T +K++E +K+ I Sbjct: 429 YLSKLLTDSSLKTIGLHFGGRDHSTVIHAVNTTTKKVDTIGDERKKIEEIKKRI 482 >gi|172038580|ref|YP_001805081.1| chromosomal replication initiation protein [Cyanothece sp. ATCC 51142] gi|254777898|sp|B1X0X6|DNAA_CYAA5 RecName: Full=Chromosomal replication initiator protein DnaA gi|171700034|gb|ACB53015.1| chromosomal replication initiator protein [Cyanothece sp. ATCC 51142] Length = 455 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 149/472 (31%), Positives = 244/472 (51%), Gaps = 28/472 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + I+ V RLK ++ P Y +W + N + + V F I N Sbjct: 1 MTISPQYIWNQVLDRLKLRLNPTAYETWIASATVQTFQDNCLVIQVENPF----ILNHLQ 56 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +T L EE I G I V+ T+ ++ + N+S + + +Q Sbjct: 57 KTYYSLILEEVETIVGYPIAVKLT-------TSQEQNLRIVDKNKDNLSSTKLQNKRQQE 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 SP L+ R+ FS F+ G +NR+A A+ ++AE + NPLF+ VGLGKT Sbjct: 110 SPKLNQ-LNPRYNFSRFVVGPTNRMAHAASLAVAESPGREF-----NPLFLCGGVGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA ++ PN V Y++ E F ++IR + N ++ R D+LL+DD+QF Sbjct: 164 HLMQAIAYYRLELYPNANVFYVSTEQFTNDLITSIRQDSMENFREHYRTADILLVDDIQF 223 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP + SL R+ SR G+ + + D Sbjct: 224 IEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKRIPSLQDRLVSRFSMGLIADIQVPDL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + + +V+ ++A T++ REL+GA + V ++ I Sbjct: 284 ETRMAILQKK-----AEYENIRLPRDVIEYIATNYTSNIRELEGALIRAV---TYISISG 335 Query: 390 AEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++N E E I ++VA+++N+S DL + R R + RQ+ MYL Sbjct: 336 LSMTVENIAPVLNPPMEQITASPEIIIQIVAENFNVSVEDLKGSSRRREISLARQIGMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 + T S P IG FG +DHTTVL++ K+ K+ + D L +++ EL R+ Sbjct: 396 MRQHTDLSLPRIGEEFGGKDHTTVLYSCDKISKLQKKDWDLSQQLSELSDRI 447 >gi|89898446|ref|YP_515556.1| chromosomal replication initiation protein [Chlamydophila felis Fe/C-56] gi|89331818|dbj|BAE81411.1| chromosomal replication initiator protein [Chlamydophila felis Fe/C-56] Length = 450 Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 145/469 (30%), Positives = 236/469 (50%), Gaps = 28/469 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 NC + V+ +K + + +W ++ + L VP F++ ++ + Y + + Sbjct: 6 NCSTWEQFVN-YVKTRCSKTAFENWISPIQIIEETQEKIRLEVPNIFVQNYLLDNYKQDL 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + +E +V + V+ A P K SP T S Sbjct: 65 CSFVPLDAQGEPALEFVVAEIKKSPVQPVA--PREQKESPAETFEG-----------SKD 111 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F L++ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL Sbjct: 112 FELKLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSY-----NPLFIHGGVGLGKTHLL 166 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ + + NLRV +T E F+ +R +K+ R++DLLL+DD+QFLQ Sbjct: 167 HAVGHYVKEHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLDLLLVDDIQFLQN 226 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 + + EFC+ +L++ KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R Sbjct: 227 RQNFEEEFCNTFETLINLNKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETR 285 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAE 391 +IL+++ E L+I E+ ++A + + R+L+GA N+L + F LT Sbjct: 286 VAILQHK-----AEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTES 340 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 I + L L + +K+ +E I + VA + + DL N R + +V RQVAMYL+K Sbjct: 341 IVRDTLKELFRSPSKQKVSVESILKSVATVFQVKLQDLKGNSRSKELVLARQVAMYLAKT 400 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + S IG FG + H+TVL+A + +E+ +E D TL +++ L K I Sbjct: 401 LITDSLVAIGSAFG-KTHSTVLYACKTIEQKIEKDETLTRQISLCKNHI 448 >gi|329118144|ref|ZP_08246856.1| DNA-directed DNA replication initiator protein DnaA [Neisseria bacilliformis ATCC BAA-1200] gi|327465804|gb|EGF12077.1| DNA-directed DNA replication initiator protein DnaA [Neisseria bacilliformis ATCC BAA-1200] Length = 508 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/344 (36%), Positives = 197/344 (57%), Gaps = 15/344 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L S + F T +EG NR+A AA+SIAE Y NP F++ S GLGKTHL+QA Sbjct: 171 SNLSSDYTFETLVEGKGNRMAAAAARSIAENPGKSY-----NPFFLYGSTGLGKTHLVQA 225 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R N K + DLL+IDD+QF++GK Sbjct: 226 VGNELLKNRPDAKVRYMHSDEYIRSFMKAVRHNGYDVFKQQYKQYDLLIIDDIQFIKGKD 285 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L ++EMR + Sbjct: 286 RTMEEFFYLYNHFHNEKKQLILTCDVLPAQIEGMDDRLKSRFSWGLTLELEPPEFEMRVA 345 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEI 392 IL+ + S + + E+ +A+ + ++ REL+GAF ++ F PI ++ Sbjct: 346 ILQKKAEAS-----GVTLCEDAAFFIAKYIRSNVRELEGAFKRVEASSRFQQKPI-DIDL 399 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L +V + K + E I VAKHY + ++LL +R R + RPRQVAM L+K + Sbjct: 400 ATEALQDIVAS-TYKVITAELILDAVAKHYRVKISELLGKKRTRNIARPRQVAMSLTKDL 458 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 T S P IG FG RDHTTV+H ++ V K+ D L ++ E L Sbjct: 459 TNLSLPAIGDAFGGRDHTTVMHGIKAVAKLRGEDPELAQDYEKL 502 >gi|194097590|ref|YP_002000626.1| chromosomal replication initiation protein [Neisseria gonorrhoeae NCCP11945] gi|193932880|gb|ACF28704.1| putative chromosomal replication protein (DnaA) [Neisseria gonorrhoeae NCCP11945] gi|317165576|gb|ADV09117.1| chromosomal replication initiation protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 502 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 166 LSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVG 220 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 221 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 280 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 281 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 340 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 341 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 395 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 396 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 453 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 454 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 500 >gi|312888502|ref|ZP_07748073.1| chromosomal replication initiator protein DnaA [Mucilaginibacter paludis DSM 18603] gi|311299000|gb|EFQ76098.1| chromosomal replication initiator protein DnaA [Mucilaginibacter paludis DSM 18603] Length = 475 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 141/487 (28%), Positives = 252/487 (51%), Gaps = 36/487 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E C +++ +K+ + + +WF+ +K + +++ + VP+ F W++ Y+ Sbjct: 1 MEKTCTNVWNSCLQIIKDNIPAQSFKTWFEPIKALRIEGSVLTIQVPSLFFFEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-------PI 143 + K +++ +E + VE+++SS T P N N ++ PI Sbjct: 61 GLLRKTIKKQLGEDGRLEYNI------VVEQSSSSKPYTTNMPSNGNGAEGKNQSMPIPI 114 Query: 144 ILGKQTISPVFGSP----------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + K +P F P L+ + F +FIEG NR+A +A ++A G T+ Sbjct: 115 SINKDIKNP-FVIPGLKKLQVDPQLNQNYTFESFIEGDCNRLARSAGYAVAA--KPGGTS 171 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPL I+ VGLGKTHL QAI N + P+ V+Y++ E F +F A++ N + Sbjct: 172 --FNPLMIYGGVGLGKTHLAQAIGNEIKRTLPDKLVLYVSCEKFTQQFVDALKHNNINDF 229 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + + ID+L++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ Sbjct: 230 VNFYQAIDVLIMDDVHNFAGKEKTQDFFFHIFNHLHQSGKQLIITSDKAPKDLAGLEERL 289 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 SR + G+S L + D E R +ILK ++ +++ EV+ +VA + + REL+ Sbjct: 290 LSRFKWGLSADLQIPDLETRMAILKTKIY-----QDGIDLPYEVIEYVAHNIDNNVRELE 344 Query: 373 GAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA L+ + + + +A +L + + TK++ +E IQ +V +++ + + S Sbjct: 345 GAMVSLLAQSTLNRKEIDLNLAKSMLKNFIKN-STKEISMEYIQSLVCEYFEVPIEMVKS 403 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 R R +V+ RQ++MYL+K T S IG FG RDH+TV++A + VE +++TD K Sbjct: 404 QTRKREIVQARQISMYLAKAHTKSSLKSIGNFFGGRDHSTVIYACQTVEDLIDTDKKFKG 463 Query: 492 EVELLKR 498 V +++ Sbjct: 464 YVADIQK 470 >gi|269797070|ref|YP_003310970.1| chromosomal replication initiator protein DnaA [Veillonella parvula DSM 2008] gi|269093699|gb|ACZ23690.1| chromosomal replication initiator protein DnaA [Veillonella parvula DSM 2008] Length = 524 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 199/350 (56%), Gaps = 10/350 (2%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ A Sbjct: 178 SNLNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDY-----NPLFIYGPSGLGKTHLMHA 232 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I NA + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + Sbjct: 233 IGNAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESRE 292 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 + E + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R + Sbjct: 293 STKTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIA 352 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA---E 391 I ++ L K++ + I+ + + +VA + + R L GAF +L+ S L + E Sbjct: 353 IFRSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLE 412 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQ+AMYL + Sbjct: 413 YTKHALAGLVHTEEVNIVNIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRD 472 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M S+P+I F RDHTT+LHA K+ K +E + K+ V +K+ ++ Sbjct: 473 MINESYPQIAAAFS-RDHTTILHAYDKITKEIEKNEETKRMVAEIKQKLT 521 >gi|124384274|ref|YP_001028201.1| chromosomal replication initiation protein [Burkholderia mallei NCTC 10229] gi|126449063|ref|YP_001079584.1| chromosomal replication initiation protein [Burkholderia mallei NCTC 10247] gi|254359608|ref|ZP_04975879.1| chromosomal replication initiator protein DnaA [Burkholderia mallei 2002721280] gi|166201864|sp|A3MH48|DNAA_BURM7 RecName: Full=Chromosomal replication initiator protein DnaA gi|166201865|sp|A2S8D2|DNAA_BURM9 RecName: Full=Chromosomal replication initiator protein DnaA gi|124292294|gb|ABN01563.1| chromosomal replication initiator protein DnaA [Burkholderia mallei NCTC 10229] gi|126241933|gb|ABO05026.1| chromosomal replication initiator protein DnaA [Burkholderia mallei NCTC 10247] gi|148028822|gb|EDK86754.1| chromosomal replication initiator protein DnaA [Burkholderia mallei 2002721280] Length = 533 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 196 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 250 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 251 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 310 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 311 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 370 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 371 ILMRK---AQSEG--VSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 425 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 426 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 484 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 485 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 531 >gi|239998133|ref|ZP_04718057.1| chromosomal replication initiation protein [Neisseria gonorrhoeae 35/02] gi|240013314|ref|ZP_04720227.1| chromosomal replication initiation protein [Neisseria gonorrhoeae DGI18] gi|240015759|ref|ZP_04722299.1| chromosomal replication initiation protein [Neisseria gonorrhoeae FA6140] gi|240114850|ref|ZP_04728912.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID18] gi|240117052|ref|ZP_04731114.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID1] gi|240124878|ref|ZP_04737764.1| chromosomal replication initiation protein [Neisseria gonorrhoeae SK-92-679] gi|240127391|ref|ZP_04740052.1| chromosomal replication initiation protein [Neisseria gonorrhoeae SK-93-1035] Length = 478 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 142 LSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVG 196 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 197 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 256 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 257 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 316 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 317 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 371 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 372 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 429 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 430 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 476 >gi|303256370|ref|ZP_07342384.1| DNA replication initiator protein [Burkholderiales bacterium 1_1_47] gi|302859861|gb|EFL82938.1| DNA replication initiator protein [Burkholderiales bacterium 1_1_47] Length = 457 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 243/454 (53%), Gaps = 33/454 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKF-HSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ V + LKN + +V+ WF +++F +I+++SVP+ +IK +Y + I Sbjct: 4 VWKSVLAFLKNTIPEEVFVPWFGKVEFTEDSEPDIINISVPSVPHSKFIKAQYEKDI--- 60 Query: 97 FQEEHSRIQGVEILVR-SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 +E+ S I G EI ++ +V P+ S P P NT + I+ G Sbjct: 61 -EEKASEICGREIKLKITVKDPNKGAMISEPLP---GPANTLPEEEKAPKSIDEIATKCG 116 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L S F TF+ G++NRVA ++A +AE + R NPLFI+ VGLGKTHL+ A Sbjct: 117 --LHSGLTFDTFVIGNANRVARSSAMLVAE-----FPGERCNPLFIYGGVGLGKTHLMHA 169 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASA-----IRDNCALNLKDSLRNIDLLLIDDMQF 270 + ++ PN ++ ++A F+ S D + RN+D LLIDD+QF Sbjct: 170 VGRKILEDNPNTNLLCISANRFINEVVSLSAGGRYSDEKIQKFDNKYRNLDALLIDDVQF 229 Query: 271 L--QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L +G Q F ++ +LL KQ++ D +L D R+ SR G+SV + + Sbjct: 230 LCKRGGTQQRLF-NIFEALLPKNKQIILTCDTYARQLSDFDERLISRFGAGLSVSIEPAE 288 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPI 387 +E+R +IL L ++++ KL + EV +A + T+ REL+GA N ++ R F Sbjct: 289 FELRAAIL---LQKAKQQGVKLPL--EVAYLIATRLNTNIRELEGALNSVIMRAEVFKKP 343 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+A E L + TG ++ IE+IQ+ A+H++I D+ S RRV V RQ+AMY Sbjct: 344 ITEELAKEALQGITGTG---RISIENIQQSTAEHFSIKIADMHSKRRVANVAYARQIAMY 400 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 L+K +T +S EIG FG RDH TVL+AV+K+ K Sbjct: 401 LAKELTQKSLIEIGYAFGGRDHATVLYAVKKITK 434 >gi|329944740|ref|ZP_08292819.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 170 str. F0386] gi|328529876|gb|EGF56766.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 170 str. F0386] Length = 380 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/355 (37%), Positives = 197/355 (55%), Gaps = 24/355 (6%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ R+ F T++ GSSNR A A ++AE + Y NPLFI+ GLGKTHLL A Sbjct: 31 SQLNPRYTFDTYVTGSSNRFAHATALAVAEAPARAY-----NPLFIYGGSGLGKTHLLHA 85 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQF 270 + + + P +RV Y+ +E F+ F + +RD + K R +D+LL+DD+QF Sbjct: 86 VGHYAQTLNPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQF 145 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQGK EF H NSL S KQVV +D+PP L LD R+RSR + G+ + D Sbjct: 146 LQGKESTLEEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDL 205 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL + L++ +VL ++A +TT+ REL+GA L+ +FA + Sbjct: 206 ETRIAILSRKGTAE-----GLDLPFDVLEYIASRITTNIRELEGA---LIRVTAFASLNK 257 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A+ +L +++ E +++ I A ++ I+ +DL S R RT+V R +A Sbjct: 258 QPVDQTLAEMVLKDIISDPEGQEITTSLIMAQTADYFGITIDDLCSANRSRTMVSARHIA 317 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK-MLETDITLKKEVELLKRL 499 MYL + +T S P+IGR FG RDHTTV+ A +K+ M E T + EL R+ Sbjct: 318 MYLCRELTDLSLPKIGREFGGRDHTTVMSADKKIRTLMAERRSTFNQVTELTSRI 372 >gi|300780158|ref|ZP_07090014.1| DNA-directed DNA replication initiator protein [Corynebacterium genitalium ATCC 33030] gi|300534268|gb|EFK55327.1| DNA-directed DNA replication initiator protein [Corynebacterium genitalium ATCC 33030] Length = 533 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 202/346 (58%), Gaps = 14/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F+ GSSNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 192 LNPKYTFENFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAG 246 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N S QP+LR+ Y+++E F + +++RD+ + K R++D+L++DD+QFL+GK Sbjct: 247 NYSRVLQPDLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRDLDILMVDDIQFLEGKEGT 306 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 307 QEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDVQPPDLETRIAIL 366 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + A + +++EVL +A +S REL+GA ++ S PI T ++A Sbjct: 367 MKKAAADGTQ-----VDDEVLELIASKFESSIRELEGALIRVSAYSSLIKEPI-TLDVAQ 420 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L ++ K+ I+ + A+++ +S + L + RTV RQ+AMYL + +T Sbjct: 421 IALRDILPDEGDIKITATTIKEVAAEYFRVSLDKLTGAGKTRTVAHARQLAMYLCRELTD 480 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG+ FG +DHTTV++A RK+ K + + E++ L ++I Sbjct: 481 LSLPKIGQEFGGKDHTTVMYADRKIRKEMTENRETYDEIQELTQII 526 >gi|188995956|ref|YP_001930207.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium sp. YO3AOP1] gi|188931023|gb|ACD65653.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium sp. YO3AOP1] Length = 459 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/430 (31%), Positives = 226/430 (52%), Gaps = 34/430 (7%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 +++ P N K WI+ LE I +++ R+V + + S TK Sbjct: 54 IYIYTPDNIYKNWIETEILENI---------ETSANKVIGRNVKIHVISLKDKSSKKTKK 104 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 + N ++ Q +S L+ ++ F I G++N+VA A ++ E Y Sbjct: 105 GKNSKNFEETDFY---QYLS------LNPKYTFDNLIVGNNNKVAFQACLAVTENLGKIY 155 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLFI+ VGLGKTHLL A + + + +++Y TA+ F S + L Sbjct: 156 -----NPLFIYGDVGLGKTHLLHGTAYHVLAKSSSAKIIYTTADTFASELFSYLEKGMIL 210 Query: 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + R +DLLLIDD+QFL GK Q EF H+ N L KQ++ ++D+PPS+L ++ Sbjct: 211 EFRKKYREVDLLLIDDIQFLVGKERTQIEFYHIFNVLYSLGKQIILSSDQPPSKLNGIEK 270 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI--NEEVLMHVARTVTTSG 368 R+ SR G+ V + D L+ ++ I+ K+ +LN+ + +V++ +A+TV TS Sbjct: 271 RLISRFSSGLIVEITKPD-------LETKINITLKKMKELNVEFSRDVVLFIAKTVNTSV 323 Query: 369 RELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+G+ +L + +T ++A +L ++ E + + +E IQ+ V ++NI Sbjct: 324 RELEGSIKRLKAYSEIMGRPITLDVARTVLKDVLEVNEVQPLTVERIQKEVCNYFNIDIK 383 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 +LL N R + V RQ+AMYLSK +T S I R F +DHTT+L+A K+++++E D Sbjct: 384 ELLGNSRNKKSVTARQIAMYLSKELTDESLSSIARYFHKKDHTTILNAANKIKEIMEKDR 443 Query: 488 TLKKEVELLK 497 LK V+L+K Sbjct: 444 KLKYTVDLIK 453 >gi|331001504|ref|ZP_08325122.1| replication initiator protein DnaA [Parasutterella excrementihominis YIT 11859] gi|329568233|gb|EGG50050.1| replication initiator protein DnaA [Parasutterella excrementihominis YIT 11859] Length = 457 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 155/454 (34%), Positives = 243/454 (53%), Gaps = 33/454 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKF-HSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ V + LKN + +V+ WF +++F +I+++SVP+ +IK +Y + I Sbjct: 4 VWKSVLAFLKNTIPEEVFVPWFGKVEFTEDSEPDIINISVPSVPHSKFIKAQYEKDI--- 60 Query: 97 FQEEHSRIQGVEILVR-SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 +E+ S I G EI ++ +V P+ S P P NT + I+ G Sbjct: 61 -EEKASEICGREIKLKITVKDPNKGAMISEPFP---GPANTLPEEEKAPKSIDEIATKCG 116 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L S F TF+ G++NRVA ++A +AE + R NPLFI+ VGLGKTHL+ A Sbjct: 117 --LHSGLTFDTFVIGNANRVARSSAMLVAE-----FPGERCNPLFIYGGVGLGKTHLMHA 169 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASA-----IRDNCALNLKDSLRNIDLLLIDDMQF 270 + ++ PN ++ ++A F+ S D + RN+D LLIDD+QF Sbjct: 170 VGRKILEDNPNTNLLCISANRFINEVVSLSAGGRYSDEKIQKFDNKYRNLDALLIDDVQF 229 Query: 271 L--QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L +G Q F ++ +LL KQ++ D +L D R+ SR G+SV + + Sbjct: 230 LCKRGGTQQRLF-NIFEALLPKNKQIILTCDTYARQLSDFDERLISRFGAGLSVSIEPAE 288 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPI 387 +E+R +IL L ++++ KL + EV +A + T+ REL+GA N ++ R F Sbjct: 289 FELRAAIL---LQKAKQQGVKLPL--EVAYLIATRLNTNIRELEGALNSVIMRAEVFKKP 343 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+A E L + TG ++ IE+IQ+ A+H++I D+ S RRV V RQ+AMY Sbjct: 344 ITEELAKEALQGITGTG---RISIENIQQSTAEHFSIKIADMHSKRRVANVAYARQIAMY 400 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 L+K +T +S EIG FG RDH TVL+AV+K+ K Sbjct: 401 LAKELTQKSLIEIGYAFGGRDHATVLYAVKKITK 434 >gi|268596039|ref|ZP_06130206.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae FA19] gi|268549827|gb|EEZ44846.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae FA19] Length = 518 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|254671988|emb|CBA04453.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha275] Length = 518 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 128/347 (36%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R K+ E D L ++ E L+ LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAGAKLREEDPELAQDYEKLRFLI 516 >gi|254186619|ref|ZP_04893136.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pasteur 52237] gi|157934304|gb|EDO89974.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pasteur 52237] Length = 533 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 196 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 250 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 251 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 310 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 311 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 370 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 371 ILMRK---AQSEG--VSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 425 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 426 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 484 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 485 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 531 >gi|53717714|ref|YP_106700.1| chromosomal replication initiation protein [Burkholderia pseudomallei K96243] gi|76810636|ref|YP_331717.1| chromosomal replication initiation protein [Burkholderia pseudomallei 1710b] gi|126441420|ref|YP_001057144.1| chromosomal replication initiation protein [Burkholderia pseudomallei 668] gi|254259753|ref|ZP_04950807.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1710a] gi|61212530|sp|Q63YW5|DNAA_BURPS RecName: Full=Chromosomal replication initiator protein DnaA gi|123771937|sp|Q3JXI6|DNAA_BURP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|166201868|sp|A3N473|DNAA_BURP6 RecName: Full=Chromosomal replication initiator protein DnaA gi|52208128|emb|CAH34058.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei K96243] gi|76580089|gb|ABA49564.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1710b] gi|126220913|gb|ABN84419.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 668] gi|254218442|gb|EET07826.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1710a] Length = 533 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 196 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 250 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 251 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 310 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 311 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 370 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 371 ILMRK---AQSEG--VSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 425 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 426 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 484 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 485 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 531 >gi|225860013|ref|YP_002741522.1| chromosomal replication initiation protein [Streptococcus pneumoniae Taiwan19F-14] gi|254777920|sp|C1CU44|DNAA_STRZT RecName: Full=Chromosomal replication initiator protein DnaA gi|225727811|gb|ACO23662.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae Taiwan19F-14] gi|327388986|gb|EGE87334.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA04375] Length = 453 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHVKIKSLIDQDDNLRLEIESIKKKI 452 >gi|226193147|ref|ZP_03788757.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pakistan 9] gi|225934747|gb|EEH30724.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pakistan 9] Length = 506 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 169 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 223 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 224 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 283 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 284 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 343 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 344 ILMRK---AQSEG--VSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 398 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 399 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 457 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 458 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 504 >gi|121599001|ref|YP_994142.1| chromosomal replication initiation protein [Burkholderia mallei SAVP1] gi|126451895|ref|YP_001064388.1| chromosomal replication initiation protein [Burkholderia pseudomallei 1106a] gi|134281353|ref|ZP_01768061.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 305] gi|167001180|ref|ZP_02266979.1| chromosomal replication initiator protein DnaA [Burkholderia mallei PRL-20] gi|217423994|ref|ZP_03455494.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 576] gi|242317321|ref|ZP_04816337.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106b] gi|254184148|ref|ZP_04890739.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1655] gi|254194550|ref|ZP_04900981.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei S13] gi|254298586|ref|ZP_04966037.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 406e] gi|166201866|sp|A1V7D9|DNAA_BURMS RecName: Full=Chromosomal replication initiator protein DnaA gi|166201867|sp|A3NPW7|DNAA_BURP0 RecName: Full=Chromosomal replication initiator protein DnaA gi|121227811|gb|ABM50329.1| chromosomal replication initiator protein DnaA [Burkholderia mallei SAVP1] gi|126225537|gb|ABN89077.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106a] gi|134247020|gb|EBA47106.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 305] gi|157808658|gb|EDO85828.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 406e] gi|169651300|gb|EDS83993.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei S13] gi|184214680|gb|EDU11723.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1655] gi|217393057|gb|EEC33079.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 576] gi|242140560|gb|EES26962.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106b] gi|243063007|gb|EES45193.1| chromosomal replication initiator protein DnaA [Burkholderia mallei PRL-20] Length = 533 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/347 (36%), Positives = 201/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 196 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 250 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 251 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 310 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 311 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 370 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 371 ILMRK---AQSEG--VSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 425 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 426 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 484 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 485 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 531 >gi|328946931|ref|YP_004364268.1| Chromosomal replication initiator protein dnaA [Treponema succinifaciens DSM 2489] gi|328447255|gb|AEB12971.1| Chromosomal replication initiator protein dnaA [Treponema succinifaciens DSM 2489] Length = 485 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 241/462 (52%), Gaps = 30/462 (6%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWI---KNRYLETI-TKLFQEEHSRIQGVEILVRS 113 WF + I +SVP++F+ WI Y+ + +K+ + I IL + Sbjct: 33 WFNMEYVEDTIETIT-VSVPSDFM--WISMVNKGYVNAVESKIAELSGQNINLTYILKKR 89 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-------LDSRFVFST 166 + E S P + N+NIS I ++ +P+ P L + F Sbjct: 90 NSQKESESINSVPKTATIDSENSNISNENEIDSEKKSAPINSVPTFKIHPQLSEDYTFEK 149 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP- 225 F++G ++ A +A S+A G R NPL I+ VGLGKTHL+Q+I N P Sbjct: 150 FVKGENSEFAYSA--SLAAAKEPGR---RFNPLLIYGGVGLGKTHLMQSIGNYIYNNPPE 204 Query: 226 ---NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFC 281 N+++ Y++AE F+ F ++RD + K+ R +D+LL+DD+ FL+ K+ Q E Sbjct: 205 GKENIKICYISAENFLNEFTFSLRDGTSEKFKNKYRKLDVLLLDDIHFLEDKIQTQEELF 264 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + L + Q+V DRP SEL ++ R++SR G ++ L YE+R +IL +L Sbjct: 265 YTFEELYRTHAQIVFTCDRPISELNGIEDRLKSRFSMGTTIDLQPPSYEIRKAILLKKLE 324 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHL 400 I +K P E+V+ +A+ + ++ REL ++++ + LT +IA +LLS Sbjct: 325 IKKKSVP-----EDVIDFIAKNIQSNVRELGACLDKMIGYAELLQKNLTIDIAKKLLSDN 379 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 ++ + I+ IQ++VA HYNIS +D+ +R + + R +A+Y+++I+T SF EI Sbjct: 380 ISKVSDGSISIDTIQKVVANHYNISLSDIKGVKRNKKIAYSRHIAIYIARILTESSFNEI 439 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG +DH+T++H+ +E L+TD +L ++LL R I + Sbjct: 440 AAEFGGKDHSTIMHSYNTIELQLKTDESLNSTIDLLIREIKD 481 >gi|240112104|ref|ZP_04726594.1| chromosomal replication initiation protein [Neisseria gonorrhoeae MS11] gi|240122690|ref|ZP_04735646.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID332] Length = 479 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 143 LSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVG 197 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 198 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 257 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 258 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 317 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 318 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 372 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 373 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 430 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 431 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 477 >gi|59800474|ref|YP_207186.1| putative chromosomal replication protein (DnaA) [Neisseria gonorrhoeae FA 1090] gi|254492913|ref|ZP_05106084.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 1291] gi|260441335|ref|ZP_05795151.1| chromosomal replication initiation protein [Neisseria gonorrhoeae DGI2] gi|268593985|ref|ZP_06128152.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 35/02] gi|268598163|ref|ZP_06132330.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae MS11] gi|268600507|ref|ZP_06134674.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID18] gi|268602740|ref|ZP_06136907.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID1] gi|268681289|ref|ZP_06148151.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID332] gi|268683460|ref|ZP_06150322.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-92-679] gi|268685766|ref|ZP_06152628.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-93-1035] gi|291044693|ref|ZP_06570402.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae DGI2] gi|293397795|ref|ZP_06642001.1| chromosomal replication initiator protein DnaA [Neisseria gonorrhoeae F62] gi|71151801|sp|Q5FAJ2|DNAA_NEIG1 RecName: Full=Chromosomal replication initiator protein DnaA gi|59717369|gb|AAW88774.1| putative chromosomal replication protein (DnaA) [Neisseria gonorrhoeae FA 1090] gi|226511953|gb|EEH61298.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 1291] gi|268547374|gb|EEZ42792.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 35/02] gi|268582294|gb|EEZ46970.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae MS11] gi|268584638|gb|EEZ49314.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID18] gi|268586871|gb|EEZ51547.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID1] gi|268621573|gb|EEZ53973.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID332] gi|268623744|gb|EEZ56144.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-92-679] gi|268626050|gb|EEZ58450.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-93-1035] gi|291011587|gb|EFE03583.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae DGI2] gi|291611741|gb|EFF40810.1| chromosomal replication initiator protein DnaA [Neisseria gonorrhoeae F62] Length = 518 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 182 LSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 237 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 297 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 357 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 411 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 412 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 516 >gi|240120386|ref|ZP_04733348.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID24-1] Length = 468 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 132 LSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVG 186 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 187 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 246 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 247 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 306 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 307 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 361 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 362 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 419 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 420 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 466 >gi|113866032|ref|YP_724521.1| chromosomal replication initiation protein [Ralstonia eutropha H16] gi|123033387|sp|Q0KFR8|DNAA_CUPNH RecName: Full=Chromosomal replication initiator protein DnaA gi|113524808|emb|CAJ91153.1| chromosomal replication initiator protein DnaA [Ralstonia eutropha H16] Length = 588 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 191/345 (55%), Gaps = 13/345 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F+ G +N++A AA +A Y NPL+++ VGLGKTHL+ AI Sbjct: 253 LNPILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHAIG 307 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 308 NFMLLENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRT 367 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR +IL Sbjct: 368 QEEFFYAFEALIANRAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL 427 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADE 395 + A +N+ EEV VA+ + ++ REL+GA + L F + +T E+ E Sbjct: 428 MKKAAAE-----NVNVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGKDITIEVTRE 482 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T + Sbjct: 483 ALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQK 541 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 542 SLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 586 >gi|325294208|ref|YP_004280722.1| Chromosomal replication initiator protein dnaA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064656|gb|ADY72663.1| Chromosomal replication initiator protein dnaA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 469 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 141/445 (31%), Positives = 235/445 (52%), Gaps = 39/445 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ +V P +Y + F+ LK S+ ++ L +K +++ YL I ++ +E R Sbjct: 12 IRKEVKPQLYKTMFKDLKVVSIDSGVLKLKAKDRIVKEYLEKNYLNVIKEVVSKEFGRQL 71 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V I++ + I K P+ ++ + K+ + S L+ ++ F Sbjct: 72 DVAIVL-------------AEDIHK--PLQLELNLFEVKKRKENLE----SNLNPKYTFE 112 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ G++N+ A AA ++AE Y NPLFI+ VGLGKTHL+QAI N P Sbjct: 113 NFVVGANNQFAHAAAVAVAENPGKAY-----NPLFIYGGVGLGKTHLMQAIGNFIKNVSP 167 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 + VVY+T E FM A++++ ++ R +D+LLIDD+QF+ GK Q EF H Sbjct: 168 SKTVVYITTESFMNELIDALKNDKMTEFREKYRTVDVLLIDDIQFISGKDGTQIEFFHTF 227 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L D+ KQVV +DRPP ++ L R+RSR + G+ + D+E R +IL+ + Sbjct: 228 NALYDAGKQVVLTSDRPPKDIPMLTERLRSRFEWGLIADIQPPDFETRIAILRRKA---- 283 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS---- 398 E + + + +L +A + ++ R+L+GA +L + + PI E+ EL S Sbjct: 284 -EAEGIEVEDSILKLIANIIKSNIRQLEGALTKLKAKATLEGKPI-NEELVKELFSETTF 341 Query: 399 -HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 +L NT TKK+ IE I+++V + + I + R + + RQ+AMYL++ + S+ Sbjct: 342 TNLKNTS-TKKLPIEKIKKVVCEEFKIEMKQMEGTSRKKQIALARQIAMYLARKLGNFSY 400 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKM 482 +I F DHTTV+HAV K+E+M Sbjct: 401 SKIASAFNRDDHTTVIHAVHKIEEM 425 >gi|240079896|ref|ZP_04724439.1| chromosomal replication initiation protein [Neisseria gonorrhoeae FA19] Length = 478 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 129/347 (37%), Positives = 200/347 (57%), Gaps = 16/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ Sbjct: 142 LSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVG 196 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 197 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 256 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 257 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAIL 316 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 317 QKK-----AEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLAR 371 Query: 395 ELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ E K+ DI VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 372 TALQDII--AEKHKVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELT 429 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 430 TLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILI 476 >gi|149278100|ref|ZP_01884239.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] gi|149231298|gb|EDM36678.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] Length = 477 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/486 (27%), Positives = 260/486 (53%), Gaps = 32/486 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ C ++ +K+ + + +WF+ + + +++ + VP+ F W++ Y+ Sbjct: 1 MQNTCTQVWNNCLQIIKDNIPAQSFKTWFEPISALKLEGSVLTVQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQEE---HSRIQGVEILVRSV--ALPSVEKTASSPSITKLS-------PINTNI 138 + K +++ R++ ++ +S ALP S+ S++ + P+N N Sbjct: 61 ALLRKTVKQQLGAEGRLEYNIVVDKSTNGALPYTTNMPSNGSMSSNNRKQSMPVPVNVNR 120 Query: 139 S-KSPII---LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 K+P + L K + P L++ + F TF+EG NR+A +A +++ G T+ Sbjct: 121 DIKNPFVIPGLKKMNVDP----QLNANYTFDTFVEGDCNRLARSAGHAVSA--KPGATS- 173 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPL I+ + GLGKTHL QAI N + P+ V+YL+ E F +F ++++N + Sbjct: 174 -FNPLMIYGASGLGKTHLAQAIGNEIRQNLPDKLVIYLSCEKFCQQFVESLKNNTINDFV 232 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + + +D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ Sbjct: 233 NFYQAMDVIIMDDIHNFAGKEKTQDIFFHIFNHLHQSGKQIIITSDKSPKDLTGLEERLL 292 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR + G+S L + + E R +IL+ ++ + P +EV+ +VA + + REL+G Sbjct: 293 SRFKWGLSADLQIPELETRIAILRKKMYADGIDLP-----DEVVEYVAHNIDNNVRELEG 347 Query: 374 AFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A L+ + + + ++A +L + + TK++ ++ IQ++V ++ + + L + Sbjct: 348 AMVSLLAQSTMNKKEIDLQLAKSMLKNFIKN-TTKEVSMDYIQKLVCDYFEVPVHLLKAP 406 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 R R +V+ RQ++MYLSK MT S IG FG RDH+TV++A + VE +++TD T + Sbjct: 407 TRKREIVQARQISMYLSKGMTKSSLKTIGAFFGGRDHSTVIYACQTVEDLIQTDKTFRSY 466 Query: 493 VELLKR 498 V +++ Sbjct: 467 VNDIEK 472 >gi|153827642|ref|ZP_01980309.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MZO-2] gi|149737880|gb|EDM52785.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MZO-2] Length = 416 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 140/435 (32%), Positives = 238/435 (54%), Gaps = 40/435 (9%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE-EHSR 103 RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L E + Sbjct: 3 RLQEELPAAEFSMWVRPLQ-AELNDNTLTLFAPNRFVLDWVRDKYLNNINRLLMEFSGND 61 Query: 104 IQGV--EILVRSVALP---------SVEKTASSPS-ITKLSPINT---NISKSPIILGKQ 148 + + E+ R V P V +S+P+ + + PI+ + S + I + Sbjct: 62 VPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSAAADITHRS 121 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 ++P + F+ F+EG SN++ L AA+ +++ Y NPLF++ GLG Sbjct: 122 NVNP--------KHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLG 168 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 169 KTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 228 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 229 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPP 288 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 289 ELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 343 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 PI T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 344 PI-TIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLA 401 Query: 446 MYLSKIMTPRSFPEI 460 M L+K +T S PEI Sbjct: 402 MALAKELTNHSLPEI 416 >gi|187927113|ref|YP_001897600.1| chromosomal replication initiation protein [Ralstonia pickettii 12J] gi|309780182|ref|ZP_07674933.1| bacterial DnaA protein helix-turn-helix domain protein [Ralstonia sp. 5_7_47FAA] gi|226735836|sp|B2UCF1|DNAA_RALPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|187724003|gb|ACD25168.1| chromosomal replication initiator protein DnaA [Ralstonia pickettii 12J] gi|308920885|gb|EFP66531.1| bacterial DnaA protein helix-turn-helix domain protein [Ralstonia sp. 5_7_47FAA] Length = 529 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 196/347 (56%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 192 SRLNQILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 246 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 247 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 306 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 307 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 366 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E+ + + EEV VA+ + ++ REL+GA +++ +F +T E+ Sbjct: 367 ILMKK---AQAEN--VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVT 421 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 422 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 480 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 481 QKSLPEIGELFGGRDHTTVLHAVRKIADERTKDAQLNHELHVLEQTL 527 >gi|269977741|ref|ZP_06184701.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris 28-1] gi|269934045|gb|EEZ90619.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris 28-1] Length = 516 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 193/332 (58%), Gaps = 12/332 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F +F+ GSSN AA+S+ + Y NPLFI+ GLGKTHLL AI Sbjct: 173 LNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAY-----NPLFIYGGSGLGKTHLLHAIG 227 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +++ P +V Y+++E F F +AI L+ R +D LLIDD+QFLQGK Sbjct: 228 NYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVDFLLIDDIQFLQGKEQT 287 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N+L + KQVV +D PP EL+S + RI+SRL+ G+ + + E R +IL Sbjct: 288 LEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGLLTDIQPPNLETRIAIL 347 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH--SFAPILTAEIAD 394 + + S +E+ + ++ VL ++A ++++ REL+GA ++ S ++ + A Sbjct: 348 RRK---SAQENLQ-GYDDAVLEYIASNISSNIRELEGALLRVTAYAALSGGGSVSLDTAK 403 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+L + T+ + + I A+++ + ++++S R RTVV RQVAMYL + +T Sbjct: 404 EILRDFITGRNTRDITPQMIIEQTAQYFGLEVDEIMSTDRSRTVVNSRQVAMYLCRELTE 463 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 S P++G FG RDHTTV+HAV+K+EK + D Sbjct: 464 LSLPKVGEAFGGRDHTTVMHAVKKIEKTINED 495 >gi|268678645|ref|YP_003303076.1| chromosomal replication initiator protein DnaA [Sulfurospirillum deleyianum DSM 6946] gi|268616676|gb|ACZ11041.1| chromosomal replication initiator protein DnaA [Sulfurospirillum deleyianum DSM 6946] Length = 441 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 135/461 (29%), Positives = 246/461 (53%), Gaps = 40/461 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ Y + ++LKF+ N + P + W+K +Y E + LF+ + + Sbjct: 10 LKEEISSLEYDRYIKQLKFNEKASNSDQMIFVAPNILIANWVKTKYAEKLAHLFELKTGK 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 ++I+++ L T S + I+ ++I + L+ + Sbjct: 70 KPEIKIVLKE----------------HLKSTKTKSSSTEIL---ESIKSTKNTILNPSYT 110 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F+ GSSN+ A TAA+S+AE V NP+FI+ GLGKTHL+ AI N + + Sbjct: 111 FNSFVVGSSNQYAYTAAKSVAEKPG-----VMYNPVFIYGPTGLGKTHLIHAIGNYA--Q 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCH 282 V+Y T E FM F +R+ ++ R+ D+LLIDD QFL K+ Q EF H Sbjct: 164 SKGKIVIYATIEQFMNDFTYNLRNQSMERFREKYRSCDVLLIDDTQFLSNKIQTQEEFFH 223 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N L + KQ+V +D+PP + L+ R++SR + G+ +GL + E + +I+K + + Sbjct: 224 TFNELHSAGKQIVLTSDKPPKMINGLEDRLKSRFEWGLIADVGLPELETKIAIIKKKCEL 283 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV- 401 +N+N +++ ++A + + RE++ A L +++A ++ +I E +++ Sbjct: 284 DG-----INLNSDIVNYIASNMGDNIREIESAIINL---NAYALLMRQDITLEFAKNVMR 335 Query: 402 -NTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 E K+ + +EDI +++AK NI +++ S +R + +V R++ +YL++ +TP S P Sbjct: 336 EQIKERKENISLEDIIQIIAKDLNIKPSEIKSTKRSKNIVEARRIGIYLARTLTPNSMPS 395 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + FG +DHT V H ++K+ +++ET+ + K +VE LK I Sbjct: 396 LASYFGMKDHTAVSHNIKKINELIETNESFKLKVEDLKNKI 436 >gi|124007462|ref|ZP_01692168.1| chromosomal replication initiator protein DnaA [Microscilla marina ATCC 23134] gi|123987118|gb|EAY26867.1| chromosomal replication initiator protein DnaA [Microscilla marina ATCC 23134] Length = 493 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 141/499 (28%), Positives = 259/499 (51%), Gaps = 32/499 (6%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 D ++ +C +++ ++ Q+ Y +WF +K ++ ++ + VP+ F W++ Sbjct: 4 DSISVQKDCYTVWENCLKVIRTQIAEQTYTTWFDPIKPLKLVDKVLTIQVPSRFFYEWLE 63 Query: 87 NRYLETITKLFQEE---HSRIQGVEILVRSVA--LPS-------------VEKTASSPSI 128 Y+ + K R++ I+ + LP+ + S+P+ Sbjct: 64 EHYVHLLRKAIDASLGTEGRLEYTIIMEKQEKPYLPNHNSPQFVQNNDNHTKPQNSAPAQ 123 Query: 129 TKLSPINTNISKSPIILGKQTISPVFGS-PLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 K N + + + S + ++ R+ F +FIEG NR+A +A ++A+ Sbjct: 124 QKNYSNNNYNNVNNSPNTPKKTSQFNQTFQINPRYTFESFIEGDCNRLARSAGLAVAQ-- 181 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 G T+ NPL ++ VGLGKTHL+QAI N ++ +++Y++++ F +F A+++ Sbjct: 182 KPGVTS--FNPLMLYGGVGLGKTHLVQAIGNY-VQENGQKKILYVSSDRFTNQFIEALKN 238 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELE 306 N + D D+L IDD+QFL GK E F ++ N L S KQ++ +D PP EL+ Sbjct: 239 NDLQSFTDYYMQADVLAIDDVQFLSGKEKTQEIFFNIFNHLHQSGKQIIMTSDCPPKELK 298 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK-LNINEEVLMHVARTVT 365 L R+ SR + G++ L D E R +I+ I Q ED K + I+ +V+ ++A ++ Sbjct: 299 GLQERLLSRFKWGLTADLKQPDLETRIAIIHK---ILQSEDNKNIEISGKVVEYLAHSID 355 Query: 366 TSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 ++ REL+GA ++ + S +PI T E+A + + +V ++ ++ I+++Q+ V ++ Sbjct: 356 SNVRELEGAIVSIIAKASLNQSPI-TMELAKQTVQQIVQPVDSSEINIDEVQKYVGDYFG 414 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +S L S R + +V RQ+AMY +K T S IG FG RDH+TV+HA++ V M+ Sbjct: 415 VSVEMLKSKTRKKEIVIARQIAMYFAKEYTGFSLKSIGYHFGGRDHSTVIHAIQTVNDMM 474 Query: 484 ETDITLKKEVELLKRLISE 502 LK ++ L++ S+ Sbjct: 475 SEKKELKMYIDDLRKKFSK 493 >gi|171056693|ref|YP_001789042.1| chromosomal replication initiation protein [Leptothrix cholodnii SP-6] gi|226735826|sp|B1Y547|DNAA_LEPCP RecName: Full=Chromosomal replication initiator protein DnaA gi|170774138|gb|ACB32277.1| chromosomal replication initiator protein DnaA [Leptothrix cholodnii SP-6] Length = 510 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 131/355 (36%), Positives = 201/355 (56%), Gaps = 14/355 (3%) Query: 149 TISP-VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 T+SP V L+ F T + G +N++A TAA + H Y NPLFI+ VGL Sbjct: 165 TLSPAVSRGRLNPALTFDTLVPGRANQMARTAALHVVGAPGHMY-----NPLFIYGGVGL 219 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A+ NA I+ P+ RV+YL AE F+ + LK ++DLLLIDD Sbjct: 220 GKTHLIHAVGNALIRDNPDARVLYLHAEQFISDVVRNYQRKTFDELKAKYHSLDLLLIDD 279 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF + +LL ++ +D P L +D R+ SR G++V + Sbjct: 280 VQFFAGKDRTQEEFFNAFEALLAKRAHIIMTSDTYPKGLVDIDERLTSRFDAGLTVAIEP 339 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA- 385 + EMR +IL + S E ++ E+V VA+ V + REL+GA +++ F+ Sbjct: 340 PELEMRVAILMKK---SDAEGSRMP--EDVAFFVAKNVRANVRELEGALRKVLAYSRFSH 394 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++ +A E L L++ + +++ +E+IQ+ VA Y I D+ S +R ++ RPRQ+A Sbjct: 395 KEISINLAREALKDLLSI-QNRQVSVENIQKTVADFYKIKIADMYSKKRPASIARPRQIA 453 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL+K MT +S PEIG FG RDHTTVLHAVRK+ + + L +++ +L++ + Sbjct: 454 MYLAKEMTQKSLPEIGELFGGRDHTTVLHAVRKIGGERQKNTELNQQLHVLEQTL 508 >gi|327490338|gb|EGF22125.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1058] Length = 450 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 144/435 (33%), Positives = 233/435 (53%), Gaps = 32/435 (7%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ L P L W +N +T F+ + +I G I + + + +SP I+ Sbjct: 42 IIFLDSPVKQL-FWEQNLVGVILTAGFEIFNDQIAGKYIFEEETNIDTPKSAVTSPQIST 100 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + +S PI G L S++ F F++G N A AA +++E + Sbjct: 101 VQ-----LSLPPIDTG-----------LKSKYTFDNFVQGDGNIWAKAAALAVSENLATT 144 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R Sbjct: 145 Y-----NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEM 199 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L Sbjct: 200 DSFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNL 259 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ +R + G++ + D+E R +IL+N++ E+ + L ++A ++ Sbjct: 260 EERLVTRFKWGLTQNITPPDFETRIAILRNKI-----ENLDYIFPNDTLEYLAGQFDSNV 314 Query: 369 RELDGAFNQ--LVFRHSFAPILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+GA N L+ R +T +IA E + + ++ + + I+ IQ V K Y +S Sbjct: 315 RDLEGALNDISLIARVRHLKEITIDIAAEAIRARKQDSNQVTVIPIDKIQSEVGKFYGVS 374 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ M+E+ Sbjct: 375 VKEMKGSRRVQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIES 434 Query: 486 DITLKKEVELLKRLI 500 + L+ E+E +K I Sbjct: 435 NDNLRLEIESIKNKI 449 >gi|241661626|ref|YP_002979986.1| chromosomal replication initiation protein [Ralstonia pickettii 12D] gi|240863653|gb|ACS61314.1| chromosomal replication initiator protein DnaA [Ralstonia pickettii 12D] Length = 529 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 196/347 (56%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 192 SRLNQILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 246 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 247 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 306 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 307 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 366 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E+ + + EEV VA+ + ++ REL+GA +++ +F +T E+ Sbjct: 367 ILMKK---AQAEN--VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVT 421 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 422 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 480 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 481 QKSLPEIGELFGGRDHTTVLHAVRKIADERTKDAQLNHELHVLEQTL 527 >gi|307699978|ref|ZP_07637029.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris FB024-16] gi|307615016|gb|EFN94234.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris FB024-16] Length = 516 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 193/332 (58%), Gaps = 12/332 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F +F+ GSSN AA+S+ + Y NPLFI+ GLGKTHLL AI Sbjct: 173 LNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAY-----NPLFIYGGSGLGKTHLLHAIG 227 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +++ P +V Y+++E F F +AI L+ R +D LLIDD+QFLQGK Sbjct: 228 NYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVDFLLIDDIQFLQGKEQT 287 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N+L + KQVV +D PP EL+S + RI+SRL+ G+ + + E R +IL Sbjct: 288 LEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGLLTDIQPPNLETRIAIL 347 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH--SFAPILTAEIAD 394 + + S +E+ + ++ VL ++A ++++ REL+GA ++ S ++ + A Sbjct: 348 RRK---SAQENLQ-GYDDAVLEYIASNISSNIRELEGALLRVTAYAALSGGGSVSLDTAK 403 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+L + T+ + + I A+++ + ++++S R RTVV RQVAMYL + +T Sbjct: 404 EILRDFITGRNTRDITPQMIIEQTAQYFGLEVDEIMSTDRSRTVVNSRQVAMYLCRELTE 463 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 S P++G FG RDHTTV+HAV+K+EK + D Sbjct: 464 LSLPKVGEAFGGRDHTTVMHAVKKIEKTINED 495 >gi|283457090|ref|YP_003361653.1| DNA replication initiation ATPase [Rothia mucilaginosa DY-18] gi|283133068|dbj|BAI63833.1| ATPase involved in DNA replication initiation [Rothia mucilaginosa DY-18] Length = 564 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 138/352 (39%), Positives = 195/352 (55%), Gaps = 24/352 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F TF+ G SNR A +A ++AE Y NPLFI+ GLGKTHLL AI Sbjct: 220 LNPNYTFDTFVIGQSNRFAHASAFAVAEQPGIVY-----NPLFIYGGSGLGKTHLLHAIG 274 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + PNLRV Y+ +E F F ++IRD+ + K RN+D+LLIDD+QFL GK Sbjct: 275 HYTKYLYPNLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDVLLIDDIQFLAGKEAT 334 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N+L + KQ+V +D PP +L R+RSR G++V + + E R +IL Sbjct: 335 MEEFFHTFNALYNHQKQIVITSDLPPKQLTGFAERMRSRFGSGLNVDVQPPELETRIAIL 394 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--------PIL 388 + + +Q E L + ++V+ ++A VT + REL+GA + R S A PI Sbjct: 395 RKK---AQNE--ILPVRDDVMEYIASHVTANIRELEGA----LIRASAAASMKKPPEPIT 445 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 AE L L +TG ++ + VAK++++S D+ S R RT+ RQVAMYL Sbjct: 446 LAEAETYLKDLLSDTG-GAEITSALVLATVAKYFDVSIEDMQSKSRTRTLTNARQVAMYL 504 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P IG G RDHTTV+HAVRKV + T+ +V L LI Sbjct: 505 LRELTEMSLPRIGNDLGGRDHTTVMHAVRKVSAQMAERQTIFNQVTELTNLI 556 >gi|113953832|ref|YP_731136.1| chromosomal replication initiation protein [Synechococcus sp. CC9311] gi|123327711|sp|Q0I8T6|DNAA_SYNS3 RecName: Full=Chromosomal replication initiator protein DnaA gi|113881183|gb|ABI46141.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9311] Length = 468 Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 257/477 (53%), Gaps = 24/477 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ ++ V L++ + + +W + + S ++ L P +F W++ Y Sbjct: 1 MELTGSELWDKVQHALQSNLSKPTFETWIRPARCSSFQDRMLTLQAPNSFASNWLRKNYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI ++ QE I G I V +A + + S ++++S N ++ + Sbjct: 61 STIAEVAQE----IIGHPIEVIVLAQDDEDAESGSTPLSRVSTSNQPLASTAAEAAAAVS 116 Query: 151 SPVFGSP-----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 +P +P L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI V Sbjct: 117 APPSTAPRRLPGLNMRYVFNRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGGV 171 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAI + ++ P RV Y++ E F +AIR + +D R DL+L+ Sbjct: 172 GLGKTHLMQAIGHYRLEIDPEARVFYVSTETFTNDLITAIRKDGMQAFRDRYRAADLILV 231 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF++GK Q EF H N+L D+ +Q+V A+DRPPS++ L R+ SR G+ + Sbjct: 232 DDIQFIEGKEYTQEEFFHTFNALHDAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADI 291 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + E ++ + +++ +++ T++ REL+GA + V +F Sbjct: 292 QAPDLETRMAILQKK-----AEQERVALPRDLIQYISGRFTSNIRELEGALTRAV---AF 343 Query: 385 APILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + I + E ++ +++ +G+ + + + V++ ++++ +D+ S+ R R V + RQ Sbjct: 344 SSITGIPMTVESVAPMLDPSGQGVDVTPQQVIEKVSEVFDVTADDMRSSSRRRAVSQARQ 403 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 V M+L + T S P IG FG +DHTTV++A+ +VEK L TD L +V+ +K L+ Sbjct: 404 VGMFLMRQGTDLSLPRIGDTFGGKDHTTVIYAIEQVEKKLATDPQLASQVQRVKDLL 460 >gi|255326481|ref|ZP_05367563.1| chromosomal replication initiator protein DnaA [Rothia mucilaginosa ATCC 25296] gi|255296521|gb|EET75856.1| chromosomal replication initiator protein DnaA [Rothia mucilaginosa ATCC 25296] Length = 565 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 138/352 (39%), Positives = 195/352 (55%), Gaps = 24/352 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F TF+ G SNR A +A ++AE Y NPLFI+ GLGKTHLL AI Sbjct: 221 LNPNYTFDTFVIGQSNRFAHASAFAVAEQPGIVY-----NPLFIYGGSGLGKTHLLHAIG 275 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + PNLRV Y+ +E F F ++IRD+ + K RN+D+LLIDD+QFL GK Sbjct: 276 HYTKYLYPNLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDVLLIDDIQFLAGKEAT 335 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N+L + KQ+V +D PP +L R+RSR G++V + + E R +IL Sbjct: 336 MEEFFHTFNALYNHQKQIVITSDLPPKQLTGFAERMRSRFGSGLNVDVQPPELETRIAIL 395 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--------PIL 388 + + +Q E L + ++V+ ++A VT + REL+GA + R S A PI Sbjct: 396 RKK---AQNE--ILPVRDDVMEYIASHVTANIRELEGA----LIRASAAASMKKPPEPIT 446 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 AE L L +TG ++ + VAK++++S D+ S R RT+ RQVAMYL Sbjct: 447 LAEAETYLKDLLSDTG-GAEITSALVLATVAKYFDVSIEDMQSKSRTRTLTNARQVAMYL 505 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P IG G RDHTTV+HAVRKV + T+ +V L LI Sbjct: 506 LRELTEMSLPRIGNDLGGRDHTTVMHAVRKVSAQMAERQTIFNQVTELTNLI 557 >gi|227876540|ref|ZP_03994651.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35243] gi|306817501|ref|ZP_07451245.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35239] gi|227842854|gb|EEJ53052.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35243] gi|304649725|gb|EFM47006.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35239] Length = 533 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 123/332 (37%), Positives = 193/332 (58%), Gaps = 12/332 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F +F+ GSSN AA+S+ + Y NPLFI+ GLGKTHLL AI Sbjct: 190 LNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAY-----NPLFIYGGSGLGKTHLLHAIG 244 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +++ P +V Y+++E F F +AI L+ R +D LLIDD+QFLQGK Sbjct: 245 NYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVDFLLIDDIQFLQGKEQT 304 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N+L + KQVV +D PP EL+S + RI+SRL+ G+ + + E R +IL Sbjct: 305 LEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGLLTDIQPPNLETRIAIL 364 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH--SFAPILTAEIAD 394 + + S +E+ + ++ VL ++A ++++ REL+GA ++ S ++ + A Sbjct: 365 RRK---SAQENLQ-GYDDAVLEYIASNISSNIRELEGALLRVTAYAALSGGGSVSLDTAK 420 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+L + T+ + + I A+++ + ++++S R RTVV RQVAMYL + +T Sbjct: 421 EILRDFITGRNTRDITPQMIIEQTAQYFGLEVDEIMSTDRSRTVVNSRQVAMYLCRELTE 480 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 S P++G FG RDHTTV+HAV+K+EK + D Sbjct: 481 LSLPKVGEAFGGRDHTTVMHAVKKIEKTINED 512 >gi|332883707|gb|EGK03987.1| chromosomal replication initiator protein DnaA [Dysgonomonas mossii DSM 22836] Length = 467 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 145/480 (30%), Positives = 251/480 (52%), Gaps = 24/480 (5%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 V + L NC +F ++ V + +WF + S + + + VP+ F ++ Sbjct: 4 VSAQKLWSNCLKVF-------QDNVTEAAFKTWFLPIVPLSYENRVFTIQVPSQFFYEYL 56 Query: 86 KNRYLETI-TKLFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 ++++++ + L++E S I IL+ + V+ + S T + N +K P Sbjct: 57 EDKFIDLLKATLYREIGSDTILQYRILMENTTNTLVDYRGDAKSSTDKIVLGKNTNKVPN 116 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 K ++ F S L++++ F F EG SN++A TA ++I + G T NPLF+H Sbjct: 117 PFQK-VVADDFDSQLNNKYTFDNFFEGESNKLARTAGETITR--NPGKTA--FNPLFVHG 171 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + G+GKTHL AI N+ ++ P RV+Y++A F ++A A R N + + + ID+L Sbjct: 172 TSGVGKTHLCHAIGNSIKEQYPEKRVLYVSAHLFKVQYADAGRYNTTNDFINFYQGIDVL 231 Query: 264 LIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+ L G + Q+ H+ N L + KQ++ D+ PSEL ++ R+ +R + G++ Sbjct: 232 IIDDIHELAGIEKTQNTLFHIFNHLHQNNKQLILTCDKSPSELHGVEERLLTRFRWGLTT 291 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D ++R IL+N++ L+I E+V+ ++A VT + R+L+G + H Sbjct: 292 KVDNPDKQLRLKILQNKIL-----HDGLSIPEDVVDYIAENVTDNARDLEGIIVS-IMAH 345 Query: 383 S--FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + + +A ++ + E KK+ I I+ V YNI + + R R +V+ Sbjct: 346 SLVYNKEIDLPLARRVIGQAIKKIEAKKITINTIESAVCDFYNIKSELIHTASRKRQIVQ 405 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 RQVAMYLSK T S +IG G ++H TVLHA R V + +E D ++EV E+ K+L Sbjct: 406 ARQVAMYLSKSYTEMSLAQIGSLIGKKNHATVLHACRTVREQMEVDKAFREEVAEIEKKL 465 >gi|301793326|emb|CBW35685.1| chromosomal replication initiator protein [Streptococcus pneumoniae INV104] Length = 453 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQV+M Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVSM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKI 452 >gi|332296670|ref|YP_004438592.1| Chromosomal replication initiator protein dnaA [Treponema brennaborense DSM 12168] gi|332179773|gb|AEE15461.1| Chromosomal replication initiator protein dnaA [Treponema brennaborense DSM 12168] Length = 513 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 204/369 (55%), Gaps = 23/369 (6%) Query: 146 GKQTISPVFGSPL----------DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 G+++ S G PL + + F F+ G N AA ++++ Y Sbjct: 151 GERSASRPLGEPLHEQTRRHPQLNPNYTFDNFVTGDDNSFVYNAALAVSKNPGRTY---- 206 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL I+ VGLGKTHL++AI N + + +VY+TAE F F +I K Sbjct: 207 -NPLLIYGGVGLGKTHLMEAIGN-EVYKSSGGNIVYITAENFTNEFIQSINTKTQSKFKS 264 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 RN D+LLIDD+ F Q K Q E H N+L ++ KQ+V DRP SEL+++ R+RS Sbjct: 265 KYRNADILLIDDIHFFQDKDGTQEELFHTFNALYENFKQLVFTCDRPVSELKNMTDRLRS 324 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R + G+SV + + YE+R +IL+ +L K+ P EV+ +A+ V T+ R+L+ + Sbjct: 325 RFERGLSVDIHMPKYEIRRAILERKLQSMGKKVPG-----EVIDLIAQNVQTNVRDLEAS 379 Query: 375 FNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 ++V + LT ++A + L + + + +E+IQR+VA ++ IS +D+ + Sbjct: 380 LTKMVAYIELTGKDLTIDVARKELRDTFFSPKASNITVENIQRVVADYFGISYSDIKGKK 439 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R + V+ PR +A+Y+++ +T S E+G FG RDHTTV+HA +K+E L +D TL+ V Sbjct: 440 RTKNVMLPRHLALYIARELTEYSTTELGMEFGGRDHTTVMHACQKIEDQLRSDSTLESTV 499 Query: 494 ELLKRLISE 502 + L R I + Sbjct: 500 QTLVRSIKD 508 >gi|120434989|ref|YP_860675.1| chromosomal replication initiation protein [Gramella forsetii KT0803] gi|117577139|emb|CAL65608.1| chromosomal replication initiator protein DnaA [Gramella forsetii KT0803] Length = 475 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 145/485 (29%), Positives = 256/485 (52%), Gaps = 33/485 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE--- 91 +S++ S +++ + P Y +WF+ ++ + + + VP+ F W++ Y++ Sbjct: 5 AQSVWNNCLSFIQDNITPQAYKTWFEPIQAVKLTDCALSIQVPSKFFYEWLEEHYVKLLK 64 Query: 92 -TITKLFQEEHSRIQGVEIL-VRSVALPSVEKTASSPSITKLS-----PINTNISKSP-- 142 ++T+ E+ + +++ LP EK S+ S PI +KSP Sbjct: 65 VSLTRELGEKAKLVYVIKMENTYGNKLPFTEKIPSTQRAQMTSQEVDVPIK---NKSPEL 121 Query: 143 ----IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 II G + + S L+ + F F+EG SNR+A +A ++A + G T+ NP Sbjct: 122 KNPFIIPGIRNVK--IESQLNPNYNFDNFLEGESNRLARSAGLAVA--NKPGGTS--FNP 175 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 176 LLIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQ 235 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 236 IIDVLVVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFK 295 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+S L D+E R SI+K++L E P E+++ +A + T+ REL+GA Sbjct: 296 WGLSAELQHPDFETRVSIIKSKLYRDGVEMP-----EDIVEFLANNIKTNIRELEGAIIS 350 Query: 378 LVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+ SF +T ++A +++ + V + +++ I+ IQ++V+ ++ + + L S R R Sbjct: 351 LIAHSSFNKKDITLDLAKKIVDNYVKNTK-REVSIDYIQKVVSDYFQMDVDTLQSKTRKR 409 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD KK VE L Sbjct: 410 HIVQARQLAMFFAKKFTKASLASIGSQIGSRDHATVLHACKTVDNLASTDKQFKKFVEDL 469 Query: 497 KRLIS 501 + ++ Sbjct: 470 SKKLT 474 >gi|189345559|ref|YP_001942088.1| chromosomal replication initiation protein [Chlorobium limicola DSM 245] gi|189339706|gb|ACD89109.1| chromosomal replication initiator protein DnaA [Chlorobium limicola DSM 245] Length = 491 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 142/473 (30%), Positives = 248/473 (52%), Gaps = 39/473 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K+++ P + +WF +K + + + + VP+ F WI+ Y + + ++ + Sbjct: 35 IKDKINPLAFKTWFLPIKPVNFSGSELTIEVPSQFFYEWIEENYSSYLKQALKD----VI 90 Query: 106 GVEI-LVRSVALPSVEKTASSPSITKLSPINT-------NISKSPIILGKQTISPV---- 153 G E L+ S+ + +K+ P +L NT S++ I ++ Sbjct: 91 GPEAKLMYSIVM---DKSQGQPVTIELPHQNTPGNDCRAEKSETQAIASERRDYERNLMR 147 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F + L++++ F T I G N +A A++SIA+ NPL I+ VGLGKTH++ Sbjct: 148 FETHLNTKYTFETLIRGDCNSLAFAASKSIAQNPGQN----AFNPLVIYGGVGLGKTHMI 203 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N+ + +V+Y+++E F F +AI++ R ID+L+IDD+QF G Sbjct: 204 QAIGNSVRTNCLSEKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRTIDVLIIDDIQFFAG 263 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q E H+ N+L S KQ++ +ADRP E++ ++ R+ SR G+S + DYE R Sbjct: 264 KEKTQEEIFHIFNTLHQSNKQIILSADRPIKEIKGIEDRLISRFNWGLSADIQPPDYETR 323 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----- 387 +I+ ++L S +N++E V+ +A VT + REL+G +L+ S Sbjct: 324 KAIILSKLHQS-----GVNLDEAVIEFIATNVTENVRELEGCIVKLLAAQSLDNQEIDLQ 378 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +++ H TK++ ++ I++ V Y+I+ NDL + + + RQ+AMY Sbjct: 379 FTKSTLKDIIRHT-----TKQLTLDTIEKAVCSFYSITPNDLKGKSKKKEIAAGRQMAMY 433 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L+K++T S IG FG RDH+TV+HA+ +EK +E +K++E +K+ I Sbjct: 434 LAKLLTESSLKTIGLHFGGRDHSTVIHALNTIEKRVEAISEERKKIEEIKKRI 486 >gi|319940207|ref|ZP_08014560.1| chromosomal replication initiator protein dnaA [Streptococcus anginosus 1_2_62CV] gi|319810678|gb|EFW07008.1| chromosomal replication initiator protein dnaA [Streptococcus anginosus 1_2_62CV] Length = 447 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 210/371 (56%), Gaps = 21/371 (5%) Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 NTN S +GK ++ PV + L +++ F F++G N AL+AA +++E + Y Sbjct: 92 NTNHS-----VGKPSLPPV-ETGLKAKYTFDNFVQGDGNVWALSAALAVSENLATTY--- 142 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLFI+ GLGKTHLL AI N ++ P+ RV Y+ AE F+ F +R + K Sbjct: 143 --NPLFIYGGPGLGKTHLLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMESFK 200 Query: 255 DSLRNIDLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + R++DLLLIDD+Q L GK + Q EF + N+L KQ+V +DR P L++L+ R+ Sbjct: 201 RTYRSLDLLLIDDIQSLGGKKVSTQEEFFNTFNALHGDNKQIVLTSDRSPDHLDNLEERL 260 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 +R + G++ + D+E R +IL+N++ E + L ++A ++ R+L+ Sbjct: 261 VTRFKWGLTQNITPPDFETRIAILRNKI-----EGLDYIFPNDTLEYLAGQFDSNVRDLE 315 Query: 373 GAFNQLVFR---HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 GA N + + I A+ + + + + + I+ IQ V Y +S ++ Sbjct: 316 GALNDISLMARVKNLKEITIDAAAEAIRARKQDASQILVIPIDKIQTEVGNFYGVSVKEM 375 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 +RRV+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ MLETD L Sbjct: 376 KGSRRVQNIVLARQVAMYLARELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMLETDDNL 435 Query: 490 KKEVELLKRLI 500 + E+E +K I Sbjct: 436 RLEIENIKNKI 446 >gi|220905644|ref|YP_002480955.1| chromosomal replication initiation protein [Cyanothece sp. PCC 7425] gi|254777899|sp|B8HRT5|DNAA_CYAP4 RecName: Full=Chromosomal replication initiator protein DnaA gi|219862255|gb|ACL42594.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7425] Length = 460 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 239/462 (51%), Gaps = 31/462 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ ES++ + RL+ Q+ + +W + + + + + P F + WI+ YL Sbjct: 1 MDISLESLWNQILERLQLQLSRPTFETWIKTATAEAFTEDRLTIRTPNPFARNWIQKYYL 60 Query: 91 ETITKLFQEEHSRIQGVEILV-RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +TI + + V++++ PS E+T P+ N S +P ++ Sbjct: 61 KTIADVAHDILGHPVDVQLVIAEGEETPSSEETDLG---FAFPPLFRNPSPAPAPQRERM 117 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S L+ ++VFS ++ G +NR+A A ++AE + NPLF+ VGLGK Sbjct: 118 ------SDLNPKYVFSRYVVGPNNRMAHAACLAVAESPGREF-----NPLFLCGGVGLGK 166 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P+ ++ Y++ E F +AIR + + ++ R +D++L+DD+Q Sbjct: 167 THLMQAIGHYRLEICPDSKIFYVSTEQFTNDLIAAIRKDSMQSFREHYRAVDVMLVDDIQ 226 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ KQVV A+DRPPS++ L R+ SR G+ + D Sbjct: 227 FIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIADIQPPD 286 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--P 386 E R +IL+ + E + + EV+ ++A + T++ REL+GA + V S + P Sbjct: 287 LETRMAILQKK-----AEYENIRLPREVIEYIASSYTSNIRELEGALIRAVAYISISGLP 341 Query: 387 ILTAEIADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + IA L T T K+ + I V+ + I DL N R R + RQV Sbjct: 342 MTVENIAPVL------TPTTAKLEASPQTILLAVSDTFGIPIEDLKGNSRRREISVARQV 395 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 MYL + T S P+IG FG +DHTTVL++ KV + TD Sbjct: 396 GMYLMRQHTGLSLPKIGEEFGGKDHTTVLYSCEKVADLQRTD 437 >gi|91203534|emb|CAJ71187.1| similar to chromosomal replication initiator protein DnaA [Candidatus Kuenenia stuttgartiensis] Length = 472 Score = 214 bits (544), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 151/479 (31%), Positives = 249/479 (51%), Gaps = 44/479 (9%) Query: 33 VNCESIFTIVSSR--LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ES + I S R ++ V P+ Y WF R++ S+ N + +VP + +K I YL Sbjct: 24 TSTESDYLIESIRAEIRKTVPPEQYDQWFSRMEISSITDNSITFAVPGDSIKNRICADYL 83 Query: 91 ETITKL-FQEEHSRIQGVEILVRSVALPSVEKTASSPSIT---KLSPINTNISKSPIILG 146 E I+ + ++ H + + + S EK P+IT +L + +IS + Sbjct: 84 EFISSIVYKLLHPSFE--------IDIISTEK----PAITTQMQLQSKDNDISNA----N 127 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 +++ V S ++ R+ F F+ + NR+A AA S+A + Y NPLFIH + G Sbjct: 128 ASSMNIVSLSSINKRYTFENFVVAAYNRMAHAAAISVAGSPGYAY-----NPLFIHGASG 182 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI N I +Q L+ YL+ E+F+ + SAI+ N + RN+D+LL+D Sbjct: 183 LGKTHLMHAINNF-ILQQGRLKTFYLSCEHFVNHYISAIQSNNMEAFRKFYRNVDVLLMD 241 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF + + EF H N+L + KQ+V ++ PP + ++ R+ SR + G+ + Sbjct: 242 DIQFFENSYGSREEFFHTFNALYNDGKQIVITSNYPPESIAYMEDRLVSRFKWGLVCGIS 301 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 E R +I++ R A + ++ E +++A + + REL+GA +L + A Sbjct: 302 TPSLETRAAIVEKRAAAWN-----IKVSHESAVYLAENIPGNIRELEGAIARL---SNEA 353 Query: 386 PILTAEIADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 ++ + + + +G K + IE + ++K +N+S ++LLS RR RTV PRQ Sbjct: 354 KATNNAVSFDFIRKVSREISGSKKTVSIEAVLGAISKKFNVSVSELLSKRRTRTVALPRQ 413 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL-----KKEVELLK 497 +AM+LS+ +T S EIG G RDH+TV+H + K D L K E ELLK Sbjct: 414 IAMHLSRKLTNMSLTEIGGYLGGRDHSTVIHGDETIIKKAGNDKNLSFIIQKLEGELLK 472 >gi|188590796|ref|YP_001795396.1| chromosomal replication initiation protein [Cupriavidus taiwanensis LMG 19424] gi|226735798|sp|B2AFZ7|DNAA_CUPTR RecName: Full=Chromosomal replication initiator protein DnaA gi|170937690|emb|CAP62674.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Cupriavidus taiwanensis LMG 19424] Length = 589 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 124/345 (35%), Positives = 191/345 (55%), Gaps = 13/345 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F+ G +N++A AA +A Y NPL+++ VGLGKTHL+ +I Sbjct: 254 LNPILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHSIG 308 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 309 NHMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRT 368 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR +IL Sbjct: 369 QEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAIL 428 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADE 395 + A +N+ EEV VA+ + ++ REL+GA + L F + +T E+ E Sbjct: 429 MKKAAAE-----NVNVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGKDITIEVTRE 483 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T + Sbjct: 484 ALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQK 542 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 543 SLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 587 >gi|124025331|ref|YP_001014447.1| chromosomal replication initiation protein [Prochlorococcus marinus str. NATL1A] gi|166214689|sp|A2C122|DNAA_PROM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|123960399|gb|ABM75182.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. NATL1A] Length = 464 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 142/467 (30%), Positives = 248/467 (53%), Gaps = 17/467 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++T V L+ + Y +W + +F + L P +F W++ Y +TI + Sbjct: 5 DELWTKVQKLLQKNLSKPSYETWIRPAEFFDFKDGCLTLLAPNSFSSDWLRKNYSQTIEE 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + E V I V+ + + S + + I T S++ + KQT F Sbjct: 65 IASETFGHEVKVHIKVKEEFSSNKSNKKKNFSNVEANSIAT--SENSDVKSKQTPIKKFL 122 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI VGLGKTHL+Q+ Sbjct: 123 PSLNLRYVFNRFVVGPNSRMAHAAAMAVAEAPGREF-----NPLFICGGVGLGKTHLMQS 177 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + ++ P +V Y++ E F AIR + ++ R DL+L+DD+QF++GK Sbjct: 178 IGHYRLEIDPGAKVAYVSTETFTNDLIVAIRKDGMQAFRNRYREADLILVDDIQFIEGKE 237 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ +Q+V +DRPPS++ L R+ SR G+ + D E R + Sbjct: 238 YTQEEFFHTFNALHEAGRQIVLTSDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMA 297 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL+ + E ++ + +++ +A T++ REL+GAF + V +FA I + Sbjct: 298 ILQKK-----AEHERMRLPRDLIQFIAGRFTSNIRELEGAFTRAV---AFASITGLPMTV 349 Query: 395 ELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E ++ +++ TG+ +++ + + VA+ + ++ ++ S R R V + RQV MYL + T Sbjct: 350 ESVAPMLDPTGQGVEVKPKQVLEKVAEVFGVTEEEMRSPSRRRPVSQARQVGMYLMRHGT 409 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG +DHTTV++A+ +VEK L ++ L +V+ +K L+ Sbjct: 410 DLSLPRIGESFGGKDHTTVMYAIEQVEKKLSSEPQLASQVQKVKDLL 456 >gi|81251072|gb|ABB69875.1| DNA replication initiator protein [Nitrosospira sp. NRS527] Length = 475 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 141/462 (30%), Positives = 240/462 (51%), Gaps = 36/462 (7%) Query: 55 YASWFQRLKF---HSVLHNIVHLSVPTNFLKAWIKNRYLETITKL----------FQEEH 101 + +W + L+ H+ + + P F+ W+K+ +L I ++ FQ + Sbjct: 24 FNTWIKPLRLEVSHNTHESTAVVIAPNRFVMQWVKDNFLSRIEQMAGLHFPQAIRFQLKL 83 Query: 102 SRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + V+ VR+V ALPS T SS S P+ +S + + S Sbjct: 84 ADPISVKTTVRAVENTDAALPSA--TPSSNSAAFGVPV---VSVQKFAMDAREKREKNPS 138 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F+ F+ G +N++A A +AE Y NP FI+ VGLGKTHL+QAI Sbjct: 139 RLNPSFTFNNFVTGKANQLARAGAIQVAERPGTAY-----NPFFIYGGVGLGKTHLIQAI 193 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N ++ +V Y+ +E ++ A + + K ++D+LLIDD+QF GK Sbjct: 194 GNFVLEHNSTAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLDVLLIDDIQFFGGKNR 253 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF + N+L+++ +QV+ D P E+ ++ R+ SR G++V + + EMR +I Sbjct: 254 TQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWGLTVAVEPPELEMRVAI 313 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + + ++E V +A+ + ++ REL+GA +++ F L+ ++A Sbjct: 314 LLKKALMEN-----IVLDENVAFFIAKHIRSNVRELEGALKRVLAYSRFTGHSLSLDLAR 368 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + +++ IE+IQ+ VA +Y I ++ S +R R V RPRQ+AM ++K +TP Sbjct: 369 EALKDLLAV-QNRQISIENIQKTVADYYKIKGAEMYSKKRSRIVARPRQMAMAMAKELTP 427 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 428 LSLPDIGEAFGGRDHTTVLHGHRKIAELRASDPAINRDFNAL 469 >gi|325528073|gb|EGD05285.1| chromosomal replication initiation protein [Burkholderia sp. TJI49] Length = 365 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 199/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 28 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 82 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 83 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 142 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 143 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 202 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 203 IL-----MRKAQSEGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 257 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 258 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 316 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 317 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 363 >gi|313681131|ref|YP_004058869.1| chromosomal replication initiator protein dnaa [Sulfuricurvum kujiense DSM 16994] gi|313153991|gb|ADR32669.1| chromosomal replication initiator protein DnaA [Sulfuricurvum kujiense DSM 16994] Length = 442 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 132/472 (27%), Positives = 244/472 (51%), Gaps = 44/472 (9%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETIT 94 SI V + LK ++ Y + ++L + NI P + W++ ++ + I Sbjct: 3 SIGKQVLNALKGEINEIDYQRYIKQLTYDEAESKSNIAVFRAPNTLIANWVRTKFADKIA 62 Query: 95 KLFQEEHSRIQGVEILVRSVAL-PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 LF+ + + V IL++S ++ SV+ T + P+I + Sbjct: 63 HLFEIKTNVKPTVSILIQSTSVQSSVQNTVAVPNIERPG--------------------- 101 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 GS L+ F F F+ G SN A AA++++E Y NPLFI+ VGLGKTHL+ Sbjct: 102 -GSLLNPSFTFQNFVVGDSNNFAFIAAKNVSEKPGVVY-----NPLFIYGGVGLGKTHLM 155 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 Q++ N + + V+Y + E F+ F + + KD R DLLLIDD+QFL Sbjct: 156 QSVGNVMLSQGKT--VIYTSVEQFLNDFTRHLSNRTMDRFKDKYRKCDLLLIDDIQFLSN 213 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K IQ EF H ++L + KQ++ +D+PP ++ L+ R++SR + G+ + + E + Sbjct: 214 KNQIQEEFFHTFDALRNENKQIIITSDKPPKKIGGLEERLKSRFESGLVADIQPPELETK 273 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 I+K + I+ ++ ++ EV+ +VA + + RE++G ++L ++++ ++ +I Sbjct: 274 IEIIKKKCEIN-----RVKLDREVINYVATIIENNTREIEGILSKL---NAYSQLMGVDI 325 Query: 393 ADELLSHLVNTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E +++ +K + + I VAK NI +++ S R +V R++A+YLS Sbjct: 326 TIEFARNVLKEQMAEKRSNITTDLIMDTVAKELNIKPSEIRSKSRNSNIVYARRIAIYLS 385 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +TP S P++ + FG +DHT V H ++K++++++ D + ++E L +S Sbjct: 386 RTLTPNSMPQLAQYFGMKDHTAVSHTMKKIQELMKNDEDFRVKIEELSNKVS 437 >gi|306826187|ref|ZP_07459522.1| DNA-directed DNA replication initiator protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431663|gb|EFM34644.1| DNA-directed DNA replication initiator protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 453 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/354 (36%), Positives = 200/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + IE IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDARQILVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ EVE +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEVEAIKKKI 452 >gi|266620978|ref|ZP_06113913.1| ribosomal subunit interface protein [Clostridium hathewayi DSM 13479] gi|288867359|gb|EFC99657.1| ribosomal subunit interface protein [Clostridium hathewayi DSM 13479] Length = 308 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 112/311 (36%), Positives = 191/311 (61%), Gaps = 11/311 (3%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN---L 253 NPLFI+ VGLGKTHL+ +I + +K PN +V+Y+T+E F AIR+ + Sbjct: 1 NPLFIYGGVGLGKTHLMHSIGHFILKNNPNAKVLYVTSEKFTNELIDAIRNKNNFSPTEF 60 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 +D R D+LLIDD+QF+ GK Q EF H N+L +S KQ++ ++D+PP E+E+L+ R+ Sbjct: 61 RDKYRTNDVLLIDDIQFIIGKESTQEEFFHTFNALYESKKQIIISSDKPPKEIETLEERL 120 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 RSR + G++V + DYE R +IL+ + +E NI+ EV+ ++A + ++ REL+ Sbjct: 121 RSRFEWGLTVDIQSPDYETRMAILRKK-----EEMEGYNIDNEVIKYIATNIKSNIRELE 175 Query: 373 GAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA ++V +T E+A+E L +++ + +++ E + ++VA HY I+ D+ S Sbjct: 176 GALTKIVALSRLDNKEITVELAEEALKDIISPNDKREVTPELVIQVVADHYGITPLDICS 235 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE-KMLETDITLK 490 +R + +V PRQ+ MYL + + IG+ G RDHTT++H + K++ +++ D L Sbjct: 236 QKRNKEIVYPRQIVMYLCREIVGTPLQSIGKYLGGRDHTTIIHGIEKIKADVVKNDSNLI 295 Query: 491 KEVELLKRLIS 501 +++LK+ +S Sbjct: 296 NTLDILKKKLS 306 >gi|118474040|ref|YP_891139.1| chromosomal replication initiation protein [Mycobacterium smegmatis str. MC2 155] gi|152013510|sp|A0R7K1|DNAA_MYCS2 RecName: Full=Chromosomal replication initiator protein DnaA gi|152013511|sp|P0C557|DNAA_MYCSM RecName: Full=Chromosomal replication initiator protein DnaA gi|1321893|emb|CAA63248.1| dnaA [Mycobacterium smegmatis] gi|118175327|gb|ABK76223.1| chromosomal replication initiator protein DnaA [Mycobacterium smegmatis str. MC2 155] Length = 504 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 143/453 (31%), Positives = 239/453 (52%), Gaps = 48/453 (10%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W + +K + LSVPT F++ I+ E I + Q VE+ VR +A Sbjct: 43 AWLKLVKPLVIAEGFALLSVPTPFVQNEIERHLREPIVTALSRKLG--QRVELGVR-IAT 99 Query: 117 PSVEKTASSPSITKLSPINTNISKSPI------------ILGKQTISPVFGSP------- 157 P+ E + S SP ++ P + +++ F P Sbjct: 100 PTDEPEDAPDSFAD-SPAPASVPAGPADADEIDDDRDARVNAQESWPKYFSRPEPDTSSD 158 Query: 158 ------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI GLGKTH Sbjct: 159 DSNAVNLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTH 213 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A N + + P +RV Y++ E F F +++RD+ + K S R+ID+LL+DD+QF+ Sbjct: 214 LLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKASFKRSYRDIDILLVDDIQFI 273 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 +GK IQ EF H N+L +S KQ+V ++DRPP +L +L+ R+R+R + G+ + + E Sbjct: 274 EGKEGIQEEFFHTFNTLHNSNKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELE 333 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--- 387 R +IL+ + + +L++ ++VL +A ++ + REL+GA L+ +FA + Sbjct: 334 TRIAILRKKAQMD-----RLDVPDDVLELIASSIERNIRELEGA---LIRVTAFASLNKT 385 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ +L L+ T ++ I + A+++ + +L + R + + RQ+AM Sbjct: 386 RIDRSLAEVVLRDLIADATTMQISTAAIMAVTAEYFETTVEELRGPGKTRALAQSRQIAM 445 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 YL + +T S P+IG+ FG RDHTTV++A +K+ Sbjct: 446 YLCRELTDLSLPKIGQAFG-RDHTTVMYAEKKI 477 >gi|306828596|ref|ZP_07461790.1| DNA-directed DNA replication initiator protein [Streptococcus mitis ATCC 6249] gi|304429204|gb|EFM32290.1| DNA-directed DNA replication initiator protein [Streptococcus mitis ATCC 6249] Length = 453 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 200/356 (56%), Gaps = 19/356 (5%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELLSHLVNTGETKKM---RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T +IA E + + ++M IE IQ V Y +S ++ RRV+ +V RQV Sbjct: 339 ITIDIAAEAIR--ARKQDARQMLVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQV 396 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ EVE +K+ I Sbjct: 397 AMYLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEVESIKKKI 452 >gi|119485656|ref|ZP_01619931.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106] gi|119456981|gb|EAW38108.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106] Length = 452 Score = 213 bits (543), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 150/478 (31%), Positives = 254/478 (53%), Gaps = 39/478 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ ES++ V RL+ Q+G + +W + + ++ + + P F + W++ Y Sbjct: 1 MEISLESLWHQVLDRLQVQLGGPTFDTWIKTASAERLENHCLVIRTPNPFARNWLQKHYK 60 Query: 91 ETITKLFQEEHSRIQG--VEILVRSVALPSVEKTASS---PSITKLSPINTNISKSPIIL 145 E I + Q+ I G VEI V + ++++ S PS +P N + K P Sbjct: 61 EIIAEAAQD----ILGYPVEIYVTTETQMTLDQAKSQRVWPSTVTETPSNQRL-KPP--- 112 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 L+S++VFS F+ G+++R+A AA ++AE + NPLF+ V Sbjct: 113 -----------NLNSKYVFSRFVVGANSRLAHAAALAVAESPGREF-----NPLFLCGGV 156 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAI + I+ P+ +V Y++ E F +AIR + + +D R D+LL+ Sbjct: 157 GLGKTHLMQAIGHYRIEINPDAKVFYVSTEKFTNDLIAAIRKDSMQSFRDHYRAADVLLV 216 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF++GK Q EF H N+L ++ KQVV A+DRPP+++ L R+ SR G+ + Sbjct: 217 DDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPNQIPRLQERLCSRFSMGLVADI 276 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + E + ++E V+ ++A T++ REL+GA + V S Sbjct: 277 QPPDLETRMAILQKK-----AEYENVRLSEGVVEYIASRYTSNIRELEGALIRAVAYTSI 331 Query: 385 API-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + +T E +LS E+ E + ++VA+ + +S DL R R + RQ Sbjct: 332 SGLPMTVESIAPVLSPAEQPQESSP---EAVIQIVAETFKVSVEDLKGTSRRREISLARQ 388 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 V+MYL + T S P+IG FG +DHTTV+++ K+ ++ D+ L + + L I+ Sbjct: 389 VSMYLMRQHTDLSLPKIGELFGGKDHTTVMYSCEKITQLRNKDLELAQTLRQLSDQIN 446 >gi|78064659|ref|YP_367428.1| chromosomal replication initiation protein [Burkholderia sp. 383] gi|123729088|sp|Q39L82|DNAA_BURS3 RecName: Full=Chromosomal replication initiator protein DnaA gi|77965404|gb|ABB06784.1| chromosomal replication initiator protein, DnaA [Burkholderia sp. 383] Length = 525 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 188 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 242 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 243 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 302 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 303 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 362 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 363 ILMRK---AQSE--GVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 417 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 418 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 476 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 477 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 523 >gi|113473943|ref|YP_720004.1| chromosomal replication initiation protein [Trichodesmium erythraeum IMS101] gi|122965345|sp|Q11AE3|DNAA_TRIEI RecName: Full=Chromosomal replication initiator protein DnaA gi|110164991|gb|ABG49531.1| chromosomal replication initiator protein DnaA [Trichodesmium erythraeum IMS101] Length = 456 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 139/472 (29%), Positives = 256/472 (54%), Gaps = 32/472 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ ++++ V RL+ Q+ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MEIYLDNLWDQVLERLQLQLSKPTFETWIKTATAEQLENNCLVIRAPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +TI + + I G VEI + + + K S ++ +N ILG+ Sbjct: 61 KTIADVVHD----ILGYPVEIYLTTFLVEDSRKNDSGLIWSEHKSVN--------ILGEN 108 Query: 149 -TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +I + L+++++FS F+ G +NR+A A+ ++AE + NPLF+ VGL Sbjct: 109 LSIPKPLPANLNAKYMFSRFVVGPNNRMAHAASLAVAESPGQEF-----NPLFLCGGVGL 163 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI + + P+ ++ Y++ E F +AIR + ++ R D+LL+DD Sbjct: 164 GKTHLMQAIGHYRLDIFPHSQIFYVSTEKFTNDLIAAIRKDSLQGFREHYRAADVLLVDD 223 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK Q EF H N+L ++ KQVV A+DRPP+++ SL R+ SR G+ + Sbjct: 224 IQFIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPNQIPSLQERLCSRFSMGLIADIQA 283 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL + + E + + +V+ ++A ++ REL+GA ++V ++ Sbjct: 284 PDLETRMAIL-----LKKSEYENMVLPRDVIEYIATRYPSNIRELEGALTRVV---TYIS 335 Query: 387 ILTAEIADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 I + E ++ ++N +T+K+ E + ++V++++N+S DL + R R + RQV Sbjct: 336 ISGLPMTVENIAPILNP-KTEKLEASPEAVIKVVSENFNLSIEDLKGSSRKREITLARQV 394 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 MYL + T S P+IG FG +DHTTVL++ K+ ++ +D+ L + + L Sbjct: 395 GMYLMRQHTDLSLPKIGEVFGGKDHTTVLYSCDKISQLQNSDLNLVQTIRQL 446 >gi|160946604|ref|ZP_02093807.1| hypothetical protein PEPMIC_00562 [Parvimonas micra ATCC 33270] gi|158446988|gb|EDP23983.1| hypothetical protein PEPMIC_00562 [Parvimonas micra ATCC 33270] Length = 471 Score = 213 bits (542), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 143/485 (29%), Positives = 269/485 (55%), Gaps = 32/485 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+ +S++ V + LK+++G +A+W + LK + + + +N++K +I + + Sbjct: 5 EIVVDSLWLEVCNELKDKLGESRFATWIEVLKPICYEDHKLMVLCQSNYIKTFINGHFKD 64 Query: 92 TI-----TKLFQ--EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 I +LF +E + + V + + L +++ + S S Sbjct: 65 YIEDAINNQLFPIIKEKTELLPV-VATDEIYLEAIKNSRGQASFFSKSGEKGLKKGKLKK 123 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + S F RF F+ F++G +N A+ AA+++A+ + Y NPLFI+ + Sbjct: 124 ISSSNNSLTFSD----RFTFNNFVKGKNNEFAMAAAEAVAKNPAGTY-----NPLFIYGN 174 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD---NCALNLKDSLRNID 261 GLGKTHL++AI + I + + +V+YL++E F +IRD N + RN+D Sbjct: 175 SGLGKTHLMKAIGH-EIHKNFDCKVLYLSSEKFTIDLIDSIRDKNQNSESEFRKKYRNVD 233 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QF+ GK Q EF H N L KQ++ ++DRPP E+++L+ R++SR G+ Sbjct: 234 VLLIDDIQFIAGKTATQEEFFHTFNELYSRNKQIIISSDRPPKEIKNLEDRLKSRFNMGL 293 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + D+E R +IL++++ K +P + ++ EVL +A + T+ REL+GA ++ Sbjct: 294 TVDIQPPDFETRMAILQDKV----KYEP-IALSNEVLEFIAMNIKTNIRELEGALINVLA 348 Query: 381 RHSF---APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + AP +T + +L+ +N +++ I+ I+ V+K++ I +DL S R + Sbjct: 349 HYKLKQDAP-MTVDYVKRILAQKLNELNRRELDIDLIKETVSKYFKIEVSDLSSKNRANS 407 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + PRQVAMYL + M + IG F ++DHTT++H V+K+++ ++T ++K+++E +K Sbjct: 408 IAYPRQVAMYLCRNMLDCALGNIGSAF-EKDHTTIMHGVKKIDEKIKTTESVKQDIENIK 466 Query: 498 RLISE 502 +++ + Sbjct: 467 KMLED 471 >gi|331265439|ref|YP_004325069.1| chromosomal replication initiator protein [Streptococcus oralis Uo5] gi|326682111|emb|CBY99727.1| chromosomal replication initiator protein [Streptococcus oralis Uo5] Length = 453 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 200/356 (56%), Gaps = 19/356 (5%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELLSHLVNTGETKKM---RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T +IA E + + ++M IE IQ V Y +S ++ RRV+ +V RQV Sbjct: 339 ITIDIAAEAIR--ARKQDARQMLVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQV 396 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ EVE +K+ I Sbjct: 397 AMYLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEVESIKKKI 452 >gi|17548159|ref|NP_521561.1| chromosomal replication initiation protein [Ralstonia solanacearum GMI1000] gi|38257696|sp|Q8XTV4|DNAA_RALSO RecName: Full=Chromosomal replication initiator protein DnaA gi|17430466|emb|CAD16939.1| probable chromosomal replication initiator protein dnaa [Ralstonia solanacearum GMI1000] Length = 522 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 129/372 (34%), Positives = 205/372 (55%), Gaps = 25/372 (6%) Query: 141 SPIILGKQTISPVFGSPLD------SRF----VFSTFIEGSSNRVALTAAQSIAEVDSHG 190 +P ++G + P +P+D SR F + G +N++A AA +A Sbjct: 162 APAVMGGLSAPP--AAPVDDTVHERSRLNPILTFDNLVTGKANQLARAAAVQVANNPGKS 219 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPL+++ VGLGKTHL+ AI N + P R+ Y+ AE ++ A + Sbjct: 220 Y-----NPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAF 274 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ +D Sbjct: 275 DDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEITGID 334 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR G++V + + EMR +IL + +Q E+ + + EEV VA+ + ++ R Sbjct: 335 DRLISRFDSGLTVAIEPPELEMRVAILMKK---AQAEN--VTVPEEVAFFVAKHLRSNVR 389 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA +++ +F +T E+ E L L+ T + +++ +E+IQ+ A YNI D Sbjct: 390 ELEGALRKILAYSNFHGKEITIEVTREALKDLL-TVQNRQISVENIQKTCADFYNIKVAD 448 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ D Sbjct: 449 MYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQ 508 Query: 489 LKKEVELLKRLI 500 L E+ +L++ + Sbjct: 509 LNHELHVLEQTL 520 >gi|315612159|ref|ZP_07887074.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis ATCC 49296] gi|315315720|gb|EFU63757.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis ATCC 49296] Length = 453 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 200/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + IE IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDARQILVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIEAIKKKI 452 >gi|295398135|ref|ZP_06808184.1| DNA-directed DNA replication initiator protein [Aerococcus viridans ATCC 11563] gi|294973654|gb|EFG49432.1| DNA-directed DNA replication initiator protein [Aerococcus viridans ATCC 11563] Length = 444 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 204/350 (58%), Gaps = 18/350 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F+ G N++A AA ++AE Y NPLF VGLGKTHL+QAI Sbjct: 108 LNPKYTFDNFVVGEGNKMAHAAALAVAEGPGRDY-----NPLFFFGGVGLGKTHLMQAIG 162 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + ++ PN ++ Y+++E F F +AIR N R +D+LL+DD+QF+ K Sbjct: 163 HEVLRTNPNAKIKYVSSETFTNDFINAIRKNTTDAFHQEYRTVDMLLVDDIQFIGNKQST 222 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L ++ K +V +DR S++ L+ R+ SR + G+S + D E R +IL Sbjct: 223 QEEFFHTFNVLYNNNKHIVLTSDRDASQIPELEDRLVSRFKQGLSTDITPPDLETRIAIL 282 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 +N+ ++ L I ++ L ++A + ++ REL+GA + +FA + LT Sbjct: 283 RNKANVN-----GLQIPDDTLSYIAGQIDSNIRELEGALTSV---QAFAVMNQEDLTPNT 334 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L + + ++ I +I VA+++N+ +DL +RVR +V PRQ+AMYLS+ + Sbjct: 335 AAKALRNYKSNVKSNSPTIPNILETVAQYFNLQVSDLKGKKRVRQIVVPRQIAMYLSREL 394 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S P+IG+ FG +DHTTVLHA K++K ++ L+++V+ ++RL+ + Sbjct: 395 TDASLPKIGQEFGGKDHTTVLHAYDKIKKDIDEKSELERDVDSIRRLLEK 444 >gi|116617175|ref|YP_817546.1| chromosomal replication initiator protein DnaA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432906|ref|ZP_03914850.1| DNA-directed DNA replication initiator protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096022|gb|ABJ61173.1| DNA replication ATPase initiation [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351339|gb|EEJ41621.1| DNA-directed DNA replication initiator protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 448 Score = 213 bits (542), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 130/352 (36%), Positives = 195/352 (55%), Gaps = 20/352 (5%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F F+ GS N A A+++A+ Y NP I+ VGLGKTHL+QA Sbjct: 107 SDLNPDFTFEKFVIGSGNENAYAVARAVADEPGQVY-----NPYLIYGGVGLGKTHLMQA 161 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQG 273 I NA P+ + Y TAE F+ F ++R D K R++DLLL+DD+QF G Sbjct: 162 IGNAYAVSTPSAHIKYATAEDFLNDFTESLRAGDGATAAFKQEYRSVDLLLVDDIQFWSG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +Q EF + N L + KQ+V +D+ P+E+ L R+ SR + G+ + + D R Sbjct: 222 KEKVQEEFFNTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFEAGIMMDIQKPDLPTR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTA 390 +IL+N E L+I +VL +A + ++ R L+GAF++ R+ P T Sbjct: 282 VAILQNL-----SESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFEASLRYMNKPA-TK 335 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A ++L L N + K+ +E IQ++VA +Y + +DL S+ R + +V R VAMYL++ Sbjct: 336 ETAQQILGDL-NINQGFKITVERIQQVVADYYMQTIDDLKSSSRKKDLVTARHVAMYLTR 394 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IGR FG RDH++VLHA K+ + E+D K E+L L E Sbjct: 395 TLTNESLPDIGRSFGGRDHSSVLHATTKITEKSESDSRTK---EMLDALTDE 443 >gi|206558825|ref|YP_002229585.1| chromosomal replication initiation protein [Burkholderia cenocepacia J2315] gi|226735787|sp|B4E7D1|DNAA_BURCJ RecName: Full=Chromosomal replication initiator protein DnaA gi|198034862|emb|CAR50734.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia J2315] Length = 525 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 188 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 242 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 243 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 302 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 303 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 362 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 363 ILMRK---AQSE--GVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 417 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 418 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 476 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 477 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 523 >gi|307710359|ref|ZP_07646800.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK564] gi|307618951|gb|EFN98086.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK564] Length = 453 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+G+ N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGSINDITLIARVKNIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQNEVGNFYGVSVKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ + L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDENDNLRLEIESIKKKI 452 >gi|119355858|ref|YP_910502.1| chromosomal replication initiation protein [Chlorobium phaeobacteroides DSM 266] gi|119353207|gb|ABL64078.1| chromosomal replication initiator protein DnaA [Chlorobium phaeobacteroides DSM 266] Length = 490 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 142/472 (30%), Positives = 245/472 (51%), Gaps = 38/472 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ ++ P Y +WF +K + + + + VP+ F WI+ Y + ++ + Sbjct: 35 IREKINPLAYKTWFSPIKPVNFSGSELTIQVPSQFFYEWIEENY----SSFLKQALKDVI 90 Query: 106 GVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPI-------ILGKQTISPV---F 154 G E L+ S+ + +K+ P +L +T +S I K+ F Sbjct: 91 GSEAKLMYSIVM---DKSQGQPVTIELPHQSTPLSACSSDSSESTQIKNKEAFEKNLQRF 147 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ ++VF T I G N +A A++S+A+ + G NPL I+ VGLGKTH++Q Sbjct: 148 ETHLNPKYVFETLIRGDCNSLAFAASKSVAQ--NPGLNA--FNPLVIYGGVGLGKTHMMQ 203 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N+ K + +V+Y+++E F F +AI++ RNID+L+IDD+QF GK Sbjct: 204 AIGNSVRKNCLSEKVLYVSSEKFAVDFVNAIQNGKIQEFSSFYRNIDVLIIDDIQFFAGK 263 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q E H+ N+L + KQ++ ++DRP +++ ++ R+ SR G+S + DYE R Sbjct: 264 EKTQEEIFHIFNTLHQTNKQIILSSDRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRK 323 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-----L 388 +I+ ++L E +N++E V+ +A VT + REL+G +L+ S Sbjct: 324 AIILSKL-----EQSGVNLDESVIEFIATNVTENVRELEGCIVKLLAAQSLDNREIDLHF 378 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +++ H TK++ ++ I++ V + I+ NDL + + + RQ+AMYL Sbjct: 379 TKSTLKDIIRHT-----TKQLTLDTIEKAVCSFFAITPNDLKGKSKKKEIATGRQIAMYL 433 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K +T S IG FG RDH+TV+HAV V +E +K++E LK+ I Sbjct: 434 AKNLTESSLKTIGLHFGGRDHSTVIHAVNTVGNRMEQQSDERKKIEELKKRI 485 >gi|322375216|ref|ZP_08049730.1| replication initiation protein DnaA [Streptococcus sp. C300] gi|321280716|gb|EFX57755.1| replication initiation protein DnaA [Streptococcus sp. C300] Length = 453 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 200/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKNIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + IE IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDARQILVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIEAIKKKI 452 >gi|86132708|ref|ZP_01051300.1| chromosomal replication initiator protein DnaA [Dokdonia donghaensis MED134] gi|85816662|gb|EAQ37848.1| chromosomal replication initiator protein DnaA [Dokdonia donghaensis MED134] Length = 475 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 145/490 (29%), Positives = 255/490 (52%), Gaps = 35/490 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +S++ S +K+ + P Y +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MTLTAQSVWDNCLSFIKDNITPQAYKTWFEPIKAVKLTDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEI-LVRSVAL--------PSVEKTASSPSITKLS-----PI-- 134 KL + +++ G LV + + P E+ S+ T S P+ Sbjct: 61 ----KLLKVALNKVLGENAKLVYVIKMENTYGNNQPFTERIPSANRSTMKSQEVDAPLKN 116 Query: 135 -NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 N + +I G + + S L+ + F F+EG SNR+A +A ++A + G T+ Sbjct: 117 KNPELKNPFVIPGIRNLQ--IESQLNPNYNFENFLEGDSNRLARSAGMAVA--NKPGGTS 172 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPL I VGLGKTHL AI + P V+Y++AE F ++ +++ N + Sbjct: 173 --FNPLLIFGGVGLGKTHLAHAIGVQIKDKYPAKTVLYISAEKFTQQYIESVKKNNRNDF 230 Query: 254 KDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ Sbjct: 231 IHFYQVIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRL 290 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 SR + G+S L +E R +I+K +L E P EE++ +A + T+ REL+ Sbjct: 291 LSRFKWGLSAELQHPSFETRIAIIKQKLYQDGVEMP-----EEIVEFLANNIKTNVRELE 345 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA L+ SF +T ++A +++ + V + +++ I+ IQ++V+ ++ + L S Sbjct: 346 GAIISLIAHSSFNKKEITLDLAKKIVDNYVKHTK-REVSIDYIQKIVSDYFQMDVETLQS 404 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 R R +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + TD +K Sbjct: 405 KTRKRHIVQARQLAMFFAKKLTKASLASIGSQIGQRDHATVLHACKTVDNLASTDKQFRK 464 Query: 492 EVELLKRLIS 501 VE L + +S Sbjct: 465 YVEDLGKKLS 474 >gi|154503049|ref|ZP_02040109.1| hypothetical protein RUMGNA_00871 [Ruminococcus gnavus ATCC 29149] gi|153796290|gb|EDN78710.1| hypothetical protein RUMGNA_00871 [Ruminococcus gnavus ATCC 29149] Length = 456 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 121/362 (33%), Positives = 211/362 (58%), Gaps = 18/362 (4%) Query: 147 KQTISPVF-GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 KQ + +F + L+ ++ F TF+ GS+N A A+ ++A+ Y NPLF++ V Sbjct: 98 KQQSNAIFEQANLNPKYTFDTFVVGSNNNFAHAASLAVADSPGEIY-----NPLFLYGGV 152 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALN-LKDSLRN 259 GLGKTHL+ +IA+ +++ P +V+Y+T+E F A++ + A+ ++ RN Sbjct: 153 GLGKTHLMHSIAHFILEKDPTKKVLYVTSETFTNELIDALKIGKNGNELAMTTFREKYRN 212 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 D+LLIDD+QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + Sbjct: 213 NDVLLIDDIQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEW 272 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + DYE R +IL+ + + E + +I +EV+ ++A +T++ REL+G+ N+L Sbjct: 273 GLIADISSPDYETRMAILRKKEELDGLE--RYHIPDEVMQYIANNITSNIRELEGSLNKL 330 Query: 379 VFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 + + PI +A E L +++ T+++ E I +V+ H+N+ +L +R Sbjct: 331 IALANLENKPI-DIPLAAEALKDMISPNNTREITPELIIEVVSDHFNVPAAELKGKKRNA 389 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V PRQ+ MYL + MT IG G +DH +V H V+K+E ++TD L V ++ Sbjct: 390 EIVLPRQIVMYLCRKMTDTPLKTIGLILGGKDHASVSHGVKKIEHDVKTDEALNNTVNII 449 Query: 497 KR 498 K+ Sbjct: 450 KK 451 >gi|332290651|ref|YP_004429260.1| chromosomal replication initiator protein DnaA [Krokinobacter diaphorus 4H-3-7-5] gi|332168737|gb|AEE17992.1| chromosomal replication initiator protein DnaA [Krokinobacter diaphorus 4H-3-7-5] Length = 475 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 142/490 (28%), Positives = 254/490 (51%), Gaps = 35/490 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +S++ S +K+ + P Y +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MTLTAQSVWDNCLSFIKDNITPQAYKTWFEPIKAVKLTDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS--PSITKLSPINTNISKSPIILGK- 147 KL + +++ G + V + +E T + P K+ N + KS + Sbjct: 61 ----KLLKVALNKVLGEN--AKLVYVIRMENTYGNNQPFTEKIPSANRSTMKSQDVDAPF 114 Query: 148 QTISPVFGSP--------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + +P +P L+ + F F+EG SNR+A +A ++A + G T+ Sbjct: 115 KNKNPELKNPFVIPGIRNLQIESQLNPNYNFDNFLEGDSNRLARSAGMAVA--NKPGGTS 172 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPL + VGLGKTHL AI + P V+Y++AE F ++ +++ N + Sbjct: 173 --FNPLLVFGGVGLGKTHLAHAIGVQIKDKYPAKTVLYISAEKFTQQYIESVKKNNRNDF 230 Query: 254 KDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ Sbjct: 231 IHFYQVIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRL 290 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 SR + G+S L +E R +I+K +L E P EE++ +A + T+ REL+ Sbjct: 291 LSRFKWGLSAELQHPSFETRIAIIKQKLYQDGVEMP-----EEIVEFLANNIKTNVRELE 345 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA L+ SF +T ++A +++ + V + +++ I+ IQ++V+ ++ + L S Sbjct: 346 GAIISLIAHSSFNKKEITLDLAKKIVDNYVKHTK-REVSIDYIQKIVSDYFQMDVETLQS 404 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 R R +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + TD +K Sbjct: 405 KTRKRHIVQARQLAMFFAKKLTKASLASIGSQIGQRDHATVLHACKTVDNLASTDKQFRK 464 Query: 492 EVELLKRLIS 501 VE L + +S Sbjct: 465 YVEDLGKKLS 474 >gi|94308946|ref|YP_582156.1| chromosomal replication initiation protein [Cupriavidus metallidurans CH34] gi|123384106|sp|Q1LSI9|DNAA_RALME RecName: Full=Chromosomal replication initiator protein DnaA gi|93352798|gb|ABF06887.1| chromosomal replication initiator protein DnaA [Cupriavidus metallidurans CH34] Length = 579 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 193/347 (55%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 242 SRLNPILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 296 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 297 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKN 356 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 357 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 416 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIA 393 IL + A +++ EEV VA+ + ++ REL+GA + L F + +T ++ Sbjct: 417 ILMKKAAAE-----NVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGKDITIDVT 471 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 472 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 530 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ + D L E+ +L++ + Sbjct: 531 QKSLPEIGELFGGRDHTTVLHAVRKIAEERSKDAQLNHELHVLEQTL 577 >gi|149198967|ref|ZP_01876008.1| chromosomal replication initiation protein [Lentisphaera araneosa HTCC2155] gi|149137962|gb|EDM26374.1| chromosomal replication initiation protein [Lentisphaera araneosa HTCC2155] Length = 470 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 150/480 (31%), Positives = 251/480 (52%), Gaps = 32/480 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN---IVHLSVPTNFLKAWIKNRY 89 + C++++ I+ + ++ + +FQ F S+ + + L+ N I++ Y Sbjct: 4 IECQAVWDILYPVISARISSPGFNKFFQE-SFASIDESGTFKISLNKGYNVFIDHIRDNY 62 Query: 90 LETITKLFQE------EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 L + + +E E + ++ L + AL +VE L PI + Sbjct: 63 LNLLRESLKECKHDLPEQIKDISIDALGQGEALYTVE--GQKEDKISLKPIIDKTRRRST 120 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 K+ +P P R+ F F+ G SNR+A +++++E S G++ NPLFI+ Sbjct: 121 ETPKELKAPN-NFPSSDRYSFKNFVVGDSNRLAFATSKAVSE--SPGFS---FNPLFIYG 174 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 S GLGK+HLL AIA ++ P R+ YL+AE F F +I++ N + RN+D+L Sbjct: 175 SSGLGKSHLLHAIAQETLSHNPYHRIEYLSAEEFSNIFIDSIKNQDGHNFRKRFRNVDIL 234 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+QFL+ K Q EF H N+L KQ+V +D P EL+ L+ R+ SR + G V Sbjct: 235 LLDDVQFLKNKTKTQEEFFHTFNALYSLNKQIVLTSDCQPHELDGLEKRLVSRFEHGQIV 294 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + ++E R +IL RL +++ ++I EVL +A + + R+L+GA +LV Sbjct: 295 DVLKPEFETRVAIL--RL---KRDSMNVHIPNEVLDFIASNIKSHIRKLEGALVRLV--- 346 Query: 383 SFAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 ++A + E+ A E+L + + + I I R VA+++++ D+L +R +++ Sbjct: 347 TYASTMGYEVNVSLAREVLGGQLENTSDRNLDITVILRQVAEYFDVGIKDILGKKRTQSI 406 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V PRQVAMYLS+ +T SFP I +F R H TVLH+ V + +E D K +V LK+ Sbjct: 407 VTPRQVAMYLSRNLTEESFPTIADQFR-RTHATVLHSCNAVNEQMELDQDFKDKVFFLKK 465 >gi|332662000|ref|YP_004444788.1| Chromosomal replication initiator protein dnaA [Haliscomenobacter hydrossis DSM 1100] gi|332330814|gb|AEE47915.1| Chromosomal replication initiator protein dnaA [Haliscomenobacter hydrossis DSM 1100] Length = 488 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 145/481 (30%), Positives = 254/481 (52%), Gaps = 41/481 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY---LETITKLFQEEHS 102 ++N V + +WF+ +K + N + + VP + W++ Y L+T + + Sbjct: 16 IRNNVNMQAFRTWFEPIKPVRLDGNALTIQVPNKYFYEWLEEHYVSLLKTSIRSQLGDKG 75 Query: 103 RIQGVEILV---------RSVALPSV-----EKTASSPSITKLSPINTNIS----KSPII 144 R++ +ILV +S+A + SS S++ P N+ K+P + Sbjct: 76 RLE-YQILVSDSREEERRKSIAGNGMGNNYSNGNGSSVSLSDQVPYYNNVDTDSIKNPFV 134 Query: 145 L---GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + K + P L+ + F +IEG NR+A +A +I+ G T+ NPL I Sbjct: 135 IPGIKKMKVDP----QLNPNYRFDNYIEGDCNRLARSAGHAISR--KPGQTS--FNPLVI 186 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 +VGLGKTHL QAI N + + P V+Y+++E F + + I++N ++ + ID Sbjct: 187 FGNVGLGKTHLAQAIGNEILDKFPTKTVLYVSSEKFTNQIIAGIKNNAINDVVTFYQLID 246 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L++DD+QFL+GK Q F H+ N L + KQ++ +DRPP +L+ ++ R+ SR + G+ Sbjct: 247 VLIVDDIQFLEGKKKTQDIFFHIFNQLHQNGKQIILTSDRPPKDLQDMEERLISRFKWGL 306 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S L D E R +IL+ ++ E I ++V + + + REL+G L+ Sbjct: 307 SADLQAPDLETRIAILEYKMMQEGVE-----IAQDVTEFICYNIKNNIRELEGVLISLIA 361 Query: 381 RHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + S + ++A E++ + V T K++ +E IQ++VA ++ + L R R++V Sbjct: 362 QSSLNRREIDIDLAKEVVRNFV-TEINKEITVEFIQKLVADYFKVPVETLNGKTRKRSIV 420 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RQ++MYL+K MT RS +G FG RDH+TV+++ R V+ ++ETD K+ V L++ Sbjct: 421 IARQLSMYLAKNMTDRSLKALGEVFGGRDHSTVIYSCRTVQDLMETDPFFKETVSDLEKK 480 Query: 500 I 500 I Sbjct: 481 I 481 >gi|257062755|ref|YP_003142427.1| chromosomal replication initiator protein DnaA [Slackia heliotrinireducens DSM 20476] gi|256790408|gb|ACV21078.1| chromosomal replication initiator protein DnaA [Slackia heliotrinireducens DSM 20476] Length = 501 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 141/493 (28%), Positives = 254/493 (51%), Gaps = 55/493 (11%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 V P ++F RL ++ + L+ T F K ++ RYL I + ++ G++ Sbjct: 23 VNPHQVDAYFSRLHPQAISEGFLVLTADTAFFKMQVEKRYLTHIIQALKD----TTGIDF 78 Query: 110 LVRSVALPSVEKTASSPSITKL------------------SPINTNI------------S 139 +V +E + P+ + PI+T + Sbjct: 79 MVE------IEVDETEPAPQPVVVQQPVFEPQQDVGLFPGQPISTQLVTETEPQPSCLTG 132 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + ++ I+ + L S F +F+ G+SN +A + A ++AE T NPL Sbjct: 133 EGSEAMMEEEIARSKAATLASSLTFESFVTGNSNMLAYSLAVAVAEAPGQPNT----NPL 188 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI----RDNCAL-NLK 254 FI+ GLGKTHLL+AI N ++ P + VVY+ + F+ + SA+ RD + N + Sbjct: 189 FIYGKSGLGKTHLLRAIQNYVMETNPTMDVVYIDSSEFLAEYTSAVTAHERDRKSFQNFQ 248 Query: 255 DSLRNIDLLLIDDMQFLQGKLIQHEFC-HLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + + D+LLIDD+QF QGK + L N L+D+ KQVV +ADR P ++ +D R + Sbjct: 249 NRFLDADMLLIDDVQFFQGKSATLDIVFQLFNHLVDAGKQVVLSADRAPKMID-IDERYK 307 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRL--AISQKEDPKLNINEEVLMHVARTVTTSGREL 371 SR G +V + + E++ I+KN + + E LNI +++ +++A +++ REL Sbjct: 308 SRFNQGATVNVDPPELEVKLGIIKNFINEYEATSESGPLNIPDDIQIYIAEISSSNVREL 367 Query: 372 DGAFNQLVF--RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 A +++F R+S + +T LL ++G TK++ I IQ V ++Y ++ +L Sbjct: 368 KSAVTKVIFQIRYSDSGEITLSEVKTLLEDHFSSGITKRLNIGMIQHEVEQYYKVTHAEL 427 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 + +R R +V RQVA+YL + M + IG++FG RDH+T++H+V+ +E + + + Sbjct: 428 IGVKRSRNIVFARQVAIYLCRNMLDIPYAAIGKKFGQRDHSTIMHSVKLIEDRMRSSREM 487 Query: 490 KKEVELLKRLISE 502 ++E+E++ ++I E Sbjct: 488 QEEIEIITKMIRE 500 >gi|170731357|ref|YP_001763304.1| chromosomal replication initiation protein [Burkholderia cenocepacia MC0-3] gi|226735786|sp|B1K0Y8|DNAA_BURCC RecName: Full=Chromosomal replication initiator protein DnaA gi|169814599|gb|ACA89182.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia MC0-3] Length = 525 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 188 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 242 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 243 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 302 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 303 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 362 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 363 ILMRK---AQSEG--VNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 417 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 418 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 476 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 477 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 523 >gi|148241930|ref|YP_001227087.1| chromosomal replication initiation protein [Synechococcus sp. RCC307] gi|147850240|emb|CAK27734.1| Chromosomal replication initiator protein dnaA [Synechococcus sp. RCC307] Length = 461 Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 143/468 (30%), Positives = 247/468 (52%), Gaps = 27/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ V + L++ + + +W + S + L P F W++ YL L Sbjct: 10 NLWDQVRAELQSNLSKPTFETWIRPAVCVSAEQRRLVLEAPNPFAAGWLRRNYL----GL 65 Query: 97 FQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 E S I G VE+ +++ S E S ++ +P +S+ +Q Sbjct: 66 IAEVASAISGGPVEVQIQAGDEASSEPVGSVEAMPAPAPTPLPVSQPGTPKTRQK----- 120 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ R+ F F+ G ++R+A AA ++AE + NPLF+ VGLGKTHL+Q Sbjct: 121 -SNLNPRYTFQRFVVGPNSRMAHAAALAVAESPGREF-----NPLFLCGGVGLGKTHLMQ 174 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ P+ RV Y++ E F AIR + +D R DL+++DD+QF++GK Sbjct: 175 AIGHYRLEIDPDSRVFYVSTETFTNDLILAIRKDGMQAFRDRYRAADLIMVDDIQFIEGK 234 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ +Q+V A+DRPPS+++ L R+ SR G+ + D E R Sbjct: 235 EYTQEEFFHTFNALHEAGRQIVIASDRPPSQIQRLQERLISRFSMGLIADIQAPDLETRM 294 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA 393 +IL + E ++ + +++ ++A T++ REL+GA + V +FA I + Sbjct: 295 AILHKK-----AEQEQMRLPRDLIQYIAGRFTSNIRELEGALTRAV---AFASITGLPMT 346 Query: 394 DELLSHLVNTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + ++ L+ TG + + + + VA+ + +S D+ S+ R R V + RQV M+L + Sbjct: 347 VDAVAPLLGTGMPEGDINPKVVLEKVAEVFGVSTEDMCSSSRKRAVSQARQVGMHLMRQC 406 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG FG +DHTTV++AV++VEK L ++ L +V+ +K L+ Sbjct: 407 TDLSLPKIGDHFGGKDHTTVMYAVQQVEKKLASNPALASQVQQVKDLL 454 >gi|291280548|ref|YP_003497383.1| chromosome replication initiator protein DnaA [Deferribacter desulfuricans SSM1] gi|290755250|dbj|BAI81627.1| chromosome replication initiator protein DnaA [Deferribacter desulfuricans SSM1] Length = 443 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 137/471 (29%), Positives = 248/471 (52%), Gaps = 37/471 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + I+ V KN + +W + +K + + + L P K W + +YL Sbjct: 1 MGSDKIWEEVLKEAKNHISEQEVNTWLKPIKVGELRGDFIQLIAPNRLYKNWFEEKYLNV 60 Query: 93 ITKLFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + K+F E S Q ++++ +S + +K ++ +++ I+ Sbjct: 61 VKKIFNETLSIEAQTIQVVTKS---STKQKKHTAQTVSSSVTID---------------- 101 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V+ + L+ ++ F F+ G+SN A A ++A+ H Y NPLFI+ VGLGKTH Sbjct: 102 -VYTTNLNKQYTFDNFVVGNSNNFAHAACMAVADGYFHTY-----NPLFIYGGVGLGKTH 155 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ A+ N +++ P LRV+Y+++E F SA++ ++ R +D+LL DD+QFL Sbjct: 156 LMHAVGNRLLEKFPKLRVLYISSENFTNEMISALKSKKMDEFREKYRKVDVLLFDDVQFL 215 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK EF + NSL DS KQ++ +D+ P+E+ ++ R+ +R G+ + E Sbjct: 216 AGKQRSTEEFFYTFNSLYDSQKQIILTSDKTPAEIPEMEERLTTRFAWGLIADIQPPSVE 275 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG-RELDGAFNQLVFRHSF--API 387 + +IL R + +++NE+V + +A + + REL GA +L SF PI Sbjct: 276 EKTAILMKRAELMN-----IDLNEKVALFIAENLKSDNVRELIGALIRLSAYSSFNGEPI 330 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T E+A + L + + K + + I ++V +++N+ ++L S +R +++ PRQ+AMY Sbjct: 331 -TIELAKKTLDRFL-IKKDKIITFDTILKVVTEYFNVKLSELKSKKRTKSIAYPRQIAMY 388 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 L + S EIG FG RDH+TVLH++ +EK L+ D L++ +++L++ Sbjct: 389 LMREKLNCSLSEIGEIFGGRDHSTVLHSINSIEKKLKKDKELQETIKILEK 439 >gi|161611268|ref|YP_294227.2| chromosomal replication initiation protein [Ralstonia eutropha JMP134] Length = 584 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 192/347 (55%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 247 SRLNPILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 301 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 302 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKN 361 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 362 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 421 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIA 393 IL + A +++ EEV VA+ + ++ REL+GA + L F + +T E+ Sbjct: 422 ILMKKAAAE-----NVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGRDITIEVT 476 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 477 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 535 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 536 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 582 >gi|293364516|ref|ZP_06611241.1| DNA-directed DNA replication initiator protein [Streptococcus oralis ATCC 35037] gi|307702806|ref|ZP_07639756.1| chromosomal replication initiator protein DnaA [Streptococcus oralis ATCC 35037] gi|291317024|gb|EFE57452.1| DNA-directed DNA replication initiator protein [Streptococcus oralis ATCC 35037] gi|307623662|gb|EFO02649.1| chromosomal replication initiator protein DnaA [Streptococcus oralis ATCC 35037] Length = 453 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/354 (36%), Positives = 200/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + IE IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDARQILVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIEAIKKKI 452 >gi|152991598|ref|YP_001357319.1| chromosomal replication initiation protein [Sulfurovum sp. NBC37-1] gi|151423459|dbj|BAF70962.1| chromosome replication initiator protein DnaA [Sulfurovum sp. NBC37-1] Length = 442 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 139/462 (30%), Positives = 233/462 (50%), Gaps = 42/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ Y + ++L + + NIV+ + P + WIK +Y + + LF+ ++ Sbjct: 11 LKKEISETEYERYIKKLVYDTRRSRSNIVYFNAPNMLVAKWIKTKYSDKLAHLFELQNEV 70 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +EI V EKT+ P++ + L+ Sbjct: 71 KPEIEITVGK----QTEKTSK-----------------PVVKQSNEKQHSKSTYLNPSLT 109 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +FI G SN+ A T A+S+AE Y NPLF++ VGLGKTHLLQAI N I Sbjct: 110 FESFIVGPSNQFAYTTAKSVAEKPGQIY-----NPLFLYGGVGLGKTHLLQAIGNYHIAL 164 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 V+Y T E FM F S +R ++ R DLLLIDD+QFL K Q EF H Sbjct: 165 GKT--VIYTTLEQFMNSFTSHLRSQTMDRFREKFRECDLLLIDDIQFLSRKEQTQEEFFH 222 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N L ++ KQ+V +DR P+++ L R+RSR + G+ + E + +I++ + + Sbjct: 223 TFNELYNTNKQIVITSDRQPNKIAGLVDRLRSRFEWGLMADIQPPGLETKIAIIQKKCEL 282 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN 402 + +N E++ +A + + RE++G +L ++ + +L +I + + + Sbjct: 283 D-----GIRLNHEIINFIATNMGDNIREIEGTIIKL---NALSSMLNQDITLDFAQNAIK 334 Query: 403 TGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 +K + I+DI ++V+K NI +D+ S +R + VV R+ A+YL++ +TP S P+ Sbjct: 335 DQLKEKKENISIDDIVKIVSKELNIKPSDIKSKKRTKNVVSARRTAIYLARNLTPNSMPQ 394 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 I FG +DHT + HA++K+ +++E D K +E L I+ Sbjct: 395 IALYFGMKDHTAISHAMKKINEIIENDENFKVLLEELSNKIN 436 >gi|116688025|ref|YP_833648.1| chromosomal replication initiation protein [Burkholderia cenocepacia HI2424] gi|166201863|sp|A0K2M8|DNAA_BURCH RecName: Full=Chromosomal replication initiator protein DnaA gi|116646114|gb|ABK06755.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia HI2424] Length = 525 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 188 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 242 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 243 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 302 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 303 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 362 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 363 ILMRK---AQSE--GVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 417 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 418 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 476 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 477 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 523 >gi|115350057|ref|YP_771896.1| chromosomal replication initiation protein [Burkholderia ambifaria AMMD] gi|172059068|ref|YP_001806720.1| chromosomal replication initiation protein [Burkholderia ambifaria MC40-6] gi|122324479|sp|Q0BJW1|DNAA_BURCM RecName: Full=Chromosomal replication initiator protein DnaA gi|226735785|sp|B1YPZ0|DNAA_BURA4 RecName: Full=Chromosomal replication initiator protein DnaA gi|115280045|gb|ABI85562.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria AMMD] gi|171991585|gb|ACB62504.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria MC40-6] Length = 525 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 188 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 242 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 243 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 302 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 303 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 362 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 363 ILMRK---AQSE--GVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 417 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 418 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 476 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 477 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 523 >gi|170697754|ref|ZP_02888841.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria IOP40-10] gi|170137369|gb|EDT05610.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria IOP40-10] Length = 525 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 188 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 242 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 243 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 302 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 303 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 362 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 363 ILMRK---AQSE--GVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 417 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 418 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 476 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 477 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 523 >gi|72117120|gb|AAZ59383.1| chromosomal replication initiator protein, DnaA [Ralstonia eutropha JMP134] Length = 611 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 192/347 (55%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 274 SRLNPILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 328 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 329 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKN 388 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 389 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 448 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIA 393 IL + A +++ EEV VA+ + ++ REL+GA + L F + +T E+ Sbjct: 449 ILMKKAAAE-----NVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGRDITIEVT 503 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 504 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 562 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 563 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 609 >gi|253754648|ref|YP_003027788.1| chromosomal replication initiator protein [Streptococcus suis BM407] gi|251817112|emb|CAZ54833.1| chromosomal replication initiator protein [Streptococcus suis BM407] Length = 444 Score = 213 bits (541), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 209/378 (55%), Gaps = 28/378 (7%) Query: 135 NTNISKSPIILGKQTISPV--------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 NT ++S I+ QT+ P S + S++ F+ F++G +N A AA ++++ Sbjct: 76 NTTNTRSSIVHQVQTLEPATPQETFKPVHSDIKSQYTFANFVQGDNNHWAKAAALAVSDN 135 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLFI GLGKTH+L AI N + P R+ Y+++E F+ F +R Sbjct: 136 LGELY-----NPLFIFGGPGLGKTHILNAIGNKVLADNPQARIKYVSSETFINEFLEHLR 190 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 N + K + RN+DLLLIDD+Q L+ K Q EF H N+L + KQ+V +DR P L Sbjct: 191 LNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHL 250 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ++L+ R+ +R + G++ + D+E R +IL+N+ E+ N E L ++A Sbjct: 251 DNLEERLVTRFKWGLTSEITPPDFETRIAILRNKC-----ENLPYNFTNETLSYLAGQFD 305 Query: 366 TSGRELDGAFNQLVFRHSFAPI-----LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVA 419 ++ R+L+GA + H A + ++ E+A E + T + + IE IQ V Sbjct: 306 SNVRDLEGALKDI---HLIATMRQLSEISVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVG 362 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 Y +S +L ++RV+ +V RQVAM+L++ MT S P+IG+ FG+RDHTTV+HA K+ Sbjct: 363 NFYGVSLKELKGSKRVQHIVHARQVAMFLAREMTDNSLPKIGKEFGNRDHTTVMHAYNKI 422 Query: 480 EKMLETDITLKKEVELLK 497 + +L D L+ E+ +K Sbjct: 423 KTLLLDDENLEIEITSIK 440 >gi|189499001|ref|YP_001958471.1| chromosomal replication initiation protein [Chlorobium phaeobacteroides BS1] gi|189494442|gb|ACE02990.1| chromosomal replication initiator protein DnaA [Chlorobium phaeobacteroides BS1] Length = 491 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 145/499 (29%), Positives = 251/499 (50%), Gaps = 39/499 (7%) Query: 18 AEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP 77 AE+T + V K + + ++ ++L NQ + +WF + N + + VP Sbjct: 11 AEQTTDATVTKGSAQTVWAACLDVLRNKLNNQA----FKTWFTPITPLLFSDNELTIEVP 66 Query: 78 TNFLKAWIKNRYLETITKLFQEEHSRIQGVE-ILVRSVALPSVEKTASSPSITKLSPINT 136 + F WI+ Y + + +E G E L+ S+ + +K+ S P +L + Sbjct: 67 SQFFYEWIEENYSNQLKQALKE----TLGAEGKLMYSIVM---DKSQSQPVTIELP--HQ 117 Query: 137 NISKS----PIILGKQTIS---------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSI 183 NI K+ I T S F S L+ ++ F T I G N +A A++S+ Sbjct: 118 NIPKADSGDEICSDGHTSSDKAFVTRHRTKFESHLNPKYTFDTLIRGDCNSLAFAASKSV 177 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 ++ NPL I+ VGLGKTH++QA+ N + + V+Y+++E F F + Sbjct: 178 SQNPGQN----AFNPLVIYGGVGLGKTHMMQAVGNHVRESHRSEYVLYVSSEKFAIDFVN 233 Query: 244 AIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPP 302 AI++ R +D+L+IDD+QF GK Q E H+ N+L S KQ++ ++DRP Sbjct: 234 AIQNGKIQEFSSFYRKMDVLIIDDIQFFAGKEKTQEEIFHIFNTLHQSNKQIILSSDRPI 293 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 E+ ++ R+ SR G+S + DYE R +I++++L E + ++E V+ +A Sbjct: 294 KEIRGIEERLISRFNWGLSADIQPPDYETRKAIIQSKL-----EQSGVTLDESVVEFIAT 348 Query: 363 TVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH 421 VT + RE++G +L+ HS F + + L ++ ++KK+ +E I++ + + Sbjct: 349 NVTQNVREIEGCIVKLLASHSLFNQEIDLQFTKMTLKDIIRI-QSKKLSLETIEKAICTY 407 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 ++I+ NDL + + + RQVAMYLSK +T S IG FG RDH+TV+H + Sbjct: 408 FSITPNDLKGKSKKKEIAAGRQVAMYLSKELTGSSLKTIGLHFGGRDHSTVIHGHNTIRN 467 Query: 482 MLETDITLKKEVELLKRLI 500 +E + ++E LK+ I Sbjct: 468 KVENSAETRGQIEELKKRI 486 >gi|171316345|ref|ZP_02905565.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria MEX-5] gi|171098474|gb|EDT43276.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria MEX-5] Length = 525 Score = 213 bits (541), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 188 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 242 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 243 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 302 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 303 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 362 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 363 ILMRK---AQSE--GVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 417 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 418 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 476 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 477 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 523 >gi|322386432|ref|ZP_08060061.1| DNA-directed DNA replication initiator protein [Streptococcus cristatus ATCC 51100] gi|321269518|gb|EFX52449.1| DNA-directed DNA replication initiator protein [Streptococcus cristatus ATCC 51100] Length = 451 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 137/400 (34%), Positives = 221/400 (55%), Gaps = 20/400 (5%) Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 G EI + V + A ++K + K+P + ++ P+ + L +++ F Sbjct: 66 GFEIFNDQITAKYVFEEAGHDLVSKYQ-LEEQAEKTPF---RPSLPPI-DTGLKAKYTFD 120 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F++G N A AA +++E + Y NPLFI+ GLGKTHLL AI N ++ P Sbjct: 121 NFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNAIGNQILENIP 175 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI--QHEFCHL 283 + RV Y+ AE F+ F +R N K R++DLLLIDD+Q L GK + Q EF + Sbjct: 176 DARVKYIPAETFINDFLEHLRLGDMDNFKKIYRSLDLLLIDDIQSLGGKKVSTQEEFFNT 235 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R +IL+N++ Sbjct: 236 FNALHGDNKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIAILRNKI--- 292 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPILTAEIADELL-SHL 400 E+ + L ++A ++ R+L+GA N L+ R +T +IA E + + Sbjct: 293 --ENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDITLIARVRNLKEITIDIAAEAIRARK 350 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 ++ + + IE IQ V Y +S ++ +RRV+ +V RQVAMYL++ +T S P+I Sbjct: 351 QDSSQVTVIPIEKIQSEVGNFYGVSVKEMKGSRRVQNIVLARQVAMYLARELTDNSLPKI 410 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 GR FG +DHTTV+HA K++ LETD +L+ E+E +K I Sbjct: 411 GREFGGKDHTTVIHAHGKIKNRLETDDSLRLEIENIKNKI 450 >gi|146319849|ref|YP_001197375.1| chromosomal replication initiation protein [Streptococcus suis 05ZYH33] gi|146322039|ref|YP_001199561.1| chromosomal replication initiation protein [Streptococcus suis 98HAH33] gi|253750924|ref|YP_003024065.1| chromosomal replication initiator protein [Streptococcus suis SC84] gi|253752823|ref|YP_003025963.1| chromosomal replication initiator protein [Streptococcus suis P1/7] gi|145690655|gb|ABP91161.1| ATPase involved in DNA replication initiation [Streptococcus suis 05ZYH33] gi|145692845|gb|ABP93350.1| ATPase involved in DNA replication initiation [Streptococcus suis 98HAH33] gi|251815213|emb|CAZ50777.1| chromosomal replication initiator protein [Streptococcus suis SC84] gi|251819068|emb|CAR44080.1| chromosomal replication initiator protein [Streptococcus suis P1/7] gi|292557465|gb|ADE30466.1| chromosomal replication initiator protein, DnaA [Streptococcus suis GZ1] gi|319757173|gb|ADV69115.1| chromosomal replication initiator protein [Streptococcus suis JS14] Length = 457 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 209/378 (55%), Gaps = 28/378 (7%) Query: 135 NTNISKSPIILGKQTISPV--------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 NT ++S I+ QT+ P S + S++ F+ F++G +N A AA ++++ Sbjct: 89 NTTNTRSSIVHQVQTLEPATPQETFKPVHSDIKSQYTFANFVQGDNNHWAKAAALAVSDN 148 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLFI GLGKTH+L AI N + P R+ Y+++E F+ F +R Sbjct: 149 LGELY-----NPLFIFGGPGLGKTHILNAIGNKVLADNPQARIKYVSSETFINEFLEHLR 203 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 N + K + RN+DLLLIDD+Q L+ K Q EF H N+L + KQ+V +DR P L Sbjct: 204 LNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHL 263 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ++L+ R+ +R + G++ + D+E R +IL+N+ E+ N E L ++A Sbjct: 264 DNLEERLVTRFKWGLTSEITPPDFETRIAILRNKC-----ENLPYNFTNETLSYLAGQFD 318 Query: 366 TSGRELDGAFNQLVFRHSFAPI-----LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVA 419 ++ R+L+GA + H A + ++ E+A E + T + + IE IQ V Sbjct: 319 SNVRDLEGALKDI---HLIATMRQLSEISVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVG 375 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 Y +S +L ++RV+ +V RQVAM+L++ MT S P+IG+ FG+RDHTTV+HA K+ Sbjct: 376 NFYGVSLKELKGSKRVQHIVHARQVAMFLAREMTDNSLPKIGKEFGNRDHTTVMHAYNKI 435 Query: 480 EKMLETDITLKKEVELLK 497 + +L D L+ E+ +K Sbjct: 436 KTLLLDDENLEIEITSIK 453 >gi|107024098|ref|YP_622425.1| chromosomal replication initiation protein [Burkholderia cenocepacia AU 1054] gi|105894287|gb|ABF77452.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia AU 1054] Length = 561 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 224 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 278 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 279 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 338 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 339 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 398 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 399 ILMRK---AQSEG--VNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 453 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 454 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 512 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 513 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 559 >gi|223933958|ref|ZP_03625917.1| chromosomal replication initiator protein DnaA [Streptococcus suis 89/1591] gi|302023110|ref|ZP_07248321.1| chromosomal replication initiation protein [Streptococcus suis 05HAS68] gi|223897377|gb|EEF63779.1| chromosomal replication initiator protein DnaA [Streptococcus suis 89/1591] Length = 457 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 209/378 (55%), Gaps = 28/378 (7%) Query: 135 NTNISKSPIILGKQTISPV--------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 NT ++S I+ QT+ P S + S++ F+ F++G +N A AA ++++ Sbjct: 89 NTTNTRSSIVHQVQTLEPATPQETFKPVHSGIKSQYTFANFVQGDNNHWAKAAALAVSDN 148 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLFI GLGKTH+L AI N + P R+ Y+++E F+ F +R Sbjct: 149 LGELY-----NPLFIFGGPGLGKTHILNAIGNKVLADNPQARIKYVSSETFINEFLEHLR 203 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 N + K + RN+DLLLIDD+Q L+ K Q EF H N+L + KQ+V +DR P L Sbjct: 204 LNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHL 263 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ++L+ R+ +R + G++ + D+E R +IL+N+ E+ N E L ++A Sbjct: 264 DNLEERLVTRFKWGLTSEITPPDFETRIAILRNKC-----ENLPYNFTNETLSYLAGQFD 318 Query: 366 TSGRELDGAFNQLVFRHSFAPI-----LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVA 419 ++ R+L+GA + H A + ++ E+A E + T + + IE IQ V Sbjct: 319 SNVRDLEGALKDI---HLIATMRQLSEISVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVG 375 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 Y +S +L ++RV+ +V RQVAM+L++ MT S P+IG+ FG+RDHTTV+HA K+ Sbjct: 376 NFYGVSLKELKGSKRVQHIVHARQVAMFLAREMTDNSLPKIGKEFGNRDHTTVMHAYNKI 435 Query: 480 EKMLETDITLKKEVELLK 497 + +L D L+ E+ +K Sbjct: 436 KTLLLDDENLEIEITSIK 453 >gi|167560990|ref|ZP_02353906.1| chromosomal replication initiation protein [Burkholderia oklahomensis EO147] Length = 387 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 199/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 50 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 104 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 105 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 164 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 165 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 224 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 225 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 279 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 280 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 338 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 339 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 385 >gi|81251076|gb|ABB69878.1| DNA replication initiator protein [Nitrosospira sp. TYM9] Length = 475 Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 142/462 (30%), Positives = 240/462 (51%), Gaps = 36/462 (7%) Query: 55 YASWFQRLKF---HSVLHNIVHLSVPTNFLKAWIKNRYLETITKL----------FQEEH 101 + +W + L+ H+ + + P F+ W+K+ +L I ++ FQ + Sbjct: 24 FNTWIKPLRLEVSHNTHESTAVVIAPNRFVMQWVKDNFLSRIEQMAGLHFPQAIRFQLKL 83 Query: 102 SRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + V+ VR+V LPS T SS S P+ + + K+ +P S Sbjct: 84 ADPISVKTTVRAVENTDATLPSA--TPSSNSAAFGVPVVSVQKFAMDAREKRDKNP---S 138 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F+ F+ G +N++A A +AE Y NP FI+ VGLGKTHL+QAI Sbjct: 139 RLNPSFTFNNFVTGKANQLARAGAIQVAERPGTAY-----NPFFIYGGVGLGKTHLIQAI 193 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N ++ +V Y +E ++ A + + K ++D+LLIDD+QF GK Sbjct: 194 GNFVLEHNSTAKVRYTHSEQYVSGVVRAYQHKAFDDFKRYYHSLDVLLIDDIQFFGGKNR 253 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF + N+L+++ +QV+ D P E+ ++ R+ SR G++V + + EMR +I Sbjct: 254 TQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWGLTVAVEPPELEMRVAI 313 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + + ++E V +A+ + ++ REL+GA +++ F L+ ++A Sbjct: 314 LLKKALMEN-----IVLDENVAFFIAKHIRSNVRELEGALKRVLAYSRFTGHSLSLDLAR 368 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + +++ IE+IQ+ VA +Y I ++ S +R R V RPRQ+AM +SK +TP Sbjct: 369 EALKDLLAV-QNRQISIENIQKTVADYYKIKVAEMYSKKRSRIVARPRQMAMAISKELTP 427 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 428 LSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAINRDFNAL 469 >gi|162448270|ref|YP_001610637.1| chromosomal replication initiator protein DnaA [Sorangium cellulosum 'So ce 56'] gi|161158852|emb|CAN90157.1| chromosomal replication initiator protein DnaA [Sorangium cellulosum 'So ce 56'] Length = 471 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 242/465 (52%), Gaps = 28/465 (6%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE-EHSRIQGVE 108 + P + WF ++F + ++ L V F+ W+++ +L +T +E +Q Sbjct: 22 LSPATFDQWFGGVQFDDLTDGVLTLRVQNEFVLEWVRDNFLPALTDKIRELTGWSVQVAW 81 Query: 109 ILVRSVALP---SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 + +++ P VE T P + P + + +P P L+ + F+ Sbjct: 82 TVDQNLDAPIAQRVELTPVRPRALVVRPTSAAPAPAPRPEPALRRVPSMPDDLNPKHTFA 141 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G SN++A AA + A Y NPLFI GLGKTHL+ AIA+ + +P Sbjct: 142 SFVVGPSNQLAHAAAIAAAGGGGRRY-----NPLFICGGTGLGKTHLMHAIAHRVFEGRP 196 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGK-LIQHEFCHL 283 + R++Y++AE F F +AI+ + + R+ D+LL+DD+QFL G+ Q EF H Sbjct: 197 DARIIYVSAEKFTNDFITAIQHHRMDEFRTRYRSSCDVLLVDDIQFLAGREQTQEEFFHT 256 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L +Q+V +D+ P LE ++ R+ SR G+ + + + E R +I++N+ A+ Sbjct: 257 FNALHTLDRQIVVTSDKYPQNLERMEERLVSRFSWGLVADIQVPELETRVAIVRNKAALE 316 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA------PILTAEIADELL 397 + + ++V +++A+ V ++ REL+G +L + S P AEI Sbjct: 317 -----GIALTDDVALYLAQMVRSNVRELEGTLIRLAAKSSLTGRPVDLPFARAEIT---- 367 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + + M +EDIQR V H+++ DL S R ++V R VAMYL K SF Sbjct: 368 --ATSPPRAQMMSVEDIQRAVCHHFHLRSIDLTSKDRHKSVAFARHVAMYLCKQRLKCSF 425 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIGR FG+RDHTTV+ AVRK+E ++D ++ +E L++ +++ Sbjct: 426 PEIGRAFGNRDHTTVMSAVRKIEAQRDSDPQVRAHLEALEKKLAD 470 >gi|167568254|ref|ZP_02361128.1| chromosomal replication initiation protein [Burkholderia oklahomensis C6786] Length = 390 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 199/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 53 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 107 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 108 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 167 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 168 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 227 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 228 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 282 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 283 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 341 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 342 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 388 >gi|225164453|ref|ZP_03726710.1| chromosomal replication initiator protein DnaA [Opitutaceae bacterium TAV2] gi|224800923|gb|EEG19262.1| chromosomal replication initiator protein DnaA [Opitutaceae bacterium TAV2] Length = 354 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/352 (35%), Positives = 199/352 (56%), Gaps = 20/352 (5%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R F TF+ G++N++A AA ++A+ + Y NPLFI+ GLGKTHL+ A Sbjct: 16 GALNPRNTFKTFVIGANNQMAHAAATAVAQAPAQAY-----NPLFIYGETGLGKTHLMHA 70 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + + +P RV YL+ E F F A+++N + + R++D+LL+DD+QFL GK Sbjct: 71 IGHTILLNRPEARVAYLSTEKFTNEFIQALQENSLVKFRQRYRSVDVLLLDDVQFLAGKE 130 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 IQ EF H N L +S KQ+V ++DR SE++ L+ R+ SR + G+ + DYE R + Sbjct: 131 RIQEEFFHTFNELFESQKQIVLSSDRRASEIQKLEARLVSRFEWGLPADIQAPDYETRLA 190 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL+ + A K ++ +V + +A+ + + R L+GA ++ S LT D Sbjct: 191 ILRTKAAT-----LKFDLPHDVGVFIAQNIAKNIRRLEGALLKVASYGS----LTGRAVD 241 Query: 395 -----ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 LL ++ + IE IQ+ V +H+ + D+ S RR + PRQ+AM+L Sbjct: 242 IATVENLLKDVLIEQAQNALTIELIQKKVTEHFQLRPGDMTSKRRPNNIAIPRQIAMWLC 301 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S +IG FG RDH TV+HA + VE MLE D+ ++ ++E LK +S Sbjct: 302 RQLTRHSLQDIGDAFGGRDHGTVIHAGKAVENMLEQDVQMRSQIEFLKTQLS 353 >gi|167957122|ref|ZP_02544196.1| chromosomal replication initiation protein [candidate division TM7 single-cell isolate TM7c] Length = 467 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/453 (29%), Positives = 242/453 (53%), Gaps = 23/453 (5%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 V + +W + + + V ++ +F ++ RY I + ++ + Q V Sbjct: 28 VSHGTFEAWLKPTELIDTNESNVRIAARNSFAVRQLETRYDRLIRQALEKNGIKAQKVTY 87 Query: 110 LVRSVALPSVEKTASSPSITKLSPINTNISK--SPI-ILGKQTISPVFGSPLDSRFVFST 166 ++ S +KT + IT+ +PI+ + + +P IL + L+ R+ F Sbjct: 88 EIKR----SGKKTVINREITRQAPISERVQQLTAPQNILSRSNQDKKIS--LNPRYTFDN 141 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 FI GSSN +A Q++A Y NPLF++ VGLGKTHL+QA N IK P Sbjct: 142 FIVGSSNDLAYATCQAVASHPGEKY-----NPLFLYGGVGLGKTHLMQATGNEIIKNNPQ 196 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +++Y T E F+ F IR RN+D+L++DDMQF+ GK Q EF H N Sbjct: 197 AQILYTTTENFIKDFLDHIRFK-KQGFSSKYRNVDVLIVDDMQFIAGKEKTQEEFFHTFN 255 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L + KQ++ ++D+PP + +L R+RSR + G+++ + + D+E R +I++ + ++S Sbjct: 256 ELHQNNKQIIISSDKPPKSIPTLTDRLRSRFEWGMTIDIQMPDFETRCAIVEAKASLSGV 315 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-TAEIADELLSHLVNTG 404 E ++ E ++A+ + T+ REL+G+ NQL+ I ++A+ L+ ++ T Sbjct: 316 E-----LSRETAEYLAQNIKTNIRELEGSLNQLLALAEMRGIEPDIQVAEGLIGNIRQT- 369 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 + + + I A+++ + +++ S++R + + PRQ+AMYL + SFP+I Sbjct: 370 RPRHITAKQIIDKTARYFQLQTSEVCSSKRDKHIALPRQIAMYLLRSELHLSFPKIAAEL 429 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 G +DHTT +H++ K+E+ ++ D T++++V +K Sbjct: 430 GRKDHTTAIHSINKIERAIKLDFTIREQVNEIK 462 >gi|170694069|ref|ZP_02885225.1| chromosomal replication initiator protein DnaA [Burkholderia graminis C4D1M] gi|170141141|gb|EDT09313.1| chromosomal replication initiator protein DnaA [Burkholderia graminis C4D1M] Length = 542 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 199/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 205 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 259 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 260 IGNQLLMDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 319 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 320 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 379 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + +++NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 380 IL-----MRKAQSEFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 434 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 435 KEALKDLL-TVQNRQISVENIQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELT 493 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 494 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 540 >gi|330831850|ref|YP_004400675.1| chromosomal replication initiator protein [Streptococcus suis ST3] gi|329306073|gb|AEB80489.1| chromosomal replication initiator protein [Streptococcus suis ST3] Length = 457 Score = 212 bits (540), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 209/378 (55%), Gaps = 28/378 (7%) Query: 135 NTNISKSPIILGKQTISPV--------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 NT ++S I+ QT+ P S + S++ F+ F++G +N A AA ++++ Sbjct: 89 NTTNTRSSIVHQVQTLEPATPQETFKPVHSGIKSQYTFANFVQGDNNHWAKAAALAVSDN 148 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLFI GLGKTH+L AI N + P R+ Y+++E F+ F +R Sbjct: 149 LGELY-----NPLFIFGGPGLGKTHILNAIGNKFLADNPQARIKYVSSETFINEFLEHLR 203 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 N + K + RN+DLLLIDD+Q L+ K Q EF H N+L + KQ+V +DR P L Sbjct: 204 LNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHL 263 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ++L+ R+ +R + G++ + D+E R +IL+N+ E+ N E L ++A Sbjct: 264 DNLEERLVTRFKWGLTSEITPPDFETRIAILRNKC-----ENLPYNFTNETLSYLAGQFD 318 Query: 366 TSGRELDGAFNQLVFRHSFAPI-----LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVA 419 ++ R+L+GA + H A + ++ E+A E + T + + IE IQ V Sbjct: 319 SNVRDLEGALKDI---HLIATMRQLSEISVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVG 375 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 Y +S +L ++RV+ +V RQVAM+L++ MT S P+IG+ FG+RDHTTV+HA K+ Sbjct: 376 NFYGVSLKELKGSKRVQHIVHARQVAMFLAREMTDNSLPKIGKEFGNRDHTTVMHAYNKI 435 Query: 480 EKMLETDITLKKEVELLK 497 + +L D L+ E+ +K Sbjct: 436 KTLLLDDENLEIEITSIK 453 >gi|317969547|ref|ZP_07970937.1| chromosomal replication initiation protein [Synechococcus sp. CB0205] Length = 468 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 141/473 (29%), Positives = 245/473 (51%), Gaps = 28/473 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ V L+ + + +W + + N + L P F W++ YL TI Sbjct: 7 ETLWRQVQEALQGNLSKPTFETWIRPATCVDLQGNELQLLAPNTFACGWLRKNYLSTIAA 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + E I G I +V++ + ++A ++ P + +P Q + Sbjct: 67 VASE----IAGRPI---AVSVEAGGESAQGITLNGQPPTTAGVEVAPGSAAPQQRTATGE 119 Query: 156 SP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +P L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI VGLGK Sbjct: 120 APRKLAPGLNPRYVFNRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGGVGLGK 174 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+Q Sbjct: 175 THLMQAIGHYRLEIDPEARVAYVSTETFTNDLIQAIRKDGMQKFRDRYRAADLILVDDIQ 234 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D Sbjct: 235 FIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQTPD 294 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL + E ++++ +++ ++A T++ REL+GA + V +FA I Sbjct: 295 LETRMAILHKK-----AEHERVSLPRDLIQYLAGRFTSNIRELEGALTRAV---AFASIT 346 Query: 389 TAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E ++ ++ G ++ + + VA+ + + +++ S R R V + RQV MY Sbjct: 347 GLPMTVESVAPMLEPAGVEVEVTPDQVLNKVAEVFGVGVDEMKSASRKRAVSQARQVGMY 406 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L + T S P IG FG +DH+TV++AV + EK LE D L ++++ ++ L+ Sbjct: 407 LMRQGTNLSLPRIGDAFGGKDHSTVMYAVDQTEKKLEADPQLGRQIQQVRDLL 459 >gi|309791068|ref|ZP_07685604.1| chromosomal replication initiator protein DnaA [Oscillochloris trichoides DG6] gi|308226923|gb|EFO80615.1| chromosomal replication initiator protein DnaA [Oscillochloris trichoides DG6] Length = 462 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 138/464 (29%), Positives = 238/464 (51%), Gaps = 17/464 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N I+ ++ Q Y +W + ++ + + + F K ++NR++ Sbjct: 1 MNLTQIWQAALGAIQLQTSRQDYETWLRGTTLLALDGGLATVGTTSTFHKEGLENRFMAP 60 Query: 93 ITKLFQEEHSRIQGVEILVRSV-ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + + G + VR V A + + + + +L+ + S + S Sbjct: 61 VRRSLGD----VVGYPVQVRVVIANGTANRIENYGPLLELASNSEESESSDRAVQLDLSS 116 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ ++ FS FI GSSNR+A A ++A+ Y NPLF++ VGLGKTH Sbjct: 117 AMRTGMLNPKYTFSRFIVGSSNRLAHAACLAVADNPGQHY-----NPLFLYGGVGLGKTH 171 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + R P + V+Y+++E F +AIR + RNID+LL+DD+QF+ Sbjct: 172 LLHAIGNYVLDRDPEINVLYVSSEKFTNDMINAIRRQQTEEFRMRYRNIDVLLVDDIQFI 231 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L +AK +V ++D+PP + +L+ R+RSR + G+ + D E Sbjct: 232 AGKEGTQEEFFHTFNTLHSAAKHIVISSDKPPKAIPTLEERLRSRFEWGLIADIQPPDLE 291 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILT 389 R +IL+ ++ E + I EV+ +A V ++ REL+G+ N++ F + Sbjct: 292 TRTAILR-----TKGEQMNVEIPNEVIDFLAHKVQSNIRELEGSLNRVAAFAEQHGLPIN 346 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A L+ L+ + +++ + + V++H+ + L R R +V PRQVAMYL Sbjct: 347 VEVATSALADLLGSARRRRITPDQVILAVSEHFGVDLRILQGRGRSRNIVVPRQVAMYLL 406 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + T S +IG+ G RDHTTV++ K+ + + TD L+ EV Sbjct: 407 REETECSLVDIGKLLGGRDHTTVMYGCDKISEEINTDNRLRNEV 450 >gi|255016564|ref|ZP_05288690.1| chromosomal replication initiation protein [Bacteroides sp. 2_1_7] gi|256842198|ref|ZP_05547702.1| chromosomal replication initiator protein DnaA [Parabacteroides sp. D13] gi|256736082|gb|EEU49412.1| chromosomal replication initiator protein DnaA [Parabacteroides sp. D13] Length = 471 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 141/483 (29%), Positives = 257/483 (53%), Gaps = 25/483 (5%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 +K ++ + ++++ + +K+ V + +WF + S + VP+ F +++ Sbjct: 3 EKENMQTDYQTLWNKCLAVIKDIVPKAAFDTWFVPIVPLSYEDKKFTIQVPSQFFYEYLE 62 Query: 87 NRYLETITKLFQE--EHSRIQGVEILVRSVALPSVEKTA--SSPSITKLSPINTNISKSP 142 +Y+ + I I+V +V+ A +S ++ K++P + N + +P Sbjct: 63 EKYVNVLKVTLYRVIGQGTILNYRIMVDKTTGGTVDYPAENASTAVKKVTPKDANKAPNP 122 Query: 143 IILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + T +P P L+ ++ F + EG+SN++ TA +++A+ + G TT NPLFI Sbjct: 123 FM----TTAPQDLDPQLNPKYNFDNYFEGTSNKLVRTAGEAVAQ--NPGKTT--FNPLFI 174 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 G+GKTHL AI + P +V+Y+++ F +F AIR N + + +NID Sbjct: 175 FGPSGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLNFYQNID 234 Query: 262 LLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LL+DD+Q L G Q+ F H+ N L KQ++ +D+PP +L+ ++ R+ +RL+ G+ Sbjct: 235 VLLLDDIQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERLITRLKWGL 294 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + L D ++R ILKN++ + I +EV +A VT + R+L+G LV Sbjct: 295 TAELSRPDLDLRKKILKNKI-----NHDGIMIPDEVFNFIANNVTENVRDLEGI---LVS 346 Query: 381 RHSFAPILTAEIADELLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + A I EI L +V+ E K++ ++ IQ +V K++N+ ++ + +N R R Sbjct: 347 LMANAVINNREIDLPLTKRVVSQAVRLEKKQISVQMIQEIVCKYFNLEQSVIQTNSRKRE 406 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+ MYL+K T SF IG+ G +DH TVLHA + ++ +ET + + VE ++ Sbjct: 407 IVQARQITMYLAKKYTDSSFSHIGKIVGKKDHATVLHACKTIKDQIETSKSFRSSVEEIE 466 Query: 498 RLI 500 L+ Sbjct: 467 VLL 469 >gi|300309347|ref|YP_003773439.1| chromosomal replication initiator protein [Herbaspirillum seropedicae SmR1] gi|300072132|gb|ADJ61531.1| chromosomal replication initiator protein [Herbaspirillum seropedicae SmR1] Length = 465 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/457 (29%), Positives = 235/457 (51%), Gaps = 29/457 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S +L+ ++ P Y++W + L ++ ++ P F W+K ++ IT Sbjct: 2 ENFWQACSQKLEQELTPQQYSAWIKPLVPLDYEDGLLRVAAPNRFKLDWVKTQFANRITA 61 Query: 96 LFQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 L E V+ ++ P+ A + + P + + P + Sbjct: 62 LACEYWDAPTEVQFVLDPRGNQGRRPAAAAAAGNGASGLGLPNHEQLHLDP-----EPAQ 116 Query: 152 PVFG-------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 PV S ++ F + G +N++A AA +A Y NPLF++ Sbjct: 117 PVRAVAPRQEQSRINPVLTFDNLVTGKANQLARAAATQVANNPGTSY-----NPLFLYGG 171 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTH++ AI N + P ++ Y+ AE ++ +A + + K ++DLLL Sbjct: 172 VGLGKTHIIHAIGNQVLVDNPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLL 231 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF GK Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V Sbjct: 232 IDDIQFFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLTVA 291 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + EMR +IL + + ED + ++++V VA+ + ++ REL+GA +++ Sbjct: 292 IEPPELEMRVAILMKK---ASAED--VVLSDDVAFFVAKHLRSNVRELEGALRKILAYSR 346 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T ++ E L L++ + +++ +E+IQ+ VA +NI D+ S +R + RPR Sbjct: 347 FHGKDITIDVVKEALKDLLSV-QNRQISVENIQKTVADFFNIKVADMYSKKRPANIARPR 405 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 Q+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 406 QIAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI 442 >gi|300702375|ref|YP_003743975.1| chromosomal replication initiator protein DnaA [Ralstonia solanacearum CFBP2957] gi|299070036|emb|CBJ41321.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum CFBP2957] Length = 525 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 132/380 (34%), Positives = 207/380 (54%), Gaps = 20/380 (5%) Query: 123 ASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 AS+PS +S +S P T+ S L+ F + G +N++A AA Sbjct: 162 ASAPSAAMMS-----LSAPPAAPVDDTVHE--RSRLNPILTFDNLVTGKANQLARAAAVQ 214 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A Y NPL+++ VGLGKTHL+ AI N + P R+ Y+ AE ++ Sbjct: 215 VANNPGKSY-----NPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIRYIHAEQYVSDVV 269 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 270 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTY 329 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + +Q E+ + + EEV VA Sbjct: 330 PKEITGIDDRLISRFDSGLTVAIEPPELEMRVAILMKK---AQAEN--VTVPEEVAFFVA 384 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ +F +T E+ E L L+ T + +++ +E+IQ+ A Sbjct: 385 KHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDLL-TVQNRQISVENIQKTCAD 443 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 444 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 503 Query: 481 KMLETDITLKKEVELLKRLI 500 D L E+ +L++ + Sbjct: 504 DERSKDAQLNHELHVLEQTL 523 >gi|153815423|ref|ZP_01968091.1| hypothetical protein RUMTOR_01658 [Ruminococcus torques ATCC 27756] gi|317500885|ref|ZP_07959097.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089213|ref|ZP_08338115.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 3_1_46FAA] gi|145847282|gb|EDK24200.1| hypothetical protein RUMTOR_01658 [Ruminococcus torques ATCC 27756] gi|316897765|gb|EFV19824.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 8_1_57FAA] gi|330405765|gb|EGG85294.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 3_1_46FAA] Length = 456 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 136/455 (29%), Positives = 234/455 (51%), Gaps = 34/455 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +W L + V N V++ V I+ +YL E + G+E V V Sbjct: 26 YTTWIAPLTVYEVKDNTVYILVQLRASLEHIEEKYLLPFKVCIAE----VTGIEFEVAFV 81 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 +I K + +N I K ++P ++ F TF+ GS+N Sbjct: 82 TDNEAVIQEKKENIIKKNRVNA-------IYEKANLNP--------KYTFDTFVVGSNNN 126 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE Y NPLFI+ VGLGKTHL+ ++A+ + P+ +V+Y+T+ Sbjct: 127 FAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSVAHFILANDPSKKVLYVTS 181 Query: 235 EYFMWRFASAIRDN------CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 E F A++ ++ RN D+LLIDD+QF+ GK Q EF H N L Sbjct: 182 ETFTNELIDALKAGKTGSELAMTKFREKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNHL 241 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 S KQ++ ++D+PP ++E+L+ R+R+R + G+ + DYE R +IL+ + + E Sbjct: 242 HVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISSPDYETRMAILRKKEELDGLE- 300 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGET 406 K +I ++V+ ++A + ++ REL+G+ N+L+ + + +A E L +++ Sbjct: 301 -KYHIPDDVMQYIANNIKSNIRELEGSLNKLIALSNLENKKIDIPLAAEALKDMISPDNN 359 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 +++ E I +V++H+NI ++L +R +V PRQ+ MYL + +T IG G Sbjct: 360 REVTPELIIDIVSEHFNIPISELKGKKRNAEIVLPRQIIMYLCRTLTDTPLKAIGAILGG 419 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +DH +V H V+K+E L+TD L V ++K+ I+ Sbjct: 420 KDHASVNHGVKKIENELKTDEALNNTVNIIKKKIN 454 >gi|300689715|ref|YP_003750710.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum PSI07] gi|299076775|emb|CBJ49382.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum PSI07] Length = 525 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/367 (34%), Positives = 202/367 (55%), Gaps = 15/367 (4%) Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 T +S P+ T+ S L+ F + G +N++A AA +A Y Sbjct: 170 TGLSAPPVAPVDDTVHE--RSRLNPILTFDNLVTGKANQLARAAAVQVANNPGKSY---- 223 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL+++ VGLGKTHL+ AI N + P R+ Y+ AE ++ A + + K Sbjct: 224 -NPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKR 282 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ +D R+ S Sbjct: 283 YYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLIS 342 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + + EMR +IL + +Q E+ + + EEV VA+ + ++ REL+GA Sbjct: 343 RFDSGLTVAIEPPELEMRVAILMKK---AQAEN--VTVPEEVAFFVAKHLRSNVRELEGA 397 Query: 375 FNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 +++ +F +T E+ E L L+ T + +++ +E+IQ+ A YNI D+ S + Sbjct: 398 LRKILAYSNFHGKEITIEVTREALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKK 456 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ Sbjct: 457 RPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHEL 516 Query: 494 ELLKRLI 500 +L++ + Sbjct: 517 HVLEQTL 523 >gi|187250425|ref|YP_001874907.1| DNA replication initiation ATPase [Elusimicrobium minutum Pei191] gi|226735810|sp|B2KAM4|DNAA_ELUMP RecName: Full=Chromosomal replication initiator protein DnaA gi|186970585|gb|ACC97570.1| ATPase involved in DNA replication initiation [Elusimicrobium minutum Pei191] Length = 452 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 244/461 (52%), Gaps = 47/461 (10%) Query: 41 IVSSRLKNQV--------GPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 I++ LKN++ G + +W + L S+ ++I+ +++P F I ++Y++ Sbjct: 4 IINEDLKNRILKEMETVFGVEACETWLKPLSL-SLKNDILTVTLPNKFWSKTIADKYVQE 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++E QG +I ++ L P I P ++G + Sbjct: 63 VKSSIEKE----QGGDIQIKYDVLEDT-TPYKRPEI------------PPQVMGANYNAK 105 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + F S L+ + F FIEG SNR A AA+++ + NPL I+++ GLGKTH Sbjct: 106 IPFPSRLNPNYTFEGFIEGPSNRFAYRAAEAVVKKLGEREN----NPLVIYSTPGLGKTH 161 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P +++Y++ E F+ + ++++ + R++D L+DD+QF+ Sbjct: 162 LLHAIGNRILKENPYAKILYMSGEEFVSEYIESLQNRNPEAFRKKHRSLDCFLMDDIQFV 221 Query: 272 QGKLIQ-HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK EF + N+L +S KQ+V +DR P +L +DPR+ SRL G+ + D E Sbjct: 222 AGKESSVQEFFYTFNALFESKKQIVLTSDRTPQQL-GIDPRLSSRLLSGIVSEIKRPDLE 280 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR---HSFAPI 387 R +IL+ + ++ ++ ++V+ +A V S REL+G +L H P Sbjct: 281 TRIAILRQK-----RDTSNFDVGDDVIAFIAEGVQASIRELEGCLFRLTTYCNIHGVTP- 334 Query: 388 LTAEIADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 T IA E+LS +++ E K++ I I+++V+KH+ I D S R+ ++ PRQ+A Sbjct: 335 -TIPIAREVLSDIISM-EEKRLLINPNSIKKVVSKHFKIDIIDFNSKRKNHSIAWPRQIA 392 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 MYL+ +T S PEIGR F +RDH+TV+HA K+++ +E D Sbjct: 393 MYLATELTDMSLPEIGREF-ERDHSTVVHAREKIKEEIEND 432 >gi|83749733|ref|ZP_00946710.1| DnaA [Ralstonia solanacearum UW551] gi|207741915|ref|YP_002258307.1| chromosomal replication initiator protein dnaa [Ralstonia solanacearum IPO1609] gi|83723585|gb|EAP70786.1| DnaA [Ralstonia solanacearum UW551] gi|206593301|emb|CAQ60228.1| chromosomal replication initiator protein dnaa [Ralstonia solanacearum IPO1609] Length = 531 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 195/347 (56%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F + G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 194 SRLNPILTFDNLVTGKANQLARAAAVQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 248 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 249 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 308 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 309 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 368 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E+ + + EEV VA+ + ++ REL+GA +++ +F +T E+ Sbjct: 369 ILMKK---AQAEN--VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVT 423 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 424 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 482 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 483 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 529 >gi|307728077|ref|YP_003905301.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1003] gi|307582612|gb|ADN56010.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1003] Length = 537 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 199/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 200 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 254 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 255 IGNQLLMDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 314 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 315 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 374 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + +++NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 375 IL-----MRKAQSEFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 429 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 430 KEALKDLL-TVQNRQISVENIQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELT 488 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 489 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 535 >gi|207727478|ref|YP_002255872.1| chromosomal replication initiator DnaA [Ralstonia solanacearum MolK2] gi|206590715|emb|CAQ56327.1| chromosomal replication initiator protein dnaa [Ralstonia solanacearum MolK2] Length = 534 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 195/347 (56%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F + G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 197 SRLNPILTFDNLVTGKANQLARAAAVQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 251 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 252 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 311 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 312 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 371 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E+ + + EEV VA+ + ++ REL+GA +++ +F +T E+ Sbjct: 372 ILMKK---AQAEN--VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVT 426 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 427 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 485 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 486 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 532 >gi|313806856|gb|EFS45354.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA2] gi|313811769|gb|EFS49483.1| replication initiator protein DnaA [Propionibacterium acnes HL083PA1] gi|313824524|gb|EFS62238.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA2] gi|313826193|gb|EFS63907.1| replication initiator protein DnaA [Propionibacterium acnes HL063PA1] gi|313829189|gb|EFS66903.1| replication initiator protein DnaA [Propionibacterium acnes HL063PA2] gi|313832303|gb|EFS70017.1| replication initiator protein DnaA [Propionibacterium acnes HL007PA1] gi|313832763|gb|EFS70477.1| replication initiator protein DnaA [Propionibacterium acnes HL056PA1] gi|313839622|gb|EFS77336.1| replication initiator protein DnaA [Propionibacterium acnes HL086PA1] gi|314975198|gb|EFT19293.1| replication initiator protein DnaA [Propionibacterium acnes HL053PA1] gi|314977611|gb|EFT21706.1| replication initiator protein DnaA [Propionibacterium acnes HL045PA1] gi|314990686|gb|EFT34777.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA3] gi|315078993|gb|EFT51005.1| replication initiator protein DnaA [Propionibacterium acnes HL053PA2] gi|315088015|gb|EFT59991.1| replication initiator protein DnaA [Propionibacterium acnes HL072PA1] gi|327332500|gb|EGE74235.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL096PA2] gi|327333673|gb|EGE75390.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL096PA3] gi|327448835|gb|EGE95489.1| replication initiator protein DnaA [Propionibacterium acnes HL043PA1] gi|328759811|gb|EGF73402.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL099PA1] Length = 474 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 197/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 128 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 182 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 183 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 242 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 243 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 302 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 303 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 354 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 355 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 414 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 415 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 454 >gi|209523410|ref|ZP_03271965.1| chromosomal replication initiator protein DnaA [Arthrospira maxima CS-328] gi|209496152|gb|EDZ96452.1| chromosomal replication initiator protein DnaA [Arthrospira maxima CS-328] Length = 453 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 144/476 (30%), Positives = 247/476 (51%), Gaps = 32/476 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ E ++ V RL+ Q+G Y +W + S+ ++ + + F W++ Y Sbjct: 1 MDISLEQLWNRVLERLQLQLGEPTYNTWIKTAIATSLENDCLVIRTANPFACNWLQKHYR 60 Query: 91 ETITKLFQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 E I + Q+ I G +EI + T + + + + +S S + + Sbjct: 61 EIIADVVQD----IMGDRLEICI----------TTGTGELMTTNDHSPRVSSSGLDTPGE 106 Query: 149 TISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +S V P L+S+++FS F+ GS +R+A A+ ++AE + NPLF+ VGL Sbjct: 107 VVSSVHKPPNLNSKYMFSQFVVGSGSRLAHAASLAVAESPGREF-----NPLFLCGGVGL 161 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI + ++ P RV Y++ E F +AIR + + +D R D+LL+DD Sbjct: 162 GKTHLMQAIGHYRLEINPYARVFYVSTEKFTNDLIAAIRRDSMQSFRDHYRAADVLLVDD 221 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK Q EF H N+L ++ KQ+V A+DRPPS++ L R+ SR G+ + Sbjct: 222 IQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPSKISGLQDRLCSRFSMGLVADIQP 281 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ + E + + V+ ++A T++ REL+GA + V ++ Sbjct: 282 PDLETRMAILQKK-----AEYENMRLPPAVIEYIATNYTSNIRELEGALIRAV---AYIS 333 Query: 387 ILTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 I + + E ++ ++ E K + E + + VA + +S DL N R R + RQV Sbjct: 334 ISSLPMNVENIAAVLTPTEPKSESSPEIVIQAVADKFKVSVEDLKGNSRRREISLARQVG 393 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + T S P+IG FG +DHTTV++ K+ K + D L + ++ L I+ Sbjct: 394 MYLMRQHTDLSLPKIGEVFGGKDHTTVMYGCEKIAKRRDRDPELHQILQQLSDRIN 449 >gi|299065055|emb|CBJ36216.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum CMR15] Length = 539 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 195/347 (56%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F + G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 202 SRLNPILTFDNLVTGKANQLARAAAVQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 256 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 257 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 316 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 317 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 376 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E+ + + EEV VA+ + ++ REL+GA +++ +F +T E+ Sbjct: 377 ILMKK---AQAEN--VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVT 431 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 432 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 490 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 491 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 537 >gi|149925376|ref|ZP_01913640.1| chromosomal replication initiation protein [Limnobacter sp. MED105] gi|149825493|gb|EDM84701.1| chromosomal replication initiation protein [Limnobacter sp. MED105] Length = 463 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/419 (32%), Positives = 224/419 (53%), Gaps = 28/419 (6%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS------VALPSVEKTASSPS 127 ++ P F W+ N Y +L E ++ V + VA P +S + Sbjct: 43 MAAPNRFKLDWVLNNYGGRFNELATEFFGCDMAIQWQVAAKQASPLVAPPPAAAKNNSEA 102 Query: 128 ITKLSPINTNISKSPIILGKQTISPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 +T+ +P + + I + V+ S L+ FS F+ G +N++A AA+ +A Sbjct: 103 VTQGAPKVAAVKRDEIA------ATVYERSRLNRDLCFSNFVSGRANQLARAAAEQVASN 156 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLF++ VGLGKTHL+ +I N +++ PN ++ Y+ AE ++ A + Sbjct: 157 PGVSY-----NPLFLYGGVGLGKTHLIHSIGNRLLEQNPNTQIRYIHAEQYVSDVVKAYQ 211 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 K S ++DLLLIDD+QF GK Q EF + L+ + KQ++ +D P ++ Sbjct: 212 KKAFEEFKRSYYSLDLLLIDDIQFFGGKSRTQEEFFYAFEQLIAAKKQIIITSDTYPKDI 271 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 + +D R+ SR G++V + + EMR +IL + + E K+ +E+V VA+ + Sbjct: 272 QGMDDRLISRFNSGLTVAIEPPELEMRVAIL-----LKKAEQQKIMFSEDVAFFVAKHMR 326 Query: 366 TSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 ++ REL+GA +++ SF P+ T ++ E L +++ ++ +E IQ+ VA +Y Sbjct: 327 SNIRELEGALRRIMAFASFHNKPV-TMDLVREALRDMISV-HHGQVSVESIQKTVADYYK 384 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I D+ S RR +V PRQVAMYL+K +T +S+ EIG FG RDHTTVLHAV K+ ++ Sbjct: 385 IKVADMFSKRRQAQIVLPRQVAMYLAKELTEKSYVEIGELFGGRDHTTVLHAVNKISEL 443 >gi|78187985|ref|YP_378323.1| chromosomal replication initiation protein [Chlorobium chlorochromatii CaD3] gi|78170184|gb|ABB27280.1| chromosomal replication initiator protein, DnaA [Chlorobium chlorochromatii CaD3] Length = 492 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/467 (27%), Positives = 245/467 (52%), Gaps = 26/467 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE---EHS 102 +K + P + +WF ++ + + + VP+ F WI+ Y + + ++ + Sbjct: 35 IKESINPLAFKTWFLPIRPLGFVGGELTIEVPSQFFYEWIEENYSLLLKQTLRDVIGSEA 94 Query: 103 RIQGVEILVRSVALP---SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 R+ ++ +S P + + +SP + +P+ + + + F S L+ Sbjct: 95 RLMYSIVMDKSQGQPVTIELPQQTTSPFTYEQAPLKVDRIEEQRHESYERNVSRFESHLN 154 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++++F T I G N +A AA+++++ NPL I+ VGLGKTH++QA+ N+ Sbjct: 155 TKYIFDTLIRGDCNSLAFAAAKAVSQNPGQN----AFNPLVIYGGVGLGKTHMMQAVGNS 210 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 + + RV+Y+++E F F +AI++ R+ID+L+IDD+QF GK Q Sbjct: 211 VRENRLTDRVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRSIDVLIIDDIQFFSGKEKTQE 270 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 E H+ N+L S KQ++ +ADRP +++ ++ R+ SR G+S + DYE R +I+ + Sbjct: 271 EIFHIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGLSADIQPPDYETRKAIILS 330 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-----ILTAEIA 393 +L + + +++ V+ +A VT + REL+G +L+ S T Sbjct: 331 KL-----QHNGVTLDDAVIEFIATNVTENVRELEGCIVKLLAAQSLDNRDIDLAFTKSTL 385 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 +++ H TK++ ++ I++ V+ +++I+ NDL + + + RQ+AMYL+K++T Sbjct: 386 KDIIRHT-----TKQLTLDTIEKGVSSYFSITSNDLKGKSKKKEIAVGRQIAMYLAKMLT 440 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG RDH+TV+HAV + K +E +K +E +K+ I Sbjct: 441 DSSLKTIGLHFGGRDHSTVIHAVSTISKRVEQISEERKRIEEIKKRI 487 >gi|313817643|gb|EFS55357.1| replication initiator protein DnaA [Propionibacterium acnes HL046PA2] gi|314961663|gb|EFT05764.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA2] gi|315081497|gb|EFT53473.1| replication initiator protein DnaA [Propionibacterium acnes HL078PA1] gi|315083080|gb|EFT55056.1| replication initiator protein DnaA [Propionibacterium acnes HL027PA2] gi|315086613|gb|EFT58589.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA3] Length = 428 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 197/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 82 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 136 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 137 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 196 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 197 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 256 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 257 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 308 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 309 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 368 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 369 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 408 >gi|148927276|ref|ZP_01810846.1| chromosomal replication initiator protein DnaA [candidate division TM7 genomosp. GTL1] gi|147887335|gb|EDK72789.1| chromosomal replication initiator protein DnaA [candidate division TM7 genomosp. GTL1] Length = 486 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/448 (30%), Positives = 242/448 (54%), Gaps = 36/448 (8%) Query: 54 VYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV 111 + +WF+ + S I+ + VP F K + ++ + I + + + +E+ Sbjct: 58 TFQAWFKNTELLEQSSDGGII-IGVPNIFAKRQFEVKFDKMINETLAKNN-----IEVAS 111 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 + + + +K A +T+ P ++ +P G ++SP G+ L+ R+ F T+I GS Sbjct: 112 ITYEVSTQKKKAVRDRVTEKLP---TVNATPT--GGHSLSPP-GNSLNPRYTFETYIVGS 165 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 +N +A A Q++A+ Y NP+FI+ VGLGKTHL+QA+ N R++Y Sbjct: 166 NNDLAYAACQAVAKSPGRKY-----NPIFIYGGVGLGKTHLIQAVGNEIAHTDRAARILY 220 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + E F+ F IR D RN+D+L+IDD+QF+ GK Q EF H N L + Sbjct: 221 VNTETFVNEFLEYIRFK-KKGFSDRYRNVDVLIIDDIQFIAGKEKTQEEFFHTFNVLHQA 279 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ ++D+PP + +L R+RSR + G+++ + + D+E R +I++ + + + E P+ Sbjct: 280 NKQIIISSDKPPRSIPTLTERLRSRFEWGMAIDIQIPDFETRSAIIETKASQAGIELPR- 338 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMR 410 E + ++A + T+ REL+GA NQL+ +F + + + L+ G+ ++ R Sbjct: 339 ----ETVEYMASNIKTNIRELEGALNQLL---AFCEMRGVTPDIQTATGLI--GDVRQAR 389 Query: 411 -----IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 + I AKH+ I D+LS +R + +V PRQ+AMYL + SFP+I G Sbjct: 390 PHHLTAKQIIDRTAKHFQIEPKDILSPKRDKHIVVPRQIAMYLLRSELHLSFPKIAIELG 449 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEV 493 +DHTT +H++ K+EK ++ D ++++V Sbjct: 450 RKDHTTAIHSIDKIEKAIKLDYLIREQV 477 >gi|313815417|gb|EFS53131.1| replication initiator protein DnaA [Propionibacterium acnes HL059PA1] gi|314916213|gb|EFS80044.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA4] gi|314921816|gb|EFS85647.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA3] gi|314955285|gb|EFS99690.1| replication initiator protein DnaA [Propionibacterium acnes HL027PA1] gi|314959158|gb|EFT03260.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA1] gi|315102317|gb|EFT74293.1| replication initiator protein DnaA [Propionibacterium acnes HL046PA1] gi|327454252|gb|EGF00907.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA3] gi|327456312|gb|EGF02967.1| replication initiator protein DnaA [Propionibacterium acnes HL083PA2] gi|328756010|gb|EGF69626.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA1] gi|328758853|gb|EGF72469.1| replication initiator protein DnaA [Propionibacterium acnes HL025PA2] Length = 474 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 197/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 128 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 182 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 183 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 242 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 243 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 302 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 303 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 354 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 355 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 414 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 415 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 454 >gi|218437014|ref|YP_002375343.1| chromosomal replication initiation protein [Cyanothece sp. PCC 7424] gi|226735799|sp|B7K7Y7|DNAA_CYAP7 RecName: Full=Chromosomal replication initiator protein DnaA gi|218169742|gb|ACK68475.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7424] Length = 453 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 139/468 (29%), Positives = 243/468 (51%), Gaps = 31/468 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ + ++T V RL++++ + +W K + + + F+ ++ YL Sbjct: 1 MELSPQDLWTQVLERLQSRLPRPAFDTWIGTAKIEQLTPQYLVICAANPFILNHLQKNYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + +E IL S+ + + +I T +S L + Sbjct: 61 QIIADVVEE---------ILGYSIDIQLTSTQGENIAIVG----ETQVSAYYPTLSGEHP 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P+ L+ ++ FS F+ GS+NR+A A ++AE + NPLF+ VGLGKT Sbjct: 108 KPI---KLNPKYTFSRFVVGSNNRLAHAATLAVAESPGREF-----NPLFLCGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA+ ++ P+ +V Y++ E F +AIR + + ++ R D+LL+DD+QF Sbjct: 160 HLMQAIAHYRLQMYPDSKVFYVSTEQFTNDLITAIRQDSLQSFREHYRTADILLVDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP ++ +L+ R+ SR G+ + + D Sbjct: 220 IEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKQIPTLEDRLISRFSMGLIADIQVPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +IL+ + E + + EV+ ++A T++ REL+GA + + S + + + Sbjct: 280 ETRMAILQKK-----AEYENMRLPREVIEYIATHYTSNIRELEGALIRAITYISISGLSM 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E +L+ V GE E I ++A+ Y +S DL N R R + RQ+ MYL Sbjct: 335 TVENLAPVLNPPVERGEVTP---ELILNIIAETYKVSVEDLKGNSRRREISLARQIGMYL 391 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 + T S P IG FG +DHTTV+++ K+ ++ + D+ L + + L Sbjct: 392 MRQHTDLSLPRIGEEFGGKDHTTVMYSYDKINQLQKKDLDLSQTLSQL 439 >gi|50841497|ref|YP_054724.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes KPA171202] gi|289424325|ref|ZP_06426108.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK187] gi|289427361|ref|ZP_06429074.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J165] gi|295129530|ref|YP_003580193.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK137] gi|61212561|sp|Q6ABL5|DNAA_PROAC RecName: Full=Chromosomal replication initiator protein DnaA gi|50839099|gb|AAT81766.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes KPA171202] gi|289155022|gb|EFD03704.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK187] gi|289159291|gb|EFD07482.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J165] gi|291377061|gb|ADE00916.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK137] gi|313771066|gb|EFS37032.1| replication initiator protein DnaA [Propionibacterium acnes HL074PA1] gi|313792568|gb|EFS40654.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA1] gi|313803569|gb|EFS44751.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA2] gi|313814221|gb|EFS51935.1| replication initiator protein DnaA [Propionibacterium acnes HL025PA1] gi|313821532|gb|EFS59246.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA1] gi|314963873|gb|EFT07973.1| replication initiator protein DnaA [Propionibacterium acnes HL082PA1] gi|314969083|gb|EFT13181.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA1] gi|314985203|gb|EFT29295.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA1] gi|314987112|gb|EFT31204.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA2] gi|315097162|gb|EFT69138.1| replication initiator protein DnaA [Propionibacterium acnes HL038PA1] gi|315107498|gb|EFT79474.1| replication initiator protein DnaA [Propionibacterium acnes HL030PA1] gi|315109866|gb|EFT81842.1| replication initiator protein DnaA [Propionibacterium acnes HL030PA2] gi|327444469|gb|EGE91123.1| replication initiator protein DnaA [Propionibacterium acnes HL013PA2] gi|327446723|gb|EGE93377.1| replication initiator protein DnaA [Propionibacterium acnes HL043PA2] gi|328757976|gb|EGF71592.1| replication initiator protein DnaA [Propionibacterium acnes HL020PA1] gi|332674399|gb|AEE71215.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes 266] Length = 500 Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 197/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 154 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 208 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 209 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 268 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 269 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 328 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 329 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 380 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 381 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 440 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 441 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 480 >gi|330718062|ref|ZP_08312662.1| chromosomal replication initiator protein DnaA [Leuconostoc fallax KCTC 3537] Length = 448 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 197/365 (53%), Gaps = 24/365 (6%) Query: 147 KQTI--SPVF--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 KQ I +P F S L+ F F +++ GS N A A+++AE + NP I Sbjct: 94 KQEIPDNPAFRRESDLNEHFTFESWVVGSGNEQATAIARAVAEEPGTNW-----NPYLIF 148 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNI 260 VGLGKTHL+QAI N K P R+ Y T E F F ++R + K R + Sbjct: 149 GGVGLGKTHLMQAIGNEYAKTHPQARIKYATTEDFTNDFTDSLRAGEGATATFKRDYRTV 208 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLLLIDD+QFL GK IQ EF + N+L + +Q+V +D+ P + L R+ +R + G Sbjct: 209 DLLLIDDIQFLSGKDKIQEEFFNTFNALTKTGRQIVMTSDQLPKNIPDLQQRLTTRFEAG 268 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL- 378 +S+ + D R +IL+N+ E LNI +VL +A V + R L+GAF++ Sbjct: 269 ISMDILKPDLPTRVAILQNK-----AETDGLNIPRDVLELIAEKVDNNVRSLEGAFHKFE 323 Query: 379 -VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 R P T E A ++L L N + + +E IQ++VA +Y + +DL S+ R + Sbjct: 324 ATLRFMNKPA-TKETAQQILGDL-NINQGFDITVERIQQIVADYYMQTIDDLKSSSRKKD 381 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V R +AMYL++ +T S P+IGR FG RDH++VLHA K+ + E D +K E+L Sbjct: 382 LVNARHIAMYLTRTLTNESLPDIGRSFGGRDHSSVLHATNKITEKSEADPRMK---EMLD 438 Query: 498 RLISE 502 L E Sbjct: 439 ALTDE 443 >gi|258544743|ref|ZP_05704977.1| ATPase involved in DNA replication initiation [Cardiobacterium hominis ATCC 15826] gi|258520014|gb|EEV88873.1| ATPase involved in DNA replication initiation [Cardiobacterium hominis ATCC 15826] Length = 444 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 208/389 (53%), Gaps = 37/389 (9%) Query: 123 ASSPSI-TKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 A++P + SP N + +P F S L+S + F F+ SN A AA+ Sbjct: 82 AAAPELFASASPAQRNAAPAP-----------FESNLNSDYQFHNFVAAPSNNEAFAAAE 130 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 + S G+ NPL I+ GLGK+HL+ A NA ++R V+Y+ AE ++ F Sbjct: 131 RV----SGGHFFADSNPLLIYGGTGLGKSHLMHAAGNA-LRRNGRTAVMYMNAEQYVNEF 185 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADR 300 +A+ + LR++D LLIDD+QFL GK Q EF H N L+D +Q++ DR Sbjct: 186 LAALAGKTQKAFSNRLRSVDALLIDDVQFLGGKTQSQAEFFHTFNELIDKKRQIIMTCDR 245 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P E+E L+ R++SR G++V + + E RF+ILK S+ ++ + ++V + Sbjct: 246 YPKEIEGLEARLKSRFGAGLTVSIRAPEPETRFAILK-----SKAKEQNFPLPDDVAYFI 300 Query: 361 ARTVTTSGRELDGAFNQLVFR--------HSFAPILTAEIADELLSHLVNTGETKKMRIE 412 A + ++ R+L+GA +++F+ + PI A +AD L + K+ +E Sbjct: 301 AENIESNVRDLEGALKKVIFQCQVLKKNEPATVPIAQAALADLL------QAQKKQTSVE 354 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQR+VA+++ IS +LLS+ R +T V PR +AM L++ +T + F +DHTTV Sbjct: 355 NIQRVVAQYFGISEAELLSSSRKKTFVEPRMIAMALTRDLTDMVLQAVAEAFNRKDHTTV 414 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 HA VE +TD ++E E +K +I+ Sbjct: 415 KHATESVESRKKTDPRFREEYENIKTIIT 443 >gi|238025685|ref|YP_002909916.1| chromosomal replication initiator protein DnaA [Burkholderia glumae BGR1] gi|237874879|gb|ACR27212.1| Chromosomal replication initiator protein DnaA [Burkholderia glumae BGR1] Length = 534 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/347 (36%), Positives = 200/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G V NPLF++ VGLGKTHL+ A Sbjct: 197 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---VSYNPLFLYGGVGLGKTHLIHA 251 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 252 IGNQLLLDKSGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 311 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 312 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 371 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E ++++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 372 ILMRK---AQSEG--VSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 426 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 427 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 485 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 486 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 532 >gi|313765026|gb|EFS36390.1| replication initiator protein DnaA [Propionibacterium acnes HL013PA1] gi|314930919|gb|EFS94750.1| replication initiator protein DnaA [Propionibacterium acnes HL067PA1] gi|315099342|gb|EFT71318.1| replication initiator protein DnaA [Propionibacterium acnes HL059PA2] Length = 500 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 197/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 154 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 208 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 209 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 268 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 269 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 328 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 329 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 380 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 381 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 440 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 441 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 480 >gi|119509172|ref|ZP_01628323.1| chromosomal replication initiation protein [Nodularia spumigena CCY9414] gi|119466338|gb|EAW47224.1| chromosomal replication initiation protein [Nodularia spumigena CCY9414] Length = 459 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 140/471 (29%), Positives = 242/471 (51%), Gaps = 27/471 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ +++++ V RL+ ++ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MEIPIDNLWSQVLERLQLELSRPTFETWIKTAHAERLENNCLVIITPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI + Q+ I G + + E T S + +++ + KQ Sbjct: 61 NTIANVVQD----ILGHTVEIYLTVAQGDEMTNLGESEVTWELPSQSMTAESVPQNKQP- 115 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+S++VFS F+ G++NR+A A+ ++AE + NPLF+ VGLGKT Sbjct: 116 ----PKDLNSKYVFSRFVVGANNRMAHAASLAVAESPGREF-----NPLFLCGGVGLGKT 166 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + + P+ ++ Y++ E F +AIR++ N ++ R D+LL+DD+QF Sbjct: 167 HLMQAIGHYRSQICPDSKIFYVSTEQFTNDLITAIRNDSMQNFREHYRAADVLLVDDIQF 226 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP + L R+ SR G+ + D Sbjct: 227 IEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPHHIPQLQERLCSRFSMGLIADVQTPDL 286 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF-NQLVFRHSFAPIL 388 E R +IL+ + E + + +V+ ++A T + REL+GA L + + + Sbjct: 287 ETRMAILQKK-----AEYENIRLPRDVIEYIASNYTNNIRELEGALIRALAYISIWGLPM 341 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E +L E E I ++ ++ IS DL SN R R + RQ+ MYL Sbjct: 342 TVENITPVLER---QSEKVAATPEVILSVIGDNFAISIEDLKSNSRRREISWARQIGMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + T S P IG FG +DHTTV+++ K+ ++L++D TL V+ L++L Sbjct: 399 MRQHTDLSLPRIGEEFGGKDHTTVIYSCDKIAQLLQSDRTL---VQTLRQL 446 >gi|309807844|ref|ZP_07701776.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 01V1-a] gi|308168946|gb|EFO71032.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 01V1-a] Length = 436 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 238/459 (51%), Gaps = 36/459 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ E + + +K + Y +WF+ K S N +++ +++ + Y E Sbjct: 2 LDLEKFWQFFTDNMKKRYSEVAYNAWFKNTKPLSFDKNSKQMTIS---VESPVSKGYWEK 58 Query: 93 --ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ++L QE ++ +EI+ + K A + + T + P+I Sbjct: 59 NLASQLIQEAYAYTD-MEII-------PIFKIAGDTNSERFVVHKTQKKQEPVIENNHN- 109 Query: 151 SPVFGSPL--DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 F L +S++ F TF++G N++A AA ++A+ Y NPLFI VGLG Sbjct: 110 --EFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLG 162 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD+ Sbjct: 163 KTHLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDI 222 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + Sbjct: 223 QFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPP 282 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ + E L I++ L +VA V T+ REL+GA LV + A I Sbjct: 283 DLETRIAILRKKA-----EADGLGIDDNTLDYVASQVDTNIRELEGA---LVKVQAHATI 334 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PRQ Sbjct: 335 EREDINLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQ 394 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 +AMYLS+ +T S P+IG+ FG +DHTTV+HA K K+ Sbjct: 395 IAMYLSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKNRKI 433 >gi|323524378|ref|YP_004226531.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1001] gi|323381380|gb|ADX53471.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1001] Length = 538 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/347 (35%), Positives = 199/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 201 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 255 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 256 IGNQLLMDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 315 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 316 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 375 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + +++NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 376 IL-----MRKAQSEFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 430 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 431 KEALKDLL-TVQNRQISVENIQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELT 489 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 490 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 536 >gi|315222844|ref|ZP_07864729.1| replication initiator protein DnaA [Streptococcus anginosus F0211] gi|315188080|gb|EFU21810.1| replication initiator protein DnaA [Streptococcus anginosus F0211] Length = 447 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 200/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L +++ F F++G N AL+AA +++E + Y NPLFI+ GLGKTH Sbjct: 103 PPIETGLKAKYTFDNFVQGDGNVWALSAALAVSENLATTY-----NPLFIYGGPGLGKTH 157 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N ++ P+ RV Y+ AE F+ F +R + K + R++DLLLIDD+Q L Sbjct: 158 LLNAIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMESFKRTYRSLDLLLIDDIQSL 217 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+ Sbjct: 218 GGKKVSTQEEFFNTFNALHGDNKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDF 277 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR---HSFAP 386 E R +IL+N++ ED + L ++A ++ R+L+GA N + + Sbjct: 278 ETRIAILRNKI-----EDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMARVKNLKE 332 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 I A+ + + + + + I+ IQ V Y +S ++ +RRV+ +V RQVAM Sbjct: 333 ITIDAAAEAIRARKQDASQILVIPIDKIQTEVGNFYGVSVKEMKGSRRVQNIVLARQVAM 392 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IGR FG +DHTTV+HA K++ MLE D L+ E+E +K I Sbjct: 393 YLARELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMLEMDDNLRLEIENIKNKI 446 >gi|91781385|ref|YP_556591.1| chromosomal replication initiation protein [Burkholderia xenovorans LB400] gi|123359273|sp|Q147F0|DNAA_BURXL RecName: Full=Chromosomal replication initiator protein DnaA gi|91685339|gb|ABE28539.1| chromosomal replication initiator protein DnaA [Burkholderia xenovorans LB400] Length = 544 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 207 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 261 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 262 IGNQLLMDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 321 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 322 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 381 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + +++NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 382 IL-----MRKAQSEFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVT 436 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 437 KEALKDLL-TVQNRQISVENIQKTTADFYSIKVADMYSKKRPANIARPRQIAMYLAKELT 495 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 496 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 542 >gi|327457414|gb|EGF04069.1| replication initiator protein DnaA [Propionibacterium acnes HL092PA1] Length = 500 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 197/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 154 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 208 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 209 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 268 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 269 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 328 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 329 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 380 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 381 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 440 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 441 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 480 >gi|314926333|gb|EFS90164.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA3] Length = 500 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 197/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 154 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 208 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 209 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 268 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 269 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 328 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 329 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 380 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 381 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 440 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 441 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 480 >gi|33591700|ref|NP_879344.1| chromosomal replication initiation protein [Bordetella pertussis Tohama I] gi|33598884|ref|NP_886527.1| chromosomal replication initiation protein [Bordetella parapertussis 12822] gi|61212733|sp|Q7VSE0|DNAA_BORPE RecName: Full=Chromosomal replication initiator protein DnaA gi|61212736|sp|Q7W2K5|DNAA_BORPA RecName: Full=Chromosomal replication initiator protein DnaA gi|33571343|emb|CAE44820.1| chromosomal replication initiator protein [Bordetella pertussis Tohama I] gi|33575014|emb|CAE39680.1| chromosomal replication initiator protein [Bordetella parapertussis] gi|332381119|gb|AEE65966.1| chromosomal replication initiation protein [Bordetella pertussis CS] Length = 469 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 144/456 (31%), Positives = 229/456 (50%), Gaps = 39/456 (8%) Query: 44 SRLKNQVGPDVYASWFQRLK--FHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 SRL+ ++ P ++W + L + ++ ++ P F W++ + I L E + Sbjct: 10 SRLEQELPPQQISAWIRPLVPLAYDEAQAVLRVAAPNRFKLDWVRKNFSHQIEALAAEWY 69 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSP--------------INTNISKSPIILGK 147 R V + LP T+S+P I P + P Sbjct: 70 QRPVQV-----TFELPG---TSSAPRIPMAVPRPVAVSVPAVVAAVQQASEPAPPAPASA 121 Query: 148 QTISPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + V+ S L++ F F+ G +N++A AA +AE Y NPLF++ VG Sbjct: 122 DAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY-----NPLFLYGGVG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI NA + +RV Y+ A+ ++ A + + K ++DLLLID Sbjct: 177 LGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLID 236 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK Q EF + +++ KQ++ +D P EL +D R+ SR G++V + Sbjct: 237 DIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIE 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 + EMR +IL + + E + + EEV +A+ + ++ REL+GA +++ F Sbjct: 297 PPELEMRVAIL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFH 351 Query: 386 P--ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +LT ++ E L L++ ++ +E+IQ+ VA Y I D+ S RR + PRQ Sbjct: 352 GRDVLTVDVCKEALKDLLSVS-NGQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQ 410 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 VAMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 411 VAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI 446 >gi|326797445|ref|YP_004315264.1| Chromosomal replication initiator protein dnaA [Sphingobacterium sp. 21] gi|326548209|gb|ADZ76594.1| Chromosomal replication initiator protein dnaA [Sphingobacterium sp. 21] Length = 476 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/483 (28%), Positives = 249/483 (51%), Gaps = 27/483 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S++ +K+ + + +WF+ + + N++ + VP+ F W++ Y+ Sbjct: 1 MEKTSTSVWNSCLEIIKDNIPAQSFKTWFEPISALRLEGNVLTIQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQE---EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + K ++ E+ R++ I+V + ++ T + PS + P+ L K Sbjct: 61 GLLRKTVKKQLGENGRLE-YNIVVEKSSNKNIPYTTNMPSNGNGAEGKKQSIPVPVALNK 119 Query: 148 QTISPVFGSP----------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 +P F P L+ + F FIEG NR+A +A ++A G T+ N Sbjct: 120 DIKNP-FVIPGLKKLQVDPQLNQNYTFDNFIEGDCNRLARSAGFAVAS--KPGGTS--FN 174 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PL I+ VGLGKTHL QAI N + P+ V+Y++ E F +F ++++N + + Sbjct: 175 PLMIYGGVGLGKTHLAQAIGNEVKRHMPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNFY 234 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 + +D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ SR Sbjct: 235 QAMDVIIMDDVHNFAGKDKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSRF 294 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+S + + D E R +ILK ++ E P EV+ +VA + + REL+GA Sbjct: 295 KWGLSADMQVPDLETRMAILKKKMYADGIELP-----YEVVEYVANNIDNNVRELEGAMV 349 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 L+ + + + +A +L + + K++ I+ IQ++V +++ + + S R Sbjct: 350 SLLAQATLNKKEIDLNLAKSMLKNFIKNSH-KEISIDYIQKLVCEYFEVPVEMVKSKTRK 408 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V+ RQ++MYL+K T S IG FG RDH+TV++A + VE +++TD K V+ Sbjct: 409 REIVQARQISMYLAKNHTKTSLKSIGAYFGGRDHSTVIYACQTVEDLIDTDKKFKAYVQD 468 Query: 496 LKR 498 +++ Sbjct: 469 IQK 471 >gi|314980257|gb|EFT24351.1| replication initiator protein DnaA [Propionibacterium acnes HL072PA2] Length = 500 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/340 (37%), Positives = 197/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 154 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 208 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 209 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 268 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 269 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 328 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 329 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 380 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 381 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 440 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 441 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 480 >gi|296157625|ref|ZP_06840460.1| chromosomal replication initiator protein DnaA [Burkholderia sp. Ch1-1] gi|295892397|gb|EFG72180.1| chromosomal replication initiator protein DnaA [Burkholderia sp. Ch1-1] Length = 537 Score = 211 bits (537), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 200 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 254 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 255 IGNQLLMDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 314 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 315 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 374 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + +++NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 375 IL-----MRKAQSEFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVT 429 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 430 KEALKDLL-TVQNRQISVENIQKTTADFYSIKVADMYSKKRPANIARPRQIAMYLAKELT 488 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 489 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 535 >gi|134294129|ref|YP_001117864.1| chromosomal replication initiation protein [Burkholderia vietnamiensis G4] gi|166201869|sp|A4J9S6|DNAA_BURVG RecName: Full=Chromosomal replication initiator protein DnaA gi|134137286|gb|ABO53029.1| chromosomal replication initiator protein DnaA [Burkholderia vietnamiensis G4] Length = 525 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 125/347 (36%), Positives = 197/347 (56%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A Y NPLF++ VGLGKTHL+ A Sbjct: 188 SKLNPVLTFDNFVTGKANQLARAAAIQVAHNPGISY-----NPLFLYGGVGLGKTHLIHA 242 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 243 IGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 302 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 303 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 362 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + +Q E +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 363 ILMRK---AQSEG--VNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELT 417 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 418 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 476 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 477 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTL 523 >gi|15671983|ref|NP_266157.1| chromosomal replication initiation protein [Lactococcus lactis subsp. lactis Il1403] gi|281490499|ref|YP_003352479.1| chromosomal replication initiator protein DnaA [Lactococcus lactis subsp. lactis KF147] gi|14194668|sp|Q9CJJ2|DNAA_LACLA RecName: Full=Chromosomal replication initiator protein DnaA gi|12722836|gb|AAK04099.1|AE006239_1 replication initiation protein DnaA [Lactococcus lactis subsp. lactis Il1403] gi|281374317|gb|ADA63850.1| Chromosomal replication initiator protein DnaA [Lactococcus lactis subsp. lactis KF147] Length = 455 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 202/348 (58%), Gaps = 15/348 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F F++G NR L AA ++A+ Y NPLFI+ GLGKTHL+ A Sbjct: 116 SGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGDTY-----NPLFIYGGAGLGKTHLMHA 170 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+++E F+ + +A R N N +++ RN+DLLL+DD+QF K Sbjct: 171 IGNQILTDNPTARIKYVSSENFVNDYVNATRKNQMENFENTYRNLDLLLLDDVQFFSDKE 230 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 ++EF + N+L D Q+V +DR P EL +L+ R+ SR G++ + DYE R + Sbjct: 231 GTKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMA 290 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPILTAEI 392 IL + + E +L E L ++A + ++ REL+GA N++ F R + ++ E Sbjct: 291 IL-----LIKSESSRLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGIAVVDIET 345 Query: 393 ADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A + L L N + + I+ IQ VA +Y+IS +DL+ +R + + PRQ+AMYL + Sbjct: 346 ASQALRSLKNATQQSLSNLTIKKIQDEVANYYHISFSDLVGPKRPKEIAFPRQIAMYLVR 405 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + S P IG FG RDHTTV++A +++ ++ D+ ++K+++ +KR Sbjct: 406 ELLGTSLPAIGTAFGGRDHTTVMYAYKQISDKMKNDMDVQKDIDSIKR 453 >gi|172039681|ref|YP_001799395.1| chromosomal replication initiation protein [Corynebacterium urealyticum DSM 7109] gi|171850985|emb|CAQ03961.1| chromosomal replication initiator protein [Corynebacterium urealyticum DSM 7109] Length = 586 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/409 (33%), Positives = 220/409 (53%), Gaps = 31/409 (7%) Query: 98 QEEHSRIQGVEILVR---SVALPSVEKTASSPSITKLSPI---NTNISKSPIILGKQTIS 151 Q+EH+RI E L + V P A P+ SP + S +L K Sbjct: 194 QDEHTRILAAERLAQQHQGVNQPESRNEAFVPAEASSSPTADTDEGDRDSDTLLNK---- 249 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 ++ F +F+ G SN+ A A +++AE + Y NPLFI GLGKTH Sbjct: 250 ---------KYTFESFVIGGSNQFAHAACRAVAEAPARAY-----NPLFIWGESGLGKTH 295 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI + + + QP++RV Y+++E F ++I ++ K RN+D+L++DD+QFL Sbjct: 296 LLHAIGHYAKELQPDMRVRYVSSEELTNDFINSIANDRREEFKREYRNLDMLIVDDIQFL 355 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 QGK Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R +GG+ + D E Sbjct: 356 QGKESTQEEFFHTFNALHQANKQIVLSSDRPPRQLTTLEDRLRTRFEGGLITDVQTPDLE 415 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 R +IL + A + E+VL +A TS REL+GA ++ S Sbjct: 416 TRMAILSRKAAAE-----GTTLPEDVLELIASRYETSIRELEGALIRVTAYCSLGKEPIT 470 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + A E+ + + +M + I +V+ +++++ ++L+ R + V+ RQ+AMYL + Sbjct: 471 KQAAEIALRDIMPVDDVQMTPQVIIDVVSSYFDLTVDELVGKGRTKRFVQARQIAMYLCR 530 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKR 498 +T S P++G+ FG RDHTTV+HA R++ E++ E +T + EL +R Sbjct: 531 ELTDLSLPKLGQAFGGRDHTTVMHAERRIREQLTEDRVTFNEVQELTQR 579 >gi|187922036|ref|YP_001893678.1| chromosomal replication initiation protein [Burkholderia phytofirmans PsJN] gi|226735790|sp|B2SZ75|DNAA_BURPP RecName: Full=Chromosomal replication initiator protein DnaA gi|187713230|gb|ACD14454.1| chromosomal replication initiator protein DnaA [Burkholderia phytofirmans PsJN] Length = 545 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 198/347 (57%), Gaps = 13/347 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A D+ G + NPLF++ VGLGKTHL+ A Sbjct: 208 SKLNPVLTFDNFVTGKANQLARAAAIQVA--DNPG---ISYNPLFLYGGVGLGKTHLIHA 262 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 263 IGNQLLMDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 322 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 323 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 382 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + +++NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 383 IL-----MRKAQSEFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVT 437 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 438 KEALKDLL-TVQNRQISVENIQKTTADFYSIKVADMYSKKRPANIARPRQIAMYLAKELT 496 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 497 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 543 >gi|326405598|gb|ADZ62669.1| chromosomal replication initiator protein [Lactococcus lactis subsp. lactis CV56] Length = 455 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 202/348 (58%), Gaps = 15/348 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F F++G NR L AA ++A+ Y NPLFI+ GLGKTHL+ A Sbjct: 116 SGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGDTY-----NPLFIYGGAGLGKTHLMHA 170 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+++E F+ + +A R N N +++ RN+DLLL+DD+QF K Sbjct: 171 IGNQILTDNPTARIKYVSSENFVNDYVNATRKNQMENFENTYRNLDLLLLDDVQFFSDKE 230 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 ++EF + N+L D Q+V +DR P EL +L+ R+ SR G++ + DYE R + Sbjct: 231 GTKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMA 290 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPILTAEI 392 IL + + E +L E L ++A + ++ REL+GA N++ F R + ++ E Sbjct: 291 IL-----LIKSESSRLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGIAVVDIET 345 Query: 393 ADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A + L L N + + I+ IQ VA +Y+IS +DL+ +R + + PRQ+AMYL + Sbjct: 346 ASQALRSLKNATQQSLSNLTIKKIQDEVANYYHISFSDLVGPKRPKEIAFPRQIAMYLVR 405 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + S P IG FG RDHTTV++A +++ ++ D+ ++K+++ +KR Sbjct: 406 ELLGTSLPAIGTAFGGRDHTTVMYAYKQISDKMKNDMDVQKDIDSIKR 453 >gi|307707899|ref|ZP_07644374.1| chromosomal replication initiator protein DnaA [Streptococcus mitis NCTC 12261] gi|307615964|gb|EFN95162.1| chromosomal replication initiator protein DnaA [Streptococcus mitis NCTC 12261] Length = 453 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 202/354 (57%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMDKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N L ++ KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNVLHNNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E+ + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTENLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQNEVGNFYGVSVKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKI 452 >gi|257455164|ref|ZP_05620402.1| chromosomal replication initiator protein DnaA [Enhydrobacter aerosaccus SK60] gi|257447497|gb|EEV22502.1| chromosomal replication initiator protein DnaA [Enhydrobacter aerosaccus SK60] Length = 446 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 141/465 (30%), Positives = 246/465 (52%), Gaps = 43/465 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LK QV +++ W + L S+ +N + ++VP + ++++ +L I + Q+ + Sbjct: 13 LKYQVPDNIFTMWIRPLS-ASMHNNTMVVNVPNQYFASYVEKNHLSQIQTILQQLEPTL- 70 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP------LD 159 +++ ++ I K + I +SK G+Q ++ V +D Sbjct: 71 PIQVQIQ---------------IDKGNAITDAVSKQE--FGEQKVTLVKTEQQRSFQYID 113 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 F F F+ SN++A SI ++ + NPLFI+ + GLGKTHL+QAIA+ Sbjct: 114 PHFTFDQFVTAKSNQIAY----SICRETANNLGQSKNNPLFIYGATGLGKTHLMQAIAHE 169 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE 279 +K+ + Y T++ F+ + ++R KD ++ DLL+IDD+ + GK E Sbjct: 170 ILKQGKSF--YYFTSDKFVNQLVHSLRTQKIDEFKDKIKKADLLIIDDIHVIAGKQKSSE 227 Query: 280 -FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 F LLN + KQV+ A+D+ PS L D R++SRL GV+V L + E R IL+ Sbjct: 228 QFLLLLNDFMSKNKQVILASDKHPSALTDFDERLKSRLAWGVAVALEPPELETRIQILQK 287 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 + + PK E + +A+ + + REL+GA N+++ + + +L I EL+ Sbjct: 288 KSKAQEVILPK-----ECAIFIAQHIIANVRELEGALNKVL---AISRLLNQPIHLELVQ 339 Query: 399 HLVN---TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 + + + +++I+++VA+ Y+IS DL+ +R+R + RPRQVAM L++ +T Sbjct: 340 MALKDLIAMRVQAVSMDNIRKVVAEFYDISVKDLMGKKRLRHIARPRQVAMSLARELTNN 399 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SF EIG+ FG RDHTTV+HA KV+++ +D+ K+ LK ++ Sbjct: 400 SFTEIGQSFGGRDHTTVMHACEKVQELCVSDLMFDKDYRSLKLML 444 >gi|145218823|ref|YP_001129532.1| chromosomal replication initiator protein DnaA [Prosthecochloris vibrioformis DSM 265] gi|145204987|gb|ABP36030.1| chromosomal replication initiator protein DnaA [Chlorobium phaeovibrioides DSM 265] Length = 487 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 140/489 (28%), Positives = 246/489 (50%), Gaps = 47/489 (9%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 V K CLE ++ + P + +WF +K + + + VP+ F WI Sbjct: 27 VWKSCLEA------------IREHINPLAFQTWFSPIKPLGLSGGELTIEVPSTFFYEWI 74 Query: 86 KNRYLETITKLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPINTNISK--SP 142 + Y + + + +I G E L+ S+ + +K+ + P +L N+ K S Sbjct: 75 EEHYSQFLNTALK----KIIGPEARLMYSIVM---DKSQTEPVTIQLPLQNSQPDKKASE 127 Query: 143 IILGKQTIS-----PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + K + S F + L+S++ F T I G N +A AA+S+A+ N Sbjct: 128 EAVKKSSDSFERDIERFETQLNSKYTFDTLIRGDCNSLAFAAAKSVAQNPGQN----AFN 183 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PL I+ VGLGKTH++QAI N + + +V+Y+++E F F +AI++ Sbjct: 184 PLVIYGGVGLGKTHMMQAIGNTVRQEREGAKVLYVSSEKFAIDFVNAIQNGKIQEFSSFY 243 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R ID+L+IDD+QF GK Q E H+ N+L S KQ++ +ADRP ++ ++ R+ SR Sbjct: 244 RTIDVLIIDDIQFFSGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKNIKGIEDRLISRF 303 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G+S + DYE R +I+ ++L + ++++E V+ +A +T + REL+G Sbjct: 304 NWGLSADIQPPDYETRKAIILSKL-----QQSGVDLDENVIEFIANNITDNVRELEGCIV 358 Query: 377 QLVFRHSFAP-----ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +L+ S T +++ H K++ ++ I++++ + Y I+ NDL Sbjct: 359 KLLAARSLDNRDIDLSFTKLTLKDIIRH-----SAKQLNLDTIEKVICEFYAITSNDLKG 413 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 + + + RQ+AMYL+K +T S IG FG RDH+TV+HAV + + +E + + Sbjct: 414 KSKKKEIATGRQIAMYLAKQLTESSLKTIGLHFGGRDHSTVIHAVNTIARRIEAEGEDQG 473 Query: 492 EVELLKRLI 500 + ++R I Sbjct: 474 RINEIRRRI 482 >gi|297181712|gb|ADI17894.1| ATPase involved in DNA replication initiation [uncultured Chloroflexi bacterium HF0200_06I16] Length = 451 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 138/477 (28%), Positives = 246/477 (51%), Gaps = 38/477 (7%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E ++ V L+ Q+ + +W + + + + + P +F W++ R + Sbjct: 3 ESTAREVWRAVLGDLQLQLPRPTFETWLKPTEGITYDDGVFVVEAPNSFAVEWLERRIYQ 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVA-LPSVEKT----ASSPSITKLSPINTNISKSPIILG 146 ++ K ++ + +++ VRS +VE+T S+ S+T +P Sbjct: 63 SLQKTLRKVTGQELELQLQVRSEGEFYAVEQTDVVLESAGSVTPTTP------------- 109 Query: 147 KQTISPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 P+F + ++ F +F+ G SNR+AL+A+Q+++E Y NPL++H++ Sbjct: 110 -----PLFEIRSFNPKYSFDSFVAGPSNRLALSASQTVSEFPGQSY-----NPLYLHSAS 159 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLLQ+I R L V+Y+T+E F F +AIR+ + + R++ +LL+ Sbjct: 160 GLGKTHLLQSIGKRCASR--GLSVLYVTSEQFTNEFITAIRNRTTEDFRRRYRSVQVLLL 217 Query: 266 DDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL GK HE F H N L +S QVV ++DR P L+S++ R+RSR +GG+ + Sbjct: 218 DDVQFLSGKEQTHEGFFHTFNELHNSGNQVVISSDRAPKALDSIEDRLRSRFEGGLIADI 277 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R SIL N+ + ++N+ V+ +A+ + + REL+G+ N++V Sbjct: 278 QPPDLETRMSILANKAV-----ELRVNLESNVIELIAKRIQRNVRELEGSLNRMVAYSQL 332 Query: 385 API-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +T E ++L+ + + + + + I VA Y +S DL++ R + V RQ Sbjct: 333 MNVNITLESTLQILNEMAPETDARSIDPQHIFEQVAIFYALSVRDLMAKNRTKKVSLARQ 392 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 VAMYL S ++GR G RDH+TV+H K+ + + +++++ +K I Sbjct: 393 VAMYLLIYELELSPTQVGRLLGGRDHSTVIHGAGKINGEVTENGKIRQDILAIKEAI 449 >gi|327334557|gb|EGE76268.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL097PA1] Length = 474 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 197/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 128 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 182 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 183 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 242 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 243 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 302 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 303 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 354 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +++V RQ Sbjct: 355 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISTDDLLGTSRAQSLVTARQ 414 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 415 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 454 >gi|33866070|ref|NP_897629.1| chromosomal replication initiation protein [Synechococcus sp. WH 8102] gi|61212711|sp|Q7U605|DNAA_SYNPX RecName: Full=Chromosomal replication initiator protein DnaA gi|33639045|emb|CAE08051.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8102] Length = 465 Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 145/472 (30%), Positives = 252/472 (53%), Gaps = 21/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E +++ V L+ ++ + ++ + + + L P F ++ + L + Sbjct: 3 LTGEELWSKVREGLQTKLSKPTFETFIRPTACSGFANGELRLLAPNPFAGVRLREQLLPS 62 Query: 93 ITKLFQEE-HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 IT+L E +Q V + +V P V + P +P ++ ++ + S Sbjct: 63 ITQLASEACGGPVQVVVLADSAVVSPGVTNQDADPPEPASAPGDSAAARE----SAPSRS 118 Query: 152 PVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P P L+ R+VF F+ G ++R+A AA ++AE + NPLFI VGLGKT Sbjct: 119 PRRVLPGLNPRYVFGRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGGVGLGKT 173 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P+ RV Y++ E F +IR + +D R DLLL+DD+QF Sbjct: 174 HLMQAIGHYRLEIDPSARVSYVSTETFTNDLIDSIRKDGMKAFRDRYRAADLLLVDDIQF 233 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPPS++ L R+ SR Q G+ + D Sbjct: 234 IEGKEYTQEEFFHTFNALHEAGKQVVIASDRPPSQISRLQQRLISRFQMGLIADIQAPDL 293 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E ++ + +++ ++A T++ REL+GA + V +FA I Sbjct: 294 ETRMAILQKK-----AEQERMALPRDLIHYLAGRFTSNIRELEGALTRAV---AFASITG 345 Query: 390 AEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ +++ TG+ + + + V++ ++++ ++LS+ R R V + RQV MYL Sbjct: 346 LPMTVESVAPMLDPTGQGVDVTPQQVIDKVSEVFDVTAEEMLSSTRRRAVSQARQVGMYL 405 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + T S P IG FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 406 MRQGTDLSLPRIGDTFGGKDHTTVMYAIEQVEKKLASDPQLAGQVQKVKDLL 457 >gi|312193898|ref|YP_004013959.1| chromosomal replication initiator protein DnaA [Frankia sp. EuI1c] gi|311225234|gb|ADP78089.1| chromosomal replication initiator protein DnaA [Frankia sp. EuI1c] Length = 512 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/351 (36%), Positives = 199/351 (56%), Gaps = 19/351 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+VF TF+ G SNR A+ ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 171 LNPRYVFETFVIGDSNRFPHAASVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 225 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + K P+ +V Y++ E F F ++IRD+ + R+ID+LL+DD+QFL+ K Sbjct: 226 HYTKKLYPDAQVKYVSTEEFTNDFINSIRDDRQQAFQRRYRDIDVLLVDDIQFLENKERT 285 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L D+ KQ+V ++DR P +L +L+ R+RSR + G+ + D E R +IL Sbjct: 286 QEEFFHTFNVLHDTEKQLVISSDRSPRQLSALEDRLRSRFEWGLITDVTPPDLETRIAIL 345 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + AI +L + +VL ++A + + REL+GA L+ +FA + + + Sbjct: 346 SKKAAIE-----RLPVPPDVLEYIATHIERNIRELEGA---LIRVAAFASLNKSHVDRTL 397 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ ++ I A ++ +S DL R R +V RQ+AMYL + + Sbjct: 398 AEIVLRDLIPDATNTEITATSIMNATASYFGVSMEDLCGTSRSRVLVTARQIAMYLCREL 457 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRLISE 502 T S P+IG+ FG RDHTTV+HA RK+ ++ + +V EL R+ +E Sbjct: 458 TDLSLPKIGQHFGGRDHTTVMHANRKIRGLMAERRAIYNQVTELTNRIRAE 508 >gi|260221776|emb|CBA30678.1| Chromosomal replication initiator protein dnaA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 486 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 143/469 (30%), Positives = 247/469 (52%), Gaps = 23/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLK--FHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 +S++ +L ++ + +W + L H + I + V F W++ +Y + I Sbjct: 35 QSLWQSCVDQLAQELPEQQFNTWIKPLTALVHEDMSKIT-VFVANRFKLDWVRAQYSQRI 93 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + ++ + + VE+++ P + A +P ++ + +G+ ++ Sbjct: 94 AGMLEKLYGQAVSVELVITPREAPV--RPAMAPRAAEVPAAIEEVE-----VGEDRVAGG 146 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+S F + +EG++NR+A AA +A + H Y NPLFI+ VGLGKTHL+ Sbjct: 147 PKSRLNSMLTFESLVEGTANRMARAAAMHVATMPGHLY-----NPLFIYGGVGLGKTHLM 201 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +P +V+Y+ AE F+ A + K+ ++DLLLIDD+QF Sbjct: 202 HAVGNRLLVDKPGSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFAN 261 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + +LL +V +D P L + R+ SR G++V + + EMR Sbjct: 262 KDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFDSGLTVAIEPPELEMR 321 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL N+ E P EEV VA+ V ++ REL+GA +++ F ++ + Sbjct: 322 VAILINKAHAEGSEMP-----EEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIQ 376 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L L++ + +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K Sbjct: 377 LAREALRDLLSI-QNRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKE 435 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 436 LTQKSLPEIGELFGGRDHTTVLHAVRKIGGERQQLTELNQQLHVLEQTL 484 >gi|72381841|ref|YP_291196.1| chromosomal replication initiation protein [Prochlorococcus marinus str. NATL2A] gi|72001691|gb|AAZ57493.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. NATL2A] Length = 466 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 142/467 (30%), Positives = 248/467 (53%), Gaps = 17/467 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++T V L+ + Y +W + +F + L P +F W++ Y +TI + Sbjct: 7 DELWTKVQQLLQKNLSKPSYETWIRPAEFFDFKDGCLTLIAPNSFSSDWLRKNYSQTIEE 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + E V I V+ + + S + + I T S++ + KQT F Sbjct: 67 IASEIFGHEVKVCIKVKEEFSSNKSNKKKNYSNVEANSIAT--SENYDVKSKQTQIKKFL 124 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI VGLGKTHL+Q+ Sbjct: 125 PSLNLRYVFNRFVVGPNSRMAHAAAMAVAEAPGREF-----NPLFICGGVGLGKTHLMQS 179 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + ++ P +V Y++ E F AIR + ++ R DL+L+DD+QF++GK Sbjct: 180 IGHYRLEIDPGAKVAYVSTETFTNDLIVAIRKDGMQAFRNRYREADLILVDDIQFIEGKE 239 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ +Q+V +DRPPS++ L R+ SR G+ + D E R + Sbjct: 240 YTQEEFFHTFNALHEAGRQIVLTSDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMA 299 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL+ + E ++ + +++ +A T++ REL+GAF + V +FA I + Sbjct: 300 ILQKK-----AEHERMRLPRDLIQFIAGRFTSNIRELEGAFTRAV---AFASITGLPMTV 351 Query: 395 ELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E ++ +++ TG+ +++ + + VA+ + ++ ++ S R R V + RQV MYL + T Sbjct: 352 ESVAPMLDPTGQGVEVKPKQVLEKVAEVFGVTEEEMRSPSRRRPVSQARQVGMYLMRHGT 411 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG +DHTTV++A+ +VEK L ++ L +V+ +K L+ Sbjct: 412 DLSLPRIGESFGGKDHTTVMYAIEQVEKKLSSEPQLASQVQKVKDLL 458 >gi|94967032|ref|YP_589080.1| chromosomal replication initiator protein DnaA [Candidatus Koribacter versatilis Ellin345] gi|94549082|gb|ABF39006.1| chromosomal replication initiator protein DnaA [Candidatus Koribacter versatilis Ellin345] Length = 461 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 116/347 (33%), Positives = 207/347 (59%), Gaps = 22/347 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F F+ G N+ A A++++A+ S Y NPLF++ VG+GKTHL+QAI Sbjct: 126 LNPKYIFDNFVTGPGNQFAHAASRAVADRPSKTY-----NPLFLYGGVGMGKTHLMQAIG 180 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P + Y+++E F +++R + + ++ R +D+LLIDD+QF+ K Sbjct: 181 HTIKRNNPEHSICYVSSEKFTNDMINSVRYDKMTSFRERYRTVDVLLIDDIQFIARKERT 240 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ+V A+DRPP EL ++ R+RSR + G+ + D E + +IL Sbjct: 241 QEEFFHTFNALHEQQKQLVIASDRPPKELAEIEDRLRSRFEWGLIADIQPPDLETKVAIL 300 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + E + + +V + +A + ++ REL+GA +LV +++ + E+ Sbjct: 301 QKK-----AESERTQLPTDVALFIASNIRSNVRELEGALIRLV---AYSSLTGGELNLMT 352 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A ++L ++++ +T+K+ IE IQ+ A+ + + ++ + R +V PRQ+AMYL+K + Sbjct: 353 AQQVLKNIIDQ-QTRKVTIESIQKACAEQFGLRIAEIKAKNNSRAIVYPRQIAMYLAKHL 411 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 T S PEIGR+FG + HTTVLH+V K+++ ++D L + LL +L Sbjct: 412 TEASLPEIGRQFGGKHHTTVLHSVDKIDEARKSDKDLNR---LLNKL 455 >gi|313682853|ref|YP_004060591.1| chromosomal replication initiator protein dnaa [Sulfuricurvum kujiense DSM 16994] gi|313155713|gb|ADR34391.1| chromosomal replication initiator protein DnaA [Sulfuricurvum kujiense DSM 16994] Length = 443 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 135/473 (28%), Positives = 249/473 (52%), Gaps = 46/473 (9%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL---HNIVHLSVPTNFLKAWIKNRYLETI 93 SI ++ L+ +V P + + ++LK++ L H++V P + WI++++ E I Sbjct: 7 SIGELIIEELEKRVNPIDFKRYIKQLKYNEALSKPHSVV-FDTPNALIANWIQSKHAELI 65 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI-NTNISKSPIILGKQTISP 152 LF+ +++ P++ S + S + ++N SK+ I Sbjct: 66 ATLFE------------IKTNIKPAISFRISDDEVLLTSFMESSNASKTATI-------- 105 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 GSPL+ + F FI G SN A AA + + + NPLFIH VGLGKTHL Sbjct: 106 --GSPLNPLYTFDNFIVGGSNEFAYRAA-----IMASKKPGIVYNPLFIHGGVGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ N + + V+Y + E F+ F+ +R K+ R DLLLIDD+QFL Sbjct: 159 MHAVGN--VLKDYGKEVIYTSVENFLNDFSRYLRIGEMEQFKNKYRKCDLLLIDDVQFLS 216 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK+ +Q EF H +L + +Q++ +D+ P +++ ++ R+ SR + G+ + + E Sbjct: 217 GKVKVQEEFFHTFEALKNENRQIIITSDQHPKKIKGIEKRLISRFEWGLVADIQSPELET 276 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 + I+K + I+ +++ + +++ ++A + + RE++G +L ++++ ++ E Sbjct: 277 KLEIIKKKCEIN-----RVSFSNDIIQYIATIIENNTREIEGIITKL---NAYSQLMGIE 328 Query: 392 IADELL-SHLVNTGETKK--MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E S + N E KK + I+ I +VAK N+ ++++ SN R VV R++A+YL Sbjct: 329 VDLEFARSVMKNQIEEKKTEITIDSILELVAKELNVKQSEMRSNNRTVPVVHARRIAIYL 388 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +TP S P++ FG +DHT V H ++K++ M+E D K +++ + IS Sbjct: 389 SRTLTPNSMPQLASYFGLKDHTAVSHTMKKIKDMMENDDDFKLKIDEMINKIS 441 >gi|150006675|ref|YP_001301418.1| chromosomal replication initiation protein [Parabacteroides distasonis ATCC 8503] gi|262384875|ref|ZP_06078007.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_33B] gi|298377645|ref|ZP_06987596.1| ATPase [Bacteroides sp. 3_1_19] gi|301308943|ref|ZP_07214888.1| ATPase involved in DNA replication initiation [Bacteroides sp. 20_3] gi|149935099|gb|ABR41796.1| chromosomal replication initiator protein DnaA [Parabacteroides distasonis ATCC 8503] gi|262293591|gb|EEY81527.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_33B] gi|298265348|gb|EFI07010.1| ATPase [Bacteroides sp. 3_1_19] gi|300832969|gb|EFK63594.1| ATPase involved in DNA replication initiation [Bacteroides sp. 20_3] Length = 465 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 140/479 (29%), Positives = 255/479 (53%), Gaps = 25/479 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++++ + +K+ V + +WF + S + VP+ F +++ +Y+ Sbjct: 1 MQTDYQTLWNKCLAVIKDIVPKAAFDTWFVPIVPLSYEDKKFTIQVPSQFFYEYLEEKYV 60 Query: 91 ETITKLFQE--EHSRIQGVEILVRSVALPSVEKTA--SSPSITKLSPINTNISKSPIILG 146 + I I+V +V+ A +S ++ K++P + N + +P + Sbjct: 61 NVLKVTLYRVIGQGTILNYRIMVDKTTGGTVDYPAENASTAVKKVTPKDANKAPNPFM-- 118 Query: 147 KQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 T +P P L+ ++ F + EG+SN++ TA +++A+ + G TT NPLFI Sbjct: 119 --TTAPQDLDPQLNPKYNFDNYFEGTSNKLVRTAGEAVAQ--NPGKTT--FNPLFIFGPS 172 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G+GKTHL AI + P +V+Y+++ F +F AIR N + + +NID+LL+ Sbjct: 173 GVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLNFYQNIDVLLL 232 Query: 266 DDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q L G Q+ F H+ N L KQ++ +D+PP +L+ ++ R+ +RL+ G++ L Sbjct: 233 DDIQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERLITRLKWGLTAEL 292 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D ++R ILKN++ + I +EV +A VT + R+L+G LV + Sbjct: 293 SRPDLDLRKKILKNKI-----NHDGIMIPDEVFNFIANNVTENVRDLEGI---LVSLMAN 344 Query: 385 APILTAEIADELLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 A I EI L +V+ E K++ ++ IQ +V K++N+ ++ + +N R R +V+ Sbjct: 345 AVINNREIDLPLTKRVVSQAVRLEKKQISVQMIQEIVCKYFNLEQSVIQTNSRKREIVQA 404 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+ MYL+K T SF IG+ G +DH TVLHA + ++ +ET + + VE ++ L+ Sbjct: 405 RQITMYLAKKYTDSSFSHIGKIVGKKDHATVLHACKTIKDQIETSKSFRSSVEEIEVLL 463 >gi|115372312|ref|ZP_01459622.1| chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] gi|115370777|gb|EAU69702.1| chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] Length = 388 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 214/374 (57%), Gaps = 22/374 (5%) Query: 128 ITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 + + P + +++ +P+ P L RF F TF+ SN++ AA ++A+ Sbjct: 27 VVEAPPPSVHLAPTPVTATNAMRPPR----LSPRFTFGTFVVADSNQLPAAAAAAVADKP 82 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 H Y NPL+I+ GLGKTHLL A+ N +R P RVVYL++E F + ++R+ Sbjct: 83 GHHY-----NPLYIYGGTGLGKTHLLHAVGNLIWERNPAQRVVYLSSEQFTNEYVESVRE 137 Query: 248 NCALNLKDSLRN-IDLLLIDDMQFLQGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 + + R+ D+LLIDD+QFL GK Q EF + N+L + K +V +D PSE Sbjct: 138 HRMTEFRRKFRDECDVLLIDDIQFL-GKREETQKEFFYTFNTLYEQNKAIVLTSDTVPSE 196 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 + L+ R+RSR G+ + YE R +IL+ + E L + ++V +A+ + Sbjct: 197 IPGLEDRLRSRFAMGLLTDIREPSYETRVAILQKK-----AEAEGLGLPDDVAHFIAKHI 251 Query: 365 TTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 + REL+GA +L HS + + +T E A ++L ++ T ++ + +E IQR VA++Y Sbjct: 252 QKNVRELEGALVKLSAIHSLSRLPVTVEFAAQVLKDILPTHQS--VDVESIQREVARYYK 309 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 ++ L +RR + + RQVAMYLS+ +T SFPEI RF ++DH+TV+ AVRKVE + Sbjct: 310 VTVEALREDRRHKALAHARQVAMYLSRKLTKSSFPEIASRF-NKDHSTVISAVRKVEGLR 368 Query: 484 ETDITLKKEVELLK 497 ETD LK+E++ L+ Sbjct: 369 ETDAGLKRELDELE 382 >gi|124516518|gb|EAY58026.1| Chromosomal replication initiator protein (DnaA) [Leptospirillum rubarum] gi|206603405|gb|EDZ39885.1| Chromosomal replication initiator protein (DnaA) ORIGIN [Leptospirillum sp. Group II '5-way CG'] Length = 465 Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 134/435 (30%), Positives = 245/435 (56%), Gaps = 27/435 (6%) Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQ-GVEILVRSVALPS-----VEKTASSPSIT 129 V ++F++ ++NRY + + F+E + ++LV+ +P V + ++ Sbjct: 48 VGSSFIQRLVQNRYYKDLLTAFREVTQNPEISFDVLVQPENVPRKKRKVVRNSGPEGGLS 107 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 P+ P+ LG+ SP + S L+ R+ F ++ G N+ A AA +IA S Sbjct: 108 PGKPV-------PLPLGEDR-SPSWNSNLNPRYFFENYVVGVCNQFAHAAAFAIANNPSK 159 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NP ++ SVGLGKTHL+ AI N I P+L+V+Y+T E F+ SAI+ N Sbjct: 160 AY-----NPFYLFGSVGLGKTHLVSAIGNCMIALYPSLKVLYITTESFLNEMVSAIKFNK 214 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 ++ R ID+L++DD+QFL GK Q E + N+L ++ KQ++ ++D P+++ +L Sbjct: 215 MNEFRERYRKIDVLIMDDVQFLSGKERTQEELFYTFNALYENGKQIILSSDCMPNDIPTL 274 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R++SR G+ + + D+E + ILK ++A K+++ +V+ +A ++ ++ Sbjct: 275 EGRLKSRFGWGLIADIQIPDFETKVEILKGKMA-----QEKVDLPMDVVYFLANSIKSNI 329 Query: 369 RELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +L + + +T E+A LLS L+ + + ++ I + VA ++ + Sbjct: 330 RELEGAMIRLGAYGNLMGKPITIEVARNLLSDLMPLSR-ESISVDRILQEVADYFKVLPK 388 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 ++ S +R +T+V R VA+YL + +T +S+PEIGR G RDH+T +++ + VE+ LE+D Sbjct: 389 EIRSKKRHKTLVTARHVAVYLIRELTQKSYPEIGRELGGRDHSTAIYSFKMVEEKLESDP 448 Query: 488 TLKKEVELLKRLISE 502 L ++ LK+ + + Sbjct: 449 ALTSDIVYLKKKLEQ 463 >gi|309805918|ref|ZP_07699950.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 03V1-b] gi|308167694|gb|EFO69841.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 03V1-b] Length = 333 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 125/330 (37%), Positives = 191/330 (57%), Gaps = 18/330 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 3 LNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 57 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD+QF K I Sbjct: 58 HQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEGI 117 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 118 QEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAIL 177 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + E L I++ L +VA V T+ REL+GA LV + A I + + Sbjct: 178 RKK-----AEADGLGIDDNTLDYVASQVDTNIRELEGA---LVKVQAHATIEREDINLNL 229 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ + Sbjct: 230 AKEALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSRKL 289 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 T S P+IG+ FG +DHTTV+HA K K+ Sbjct: 290 TDSSLPKIGQEFGGKDHTTVMHAYEKNRKI 319 >gi|228471635|ref|ZP_04056409.1| chromosomal replication initiator protein DnaA [Capnocytophaga gingivalis ATCC 33624] gi|228277054|gb|EEK15740.1| chromosomal replication initiator protein DnaA [Capnocytophaga gingivalis ATCC 33624] Length = 478 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 152/483 (31%), Positives = 255/483 (52%), Gaps = 32/483 (6%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLK-FHSVLHNIVHLSVPTNFLK 82 ++ D R + NC S +K+ V DVY WF+ ++ N + + VP+ F Sbjct: 1 MNTDVRNIWENCLSF-------IKDNVTTDVYDVWFKPIEPVELTSDNTLVIMVPSMFFM 53 Query: 83 AWIKNRYLETI-TKLFQEEHSR---IQGVEILVR-------SVALPSVEKTASSPSITKL 131 WI++ Y+ I + L +E +R I +++ + LPS + A+S + Sbjct: 54 EWIEDHYINLIWSALTKELGARPKLIYNIKMENNPNKTEQATEQLPSSNRKATSMEVLGY 113 Query: 132 SPINTNISKSPIILGKQTISPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 ++ G I V S L+ F TFIEG SNR+A +A ++I E G Sbjct: 114 KQKPQQSYNPYVVPGLVEIEEVKVDSQLNPNKNFDTFIEGESNRLARSAGKAITE--RPG 171 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 T+ NPLFI VGLGKTHL AI N ++ P R++Y+ AE F +++ A ++N Sbjct: 172 GTS--FNPLFIFGGVGLGKTHLAHAIGNEIQEKHPKKRILYIEAEDFTKQYSVAAKNNNR 229 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + + ID+L+ID++QF K Q F + N L + KQ++ +D+ P +++ ++ Sbjct: 230 TDFIHFYQQIDVLIIDNVQFFASKPGTQDVFFQIFNHLHQNGKQLILTSDKAPVDIQDVE 289 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR + G+S L DY+MR IL+ AI ++ + ++EE++ ++A+ V T+ R Sbjct: 290 QRLLSRFKWGLSAELQAPDYQMRKRILQ---AILYRDG--VEMSEEIVDYIAQNVKTNIR 344 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+G L+ F +T ++A + + +V + K++ +E IQ +V++++ +S + Sbjct: 345 ELEGVNTSLMAEALFNKKEITLDLAKKAVDKIVKNIK-KEITVEYIQEIVSEYFQLSIEE 403 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L S R R VV+ RQ+AM+ +K T S IG+ G RDH TVLHA + V+ + ETD Sbjct: 404 LQSKTRKRHVVQARQLAMFFAKKYTKLSLANIGKSIGKRDHATVLHACKTVDNLNETDKQ 463 Query: 489 LKK 491 +K Sbjct: 464 FRK 466 >gi|326383909|ref|ZP_08205593.1| chromosomal replication initiation protein [Gordonia neofelifaecis NRRL B-59395] gi|326197368|gb|EGD54558.1| chromosomal replication initiation protein [Gordonia neofelifaecis NRRL B-59395] Length = 539 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/362 (35%), Positives = 208/362 (57%), Gaps = 20/362 (5%) Query: 147 KQTISPVFGS-PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 ++T +P G+ L ++ F TF+ G+SNR A +A ++AE + Y NP+FI Sbjct: 188 RETSAPDNGTTSLHPKYTFDTFVIGASNRFAHASAVAVAENPARAY-----NPMFIWGES 242 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A + S + P +RV Y++ E F F +++RD+ + K R+ID+LLI Sbjct: 243 GLGKTHLLHAAGHYSQRLFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRRYRDIDMLLI 302 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL+GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + Sbjct: 303 DDIQFLEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEDRLRTRFEWGLITDV 362 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + + KL ++VL +A + + REL+GA L+ +F Sbjct: 363 QPPDLETRIAILRKKAQMD-----KLAAPDDVLELIASKIERNIRELEGA---LIRVTAF 414 Query: 385 API----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 A + L +A+ +L L+ + I + A Y++S +DL +VR + Sbjct: 415 ASLNNTELDTTLAEVVLKALIPDSGPMDVSAASIVAVTADFYDLSVDDLCGPSKVRALTL 474 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ++MYL + +T S P+IG F DRDHTTV+HA +K+ K + + + +V+ L I Sbjct: 475 PRQISMYLCRELTDLSLPKIGETF-DRDHTTVMHADKKIRKEMHENRNIYDQVQELTARI 533 Query: 501 SE 502 + Sbjct: 534 KQ 535 >gi|110807608|ref|YP_691128.1| chromosomal replication initiation protein [Shigella flexneri 5 str. 8401] gi|110617156|gb|ABF05823.1| chromosomal replication initiation protein [Shigella flexneri 5 str. 8401] Length = 443 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 139/444 (31%), Positives = 232/444 (52%), Gaps = 26/444 (5%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRSVA-LPSVEKTASS 125 N + L P F+ W++++YL I L F + E+ + V P T++ Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNV 72 Query: 126 PSITKLSPINTNISKSPIILGKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + +++ + G + P + S ++ + F F+EG SN++A AA+ Sbjct: 73 AAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAAR 132 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 133 QVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDM 187 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRP 301 A+++N K R++D LLIDD+QF I+++ ++ +V Sbjct: 188 VKALQNNAIEEFKRYYRSVDALLIDDIQFFA---IKNDLRKSFSTPFTPCWKVSTDHSHL 244 Query: 302 PSELE---SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 S E ++ R++SR G++V + + E R +IL + + ++ + + EV Sbjct: 245 GSLFERDNGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAF 299 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ Sbjct: 300 FIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKT 358 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA R Sbjct: 359 VAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACR 418 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+E++ E +K++ L R +S Sbjct: 419 KIEQLREESHDIKEDFSNLIRTLS 442 >gi|291165897|gb|EFE27944.1| ATPase involved in DNA replication initiation [Filifactor alocis ATCC 35896] Length = 443 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 132/452 (29%), Positives = 242/452 (53%), Gaps = 39/452 (8%) Query: 53 DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 ++Y ++ RL+ + ++ + L + I+ YL+ + + +++ + +++++ Sbjct: 24 NIYKTFIDRLEPIMIKNDKLVLFATNQIILEMIEREYLDILNGILEKKSNSSLSIQLIL- 82 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 S++ S P K NI+ P ++ F +F+ G++ Sbjct: 83 -----SLDDLNSEPKEEKKDIYQKNITLIP------------------KYTFDSFVVGNN 119 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N +A +A ++A +H Y NPLFI+ VGLGKTHL+ AI N + + +++++YL Sbjct: 120 NVLAHSACVAVANDPAHSY-----NPLFIYGGVGLGKTHLMHAIGNHVLSQNKDVKILYL 174 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 ++E F ++I+D+ ++ R ++D+LLIDD+QF+ K Q EF H N+L + Sbjct: 175 SSETFTNELINSIKDDTNEEFRNKYRKDVDILLIDDIQFISEKERTQEEFFHTFNTLHGA 234 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ ++DR P E+ L R+RSR + G+ V + DYE R +IL+ + + P L Sbjct: 235 DKQIIISSDRAPKEIPMLADRLRSRFEMGLIVDIQPPDYETRIAILRKKAQEEKHHVPDL 294 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHS--FAPILTAEIADELLSHLVNTGETKK 408 V ++A+ + ++ REL+GA + +F +S +T E++ E L ++ + + + Sbjct: 295 -----VFEYIAKNIKSNIRELEGALTR-IFAYSDLTKREITPELSQEALKNIFQSKQHVE 348 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I+ VA+ ++I +D S R R + PRQ+AMYL + +T S P+IG FG RD Sbjct: 349 ITPTFIKEKVAESFSIQVDDFSSKGRKREIAYPRQIAMYLCRELTGLSLPKIGTEFGGRD 408 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 HTTV+HA K+ ++ D K+ +E LK+ I Sbjct: 409 HTTVMHACDKITSDIKIDEKTKELIENLKKDI 440 >gi|317401672|gb|EFV82297.1| chromosomal replication initiator protein dnaA [Achromobacter xylosoxidans C54] Length = 372 Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 185/327 (56%), Gaps = 14/327 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L++ F F+ G +N++A AA +AE Y NPLF++ VGLGKTHL+ A Sbjct: 34 SRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY-----NPLFLYGGVGLGKTHLIHA 88 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I NA + +RV Y+ A+ ++ A + + K ++DLLLIDD+QF GK Sbjct: 89 IGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 148 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +++ KQ++ +D P EL +D R+ SR G++V + + EMR + Sbjct: 149 RTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVA 208 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP--ILTAEI 392 IL + + E + + EEV +A+ + ++ REL+GA +++ F +LT ++ Sbjct: 209 IL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDV 263 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L++ ++ +E+IQ+ VA Y I D+ S RR + PRQVAMYL+K + Sbjct: 264 CKEALKDLLSV-SNGQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKEL 322 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 323 TQKSLPEIGDLFGGRDHTTVLHAVRKI 349 >gi|270291828|ref|ZP_06198043.1| replication initiation protein DnaA [Streptococcus sp. M143] gi|270279356|gb|EFA25198.1| replication initiation protein DnaA [Streptococcus sp. M143] Length = 453 Score = 210 bits (534), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 198/354 (55%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A +AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNIWAKSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPEARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L + KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHSNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYNFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQLLVIPIDKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIEAIKKKI 452 >gi|116510844|ref|YP_808060.1| chromosomal replication initiation protein [Lactococcus lactis subsp. cremoris SK11] gi|125622883|ref|YP_001031366.1| chromosomal replication initiation protein [Lactococcus lactis subsp. cremoris MG1363] gi|123320723|sp|Q033I4|DNAA_LACLS RecName: Full=Chromosomal replication initiator protein DnaA gi|166214677|sp|A2RH74|DNAA_LACLM RecName: Full=Chromosomal replication initiator protein DnaA gi|116106498|gb|ABJ71638.1| ATPase for DNA replication initiation [Lactococcus lactis subsp. cremoris SK11] gi|124491691|emb|CAL96609.1| replication initiation protein DnaA [Lactococcus lactis subsp. cremoris MG1363] gi|300069621|gb|ADJ59021.1| chromosomal replication initiation protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 454 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 128/362 (35%), Positives = 209/362 (57%), Gaps = 17/362 (4%) Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P+ + K T SP+ S L+ ++ F F++G NR L AA ++A+ Y NPLFI Sbjct: 103 PLSVAKPT-SPLV-SGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGDTY-----NPLFI 155 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHL+ AI N + P R+ Y+++E F+ + +A R N + +++ RN+D Sbjct: 156 YGGAGLGKTHLMHAIGNQILTDNPTARIKYVSSENFVNDYVNATRKNQMESFENTYRNLD 215 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLL+DD+QF K ++EF + N+L D Q+V +DR P EL +L+ R+ SR G+ Sbjct: 216 LLLLDDVQFFSDKEGTKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGL 275 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + + DYE R +IL + + E L E L ++A + ++ REL+GA N++ F Sbjct: 276 TTDITAPDYETRMAIL-----LIKSESSHLEFPSETLSYIAGQIDSNVRELEGALNRVEF 330 Query: 381 --RHSFAPILTAEIADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 R + I+ E A + L L N + + I+ IQ VA +Y+IS +DL+ +R + Sbjct: 331 VARANGISIVDIETASQALRSLKNATQQSLSNLTIKKIQDEVANYYHISFSDLVGPKRPK 390 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 + PRQ+AMYL + + S P IG FG RDHTTV++A +++ ++ D+ ++K+++ + Sbjct: 391 EIAFPRQIAMYLVRELLGTSLPAIGTAFGGRDHTTVMYAYKQISDKMKNDMDVQKDIDSI 450 Query: 497 KR 498 KR Sbjct: 451 KR 452 >gi|289166910|ref|YP_003445177.1| DNA biosynthesis, initiation, binding protein [Streptococcus mitis B6] gi|288906475|emb|CBJ21305.1| DNA biosynthesis, initiation, binding protein [Streptococcus mitis B6] Length = 453 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 201/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMDKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N L ++ KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNVLHNNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVNQMLVIPIDKIQNEVGNFYGVSVKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKI 452 >gi|83815237|ref|YP_444159.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] gi|83756631|gb|ABC44744.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] Length = 524 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 124/341 (36%), Positives = 197/341 (57%), Gaps = 12/341 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F FIEG+ NR+A +AA SIA G T+ NP ++ VGLGKTHL+QAI Sbjct: 185 LNDSYTFDRFIEGACNRLARSAAHSIAT--DPGETS--FNPFLVYGGVGLGKTHLIQAIG 240 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N R + V Y+++E F F +I++N R +D+L++DD+QF GK Sbjct: 241 NHVAARDASKTVFYVSSERFTTEFVQSIQENQIGEFSTFYRQVDVLIVDDVQFFGGKEKT 300 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H+ N+L + Q+V +ADRPP E++ L+ R+ SR Q G+S L + R SIL Sbjct: 301 QEEFFHIFNALRQAGNQIVLSADRPPREIDGLEERLLSRFQWGLSADLKPPGLDTRISIL 360 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 + + ED ++++++V+ +A+++ ++ REL+GA +L+ + + +T ++A E Sbjct: 361 RRK-----AEDDGIDLDDDVVEFIAQSIESNIRELEGALIRLLAHATLHQLDITLDLAKE 415 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L L + ++DIQR+V +H IS+ + S R R V R RQ+AMY +K T Sbjct: 416 VLHDLFQE-RAATLTVDDIQRIVCEHLGISQEKMRSKTRKRDVTRARQIAMYFTKKHTQH 474 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S +IG FG RDH+TV+HA VE + D + + V+ + Sbjct: 475 SLKDIGLHFGGRDHSTVIHANNAVEDRMADDESFRDTVDAI 515 >gi|37521042|ref|NP_924419.1| chromosomal replication initiation protein [Gloeobacter violaceus PCC 7421] gi|61212697|sp|Q7NKK4|DNAA_GLOVI RecName: Full=Chromosomal replication initiator protein DnaA gi|35212038|dbj|BAC89414.1| chromosomal replication initiator protein [Gloeobacter violaceus PCC 7421] Length = 442 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 233/466 (50%), Gaps = 37/466 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ + S LK ++ + +W + + + + P F ++W++ Y I + Sbjct: 2 ETLWDGILSHLKGRLSRPTFETWIKPATAQQFEQDCLIIRTPNPFARSWLQQHYAGAIAQ 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 ++ R V+ +V + +++ P N Sbjct: 62 AGEQVIGRPIQVDFIVSEQSEEALKPVIEREPAPAAPPANV------------------- 102 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+S++ FS F+ G++NR+A AA ++AE+ Y NPLF+ VGLGKTHL+QA Sbjct: 103 ASLNSKYTFSRFVVGANNRMAHVAALAVAEMPGCNY-----NPLFLCGGVGLGKTHLMQA 157 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + + ++ Y++ E F AIR + ++ R +DLL+IDD+QF++GK Sbjct: 158 IGHYRLDIDTRTKIAYVSTERFANELIEAIRRDAMQTFREHYRRVDLLMIDDIQFIEGKE 217 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ+V A+DRPP + L R+ SR G+ + D E R + Sbjct: 218 YTQEEFFHTFNALYESGKQIVIASDRPPQLIPRLQERLSSRFSMGLITDIQQPDIETRMA 277 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIA 393 IL+ + E + + ++V+ H+A TT+ REL+GA + V S + + +T E Sbjct: 278 ILQKK-----AEYENMFVPQDVIHHIASAYTTNIRELEGALIRAVAYVSISGLPMTVETI 332 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 +LS GE E I +V +S D+ S+ R R + + RQ+ MYL + T Sbjct: 333 SPILSPPRTRGEITD---EAILELVCDELKVSAEDMRSDSRRRDISQARQLCMYLLRKYT 389 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 S P+IG+ G +DHTTVL+A+ K+E+ D +++ LL+RL Sbjct: 390 DLSLPKIGQALGGKDHTTVLYAIDKIEQSKIRDPEVQR---LLQRL 432 >gi|315650192|ref|ZP_07903267.1| DNA-directed DNA replication initiator protein [Eubacterium saburreum DSM 3986] gi|315487549|gb|EFU77857.1| DNA-directed DNA replication initiator protein [Eubacterium saburreum DSM 3986] Length = 462 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 116/352 (32%), Positives = 203/352 (57%), Gaps = 8/352 (2%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S L+ + F TF+ G SN +A A ++AE NP FI+ VGLGKTHL Sbjct: 114 LLSSNLNPAYTFDTFVVGKSNDLAHATAIAVAESPGSQNPGEHYNPFFIYGGVGLGKTHL 173 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + +IA+ ++ P+ ++Y+++E F+ + A++++ + RN+D+LLIDD+QF+ Sbjct: 174 MHSIAHYILEHNPDANILYVSSEKFLNEYIDALKNSNLAEYRAKYRNVDVLLIDDIQFIG 233 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK IQ E H N+L + KQ++ ++D+PP EL++L+ R+RSR GV+V + D+E Sbjct: 234 GKDAIQEELFHTFNALYEQKKQIILSSDKPPMELKNLEERLRSRFAWGVAVEIFSPDFET 293 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILT 389 R +IL+ S++E NI+ EV+ +A + ++ R L+GA N+L + R + + Sbjct: 294 RMAILR-----SKEERDGKNIDNEVIQFIATNIKSNIRMLEGALNKLYAMSRLNKNQEID 348 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A +L ++ K+ E I +VA H+NI+ +L + R V R + +YL Sbjct: 349 IDLAKSVLKDMITPDAPTKITSEYIATVVADHFNITVAELKAKGRKEPVATARHITVYLC 408 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT + +IG+ GDRDH+T++++ + K + D L + +E +K+ IS Sbjct: 409 RKMTNDTQTKIGQFLGDRDHSTIVNSEDVITKRITADSELNQTIETIKKKIS 460 >gi|33603963|ref|NP_891523.1| chromosomal replication initiation protein [Bordetella bronchiseptica RB50] gi|61212740|sp|Q7WDJ9|DNAA_BORBR RecName: Full=Chromosomal replication initiator protein DnaA gi|33568939|emb|CAE35353.1| chromosomal replication initiator protein [Bordetella bronchiseptica RB50] Length = 480 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 185/327 (56%), Gaps = 14/327 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L++ F F+ G +N++A AA +AE Y NPLF++ VGLGKTHL+ A Sbjct: 142 SRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY-----NPLFLYGGVGLGKTHLIHA 196 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I NA + +RV Y+ A+ ++ A + + K ++DLLLIDD+QF GK Sbjct: 197 IGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 256 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +++ KQ++ +D P EL +D R+ SR G++V + + EMR + Sbjct: 257 RTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVA 316 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEI 392 IL + + E + + EEV +A+ + ++ REL+GA +++ F +LT ++ Sbjct: 317 IL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDV 371 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L++ ++ +E+IQ+ VA Y I D+ S RR + PRQVAMYL+K + Sbjct: 372 CKEALKDLLSVS-NGQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKEL 430 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 431 TQKSLPEIGDLFGGRDHTTVLHAVRKI 457 >gi|297588057|ref|ZP_06946701.1| ATPase [Finegoldia magna ATCC 53516] gi|297574746|gb|EFH93466.1| ATPase [Finegoldia magna ATCC 53516] Length = 481 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 125/356 (35%), Positives = 205/356 (57%), Gaps = 18/356 (5%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K +SP +G L S++ F TF++G +N +AL AA ++A+ + Y NPLFIH G Sbjct: 131 KTDLSP-YGKNLISKYKFDTFVKGKNNELALAAALAVAQNPATAY-----NPLFIHGKAG 184 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL---NLKDSLRNIDLL 263 LGKTHL+ AIA+ +K P RV+Y T+E F S+I D + RNID+L Sbjct: 185 LGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTKKNSQFRQKYRNIDVL 244 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF+ GK Q EF H N L + KQ++ ++DRPP E+++L+ R+ SR + G+ Sbjct: 245 LIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKTLEERLVSRFEWGLMA 304 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + DYE R +I+ L + ++ E++ ++A V ++ REL+GA +V + Sbjct: 305 DIQPPDYETRVAIINEYL-----DRNNTSLTPEIIDYIAMNVKSNIRELEGAVMNVVGQK 359 Query: 383 SFAPI--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + +T ++A +L L+ + + + I+ I V YN+S++DLLS +R + + Sbjct: 360 TLIGDGNITLDLAKNVLKQLIADTQLRPVTIDLIIESVCDRYNVSQDDLLSKKRSKQIAY 419 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 PRQ+AMY+S+ + S I FG +DH+TV+H ++K+E ++ +E++ L Sbjct: 420 PRQIAMYVSRKLLDISLVSIASSFG-KDHSTVMHGIKKIENDIKKSSEFDEEIDNL 474 >gi|255532251|ref|YP_003092623.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] gi|255345235|gb|ACU04561.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] Length = 476 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 132/485 (27%), Positives = 254/485 (52%), Gaps = 31/485 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +++ C ++ +K+ + + +WF+ + + ++ + VP+ F W++ Y+ Sbjct: 1 MQITCTQVWNNCLQIIKDNIPAQSFKTWFEPISALKLEDKVLTVQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQEE---HSRIQGVEILVRS--------VALPSVEKTASSPSITKLSPINTNIS 139 + K +++ R++ ++ +S +PS A + + P+N N Sbjct: 61 GLLRKTVKQQLGDEGRLEYNIVVDKSSNGALPYTTNMPSNGNGAGNKKQSMPVPVNINRD 120 Query: 140 -KSPII---LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 K+P + L K + P L+ + F ++EG NR+A +A ++A G T+ Sbjct: 121 IKNPFVIPGLKKMNVDP----QLNPGYTFEAYVEGDCNRLARSAGHAVAA--KPGATS-- 172 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL I+ S GLGKTHL QAI N + P+ V+Y++ E F +F ++++N + + Sbjct: 173 FNPLMIYGSSGLGKTHLAQAIGNEIRRNLPDKLVIYVSCEKFCQQFVESLKNNTINDFVN 232 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 + +D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ S Sbjct: 233 FYQAMDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQIIITSDKAPKDLSGLEERLLS 292 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R + G+S L + + E R +IL+ ++ + P +EV+ +VA + + REL+GA Sbjct: 293 RFKWGLSADLQVPELETRIAILRKKMYADGIDLP-----DEVVEYVAHNIDNNVRELEGA 347 Query: 375 FNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 L+ + + + ++A +L + + TK++ I+ IQ++V ++ + + L + Sbjct: 348 MVSLLAQSTMNRKEIDLQLAKSMLKNFIKN-TTKEVSIDYIQKLVCDYFEVPVHLLKAPT 406 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R VV+ RQ++MYL+K MT S IG FG RDH+TV++A + VE +++TD + V Sbjct: 407 RKREVVQARQISMYLAKGMTKSSLKTIGAFFGGRDHSTVIYACQTVEDLIQTDKKFRAYV 466 Query: 494 ELLKR 498 +++ Sbjct: 467 NDIEK 471 >gi|325102758|ref|YP_004272412.1| chromosomal replication initiator protein DnaA [Pedobacter saltans DSM 12145] gi|324971606|gb|ADY50590.1| chromosomal replication initiator protein DnaA [Pedobacter saltans DSM 12145] Length = 475 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 136/484 (28%), Positives = 252/484 (52%), Gaps = 30/484 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E C S++ +K+ + + +WF+ + + +++ + VP+ F W++ Y+ Sbjct: 1 MEKTCASVWNSCLQIIKDNIPAQSFKTWFEPISPLKLEGSVLTIQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQEE---HSRIQGVEILVRSVA-------LPSVEKTASSPSITKLSPINTNIS- 139 + K + + R++ ++ +S A +PS A + + P+ N Sbjct: 61 GLLRKTIKNQLGDAGRLEYNIVVEKSSAQKPYTTNMPSSGNGAEGKNQSMPMPVALNKDI 120 Query: 140 KSPII---LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 K+P + L K + P L+ + F FIEG NR+A +A ++A G T+ Sbjct: 121 KNPFVIPGLKKLQVDP----QLNPNYTFENFIEGDCNRLARSAGYAVAA--KPGGTS--F 172 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL I+ VGLGKTHL QAI N P+ V+ ++ E F +F ++++N + + Sbjct: 173 NPLMIYGGVGLGKTHLAQAIGNEIKANMPDKLVICVSCEKFCQQFVDSLKNNTINDFVNF 232 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + +D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ SR Sbjct: 233 YQAMDVIIMDDVHNFAGKDKTQDIFFHIFNHLHQSGKQLILTSDKAPKDLAGLEERLLSR 292 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+S L + D E R +ILK ++ E P E+V+ +VA + + REL+GA Sbjct: 293 FKWGLSADLTVPDIETRMAILKKKMYQDGIELP-----EDVIEYVAHNIDNNVRELEGAM 347 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 L+ + + + +A ++L + + +K++ +E IQ++V +++ + + + S R Sbjct: 348 VSLLAQSTLNKKEVDLALAKQMLKNFIKN-SSKEISMEYIQKLVCEYFEVPVDMVKSKTR 406 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R +V+ RQ++MYL+K T S IG FG RDH+TV++A + VE +++TD K V Sbjct: 407 KREIVQARQISMYLAKSHTKTSLKSIGAFFGGRDHSTVIYACQTVEDLIDTDKKFKTYVH 466 Query: 495 LLKR 498 +++ Sbjct: 467 DIQK 470 >gi|297570614|ref|YP_003696388.1| chromosomal replication initiator protein DnaA [Arcanobacterium haemolyticum DSM 20595] gi|296930961|gb|ADH91769.1| chromosomal replication initiator protein DnaA [Arcanobacterium haemolyticum DSM 20595] Length = 544 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 123/350 (35%), Positives = 203/350 (58%), Gaps = 20/350 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G SNR A A +++E Y NPLF+++ G+GKTHLL AI Sbjct: 195 LNPRYTFETFVIGESNRFAHATALAVSEQPGSTY-----NPLFLYSESGMGKTHLLHAIG 249 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--- 274 N+ + PN +V+Y++AE F F +A+ + N KD R +D+LLIDD+QFL G+ Sbjct: 250 NSVQEMFPNRKVLYVSAEEFTNAFINALANGQMHNFKDQFRTVDVLLIDDIQFLSGRDRS 309 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF H N+L+++ KQ+V +D P+ L + R+ SR G++ + L + E R + Sbjct: 310 RTLEEFFHTFNALINANKQIVITSDVAPNLLVDFEDRMISRFNSGITAAIDLPNLETRIA 369 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 IL NR A+++ L++ +V+ +A +TT+ RE++GA ++ +FA + ++ Sbjct: 370 IL-NRKAVAE----GLDVPRDVVEFIASKMTTNVREMEGALRRV---RAFADLTKQSISL 421 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A+ L +++ + ++ I V+ ++N+ DL S R R++ +PR VAMYL + Sbjct: 422 ELAESQLKDMISDPTSIQVTAGMIVAQVSSYFNVPLADLKSPTRTRSLTQPRHVAMYLCR 481 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+I F RDHTTV++AVRKVE ++ T+ +V L +I Sbjct: 482 ELTDLSLPKIAEEFNRRDHTTVMNAVRKVEALMTEKQTIFTQVSELTTII 531 >gi|311103225|ref|YP_003976078.1| chromosomal replication initiation protein [Achromobacter xylosoxidans A8] gi|310757914|gb|ADP13363.1| chromosomal replication initiation protein [Achromobacter xylosoxidans A8] Length = 487 Score = 209 bits (533), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 185/327 (56%), Gaps = 14/327 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L++ F F+ G +N++A AA +AE Y NPLF++ VGLGKTHL+ A Sbjct: 149 SRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY-----NPLFLYGGVGLGKTHLIHA 203 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I NA + +RV Y+ A+ ++ A + + K ++DLLLIDD+QF GK Sbjct: 204 IGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 263 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +++ KQ++ +D P EL +D R+ SR G++V + + EMR + Sbjct: 264 RTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVA 323 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEI 392 IL + + E + + EEV +A+ + ++ REL+GA +++ F +LT ++ Sbjct: 324 IL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDV 378 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L++ ++ +E+IQ+ VA Y I D+ S RR + PRQVAMYL+K + Sbjct: 379 CKEALKDLLSVS-NGQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKEL 437 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 438 TQKSLPEIGDLFGGRDHTTVLHAVRKI 464 >gi|300865784|ref|ZP_07110539.1| Chromosomal replication initiator protein dnaA [Oscillatoria sp. PCC 6506] gi|300336225|emb|CBN55694.1| Chromosomal replication initiator protein dnaA [Oscillatoria sp. PCC 6506] Length = 452 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 138/464 (29%), Positives = 247/464 (53%), Gaps = 30/464 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ V RL+ Q+ + +W + + +N + + P F + W++ Y++TI + Sbjct: 4 EILWNQVLERLQVQLSRPTFETWIKTASPEQLENNCLIIRTPNPFARNWLQKYYIKTIAQ 63 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + ++ I G + + L E T + + SP +I +S Q P Sbjct: 64 VVED----ILGHSVDIYLTTLNGDETTNNGSELIWPSP---DIPES---HSHQQPKP--- 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ +++F+ F+ GS+NR+A A+ ++AE + NPLF+ VGLGKTHL+QA Sbjct: 111 ANLNPKYIFARFVVGSNNRMAHAASLAVAESPGREF-----NPLFLCGGVGLGKTHLMQA 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + ++ P+ ++ Y++ E F +AIR + + +D+ R D+LL+DD+QF++GK Sbjct: 166 IGHYRLEIDPDAKIFYVSTEKFTNDLIAAIRKDSMQSFRDNYRAADVLLVDDIQFIEGKE 225 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V A+DRPP+++ L R+ SR G+ + L D E R + Sbjct: 226 YTQEEFFHTFNTLHEAGKQIVLASDRPPNQIPRLQERLCSRFSMGLIADIQLPDLETRMA 285 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL+ + P+ +V+ ++A + ++ REL+GA + V ++ I + Sbjct: 286 ILQKKAEYENMRLPR-----DVIEYIASSYKSNIRELEGALIRAV---AYLSITGLPMTV 337 Query: 395 ELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L+ ++N +T+++ + I V +++S +L N R R + RQV MYL + Sbjct: 338 ENLAPILNP-QTERLEASPDAILTAVGDVFDLSVEELKGNSRRREISLARQVGMYLMRQH 396 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 T S P+IG FG +DHTTVL++ K+ ++ TD L + + L Sbjct: 397 TDLSLPKIGEVFGGKDHTTVLYSCDKIAQLRNTDPNLSQTLRQL 440 >gi|317123178|ref|YP_004097290.1| chromosomal replication initiator protein DnaA [Intrasporangium calvum DSM 43043] gi|315587266|gb|ADU46563.1| chromosomal replication initiator protein DnaA [Intrasporangium calvum DSM 43043] Length = 579 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 205/345 (59%), Gaps = 13/345 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR AA ++AE + Y NPLF++ GLGKTHLL AI Sbjct: 240 LNPKYTFDTFVIGASNRFGHAAAIAVAEAPAKAY-----NPLFVYGESGLGKTHLLHAIG 294 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + PN+RV Y+ +E F F ++IRD+ A + R++D+LLIDD+QFLQGKL Sbjct: 295 HYARTMFPNVRVRYVNSEEFTNDFINSIRDDKASAFQSRYRSVDVLLIDDIQFLQGKLQT 354 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V +D PP EL + R+R+R + G+ + D E R +IL Sbjct: 355 QEEFFHTFNTLHNANKQIVITSDLPPKELSGFEDRMRTRFESGLLTDVQPPDLETRIAIL 414 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 + + AI ++ +++ ++VL ++A +T+ REL+GA ++ F + + +A+ Sbjct: 415 RKK-AIQER----MSVPDDVLEYIASNFSTNIRELEGALIRVTAFSNLNRQAVDLPLAEV 469 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L ++ ++ I + + +Y ++ DL + R R +V PRQ+AMYL + MT Sbjct: 470 VLKDVLPNETPNQVTAATIMAVTSAYYAVTIEDLCGSSRSRHLVTPRQIAMYLCREMTDL 529 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 S P+IG+ FG RDHTTV+HA RK+ +++ + +V EL R+ Sbjct: 530 SLPKIGQHFGGRDHTTVMHADRKIRELMSERRAIYNQVTELTNRI 574 >gi|84497194|ref|ZP_00996016.1| chromosomal replication initiator protein [Janibacter sp. HTCC2649] gi|84382082|gb|EAP97964.1| chromosomal replication initiator protein [Janibacter sp. HTCC2649] Length = 516 Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 124/331 (37%), Positives = 197/331 (59%), Gaps = 18/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 177 LNPKYTFDTFVIGASNRFANAAALAVAETPAKAY-----NPLFIYGESGLGKTHLLHAIG 231 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + P+++V Y+ +E F F ++IRD+ A N + R++D+LLIDD+QFLQGK+ Sbjct: 232 HYARNLYPHVKVRYVNSEEFTNDFINSIRDDKAANFQRRYRDVDVLLIDDIQFLQGKVQT 291 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQVV +D PP L + R+RSR + G+ + D E R +IL Sbjct: 292 QEEFFHTFNTLHNANKQVVITSDLPPKLLSGFEERMRSRFEWGLMTDVQPPDLETRIAIL 351 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + A KL++ ++VL +A ++T+ REL+GA L+ +FA + + + Sbjct: 352 RKKAA-----QEKLSVPDDVLEFIASRISTNIRELEGA---LIRVTAFASLNRQPVDISL 403 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ ++ I A ++ ++ DL R R +V RQ+AMYL + + Sbjct: 404 AEIVLKDLIPHDSANQITSATIMAQTAAYFGLTLEDLQGQSRSRVLVTARQIAMYLCREL 463 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG++FG RDHTTV+HA +K+ +++ Sbjct: 464 TDLSLPKIGQQFGGRDHTTVMHADKKIRQLM 494 >gi|284047387|ref|YP_003397726.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] gi|283951608|gb|ADB46411.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] Length = 386 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 218/380 (57%), Gaps = 20/380 (5%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 ++ A+ P K +P KSP L ++ F + L R+ F F+ G+SNR A A Sbjct: 15 QEPAAEPE--KTAPAAPPEKKSPASLPQKP----FVTNLSPRYTFDNFVVGNSNRFAKAA 68 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A ++A + Y NP F+ + GLGKTHL+ AI N K P+++++Y+++E F Sbjct: 69 AMAVANNPAFAY-----NPFFLFSDSGLGKTHLMNAIGNQIRKNHPDMKILYISSETFTN 123 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 ++ N ++ R+ID+LLIDD+QFL+ + Q EF H N+L + KQ++ ++ Sbjct: 124 ELIESVEHNRLEAFREKYRSIDVLLIDDIQFLRNRESTQEEFFHTFNTLEKANKQIIISS 183 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DRPP+EL++L+ R+ SR G++ + D E R +IL+N LA + K + +V++ Sbjct: 184 DRPPAELDTLEERMISRFNSGLTADIQHPDLETRMAILQN-LAHTDK----VPFPNDVIL 238 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A ++T++ REL+GA+N++ + + PI T E+ L L + + ++ IQ+ Sbjct: 239 LIASSITSNIRELEGAYNRVCAYSTVSKEPI-TLELCRSALKELNLLDTPQFVTVDAIQQ 297 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA H+ + R +L+ +R R V PR +A+YL+K M S +IG FG RDH+T++HA Sbjct: 298 QVADHFRLHRAELIEKKRTRRVAVPRMIAIYLTKEMAGLSLKKIGECFGGRDHSTIIHAC 357 Query: 477 RKVEKMLETDITLKKEVELL 496 K++K + D L +E++ L Sbjct: 358 EKIQKDRQEDPELNREIDAL 377 >gi|284051271|ref|ZP_06381481.1| chromosomal replication initiation protein [Arthrospira platensis str. Paraca] gi|291566281|dbj|BAI88553.1| chromosomal replication initiator protein DnaA [Arthrospira platensis NIES-39] Length = 453 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 142/471 (30%), Positives = 244/471 (51%), Gaps = 32/471 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ E ++ V RL+ Q+G Y +W + S+ ++ + +S F W++ Y Sbjct: 1 MDISVEQLWNQVLERLQLQLGEPTYNTWIKTAIATSLENHCLVISTANPFACNWLQKHYR 60 Query: 91 ETITKLFQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 E I + Q+ I G +EI + T + + + N +S S + + Sbjct: 61 EIIADVVQD----ILGDRLEICI----------TTGTGELVTIDHHNPRVSSSGLDTVGE 106 Query: 149 TISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + V P L+S+++FS F+ G+ +R+A A+ ++AE + NPLF+ VGL Sbjct: 107 VVPTVHKPPHLNSKYMFSQFVVGAGSRLAHAASLAVAESPGREF-----NPLFLCGGVGL 161 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI + ++ P RV Y++ E F +AIR + + +D R D+LL+DD Sbjct: 162 GKTHLMQAIGHYRLEINPLARVFYVSTEKFTNDLITAIRRDSMQSFRDHYRAADVLLVDD 221 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK Q EF H N+L ++ KQ+V A+DRPP+++ L R+ SR G+ + Sbjct: 222 IQFIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPTKISGLQDRLCSRFSMGLVADIQP 281 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ + E + + V+ ++A T++ REL+GA + V S + Sbjct: 282 PDLETRMAILQKK-----AEYENMRLPPAVIEYIATNYTSNIRELEGALIRAVAYISISS 336 Query: 387 I-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +T E +L+ E+ E + + VA+ + +S DL + R R + RQV Sbjct: 337 LPMTVENIAAVLTPKEQRSESSP---EIVIQAVAEKFKVSVEDLKGHSRRREISLARQVG 393 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 MYL + T S P+IG FG +DHTTV++ K+ K + D L + ++ L Sbjct: 394 MYLMRQHTDLSLPKIGEVFGGKDHTTVMYGCEKITKRRDRDSELHQILQQL 444 >gi|314965762|gb|EFT09861.1| replication initiator protein DnaA [Propionibacterium acnes HL082PA2] Length = 474 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 196/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 128 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 182 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 183 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 242 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 243 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 302 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 303 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 354 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 355 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 414 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG F +DHTTV+HA RK+ ++ Sbjct: 415 IAMYLCRELTDLSLPKIGAEFSGKDHTTVMHADRKIRALM 454 >gi|314922677|gb|EFS86508.1| replication initiator protein DnaA [Propionibacterium acnes HL001PA1] gi|314982903|gb|EFT26995.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA3] gi|315091209|gb|EFT63185.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA4] gi|315094443|gb|EFT66419.1| replication initiator protein DnaA [Propionibacterium acnes HL060PA1] gi|315105163|gb|EFT77139.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA2] gi|327328938|gb|EGE70698.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL103PA1] Length = 474 Score = 209 bits (532), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 196/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 128 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 182 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 183 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 242 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 243 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 302 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 303 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 354 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 355 NQQSVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 414 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG F +DHTTV+HA RK+ ++ Sbjct: 415 IAMYLCRELTDLSLPKIGAEFSGKDHTTVMHADRKIRALM 454 >gi|307711216|ref|ZP_07647638.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK321] gi|307617178|gb|EFN96356.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK321] Length = 453 Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/354 (35%), Positives = 200/354 (56%), Gaps = 15/354 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N L + KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNVLHSNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVNQMLVIPIDKIQNEVGNFYGVSVKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKI 452 >gi|145221421|ref|YP_001132099.1| chromosomal replication initiation protein [Mycobacterium gilvum PYR-GCK] gi|145213907|gb|ABP43311.1| chromosomal replication initiator protein DnaA [Mycobacterium gilvum PYR-GCK] Length = 492 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/458 (31%), Positives = 245/458 (53%), Gaps = 42/458 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W + ++ + LSVPT F++ I+ E I + Q VE+ VR +A Sbjct: 39 AWLKLVRPLVITEGFALLSVPTPFVQNEIERHLREPIVAALSRQLG--QRVELGVR-IAD 95 Query: 117 PSVEKTASSPSITKLS-PINTNISKS------------PIILGKQTISPVFGS---PLDS 160 P+ + ++T S P +T+ P + S S L+ Sbjct: 96 PAADDVNDGAAVTAASVPADTDEVDDDLAARASAEESWPSYFNRAKTSAEDDSLSVNLNR 155 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 R+ F TF+ G+SNR A A+ +IAE + Y NPLFI GLGKTHLL A N + Sbjct: 156 RYTFETFVIGASNRFAHAASLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYA 210 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 + P +RV Y++ E F F +++RD+ + K + R+ID+LL+DD+QF++GK IQ E Sbjct: 211 QRLFPGMRVKYVSTEEFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQEE 270 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Sbjct: 271 FFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKK 330 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADE 395 + +L++ ++VL +A + + REL+GA L+ +FA + + +A+ Sbjct: 331 AQMD-----RLDVPDDVLELIASRIERNIRELEGA---LIRVTAFASLNKTSIDKSLAEI 382 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L L++ T ++ I A+++ S ++L + R + + RQ+AMYL + +T Sbjct: 383 VLRDLISDPGTMQISTAAIMAATAEYFETSVDELRGPGKTRALAQSRQIAMYLCRELTDL 442 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 S P+IG+ FG RDHTTV++A EK + ++ ++EV Sbjct: 443 SLPKIGQAFG-RDHTTVMYA----EKKIRAEMAERREV 475 >gi|302380126|ref|ZP_07268599.1| chromosomal replication initiator protein DnaA [Finegoldia magna ACS-171-V-Col3] gi|302312068|gb|EFK94076.1| chromosomal replication initiator protein DnaA [Finegoldia magna ACS-171-V-Col3] Length = 487 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 145/481 (30%), Positives = 246/481 (51%), Gaps = 37/481 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ--- 98 +S+ K ++ + +W LK + + L P F K I N+Y + I K Sbjct: 11 ISNTFKQEMSDLNFNTWIAPLKPLYLTNTEFILLSPNRFTKKTIYNKYYDDIQKYLDFIS 70 Query: 99 -----------------EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS 141 ++ + IQ I + L + +++ I +P+ T ++ Sbjct: 71 NVKRKVVIIDRYEMDNYKDENIIQNQNIDGQRSILVNEDESEEKYKIEDTNPVATQPEQT 130 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 +QT +G L +++ F TF++G +N +AL AA ++A+ + Y NPLFI Sbjct: 131 QEQAEEQTDFSPYGKNLIAKYKFDTFVKGKNNELALAAALAVAQNPATAY-----NPLFI 185 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL---NLKDSLR 258 H GLGKTHL+ AIA+ +K P RV+Y T+E F S+I D + R Sbjct: 186 HGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTKKNSQFRQKYR 245 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 NID+LLIDD+QF+ GK Q EF H N L + KQ++ ++DRPP E+++L+ R+ SR + Sbjct: 246 NIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKTLEERLVSRFE 305 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ + DYE R +I+ L + P E++ ++A V ++ REL+GA Sbjct: 306 WGLMADIQPPDYETRVAIVNEYLDRNNTSLPP-----EIIDYIAMNVKSNIRELEGAVMN 360 Query: 378 LVFRHSFAPI--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 +V + + +T ++A +L L+ + + + I+ I V YN++ +DLLS +R Sbjct: 361 VVGQKTLIGDGNITLDLAKNVLKQLIAETQLRPVTIDLIIECVCDRYNVTLDDLLSKKRS 420 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 + + PRQ+AMY+S+ + S I FG +DH+TV+H ++K+E ++ + +E+E Sbjct: 421 KQIAYPRQIAMYVSRKLLDISLVSIASSFG-KDHSTVMHGIKKIESDIKKNSEFDEEIEN 479 Query: 496 L 496 L Sbjct: 480 L 480 >gi|221633151|ref|YP_002522376.1| chromosomal replication initiator protein DnaA [Thermomicrobium roseum DSM 5159] gi|254777921|sp|B9L0U6|DNAA_THERP RecName: Full=Chromosomal replication initiator protein DnaA gi|221156567|gb|ACM05694.1| chromosomal replication initiator protein DnaA [Thermomicrobium roseum DSM 5159] Length = 465 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 148/469 (31%), Positives = 241/469 (51%), Gaps = 31/469 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + ++ + L +V + +W + + ++ ++ P++F ++N++ Sbjct: 1 MRTKQLWQVALGDLAKRVSRANFETWLKHTELVALEGERATIAAPSSFAAEQLRNKFAAD 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ---T 149 I QE S + G I V +V + P ++ KQ T Sbjct: 61 I----QETLSLLLGRPIAVHF----TVHGQDDEEHPVQRRPQRRALASEEGSASKQLSLT 112 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 SP G L+ R+ F F+ G +NR+A AA ++A+ + NPLFI+ VGLGK Sbjct: 113 PSPEHG--LNPRYTFEKFVVGPNNRLAHAAALAVADRPGE-----KFNPLFIYGGVGLGK 165 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + ++ +P L+V Y+++E F +AIR + ++ R ID+L+IDD+Q Sbjct: 166 THLLHAIGHRALANRPTLKVCYVSSEVFTNELINAIRHQRTDDFRNRYRTIDILMIDDIQ 225 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L S KQ+V ++DRPP + L R+RSR +GG+ + D Sbjct: 226 FIAGKESTQEEFFHTFNALYQSGKQIVISSDRPPRLIPDLADRLRSRFEGGLLADIQPPD 285 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL I + + + + +V+ VAR + ++ REL+GA N++V + A + Sbjct: 286 LETRQAIL-----IEKGRELGVQMPSDVVEFVARRIESNIRELEGALNRIV---ALAQLT 337 Query: 389 TAEIADELLSHLVNTGETKKMR----IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 I L + G+ + +R E + V +H+ +S +L+ R R +V PRQ+ Sbjct: 338 HQPITLALAVEALREGDARAVREQLTPELVLHAVCQHFRVSLAELVGPGRRREIVLPRQI 397 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 AMYL + S EIG+R G RDHTTVLH V KVE+ L +D L+ +V Sbjct: 398 AMYLLREELGLSLVEIGQRLGGRDHTTVLHGVDKVEEQLRSDEQLRADV 446 >gi|331004666|ref|ZP_08328128.1| chromosomal replication initiator protein DnaA [Lachnospiraceae oral taxon 107 str. F0167] gi|330409593|gb|EGG89033.1| chromosomal replication initiator protein DnaA [Lachnospiraceae oral taxon 107 str. F0167] Length = 462 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 116/347 (33%), Positives = 202/347 (58%), Gaps = 8/347 (2%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD + F TF+ G SN +A A ++AE NP FI+ VGLGKTHL+ +IA Sbjct: 119 LDPLYTFDTFVVGKSNDLAHATAIAVAESPGSQNPGEHYNPFFIYGGVGLGKTHLMHSIA 178 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++ P+ ++Y+++E F+ + A++++ + RN+D+LLIDD+QF+ GK I Sbjct: 179 HYILEHNPDSIILYVSSEKFLNEYIDALKNSNLQEYRSKYRNVDVLLIDDIQFIGGKDAI 238 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E H N+L + KQ++ ++DRPP EL++L+ R+RSR GV+V + D+E R +IL Sbjct: 239 QEELFHTFNALYEQKKQIILSSDRPPMELKNLEERLRSRFAWGVAVEIFSPDFETRMAIL 298 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTAEIAD 394 + S++E NI+ EV+ +A + ++ R L+GA N+L + R + + ++A Sbjct: 299 R-----SKEERDGKNIDNEVIQFIATNIKSNIRMLEGALNKLYAMSRLNKNQEIDIDLAK 353 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L ++ K+ E I +VA H+NI+ +L + R V R + +YL + MT Sbjct: 354 SVLKDMITPDAPTKITSEYIATVVADHFNITVAELKAKGRKEPVATARHITVYLCRKMTN 413 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +IG+ GDRDH+T++++ + + + +D L + +E +K+ IS Sbjct: 414 DTQTKIGQFLGDRDHSTIVNSEDVITRRIVSDNELNQTIETIKKKIS 460 >gi|78184461|ref|YP_376896.1| chromosomal replication initiation protein [Synechococcus sp. CC9902] gi|123729943|sp|Q3AYH5|DNAA_SYNS9 RecName: Full=Chromosomal replication initiator protein DnaA gi|78168755|gb|ABB25852.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9902] Length = 462 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/470 (30%), Positives = 252/470 (53%), Gaps = 25/470 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++T V L++++ + ++ + S + + L P F ++ + L TI + Sbjct: 5 DELWTKVRKGLQDKLSKPTFETFIRPTGCSSFSNGELKLLAPNPFTSIRLREQLLPTIAE 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSI--TKLS-PINTNISKSPIILGKQTISP 152 + R V +L + ALP E A + ++ T +S P + P G++ P Sbjct: 65 MATSISGRSVQVTVLAET-ALPKSEFVADAAAVELTDVSEPRRESAPARPS--GQRRYLP 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF F+ G ++R+A AA ++AE + NPLFI VGLGKTHL Sbjct: 122 A----LNPRYVFGRFVVGQNSRMAHAAALAVAEAPGREF-----NPLFICGGVGLGKTHL 172 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+QF++ Sbjct: 173 MQAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQFIE 232 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ +QVV A+DRPPS++ L R+ SR Q G+ + D E Sbjct: 233 GKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSPDLET 292 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R +IL+ + E ++ + +++ ++A T++ REL+GA + V +FA I Sbjct: 293 RMAILQKK-----AEQERMALPRDLIQYIAGRFTSNIRELEGALTRAV---AFASITGLP 344 Query: 392 IADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E ++ +++ TG+ + + + V++ ++++ ++ S+ R R V + RQV MYL + Sbjct: 345 MTVESVAPMLDPTGQGVAVSPQQVIEKVSEVFDVTAEEMCSSTRRRAVSQARQVGMYLMR 404 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IG FG +DHTTV++A+ ++EK L +D L +V+ ++ L+ Sbjct: 405 QGTDLSLPRIGDTFGGKDHTTVMYAIEQIEKKLASDPKLAGQVQKVRDLL 454 >gi|81251068|gb|ABB69872.1| DNA replication initiator protein [Nitrosospira sp. GS832] Length = 475 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 240/463 (51%), Gaps = 38/463 (8%) Query: 55 YASWFQRLKF---HSVLHNIVHLSVPTNFLKAWIKNRYLETITKL----------FQEEH 101 + +W + L+ H+ + + P F+ W+K+ +L I ++ FQ + Sbjct: 24 FNTWIKPLRLEVSHNTHESTAVVIAPNRFVMQWVKDNFLSRIEQMAGLHFPQAIRFQLKL 83 Query: 102 SRIQGVEILVRSV-----ALPSVEKTASSPSI-TKLSPINTNISKSPIILGKQTISPVFG 155 + V+ VR+V ALPS + S + + P+ + K+ +P Sbjct: 84 ADPISVKTTVRAVENTDAALPSATPPSDSAAFGVPVVPVQKFAMDA---REKREKNP--- 137 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F ++F+ G +N++A A +AE Y NP FI+ VGLGKTHL+QA Sbjct: 138 SRLNPSFTLNSFVTGKANQLARAGAIQVAERPGTAY-----NPFFIYGGVGLGKTHLIQA 192 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N ++ +V Y+ +E ++ A + + K ++D+LLIDD+QF GK Sbjct: 193 IGNFVLEHNSTAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLDVLLIDDIQFFGGKN 252 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N+L+++ +QV+ D P E+ ++ R+ SR G+ V + + EMR + Sbjct: 253 RTQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWGLIVAVEPPELEMRVA 312 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++E V +A+ + ++ REL+GA +++ F L+ ++A Sbjct: 313 ILLKKALMEN-----IVLDENVAFFIAKHIRSNVRELEGALKRVLAYSRFTGHSLSLDLA 367 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + +++ IE+IQ+ VA +Y I ++ S +R R V RPRQ+AM +SK +T Sbjct: 368 REALKDLLAV-QNRQISIENIQKTVADYYKIKVAEMYSKKRSRIVARPRQMAMAISKELT 426 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 P S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 427 PLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAINRDFNAL 469 >gi|116075382|ref|ZP_01472642.1| chromosomal replication initiation protein [Synechococcus sp. RS9916] gi|116067579|gb|EAU73333.1| chromosomal replication initiation protein [Synechococcus sp. RS9916] Length = 469 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/472 (30%), Positives = 249/472 (52%), Gaps = 26/472 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V L+ + + +W + ++ S + L P +F W++ YL TIT+L Sbjct: 7 LWNKVQHALQGSLSKPTFETWLRPVRCSSFSDGELCLQAPNSFASNWLRKHYLSTITELA 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-------SPIILGKQTI 150 + R V + R T + + + SP QT Sbjct: 67 TDIIGRPVQVTVEARQEDQEGAASTPVQAAPAPAPVAMASDASASAVAVPSP----GQTR 122 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI VGLGKT Sbjct: 123 APRRLPGLNRRYVFNRFVVGPNSRMAHAAALAVAESPGREF-----NPLFICGGVGLGKT 177 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P+ RV Y++ E F AIR + +D R DL+L+DD+QF Sbjct: 178 HLMQAIGHYRLEIDPDARVSYVSTETFTNDLIVAIRKDGMQAFRDRYRATDLILVDDIQF 237 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D Sbjct: 238 IEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDL 297 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E K+++ +++ +++ T++ REL+GA + V +FA I Sbjct: 298 ETRMAILQKK-----AEQEKVSLPRDLIQYLSGRFTSNIRELEGALTRAV---AFASITG 349 Query: 390 AEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ +++ +G+ ++ + + V++ +++S +D+ S+ R RTV + RQV M+L Sbjct: 350 LPMTVESVAPMLDPSGQGVEVTPQQVIDKVSEVFDVSADDMRSSSRRRTVSQARQVGMFL 409 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + T S P IG FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 410 MRQGTDLSLPRIGETFGGKDHTTVMYAIEQVEKKLSSDPQLASQVQKVKDLL 461 >gi|293602695|ref|ZP_06685136.1| DNA-directed DNA replication initiator protein [Achromobacter piechaudii ATCC 43553] gi|292818886|gb|EFF77926.1| DNA-directed DNA replication initiator protein [Achromobacter piechaudii ATCC 43553] Length = 485 Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 121/327 (37%), Positives = 185/327 (56%), Gaps = 14/327 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L++ F F+ G +N++A AA +AE Y NPLF++ VGLGKTHL+ A Sbjct: 147 SRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY-----NPLFLYGGVGLGKTHLIHA 201 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I NA + +RV Y+ A+ ++ A + + K ++DLLLIDD+QF GK Sbjct: 202 IGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 261 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +++ KQ++ +D P EL +D R+ SR G++V + + EMR + Sbjct: 262 RTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVA 321 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP--ILTAEI 392 IL + + E + + EEV +A+ + ++ REL+GA +++ F +LT ++ Sbjct: 322 IL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDV 376 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L++ ++ +E+IQ+ VA Y I D+ S RR + PRQVAMYL+K + Sbjct: 377 CKEALKDLLSVS-NGQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKEL 435 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 436 TQKSLPEIGDLFGGRDHTTVLHAVRKI 462 >gi|116070875|ref|ZP_01468144.1| chromosomal replication initiation protein [Synechococcus sp. BL107] gi|116066280|gb|EAU72037.1| chromosomal replication initiation protein [Synechococcus sp. BL107] Length = 474 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 142/470 (30%), Positives = 251/470 (53%), Gaps = 25/470 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++T V +L++++ + ++ + S + L P F ++ + L TI + Sbjct: 17 DELWTKVRKQLQDKLSKPTFETFIRPTGCSSFSDGELKLLAPNPFTSIRLREQLLPTIAE 76 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN-TNISKSP--IILGKQTISP 152 + R V +L + A P E T T +P++ TN ++ P + + Sbjct: 77 MATSISGRAVQVTVLAET-AFPKAELT------TDAAPLDSTNAAEQPREAAPARPSGQR 129 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ R+VF F+ G ++R+A AA ++AE + NPLFI VGLGKTHL Sbjct: 130 RYLPGLNPRYVFGRFVVGQNSRMAHAAALAVAEAPGREF-----NPLFICGGVGLGKTHL 184 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+QF++ Sbjct: 185 MQAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQFIE 244 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ +QVV A+DRPPS++ L R+ SR Q G+ + D E Sbjct: 245 GKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSPDLET 304 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R +IL+ + E ++ + +++ ++A T++ REL+GA + V +FA I Sbjct: 305 RMAILQKK-----AEQERMALPRDLIQYIAGRFTSNIRELEGALTRAV---AFASITGLP 356 Query: 392 IADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E ++ +++ TG+ + + + V++ ++++ +++ S+ R R V + RQV MYL + Sbjct: 357 MTVESVAPMLDPTGQGVAVSPQQVIEKVSEVFDVTADEMCSSTRRRAVSQARQVGMYLMR 416 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IG FG +DHTTV++A+ ++EK L +D L V+ ++ L+ Sbjct: 417 QGTDLSLPRIGDTFGGKDHTTVMYAIEQIEKKLASDPKLAGLVQKVRDLL 466 >gi|237753474|ref|ZP_04583954.1| chromosomal replication initiator protein dnaA [Helicobacter winghamensis ATCC BAA-430] gi|229375741|gb|EEO25832.1| chromosomal replication initiator protein dnaA [Helicobacter winghamensis ATCC BAA-430] Length = 434 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 140/470 (29%), Positives = 245/470 (52%), Gaps = 43/470 (9%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETI 93 ES +V +LKN++ P + ++ +L ++ + V L+ P F+ +W+K +Y I Sbjct: 2 ESPLHLVLLQLKNELTPFEFDNYISQLSYNEKYSRDDRVVLNAPNVFVASWVKTKYSNKI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 LF E HS + EI+V V P+ +K + NI K Sbjct: 62 AHLF-EIHSGFKP-EIIVE-VLNPNKKKDNKA-----------NIRKQNT---------- 97 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ F F++FI G+SN A A+++A+ S Y NPL I+ + GLGKTHLL Sbjct: 98 -ASNLNPSFTFTSFIVGNSNTFAFNVAKAVAQNQSTSY-----NPLVIYGNTGLGKTHLL 151 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI NA+I N V+Y T+E F+ F IR+N ++ R D LLIDD+QFL G Sbjct: 152 NAIGNANIIVGKN--VIYTTSEQFLNDFLLHIRNNTMDRFREKYRACDYLLIDDIQFLSG 209 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K IQ EF H N L ++ KQ+V +DRPP ++ L+ R+++R G+ + + E + Sbjct: 210 KDQIQEEFFHTFNELKENHKQIVLTSDRPPKDMNGLEERLKTRFTSGLLADIQPPELETK 269 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTA 390 +I++ + + +++++ ++ +A + + RE++G +L F + I ++ Sbjct: 270 INIIRAKCELDG-----IHLSDSIINFIAANINDNIREIEGVLVKLNFSMNVTNIQEISL 324 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + ++L + + + + +E I VAK+YN+ +D+ S R + +V R++ +YL++ Sbjct: 325 DFVKDILKEYIKESK-ENIDMETIIETVAKYYNLKPSDIKSKSRSKNIVTARKIVIYLAR 383 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP S P + FG +DH+TV A++ ++ + + K +E +K I Sbjct: 384 TLTPNSMPYLANYFGMKDHSTVSKAMKSIQNEINENQNFKTIIEEIKNKI 433 >gi|307149946|ref|YP_003885330.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7822] gi|306980174|gb|ADN12055.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7822] Length = 454 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 139/476 (29%), Positives = 247/476 (51%), Gaps = 46/476 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ + ++T V RL++++ + +W K + + + F+ ++ YL Sbjct: 1 MELSPQDLWTQVLERLQSRLSRPAFETWITTAKVEQLTEKYLVICAANPFILNHLQKNYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVA--------LPSVEKTASSPSITKLSPINTNISKSP 142 + I + +E I G I ++ A + E +A PS T++ +P Sbjct: 61 QIIADVVEE----ILGYPIDIQLTAAQGENIAIIGETEMSAYHPS--------TSLGDNP 108 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 P+ L+ ++ FS F+ G +NR+A A ++AE + NPLF+ Sbjct: 109 --------KPI---KLNPKYTFSRFVVGPNNRLAHAATLAVAESPGREF-----NPLFLC 152 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAIA+ ++ P+ +V Y++ E F +AIR + + ++ R D+ Sbjct: 153 GGVGLGKTHLMQAIAHYRLEMYPDSKVFYVSTEQFTNDLIAAIRQDSLQSFREHYRTADI 212 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+QF++GK Q EF H N+L ++ KQVV A+DRPP ++ +L R+ SR G+ Sbjct: 213 LLVDDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKQIPTLQDRLISRFSMGLI 272 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + D E R +IL+ + E + + EV+ ++A T++ REL+GA + + Sbjct: 273 ADIQVPDLETRMAILQKK-----AEYENMRLPREVIEYIATHYTSNIRELEGALIRAITY 327 Query: 382 HSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + + + +T E +L+ + GE E I ++A+ +++S DL SN R R + Sbjct: 328 IAISGLSMTVENLAPVLNPPLERGEVSP---EVILNIIAETFHVSVEDLKSNSRRREISL 384 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 RQ+ MYL + T S P IG FG +DHTTV+++ K+ ++ + D+ L + + L Sbjct: 385 ARQIGMYLMRQHTELSLPRIGEEFGGKDHTTVMYSYDKINQLQKKDLELSQTLSQL 440 >gi|325265442|ref|ZP_08132165.1| DNA replication initiator protein, ATPase [Clostridium sp. D5] gi|324029300|gb|EGB90592.1| DNA replication initiator protein, ATPase [Clostridium sp. D5] Length = 456 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 119/371 (32%), Positives = 214/371 (57%), Gaps = 17/371 (4%) Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 K +I K++ + + L++++ F TF+ GS+N A A+ ++AE Y NPL Sbjct: 92 KENVIKNKKSNALFENANLNAKYTFDTFVVGSNNNFAHAASLAVAESPGEIY-----NPL 146 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALN-L 253 FI+ VGLGKTHL+ ++A+ ++ P+ +V+Y+T+E F +++ + A+ Sbjct: 147 FIYGGVGLGKTHLMHSVAHFILENDPSKKVLYVTSETFTNELIDSLKIGKNGNELAMTTF 206 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 ++ RN D+LLIDD+QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+ Sbjct: 207 REKYRNNDVLLIDDIQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARL 266 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 R+R + G+ + DYE R +IL+ + + E + +I +EVL ++A + ++ REL+ Sbjct: 267 RTRFEWGLIADISSPDYETRMAILRKKEELDGLE--RYHIPDEVLQYIANNIKSNIRELE 324 Query: 373 GAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 G+ N+L+ + PI +A E L +++ + + + E + +V++H+NI ++L Sbjct: 325 GSLNKLIALSNLEKKPI-DIPLAAEALKDMISPDDNRTITPELVIDVVSEHFNIPVSELK 383 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 +R +V PRQ+ MYL + MT + IG G +DH +V H V+K+ + D L Sbjct: 384 GKKRNAEIVLPRQIVMYLCRTMTDTALKTIGIILGGKDHASVSHGVKKIAHDITVDEALN 443 Query: 491 KEVELLKRLIS 501 V ++K+ I+ Sbjct: 444 NTVNIIKKKIN 454 >gi|148651819|ref|YP_001278912.1| chromosomal replication initiator protein DnaA [Psychrobacter sp. PRwf-1] gi|148570903|gb|ABQ92962.1| chromosomal replication initiator protein DnaA [Psychrobacter sp. PRwf-1] Length = 470 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 136/470 (28%), Positives = 243/470 (51%), Gaps = 40/470 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ Q+ + + W + L H ++ + + L P + + ++ + I ++ ++HS + Sbjct: 15 LRYQLKENEFTMWLRPLSAH-IIGDKLELLAPNQYFVSHVQQHHFAAI-EVLAKQHSNGE 72 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPIN-TNISKSPIIL---------------GKQT 149 +++++ VE + S TK + P+++ Q Sbjct: 73 IRQVVIQ------VESSVHSGGQTKAGHTTLASAQNGPVVMSAQQNLQTQNEEDADAAQM 126 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S S ++ F F TF+ G SN +A A Q + + S R NPLF++ GLGK Sbjct: 127 ASDKSLSYINPYFTFETFVSGKSNMLAYKACQELGKKQSQN----RHNPLFLYGPSGLGK 182 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ ++A+ +K Y ++E F+ + A+R+ K ++ +DLL+IDD+ Sbjct: 183 THLMHSVAHRYLKIGKTF--YYFSSEKFINQLVYALRNQKIEEFKRKIKRVDLLIIDDVH 240 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L GK +EF L + KQV+ A+DR PS++ D R RSR G++V + + Sbjct: 241 VLAGKNKSSNEFLSLFADFMVEGKQVILASDRHPSQMTEFDERFRSRFSSGLAVAIEPPE 300 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--P 386 E R IL+ + +S + PK E + +A+ V ++ R L+GA NQ+V + P Sbjct: 301 METRMQILQKKAHLSGVDLPK-----ECALFIAQNVVSNVRRLEGALNQVVATANLTGNP 355 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 I ++ L ++ ++ + +++I+++VA++Y++S DL+S +R R++ RPRQ+AM Sbjct: 356 I-DLDMVQYALKDVIAI-RSQAVSMDNIRKVVAEYYDVSVKDLMSKKRTRSIARPRQIAM 413 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 L++ +T SFP+IG+ FG RDHTTV+HA K+ ++ D L KE + L Sbjct: 414 ALARELTKDSFPDIGQSFGGRDHTTVMHACDKIAQLRSEDPVLDKEYKAL 463 >gi|225025478|ref|ZP_03714670.1| hypothetical protein EIKCOROL_02378 [Eikenella corrodens ATCC 23834] gi|224941762|gb|EEG22971.1| hypothetical protein EIKCOROL_02378 [Eikenella corrodens ATCC 23834] Length = 510 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 118/342 (34%), Positives = 194/342 (56%), Gaps = 15/342 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A+ AA+SIAE Y NP F++ S GLGKTHL QA+ Sbjct: 175 LSPEYTFDTLVEGKGNRLAVAAARSIAENPGKNY-----NPFFLYGSTGLGKTHLAQAVG 229 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N ++ +P +V Y+ AE F+ A R++ + + D L+IDD+QF++GK Sbjct: 230 NELLRLKPEAKVYYMHAEDFVRGMIQAFRNHAHDAFRQQYKPYDFLIIDDIQFIKGKDRS 289 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF HL N KQ++ D P++++ +D R++SR G+++ L + EMR IL Sbjct: 290 MEEFFHLYNHCHHHKKQIILTCDVLPTKIDDMDDRLKSRFSWGLTLELEPPELEMRVEIL 349 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + + + + + EE +A + ++ REL+GAF ++ R F PI E+A Sbjct: 350 QKK-----ADSVGVELKEEAAFFIATHIRSNVRELEGAFKRVEARSRFEHKPI-DVELAT 403 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L +V G K + + I VAK+Y I DL+ +R +++VRPR +A+ L++ +T Sbjct: 404 EALQDIV-AGNFKPINLPLIMDAVAKYYGIRTADLIGKKRAQSIVRPRHLAIKLARELTT 462 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S+ +IG+ FG RDH+TVL++V+K +++ + D + ++ E L Sbjct: 463 HSYEDIGKAFGGRDHSTVLNSVKKADELRQEDAEIAQDYEKL 504 >gi|193213721|ref|YP_001994920.1| chromosomal replication initiation protein [Chloroherpeton thalassium ATCC 35110] gi|193087198|gb|ACF12473.1| chromosomal replication initiator protein DnaA [Chloroherpeton thalassium ATCC 35110] Length = 496 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 146/490 (29%), Positives = 250/490 (51%), Gaps = 44/490 (8%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 K+CL++ + + + S + +WF+ + + + + VP+ F I+ Sbjct: 28 KKCLDIIRDGLHNLQS-----------FKTWFEPIVPLKLSGQELTIQVPSQFFYEMIEE 76 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS--PIIL 145 Y + + E + G +R L + A +P + ++ + + P ++ Sbjct: 77 NYYSLLKRALME----VMGTGAKLRYSVLVQAAQ-AETPVVARIPEKKGKHTPAALPKVI 131 Query: 146 ----GKQTISPV---------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 GKQT F S L+ ++ F F++G N +A AA+S++E Sbjct: 132 SHANGKQTKEAQDLFANNVHRFESYLNPKYRFENFVKGDCNDLAHAAAKSVSETPGKS-- 189 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPL I+ VGLGKTHL+QAI N + + V+Y+++E F F +AI++N A Sbjct: 190 --SFNPLVIYGGVGLGKTHLIQAIGNHARENNKAKFVMYVSSEKFTIEFVNAIQNNQAHE 247 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 RN+DLL+IDD+QF + K Q E H+ N+L + KQ+V ++DRP EL+ ++ R Sbjct: 248 FSAFYRNVDLLIIDDIQFFERKEKTQEEIFHIFNTLHQANKQIVLSSDRPIKELKGIEER 307 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + SR Q G++ L L DYE R +IL+ +L E+ ++E ++ +A +T++ REL Sbjct: 308 LLSRFQWGLTADLQLPDYETRRAILQRKL-----EENSATLDESIIDFIATNMTSNIREL 362 Query: 372 DGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +G +L+ S A + +A +L V ++ + IE +++ V +++ IS ND+ Sbjct: 363 EGCLVKLLATASLNAKSIDLPLAKNILRDSVRE-RSQTVTIEMVEKAVCEYFGISANDIK 421 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 R + + RQ+AMY +K T SF IG FG RDH+TV+HAV ++K + ++ Sbjct: 422 GKSRKKEIAFARQMAMYSAKKWTKSSFKTIGLHFGGRDHSTVIHAVNAIDKNADRSEEVR 481 Query: 491 KEV-ELLKRL 499 + EL KRL Sbjct: 482 NTIEELHKRL 491 >gi|38232643|ref|NP_938410.1| chromosomal replication initiation protein [Corynebacterium diphtheriae NCTC 13129] gi|61212619|sp|Q6NKL7|DNAA_CORDI RecName: Full=Chromosomal replication initiator protein DnaA gi|38198901|emb|CAE48512.1| chromosomal replication initiator protein [Corynebacterium diphtheriae] Length = 552 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/346 (35%), Positives = 197/346 (56%), Gaps = 14/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F T++ SN++ +AA ++AE + Y NPLFI GLGKTHL+ AI Sbjct: 212 LNPRYTFDTYVVSDSNKLPWSAAWAVAEKPARAY-----NPLFIWGDSGLGKTHLMHAIG 266 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N + + P L+V Y+++E F + +++RD+ K R++D+L++DD+QFLQGK Sbjct: 267 NYAQELDPKLKVKYVSSEEFTNDYINSVRDDRQEAFKRRYRDLDILMVDDIQFLQGKEGT 326 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R Q G+ + D E R +IL Sbjct: 327 QEEFFHTFNALQQADKQIVLSSDRPPKQLTTLEDRLRTRFQSGLIADIYPPDLETRIAIL 386 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 N+ + + + +VL +A S REL+GAF ++ S API A A Sbjct: 387 LNKASAE-----GITADRDVLELIASRFNASIRELEGAFIRVSAYASLNEAPINMA-TAQ 440 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L ++ ++ I + A++++I + L + + R+V PRQ+AMYL + +T Sbjct: 441 EALRDMMPEQADIEITAGMIMSVTAEYFHIDVDTLKGSGKSRSVAHPRQLAMYLCRELTD 500 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG FG +DHTTV++A RK+ K + E++ L + I Sbjct: 501 LSLPKIGEHFGGKDHTTVMYAYRKIGKEITEKRDTYDEIQQLTQQI 546 >gi|206603335|gb|EDZ39815.1| Chromosomal replication initiator protein (DnaA) ORIGIN [Leptospirillum sp. Group II '5-way CG'] Length = 465 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/437 (30%), Positives = 245/437 (56%), Gaps = 27/437 (6%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ-GVEILVRSVALPS-----VEKTASSPS 127 L V ++F++ ++NRY + + F+E + ++LV+ +P V + Sbjct: 46 LFVGSSFIQRLVQNRYYKDLLTAFREVTRNPEISFDVLVQPENVPRKKRKVVRNSGPEGG 105 Query: 128 ITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 ++ P+ P+ LG+ P + S L+ R+ F ++ G N+ A AA +IA Sbjct: 106 LSPGKPV-------PLPLGEDR-HPAWNSNLNPRYFFENYVVGVCNQFAHAAAFAIANNP 157 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 S Y NP ++ SVGLGKTHL+ AI N + P+L+V+Y+T E F+ SAI+ Sbjct: 158 SKAY-----NPFYLFGSVGLGKTHLVSAIGNCMVALYPSLKVLYITTESFLNEMVSAIKF 212 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 N ++ R ID+L++DD+QFL GK Q E + N+L ++ KQ++ ++D P+++ Sbjct: 213 NKMNEFRERYRKIDVLIMDDVQFLSGKERTQEELFYTFNALYENGKQIILSSDCMPNDIP 272 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 +L+ R++SR G+ + + D+E + ILK ++A K+++ +V+ +A ++ + Sbjct: 273 TLEGRLKSRFGWGLIADIQIPDFETKVEILKGKMA-----QEKVDLPMDVVYFLANSIKS 327 Query: 367 SGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 + REL+GA +L + + +T E+A LLS L+ + + ++ I + VA ++ + Sbjct: 328 NIRELEGAMIRLGAYGNLMGKPITIEVARNLLSDLMPLSR-ESISVDRILQEVADYFKVL 386 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 ++ S +R +T+V R VA+YL + +T +S+PEIGR G RDH+T +++ + VE+ LE+ Sbjct: 387 PKEIRSKKRHKTLVTARHVAVYLIRELTQKSYPEIGRELGGRDHSTAIYSFKMVEEKLES 446 Query: 486 DITLKKEVELLKRLISE 502 D L ++ LK+ + + Sbjct: 447 DPALTSDIVYLKKKLEQ 463 >gi|256831256|ref|YP_003159983.1| chromosomal replication initiator protein DnaA [Jonesia denitrificans DSM 20603] gi|256684787|gb|ACV07680.1| chromosomal replication initiator protein DnaA [Jonesia denitrificans DSM 20603] Length = 476 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 143/415 (34%), Positives = 230/415 (55%), Gaps = 27/415 (6%) Query: 99 EEHSRIQGVEILVRSVALPSVEKTA--SSPSITKLSPINTNISKSP-IILGKQTISPVF- 154 E SR G I + P +E+++ S+P+ + + + +P ++ ++ + P Sbjct: 69 EAISRAMGKPITIAVTVNPDLERSSVVSAPATSPHTQDSAPTPDAPRSLVDREPVVPKSL 128 Query: 155 --GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G L+ +++F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHL Sbjct: 129 DEGHRLNPKYIFETFVIGSSNRFAHAAAVAVAEAPAKAY-----NPLFIYGGSGLGKTHL 183 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N ++ P+ +V Y+ +E F F ++IRD A + R +D LLIDD+QFLQ Sbjct: 184 LHAIGNYALNLYPSAKVKYVNSEEFTNDFINSIRDEKAGAFQRRHREVDFLLIDDIQFLQ 243 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK EF H N+L ++ KQVV +D PP +L + R+RSR + G+ + D E Sbjct: 244 GKEATMEEFFHTFNALHNANKQVVITSDLPPKQLAGFEDRLRSRFEWGLITDVQPPDLET 303 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+ + A +LN ++VL ++A ++++ REL+GA L+ +FA + Sbjct: 304 RIAILRKKAA-----GERLNAPDDVLEYIASRISSNIRELEGA---LIRVTAFANLNRQP 355 Query: 388 LTAEIADELLSHLV--NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + ++A+ +L L+ + GE ++ + A ++ ++ DL R R +V RQ+A Sbjct: 356 VDRQLAEIVLKDLITDDDGEGAQITASSVIAQTAAYFGLTIEDLCGASRSRVLVTARQIA 415 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 MYL + +T S P+IG +FG RDHTTV+HA RK+ E+M E + EL R+ Sbjct: 416 MYLCRELTDLSLPKIGAQFGGRDHTTVMHANRKIAEQMAERRSIYNQVTELTSRI 470 >gi|225848588|ref|YP_002728751.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644495|gb|ACN99545.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium azorense Az-Fu1] Length = 442 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 137/468 (29%), Positives = 234/468 (50%), Gaps = 38/468 (8%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+ I+ V + LK +V + Y S L + + N +++ P N K WI LE Sbjct: 5 EIFKNKIWMNVLADLKEKVDENTY-SLLSGLDYVELKENSLYIYTPDNVYKTWILADLLE 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 IT ++ G ++ ++ ++L ++K + G T++ Sbjct: 64 DITL----SAKKVIGQDVNIQVISLKEIKKEEQK-------------REDENFYGYLTLN 106 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P +F F + G+ N+VA + ++AE + NPLFI+ VGLGKTH Sbjct: 107 P--------KFTFKNLVIGNHNKVAYQSCIAVAENPGKIF-----NPLFIYGDVGLGKTH 153 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 +L A A +KR N +++Y TA+ F S I+ L + +++DLLL+DD+QFL Sbjct: 154 MLHATAYHLLKRNQNAKIIYTTADTFASEMFSYIQKGMILEFRKRYKDVDLLLMDDIQFL 213 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H+ N L + KQ++ ++D+PP+ L+ ++ R+ SR G+ V + D E Sbjct: 214 VGKERTQIEFYHIFNILYTAGKQIILSSDQPPNSLKGIEKRLISRFNSGLIVEITKPDLE 273 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILT 389 + +I+ + + E P+ EV + + + V +S REL+GA +L + L Sbjct: 274 TKVNIINKKASEYGIEIPR-----EVAIFLGKIVNSSVRELEGAVKRLKAYCDIMGKPLN 328 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A +L +V E K + ++ I V ++ I + DLLS+++ + +V RQ+AMYLS Sbjct: 329 LEVAKTVLKDVVELQEIKSISVDSIIDEVCSYFKIDKKDLLSDKKNKNLVMARQIAMYLS 388 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 K +T + F ++H+T++ A KVE+ + D K V+ LK Sbjct: 389 KTLTEEPLSSLSTYFKKKNHSTIISACNKVEETMNKDRKFKLIVDFLK 436 >gi|282853039|ref|ZP_06262376.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J139] gi|282582492|gb|EFB87872.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J139] Length = 500 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/340 (37%), Positives = 196/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLG Sbjct: 154 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLG 208 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 209 KTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 268 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 269 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 328 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 329 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 380 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 381 NQQSVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 440 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG F +DHTTV+HA RK+ ++ Sbjct: 441 IAMYLCRELTDLSLPKIGAEFSGKDHTTVMHADRKIRALM 480 >gi|225020863|ref|ZP_03710055.1| hypothetical protein CORMATOL_00871 [Corynebacterium matruchotii ATCC 33806] gi|305681620|ref|ZP_07404426.1| chromosomal replication initiator protein DnaA [Corynebacterium matruchotii ATCC 14266] gi|224946345|gb|EEG27554.1| hypothetical protein CORMATOL_00871 [Corynebacterium matruchotii ATCC 33806] gi|305658780|gb|EFM48281.1| chromosomal replication initiator protein DnaA [Corynebacterium matruchotii ATCC 14266] Length = 594 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 120/355 (33%), Positives = 201/355 (56%), Gaps = 19/355 (5%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P L+ R+ F T++ SN++ +AA ++AE + Y NPLF+ GLGKT Sbjct: 248 NPAQDDSLNPRYTFDTYVVSDSNKLPTSAAIAVAEKPARAY-----NPLFVWGDSGLGKT 302 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI N + + PNLR+ Y+++E F + +++RD+ + K RN+D+L++DD+QF Sbjct: 303 HLMHAIGNYAQQLDPNLRIKYVSSEQFTNDYINSVRDDRQESFKRRYRNLDILMVDDIQF 362 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQGK Q EF H N+L KQ+V ++DRPP +L +L+ R+R+R Q G+ + D Sbjct: 363 LQGKEGTQEEFFHTFNALQQGGKQIVLSSDRPPKQLTTLEDRLRTRFQSGLIADIYPPDL 422 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL + + E ++ + +VL +A ++S REL+GAF ++ ++A + Sbjct: 423 ETRIAIL-----MKKAEAEQIVASRDVLELIASQFSSSIRELEGAFIRV---SAWASLNN 474 Query: 390 AEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +I A++ L L+ ++ + I M A+ + + L + R + RQ+A Sbjct: 475 QQINLKTAEQALEDLMPEHSVLEVTTDTIMAMTAEFFGFTIAQLSGTSKSRPITHARQIA 534 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + +T S P++G RFG RDHTTV+H+ RK+ K L E++ + +I Sbjct: 535 MYLCRELTELSLPKVGERFG-RDHTTVMHSERKIRKELAEKRDTYDEIQKITTMI 588 >gi|88807751|ref|ZP_01123263.1| chromosomal replication initiation protein [Synechococcus sp. WH 7805] gi|88788965|gb|EAR20120.1| chromosomal replication initiation protein [Synechococcus sp. WH 7805] Length = 464 Score = 208 bits (530), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 144/475 (30%), Positives = 255/475 (53%), Gaps = 24/475 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +++ +++ V L++ + + +W + + + + L P +F W++ Y Sbjct: 1 MDLTGSELWSKVQQTLQSNLSKPTFETWIRPAQCSAFTDGTLTLLAPNSFASNWLRKNYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII---LGK 147 TI + E I G +LV V VE SP+ ++ + + + SP L K Sbjct: 61 GTIADVAGE----IVGRPVLVM-VEARDVEPRGGSPN-SQTTAVTAESAPSPPTVEALPK 114 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + +P L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI VGL Sbjct: 115 ASKAPRRLPGLNMRYVFNRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGGVGL 169 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD Sbjct: 170 GKTHLMQAIGHYRLEIDPEARVFYVSTESFTNDLILAIRRDGMQAFRDRYRAADLILVDD 229 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + Sbjct: 230 IQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQA 289 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ + E ++ + +++ +++ T++ REL+GA + V +FA Sbjct: 290 PDLETRMAILQKK-----AEQERVALPRDLIQYISGRFTSNIRELEGALTRAV---AFAS 341 Query: 387 ILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 I + E ++ +++ +G+ ++ + + V++ + +S +D+ S+ R R V + RQV Sbjct: 342 ITGLPMTVESVAPMLDPSGQGVEVTPQQVIDKVSEVFGVSCDDMRSSSRRRAVSQARQVG 401 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M+L + T S P IG FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 402 MFLMRQGTGLSLPRIGDTFGGKDHTTVMYAIEQVEKKLSSDPQLASQVQKVKDLL 456 >gi|315441697|ref|YP_004074576.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. Spyr1] gi|315260000|gb|ADT96741.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. Spyr1] Length = 492 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 140/445 (31%), Positives = 239/445 (53%), Gaps = 40/445 (8%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W + ++ + LSVPT F++ I+ E I + Q VE+ VR +A Sbjct: 39 AWLKLVRPLVITEGFALLSVPTPFVQNEIERHLREPIVAALSRQLG--QRVELGVR-IAD 95 Query: 117 PSVEKTASSPSITKLSPINTNISK--------------SPIILGKQTISPVFGS---PLD 159 P+ + ++T SP+ + + P + S S L+ Sbjct: 96 PAADDVNDGAAVTA-SPVPADTDEVDDDLAARASAEESWPSYFNRAKTSAEDDSLSVNLN 154 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 R+ F TF+ G+SNR A A+ +IAE + Y NPLFI GLGKTHLL A N Sbjct: 155 RRYTFETFVIGASNRFAHAASLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNY 209 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 + + P +RV Y++ E F F +++RD+ + K + R+ID+LL+DD+QF++GK IQ Sbjct: 210 AQRLFPGMRVKYVSTEEFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGIQE 269 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ Sbjct: 270 EFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK 329 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIAD 394 + + +L++ ++VL +A + + REL+GA L+ +FA + + +A+ Sbjct: 330 KAQMD-----RLDVPDDVLELIASRIERNIRELEGA---LIRVTAFASLNKTSIDKSLAE 381 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L L++ T ++ I A+++ S ++L + R + + RQ+AMYL + +T Sbjct: 382 IVLRDLISDPGTMQISTAAIMAATAEYFETSVDELRGPGKTRALAQSRQIAMYLCRELTD 441 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKV 479 S P+IG+ FG RDHTTV++A +K+ Sbjct: 442 LSLPKIGQAFG-RDHTTVMYAEKKI 465 >gi|148244170|ref|YP_001218864.1| chromosomal replication initiator protein DnaA [Candidatus Vesicomyosocius okutanii HA] gi|146325997|dbj|BAF61140.1| chromosomal replication initiator protein DnaA [Candidatus Vesicomyosocius okutanii HA] Length = 430 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 116/346 (33%), Positives = 203/346 (58%), Gaps = 13/346 (3%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PL + F+ + G++N++A A + IAE T NP I+ GLGKTHL+QA Sbjct: 86 TPLFEDYTFNNLVLGNANQMAYGATKQIAE----NIKTSPYNPFIIYGKSGLGKTHLMQA 141 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + + ++ PN++++Y+ F+ S++R N N+K+ ++ DLLL+DD+ + GK Sbjct: 142 AGHLAKEKNPNIKIIYVPLMDFVRNITSSLRHNTIENIKNFYQSTDLLLVDDIHLIAGKE 201 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H+ N L KQ++ D+PP ++SL+ R+++R G+++ L + EMR + Sbjct: 202 KSQEEFFHIFNFLFSGKKQIIFTCDQPPKNIKSLEDRLKTRFSQGLNLHLTPPELEMRAA 261 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 IL L SQ + +N+ E+ + +A + ++ R+L+GA +L F+ I ++ Sbjct: 262 IL---LKKSQNKRININLTEDTALFIASHIASNIRDLEGALLKLKAFVDFSKINHSFISK 318 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 EI + L L+ + K + I DIQ+ VAKHY ++ +DL S R + V RQ+AM++ Sbjct: 319 EIIESALGDLIKP-QIKNIDINDIQKEVAKHYALTISDLSSKSRKQHTVLARQMAMFICY 377 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 ++ S +IG+ FG+RDH+TVLHA++K+++ +I +K + EL+ Sbjct: 378 ELSSLSLTKIGKHFGNRDHSTVLHAIKKIKEKHIENIEIKNDYELI 423 >gi|313835170|gb|EFS72884.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA2] gi|314929146|gb|EFS92977.1| replication initiator protein DnaA [Propionibacterium acnes HL044PA1] gi|314970905|gb|EFT15003.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA3] gi|328905785|gb|EGG25561.1| chromosomal replication initiator protein DnaA [Propionibacterium sp. P08] Length = 500 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/329 (37%), Positives = 193/329 (58%), Gaps = 14/329 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGKTHLL AI Sbjct: 163 LNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGKTHLLHAIG 217 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + N++V Y++ E F +AI N + S R++D+LL+DD+QFL+ K+ Sbjct: 218 RYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTREFRRSYRDVDVLLVDDIQFLESKIQT 277 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D E R +IL Sbjct: 278 QEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPDLETRIAIL 337 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + ++A K+ + +VL +A + T+ REL+GA ++ S P+ T+ +A+ Sbjct: 338 RRKVAAE-----KITVEPDVLEFIASRIHTNIRELEGALIRVTAFASLNQQPVDTS-LAE 391 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L L+ G + E I A +++IS +DLL R +T+V RQ+AMYL + +T Sbjct: 392 VVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMYLCRELTD 451 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 452 LSLPKIGAEFGGKDHTTVMHADRKIRALM 480 >gi|87302489|ref|ZP_01085306.1| chromosomal replication initiation protein [Synechococcus sp. WH 5701] gi|87282833|gb|EAQ74790.1| chromosomal replication initiation protein [Synechococcus sp. WH 5701] Length = 484 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 139/474 (29%), Positives = 241/474 (50%), Gaps = 30/474 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V L+ + + +W + + + L P +F W++ YL I + + Sbjct: 18 VQEALQANLSKPTFETWIRPARCTGYADGQLQLEAPNSFASGWLRKNYLVMIAAVATDLA 77 Query: 102 SRIQGVEILVRSV---------ALPSVEKTASSPSITKLSPIN----TNISKSPIILGKQ 148 VE+ +V + P+ A+ ++ SP T P G+ Sbjct: 78 GHAIQVEVGTAAVQELDGSLNGSTPAERPGAAQKTVAGASPGEVLRATAGPAGPTASGET 137 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P G L+ R+VF+ F+ G ++R+A AA ++AE + NPLF+ VGLG Sbjct: 138 PRRPAPG--LNPRYVFNRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFLCGGVGLG 190 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+ Sbjct: 191 KTHLMQAIGHYRLEIDPEARVFYVSTETFTNDLIQAIRKDGMQKFRDRYRAADLILVDDI 250 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + Sbjct: 251 QFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAP 310 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL + E ++ + +++ ++A T++ REL+GA + V +FA I Sbjct: 311 DLETRMAILHKK-----AEQERMALPRDLIQYLAGRFTSNIRELEGALTRAV---AFASI 362 Query: 388 LTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + E ++ +++ G ++ + + VA+ + +S ++ S+ R R V + RQV M Sbjct: 363 TGLPMTVESVAPMLDPVGNEVQVTPQQVVEKVAEVFGVSGEEMRSSSRKRAVSQARQVGM 422 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL + T S P IG FG +DH+TV++AV ++EK L D +L ++++ ++ L+ Sbjct: 423 YLLRQSTDLSLPRIGDVFGGKDHSTVMYAVEQIEKKLAIDPSLARQLQQVRDLL 476 >gi|62184989|ref|YP_219774.1| chromosomal replication initiation protein [Chlamydophila abortus S26/3] gi|62148056|emb|CAH63809.1| chromosomal replication initiator protein [Chlamydophila abortus S26/3] Length = 450 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 139/457 (30%), Positives = 231/457 (50%), Gaps = 27/457 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K + + +W ++ + L VP F++ ++ + Y + + + Sbjct: 17 VKTRCSKTAFENWISPIQIIEETQEKIRLEVPNIFVQNYLLDNYKQDLCSFVPLDAQGEP 76 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E +V + + A P + +PI T S F L++ + F Sbjct: 77 ALEFVVAEIKKAPPQPVA--PREQQETPIETFEE-----------SKDFELKLNTAYRFD 123 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ + + Sbjct: 124 NFIEGPSNQFVKSAAVGIAGRPGRSY-----NPLFIHGGVGLGKTHLLHAVGHYVREHHK 178 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLL 284 NLRV +T E F+ +R +K+ R++DLLL+DD+QFLQ + + EFC+ Sbjct: 179 NLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTF 238 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 +L++ KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +IL+++ Sbjct: 239 ETLINLNKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETRVAILQHK----- 292 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNT 403 E L+I E+ ++A + + R+L+GA N+L + F LT I + L L + Sbjct: 293 AEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTETIVRDTLKELFRS 352 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 +K+ +E I + VA + + +L N R + +V RQVAMYL+K + S IG Sbjct: 353 PSKQKVSVESILKSVATVFQVKLQELKGNSRSKELVLARQVAMYLAKTLITDSLVAIGSA 412 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG + H+TVL+A + +E+ +E D TL +++ L K I Sbjct: 413 FG-KTHSTVLYACKTIEQKIEKDETLTRQISLCKNHI 448 >gi|16752614|ref|NP_444878.1| chromosomal replication initiation protein [Chlamydophila pneumoniae AR39] gi|7189257|gb|AAF38184.1| chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae AR39] Length = 467 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 195/349 (55%), Gaps = 14/349 (4%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F L+ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL Sbjct: 129 FELKLNLSYRFDNFIEGPSNQFVKSAAVGIAGKPGRSY-----NPLFIHGGVGLGKTHLL 183 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ + + NLR+ +T E F+ ++ +K+ R++DLLL+DD+QFLQ Sbjct: 184 HAVGHYVREHHKNLRIHCITTEAFINDLVYHLKSKSVDKMKNFYRSLDLLLVDDIQFLQN 243 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 + + EFC+ +L++ +KQ+V +D+PPS+L+ L RI +R++ G+ +G+ D E R Sbjct: 244 RQNFEEEFCNTFETLINLSKQIVITSDKPPSQLK-LSERIIARMEWGLVAHVGIPDLETR 302 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAE 391 +IL+++ E L I E+ ++A + + R+L+GA N+L + F LT Sbjct: 303 VAILQHK-----AEQKGLLIPNEMAFYIADHIYGNVRQLEGAINKLTAYCRLFGKSLTET 357 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L + +K+ +E I + VA + + NDL N R + +V RQ+AMYL+K Sbjct: 358 TVRETLKELFRSPTKQKISVETILKSVATVFQVKLNDLKGNSRSKDLVLARQIAMYLAKT 417 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + S IG FG + H+TVL+A + +E L+ D TLK++V L K I Sbjct: 418 LITDSLVAIGAAFG-KTHSTVLYACKTIEHKLQNDETLKRQVNLCKNHI 465 >gi|87123971|ref|ZP_01079821.1| chromosomal replication initiator protein DnaA [Synechococcus sp. RS9917] gi|86168540|gb|EAQ69797.1| chromosomal replication initiator protein DnaA [Synechococcus sp. RS9917] Length = 466 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 136/465 (29%), Positives = 246/465 (52%), Gaps = 16/465 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V L++ + + +W + + + + L P +F W++ Y+ TI ++ Sbjct: 8 LWNKVQHALQSSLSKPTFETWIRPARCSAFADGELTLQAPNSFASNWLRKNYVATIAEVA 67 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + H V +L R A + A S + N + + Sbjct: 68 SDLHGAPVTVTVLAREEAAADPPQAAQSQAAGVAPAATANPTTTTTAAASGAAPRRLPG- 126 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI VGLGKTHL+QAI Sbjct: 127 LNMRYVFNRFVVGPNSRMAHAAALAVAESPGREF-----NPLFICGGVGLGKTHLMQAIG 181 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++ P+ RV Y++ E F AIR + +D R DL+L+DD+QF++GK Sbjct: 182 HYRLEIDPDARVSYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLILVDDIQFIEGKEYT 241 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D E R +IL Sbjct: 242 QEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMAIL 301 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + E ++ + +++ +++ T++ REL+GA + V +FA I + E Sbjct: 302 QKK-----AEQERVTLPRDLIQYISGRFTSNIRELEGALTRAV---AFASITGLPMTVES 353 Query: 397 LSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ +++ +G+ ++ + + V++ +++S +D+LS+ R R V + RQV M+L + T Sbjct: 354 VAPMLDPSGQGVEVTPQQVIEKVSEVFDVSADDMLSSSRRRAVSQARQVGMFLMRQGTGL 413 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG +DHTTV++A+ +VEK L +D L +V+ ++ ++ Sbjct: 414 SLPRIGETFGGKDHTTVMYAIEQVEKKLASDPQLASQVQRVRYML 458 >gi|29840131|ref|NP_829237.1| chromosomal replication initiation protein [Chlamydophila caviae GPIC] gi|33301062|sp|Q823P0|DNAA1_CHLCV RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|29834479|gb|AAP05115.1| chromosomal replication initiator protein DnaA [Chlamydophila caviae GPIC] Length = 450 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 140/457 (30%), Positives = 232/457 (50%), Gaps = 27/457 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K + + +W ++ + L VP F++ ++ + Y + + + Sbjct: 17 VKTRCSKTAFENWISPIQIIEETQEKIRLEVPNIFVQNYLLDNYKQDLCSFVPLDAQGEP 76 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E +V + K A + I P +SP ++ S F L++ + F Sbjct: 77 ALEFVVAEI------KKAPAQPIAPREP-----QESPAETFEE--SKDFELKLNAAYRFD 123 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ + + Sbjct: 124 NFIEGPSNQFVKSAAVGIAGRPGRSY-----NPLFIHGGVGLGKTHLLHAVGHYVREHHK 178 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLL 284 NLRV +T E F+ +R +K+ R++DLLL+DD+QFLQ + + EFC+ Sbjct: 179 NLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTF 238 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 +L++ KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +IL+++ Sbjct: 239 ETLINLNKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETRVAILQHK----- 292 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNT 403 E L+I E+ ++A + + R+L+GA N+L + F LT I + L L + Sbjct: 293 AEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTESIVRDTLRELFRS 352 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 +K+ +E I + VA + + DL R + +V RQVAMYL+K + S IG Sbjct: 353 PSKQKVSVESILKSVATVFQVKLQDLKGTSRSKELVLARQVAMYLAKTLITDSLVAIGSA 412 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG + H+TVL+A + +E+ +E D TL +++ L K I Sbjct: 413 FG-KTHSTVLYACKTIEQKIEKDETLTRQISLCKNHI 448 >gi|240172091|ref|ZP_04750750.1| chromosomal replication initiation protein [Mycobacterium kansasii ATCC 12478] Length = 514 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/334 (36%), Positives = 201/334 (60%), Gaps = 15/334 (4%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T++ G+ L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI GLG Sbjct: 166 TVAATGGTSLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLG 220 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+ Sbjct: 221 KTHLLHAAGNYTQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDI 280 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + Sbjct: 281 QFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPP 340 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--A 385 + E R +IL+ + +Q E +L + ++VL +A ++ + REL+GA ++ S Sbjct: 341 ELETRIAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKT 395 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 PI A +A+ +L L+ ++ I A++++ + +L + R++ + RQ+A Sbjct: 396 PIDKA-LAEIVLRDLIADATAMQISAATIMAATAEYFDTTVEELRGPGKTRSLAQSRQIA 454 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 MYL + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 455 MYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKI 487 >gi|294505817|ref|YP_003569875.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] gi|294342145|emb|CBH22923.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] Length = 524 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 123/341 (36%), Positives = 195/341 (57%), Gaps = 12/341 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F FIEG NR+A +AA SIA G T+ NP ++ VGLGKTHL+QAI Sbjct: 185 LNDSYTFDRFIEGECNRLARSAAHSIAT--DPGETS--FNPFLVYGGVGLGKTHLIQAIG 240 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N R + V Y+++E F F +I++N R +D+L++DD+QF GK Sbjct: 241 NHVAARDASKTVFYVSSERFTTEFVQSIQENQIGEFSTFYRQVDVLIVDDVQFFGGKEKT 300 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H+ N+L + Q+V +ADRPP E++ L+ R+ SR Q G+S L + R SIL Sbjct: 301 QEEFFHIFNALRQAGNQIVLSADRPPREIDGLEERLLSRFQWGLSADLKPPGLDTRISIL 360 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 + + ED ++++++V+ +A+++ ++ REL+GA +L+ + + +T ++A E Sbjct: 361 RRK-----AEDDGIDLDDDVVEFIAQSIESNIRELEGALIRLLAHATLHQLDITLDLAKE 415 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L L + ++DIQR+V +H IS+ + R R V R RQ+AMY +K T Sbjct: 416 VLHDLFQE-RAATLTVDDIQRIVCEHLGISQEKMRGKTRKRDVTRARQIAMYFTKKHTQH 474 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S +IG FG RDH+TV+HA VE + D + + V+ + Sbjct: 475 SLKDIGLHFGGRDHSTVIHANNAVEDRMADDESFRDTVDAI 515 >gi|330444376|ref|YP_004377362.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] gi|328807486|gb|AEB41659.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] Length = 450 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 143/458 (31%), Positives = 233/458 (50%), Gaps = 29/458 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K + + +W ++ + L VP F++ ++ + Y + + + Sbjct: 17 VKTRCSKTAFENWISPIQVVEETQEKIRLEVPNIFVQNYLLDNYKKDLCSFVPLDIHGEP 76 Query: 106 GVEILVRSVA-LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 +E +V + LP PS T P ++SP K+ F L+S + F Sbjct: 77 ALEFVVSEIKKLP--------PSSTVNEPREV-FAESPAEETKE-----FQLKLNSSYRF 122 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 FIEGSSN+ +AA IA Y NPLFIH VGLGKTHLL AI + + Sbjct: 123 DNFIEGSSNQFVKSAAVGIAGKPGRSY-----NPLFIHGGVGLGKTHLLHAIGHYVREHH 177 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHL 283 NL++ +T E F+ ++ +K+ R++DLLL+DD+QFLQ + + EFC+ Sbjct: 178 KNLKIHCITTEAFINDLVYHLKSKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNT 237 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 +L++ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +IL+++ Sbjct: 238 FETLINFSKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETRVAILQHK---- 292 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVN 402 E L I EV ++A + + R+L+GA N+L + F +T + L L Sbjct: 293 -AEQKGLVIPNEVAFYIADHIYGNVRQLEGAINKLTAYCRLFGKGITENTVHDTLKELFR 351 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + +K+ +E I + VA + + DL N R + +V RQVAMYL+K + S IG Sbjct: 352 SPTKQKVSVESILKSVATVFQVKIQDLKENSRAKELVLARQVAMYLAKTLITDSLVAIGA 411 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG + H+T+L+A + +E L+ D TLK +V L K I Sbjct: 412 AFG-KTHSTILYACKTIEHKLQEDDTLKHQVNLCKNHI 448 >gi|15618339|ref|NP_224624.1| chromosomal replication initiation protein [Chlamydophila pneumoniae CWL029] gi|15835957|ref|NP_300481.1| chromosomal replication initiation protein [Chlamydophila pneumoniae J138] gi|33241773|ref|NP_876714.1| chromosomal replication initiation protein [Chlamydophila pneumoniae TW-183] gi|14194706|sp|Q9Z8B9|DNAA2_CHLPN RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|4376705|gb|AAD18568.1| Replication Initiation Factor [Chlamydophila pneumoniae CWL029] gi|8978796|dbj|BAA98632.1| replication initiation factor [Chlamydophila pneumoniae J138] gi|33236282|gb|AAP98371.1| replication initiation protein dnaA [Chlamydophila pneumoniae TW-183] gi|269303303|gb|ACZ33403.1| chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae LPCoLN] Length = 450 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/349 (36%), Positives = 195/349 (55%), Gaps = 14/349 (4%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F L+ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL Sbjct: 112 FELKLNLSYRFDNFIEGPSNQFVKSAAVGIAGKPGRSY-----NPLFIHGGVGLGKTHLL 166 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ + + NLR+ +T E F+ ++ +K+ R++DLLL+DD+QFLQ Sbjct: 167 HAVGHYVREHHKNLRIHCITTEAFINDLVYHLKSKSVDKMKNFYRSLDLLLVDDIQFLQN 226 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 + + EFC+ +L++ +KQ+V +D+PPS+L+ L RI +R++ G+ +G+ D E R Sbjct: 227 RQNFEEEFCNTFETLINLSKQIVITSDKPPSQLK-LSERIIARMEWGLVAHVGIPDLETR 285 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAE 391 +IL+++ E L I E+ ++A + + R+L+GA N+L + F LT Sbjct: 286 VAILQHK-----AEQKGLLIPNEMAFYIADHIYGNVRQLEGAINKLTAYCRLFGKSLTET 340 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L + +K+ +E I + VA + + NDL N R + +V RQ+AMYL+K Sbjct: 341 TVRETLKELFRSPTKQKISVETILKSVATVFQVKLNDLKGNSRSKDLVLARQIAMYLAKT 400 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + S IG FG + H+TVL+A + +E L+ D TLK++V L K I Sbjct: 401 LITDSLVAIGAAFG-KTHSTVLYACKTIEHKLQNDETLKRQVNLCKNHI 448 >gi|292669293|ref|ZP_06602719.1| ATPase [Selenomonas noxia ATCC 43541] gi|292649134|gb|EFF67106.1| ATPase [Selenomonas noxia ATCC 43541] Length = 478 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 135/464 (29%), Positives = 240/464 (51%), Gaps = 25/464 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ V ++ + D W R+ ++ + + L+V F K +I+ RYL + Sbjct: 10 EPLWQKVLAKTDGILPKDAVNQWISRIMPVALENGELVLAVRDTFTKQYIEPRYLALLGD 69 Query: 96 LFQEEHSRIQGVEILV---------RSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 + + ++V S+ P T P + +P ++ +P Sbjct: 70 AVHQALGADYTIRLVVDAKKAEPAKESILRPEPAPTKEEPKQSADTPAQGSLPLTPTPSD 129 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 +P + L+ ++ F F+ G SN+ A+++A D+ G + NPLFI+ VG Sbjct: 130 THAAAPDDATTLNPKYTFDAFVTGRSNQFPYAMAKAVA--DAPGLPS--HNPLFIYGGVG 185 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ A+ + + P+ RV+Y+ + F F +IR+ ++ +ID+LLID Sbjct: 186 LGKTHLMHAVGHKILADHPDRRVLYIASTDFTNEFIRSIREKNMDAFREKYYSIDVLLID 245 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF G+ Q EF N L D+ Q++ +DR P +++ L+ R+ SR GG V + Sbjct: 246 DIQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQDVKGLEDRLISRFAGGAPVDIQ 305 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 ++E R +IL+ + +Q E+ ++I E+V+ ++A V ++ REL+GA +L+ S Sbjct: 306 PPEFETRVAILQKK---AQSEE--VDIPEDVVTYIASRVDSNIRELEGALTRLIKYASTM 360 Query: 385 -APILTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 PI L ++L GET +++ +E I+R+V H+ ++ D+ S +R + PR Sbjct: 361 RMPIDETTCVAALGNYL--RGETGRRITMEMIERIVCTHFKVTSEDIRSTKRSNDIAYPR 418 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 Q+AMYL +T S+P IG F +RDH+TV+HA +K++ + D Sbjct: 419 QIAMYLCHELTDVSWPTIGGFF-NRDHSTVIHAHKKIQSLTSED 461 >gi|16330393|ref|NP_441121.1| chromosomal replication initiation protein [Synechocystis sp. PCC 6803] gi|2506358|sp|P49995|DNAA_SYNY3 RecName: Full=Chromosomal replication initiator protein DnaA gi|1652883|dbj|BAA17801.1| chromosomal replication initiator protein; DnaA [Synechocystis sp. PCC 6803] Length = 447 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 142/461 (30%), Positives = 236/461 (51%), Gaps = 45/461 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+CE+++ + L Q+ + +W + S+ + + V F+ ++ Y Sbjct: 2 VSCENLWQQALAILATQLTKPAFDTWIKASVLISLGDGVATIQVENGFVLNHLQKSY--- 58 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 L E + + G EI V+ + L P + ++G+++ P Sbjct: 59 -GPLLMEVLTDLTGQEITVKLIT-------------DGLEPHS--------LIGQESSLP 96 Query: 153 VFGSP-----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + +P L+ ++ FS F+ G +NR+A A+ ++AE + NPLF+ VGL Sbjct: 97 METTPKNATALNGKYTFSRFVVGPTNRMAHAASLAVAESPGREF-----NPLFLCGGVGL 151 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAIA+ ++ PN +V Y++ E F +AIR + + + R+ D LLIDD Sbjct: 152 GKTHLMQAIAHYRLEMYPNAKVYYVSTERFTNDLITAIRQDNMEDFRSYYRSADFLLIDD 211 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK Q EF H NSL ++ KQVV A+DR P + L R+ SR G+ + + Sbjct: 212 IQFIKGKEYTQEEFFHTFNSLHEAGKQVVVASDRAPQRIPGLQDRLISRFSMGLIADIQV 271 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ + E ++ + +EV+ ++A T++ REL+GA + + S + Sbjct: 272 PDLETRMAILQKK-----AEYDRIRLPKEVIEYIASHYTSNIRELEGALIRAIAYTSLSN 326 Query: 387 I-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +T E +L+ V E E I +VA+HY + +LLSN R R V RQV Sbjct: 327 VAMTVENIAPVLNPPV---EKVAAAPETIITIVAQHYQLKVEELLSNSRRREVSLARQVG 383 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 MYL + T S P IG FG +DHTTV+++ K+ ++ + D Sbjct: 384 MYLMRQHTDLSLPRIGEAFGGKDHTTVMYSCDKITQLQQKD 424 >gi|313894736|ref|ZP_07828297.1| chromosomal replication initiator protein DnaA [Selenomonas sp. oral taxon 137 str. F0430] gi|312976645|gb|EFR42099.1| chromosomal replication initiator protein DnaA [Selenomonas sp. oral taxon 137 str. F0430] Length = 487 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 141/439 (32%), Positives = 224/439 (51%), Gaps = 42/439 (9%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP------- 126 L+VP F K +I+ RYL L + R V PS + +P Sbjct: 48 LAVPDAFTKQFIEQRYL----VLLSDAAHAALDAAYTFRLVVDPSTAPKSPAPREHASSS 103 Query: 127 ------------SITKLSPINTNISKSPIILGKQT---ISPVFGSPLDSRFVFSTFIEGS 171 S SP ++ +P + T +P + L+ ++ F F+ G Sbjct: 104 LDGAGTTADEIASYGSSSPAQGALTLTPPVPDAGTSHAAAPDDATTLNPKYTFDAFVTGR 163 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SN+ + A+S+AE NPLFI+ VGLGKTHL+ A+ + + P+ RV+Y Sbjct: 164 SNQFSYAMAKSVAEAPGLPSN----NPLFIYGGVGLGKTHLMHAVGHKILADHPDKRVLY 219 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDS 290 + + F F SAI ++ ID+LLIDD+QF G+L Q EF + N L DS Sbjct: 220 IASMDFTNEFISAIGKKNTDEFREKYYAIDVLLIDDIQFFSGQLQTQAEFFQMFNKLRDS 279 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 +Q++ DR P E++ L+ R+ SR GGV V + ++E R +IL+ + +Q E+ + Sbjct: 280 GRQIIMTCDRQPQEVKGLEDRLISRFSGGVVVDIQPPEFETRMAILQKK---AQSEE--I 334 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGET-K 407 +I +V+ ++A V ++ REL+GA +L+ S PI + L ++L GET + Sbjct: 335 DIPGDVMTYIASRVDSNIRELEGALTRLIKYASTMRLPIDESTCVAALGNYL--RGETGR 392 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ +E I+ MV H+ I D+ S +R + PRQVAMYL +T S+P IG F +R Sbjct: 393 RITMEVIESMVCTHFKIKSEDIRSTKRSNDIAFPRQVAMYLCHELTDVSWPTIGGFF-NR 451 Query: 468 DHTTVLHAVRKVEKMLETD 486 DH+TV+HA +K++ ++ D Sbjct: 452 DHSTVIHAHKKIQSLVSED 470 >gi|313671971|ref|YP_004050082.1| chromosomal replication initiator protein dnaa [Calditerrivibrio nitroreducens DSM 19672] gi|312938727|gb|ADR17919.1| chromosomal replication initiator protein DnaA [Calditerrivibrio nitroreducens DSM 19672] Length = 443 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 138/459 (30%), Positives = 234/459 (50%), Gaps = 40/459 (8%) Query: 49 QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE 108 + P + +W + LK + +++ + P F K W++++YLET+ K+F EE++ ++ Sbjct: 16 KFSPQIVNTWLKPLKILDMRGDLITIEAPNRFYKNWVEDKYLETLKKIFLEEYNIQSEIQ 75 Query: 109 ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 I++ SS + P + + IL T L+ ++ F F+ Sbjct: 76 IVI-----------GSSTQSYREQPQDQTVKAQNTILNNST-------NLNKQYTFDNFV 117 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 GSSN+ AA ++AE GY NPLFI+ VGLGKTHL+ AI N +++ P L+ Sbjct: 118 VGSSNQFPHAAALAVAE----GYFQT-YNPLFIYGGVGLGKTHLMHAIGNKILEKFPKLK 172 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSL 287 ++Y+++E F A++ ++ RNIDLLL DD+QFL GK EF + NSL Sbjct: 173 ILYISSEAFTNEMIYALKSKTMDIFREKYRNIDLLLFDDVQFLAGKTRSTEEFFYTFNSL 232 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 D KQ+V +D+ P+E+ L+ R+RSR G+ + + + +I+ R I Sbjct: 233 YDMQKQIVLTSDKEPNEIPDLEERLRSRFSWGLVADIQPPSVDEKVAIILKRSEIMN--- 289 Query: 348 PKLNINEEVLMHVARTVTTSG-RELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTG 404 + ++ EV +A + R+L GA +L +F PI T E+A + L + Sbjct: 290 --IYVSNEVAHFLAENLKGDNIRDLIGALIRLNAFSTFHNEPI-TIELAKKALEKFI--- 343 Query: 405 ETKKMRI---EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 KK I E + V ++N+ + ++ S R R + PRQVAMY+ + +I Sbjct: 344 -IKKDIIVTPEAVINAVCSYFNVKQQEIKSKNRSRVISYPRQVAMYILREKLNLPLQDIA 402 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG R+H+TVLH++++++ +++D LK + + R I Sbjct: 403 NIFGGRNHSTVLHSIKEIQNRMQSDQELKSVINTIIRNI 441 >gi|254281820|ref|ZP_04956788.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR51-B] gi|219678023|gb|EED34372.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR51-B] Length = 478 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 159/487 (32%), Positives = 259/487 (53%), Gaps = 44/487 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF-QEEHSRI 104 LK + + +W + L+ + I +S P F++ +++N+Y + IT+ F Q+ S + Sbjct: 4 LKGALPQQQFNTWIRPLEGRADEAGIT-ISAPNRFIRDFVENKYGDDITRYFAQQLPSGL 62 Query: 105 QGVEILVRSVAL--------PSVEKTAS----SPSITKLSP------INTNISKSPIILG 146 V +V A P+ T + P T +P N++I + + G Sbjct: 63 GAVSFVVAERACFRSSTSSSPTAGVTDTPADEEPGGTSTTPDSDKRGFNSDIDAAAVDPG 122 Query: 147 KQTISPVFGSP---------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 P L S + F +F+EG SN++AL AAQ +AE + Y N Sbjct: 123 NVIALPRATPAAALAANQRNLVSGYTFDSFVEGKSNQLALAAAQQVAENPGNSY-----N 177 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLF++ VGLGKTHL+ A+ NA R+P+ ++VYL +E F+ A++ N + K Sbjct: 178 PLFLYGGVGLGKTHLMHAVGNALRARKPDAKIVYLHSERFVADMVKALQLNAINDFKRYY 237 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R +D LLIDD+QF K Q EF H N+LL+ +Q++ DR P E++ L+ R++SR Sbjct: 238 RTVDALLIDDIQFFANKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEIDGLEERLKSRF 297 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G++V + + E R +IL + A + +++ E +A+ + ++ REL+GA Sbjct: 298 GWGLTVAVEPPELETRVAILMKKAA-----EADIDLVPEAAFFIAQRIRSNVRELEGALK 352 Query: 377 QLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 +++ +F P I D L L + +++ +++I+R VA++Y I DLLS RR Sbjct: 353 RVIASANFTGRPYDIELIKDSLKDLLAL--QDRQISLDNIKRTVAEYYKIKLADLLSRRR 410 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ + ET ++++ + Sbjct: 411 SRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIRDLRETTSDIREDFK 470 Query: 495 LLKRLIS 501 L R ++ Sbjct: 471 NLMRSLT 477 >gi|103485499|ref|YP_615060.1| chromosomal replication initiation protein [Sphingopyxis alaskensis RB2256] gi|122984662|sp|Q1GN68|DNAA_SPHAL RecName: Full=Chromosomal replication initiator protein DnaA gi|98975576|gb|ABF51727.1| chromosomal replication initiator protein DnaA [Sphingopyxis alaskensis RB2256] Length = 453 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 158/477 (33%), Positives = 261/477 (54%), Gaps = 43/477 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + +++ V+ L+ +G + W + ++F + L +V L + F WI R+ + Sbjct: 4 DAAALWPRVAEGLRRDLGARTFDHWLKPVRFADYCALSGVVTLETASRFSANWINERFGD 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT-----NISKSPIILG 146 + ++++ ++ V + + + E+ A+ S+ P+ T + +P +LG Sbjct: 64 RLELAWRQQLPAVRSVSV---RGGVAATERAATLASV----PLPTFDAPAAPAANPALLG 116 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 D R F F+ SN +A AA+ +A V+ + NPL++ + G Sbjct: 117 -----------FDPRLSFDRFVVARSNILAANAARRMAMVERPQF-----NPLYLCSGTG 160 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 GKTHLLQAIA P ++ ++AE FM F A+R + K LR DLLL+D Sbjct: 161 QGKTHLLQAIAQDYAAAHPTATIILMSAEKFMLEFVGAMRGGDMMAFKARLRAADLLLLD 220 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q E H ++ L+ + K++V ADRPP+ L+ ++ R+ SRL GG+ + Sbjct: 221 DLQFVIGKNSTQEELLHTIDDLMTAGKRLVVTADRPPAMLDGVEARLLSRLSGGLVADIE 280 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 + ++R I++ RLA P + + ++V+ + + T + REL+GA N+L+ ++A Sbjct: 281 APEDDLRERIIRQRLAAM----PMVEVPDDVIAWLVKHFTRNIRELEGALNKLL---AYA 333 Query: 386 PILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + A I A++ L+ V + ++ I++IQR V HY + R+D+ S RRVR V RP Sbjct: 334 ALTGARIDLMLAEDRLAENVRSAR-PRITIDEIQRAVCAHYRLDRSDMSSKRRVRAVARP 392 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RQVAMYL+K +TPRS+PEIGRRFG RDH+TV+HAVR VE + D L E+ ++R Sbjct: 393 RQVAMYLAKELTPRSYPEIGRRFGGRDHSTVIHAVRTVEALRVADSELDAEIAAIRR 449 >gi|329942717|ref|ZP_08291496.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|332287313|ref|YP_004422214.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|313847897|emb|CBY16892.1| chromosomal replication initiator protein [Chlamydophila psittaci RD1] gi|325506504|gb|ADZ18142.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|328814977|gb|EGF84966.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|328914557|gb|AEB55390.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci 6BC] Length = 450 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 139/457 (30%), Positives = 230/457 (50%), Gaps = 27/457 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K + + +W ++ + L VP F++ ++ + Y + + + Sbjct: 17 VKTRCSKTAFENWISPIQIIEETQEKIRLEVPNIFVQNYLLDNYKQDLCSFVPLDAQGEP 76 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E +V + + A P + +P T S F L++ + F Sbjct: 77 ALEFVVAEIKKAPPQPLA--PREQQETPTETFEE-----------SKDFELKLNTAYRFD 123 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ + + Sbjct: 124 NFIEGPSNQFVKSAAVGIAGRPGRSY-----NPLFIHGGVGLGKTHLLHAVGHYVREHHK 178 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLL 284 NLRV +T E F+ +R +K+ R++DLLL+DD+QFLQ + + EFC+ Sbjct: 179 NLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCNTF 238 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 +L++ KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +IL+++ Sbjct: 239 ETLINLNKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETRVAILQHK----- 292 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNT 403 E L+I E+ ++A + + R+L+GA N+L + F LT I + L L + Sbjct: 293 AEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTESIVRDTLKELFRS 352 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 +K+ +E I + VA + + DL N R + +V RQVAMYL+K + S IG Sbjct: 353 PSKQKVSVESILKSVATVFQVKLQDLKGNSRSKELVLARQVAMYLAKTLITDSLVAIGSA 412 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG + H+TVL+A + +E+ +E D TL +++ L K I Sbjct: 413 FG-KTHSTVLYACKTIEQKIEKDETLTRQISLCKNHI 448 >gi|226225407|ref|YP_002759513.1| chromosomal replication initiator protein DnaA [Gemmatimonas aurantiaca T-27] gi|226088598|dbj|BAH37043.1| chromosomal replication initiator protein DnaA [Gemmatimonas aurantiaca T-27] Length = 472 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 207/376 (55%), Gaps = 29/376 (7%) Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 ++P +S +PI+ P +PL+ R+ F F+ G SN VA AAQ+ A+ Sbjct: 95 VAPPPVAVSTAPIVQ-----QPRISTPLNPRYTFDQFVIGKSNDVAAAAAQAAAQAPGKV 149 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ GLGKTHL+Q IA+ ++R P LR+ Y+ E F F AI+ Sbjct: 150 Y-----NPLFIYGETGLGKTHLMQGIAHELLRRTPTLRLAYVGTEQFTNEFIGAIQAGAM 204 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + + R IDLLL+DD+QFL+GK Q EF H N++ ++ +Q+V +DRPP E+ L+ Sbjct: 205 GDFRRRFREIDLLLVDDVQFLKGKESTQEEFFHTFNAIYEAGRQIVLTSDRPPKEIPGLE 264 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR + G+ + D E R +ILK + ++ E L I +EV+ +A+ V +S R Sbjct: 265 SRLVSRFEWGMVANIDSPDLEHRIAILKKKASLDHLE---LTIPDEVIEFIAQHVKSSVR 321 Query: 370 ELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKK--------MRIEDIQRM 417 EL+G+ +L+ ++A + ++ ++A E L + G + + + IQ++ Sbjct: 322 ELEGSIIKLL---AYASLKHRDISVDLAREALRDKLRAGSSSDFPDVPPTTITVATIQQV 378 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA+ + ++ + L S R + + PRQ+AMYL + + EIG FG RDH+TV+H++ Sbjct: 379 VAREWGVTPDGLRSKTRTKQLTVPRQIAMYLCRELLALQLVEIGNAFGGRDHSTVIHSLD 438 Query: 478 KVEKMLETDITLKKEV 493 +V + D + V Sbjct: 439 RVADEMNGDPAFTERV 454 >gi|183980036|ref|YP_001848327.1| chromosomal replication initiator protein DnaA [Mycobacterium marinum M] gi|226735828|sp|B2HI46|DNAA_MYCMM RecName: Full=Chromosomal replication initiator protein DnaA gi|183173362|gb|ACC38472.1| Chromosomal replication initiator protein DnaA [Mycobacterium marinum M] Length = 510 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 122/334 (36%), Positives = 200/334 (59%), Gaps = 15/334 (4%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T + G+ L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI GLG Sbjct: 162 TSASAGGTSLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLG 216 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+ Sbjct: 217 KTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDI 276 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + Sbjct: 277 QFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPP 336 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--A 385 + E R +IL+ + +Q E +L + ++VL +A ++ + REL+GA ++ S Sbjct: 337 ELETRIAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKT 391 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 PI A +A+ +L L+ T ++ I A++++ + +L + R + + RQ+A Sbjct: 392 PIDKA-LAEIVLRDLIADAGTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIA 450 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 MYL + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 451 MYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKI 483 >gi|198275620|ref|ZP_03208151.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135] gi|198271249|gb|EDY95519.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135] Length = 471 Score = 207 bits (528), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 140/464 (30%), Positives = 245/464 (52%), Gaps = 30/464 (6%) Query: 44 SRLKNQVGPDVYASWFQR---LKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE 100 S +K+ V + +WF+ LK+ + + + VP+ F +++ +Y+ + +E Sbjct: 16 SFIKDNVNATAFKTWFEPIVPLKYEAT-EKALTIGVPSPFFYEYLEEKYVGLLRAAIYKE 74 Query: 101 HSRIQGVEILVRSVA------LPSVEKTASSPSITKLSPI-NTNISKSPIILGKQTISPV 153 +G E++ + ++E T S ++ + +P+ N N + +P+ Q +P Sbjct: 75 IG--EGTELMYSILTDKTNHITVNIEGTKRSSALPEQAPVYNGNKTPNPL----QAPAPQ 128 Query: 154 FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 P L+ + F FI+G+SN + T A+++A+ + + NPLFI+ G+GKTHL Sbjct: 129 DLDPHLNPNYNFENFIKGNSNEFSRTVAETVAQNPARTF-----NPLFIYGPSGVGKTHL 183 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + P RV+Y++A F ++ ++R N + + ID+L+IDD+Q Sbjct: 184 INAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIIDDIQEFA 243 Query: 273 G-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L D E+ Sbjct: 244 GVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRFKWGLVAELEKPDIEL 303 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTA 390 R +IL+N++ K D L I E V+ ++A +V S REL+G N L+ + F + Sbjct: 304 RKNILRNKI----KRD-GLTIPESVISYIAESVNESVRELEGIVNSLLAQSILFKREIDL 358 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A ++ V E+K M + DI V +HY I + + R R VV+ RQVAMYL+K Sbjct: 359 DLAQRIVRKAVKCAESKPMTVSDIITKVCEHYKIDETAIHTKTRKREVVQVRQVAMYLAK 418 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 T S +IG+ G++DH TVLHA + V+ ++ D K E+E Sbjct: 419 KHTDTSSSKIGQLIGNKDHATVLHACKIVKDQVDVDKAFKAEIE 462 >gi|163854305|ref|YP_001628603.1| chromosomal replication initiation protein [Bordetella petrii DSM 12804] gi|226735783|sp|A9HVA1|DNAA_BORPD RecName: Full=Chromosomal replication initiator protein DnaA gi|163258033|emb|CAP40332.1| chromosomal replication initiator protein [Bordetella petrii] Length = 478 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 141/458 (30%), Positives = 230/458 (50%), Gaps = 34/458 (7%) Query: 44 SRLKNQVGPDVYASWFQRLK--FHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 SRL+ ++ P ++W + L + ++ ++ P F W++ + I L E Sbjct: 10 SRLEQELPPQQISAWIRPLVPLAYDETQAVLRVAAPNRFKLDWVRKNFSHQIEALAAEWF 69 Query: 102 SR-IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG----- 155 R +Q L A P + +P+ +P++ ++ +P Q Sbjct: 70 QRPVQVAFELPAGGAGPRMPAVPRTPAGAP-APVSAGMAATPAGAPAQAPVAPAAVAAAV 128 Query: 156 -----------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 S L++ F F+ G +N++A AA +AE Y NPLF++ Sbjct: 129 QADAAGVVYERSRLNTDLTFDNFVTGKANQLARAAALQVAENPGISY-----NPLFLYGG 183 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI NA + +RV Y+ A+ ++ A + + K ++DLLL Sbjct: 184 VGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLL 243 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF GK Q EF + +++ KQ++ +D P EL +D R+ SR G++V Sbjct: 244 IDDIQFFSGKSRTQEEFFYAFEAMVAQRKQIIITSDTYPKELAGIDSRLISRFDSGLTVA 303 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + EMR +IL + + E + + EEV +A+ + ++ REL+GA +++ Sbjct: 304 IEPPELEMRVAIL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYAR 358 Query: 384 FAP--ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 F +L+ ++ E L L++ ++ +E+IQ+ VA Y I D+ S RR + P Sbjct: 359 FHGRDVLSVDVCKEALKDLLSV-SNGQITVENIQKTVADFYKIKVADMYSKRRPANIALP 417 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 RQVAMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 418 RQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI 455 >gi|118615920|ref|YP_904252.1| chromosomal replication initiation protein [Mycobacterium ulcerans Agy99] gi|166214684|sp|A0PKB2|DNAA_MYCUA RecName: Full=Chromosomal replication initiator protein DnaA gi|118568030|gb|ABL02781.1| chromosomal replication initiator protein DnaA [Mycobacterium ulcerans Agy99] Length = 510 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 120/328 (36%), Positives = 198/328 (60%), Gaps = 15/328 (4%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI GLGKTHLL Sbjct: 168 GTSLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLH 222 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++GK Sbjct: 223 AAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGK 282 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 283 EGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRI 342 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAE 391 +IL+ + +Q E +L + ++VL +A ++ + REL+GA ++ S PI A Sbjct: 343 AILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKA- 396 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ +L L+ +T ++ I ++++ + +L + R + + RQ+AMYL + Sbjct: 397 LAEIVLRDLIADADTMQISAATIMAATVEYFDTTVEELRGPGKTRALAQSRQIAMYLCRE 456 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 457 LTDLSLPKIGQAFG-RDHTTVMYAQRKI 483 >gi|15638996|ref|NP_218442.1| chromosomal replication initiation protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025237|ref|YP_001933009.1| chromosomal replication initiation protein [Treponema pallidum subsp. pallidum SS14] gi|6014982|sp|O83047|DNAA_TREPA RecName: Full=Chromosomal replication initiator protein DnaA gi|226735862|sp|B2S1V1|DNAA_TREPS RecName: Full=Chromosomal replication initiator protein DnaA gi|3322256|gb|AAC64999.1| chromosomal replication initiator protein (dnaA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017812|gb|ACD70430.1| chromosomal replication initiation protein DnaA [Treponema pallidum subsp. pallidum SS14] gi|291059421|gb|ADD72156.1| chromosomal replication initiator protein DnaA [Treponema pallidum subsp. pallidum str. Chicago] Length = 464 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 144/476 (30%), Positives = 253/476 (53%), Gaps = 24/476 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V E + S+++++ + WF L F + N + ++VP++F + +Y E Sbjct: 4 VGYEVFWNETLSQIRSESTEAEFNMWFAHLFFIASFENAIEIAVPSDFFRIQFSQKYQEK 63 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-SPI-ILGKQTI 150 + + F E + G I + L +V+K + ++T + K SP + K++ Sbjct: 64 LERKFLE----LSGHPIKL----LFAVKKGTPHGNTAPPKHVHTYLEKNSPAEVPSKKSF 115 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P L+ + F F+ G + + +AA S+++ Y NPL I+ VGLGKT Sbjct: 116 HP----DLNRDYTFENFVSGEETKFSHSAAISVSKNPGTSY-----NPLLIYGGVGLGKT 166 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQ 269 HL+QAI + I + +L V+Y+TAE F F S + + + K R D+LLIDD+ Sbjct: 167 HLMQAIGH-EIYKTTDLNVIYVTAENFGNEFISTLLNKKTQDFKKKYRYTADVLLIDDIH 225 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F + K +Q E + N L + KQ++ DRP EL++L R+RSR G+S L + Sbjct: 226 FFENKDGLQEELFYTFNELFEKKKQIIFTCDRPVQELKNLSSRLRSRCSRGLSTDLNMPC 285 Query: 329 YEMRFSILKNRLAISQKEDP--KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 +E R +IL ++ P ++I+++V+ V+ ++++ R+L+GA +++ + Sbjct: 286 FETRCAILIKKIQNYNSTYPHKAIHISDDVVRLVSENISSNIRDLEGALTKIIAFIEVSG 345 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +I LL + K + +E I +VA H+NIS +DL +R ++VV PRQ+AM Sbjct: 346 SITIDIVPSLLKEFFLSARPKHITVETILHVVADHFNISYSDLKGKKRNKSVVYPRQIAM 405 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +LSK +T S E+G FG RDH+TV++ +K+E + T+ +L+ ++LLK + + Sbjct: 406 FLSKELTELSTTELGIEFGGRDHSTVIYGCQKIEGEILTNPSLQANLDLLKSKVQD 461 >gi|225016760|ref|ZP_03705952.1| hypothetical protein CLOSTMETH_00672 [Clostridium methylpentosum DSM 5476] gi|224950428|gb|EEG31637.1| hypothetical protein CLOSTMETH_00672 [Clostridium methylpentosum DSM 5476] Length = 454 Score = 207 bits (527), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/463 (27%), Positives = 242/463 (52%), Gaps = 30/463 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 +F V ++++ P Y W + ++ L + + F K + +Y+ ++ F Sbjct: 7 VFNAVKQSCESELSPTAYGLWIKPIEPVEFKEGTAVLYLKSEFQKNIVMTKYMHMLSAAF 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTN---ISKSPIILGKQTISPVF 154 ++ I G ++ V + +++ ++L P ++ I+++ + KQ ++ + Sbjct: 67 KD----ILGFDVAVEIITEEAID--------SQLLPHESDLKGITQTAEPVKKQKLAESY 114 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + + F TFI GSSN A A +++A+ S Y NPLFI+ GLGKTHLL Sbjct: 115 NGG-EYEYTFDTFIVGSSNTFAYAACKAVAQQQSGAY-----NPLFIYGPSGLGKTHLLM 168 Query: 215 AIANASIKRQ-PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI++ IKRQ P+ ++Y+ E F +AI ++ R +D+LL+DD+QFL G Sbjct: 169 AISH-EIKRQNPDTNILYINGEAFANELITAIGRQATNEFREKYRRVDILLMDDIQFLAG 227 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + N L KQ+V +DRPP ++++L+ R+R+R + G+ + D+E R Sbjct: 228 KTQTQEEFFYTFNDLHQVGKQIVLTSDRPPKDIKTLEERLRTRFEWGLLADISPPDFETR 287 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAE 391 +I++ + + E P +EV +A + + R+L+GA ++ ++ + Sbjct: 288 IAIIRRKAQLLDIEMP-----DEVAEFIANRLKNNIRQLEGAVKKIKAYKLLAGSPPSIS 342 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A ++ ++N + + +E I + V + + +S D+ S++R + RQ+AMY+ + Sbjct: 343 MAQTVIRDILNDNQPTPVTVERIIKEVGRTFGVSEEDIRSSKRSSQISTARQIAMYIVRE 402 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +T EIG+ F RDH T+++A++KVE M++ D K+ +E Sbjct: 403 ITQMPLAEIGKEFNGRDHATIVYALQKVENMIQKDSHQKEIIE 445 >gi|227487662|ref|ZP_03917978.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092356|gb|EEI27668.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 527 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 203/357 (56%), Gaps = 19/357 (5%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P S L+ + F +F+ G SN+ + AA ++AE + Y NPL+I GLGKT Sbjct: 176 APAANSTLNPKHTFESFVIGKSNQFSQAAAFAVAESPAEAY-----NPLYIWGGSGLGKT 230 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A N +++ P +RV+Y+++E F + +++RD+ + K RN+D+L++DD+QF Sbjct: 231 HLLHATGNYALQLHPGIRVMYVSSEEFTNDYINSVRDDKQESFKHRYRNLDILMVDDIQF 290 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+GK Q EF H N+L + KQ++ ++DRPP L +L+ R+R+R Q G+ + D Sbjct: 291 LEGKEGTQEEFFHTFNALHQANKQIILSSDRPPQNLVTLEDRLRTRFQAGLITDIQPPDL 350 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL+ + AI++ + ++ + L +A S R L+GA L+ +FA + Sbjct: 351 ETRIAILEKK-AIAE----HVQVDRDSLTEIATPFPGSIRSLEGA---LIRVTAFASLTH 402 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T ++ E LS L+ T + ++ DI A+ +N+ + L + R V RQ+A Sbjct: 403 RQITPDLVREALSDLIGTEQNVEITPTDIIAETARFFNLPVSQLRGKTKTRPVSHARQLA 462 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYL + T S P+IG FG +DHTTV++A RK+ K + D +V+ L + I + Sbjct: 463 MYLCREFTSLSLPKIGAEFG-KDHTTVMYAERKIGKEMSKDRYTYDQVQQLAQNIKQ 518 >gi|320531085|ref|ZP_08032114.1| replication initiator protein DnaA [Selenomonas artemidis F0399] gi|320136667|gb|EFW28620.1| replication initiator protein DnaA [Selenomonas artemidis F0399] Length = 487 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 141/439 (32%), Positives = 223/439 (50%), Gaps = 42/439 (9%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP------- 126 L+VP F K +I+ RYL L + R V PS + +P Sbjct: 48 LAVPDAFTKQFIEQRYL----VLLSDAAHAALDAAYTFRLVVDPSTAPKSPAPREHASSS 103 Query: 127 ------------SITKLSPINTNISKSPIILGKQT---ISPVFGSPLDSRFVFSTFIEGS 171 S SP + +P + T +P + L+ ++ F F+ G Sbjct: 104 LDGAGTTADEIASYGSSSPAQGALPLTPPVPDAGTSHAAAPDDATTLNPKYTFDAFVTGR 163 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SN+ + A+S+AE NPLFI+ VGLGKTHL+ A+ + + P+ RV+Y Sbjct: 164 SNQFSYAMAKSVAEAPGLPSN----NPLFIYGGVGLGKTHLMHAVGHKILADHPDKRVLY 219 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDS 290 + + F F SAI ++ ID+LLIDD+QF G+L Q EF + N L DS Sbjct: 220 IASMDFTNEFISAIGKKNTDEFREKYYAIDVLLIDDIQFFSGQLQTQAEFFQMFNKLRDS 279 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 +Q++ DR P E++ L+ R+ SR GGV V + ++E R +IL+ + +Q E+ + Sbjct: 280 GRQIIMTCDRQPQEVKGLEDRLISRFSGGVVVDIQPPEFETRMAILQKK---AQSEE--I 334 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGET-K 407 +I +V+ ++A V ++ REL+GA +L+ S PI + L ++L GET + Sbjct: 335 DIPGDVMTYIASRVDSNIRELEGALTRLIKYASTMRLPIDESTCVAALGNYL--RGETGR 392 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ +E I+ MV H+ I D+ S +R + PRQVAMYL +T S+P IG F +R Sbjct: 393 RITMEVIESMVCTHFKIKSEDIRSTKRSNDIAFPRQVAMYLCHELTDVSWPTIGGFF-NR 451 Query: 468 DHTTVLHAVRKVEKMLETD 486 DH+TV+HA +K++ ++ D Sbjct: 452 DHSTVIHAHKKIQSLVSED 470 >gi|227541371|ref|ZP_03971420.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182922|gb|EEI63894.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 527 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 122/357 (34%), Positives = 203/357 (56%), Gaps = 19/357 (5%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P S L+ + F +F+ G SN+ + AA ++AE + Y NPL+I GLGKT Sbjct: 176 APAANSTLNPKHTFESFVIGKSNQFSQAAAFAVAESPAEAY-----NPLYIWGGSGLGKT 230 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A N +++ P +RV+Y+++E F + +++RD+ + K RN+D+L++DD+QF Sbjct: 231 HLLHATGNYALQLHPGIRVMYVSSEEFTNDYINSVRDDKQESFKHRYRNLDILMVDDIQF 290 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+GK Q EF H N+L + KQ++ ++DRPP L +L+ R+R+R Q G+ + D Sbjct: 291 LEGKEGTQEEFFHTFNALHQANKQIILSSDRPPQNLVTLEDRLRTRFQAGLITDIQPPDL 350 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL+ + AI++ + ++ + L +A S R L+GA L+ +FA + Sbjct: 351 ETRIAILEKK-AIAE----HVQVDRDSLTEIATPFPGSIRSLEGA---LIRVTAFASLTH 402 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T ++ E LS L+ T + ++ DI A+ +N+ + L + R V RQ+A Sbjct: 403 RQITPDLVREALSDLIGTEQNVEITPTDIIAETARFFNLPVSQLRGKTKTRPVSHARQLA 462 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYL + T S P+IG FG +DHTTV++A RK+ K + D +V+ L + I + Sbjct: 463 MYLCREFTSLSLPKIGAEFG-KDHTTVMYAERKIGKEMSKDRDTYDQVQQLAQNIKQ 518 >gi|154496124|ref|ZP_02034820.1| hypothetical protein BACCAP_00408 [Bacteroides capillosus ATCC 29799] gi|150274679|gb|EDN01743.1| hypothetical protein BACCAP_00408 [Bacteroides capillosus ATCC 29799] Length = 426 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 137/448 (30%), Positives = 221/448 (49%), Gaps = 47/448 (10%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +WF ++ + + PTNF + I+ RY+ I K E + VE+L Sbjct: 12 TWFDDCTAVALEEDRFVIHSPTNFKRDIIRKRYVPNIQKALHELFAADFQVEVLGEGELD 71 Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 E AS P + P + + F F+ GSSN+ A Sbjct: 72 HFTE--ASKPVDSTFLPGTED------------------------YTFERFVVGSSNKFA 105 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA S+AE Y NPLFI+ GLGKTHLL AIA+ +P+ RVVY+ + Sbjct: 106 HAAALSVAENPGKSY-----NPLFIYGESGLGKTHLLYAIAHKIHATRPDFRVVYIKGDA 160 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F AIR+ ++ R+ D+ L+DD+QF+ G+ Q E H N+L ++ +Q+V Sbjct: 161 FTNELIQAIREGSNQEFREKFRSADVFLMDDVQFIAGRESSQEEMFHTFNTLYEAGRQIV 220 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 ADRPP E+ LD R+++R + G+ V + DYE R +I+KN+ E P E Sbjct: 221 FTADRPPKEMLRLDDRLKTRFEWGLPVDIKPPDYETRVAIIKNKAIRRGMELP-----EP 275 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRI---- 411 VL ++A +T++ R+++G N+++ +F ++ + + ++ V +K Sbjct: 276 VLQYIAENITSNVRQIEGTVNKIL---AFQELMGESVDVDTVTRAVRDMFKEKAEFLPSA 332 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 + I V K YNI + L R + RQ+AMYL + MT S EIG+ F RDHTT Sbjct: 333 DVIIEEVCKFYNIENDALRGQGRTKDTALARQMAMYLIRRMTSLSLKEIGKEFEGRDHTT 392 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRL 499 V+H++ ++E +++++ + E++K L Sbjct: 393 VMHSIERIENLMKSNAEV---AEIIKDL 417 >gi|108796982|ref|YP_637179.1| chromosomal replication initiation protein [Mycobacterium sp. MCS] gi|119866066|ref|YP_936018.1| chromosomal replication initiation protein [Mycobacterium sp. KMS] gi|126432614|ref|YP_001068305.1| chromosomal replication initiation protein [Mycobacterium sp. JLS] gi|123179824|sp|Q1BG61|DNAA_MYCSS RecName: Full=Chromosomal replication initiator protein DnaA gi|166214681|sp|A3PSD7|DNAA_MYCSJ RecName: Full=Chromosomal replication initiator protein DnaA gi|166214682|sp|A1U8S0|DNAA_MYCSK RecName: Full=Chromosomal replication initiator protein DnaA gi|108767401|gb|ABG06123.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. MCS] gi|119692155|gb|ABL89228.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. KMS] gi|126232414|gb|ABN95814.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. JLS] Length = 495 Score = 207 bits (526), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 140/438 (31%), Positives = 235/438 (53%), Gaps = 29/438 (6%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI-TKLFQEEHSRIQ-GVEILVRSV 114 +W + +K + LSVPT F++ I+ E I T L + R++ GV I S Sbjct: 45 AWLKLVKPLVITEGFALLSVPTPFVQNEIERHLREPIITALSRHLGQRVELGVRIATPSP 104 Query: 115 ALPSVEKTASSPSITKLSP-INTNISKS---PIILGKQTISPVFGSP----LDSRFVFST 166 + I ++ +S P + +P P L+ R+ F T Sbjct: 105 EDDDPPPSPVIADIDEVDEDTEARVSAEETWPRYFSRPPETPAAEDPNAVSLNRRYTFDT 164 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G+SNR A A +IAE + Y NPLFI GLGKTHLL A N + + P Sbjct: 165 FVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPG 219 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +RV Y++ E F F +++RD+ + K S R+ID+LL+DD+QF++GK IQ EF H N Sbjct: 220 MRVKYVSTEEFTNDFINSLRDDRKASFKRSYRDIDVLLVDDIQFIEGKEGIQEEFFHTFN 279 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + Sbjct: 280 TLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRKKAQMD-- 337 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLV 401 +L++ ++VL +A ++ + REL+GA L+ +FA + + +A+ +L L+ Sbjct: 338 ---RLDVPDDVLELIASSIERNIRELEGA---LIRVTAFASLNKTPIDKSLAEIVLRDLI 391 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + T ++ I A+++ + +L + R + + RQ+AMYL + +T S P+IG Sbjct: 392 SDASTMQISTAAIMAATAEYFETTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIG 451 Query: 462 RRFGDRDHTTVLHAVRKV 479 + FG RDHTTV++A +K+ Sbjct: 452 QAFG-RDHTTVMYAEKKI 468 >gi|152963973|ref|YP_001359757.1| chromosomal replication initiator protein DnaA [Kineococcus radiotolerans SRS30216] gi|189044597|sp|A6W3V4|DNAA_KINRD RecName: Full=Chromosomal replication initiator protein DnaA gi|151358490|gb|ABS01493.1| chromosomal replication initiator protein DnaA [Kineococcus radiotolerans SRS30216] Length = 518 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 214/363 (58%), Gaps = 22/363 (6%) Query: 146 GKQTISP---VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 G+Q P + S L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ Sbjct: 163 GRQPRRPTTRIENSRLNPKYIFETFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIY 217 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL AI + + P ++V Y+ +E F F ++IRD+ A + R++D+ Sbjct: 218 GESGLGKTHLLHAIGHYAQNLYPGVQVRYVNSEEFTNDFINSIRDDKAQAFQRRHRDVDV 277 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QFL K+ Q EF H N+L +++KQVV +D PP +L + R+RSR + G+ Sbjct: 278 LLIDDIQFLSNKVQTQEEFFHTFNTLHNASKQVVITSDLPPKQLSGFEERMRSRFEWGLI 337 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + D E R +IL+ + AI ++ L + ++V ++A ++++ REL+GA L+ Sbjct: 338 TDVQPPDLETRIAILRKK-AIGER----LEVPDDVNEYIASKISSNIRELEGA---LIRV 389 Query: 382 HSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 +FA + + ++A+ +L L+ ET ++ I A +++++ DL R RT Sbjct: 390 TAFASLNRQPVDMQLAEIVLRDLIPNEETPEITAAAIMGQTASYFSVTLEDLCGTSRSRT 449 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELL 496 +V RQ+AMYL + +T S P+IG+ FG RDHTTV+HA RK+ ++M E T + EL Sbjct: 450 LVTARQIAMYLCRELTELSLPKIGQHFGGRDHTTVMHAERKIKQQMAERRSTYNQVTELT 509 Query: 497 KRL 499 R+ Sbjct: 510 NRI 512 >gi|169823698|ref|YP_001691309.1| chromosomal replication initiation protein [Finegoldia magna ATCC 29328] gi|303234453|ref|ZP_07321091.1| chromosomal replication initiator protein DnaA [Finegoldia magna BVS033A4] gi|167830503|dbj|BAG07419.1| chromosomal replication initiation protein [Finegoldia magna ATCC 29328] gi|302494408|gb|EFL54176.1| chromosomal replication initiator protein DnaA [Finegoldia magna BVS033A4] Length = 485 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/352 (35%), Positives = 202/352 (57%), Gaps = 18/352 (5%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 SP +G L +++ F TF++G +N +AL AA ++A+ + Y NPLFIH GLGKT Sbjct: 139 SP-YGKNLIAKYKFDTFVKGKNNELALAAALAVAQNPATAY-----NPLFIHGKAGLGKT 192 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL---NLKDSLRNIDLLLIDD 267 HL+ AIA+ +K P RV+Y T+E F S+I D + RNID+LLIDD Sbjct: 193 HLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTKKNSQFRQKYRNIDVLLIDD 252 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N L + KQ++ ++DRPP E+++L+ R+ SR + G+ + Sbjct: 253 IQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKTLEERLVSRFEWGLMADIQP 312 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYE R +I+ L + P E++ ++A V ++ REL+GA +V + + Sbjct: 313 PDYETRVAIVNEYLDRNNTSLPP-----EIIDYIAMNVKSNIRELEGAVMNVVGQKTLIG 367 Query: 387 I--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T ++A +L L+ + + + I+ I V YN++ +DLLS +R + + PRQ+ Sbjct: 368 DGNITLDLAKNVLKQLIAETQLRPVTIDLIIECVCDRYNVTLDDLLSKKRSKQIAYPRQI 427 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 AMY+S+ + S I FG +DH+TV+H ++K+E ++ + +E+E L Sbjct: 428 AMYVSRKLLDISLVSIASSFG-KDHSTVMHGIKKIESDIKKNSEFDEEIENL 478 >gi|262039497|ref|ZP_06012799.1| chromosomal replication initiator protein DnaA [Leptotrichia goodfellowii F0264] gi|261746478|gb|EEY34015.1| chromosomal replication initiator protein DnaA [Leptotrichia goodfellowii F0264] Length = 453 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 142/482 (29%), Positives = 253/482 (52%), Gaps = 43/482 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDV-YASWFQRLKFHSVLHNIVHLSVPTNFLKAWI---K 86 ++VN +++ + KN + Y ++F+ +K +NI+ L+ + +K + K Sbjct: 1 MDVNASNLWDKILKIFKNNTSMETEYNAFFKNVKADDFSNNILSLNCNSPLMKEKMEKYK 60 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 N ET+ +F + +I +V ++ E S I + N N S Sbjct: 61 NEIEETLNDIFILSNEKIH----IVFNIK-KEEEPGEISYRIKEYRSTNQNSS------- 108 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ R FI G ++R+A A ++ E ++ Y NPLFI+ G Sbjct: 109 -------MKTGLNVRNRLDNFIVGDNSRMAYNACLAVLENEAPVY-----NPLFIYGGSG 156 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QA+ NA ++R P RV+Y T E F F +AI++ N +D+ RN+D+LL+D Sbjct: 157 LGKTHLMQAVGNAILERNPEKRVLYTTTEEFSNEFIAAIKEGRIKNFRDTFRNLDVLLLD 216 Query: 267 DMQFLQ---GKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 D+QF + G+ + + EF H N L +S KQ++ +DR P ++++L R+ SR G+ Sbjct: 217 DIQFFERIFGRGMGDTEEEFFHTFNKLQESGKQIIMISDRYPQDIKNLSKRLESRFISGL 276 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S + YE R +IL+N + I E I++ +L ++A +V+++ REL+G + Sbjct: 277 STEILEPGYETRKAILENIVEIKNIE-----IDDNILEYIAESVSSNVRELEGILTLINA 331 Query: 381 RHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 R I ++ DEL + + + K+ E I +V++ Y+I +++ + ++ + + Sbjct: 332 RAKLLNEKITLQQVQDELSTRM--RSQQSKITAEKIIEIVSQEYSIPVSEMKARKKKQEI 389 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V RQ AM+L K + + IG FG +DH+TV+ ++RK+E +E +I KKE++ +K+ Sbjct: 390 VDARQTAMFLIKNILDLNLTTIGGLFGGKDHSTVISSIRKIEGKIEENIAFKKELDRIKQ 449 Query: 499 LI 500 I Sbjct: 450 KI 451 >gi|148239038|ref|YP_001224425.1| chromosomal replication initiation protein [Synechococcus sp. WH 7803] gi|166215365|sp|A5GJL3|DNAA_SYNPW RecName: Full=Chromosomal replication initiator protein DnaA gi|147847577|emb|CAK23128.1| Chromosomal replication initiator protein dnaA [Synechococcus sp. WH 7803] Length = 464 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 142/477 (29%), Positives = 255/477 (53%), Gaps = 28/477 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ +++ V L++ + + +W + + + + L P +F W++ Y Sbjct: 1 MELTGSELWSKVQQTLQSNLSKPTFETWIRPAQCSAFTGGTLTLLAPNSFACNWLRKNYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSV---ALPSVEKTASSPSITKL-SPINTNISKSPIILG 146 TI + E R V + R V A S +T + P+ + +P+ ++ +P Sbjct: 61 GTIADVAGEILGRSVVVMVEARDVEPRAEASTPRTPAEPAESAPPAPMPEAVTTAP---- 116 Query: 147 KQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 P+ P L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI V Sbjct: 117 ----KPLRRLPGLNMRYVFNRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGGV 167 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAI + ++ P RV Y++ E F AIR + +D R DL+L+ Sbjct: 168 GLGKTHLMQAIGHYRLEIDPEARVFYVSTETFTNDLIVAIRRDGMQAFRDRYRAADLILV 227 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + Sbjct: 228 DDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADI 287 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + E ++ + +++ +++ T++ REL+GA + V +F Sbjct: 288 QAPDLETRMAILQKK-----AEQERVALPRDLIQYISGRFTSNIRELEGALTRAV---AF 339 Query: 385 APILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 A I + E ++ +++ +G+ ++ + + V++ + +S +D+ S+ R R V + RQ Sbjct: 340 ASITGMPMTVESVAPMLDPSGQGVEVTPQQVIDKVSEVFGVSVDDMRSSSRRRAVSQARQ 399 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 V M+L + T S P IG FG +DHTTV++A+ ++EK L +D L +V+ +K L+ Sbjct: 400 VGMFLMRQGTGLSLPRIGDTFGGKDHTTVMYAIEQIEKKLSSDPQLASQVQKVKDLL 456 >gi|213966256|ref|ZP_03394440.1| chromosomal replication initiator protein DnaA [Corynebacterium amycolatum SK46] gi|213951108|gb|EEB62506.1| chromosomal replication initiator protein DnaA [Corynebacterium amycolatum SK46] Length = 582 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 197/348 (56%), Gaps = 21/348 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F TF+ G N+ A AA ++AE Y NPLFI GLGKTHLL I Sbjct: 243 LNPNYTFETFVIGPQNKFAAAAAVAVAESPGRTY-----NPLFISGGSGLGKTHLLHGIG 297 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + PNLRV Y+++E F F +++RD+ + K R++D+L+IDD+QFL+GK Sbjct: 298 HYAKHLYPNLRVRYVSSEEFTNDFINSVRDDAQESFKRRYRDLDMLIIDDIQFLEGKEGT 357 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L S Q+V ++DRPP EL++L+ R+R+R Q G++ L D E R +IL Sbjct: 358 QEEFFHTFNALHQSNHQIVLSSDRPPRELKTLEDRLRTRFQWGLNPDLQYPDLETRIAIL 417 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + +S L + VL ++A ++S REL+G Q+ S P+ T + A Sbjct: 418 SKKAQLS-----DLAVPHNVLQYIAENTSSSIRELEGRLLQISAHASMIHEPV-TLKFAQ 471 Query: 395 ELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E+L + +++I E I A++++++ DL+ + R V RQ+AMYL++ Sbjct: 472 EILG-----ADEIEVQITPEIIISTTAEYFDLTVADLVGPGKTRPVAHARQIAMYLTRSF 526 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IGR FG+RDH+TVLHA RK+ K ++ K +V L I Sbjct: 527 TELSLPSIGREFGNRDHSTVLHAERKIVKEIQEKKPSKDQVNDLTTRI 574 >gi|89898823|ref|YP_521294.1| chromosomal replication initiation protein [Rhodoferax ferrireducens T118] gi|89343560|gb|ABD67763.1| chromosomal replication initiator protein DnaA [Rhodoferax ferrireducens T118] Length = 470 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 148/471 (31%), Positives = 242/471 (51%), Gaps = 23/471 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLE 91 + +S++ +L ++ + +W + L V ++ ++ V F WI+ +Y + Sbjct: 17 DGQSLWQTCVDQLAQELPEQQFNTWIKPLS-AQVTDDLAQITIFVANRFKLDWIRAQYSK 75 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 IT L + G I + P S + + PI + LG+ Sbjct: 76 RITSLLE----MFSGQTIHLELALAPREIFVRSQLTHRSMEPIPMDGVAE---LGEDRNP 128 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L++ F T IEG++NR+A AA +A + H Y NPLFI+ VGLGKTH Sbjct: 129 SSLKNRLNTALTFDTLIEGTANRMARAAAMHVAGMPGHLY-----NPLFIYGGVGLGKTH 183 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ A+ N + QPN +V+Y+ AE F+ A + K+ ++DLLLIDD+QF Sbjct: 184 LMHAVGNRLLADQPNAKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFF 243 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF + +LL +V +D P L + R+ SR G++V + + E Sbjct: 244 ANKERTQEEFFNAFEALLAKKSHIVMTSDTYPKGLTDIHERLVSRFDSGLTVAIEPPELE 303 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 MR +IL N+ + P EEV VA+ V ++ REL+GA +++ F ++ Sbjct: 304 MRVAILINKARVEGIVMP-----EEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKDIS 358 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L++ + +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+ Sbjct: 359 ILLAREALRDLLSI-QNRQISVENIQKTVADYYKIKIADMYSKKRPASIARPRQIAMYLA 417 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 418 KELTQKSLPEIGELFGGRDHTTVLHAVRKIGGERQQMTELNQQLHVLEQTL 468 >gi|291543411|emb|CBL16520.1| chromosomal replication initiator protein DnaA [Ruminococcus sp. 18P13] Length = 455 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 194/351 (55%), Gaps = 11/351 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ D + F TFI G SN A A ++A+ D + + NPLFI+ GLGKTHL+ Sbjct: 109 GAEYD--YTFDTFIVGKSNEFAYAACTAVAKHDRNKASDT-YNPLFIYGPSGLGKTHLMT 165 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL-KDSLRNIDLLLIDDMQFLQG 273 AIAN + PNL +VY+T E F AI+ +L D RN D+LL+DD+QF+ G Sbjct: 166 AIANEMRRNDPNLNIVYVTGETFANELIEAIQKKQDTSLFHDKYRNADVLLVDDVQFIAG 225 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N L KQ+V +DRPP +++ L+ RIRSR + G+ + D+E R Sbjct: 226 KDSTQEEFFHTFNKLHSEGKQIVLTSDRPPKDIKILEDRIRSRFESGLIADISTPDFETR 285 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAE 391 +I++ + + LN+ +EV +A + T+ R+L+GA +L +H + Sbjct: 286 IAIIRRKAELLD-----LNLPDEVAEFIANRLKTNIRQLEGAVKKLKALKHLAGSQPSIA 340 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A ++ ++ + + +E I VA Y +S +D+ SN+R + R+VA+Y+ + Sbjct: 341 MAQSVIRDILTDDQPIPITVEKIIAEVANVYGVSPDDIRSNKRSSQISNARKVAIYVVRE 400 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T IG FG RDH+T+++AV + + ++ D +LK+ VE L + I E Sbjct: 401 ITQMPLASIGMEFGGRDHSTIVYAVNSISQSIQKDSSLKELVETLIKNIRE 451 >gi|187479881|ref|YP_787906.1| chromosomal replication initiation protein [Bordetella avium 197N] gi|123765885|sp|Q2KTI9|DNAA_BORA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|115424468|emb|CAJ51022.1| chromosomal replication initiator protein [Bordetella avium 197N] Length = 483 Score = 206 bits (525), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 120/327 (36%), Positives = 183/327 (55%), Gaps = 14/327 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L++ F F+ G +N++A AA +AE Y NPLF++ VGLGKTHL+ A Sbjct: 145 SRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY-----NPLFLYGGVGLGKTHLIHA 199 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I NA + +RV Y+ A+ ++ A + + K ++DLLLIDD+QF GK Sbjct: 200 IGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKN 259 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +++ KQ++ +D P EL +D R+ SR G++V + + EMR + Sbjct: 260 RTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVA 319 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEI 392 IL + + E + + EEV +A+ + ++ REL+GA +++ F L ++ Sbjct: 320 IL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGREALNVDV 374 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L++ ++ +E+IQ+ VA Y I D+ S RR + PRQVAMYL+K + Sbjct: 375 CKEALKDLLSVS-NGQITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKEL 433 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 434 TQKSLPEIGDLFGGRDHTTVLHAVRKI 460 >gi|324999881|ref|ZP_08120993.1| chromosomal replication initiation protein [Pseudonocardia sp. P1] Length = 593 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 212/386 (54%), Gaps = 36/386 (9%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-------------L 158 RS A PS E T SS P + S+ G T P + +P L Sbjct: 199 RSRAYPS-ETTVSSGGWAPQPPSADSGSRD----GGGTSWPAYTAPQAGDPVAPRSQTRL 253 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + R+ F TF+ G+SNR + AA +++E + Y NPLFI GLGKTHLL A+ + Sbjct: 254 NERYTFDTFVIGASNRFSHAAAVAVSEAPARAY-----NPLFIWGESGLGKTHLLHAVGH 308 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + + P +RV Y++ E F F +++RD+ + + R++D+LL+DD+QFL+GK Q Sbjct: 309 YAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDDIQFLEGKEGTQ 368 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L ++ KQ+V ++DRPP LE+L+ R+R+R + G+ + + E R +IL+ Sbjct: 369 EEFFHTFNTLHNANKQIVVSSDRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAILR 428 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIA 393 + A +L + EVL +A + + REL+GA L+ +FA + + ++A Sbjct: 429 KKAAQD-----RLAVPGEVLEFIAERIERNIRELEGA---LIRVTAFASLNRQAVDTQLA 480 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + +L L+ ++ I + A+ + ++ +DL + + + + RQ+AMYL + +T Sbjct: 481 EIVLRDLIPDSAASEITAPTIMAVTAEFFGVTLDDLSGPGKTKALAQARQIAMYLCRELT 540 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKV 479 S P IG+ FG RDHTTV+HA +K+ Sbjct: 541 DLSLPRIGQTFGGRDHTTVMHADKKI 566 >gi|15835165|ref|NP_296924.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270285337|ref|ZP_06194731.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270289353|ref|ZP_06195655.1| chromosomal replication initiation protein [Chlamydia muridarum Weiss] gi|301336734|ref|ZP_07224936.1| chromosomal replication initiation protein [Chlamydia muridarum MopnTet14] gi|14194689|sp|Q9PKB9|DNAA2_CHLMU RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|7190587|gb|AAF39386.1| chromosomal replication initiator protein DnaA [Chlamydia muridarum Nigg] Length = 455 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 137/460 (29%), Positives = 232/460 (50%), Gaps = 33/460 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K + + +W ++ + L +P F+++++ + Y + + + Sbjct: 17 IKTRCSKTAFENWIAPIQVLEESREKIRLEIPNIFVQSYLLDNYKKDLCSFVPLDAEGNP 76 Query: 106 GVEILVRSV--ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +E +V + + P + + + P++ ++S N + F L+ + Sbjct: 77 ALEFVVSEIKRSSPQIAASVTKPAV-EVSEENKD----------------FQLKLNGAYR 119 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ + + Sbjct: 120 FDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLFIHGGVGLGKTHLLHAVGHYVREH 174 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCH 282 NLR+ +T E F+ +R +K+ R++DLLL+DD+QFLQ + + EFC+ Sbjct: 175 HKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCN 234 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 +L+ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +IL+++ Sbjct: 235 TFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWGLVAHVGVPDLETRVAILQHK--- 290 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLV 401 E LNI E+ ++A V + R+L+GA N+L + F LT + L L Sbjct: 291 --AEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELF 348 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 T +K+ +E I + VA + + DL R + V RQVAMYL+K + S IG Sbjct: 349 RTPSKQKVSVESILKSVATVFQVKIQDLKGTSRAKNVPLARQVAMYLAKTLITDSLVAIG 408 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG + H+TVL+A + +E+ +E D LK ++ L K I+ Sbjct: 409 AAFG-KTHSTVLYACKTIEQKIEKDALLKNQISLCKNNIA 447 >gi|262200047|ref|YP_003271255.1| chromosomal replication initiator protein DnaA [Gordonia bronchialis DSM 43247] gi|262083394|gb|ACY19362.1| chromosomal replication initiator protein DnaA [Gordonia bronchialis DSM 43247] Length = 509 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 142/471 (30%), Positives = 245/471 (52%), Gaps = 65/471 (13%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W ++ ++ L+VPT ++ I+ +TI + Q V++ VR +A Sbjct: 37 AWLSLVRPLTLAEGFALLTVPTPLVQEQIERNLRDTIRSALSKHLG--QPVDLGVR-IAT 93 Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP------------------- 157 P E+ + P I + P + +S + + G T +P G+P Sbjct: 94 PPAEEPVAEP-IPAVLPADDGLSAA-LTTGVPTPAP--GAPFRGPGPVDPASERPRPDTG 149 Query: 158 --------------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 L+ ++ F TF+ G+SNR A +A +++E + Y N Sbjct: 150 DWTAYFAERPTTAPAVPSANLNPKYTFDTFVIGASNRFAHASAVAVSEAPARAY-----N 204 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFI GLGKTHLL A + + + P +RV Y++ E F F +++RD+ + K Sbjct: 205 PLFIWGESGLGKTHLLHAAGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRRY 264 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D+LL+DD+QFL GK IQ EF H N+L +++KQ+V ++DRPP +L +L+ R+R+R Sbjct: 265 RDVDVLLVDDIQFLMGKEGIQEEFFHTFNTLHNASKQIVISSDRPPKQLATLEDRLRTRF 324 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+ + D E R +IL+ + + + + ++VL +A + + REL+GA Sbjct: 325 EWGLITDVQPPDLETRIAILRKKAQMD-----NIAVPDDVLELIASKIERNIRELEGA-- 377 Query: 377 QLVFRHSFAPILTAE----IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 L+ +FA + AE +AD +L L+ T ++ I + A++++IS +L Sbjct: 378 -LIRVTAFASLNNAELDKSLADVVLQALLPNSGTLEISAASILAITAEYFDISVEELRGP 436 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + R++ + RQ++MYL + +T S P+IG F DRDHTTV++A RK+ K + Sbjct: 437 GKTRSIAQARQISMYLCRELTDLSLPKIGETF-DRDHTTVMYAERKIRKEM 486 >gi|117927212|ref|YP_871763.1| chromosomal replication initiator protein DnaA [Acidothermus cellulolyticus 11B] gi|117647675|gb|ABK51777.1| chromosomal replication initiator protein DnaA [Acidothermus cellulolyticus 11B] Length = 480 Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 146/459 (31%), Positives = 248/459 (54%), Gaps = 29/459 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +W ++ +++ + L+ P +F K ++ R + E R + + V + Sbjct: 32 YQAWISLIQPLALVEDTAVLAAPHSFAKEVLETRLRPALLAALAAEAGRELRIAVSVETP 91 Query: 115 ALPSVEKTASSPSITKLSPINT--------NISKSPIILGKQTISPVFGSPLDSRFVFST 166 A + E TAS+ + T+ ++ +S I L Q + + L+ ++ F T Sbjct: 92 ADVAAE-TASTSTATEADDVDEMDEAAHEPASGRSSIDLASQRRAHE-AARLNPKYTFET 149 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G+SNR A AA + AE + Y NPLFI+ GLGKTHLL AI + ++ N Sbjct: 150 FVIGASNRFAHAAAFAAAESPAKAY-----NPLFIYGDSGLGKTHLLHAIGHYALSLFGN 204 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +RV Y+++E F F ++IRD A + R++D+LL+DD+QFL+ K Q EF H N Sbjct: 205 IRVRYVSSEEFTNDFINSIRDGKAEGFRRRYRDVDVLLVDDIQFLENKEQTQEEFFHTFN 264 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L ++ KQ+V ++DR P +L +L+ R+R+R + G+ + + E R +IL+ + A Sbjct: 265 TLHNANKQIVISSDRAPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAA---- 320 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLV 401 L+I EVL ++A ++++ REL+GA L+ +FA + + +A+ +L L+ Sbjct: 321 -QEGLDIPNEVLEYIASKISSNIRELEGA---LIRISAFANLNRQRVDLALAEVVLKDLI 376 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 +T ++ I ++ +S DL + R R +V RQVAMYL + +T S P+IG Sbjct: 377 PDSQTPEITAALIMAETGAYFGVSIEDLCGSSRSRVLVTARQVAMYLCRELTDLSLPKIG 436 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 + FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 437 QHFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 475 >gi|6226596|sp|P49990|DNAA_MYCAV RecName: Full=Chromosomal replication initiator protein DnaA gi|3953448|gb|AAC83390.1| DnaA [Mycobacterium avium] Length = 508 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 146/456 (32%), Positives = 246/456 (53%), Gaps = 52/456 (11%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK-LFQEEHSRIQ-GVEIL---- 110 +W ++ +++ LSVP++F++ I+ IT L + +IQ GV I Sbjct: 45 AWLNLVRPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPPD 104 Query: 111 -VRSVALPSVE-------------KTASSPS-----ITKLSPINTN-ISKSPIILGKQTI 150 V +PS E +T S S +T P TN ++ P I Sbjct: 105 DVEDALIPSAEPFPDTDADLSARRRTDSRASGERGAVTNTQPGWTNYFTERP-----HAI 159 Query: 151 SPVF--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P G+ L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI GLG Sbjct: 160 DPAVAAGTSLNRRYTFDTFVIGASNRFAHAAVLAIAEAPARAY-----NPLFIWGESGLG 214 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A N + + P +RV Y++ E F F +++RD+ + K ++R++D+LL+DD+ Sbjct: 215 KTHLLHAAGNYAQRFFPGMRVKYVSTEEFTNDFINSLRDDRKVPFKRTIRDVDVLLVDDI 274 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + Sbjct: 275 QFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPP 334 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 + E R +IL+ + +Q E +L + ++VL +A ++ + REL+GA L+ +FA + Sbjct: 335 ELETRIAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGA---LIRVTAFASL 386 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ T ++ I A++++ + +L + R + + RQ Sbjct: 387 NKTPIDKSLAEIVLRDLIADASTMQISAATIMAATAEYFDTTVVELRGPGKTRALAQSRQ 446 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +AMYL + +T S P+IG+ FG RDHTT+++ RK+ Sbjct: 447 IAMYLCRELTDLSLPKIGQAFG-RDHTTLMYGQRKI 481 >gi|149372330|ref|ZP_01891518.1| chromosomal replication initiator protein [unidentified eubacterium SCB49] gi|149354720|gb|EDM43283.1| chromosomal replication initiator protein [unidentified eubacterium SCB49] Length = 476 Score = 206 bits (524), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 142/487 (29%), Positives = 257/487 (52%), Gaps = 36/487 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ES++T S +++ + + +WF+ + + N + + VP+ F +++ Y+ Sbjct: 5 AESVWTNCLSFIEDNITSQAFKTWFEPIIAVKLTDNALSIQVPSKFFYEFLEEHYV---- 60 Query: 95 KLFQEEHSRIQGVEI-LVRSVAL--------PSVEKTASSPSITKLSPINTNI---SKSP 142 KL + +R G LV ++ + P EK S+ N ++ +KSP Sbjct: 61 KLLKVALTRELGANAKLVYNIKMENTYGNKQPFTEKIPSTNRSNYQGSQNVDVPLKNKSP 120 Query: 143 ------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 +I G + + S L+ + F F+EG SNR+A +A IA + G T+ Sbjct: 121 ELKNPFVIPGIRNVK--IESQLNPNYNFENFLEGESNRLARSAG--IAVANKPGGTS--F 174 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL + SVGLGKTHL AI + P V+Y++AE F+ +++ +++ N + Sbjct: 175 NPLLVFGSVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFVQQYSESVKKNNRNDFIHF 234 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P ++ ++ R+ SR Sbjct: 235 YQIIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMIDIEQRLLSR 294 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+S L DY+ R +I++N+L E P ++++ +A + T+ REL+GA Sbjct: 295 FKWGLSAELNHPDYDTRVAIIQNKLYRDGVEMP-----DDIVEFLANNIKTNIRELEGAI 349 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 L+ SF +T ++A +++ + V + +++ I+ IQ++V+ ++ + + L S R Sbjct: 350 ISLIAHSSFNKKEITIDLAKKIVDNYVKHTK-REVSIDYIQKVVSDYFQMDVDTLQSKTR 408 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K V+ Sbjct: 409 KRHIVQARQLAMFFAKKFTKASLASIGSQIGQRDHATVLHACKTVDNLASTDKQFRKYVD 468 Query: 495 LLKRLIS 501 L++ ++ Sbjct: 469 DLQKKLT 475 >gi|296271546|ref|YP_003654177.1| chromosomal replication initiator protein DnaA [Arcobacter nitrofigilis DSM 7299] gi|296095721|gb|ADG91671.1| chromosomal replication initiator protein DnaA [Arcobacter nitrofigilis DSM 7299] Length = 437 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 137/463 (29%), Positives = 246/463 (53%), Gaps = 43/463 (9%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 S LKN+ Y + ++L + + NI VP ++ WIK++Y +K+ Q Sbjct: 8 SVLKNETSKSDYDRYLKQLIYKKISSDDNIAIFEVPNKYIANWIKSKY----SKIIQHCI 63 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 I G + P+VE + TK + + K+ + + TI L+ Sbjct: 64 ETIDGTK--------PTVEIKLTGEKKTKKEILKEQVGKTDV---ESTI-------LNPS 105 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F +F+ GSSN++A A+ ++++ ++ NPLFI+ GLGKTHLLQAI N +I Sbjct: 106 YTFDSFVVGSSNQMAFNASLAVSKKPG-----IQYNPLFIYGGTGLGKTHLLQAIGNDAI 160 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 + ++Y+T E FM F AI++ + + R D+LLIDD+QFL GK Q EF Sbjct: 161 EH--GRTIIYVTIEQFMNDFTFAIKNKNMEHFRSKYRKCDVLLIDDIQFLSGKEQTQEEF 218 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++ KQ+V +DR PS++ L R++SR + G++ + + E + +I++ + Sbjct: 219 FHTFNELHNAEKQIVMTSDRLPSQIAGLVDRLKSRFEWGLTADVQIPGLETKIAIIEKKS 278 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 ++ +++ E++ ++A + S RE++G L+ ++ A +L EI ++ +L Sbjct: 279 ELNG-----IHLEREIVNYIATNLDNSIREIEGV---LIRINASAALLNQEINLPMVQNL 330 Query: 401 V--NTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + ETK+ +++ DI +VA NI +D+ S +R V R++ +YL++ +T S Sbjct: 331 LKEQIKETKENIKLPDIITIVAIELNIKPSDIKSKKRTAIVANARRIVIYLARELTHNSM 390 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+I + G +DH+++ H ++K +++E D K +E LK I Sbjct: 391 PDIAKFLGMKDHSSISHNIKKANELIEKDENFKLIIENLKNKI 433 >gi|269216526|ref|ZP_06160380.1| DNA replication initiator protein, ATPase [Slackia exigua ATCC 700122] gi|269130055|gb|EEZ61137.1| DNA replication initiator protein, ATPase [Slackia exigua ATCC 700122] Length = 516 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 144/497 (28%), Positives = 254/497 (51%), Gaps = 63/497 (12%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR---- 112 ++F R+ + + + TNF+K ++ RY + + +E + G++ L+ Sbjct: 31 AFFSRVHPQATSEGFLIATAETNFIKEQVEKRYSNAMKRALKE----LTGMDYLIEIEVD 86 Query: 113 ---------------SVALPS-VEKTASSPSIT---KLSPINTNISKSPIILGKQTISPV 153 A+PS E+T SP+ + +T IS+ P+ + S Sbjct: 87 ESFIASAAQVRPQSSGDAIPSHTEQTPPSPASQPHPSTAGTDTQISEPPLDRDRSISSNH 146 Query: 154 FGSPLD--------------SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + D S F ++ G SNR+A + A ++AE LNPL Sbjct: 147 METSADPSRMKGSGSYSGIVSSLTFENYVIGDSNRLAYSMALAVAEQPG---VKPMLNPL 203 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI----RDNCAL-NLK 254 FI+ + GLGKTHLL+AI N P + VY+ + F+ + +A+ +D + + + Sbjct: 204 FIYGNSGLGKTHLLRAIQNYINATYPTMDAVYVDSSEFLNDYTAAVASHDKDKKSYQDFQ 263 Query: 255 DSLRNIDLLLIDDMQFLQGKLIQHEFC-HLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + N D+L+IDD+QF QGK + LLN L+D KQVV +ADR P ++ +D R++ Sbjct: 264 NRYWNADVLIIDDVQFFQGKSATVDIVFQLLNKLIDRGKQVVLSADRAPKTID-VDERMQ 322 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE--DPKLNINEEVLMHVARTVTTSGREL 371 SR G + + + E + I+K+ +A ++ + +I ++V M++A +++ REL Sbjct: 323 SRFNQGGTFDIQPPEVETKLGIIKSFIAEHRRASGEDTASIPKDVQMYIAENSSSNVREL 382 Query: 372 DGA----FNQLVF--RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 A +++++ R F + E A ELL+ ++G TKK + IQ +V ++Y +S Sbjct: 383 KSAVTRVLSEIIYKGRKDF----SVEDAQELLADHFSSGATKKADVATIQHVVEQYYKVS 438 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 DL+ +R R +V RQ+A+YLS+ M F IG++FG RDH+T++H+V+ VE + Sbjct: 439 HADLVGVKRSRNIVYARQIAIYLSRNMLDVPFASIGKKFGQRDHSTIMHSVKAVEDKMRK 498 Query: 486 DITLKKEVELLKRLISE 502 D ++ E+E++ ++I E Sbjct: 499 DKEIRDEIEIITKMIRE 515 >gi|260174144|ref|ZP_05760556.1| chromosomal replication initiation protein [Bacteroides sp. D2] gi|315922409|ref|ZP_07918649.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696284|gb|EFS33119.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 470 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 142/485 (29%), Positives = 255/485 (52%), Gaps = 39/485 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCL+V +K+ V Y +WF + + L +P+ F ++ R Sbjct: 12 RCLDV------------IKDNVPETTYNTWFAPIVPLKYEDKTLILQIPSQFFYEILEER 59 Query: 89 YLETITKLFQE---EHSRIQGVEILVRSVALPS----VEKTASSPSITKLSPINTNISKS 141 +++ I K + E +++ ++V ++P+ +E + S ++T S I N K+ Sbjct: 60 FVDLIRKTLYKVIGEGTKLM-YNVMVDKTSIPNQTVNLEASNRSTAVTPKSIIGGN--KA 116 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P L + + L+ + F FIEG SN+++ + A+++A+ G T NPLF+ Sbjct: 117 PSFLQAPAVQDL-DPHLNPNYNFENFIEGYSNKLSRSVAEAVAQ--KPGGTA--FNPLFL 171 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + + G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID Sbjct: 172 YGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTID 231 Query: 262 LLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 232 VLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGM 291 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 L E+R +IL+N++ + P EV+ ++A V S R+L+G ++ Sbjct: 292 VAELEKPTVELRKNILRNKIHRDGLQFPA-----EVIDYIAENVNESVRDLEGIVIAIMA 346 Query: 381 RHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 R + I EI +L H+V+ ETK + I+DI ++V KH+++ + + + R R Sbjct: 347 R---STIFNKEIDLDLAQHIVHGVVHNETKAVTIDDILKVVCKHFDLEPSAIHTKSRKRE 403 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ+AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + EV+ ++ Sbjct: 404 VVQARQIAMYLAKNHTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFNAEVQEIE 463 Query: 498 RLISE 502 L+ + Sbjct: 464 SLLKK 468 >gi|154483923|ref|ZP_02026371.1| hypothetical protein EUBVEN_01629 [Eubacterium ventriosum ATCC 27560] gi|149735414|gb|EDM51300.1| hypothetical protein EUBVEN_01629 [Eubacterium ventriosum ATCC 27560] Length = 462 Score = 206 bits (523), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 132/458 (28%), Positives = 235/458 (51%), Gaps = 35/458 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKA---WIKNRYLETITKLFQEEHSRIQGVEILV 111 + +W L+ S +N++ L P K +I +YL + +E ++ ++I++ Sbjct: 27 FKTWILPLEVESFENNMITLVFPGESGKTGLQYINKKYLALLKISIEETLNQELELQIIL 86 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 + + +E +S S ++S+ I L + + + L+ ++ F +F+ GS Sbjct: 87 PNETVSKIEDESSKIS---------SVSQEDISLENR----ILDANLNKKYTFDSFVVGS 133 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 +N +A + ++AE Y NPLFI+ VGLGKTHL+Q+I N +K P+ +V+Y Sbjct: 134 NNNIAQVTSLAVAESPGDVY-----NPLFIYGGVGLGKTHLIQSIGNFVLKNNPSAKVLY 188 Query: 232 LTAEYFMWRFASAIRDNCA-----LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 T+E F +R + + R++D+LLIDD+QF+ G+ Q E ++ N Sbjct: 189 TTSESFTNEVIDLLRKKKTNQEEIIEFRKKYRSVDVLLIDDIQFISGRDRTQEEIFNIFN 248 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L KQ+V +D+ P ++E + R+ SR + G++V + DYE R +ILK + Sbjct: 249 DLFMKHKQIVLTSDKKPKDMEGIAERLISRFEQGLTVDIQNPDYETRMAILKKK-----A 303 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPILTAEIADELLSHLVNT 403 E NI+E VL ++A ++ REL+G+ +++ + S +PI T + A +L LV Sbjct: 304 ETSGYNIDEGVLQYIANHFVSNVRELEGSLTRVITFSKISHSPI-TVDFASGVLQELVAP 362 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + + E I +VA H+ IS D+ S ++ R PRQ+ MYL ++ T IG Sbjct: 363 NQENAITCEYIINIVADHFQISPTDICSKKKSREFAYPRQICMYLCRVFTDEKLETIGAA 422 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +H TV + K++ +ETD + +++LK+ I+ Sbjct: 423 LKKTNHATVSYGYDKIKSEIETDSKTRDLIDVLKKKIN 460 >gi|227506187|ref|ZP_03936236.1| chromosomal replication initiation protein [Corynebacterium striatum ATCC 6940] gi|227197211|gb|EEI77259.1| chromosomal replication initiation protein [Corynebacterium striatum ATCC 6940] Length = 537 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 194/346 (56%), Gaps = 14/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ GSSNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 197 LNPKHTFENFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAG 251 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P LRV Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Sbjct: 252 NYAQLLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKEST 311 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 312 QEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 371 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + A E ++ VL +A +S REL+GA ++ S PI + E+A+ Sbjct: 372 MKKAAADGTE-----VDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-SLEMAE 425 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L L +++ I + A+++NI L + R V RQ+AMYL + +T Sbjct: 426 IALHDLAPDSAGREITATAIMEVTAEYFNIDVETLRGAGKKRAVAHARQLAMYLCRELTE 485 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG +FG +DHTTV++A RK+ K + + E++ L + I Sbjct: 486 LSLPKIGDQFGGKDHTTVIYADRKIRKEMTENRNTYDEIQALTQRI 531 >gi|255691401|ref|ZP_05415076.1| ATPase [Bacteroides finegoldii DSM 17565] gi|260623047|gb|EEX45918.1| ATPase [Bacteroides finegoldii DSM 17565] Length = 473 Score = 206 bits (523), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 146/483 (30%), Positives = 253/483 (52%), Gaps = 39/483 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCL++ +K+ V Y +WF + ++L +P+ F ++ R Sbjct: 12 RCLDI------------IKDNVPDTTYNTWFAPIVPLKYEDKTLYLQIPSQFFYEILEER 59 Query: 89 YLE----TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT-NISKSPI 143 +++ T+ K+ E + V + S+ +V AS+ S T ++P N + +K+P Sbjct: 60 FVDLIRKTLYKVIGEGTKLMYNVMVDKTSIPNQTVNLEASNRS-TAVTPKNIFDGNKAPN 118 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 L + + L+ + F FIEG SN+++ + A+++A G T NPLF++ Sbjct: 119 FLQAPAVQDL-DPHLNPNYNFENFIEGYSNKLSRSVAEAVAL--KPGGTA--FNPLFLYG 173 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID+L Sbjct: 174 ASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVL 233 Query: 264 LIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 234 IIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVA 293 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 L E+R +IL+N++ + P EEV+ ++A V S R+L+G ++ R Sbjct: 294 ELEKPTVELRKNILRNKIHRDGLQFP-----EEVIDYIAENVNESVRDLEGIVIAIMAR- 347 Query: 383 SFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + I EI +L H+V+ ETK + I+DI ++V KH+++ + + R R VV Sbjct: 348 --STIFNKEIDMDLAQHIVHGVVHNETKAVTIDDILKVVCKHFDLEPAAIHTKSRKREVV 405 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE----L 495 + RQ+AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + EV+ L Sbjct: 406 QARQIAMYLAKNHTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFNAEVQEIEAL 465 Query: 496 LKR 498 LKR Sbjct: 466 LKR 468 >gi|126660126|ref|ZP_01731245.1| chromosomal replication initiation protein [Cyanothece sp. CCY0110] gi|126618569|gb|EAZ89319.1| chromosomal replication initiation protein [Cyanothece sp. CCY0110] Length = 456 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 147/477 (30%), Positives = 245/477 (51%), Gaps = 38/477 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + I+ V RLK ++ P + +W + N + + V F I N Sbjct: 1 MTISPQYIWNQVLDRLKMRLNPTAFETWLASATVQTFQDNCLVIQVENPF----ILNHLQ 56 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPS-----VEKTASSPSITKLSPINTNISKSPIIL 145 +T L EE I G I V+ V+K + S KL+ N +SP + Sbjct: 57 KTYYSLIVEEVETIVGYSISVKLTTSQEQNWKIVDKDEYNYSSNKLN--NKTDKQSPKL- 113 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 S L+ + FS F+ G +NR+A A+ ++AE + NPLF+ V Sbjct: 114 ----------SQLNPHYNFSRFVVGPTNRMAHAASLAVAESPGREF-----NPLFLCGGV 158 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAIA+ ++ PN V Y++ E F ++IR + + ++ R D+LL+ Sbjct: 159 GLGKTHLMQAIAHYRLELYPNANVFYVSTEQFTNDLITSIRQDSMEHFREHYRTADILLV 218 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF++GK Q EF H N+L ++ KQVV A+DRPP + SL R+ SR G+ + Sbjct: 219 DDIQFIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKRIPSLQDRLVSRFSMGLIADI 278 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + D E R +IL+ + E + + +V+ ++A T++ REL+GA + V ++ Sbjct: 279 QVPDLETRMAILQKK-----AEYENIVLPRDVIEYIATNYTSNIRELEGALIRAV---TY 330 Query: 385 APILTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 I + E ++ ++N E + + I +++A+++N+S DL + R R + RQ Sbjct: 331 ISISGLSMTVENIAPVLNPPMEQISVSPDVIIKIIAENFNVSIEDLKGSSRRREISLARQ 390 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 + MYL + T S P IG FG +DHTTVL++ K+ K+ + D L +++ EL R+ Sbjct: 391 IGMYLMRQHTDLSLPRIGEEFGGKDHTTVLYSCDKISKLQKKDWDLSQQLSELSDRI 447 >gi|332524901|ref|ZP_08401087.1| chromosomal replication initiation protein [Rubrivivax benzoatilyticus JA2] gi|332108196|gb|EGJ09420.1| chromosomal replication initiation protein [Rubrivivax benzoatilyticus JA2] Length = 349 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/349 (35%), Positives = 191/349 (54%), Gaps = 21/349 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F T + G +N++A TAA +A Y NPLFI+ VGLGKTHL+ A+ Sbjct: 14 LNPSLTFDTLVPGRANQMARTAALHVAGAPGQMY-----NPLFIYGGVGLGKTHLVHAVG 68 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NA +K +P+ RV+YL AE F+ + LK ++DLLLIDD+QF GK Sbjct: 69 NALLKDRPDARVLYLHAEQFISDVVKNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKDRT 128 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q F + +LL ++ +D P L +D R+ SR G++V + + EMR +IL Sbjct: 129 QEVFFNTFEALLAKRAHIIMTSDTYPKGLVDIDERLTSRFDAGLTVAIEPPELEMRVAIL 188 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-----ILTAE 391 + E P E+V +A+ V + REL+GA +++ F+ LT + Sbjct: 189 IKKALAEGAEMP-----EDVAFFIAKNVRANVRELEGALRKVLAYSRFSQKDINIALTRD 243 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +LLS + +++ +E+I + VA Y I D+ S +R ++ RPRQ+AMYL+K Sbjct: 244 ALKDLLSI-----QNRQISVENILKTVADFYKIKVADMYSKKRPASIARPRQIAMYLAKD 298 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MT +S PEIG FG RDHTTVLHAVRK+ + + L +++ +L++ + Sbjct: 299 MTKKSLPEIGELFGGRDHTTVLHAVRKIADERQRNSELNQQLHVLEQTL 347 >gi|160885204|ref|ZP_02066207.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483] gi|237714833|ref|ZP_04545314.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1] gi|237720012|ref|ZP_04550493.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 2_2_4] gi|262406895|ref|ZP_06083444.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_22] gi|293368855|ref|ZP_06615459.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CMC 3f] gi|294643068|ref|ZP_06720907.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CC 2a] gi|294807803|ref|ZP_06766593.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens SD CC 1b] gi|298479865|ref|ZP_06998065.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22] gi|299147890|ref|ZP_07040953.1| ATPase involved in DNA replication initiation [Bacteroides sp. 3_1_23] gi|156109554|gb|EDO11299.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483] gi|229445158|gb|EEO50949.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1] gi|229450564|gb|EEO56355.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 2_2_4] gi|262355598|gb|EEZ04689.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_22] gi|292636160|gb|EFF54648.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CMC 3f] gi|292641587|gb|EFF59766.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CC 2a] gi|294445000|gb|EFG13677.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens SD CC 1b] gi|295084766|emb|CBK66289.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens XB1A] gi|298274255|gb|EFI15816.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22] gi|298514073|gb|EFI37959.1| ATPase involved in DNA replication initiation [Bacteroides sp. 3_1_23] Length = 470 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 142/485 (29%), Positives = 255/485 (52%), Gaps = 39/485 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCL+V +K+ V Y +WF + + L +P+ F ++ R Sbjct: 12 RCLDV------------IKDNVPETTYNTWFAPIVPLKYEDKTLILQIPSQFFYEILEER 59 Query: 89 YLETITKLFQE---EHSRIQGVEILVRSVALPS----VEKTASSPSITKLSPINTNISKS 141 +++ I K + E +++ ++V ++P+ +E + S ++T S I N K+ Sbjct: 60 FVDLIRKTLYKVIGEGTKLM-YNVMVDKTSIPNQTVNLEASNRSTAVTPKSIIGGN--KA 116 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P L + + L+ + F FIEG SN+++ + A+++A+ G T NPLF+ Sbjct: 117 PSFLQAPAVQDL-DPHLNPNYNFENFIEGYSNKLSRSVAEAVAQ--KPGGTA--FNPLFL 171 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + + G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID Sbjct: 172 YGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTID 231 Query: 262 LLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 232 VLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGM 291 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 L E+R +IL+N++ + P EV+ ++A V S R+L+G ++ Sbjct: 292 VAELEKPTVELRKNILRNKIHRDGLQFPP-----EVIDYIAENVNESVRDLEGIVIAIMA 346 Query: 381 RHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 R + I EI +L H+V+ ETK + I+DI ++V KH+++ + + + R R Sbjct: 347 RST---IFNKEIDLDLAQHIVHGVVHNETKAVTIDDILKVVCKHFDLEPSAIHTKSRKRE 403 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ+AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + EV+ ++ Sbjct: 404 VVQARQIAMYLAKNHTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFSAEVQEIE 463 Query: 498 RLISE 502 L+ + Sbjct: 464 SLLKK 468 >gi|218512792|ref|ZP_03509632.1| chromosomal replication initiation protein [Rhizobium etli 8C-3] Length = 147 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 94/146 (64%), Positives = 120/146 (82%) Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 +ESLDPR+RSRLQGGV++ L DYEMR ILK RLA +++EDP L I ++L HVAR + Sbjct: 1 MESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRRLAAARQEDPSLEIPADLLQHVARNI 60 Query: 365 TTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 T SGREL+GAFNQL+FR SF P L+ E DELL+HLV +GE +++RIEDIQR+VA+HYN+ Sbjct: 61 TASGRELEGAFNQLIFRRSFEPNLSIERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNV 120 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSK 450 SR +L+SNRR R +V+PRQ+AMYLSK Sbjct: 121 SRQELVSNRRTRVIVKPRQIAMYLSK 146 >gi|291285948|ref|YP_003502764.1| chromosomal replication initiator protein DnaA [Denitrovibrio acetiphilus DSM 12809] gi|290883108|gb|ADD66808.1| chromosomal replication initiator protein DnaA [Denitrovibrio acetiphilus DSM 12809] Length = 446 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 139/463 (30%), Positives = 235/463 (50%), Gaps = 36/463 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 SI+ V L++++ +W + L + +++ LS P F K W +++L+ I K+ Sbjct: 5 SIWEEVLKNLQSELDESEIKTWLEPLTIAELRGDMITLSAPNKFYKKWTDDKFLKHIKKV 64 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F V ++V V P ++ AS P+ +P+ + K GS Sbjct: 65 FNNTLGIDADVTVVVGGVKKPHTQEAASVPA------------GAPVYVHKN------GS 106 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ + F+ F+ G SN + +A ++++E Y NPLFI+ GLGKTHL+ A+ Sbjct: 107 GLNRDYTFANFVAGGSNEFSFSACEAVSEGQFMQY-----NPLFIYGGSGLGKTHLMHAV 161 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 N +++ P ++V+Y+T+E F +++R + R ID+LL DD+QFL GK Sbjct: 162 GNRILEKFPKMKVLYITSETFTNDMINSLRTRKMEEFQARYRTIDVLLFDDVQFLSGKQR 221 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 EF + N+L D+ KQ++ +D+ P+E+ ++ R++SR G+ + E + +I Sbjct: 222 STEEFFNTFNALYDNQKQIIITSDKTPAEIPDMEDRLKSRFAWGLIADIQPPSTEEKTAI 281 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSG-RELDGAFNQLVFRHSFAP-ILTAEIA 393 L R E L + EV + +A + T REL GA +L SF LT ++A Sbjct: 282 LMKR-----AEFMGLKLPGEVALFIAENMITENVRELMGALVRLSAFASFHKRGLTIDLA 336 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L + + K + +DI V K++N+ DL S +R +++ PRQ+AMY+ + Sbjct: 337 KDALDKFI-VKKDKMVSSDDIVNAVCKYFNVKMADLRSKKRTKSISFPRQIAMYMLREKL 395 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S E+G FG RDH+TVLHAV + E KE++L+ Sbjct: 396 NLSLQEVGSIFGGRDHSTVLHAVNSIAGKHEE----SKEIQLI 434 >gi|332531209|ref|ZP_08407122.1| chromosomal replication initiation protein [Hylemonella gracilis ATCC 19624] gi|332039316|gb|EGI75729.1| chromosomal replication initiation protein [Hylemonella gracilis ATCC 19624] Length = 477 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 200/345 (57%), Gaps = 13/345 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++ F T +EG++NR+A AA +A Y NPLFI+ S GLGKTHL+ A+ Sbjct: 142 LNTALTFDTLVEGTANRMARAAAMHVAGSPGQLY-----NPLFIYGSTGLGKTHLIHAVG 196 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + +P +V+Y AE+F+ A + KD ++DLLLIDD+QF GK Sbjct: 197 NRLLAEKPGAKVLYTHAEWFVTDVVKAYQRKTFDEFKDKYHSLDLLLIDDVQFFAGKDRT 256 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR +IL Sbjct: 257 QEEFFNAFEALLAKKSHIVMTSDTYPKGLLDINQRLVSRFDSGLTVAIEPPELEMRVAIL 316 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 N+ +Q E ++ EEV VA+ V ++ REL+GA +++ F ++ ++A E Sbjct: 317 INK---AQSEGA--SMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLARE 371 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L++ + +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K +T + Sbjct: 372 ALRDLLSI-QNRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKELTQK 430 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 431 SLPEIGELFGGRDHTTVLHAVRKISGERQQLTELNQQLHVLEQTL 475 >gi|306834799|ref|ZP_07467863.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] gi|304569327|gb|EFM44828.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] Length = 566 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 193/346 (55%), Gaps = 14/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F +F+ GSSNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 226 LNPKHTFESFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAG 280 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P LRV Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Sbjct: 281 NYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKEST 340 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 341 QEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 400 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + A E ++ VL +A +S REL+GA ++ S PI E+A+ Sbjct: 401 MKKAAADGTE-----VDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-NVEMAE 454 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L L +++ I + A++++I L + R V RQ+AMYL + +T Sbjct: 455 IALRDLAPDSADRQITAASIMEVTAEYFDIDVETLRGAGKKRAVAHARQLAMYLCRELTE 514 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG +FG +DHTTV++A RK+ K + E++ L + I Sbjct: 515 LSLPKIGEQFGGKDHTTVIYADRKIRKEMTEKRNTYDEIQSLTQRI 560 >gi|314917480|gb|EFS81311.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA1] Length = 474 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/340 (36%), Positives = 195/340 (57%), Gaps = 18/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 TI G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ G+G Sbjct: 128 TIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGVG 182 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KT LL I + N++V Y++ E F +AI N + S R++D+LL+DD+ Sbjct: 183 KTPLLHGIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDI 242 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ K+ Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + Sbjct: 243 QFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPP 302 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ ++A K+ + +VL +A + T+ REL+GA L+ +FA + Sbjct: 303 DLETRIAILRRKVAAE-----KITVEPDVLEFIASRIQTNIRELEGA---LIRVTAFASL 354 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ Sbjct: 355 NQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQ 414 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 415 IAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALM 454 >gi|269793359|ref|YP_003312814.1| chromosomal replication initiator protein DnaA [Sanguibacter keddieii DSM 10542] gi|269095544|gb|ACZ19980.1| chromosomal replication initiator protein DnaA [Sanguibacter keddieii DSM 10542] Length = 490 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 201/348 (57%), Gaps = 19/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 150 LNPKYLFETFVIGSSNRFAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 204 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P +RV Y+ +E F F ++IRD A + R +D LLIDD+QFLQGK Sbjct: 205 HYAYNLYPGVRVKYVNSEEFTNDFINSIRDEKAGAFQRRYREVDFLLIDDIQFLQGKEQT 264 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N+L ++ KQVV +D PP +L + R+RSR + G+ + D E R +IL Sbjct: 265 MEEFFHTFNTLHNANKQVVITSDLPPKQLNGFEDRLRSRFEWGLITDVQPPDLETRIAIL 324 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + + +L ++VL ++A ++++ REL+GA L+ +FA + + + Sbjct: 325 RKKAS-----GERLAAPDDVLEYIASKISSNIRELEGA---LIRVTAFANLNRQQVDLAL 376 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ + ++ + A ++ ++ +DL + R R +V RQ+AMYL + + Sbjct: 377 AEIVLKDLITDDDASQITAGSVIAQTAAYFGLTIDDLCGSSRSRVLVTARQIAMYLCREL 436 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 T S P+IG++FG RDHTTV+HA RK+ E+M E T + EL R+ Sbjct: 437 TDLSLPKIGQQFGGRDHTTVMHANRKITEQMAERRSTFNQVTELTSRI 484 >gi|300934349|ref|ZP_07149605.1| chromosomal replication initiation protein [Corynebacterium resistens DSM 45100] Length = 584 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/356 (34%), Positives = 204/356 (57%), Gaps = 15/356 (4%) Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 GK+T S L+ + F TF+ GSSN A A +++AE + Y NPLFI Sbjct: 237 GKETESETL---LNKNYTFETFVIGSSNNFANAACRAVAESPAKAY-----NPLFIWGES 288 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL AI + + + +PN+RV Y+++E F ++I + K RN+D+L++ Sbjct: 289 GLGKTHLLHAIGHYAKELRPNMRVRYVSSEELTNDFINSIATDTREAFKRRYRNVDMLIV 348 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL+GK Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R +GG++ + Sbjct: 349 DDIQFLEGKESTQEEFFHTFNALHQANKQIVLSSDRPPKKLTTLEDRLRTRFEGGLTTDV 408 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL + + + P E+V +A TS R L+GA +++ S Sbjct: 409 TSPDLETRIAILSKKAQLEGIQLP-----EDVKQLIANRYDTSIRVLEGALIRVIAYCSL 463 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + A E+ +N G T ++ + + +VA ++N++ ++L+ R R V+ RQ+ Sbjct: 464 GDEPISLEAAEVALRDINNG-TVEVTPQAVIEVVAHYFNLTTDELVGKGRSRRFVQARQI 522 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYL + +T S P++G FG RDHTTV++A R++ + L + + +V+ L + I Sbjct: 523 AMYLCRELTDLSLPKLGAAFGGRDHTTVMYAERRIRESLTENKKVFDQVQELTQKI 578 >gi|256823906|ref|YP_003147866.1| chromosomal replication initiator protein DnaA [Kytococcus sedentarius DSM 20547] gi|256687299|gb|ACV05101.1| chromosomal replication initiator protein DnaA [Kytococcus sedentarius DSM 20547] Length = 506 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 129/350 (36%), Positives = 202/350 (57%), Gaps = 18/350 (5%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL A Sbjct: 162 SALNHKYTFDTFVLGSSNRFAHAAATAVAEAPARAY-----NPLFIYGGSGLGKTHLLHA 216 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + + ++RV Y+ +E F +F +A+ A + R++D+LLIDD+QFLQGK Sbjct: 217 IGHYARTLDSSVRVKYVNSEEFTNQFINAVSAGQANAFQRQYRDVDVLLIDDIQFLQGKE 276 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF H N+L +S KQ+V +D+PP +L R+RSR + G+ + D E R + Sbjct: 277 QTMEEFFHTFNTLHNSEKQIVITSDQPPKKLSGFAERMRSRFEWGLLTDVQPPDLETRIA 336 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 IL+ + A KL+I ++VL +A ++++ REL+GA ++ +FA + L Sbjct: 337 ILRRKAAAD-----KLDIPDDVLHLIASKISSNIRELEGALTRVT---AFASLSGSPLDE 388 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A +L ++ G++ ++ I A ++ IS ++ R R + R RQ+AMYL + Sbjct: 389 YLARTVLKDVMPGGDSGQITPTMILEETAGYFVISVEEIQGASRSRNLTRARQIAMYLCR 448 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG+ FG RDHTTV+HA RK++++L D + EV L +I Sbjct: 449 ELTDLSLPKIGKEFGGRDHTTVMHAERKIKQLLGEDRRVYDEVSELTSII 498 >gi|153808748|ref|ZP_01961416.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185] gi|149128574|gb|EDM19792.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185] Length = 470 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 142/485 (29%), Positives = 254/485 (52%), Gaps = 39/485 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLEV +K+ V Y +WF + + L +P+ F ++ R Sbjct: 12 RCLEV------------IKDNVPETTYNTWFAPIVPLKYEDKTLILQIPSQFFYEILEER 59 Query: 89 YLETITKLFQE---EHSRIQGVEILVRSVALPS----VEKTASSPSITKLSPINTNISKS 141 +++ I K + E +++ ++V ++P+ +E + S ++T S N K+ Sbjct: 60 FVDLIRKTLYKVIGEGTKLM-YNVMVDKTSIPNQTVNLEASNRSTAVTPKSIFGAN--KA 116 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P L + + L+ + F FIEG SN+++ + A+++A+ G T NPLF+ Sbjct: 117 PNFLQAPAVQDL-DPHLNPNYNFENFIEGYSNKLSRSVAEAVAQ--KPGGTA--FNPLFL 171 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + + G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID Sbjct: 172 YGASGVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTID 231 Query: 262 LLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 232 VLIIDDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGM 291 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 L E+R +IL+N++ + P EV+ ++A V S R+L+G ++ Sbjct: 292 VAELEKPTVELRKNILRNKIHRDGLQFPP-----EVIDYIAENVNESVRDLEGIVIAIMA 346 Query: 381 RHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 R + I EI +L H+V+ ETK + I+DI ++V KH+++ + + + R R Sbjct: 347 RST---IFNKEIDLDLAQHIVHGVVHNETKAVTIDDILKVVCKHFDLEPSAIHTKSRKRE 403 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ+AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + EV+ ++ Sbjct: 404 VVQARQIAMYLAKNHTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFHAEVQEIE 463 Query: 498 RLISE 502 L+ + Sbjct: 464 SLLKK 468 >gi|145592567|ref|YP_001156864.1| chromosomal replication initiator protein DnaA [Salinispora tropica CNB-440] gi|145301904|gb|ABP52486.1| chromosomal replication initiator protein DnaA [Salinispora tropica CNB-440] Length = 587 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 138/407 (33%), Positives = 215/407 (52%), Gaps = 26/407 (6%) Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E H R +G + ALP T S P P + P G+ L Sbjct: 197 EAHYRAEGADQHG-GRALPRELGTDSGPGRVDHRPGGREDRRPPAPADGG------GNRL 249 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + +++F TF+ GSSNR A A+ ++AE + Y NPLFI+ S GLGKTHLL AI + Sbjct: 250 NPKYMFETFVIGSSNRFAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLHAIGH 304 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + V Y++ E F F +++RD+ + R++D+LLIDD+QFL+ + Q Sbjct: 305 YATTLGNANSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQ 364 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E R +IL+ Sbjct: 365 EEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQ 424 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----A 393 + A +L +VL +A V+ S REL+GA L+ +FA + + + A Sbjct: 425 KKAAQE-----RLFAPPDVLEFIASRVSNSIRELEGA---LIRVTAFASLTRSSVELSLA 476 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 +E+L + G ++ + I A ++ +S DL + R R +V RQVAMYL + +T Sbjct: 477 EEVLRDFIPDGTGPEITADQIMVATADYFGVSLEDLRGHSRSRVLVNARQVAMYLCRELT 536 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 S P IG+ FG RDHTTV+HA RK+ + + +L ++ EL R+ Sbjct: 537 DLSLPRIGQAFGGRDHTTVMHADRKIRQQMAERRSLYNQIAELTNRI 583 >gi|42521651|ref|NP_967031.1| chromosomal replication initiator protein dnaA [Bdellovibrio bacteriovorus HD100] gi|61212608|sp|Q6MRS1|DNAA_BDEBA RecName: Full=Chromosomal replication initiator protein DnaA gi|39574181|emb|CAE77685.1| chromosomal replication initiator protein dnaA [Bdellovibrio bacteriovorus HD100] Length = 471 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/349 (35%), Positives = 204/349 (58%), Gaps = 21/349 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAE---VDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+S FSTF+ G ++ A A ++A D + NPL+I+ VG+GKTHLL Sbjct: 132 LNSELTFSTFVVGKNSEFAHAACYNVARNPGADDY-------NPLYIYGPVGMGKTHLLH 184 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFL-Q 272 A N ++ +LR+ Y++AE FM SAIR + + R N D+LL+DD+QF+ + Sbjct: 185 AAGNHIREQYQHLRITYISAERFMNECISAIRRHEMDKFRQKYRENSDILLVDDVQFIAR 244 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 G+ +Q EF H +NS +DS KQV+ A+DR P ++ L+ R R+RL+ G+ + + D E R Sbjct: 245 GEAVQEEFFHTVNSFIDSRKQVILASDRMPKDIHGLEDRSRTRLERGLIADITMPDLETR 304 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +IL+ + E + + E+V+ ++AR S REL+G ++ F+ + I Sbjct: 305 IAILRYK-----AEKYNVRLPEDVVNYIARISKRSIRELEGNLKKVKM---FSELQGLPI 356 Query: 393 ADELLSHLVNTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 EL+ ++ ET+ + +E+I ++VA H+ + DL S+ R + +V PRQ+AMYL K Sbjct: 357 DHELVKRILAHHETQSTISVEEIMKLVADHFKVRVLDLKSSTRAKPIVVPRQIAMYLIKK 416 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S +IG+ FG +DHTTV++A+ +V+ + D + K++E L++ I Sbjct: 417 FLDKSLVDIGKSFGGKDHTTVMNALERVKNLQAADQDIAKDIEDLEQRI 465 >gi|319788988|ref|YP_004150621.1| chromosomal replication initiator protein DnaA [Thermovibrio ammonificans HB-1] gi|317113490|gb|ADU95980.1| chromosomal replication initiator protein DnaA [Thermovibrio ammonificans HB-1] Length = 471 Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 149/467 (31%), Positives = 242/467 (51%), Gaps = 36/467 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S LK +V P ++ S F+ +K + L V + LK I+ + + + +E + Sbjct: 10 SELKKRVKPSLFKSAFKDMKLAERSDERILLQVKDSVLKEVIE----KNLRPVVEEAAKK 65 Query: 104 IQGVEILVRSVALP-SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 + G P VE T S + P + + Q S L+ ++ Sbjct: 66 VFG----------PVKVEFTVPSEPVKTPQPQQLELG---LFKKSQKKEEELQSNLNPKY 112 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F FI G+SN+ A AA ++AE Y NPLFI+ VGLGKTHL+QAI N K Sbjct: 113 TFENFIVGTSNQFAHAAALAVAENPGKAY-----NPLFIYGGVGLGKTHLMQAIGNYIKK 167 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 + P +V+Y+T E FM + A++ + + ++ RNID+LLIDD+QF+ GK Q EF Sbjct: 168 KSPWKKVIYVTTETFMNQLIEALKSDNISSFREKYRNIDVLLIDDIQFIGGKERTQIEFF 227 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L D+ KQVV +DRPP ++ +L R+RSR + G+ + D+E R +ILK + Sbjct: 228 HTFNALYDAGKQVVLTSDRPPKDIPTLTERLRSRFEWGLIADIQPPDFETRVAILKRKAE 287 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSH 399 + + ++++V+ +A + ++ R+L+GA +L + + PI T + EL S Sbjct: 288 LE-----GIEVSDKVIKLIATIIKSNIRQLEGALIKLKAKATLEGKPI-TERLVRELFSQ 341 Query: 400 ----LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +++ ++ I+ V+ + + LLS+ R + V RQVAMYL+K + Sbjct: 342 ESPEERAEKRRREISLKLIKTTVSSEFGVDEELLLSSSRKKQVALARQVAMYLAKRIGNY 401 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +I F DHTTVLHAVRKVE++ + D + + +E L+ + E Sbjct: 402 PYTQIAAAFNRDDHTTVLHAVRKVEELRKRDEKINQLLEKLELKVRE 448 >gi|227502242|ref|ZP_03932291.1| chromosomal replication initiation protein [Corynebacterium accolens ATCC 49725] gi|227077066|gb|EEI15029.1| chromosomal replication initiation protein [Corynebacterium accolens ATCC 49725] Length = 382 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 193/346 (55%), Gaps = 14/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F +F+ GSSNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 42 LNPKHTFESFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAG 96 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P LRV Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Sbjct: 97 NYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKEST 156 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 157 QEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 216 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + A E ++ VL +A +S REL+GA ++ S PI E+A+ Sbjct: 217 MKKAAADGTE-----VDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-NVEMAE 270 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L L +++ I + A++++I L + R V RQ+AMYL + +T Sbjct: 271 IALRDLAPDSADRQITAASIMEVTAEYFDIDVETLRGAGKKRAVAHARQLAMYLCRELTE 330 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG +FG +DHTTV++A RK+ K + E++ L + I Sbjct: 331 LSLPKIGEQFGGKDHTTVIYADRKIRKEMTEKRNTYDEIQSLTQRI 376 >gi|262193327|ref|YP_003264536.1| chromosomal replication initiator protein DnaA [Haliangium ochraceum DSM 14365] gi|262076674|gb|ACY12643.1| chromosomal replication initiator protein DnaA [Haliangium ochraceum DSM 14365] Length = 498 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 151/496 (30%), Positives = 245/496 (49%), Gaps = 53/496 (10%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L +++ P Y W + ++ ++ L P ++++ W ++ YL + +E+ Sbjct: 12 LSSKLSPQNYEMWLRPIRCRDYRDEVLVLEAPNSYVRLWFESNYLAIVLDEIKEQTGISY 71 Query: 106 GVEILVR----SVALP---SVEKTASSPSI----------------TKLSPINTNISKSP 142 VE L + A P V T P++ ++ I+ + S P Sbjct: 72 RVEFLPEPEDGAAAQPEADDVPGTDDVPAVLLGGAAASASACAQGAAPITDISASRSARP 131 Query: 143 IILGKQTISPVFGS--------------PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 Q G PL+ R+ F +F+ G SN++AL A+Q+ A Sbjct: 132 RAASGQRAGASAGGLRVVEAPPEPVPPPPLNPRYTFDSFVAGPSNQLALAASQAAASSHP 191 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 Y NP+FI VGLGKTHLL +I ++ +P+ R++YL+ E FM + AIR N Sbjct: 192 PKY-----NPVFICGGVGLGKTHLLHSIGHSLHGLRPDARILYLSGERFMNEYILAIRSN 246 Query: 249 CALNLKDSLR-NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 + R DLLLIDD+QFL GK Q EF H N+L DS +Q+V ADR P E+ Sbjct: 247 RMHEFRRRYREGCDLLLIDDVQFLAGKDGTQDEFFHTFNALHDSQRQIVLTADRKPHEIS 306 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 + R+RSR Q G+ + + EMR +IL+ + E P ++V++++A + Sbjct: 307 DIADRLRSRFQWGLLADIEPPELEMRMAILRQKAEAEHIELP-----DDVVLYIATAIRA 361 Query: 367 SGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 + REL+GA +L S + PI A + L L T + + + E + + VA +Y + Sbjct: 362 NVRELEGALIRLSAYASLSRKPITLAFARETLEGSL--TRKREHLTTEMVIKTVANYYGL 419 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 +D+ S RR + + PR VAMYL++ T S+P++GR FG + HTTV+ AV K+ E Sbjct: 420 KVSDIKSARRHKAIAGPRAVAMYLARAHTKDSYPDLGRAFGGKHHTTVISAVEKITAKRE 479 Query: 485 TDITLKKEVELLKRLI 500 D+ L E++ ++ ++ Sbjct: 480 EDLGLSGEIQAIESVL 495 >gi|91201685|emb|CAJ74745.1| similar to chromosomal replication initiator protein DnaA [Candidatus Kuenenia stuttgartiensis] Length = 495 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/466 (29%), Positives = 239/466 (51%), Gaps = 33/466 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 C I+ + ++ ++GP + WF+ + S+ ++VP F + W++ E + Sbjct: 50 CSKIWDDILENVREKLGPLRFNLWFKNTRLESIGDAYASIAVPNVFTQMWLQ----ENFS 105 Query: 95 KLFQEEHSR-IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L +E+ R ++ ++ VR + EK P + + + G++ + Sbjct: 106 GLLKEDIGRFLKRSDLDVRFILDNKQEKEIVLPEKPDV------VDEKGAYTGRKALG-- 157 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ + F+ G +NR+A TAA + + + + NPLFIH +VG+GKTHLL Sbjct: 158 ----LNKGLLLEDFVIGPNNRLAYTAALEMIKEEYPPF-----NPLFIHGNVGVGKTHLL 208 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 I N ++++ + VY++AE + F A++ + + RN+D+ LIDD+ FL Sbjct: 209 VGIWN-RVRKEQTVNAVYMSAEKWTNEFIYALQKGKMESFRQRYRNVDVFLIDDVHFLSN 267 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +Q EF H N+L DS+K+++ A+D P ++ L + SR G+ + +Y R Sbjct: 268 KQGVQEEFLHTFNALYDSSKRIIFASDAHPKQISQLKENLASRFMSGMVARIERPEYATR 327 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTA 390 IL+ + + K D + EE L ++A S RE++ A L F I A Sbjct: 328 LLILRTK---ASKYD--VYFPEEALEYIAEKFDDSVREVESALVTLTAHARFNDRKIDIA 382 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + D L G+ K +++E+I+ V +H+NISR+DL S+R+ +TV PRQ+ MYL K Sbjct: 383 FVKDVLKEFFY--GDDKVVKVEEIEGAVLRHFNISRSDLHSSRKAKTVSFPRQICMYLIK 440 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S+ +IG FG++ HTTV+ A++K+ + L+ D K +++L Sbjct: 441 NQLDWSYQQIGNYFGNKKHTTVIFAIKKINEELKKDDQFKSFLDML 486 >gi|325961451|ref|YP_004239357.1| chromosomal replication initiator protein DnaA [Arthrobacter phenanthrenivorans Sphe3] gi|323467538|gb|ADX71223.1| chromosomal replication initiator protein DnaA [Arthrobacter phenanthrenivorans Sphe3] Length = 474 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 216/379 (56%), Gaps = 25/379 (6%) Query: 133 PINTNISKSPIILGKQTISPVFGSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 P+ S SP L +Q P+ S L+ ++VF TF+ GSSNR A AA ++AE Sbjct: 102 PVVVEPSFSPDQLIEQKPQPMLPSTSHEFGRLNPKYVFDTFVIGSSNRFAHAAAVAVAEA 161 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 + Y NPLFI+ GLGKTHLL AI + + + +RV Y+ +E F F ++IR Sbjct: 162 PAKAY-----NPLFIYGDSGLGKTHLLHAIGHYARRLYSGIRVRYVNSEEFTNDFINSIR 216 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 D+ + K + RN+D+LLIDD+QFL GK EF H NSL ++ KQVV +D+PP L Sbjct: 217 DDEGASFKTTYRNVDVLLIDDIQFLAGKDRTLEEFFHTFNSLHNNNKQVVITSDQPPKLL 276 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 + R++SR + G+ + + E R +IL+ + A+S+ L+ ++ L ++A ++ Sbjct: 277 AGFEDRMKSRFEWGLLTDIQPPELETRIAILRKK-ALSEG----LSAPDDALEYIASKIS 331 Query: 366 TSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH 421 ++ REL+GA L+ +FA + + +A+ +L L+ +++ I + A++ Sbjct: 332 SNIRELEGA---LIRVTAFASLNRQPVDVALAEMVLKDLITDDGAQEITSSQILQQTAEY 388 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-E 480 + +S +L S R RT+V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ E Sbjct: 389 FKLSMEELCSKSRTRTLVTARQIAMYLCRELTDMSLPKIGQELGGRDHTTVIHADRKIRE 448 Query: 481 KMLETDITLKKEVELLKRL 499 M E + + EL R+ Sbjct: 449 LMAERRVIYNQVTELTNRI 467 >gi|91200553|emb|CAJ73602.1| similar to replication initiation protein DnaA [Candidatus Kuenenia stuttgartiensis] Length = 495 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 136/466 (29%), Positives = 239/466 (51%), Gaps = 33/466 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 C I+ + ++ ++GP + WF+ + S+ ++VP F + W++ E + Sbjct: 50 CSKIWDDILENVREKLGPLRFNLWFKNTRLESIGDAYASIAVPNVFTQMWLQ----ENFS 105 Query: 95 KLFQEEHSR-IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L +E+ R ++ ++ VR + EK P + + + G++ + Sbjct: 106 GLLKEDIGRFLKRSDLDVRFILDNKQEKEIVLPEKPDV------VDEKGAYTGRKALG-- 157 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ + F+ G +NR+A TAA + + + + NPLFIH +VG+GKTHLL Sbjct: 158 ----LNKGLLLEDFVIGPNNRLAYTAALEMIKEEYPPF-----NPLFIHGNVGVGKTHLL 208 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 I N ++++ + VY++AE + F A++ + + RN+D+ LIDD+ FL Sbjct: 209 VGIWN-RVRKEQTVNAVYMSAEKWTNEFIYALQKGKMESFRQRYRNVDVFLIDDVHFLSN 267 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +Q EF H N+L DS+K+++ A+D P ++ L + SR G+ + +Y R Sbjct: 268 KQGVQEEFLHTFNALYDSSKRIIFASDAHPKQISQLKENLASRFMSGMVARIERPEYATR 327 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTA 390 IL+ + + K D + EE L ++A S RE++ A L F I A Sbjct: 328 LLILRTK---ASKYD--VYFPEEALEYIAEKFDDSVREVESALVTLTAHARFNDRKIDIA 382 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + D L G+ K +++E+I+ V +H+NISR+DL S+R+ +TV PRQ+ MYL K Sbjct: 383 FVKDVLKEFFY--GDDKVVKVEEIEGAVLRHFNISRSDLHSSRKAKTVSFPRQICMYLIK 440 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S+ +IG FG++ HTTV+ A++K+ + L+ D K +++L Sbjct: 441 NQLDWSYQQIGNYFGNKKHTTVIFAIKKINEELKKDDQFKSFLDML 486 >gi|184199647|ref|YP_001853854.1| chromosomal replication initiator protein DnaA [Kocuria rhizophila DC2201] gi|183579877|dbj|BAG28348.1| chromosomal replication initiator protein DnaA [Kocuria rhizophila DC2201] Length = 564 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/331 (37%), Positives = 196/331 (59%), Gaps = 18/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++VF +F+ G SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 223 LNPKYVFDSFVIGQSNRFAHAAAFAVAETPAKAY-----NPLFIYGDSGLGKTHLLHAIG 277 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + + P +RV Y+ +E F F ++IRD+ + K RN+DLLLIDD+QFL GK Sbjct: 278 HYAKRLYPKMRVRYVNSEEFTNDFINSIRDDEGSSFKGIYRNVDLLLIDDIQFLAGKEHT 337 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ+V +D PP +L R+RSR + G+ + + E R +IL Sbjct: 338 QEEFFHTFNALHNHEKQIVITSDMPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAIL 397 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + AIS+ ++ ++V+ ++A ++T+ REL+GA L+ +FA + + + Sbjct: 398 RKK-AISE----GMDAPDDVMEYIASHISTNIRELEGA---LIRVTAFASLNKQPVDLPL 449 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ +++ I A +NI+ ++L S R RT+V RQ+AMYL + + Sbjct: 450 AELVLKDLITDDGGQEITAASILGQTAAFFNITLDELKSKSRTRTLVTARQIAMYLLREL 509 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG+ G RDHTTV+HA RK+ ++ Sbjct: 510 TDMSLPKIGQELGGRDHTTVMHADRKIRTLM 540 >gi|47093227|ref|ZP_00231000.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 4b H7858] gi|47018421|gb|EAL09181.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 4b H7858] Length = 343 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/362 (33%), Positives = 197/362 (54%), Gaps = 29/362 (8%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ V + Sbjct: 6 YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFDVR-FIDGE 64 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 + E T P N + + I +GK ++P R+VF TF+ GS NR Sbjct: 65 QEENFEYTVIKP--------NPALDEDGIEIGKHMLNP--------RYVFDTFVIGSGNR 108 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N +V+YL++ Sbjct: 109 FAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDNAKVMYLSS 163 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N+L D KQ Sbjct: 164 EKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLYDEQKQ 223 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + K D L+I Sbjct: 224 IIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AKAD-GLDIP 278 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIE 412 EV++++A + ++ REL+GA ++V S +TA +A E L ++ + +++ + I Sbjct: 279 NEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSSKSQVITIS 338 Query: 413 DI 414 I Sbjct: 339 GI 340 >gi|118602061|ref|YP_903276.1| chromosomal replication initiator protein DnaA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567000|gb|ABL01805.1| chromosomal replication initiator protein DnaA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 430 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/357 (34%), Positives = 208/357 (58%), Gaps = 20/357 (5%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 +Q I+P+F + F I G++N++A A + IAE T NP I+ G Sbjct: 82 QQHITPLF-----EDYTFDNLILGNANQMAYGATKQIAE----NIKTSPYNPFIIYGGSG 132 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QA + S ++ N++V+Y+ F+ S++R N N+K ++ DLLL+D Sbjct: 133 LGKTHLMQAAGHLSKEKNQNIKVIYVPLMDFVRNITSSLRHNTIENIKTFYQSADLLLVD 192 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+ + GK Q EF H+ N L + KQ++ D+ P ++SL+ R+++R G+++ L Sbjct: 193 DIHLIAGKEKSQEEFFHIFNFLFNGKKQIIFTCDQSPKNIKSLENRLKTRFSQGLNLHLT 252 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 + EMR +IL L SQ + +N+ E+ + +A + ++ R+L+GA +L F+ Sbjct: 253 PPELEMRAAIL---LKKSQNKRININLTEDTALFIATHIASNVRDLEGALLKLKAFVDFS 309 Query: 386 PI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 I ++ EI + L L+ + K + I DIQ+ VAKHY ++ +DL S R + +V Sbjct: 310 KINHDFISKEIVETALGDLIKP-QIKNIDINDIQKEVAKHYALTISDLSSKSRKQHMVLA 368 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLK 497 RQ+A+++ ++ S +IG+ FG+RDH+TVLHA++K+ EK LE +I +K + EL+K Sbjct: 369 RQMAIFICHELSSLSLSKIGKHFGNRDHSTVLHAIKKIKEKHLE-NIEIKNDYELIK 424 >gi|332286195|ref|YP_004418106.1| chromosomal replication initiation protein [Pusillimonas sp. T7-7] gi|330430148|gb|AEC21482.1| chromosomal replication initiation protein [Pusillimonas sp. T7-7] Length = 466 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 140/458 (30%), Positives = 227/458 (49%), Gaps = 26/458 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRL---KFHSVLHNIVHLSVPTNFLKAWIKNRY 89 ++ + + RL+ + P ++W + L F ++ +S P F W++ + Sbjct: 1 MDMKDFWQTCVQRLEQDLPPQQISAWIRPLVPLAFDET-QAVLRVSAPNRFKLDWVRKNF 59 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I L E + R V++L +V + AS+P+ T + Sbjct: 60 SHKIETLATEWYER--PVQVLFELAGGGAVAR-ASAPARTATPNTAAPAAAGVPATPAAA 116 Query: 150 ISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 V S L++ F F+ G +N++A AA +AE Y NPLF++ Sbjct: 117 NPAVEQVMHDRSRLNTDLTFDNFVTGKANQLARAAALQVAENPGVSY-----NPLFLYGG 171 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI N + RV Y+ A+ ++ A + K ++DLLL Sbjct: 172 VGLGKTHLIHAIGNTLLANGNGTRVRYVHADQYVSDVVKAYQRKAFDEFKRYYHSLDLLL 231 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF GK Q EF + +++ KQ++ +D P EL ++D R+ SR G++V Sbjct: 232 IDDIQFFAGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSNIDSRLISRFDSGLTVA 291 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + EMR +IL + + + + + EEV +A+ + ++ REL+GA ++ Sbjct: 292 IEPPELEMRVAIL-----LHKAQTEGVTMPEEVAFFIAKHLRSNVRELEGALRKVSAYAR 346 Query: 384 F--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 F +LT ++ + L L++ ++ +E+IQ+ VA Y I D+ S RR + P Sbjct: 347 FHGREVLTVDVCKDALKDLLSVS-NGQITVENIQKTVADFYKIKVADMYSKRRPANIAMP 405 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 RQVAMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 406 RQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKI 443 >gi|282891915|ref|ZP_06300394.1| hypothetical protein pah_c200o074 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498175|gb|EFB40515.1| hypothetical protein pah_c200o074 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 448 Score = 204 bits (519), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 228/459 (49%), Gaps = 31/459 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K + +W +K + L VP F+K ++ + Y + + F Sbjct: 17 VKGHCSAAAFGNWLAPIKVLESTAEEITLEVPNVFVKEYLLSNYKKELKLFFP------- 69 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V + P +E +P + + P+ Q+ L+ + F Sbjct: 70 -----VTTTGEPQIEFVVVAPEKKSAAIPTPTVDHHPVQQNAQS----HEVKLNENYRFE 120 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TFIEG +N +AA +A Y N LFIH VGLGKTH+L +I + Sbjct: 121 TFIEGPTNMFVKSAAIGVATRPGQSY-----NLLFIHGGVGLGKTHILHSIGHYVKDHHK 175 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQHEFCHL 283 LRV +T E F+ ++R+ +K R ++D+LL+DD+QFLQ +L + EFCH Sbjct: 176 KLRVQCITTEAFINDLVDSLRNKSVDKMKRFYRSDVDVLLVDDIQFLQNRLNFEEEFCHT 235 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 +L++ KQ+V +D+PPS+L+ L R+ +R++ G+ +G+ D E R +IL+++ Sbjct: 236 FETLINQKKQIVITSDKPPSQLK-LSERLIARMEWGLVAHVGMPDLETRVAILQHK---- 290 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVN 402 + L I V +A + + R+L+GA N+L + +T E+ ++ L ++ Sbjct: 291 -AQQKGLEIPNNVAFFIAEHIYNNVRQLEGAVNRLCAHCKLLDLNITEELVEKTLREMMQ 349 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 KK+ +E I + VA + + NDL + R + + PRQVAMYL+ M S +G Sbjct: 350 QAPNKKISVEQILKSVATVFQVRVNDLKGSTRTKDIALPRQVAMYLAYKMINESLQMLGA 409 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG + H+T+LHA + +EK + T+ L++++ +++R I+ Sbjct: 410 SFG-KTHSTILHACKTIEKKVATNEILRRQIGMVERNIA 447 >gi|15604996|ref|NP_219780.1| chromosomal replication initiation protein [Chlamydia trachomatis D/UW-3/CX] gi|76788997|ref|YP_328083.1| chromosomal replication initiation protein [Chlamydia trachomatis A/HAR-13] gi|237804620|ref|YP_002888774.1| chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311076|ref|ZP_05353646.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276] gi|255317377|ref|ZP_05358623.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276s] gi|255348635|ref|ZP_05380642.1| chromosomal replication initiation protein [Chlamydia trachomatis 70] gi|255503175|ref|ZP_05381565.1| chromosomal replication initiation protein [Chlamydia trachomatis 70s] gi|255506853|ref|ZP_05382492.1| chromosomal replication initiation protein [Chlamydia trachomatis D(s)2923] gi|14194663|sp|O84277|DNAA2_CHLTR RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|3328688|gb|AAC67868.1| Replication Initiation Factor [Chlamydia trachomatis D/UW-3/CX] gi|76167527|gb|AAX50535.1| DnaA [Chlamydia trachomatis A/HAR-13] gi|231272920|emb|CAX09831.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|289525314|emb|CBJ14790.1| Chromosomal replication initiation protein [Chlamydia trachomatis Sweden2] gi|296434864|gb|ADH17042.1| chromosomal replication initiation protein [Chlamydia trachomatis E/150] gi|296435791|gb|ADH17965.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9768] gi|296436716|gb|ADH18886.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11222] gi|296437651|gb|ADH19812.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11074] gi|296438584|gb|ADH20737.1| chromosomal replication initiation protein [Chlamydia trachomatis E/11023] gi|297140150|gb|ADH96908.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9301] Length = 455 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 232/460 (50%), Gaps = 33/460 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K + + +W ++ + L +P F+++++ + Y + + + Sbjct: 17 IKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIFVQSYLLDNYKKDLCSFVPLDAEGNP 76 Query: 106 GVEILVRSV--ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +E +V + + P V + + P+ T++S N + F L+ + Sbjct: 77 ALEFVVAEIKRSSPLVTPSIAKPA-TEVSEENKD----------------FQLKLNGAYR 119 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ + + Sbjct: 120 FDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLFIHGGVGLGKTHLLHAVGHYVREH 174 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCH 282 NLR+ +T E F+ +R +K+ R++DLLL+DD+QFLQ + + EFC+ Sbjct: 175 HKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCN 234 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 +L+ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +IL+++ Sbjct: 235 TFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWGLVAHVGVPDLETRVAILQHK--- 290 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLV 401 E LNI E+ ++A V + R+L+GA N+L + F LT + L L Sbjct: 291 --AEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELF 348 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 +K+ +E I + VA + + DL + R + V RQVAMYL+K + S IG Sbjct: 349 RAPSKQKVSVESILKSVATVFQVKIQDLKGSSRAKNVPLARQVAMYLAKTLITDSLVAIG 408 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG + H+TVL+A + +E+ +E D LK ++ L K I+ Sbjct: 409 AAFG-KTHSTVLYACKTIEQKIEKDALLKNQISLCKNNIA 447 >gi|326329129|ref|ZP_08195457.1| putative replication initiator protein [Nocardioidaceae bacterium Broad-1] gi|325953016|gb|EGD45028.1| putative replication initiator protein [Nocardioidaceae bacterium Broad-1] Length = 575 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 190/331 (57%), Gaps = 18/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ GSSNR AA +++E Y NPL ++ GLGKTHLL AI Sbjct: 234 LNPKYTFETFVIGSSNRFPHAAAVAVSEAPGKAY-----NPLLVYGESGLGKTHLLHAIG 288 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + +V Y+++E F F +AIRD+ K R++D+LLIDD+QFL+GK Sbjct: 289 HYVRSLYSGAKVRYVSSEEFTNEFINAIRDDRQDRFKRRYRDVDVLLIDDIQFLEGKTQT 348 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V +DRPP LE+L+ R+R+R + G+ + D E R +IL Sbjct: 349 QEEFFHTFNTLHNANKQIVLTSDRPPKRLEALEDRLRNRFEWGLITDVQPPDIETRIAIL 408 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + A+ +L +VL +A + T+ REL+GA L+ +FA + ++ Sbjct: 409 RKKAAME-----RLTAPPDVLEFIASKIQTNIRELEGA---LIRVTAFANLNRQDVDLTL 460 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ G ++ I A ++ +S ++L R R +V RQ+AMYL + + Sbjct: 461 AEIVLKDLIPEGGEPEITAGLIIAQTAAYFGLSIDELTGPSRGRHLVMARQIAMYLCREL 520 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG+ FG RDHTTV++A RK+ ++L Sbjct: 521 TEDSLPKIGKHFGGRDHTTVMYAERKINQLL 551 >gi|255324008|ref|ZP_05365133.1| chromosomal replication initiator protein DnaA [Corynebacterium tuberculostearicum SK141] gi|255298865|gb|EET78157.1| chromosomal replication initiator protein DnaA [Corynebacterium tuberculostearicum SK141] Length = 545 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 14/347 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F +F+ GSSNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 205 LNPKHTFDSFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAG 259 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P LRV Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Sbjct: 260 NYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKEST 319 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 320 QEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 379 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + A E ++ VL +A +S REL+GA ++ S PI E+A+ Sbjct: 380 MKKAANDGTE-----VDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-NVEMAE 433 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L L +++ I + A+ ++I L + R V RQ+AMYL + +T Sbjct: 434 IALRDLAPDSADRQITATSIMEVTAEFFDIDVETLRGAGKKRAVAHARQLAMYLCRELTE 493 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P+IG +FG +DHTTV++A RK+ K + E++ L + I+ Sbjct: 494 LSLPKIGEQFGGKDHTTVIYADRKIRKEMTEKRNTYDEIQALTQRIT 540 >gi|159035675|ref|YP_001534928.1| chromosomal replication initiator protein DnaA [Salinispora arenicola CNS-205] gi|157914510|gb|ABV95937.1| chromosomal replication initiator protein DnaA [Salinispora arenicola CNS-205] Length = 591 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 200/351 (56%), Gaps = 19/351 (5%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ +++F TF+ GSSNR A A+ ++AE + Y NPLFI+ S GLGKTHLL Sbjct: 250 GNRLNPKYMFETFVIGSSNRFAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLH 304 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + V Y++ E F F +++RD+ + R++D+LLIDD+QFL+ + Sbjct: 305 AIGHYATTLGNAHSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENR 364 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E R Sbjct: 365 ERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRI 424 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI- 392 +IL+ + A +L +VL +A V+ S REL+GA ++ +FA + + + Sbjct: 425 AILQKKAAQE-----RLFAPPDVLEFIASRVSNSIRELEGALIRVT---AFASLTRSSVE 476 Query: 393 ---ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A+E+L + G ++ + I A ++ +S DL + R R +V RQVAMYL Sbjct: 477 LSLAEEVLRDFIPDGAGPEITADQIMVATADYFGVSLEDLRGHSRSRVLVNARQVAMYLC 536 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 + +T S P IG+ FG RDHTTV+HA RK+ + + +L ++ EL R+ Sbjct: 537 RELTDLSLPRIGQAFGGRDHTTVMHADRKIRQQMAERRSLYNQIAELTNRI 587 >gi|297748405|gb|ADI50951.1| DnaA [Chlamydia trachomatis D-EC] gi|297749285|gb|ADI51963.1| DnaA [Chlamydia trachomatis D-LC] Length = 486 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 142/481 (29%), Positives = 239/481 (49%), Gaps = 33/481 (6%) Query: 25 DVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAW 84 D + L N S + + +K + + +W ++ + L +P F++++ Sbjct: 27 DKENAMLTCNDCSTWEQFVNYIKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIFVQSY 86 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSV--ALPSVEKTASSPSITKLSPINTNISKSP 142 + + Y + + + +E +V + + P V + + P+ T++S N + Sbjct: 87 LLDNYKKDLCSFVPLDAEGNPALEFVVAEIKRSSPLVTPSIAKPA-TEVSEENKD----- 140 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 F L+ + F FIEG SN+ +AA IA Y NPLFIH Sbjct: 141 -----------FQLKLNGAYRFDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLFIH 184 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHLL A+ + + NLR+ +T E F+ +R +K+ R++DL Sbjct: 185 GGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSLDL 244 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+QFLQ + + EFC+ +L+ +KQ+V +D+PP +L+ L RI +R++ G+ Sbjct: 245 LLVDDIQFLQNRQNFEEEFCNTFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWGLV 303 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VF 380 +G+ D E R +IL+++ E LNI E+ ++A V + R+L+GA N+L + Sbjct: 304 AHVGVPDLETRVAILQHK-----AEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLTAY 358 Query: 381 RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 F LT + L L +K+ +E I + VA + + DL + R + V Sbjct: 359 CLLFNKPLTETTVRDTLKELFRAPSKQKVSVESILKSVATVFQVKIQDLKGSSRAKNVPL 418 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQVAMYL+K + S IG FG + H+TVL+A + +E+ +E D LK ++ L K I Sbjct: 419 ARQVAMYLAKTLITDSLVAIGAAFG-KTHSTVLYACKTIEQKIEKDALLKNQISLCKNNI 477 Query: 501 S 501 + Sbjct: 478 A 478 >gi|330470833|ref|YP_004408576.1| chromosomal replication initiator protein DnaA [Verrucosispora maris AB-18-032] gi|328813804|gb|AEB47976.1| chromosomal replication initiator protein DnaA [Verrucosispora maris AB-18-032] Length = 607 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/351 (35%), Positives = 200/351 (56%), Gaps = 19/351 (5%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ +++F TF+ GSSNR A A+ ++AE + Y NPLFI+ S GLGKTHLL Sbjct: 266 GNRLNPKYMFETFVIGSSNRFAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLH 320 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + V Y++ E F F +++RD+ + R++D+LLIDD+QFL+ + Sbjct: 321 AIGHYATTLGNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENR 380 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E R Sbjct: 381 ERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRI 440 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI- 392 +IL+ + A +L +VL +A V+ S REL+GA ++ +FA + + + Sbjct: 441 AILQKKAAQE-----RLYAPPDVLEFIASRVSNSIRELEGALIRVT---AFASLTRSSVE 492 Query: 393 ---ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A+E+L + G ++ + I A ++ +S DL + R R +V RQVAMYL Sbjct: 493 LSLAEEVLRDFIPDGAGPEITADQIMVSTADYFGVSLEDLRGHSRSRVLVNARQVAMYLC 552 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 + +T S P IG+ FG RDHTTV+HA RK+ + + +L ++ EL R+ Sbjct: 553 RELTDLSLPRIGQAFGGRDHTTVMHADRKIRQQMAERRSLYNQIAELTNRI 603 >gi|260434926|ref|ZP_05788896.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8109] gi|260412800|gb|EEX06096.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8109] Length = 465 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/354 (35%), Positives = 206/354 (58%), Gaps = 21/354 (5%) Query: 155 GSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 GSP L+ R+VF F+ G ++R+A AA ++AE + NPLFI VGLG Sbjct: 117 GSPRRYLPGLNPRYVFGRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGGVGLG 171 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+ Sbjct: 172 KTHLMQAIGHYRLEIDPRARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDI 231 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK Q EF H N+L ++ +QVV A+DRPPS++ L R+ SR Q G+ + Sbjct: 232 QFIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSP 291 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ + E ++++ +++ ++A T++ REL+GA + V +FA I Sbjct: 292 DLETRMAILQKK-----AEQERMSLPRDLIQYIAGRFTSNIRELEGALTRAV---AFASI 343 Query: 388 LTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + E ++ +++ TG+ ++ + + V++ ++++ ++ S+ R R V + RQV M Sbjct: 344 TGLPMTVESVAPMLDPTGQGVEVTPQQVIDKVSEVFDVTAEEMCSSTRRRAVSQARQVGM 403 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL + T S P IG FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 404 YLMRQGTDLSLPRIGDNFGGKDHTTVMYAIEQVEKKLASDPQLAGQVQKVKDLL 457 >gi|78212507|ref|YP_381286.1| chromosomal replication initiation protein [Synechococcus sp. CC9605] gi|78196966|gb|ABB34731.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9605] Length = 450 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 203/345 (58%), Gaps = 15/345 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+VF F+ G ++R+A AA ++AE + NPLFI VGLGKTHL+QAI Sbjct: 111 LNPRYVFGRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGGVGLGKTHLMQAIG 165 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++ P RV Y++ E F AIR + +D R DL+L+DD+QF++GK Sbjct: 166 HYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQFIEGKEYT 225 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ +QVV A+DRPPS++ L R+ SR Q G+ + D E R +IL Sbjct: 226 QEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSPDLETRMAIL 285 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + E ++++ +++ ++A T++ REL+GA + V +FA I + E Sbjct: 286 QKK-----AEQERMSLPRDLIQYIAGRFTSNIRELEGALTRAV---AFASITGLPMTVES 337 Query: 397 LSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ +++ TG+ ++ + + V++ ++++ ++ S+ R R V + RQV MYL + T Sbjct: 338 VAPMLDPTGQGVEVTPQQVIDKVSEVFDVTAEEMCSSTRRRAVSQARQVGMYLMRQGTDL 397 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 398 SLPRIGDNFGGKDHTTVMYAIEQVEKKLASDPQLAGQVQKVKDLL 442 >gi|254295380|ref|YP_003061403.1| chromosomal replication initiator protein DnaA [Hirschia baltica ATCC 49814] gi|254043911|gb|ACT60706.1| chromosomal replication initiator protein DnaA [Hirschia baltica ATCC 49814] Length = 500 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 136/467 (29%), Positives = 242/467 (51%), Gaps = 12/467 (2%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I++ V ++L++ G + W L F + + V LS + + I Y+ IT ++ Sbjct: 32 IWSEVRAKLRDLYGASSFDKWMASLVFVAEVDGTVTLSTESRIDRERIDRDYMRNITGVW 91 Query: 98 QEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + V ++ + L ++ KT + K + + + + K+++ F Sbjct: 92 AALDPKSRPVNLMADADLCEDLKALAKTNRANQNKKAVSVKASAENTKVADKKESVD--F 149 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 +D F T + G SN++A A+ +A G +V + + + G+GKTHLL+ Sbjct: 150 TQGVDLTQTFDTLVVGDSNQLAANIARKVAS-GIVGPVSV----VLFYGAHGVGKTHLLR 204 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + VY++AE FM F +R ++ +RN D++L+DD+Q + + Sbjct: 205 AIEHDCAVQTKAKSAVYMSAEDFMLSFVEGVRQKDTSAQRNRIRNADIVLLDDLQLITSR 264 Query: 275 LIQ-HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF L ++ + +VV +AD P+ LE LD R+R +QGGV V + + EMR Sbjct: 265 AATLKEFFQHLRAVTSNGGKVVLSADAAPTRLECLDDRMRDDIQGGVVVEVHRPEIEMRA 324 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA 393 I+++++AI +++ P+ ++ + + +A +T SGR L GA + A E A Sbjct: 325 EIIRSKIAIIKEDFPEFSLEDAWIDMMAERLTASGRALYGAVRNVFAGTVLANKPVTEAA 384 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L+ GE + +I+ I+ +VAK+Y +++ DL S R R + +PRQ+AMY + +T Sbjct: 385 VENAIRLI-VGERRAPKIDTIKDVVAKYYGVTKADLDSASRRRNLAQPRQIAMYFCRELT 443 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+P IG FG RDHTTV++A RKV++ ++ + L E+ L+R I Sbjct: 444 TCSYPLIGFNFGKRDHTTVIYACRKVQERIDLESELGDEIVKLQRQI 490 >gi|187734518|ref|YP_001876630.1| chromosomal replication initiator protein DnaA [Akkermansia muciniphila ATCC BAA-835] gi|187424570|gb|ACD03849.1| chromosomal replication initiator protein DnaA [Akkermansia muciniphila ATCC BAA-835] Length = 468 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 135/473 (28%), Positives = 238/473 (50%), Gaps = 30/473 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + ++ ++ L+ + P+VY WF + + L W++N Y T Sbjct: 9 ATWSKITGALQTIMSPEVYGLWFPKFSLLEDSGKALTLVCDDPMAALWVENSY----TPE 64 Query: 97 FQEEHSRIQGVEILVRSV------ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ++ G E ++ V ++P+ E S +P + +P+ K+ Sbjct: 65 LKQAAMLALGTERQIKFVCTDEVASMPAAEGQPQKASSRAKTPQAADSPAAPV---KKQR 121 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ + F +F+ +R A A S+A+ + + NPLF++ G+GKT Sbjct: 122 TSAARACLNDLYTFDSFVVYEDSRFAYQAGLSVAQSERALF-----NPLFLYGKSGVGKT 176 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA---LNLKDSLRNIDLLLIDD 267 HLLQAI + + + + VVY+T E F F A R L+ R D+LL+DD Sbjct: 177 HLLQAIGHEVLHQDSSTNVVYVTGEQFANEFIDASRTQNGQSFTKLRRKYRKADVLLVDD 236 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK EF H + L + K +V AD ++ +LDPR+ +RL+ G++V L L Sbjct: 237 VQFISGKEKTVEEFLHTFDELFHAHKTIVICADAAACDISNLDPRLAARLESGLTVELNL 296 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D R IL+ S+++ +N+++E+L +A + S R L+GA ++ S + Sbjct: 297 PDDNARLEILR-----SKRDRAGMNVSDEILEFLASRIQKSVRRLEGALLRVATFTSLSG 351 Query: 387 ILTAEIA--DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + +IA ++LL ++ ++ + ++ IQ+ VA Y + +DL RR ++ PRQ+ Sbjct: 352 DM-PDIAKIEQLLRDILREETSRILTVDSIQKRVADFYELKVSDLTGKRRPNSIAFPRQI 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 AMYLS+ +T RS +IG+ FG RDH TV+HA + V +E D+ ++ V+ L+ Sbjct: 411 AMYLSRRLTERSLKDIGQAFGGRDHGTVIHANKLVASRMEEDVRVRDIVQRLE 463 >gi|227831831|ref|YP_002833538.1| chromosomal replication initiator protein [Corynebacterium aurimucosum ATCC 700975] gi|262183095|ref|ZP_06042516.1| chromosomal replication initiation protein [Corynebacterium aurimucosum ATCC 700975] gi|254777897|sp|C3PE72|DNAA_CORA7 RecName: Full=Chromosomal replication initiator protein DnaA gi|227452847|gb|ACP31600.1| chromosomal replication initiator protein [Corynebacterium aurimucosum ATCC 700975] Length = 546 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 121/346 (34%), Positives = 195/346 (56%), Gaps = 14/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ GSSNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 206 LNPKHTFENFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAG 260 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P LRV Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Sbjct: 261 NYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKEST 320 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 321 QEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 380 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + +++ VL +A +S REL+GA ++ S PI + E+A+ Sbjct: 381 MKKASAD-----GTDVDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-SLEMAE 434 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L L +++ I + A ++NI + L + + R V RQ+AMYL + +T Sbjct: 435 IALHDLAPDSADRQITAAAIIEVTADYFNIDVDTLRGSGKKRAVAHARQLAMYLCRELTE 494 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG +FG +DHTTV++A RK+ K + + E++ L + + Sbjct: 495 LSLPKIGDQFGGKDHTTVIYADRKIRKEMTENRNTYDEIQALTQRV 540 >gi|311741699|ref|ZP_07715521.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303220|gb|EFQ79301.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035] Length = 545 Score = 204 bits (518), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 123/346 (35%), Positives = 192/346 (55%), Gaps = 14/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F +F+ GSSNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 205 LNPKHTFDSFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAG 259 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P LRV Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Sbjct: 260 NYAQVLHPGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKEST 319 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 320 QEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 379 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + A E ++ VL +A +S REL+GA ++ S PI E+A+ Sbjct: 380 MKKAANDGTE-----VDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-NVEMAE 433 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L L +++ I + A+ ++I L + R V RQ+AMYL + +T Sbjct: 434 IALRDLAPDSADRQITATSIMEVTAEFFDIDVETLRGAGKKRAVAHARQLAMYLCRELTE 493 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG +FG +DHTTV++A RK+ K + E++ L + I Sbjct: 494 LSLPKIGEQFGGKDHTTVIYADRKIRKEMTEKRNTYDEIQALTQRI 539 >gi|237802698|ref|YP_002887892.1| chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] gi|231273932|emb|CAX10724.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] Length = 455 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 232/460 (50%), Gaps = 33/460 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K + + +W ++ + L +P F+++++ + Y + + + Sbjct: 17 IKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIFVQSYLLDNYKKDLCSFVPLDAEGNP 76 Query: 106 GVEILVRSV--ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +E +V + + P V + + P+ T++S N + F L+ + Sbjct: 77 ALEFVVAEIKRSSPLVTPSIAKPA-TEVSEENKD----------------FQLKLNGAYR 119 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ + + Sbjct: 120 FDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLFIHGGVGLGKTHLLHAVGHYVREH 174 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCH 282 NLR+ +T E F+ +R +K+ R++DLLL+DD+QFLQ + + EFC+ Sbjct: 175 HKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCN 234 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 +L+ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +IL+++ Sbjct: 235 TFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWGLVAHVGVPDLETRVAILQHK--- 290 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLV 401 E LNI E+ ++A V + R+L+GA N+L + F LT + L L Sbjct: 291 --AEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELF 348 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 +K+ +E I + VA + + DL + R + V RQVAMYL+K + S IG Sbjct: 349 RAPSKQKVSVESILKSVATVFQVKIQDLKGSSRAKNVPLARQVAMYLAKTLITDSLVAIG 408 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG + H+TVL+A + +E+ +E D LK ++ L K I+ Sbjct: 409 AAFG-KTHSTVLYACKTIEQKIERDALLKNQISLCKNNIA 447 >gi|108761581|ref|YP_628287.1| chromosomal replication initiator protein DnaA [Myxococcus xanthus DK 1622] gi|108465461|gb|ABF90646.1| chromosomal replication initiator protein DnaA [Myxococcus xanthus DK 1622] Length = 450 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 146/451 (32%), Positives = 241/451 (53%), Gaps = 43/451 (9%) Query: 53 DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI-QGVEILV 111 D W +R++ V + + VP F + W+ + Y + + +R+ +G+ Sbjct: 31 DYALRWLERMRPLEVRDGALVMGVPDRFFRDWVDDHY----RPMLDVQLARMGEGLT--- 83 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 S+A VE P P ++ S G+ L++RF F TF+ Sbjct: 84 -SIAYEVVEGLEPDPHF----PPTPSVKASATRPGR----------LNARFTFDTFVVAD 128 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SN++ AAQ++A+ H Y NPL+I+ GLGKTHLLQA+ N +R P+ RVV+ Sbjct: 129 SNQLPAAAAQAVADKPGHHY-----NPLYIYGGTGLGKTHLLQAVGNLIWERDPSQRVVF 183 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL--IQHEFCHLLNSLL 288 L++E F + ++R++ + + R D+LL+DD+QFL GK Q EF + N+L Sbjct: 184 LSSEQFTNEYVESVREHRMGDFRRKFREECDVLLLDDIQFL-GKREETQKEFFYTFNTLY 242 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + K +V +D P+E+ L+ R+RSR G+ + YE R +IL+ + A+++ Sbjct: 243 EMNKAIVLTSDTVPAEIPGLEDRLRSRFAMGLMTDIREPTYETRVAILQKK-AVAE---- 297 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGET 406 L++ + V +A+ + + REL+GA +L HS P+ T + A ++L ++ Sbjct: 298 GLDLPDSVAHFIAKHIQKNVRELEGALVKLSAVHSLTRQPV-TEDFASQVLRDILPAHSA 356 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 + +E IQR VA+ Y ++ L +RR + + RQVAMYLS+ +T SFPEI RF Sbjct: 357 --VDVEAIQREVARFYKVTVESLKEDRRHKALAHARQVAMYLSRKLTKSSFPEIAARFS- 413 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +DH+TV+ AVRKVE + TD T+++E+ L+ Sbjct: 414 KDHSTVISAVRKVEGLRVTDATVQRELAELE 444 >gi|318040987|ref|ZP_07972943.1| chromosomal replication initiation protein [Synechococcus sp. CB0101] Length = 478 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 142/478 (29%), Positives = 245/478 (51%), Gaps = 28/478 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ V L+ + + +W + + L P F W++ YL TI Sbjct: 7 ETLWRQVQEALQGNLSKPTFETWIRPACCAGFNGTELQLLAPNAFACGWLRKNYLVTIAS 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSI-TKLSPINTN-ISKSPIILGKQTIS-- 151 + E R + + V + P + + + L+P + + +S + G + S Sbjct: 67 VASEIAGRP--ISVQVEAGRDPDLAQGLNGNGFQAPLAPGEASPVGESSLPGGAASASQR 124 Query: 152 -PVFGSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 P +P L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI Sbjct: 125 LPTGETPRKLAPGLNPRYVFNRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGG 179 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QAI + ++ P RV Y++ E F AIR + +D R DL+L Sbjct: 180 VGLGKTHLMQAIGHYRLEIDPEARVAYVSTETFTNDLIQAIRKDGMQKFRDRYRAADLIL 239 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ Sbjct: 240 VDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIAD 299 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R +IL + E ++N+ +++ ++A T++ REL+GA + V + Sbjct: 300 IQAPDLETRMAILHKK-----AEHERVNLPRDLIQYLAGRFTSNIRELEGALTRAV---A 351 Query: 384 FAPILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 FA I + E ++ +++ G ++ + VA+ + +S ++ S R R V + R Sbjct: 352 FASITGLPMTVESVAPMLDPAGVEVEVTPAQVLNKVAEVFGVSVEEMKSPSRKRAVSQAR 411 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 QV MYL + T S P IG FG +DH+TV++AV +++K L D L ++V+ ++ L+ Sbjct: 412 QVGMYLMRQGTNLSLPRIGDEFGGKDHSTVMYAVEQIDKKLNADPQLGRQVQQVRDLL 469 >gi|284028000|ref|YP_003377931.1| chromosomal replication initiator protein DnaA [Kribbella flavida DSM 17836] gi|283807293|gb|ADB29132.1| chromosomal replication initiator protein DnaA [Kribbella flavida DSM 17836] Length = 604 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 130/348 (37%), Positives = 201/348 (57%), Gaps = 19/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ GSSNR A AA ++AE Y NP I+ GLGKTHLL AI Sbjct: 263 LNPKYTFETFVIGSSNRFAHAAAVAVAEAPGKAY-----NPQLIYGDSGLGKTHLLHAIG 317 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + RV Y+++E F F +AIRD+ A + R++D+LLIDD+QFL+GK+ Sbjct: 318 HYVRSLYTGARVRYVSSEEFTNDFINAIRDDKASQFQRRYRDVDVLLIDDIQFLEGKIQT 377 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DR P LE+L+ R+R+R + G+ + D E R +IL Sbjct: 378 QEEFFHTFNTLHNANKQIVISSDRAPKRLEALEDRLRNRFEWGLITDIQPPDLETRIAIL 437 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + A +L EVL +A V T+ REL+GA L+ +FA + + + Sbjct: 438 RKKAATE-----RLTAPPEVLEFIASKVQTNIRELEGA---LIRVTAFASLNRQPVDLSL 489 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ G ++ I A ++ +S +DL + R R +V RQ+AMYL + + Sbjct: 490 AEIVLKDLIPEGSKPEVTASMIMGQTASYFGLSIDDLCGSSRSRVLVTARQIAMYLCREL 549 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 T S P+IG++FG RDHTTV+HA RK+ +++ ++ +V EL R+ Sbjct: 550 TDLSLPKIGQQFGGRDHTTVMHAERKIRQLMSERRSVFNQVTELTNRI 597 >gi|317131009|ref|YP_004090323.1| chromosomal replication initiator protein DnaA [Ethanoligenens harbinense YUAN-3] gi|315468988|gb|ADU25592.1| chromosomal replication initiator protein DnaA [Ethanoligenens harbinense YUAN-3] Length = 447 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 116/342 (33%), Positives = 192/342 (56%), Gaps = 20/342 (5%) Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D + F TFI GSSN+ A A+ ++A + Y NPLFI+ GLGKTHLL AI + Sbjct: 111 DYEYTFDTFIVGSSNKFAHAASMAVASTPAMAY-----NPLFIYGGSGLGKTHLLHAIRH 165 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 +K PN +++Y+ E F +IR N + ++ R D+LL+DD+QF+ GK Q Sbjct: 166 EILKNNPNSKILYIKGEDFTNELVESIRQNSQIQFRNKYRQTDVLLVDDIQFVAGKESTQ 225 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H NSL +S KQ+V +DRPP E+++L+ R+R+R + G+ + D+E R +I++ Sbjct: 226 EEFFHTFNSLYESKKQIVLTSDRPPKEIQTLEDRLRTRFEWGLLADIQPPDFETRLAIIR 285 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE-----I 392 + + +NI +EV ++A + + R+L+GA ++ + +LT + I Sbjct: 286 RKAELL-----GINIPDEVDEYIANRLKNNIRQLEGAVKKIKAYN----LLTGDPPSIAI 336 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + ++N + + I+ I V++ + +S +D+ R V RQV+MY+ + + Sbjct: 337 AQNAIRDILNDNQPVPVTIDRIIGEVSRTFGVSADDIKGKMRSGNVSTARQVSMYIIREI 396 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 T S IG +F RDH+TV++A++KVE ++ LK VE Sbjct: 397 TQMSTSAIGEKFNGRDHSTVVYAIQKVEDDMKNKPHLKATVE 438 >gi|313157670|gb|EFR57081.1| chromosomal replication initiator protein DnaA [Alistipes sp. HGB5] Length = 460 Score = 203 bits (517), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 138/461 (29%), Positives = 244/461 (52%), Gaps = 20/461 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 R+K Q + + WFQ + + L VP I+ Y+ + + + + + Sbjct: 8 RIKAQTSEEEFVKWFQPIVPLEFDGTNLRLRVPNESYVHQIEKNYIPFLRPIISQLYGQQ 67 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINT-----NISKSPIILGKQTISPVFGSPLD 159 + V A +V TA + + T +S NT NI +I G + I + L+ Sbjct: 68 TRLHYAVPRSAAQAVPVTADADT-TAISRFNTQTNTANIKNPFVIPGLKKI--IIDPQLN 124 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 F+TFIEG NR+A +A S+A + NPL+I+ + GLGKTH++QAI + Sbjct: 125 PGLTFATFIEGECNRLARSAGMSVAVNPGNN----PFNPLYIYGNSGLGKTHIVQAIGHE 180 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 +R P L+V+Y++ F +F +A ++ + + ID+L+IDD+Q L GK Q+ Sbjct: 181 VRQRHPELQVLYVSMNKFQAQFQTAYKNGEIPDFIHFYQMIDVLIIDDIQELTGKTGTQN 240 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 F ++ N L + KQ++ +D+PP EL+ ++ R+ +R + G+S L D+E + I++ Sbjct: 241 AFFNIFNHLQLAGKQLILTSDKPPVELKDIEQRLLTRFKWGLSAQLNTPDHETKLKIIRV 300 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELL 397 + +QK + I+++V+ ++A ++ + RE++GA + LV SF +T +A E+L Sbjct: 301 K---AQKLGAQ--ISDDVVAYLADNISANVREIEGALSSLVANASFLGRKITTSLAKEIL 355 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 V + K++ I+ I ++V ++ N+ S R R + + RQ+AMYLSK T Sbjct: 356 KVYVQLYQ-KEITIDHIIKVVCEYLNLDFERFNSTERTREIAQARQIAMYLSKQHTKAPL 414 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 IG G R+H TVLH+ + V ++ETD +++VE +++ Sbjct: 415 TTIGSAIGGRNHATVLHSCKAVSNLIETDKAFRRQVEEIEK 455 >gi|166154486|ref|YP_001654604.1| chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|166155361|ref|YP_001653616.1| chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335746|ref|ZP_07223990.1| chromosomal replication initiation protein [Chlamydia trachomatis L2tet1] gi|165930474|emb|CAP03967.1| Chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|165931349|emb|CAP06921.1| Chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 455 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 138/460 (30%), Positives = 232/460 (50%), Gaps = 33/460 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K + + +W ++ + L +P F+++++ + Y + + + Sbjct: 17 IKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIFVQSYLLDNYKKDLCSFVPLDAEGNP 76 Query: 106 GVEILVRSV--ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +E +V + + P V + + P+ T++S N + F L+ + Sbjct: 77 ALEFVVAEIKRSSPLVTPSIAKPA-TEVSEENKD----------------FQLKLNGAYR 119 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ + + Sbjct: 120 FDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLFIHGGVGLGKTHLLHAVGHYVREH 174 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCH 282 NLR+ +T E F+ +R +K+ R++DLLL+DD+QFLQ + + EFC+ Sbjct: 175 HKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQNFEEEFCN 234 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 +L+ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +IL+++ Sbjct: 235 TFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWGLVAHVGVPDLETRVAILQHK--- 290 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLV 401 E LNI E+ ++A V + R+L+GA N+L + F LT + L L Sbjct: 291 --AEQKGLNIPNEMAFYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVRDTLKELF 348 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 +K+ +E I + VA + + DL + R + V RQVAMYL+K + S IG Sbjct: 349 RAPSKQKVSVESILKSVATVFQVKIQDLKGSSRAKNVPLARQVAMYLAKTLITDSLVAIG 408 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG + H+TVL+A + +E+ +E D LK ++ L K I+ Sbjct: 409 AAFG-KTHSTVLYACKTIEQKIEKDALLKNQISLCKNNIA 447 >gi|153951168|ref|YP_001397274.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. doylei 269.97] gi|166201873|sp|A7H194|DNAA_CAMJD RecName: Full=Chromosomal replication initiator protein DnaA gi|152938614|gb|ABS43355.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. doylei 269.97] Length = 440 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 129/462 (27%), Positives = 244/462 (52%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ + Sbjct: 10 LKKELNENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYEVQSGN 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + I +S TK S +T I + I Q S + L+ F Sbjct: 70 KAIINIQAQS---------------TKQSNKSTKIDIAHI----QAQSTI----LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++IA D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAIAHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARTLTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDTSLKAKIEELKNKI 434 >gi|296267999|ref|YP_003650631.1| chromosomal replication initiator protein DnaA [Thermobispora bispora DSM 43833] gi|296090786|gb|ADG86738.1| chromosomal replication initiator protein DnaA [Thermobispora bispora DSM 43833] Length = 527 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/348 (36%), Positives = 212/348 (60%), Gaps = 19/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++++ F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 186 LNAKYTFETFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 240 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + RV Y+++E F F ++IRD+ A + R +D+LL+DD+QFL+GK Sbjct: 241 HYAQSLYDGARVRYVSSEEFTNEFINSIRDHKADEFRARYRAVDILLVDDIQFLEGKEQT 300 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +++KQ+V ++DR P +L +L+ R+R+R + G+ + + E R +IL Sbjct: 301 QEEFFHTFNTLHNASKQIVISSDRAPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 360 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + A+ + L EVL ++A ++T+ REL+GA L+ +FA + + E+ Sbjct: 361 RKK-AVQEG----LAAPPEVLEYIASRISTNIRELEGA---LIRVTAFASLNRQPVDIEL 412 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L++ + ++ I I A+++ +S +DL + R R +V RQ+AMYL++ + Sbjct: 413 AEMVLKDLISEESSPEITISLIMSTTAEYFGVSIDDLCGSSRSRALVTARQIAMYLAREL 472 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 T S P+IG++FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 473 TDLSLPKIGQQFGGRDHTTVMHAERKIRSLMAERRSMYNQVNELTTRI 520 >gi|289705896|ref|ZP_06502275.1| chromosomal replication initiator protein DnaA [Micrococcus luteus SK58] gi|289557381|gb|EFD50693.1| chromosomal replication initiator protein DnaA [Micrococcus luteus SK58] Length = 515 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 201/357 (56%), Gaps = 22/357 (6%) Query: 146 GKQTISPVFGSP----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 GK T +P S L+ R+ F TF+ GSSNR A AA ++AE + Y NPLFI Sbjct: 158 GKPTPAPPSTSAETSRLNDRYHFETFVIGSSNRFAHAAANAVAEAPAKAY-----NPLFI 212 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL AI + + + P LRV Y+ +E F F ++IR + + K RN+D Sbjct: 213 YGESGLGKTHLLHAIGHYARRLYPGLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRNVD 272 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QFL K EF H N+L ++ KQVV +D PP +L + R+RSR + G+ Sbjct: 273 ILLIDDIQFLADKEATVEEFFHTFNTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGL 332 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + D E R +IL+ + E L E L ++A ++T+ REL+GA L+ Sbjct: 333 ITDIQPPDLETRIAILRKK-----AEAEGLVAPPEALEYIASRISTNIRELEGA---LIR 384 Query: 381 RHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 +FA + + E+A+ +L L+ ++ E I +++N++ +L S R R Sbjct: 385 VTAFASLNRQTVDIELAEHVLKDLITDETAHEITPELILHATGEYFNLTLEELTSKSRTR 444 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 T+V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ T+ +V Sbjct: 445 TLVTARQIAMYLLRELTEMSLPKIGQVLGGRDHTTVIHADRKIRELMAERRTIYNQV 501 >gi|294786219|ref|ZP_06751473.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens F0305] gi|294485052|gb|EFG32686.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens F0305] Length = 531 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 123/324 (37%), Positives = 188/324 (58%), Gaps = 19/324 (5%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF++G+SNR A +AA +AE S G TV NPLFI+ GLGKTHLL AI N ++ Sbjct: 190 TFDTFVQGTSNRFAKSAAVMVAE--SPG--TVDYNPLFIYGESGLGKTHLLNAIGNYVLR 245 Query: 223 RQPNLRVVYLTAEYFMWRFASAI----RDNCAL-NLKDSLRNIDLLLIDDMQFLQGKLIQ 277 + P + V Y+TAE F+ F SA+ R AL N RN+D+LL+DD+QF +G Sbjct: 246 QDPTMIVRYVTAEEFVNDFVSALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETM 305 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 +F H N L+ + KQ+V A+D P+ L+ + R+R+R G+ V + + + R +IL+ Sbjct: 306 EQFFHTFNELVSTGKQIVIASDVAPNHLKGFNERLRTRFNNGLVVDVAPPEKDTRLAILR 365 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADE 395 + + S E P +VL ++A +T S REL+GA ++ + P+ T +A++ Sbjct: 366 LKASNSNIEVPA-----DVLDYIADKITDSVRELEGALTRVTAIATLNNQPV-THSLAEQ 419 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L N+ ++ +I VA+HY ++ +D++ R + V RQV+MYL + MT Sbjct: 420 TLHDFFNSD--VEVTPTNIITNVAQHYQLTFDDIVGPSRTKNVAEARQVSMYLIREMTGL 477 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKV 479 S +IG FG RDH+TV+HA +KV Sbjct: 478 SLVDIGEVFGGRDHSTVMHACKKV 501 >gi|302864509|ref|YP_003833146.1| chromosomal replication initiator protein DnaA [Micromonospora aurantiaca ATCC 27029] gi|302567368|gb|ADL43570.1| chromosomal replication initiator protein DnaA [Micromonospora aurantiaca ATCC 27029] Length = 607 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 200/351 (56%), Gaps = 19/351 (5%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ +++F TF+ GSSNR A A+ ++AE + Y NPLFI+ S GLGKTHLL Sbjct: 266 GNRLNPKYMFETFVIGSSNRFAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLH 320 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + V Y++ E F F +++RD+ + R++D+LLIDD+QFL+ + Sbjct: 321 AIGHYATTLGNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENR 380 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E R Sbjct: 381 ERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRI 440 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI- 392 +IL+ + A +L +VL +A V+ S REL+GA L+ +FA + + + Sbjct: 441 AILQKKAAQE-----RLFAPPDVLEFIASRVSNSIRELEGA---LIRVTAFASLTRSSVE 492 Query: 393 ---ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A+E+L + G ++ + I A ++ +S DL + R R +V RQVAMYL Sbjct: 493 LSLAEEVLRDFIPDGAGPEITADQIMVSTADYFGVSLEDLRGHSRSRVLVNARQVAMYLC 552 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 + +T S P IG+ FG RDHTTV+HA RK+ + + +L ++ EL R+ Sbjct: 553 RELTDLSLPRIGQAFGGRDHTTVMHADRKIRQQMAERRSLYNQIAELTNRI 603 >gi|315500819|ref|YP_004079706.1| chromosomal replication initiator protein dnaa [Micromonospora sp. L5] gi|315407438|gb|ADU05555.1| chromosomal replication initiator protein DnaA [Micromonospora sp. L5] Length = 609 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 126/351 (35%), Positives = 200/351 (56%), Gaps = 19/351 (5%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ +++F TF+ GSSNR A A+ ++AE + Y NPLFI+ S GLGKTHLL Sbjct: 268 GNRLNPKYMFETFVIGSSNRFAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLH 322 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + V Y++ E F F +++RD+ + R++D+LLIDD+QFL+ + Sbjct: 323 AIGHYATTLGNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENR 382 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E R Sbjct: 383 ERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRI 442 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI- 392 +IL+ + A +L +VL +A V+ S REL+GA L+ +FA + + + Sbjct: 443 AILQKKAAQE-----RLFAPPDVLEFIASRVSNSIRELEGA---LIRVTAFASLTRSSVE 494 Query: 393 ---ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A+E+L + G ++ + I A ++ +S DL + R R +V RQVAMYL Sbjct: 495 LSLAEEVLRDFIPDGAGPEITADQIMVSTADYFGVSLEDLRGHSRSRVLVNARQVAMYLC 554 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 + +T S P IG+ FG RDHTTV+HA RK+ + + +L ++ EL R+ Sbjct: 555 RELTDLSLPRIGQAFGGRDHTTVMHADRKIRQQMAERRSLYNQIAELTNRI 605 >gi|254424343|ref|ZP_05038061.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7335] gi|196191832|gb|EDX86796.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7335] Length = 460 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 135/463 (29%), Positives = 240/463 (51%), Gaps = 26/463 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E I+ V +L Q+ P + +W + K ++ ++ + L F + W++ YL I+ Sbjct: 6 EDIWNQVLEKLALQLSPPTFETWIKPTKVQTLSNDQLVLLTDNPFARNWLQKHYLTQIST 65 Query: 96 LFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 E V + V+ P A++ S+ S + S ++P Sbjct: 66 AAAEVLGHTINVTVTVKDRDDTEKPLSPSEAANDSLPAASADTRGKASSKTNQSSSALNP 125 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + +FS F+ G++NR+A AA ++AE + NPLF+ VGLGKTHL Sbjct: 126 --------KAIFSRFVVGANNRMAHAAALAVAESPGREF-----NPLFLCGGVGLGKTHL 172 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI + I+ +V Y++ E F ++IR + ++ R +D++L+DD+QF++ Sbjct: 173 MQAIGHYRIESNQQAKVAYVSTETFTNDLIASIRRDTMQRFREQYREVDVILVDDIQFIE 232 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ+V A+DRPP+++ L R+ SR G+ + D+E Sbjct: 233 GKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQIPRLQDRLCSRFSMGLIADIQSPDFET 292 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + Q ++I +V ++A + T+ REL+GA + + S + + +T Sbjct: 293 RMAILQKKAEYEQ-----VSIARDVTEYIASSYVTNIRELEGALTRAIAYTSISGLPMTV 347 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E +L+ V ++ + + + V+ + IS +DL SN R R + + RQV MYL + Sbjct: 348 ENLVPVLNPPVERVDSSP---KSVIKAVSDAFKISLDDLKSNSRKREISQARQVGMYLMR 404 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 T S P+IG +FG +DHTTV+++ K+ ++++ D+ L + V Sbjct: 405 KHTDLSLPKIGDQFGGKDHTTVMYSCDKIAQLIKQDLNLAQTV 447 >gi|224541288|ref|ZP_03681827.1| hypothetical protein CATMIT_00448 [Catenibacterium mitsuokai DSM 15897] gi|224525792|gb|EEF94897.1| hypothetical protein CATMIT_00448 [Catenibacterium mitsuokai DSM 15897] Length = 459 Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 142/455 (31%), Positives = 238/455 (52%), Gaps = 38/455 (8%) Query: 54 VYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 V+ S F + + + +N + +++ + F K +I++ E + F E + G++ ++ Sbjct: 33 VFDSIFTQTEAKELQNNELIITIESVFNKTFIEDAS-EQLEDFFYE----VSGIKATIKV 87 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + E N N +K+P++ K+ I F L + F F+ G+ N Sbjct: 88 MTTQEYE--------------NMNKAKAPVVEVKEEIDD-FDDHLSAELTFDNFVVGNCN 132 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R+A AA ++A + Y NPLF+H++ GLGKTHLL AI N K+ P R++Y Sbjct: 133 RIAQNAALAVA-LKPGTY-----NPLFLHSNSGLGKTHLLNAIGNYVKKKFPGKRILYTN 186 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAK 292 AE F+ + AI +N R++D+LLIDD+QF+ K E F ++ N+L S K Sbjct: 187 AEAFVNDYVEAIGNNTIATFNRRYRSVDVLLIDDIQFIANKEGSMEMFFNIFNTLQHSGK 246 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V +D+PP EL+ ++ R+ SR + G++V + ++E +ILK ++ + P I Sbjct: 247 QIVITSDKPPVELKGMENRLVSRFRQGLTVTIDNPEFETAKAILKKKIESRMIDYP---I 303 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGE-TK 407 +EEVL +A R+L+GA L+F ++ + A E + NT TK Sbjct: 304 DEEVLDFIASHFNKDVRDLEGAVTTLLFYKVVCGQNLDHISLDFALEAFDNPDNTTTVTK 363 Query: 408 KMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR-SFPEIGRRFG 465 K D I+ VA +YN+S L S R ++ R +AMYL + + P S+ +IG+ FG Sbjct: 364 KEATPDTIKETVASYYNLSVTQLTSKSRTNNIITARHIAMYLVRELVPDISYIQIGQEFG 423 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 RDH+T++ A KV+K ++ D K + +L++RL Sbjct: 424 GRDHSTIMKACSKVKKKMKQDPNYKTAINDLMERL 458 >gi|315225750|ref|ZP_07867538.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens DSM 10105] gi|315119882|gb|EFT83014.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens DSM 10105] Length = 613 Score = 203 bits (516), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 123/324 (37%), Positives = 188/324 (58%), Gaps = 19/324 (5%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF++G+SNR A +AA +AE S G TV NPLFI+ GLGKTHLL AI N ++ Sbjct: 272 TFDTFVQGTSNRFAKSAAVMVAE--SPG--TVDYNPLFIYGESGLGKTHLLNAIGNYVLR 327 Query: 223 RQPNLRVVYLTAEYFMWRFASAI----RDNCAL-NLKDSLRNIDLLLIDDMQFLQGKLIQ 277 + P + V Y+TAE F+ F SA+ R AL N RN+D+LL+DD+QF +G Sbjct: 328 QDPTMIVRYVTAEEFVNDFVSALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETM 387 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 +F H N L+ + KQ+V A+D P+ L+ + R+R+R G+ V + + + R +IL+ Sbjct: 388 EQFFHTFNELVSTGKQIVIASDVAPNHLKGFNERLRTRFNNGLVVDVAPPEKDTRLAILR 447 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADE 395 + + S E P +VL ++A +T S REL+GA ++ + P+ T +A++ Sbjct: 448 LKASNSNIEVPA-----DVLDYIADKITDSVRELEGALTRVTAIATLNNQPV-THSLAEQ 501 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L N+ ++ +I VA+HY ++ +D++ R + V RQV+MYL + MT Sbjct: 502 TLHDFFNSD--VEVTPTNIITNVAQHYQLTFDDIVGPSRTKNVAEARQVSMYLIREMTGL 559 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKV 479 S +IG FG RDH+TV+HA +KV Sbjct: 560 SLVDIGEVFGGRDHSTVMHACKKV 583 >gi|229818503|ref|YP_002880029.1| chromosomal replication initiator protein DnaA [Beutenbergia cavernae DSM 12333] gi|229564416|gb|ACQ78267.1| chromosomal replication initiator protein DnaA [Beutenbergia cavernae DSM 12333] Length = 489 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 143/440 (32%), Positives = 233/440 (52%), Gaps = 27/440 (6%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS- 132 L+VP++F K +++ R E I + R + V +V +S+ + Sbjct: 57 LAVPSDFAKEFLETRAREQIMRALAASFGRTLRFAVTVDPSLQDAVPAESSAEEMRDAEA 116 Query: 133 ----PINTNI---SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 PI + ++ + + + G+ L++ + F TF+ GSSNR A AA ++AE Sbjct: 117 AAPEPIERSARAQQRADALASQARTAGSDGARLNATYTFDTFVIGSSNRFAHAAATAVAE 176 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 + Y NPLFI+ GLGKTHLL AI + + + P + V Y+ +E F F ++I Sbjct: 177 APAKAY-----NPLFIYGDSGLGKTHLLHAIGHYAQRLYPGIAVRYVNSEEFTNDFINSI 231 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 RD+ A + R++++LL+DD+QFLQGK EF H N+L ++ KQVV +D P Sbjct: 232 RDDKAEAFQRRYRSVEVLLVDDIQFLQGKEQTMEEFFHTFNTLHNANKQVVITSDVAPKY 291 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 LE R+RSR + G+ + D E R +IL+ + +L+ ++VL ++A + Sbjct: 292 LEGFADRMRSRFEWGLITDIQPPDLETRIAILRKKAG-----SERLSAPDDVLEYIASRI 346 Query: 365 TTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAK 420 +T+ REL+GA L+ +FA + ++ A+ +L L+ +T ++ I A Sbjct: 347 STNIRELEGA---LIRVTAFANLNEQQVDLALAEMVLKDLITDDDTTEITPAVIMAQTAN 403 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV- 479 ++ +S + L S R R +V RQ+AMYL + +T S P+IG+ FG RDHTTV+HA RK+ Sbjct: 404 YFGVSIDALCSADRTRVLVNARQIAMYLCRELTDLSLPKIGQIFGGRDHTTVMHANRKIR 463 Query: 480 EKMLETDITLKKEVELLKRL 499 E M + T + EL R+ Sbjct: 464 ELMAKQRSTFNQVTELTNRI 483 >gi|239916572|ref|YP_002956130.1| chromosomal replication initiator protein DnaA [Micrococcus luteus NCTC 2665] gi|118706|sp|P21173|DNAA_MICLU RecName: Full=Chromosomal replication initiator protein DnaA gi|259645255|sp|C5C7X4|DNAA_MICLC RecName: Full=Chromosomal replication initiator protein DnaA gi|149848|gb|AAA25315.1| DNA biosynthesis initiation protein (dnaA) [Micrococcus luteus] gi|239837779|gb|ACS29576.1| chromosomal replication initiator protein DnaA [Micrococcus luteus NCTC 2665] Length = 515 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 201/357 (56%), Gaps = 22/357 (6%) Query: 146 GKQTISPVFGSP----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 GK T +P S L+ R+ F TF+ GSSNR A AA ++AE + Y NPLFI Sbjct: 158 GKPTPAPPSTSAETSRLNDRYHFETFVIGSSNRFAHAAANAVAEAPAKAY-----NPLFI 212 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL AI + + + P LRV Y+ +E F F ++IR + + K RN+D Sbjct: 213 YGESGLGKTHLLHAIGHYARRLYPGLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRNVD 272 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QFL K EF H N+L ++ KQVV +D PP +L + R+RSR + G+ Sbjct: 273 ILLIDDIQFLADKEATVEEFFHTFNTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGL 332 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + D E R +IL+ + E L E L ++A ++T+ REL+GA L+ Sbjct: 333 ITDIQPPDLETRIAILRKK-----AEAEGLVAPPEALEYIASRISTNIRELEGA---LIR 384 Query: 381 RHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 +FA + + E+A+ +L L+ ++ E I +++N++ +L S R R Sbjct: 385 VTAFASLNRQTVDIELAEHVLKDLITDETAHEITPELILHATGEYFNLTLEELTSKSRTR 444 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 T+V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ T+ +V Sbjct: 445 TLVTARQIAMYLLRELTEMSLPKIGQVLGGRDHTTVIHADRKIRELMAERRTIYNQV 501 >gi|294790224|ref|ZP_06755382.1| DNA-directed DNA replication initiator protein [Scardovia inopinata F0304] gi|294458121|gb|EFG26474.1| DNA-directed DNA replication initiator protein [Scardovia inopinata F0304] Length = 572 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 132/366 (36%), Positives = 202/366 (55%), Gaps = 31/366 (8%) Query: 131 LSPINTNISKS---PIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAAQS 182 LSP++ +I KS I G +S + L+ F TF++G+SNR A +AA Sbjct: 193 LSPVSDHIRKSNQGSISAGSAEVSKNLEARNAVTHLNPFATFDTFVQGTSNRFAKSAAVI 252 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +AE T NPLFI+ GLGKTHLL AI N +++ P + V Y+TAE F+ F Sbjct: 253 VAEAPG----TADYNPLFIYGGSGLGKTHLLNAIGNYVLQQDPTMTVRYVTAEEFVNDFV 308 Query: 243 SAI----RDNCAL-NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAA 297 SA+ R AL N RN+D+LL+DD+QF +G +F H N L + KQ+V A Sbjct: 309 SALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETMEQFFHTFNELTSTGKQIVIA 368 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +D P+ L+ + R+R+R G+ V + + E R +IL RL +S + L + ++VL Sbjct: 369 SDVAPNNLKGFNERLRTRFNKGLVVDVAPPEKETRVAIL--RLKVS---NSNLAVPDDVL 423 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIED 413 ++A +T S REL+GA ++ + A + +T +A++ L N+ ++ Sbjct: 424 DYIADKITDSVRELEGALTRVT---AIATLNDQQVTRTLAEQTLHDFFNSD--VEVTPTS 478 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I VA+HY ++ +D++ R + V RQV+MYL + MT S +IG FG RDH+TV+ Sbjct: 479 IITNVAQHYTLTFDDIVGPSRTKNVAEARQVSMYLIREMTSLSLVDIGEIFGGRDHSTVM 538 Query: 474 HAVRKV 479 HA +KV Sbjct: 539 HACKKV 544 >gi|255534685|ref|YP_003095056.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae bacterium 3519-10] gi|255340881|gb|ACU06994.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae bacterium 3519-10] Length = 488 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 246/466 (52%), Gaps = 43/466 (9%) Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK------------LFQEEHSRIQG 106 F ++ S++ N + L VP++F K +I++ YL ++ +Q ++ G Sbjct: 44 FDNVRPVSLVSNNLTLLVPSDFYKEYIEDNYLSLLSAALKKNIGKGVKLWYQVMENKPAG 103 Query: 107 VEILV------RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 E + +S+A P +++T PS + +N+ ++ G + I+ S L + Sbjct: 104 QEAPITMNMKGKSIATPKMQETLP-PSFS------SNLINPFVVPGMKKIN--IDSNLKA 154 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 F F ++EG SN+ A T A+SIA+ G T NPLF++ G+GKTHL A+ Sbjct: 155 DFSFDNYVEGESNKFASTVARSIAK--RPGATA--FNPLFLYGGYGVGKTHLGHAVGLEV 210 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 P+ V+YL++E F+ +F SA + + + + +D+L+IDD+QFL GK Q Sbjct: 211 KNSYPDKVVLYLSSEKFIQQFVSAAKAHKQTEFANFYQMVDVLIIDDIQFLSGKKSTQDS 270 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H+ + L + KQ++ +D+ P ++ + RI SR + G+S + D++ R I+ ++ Sbjct: 271 FFHIFDYLHQNGKQIILTSDKAPVDILDIQDRIVSRFKWGLSAEIKSPDFDTRRKIIVDK 330 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 L+ + + E++L +A V T+ REL G N ++ +++ + +E++ ELL Sbjct: 331 LSRDG-----IVLTEDMLDFLASEVKTNVRELIGVINSVI---AYSTVYKSELSLELLKE 382 Query: 400 LVN---TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 +N + K + I IQ +V +++ I R LLS R R + PRQ+AMY +K T + Sbjct: 383 TINKIAANQKKVINIPYIQEVVCEYFGIEREQLLSKTRKREIALPRQLAMYFAKEFTNAT 442 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 F +IG G +DH+TV++A ++ + + D LKK V+ L I + Sbjct: 443 FTKIGEEMGGKDHSTVMYACDTIKDVSKIDKELKKYVKELTEKIKQ 488 >gi|297558986|ref|YP_003677960.1| chromosomal replication initiator protein DnaA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843434|gb|ADH65454.1| chromosomal replication initiator protein DnaA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 652 Score = 202 bits (515), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 213/376 (56%), Gaps = 22/376 (5%) Query: 132 SPINTNISKSPI-ILGK-QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 +P+ K+P G+ Q + P + L+ ++ F TF+ GSSNR A A+ + AE + Sbjct: 284 APVEDEAPKAPSSPPGRSQEVPPGEHARLNPKYTFDTFVIGSSNRFAHAASVAAAEAPAK 343 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLFIH GLGKTHLL AI + + + RV Y+++E F F ++IRD Sbjct: 344 AY-----NPLFIHGGSGLGKTHLLHAIGHYTHRLYEGSRVRYVSSEEFTNEFINSIRDGK 398 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 A + R+ID+LL+DD+QFL+ K Q EF H N+L +S KQ+V ++DRPP +L +L Sbjct: 399 ADGFRRRYRDIDVLLVDDIQFLENKEQTQEEFFHTFNTLHNSDKQIVISSDRPPKQLTTL 458 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+RSR + G+ + + E R +IL+ + A L EVL +A ++T+ Sbjct: 459 EDRMRSRFEWGLLTDVQPPELETRIAILRKKAAQE-----GLAAPPEVLEFIASKISTNI 513 Query: 369 RELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 REL+GA L+ +FA + + ++ ++L LV + E ++ I A ++ + Sbjct: 514 RELEGA---LIRVTAFASLNRQSVDLDLTSQVLRDLVPSTEVPEVTAGAIMSQTAAYFGL 570 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + DL R R +V RQ+AMYL + +T S P+IG++FG RDHTTV+HA RKV ++ Sbjct: 571 TVEDLCGTSRSRVLVTARQIAMYLCRELTELSLPKIGQQFG-RDHTTVMHAERKVRGLMA 629 Query: 485 TDITLKKEV-ELLKRL 499 ++ +V EL R+ Sbjct: 630 ERRSIYNQVHELTSRI 645 >gi|120401029|ref|YP_950858.1| chromosomal replication initiation protein [Mycobacterium vanbaalenii PYR-1] gi|166214685|sp|A1T102|DNAA_MYCVP RecName: Full=Chromosomal replication initiator protein DnaA gi|119953847|gb|ABM10852.1| chromosomal replication initiator protein DnaA [Mycobacterium vanbaalenii PYR-1] Length = 494 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/341 (35%), Positives = 201/341 (58%), Gaps = 23/341 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G+SNR A A+ +IAE + Y NPLFI GLGKTHLL A Sbjct: 155 LNRRYTFDTFVIGASNRFAHAASLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAG 209 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + P +RV Y++ E F F +++RD+ + K + R+ID+LL+DD+QF++GK I Sbjct: 210 NYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRRASFKRTYRDIDVLLVDDIQFIEGKDGI 269 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 270 QEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAIL 329 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + + +L++ +VL +A + + REL+GA L+ +FA + + + Sbjct: 330 RKKAQMD-----RLDVPGDVLELIASRIERNIRELEGA---LIRVTAFASLNKTPIDKSL 381 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L++ T ++ I A+++ S +L + R + + RQ+AMYL + + Sbjct: 382 AEIVLRDLISDSSTMQISTAAIMAATAEYFETSVEELRGPGKTRALAQSRQIAMYLCREL 441 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 T S P+IG+ FG RDHTTV++A EK + ++ ++EV Sbjct: 442 TDLSLPKIGQAFG-RDHTTVMYA----EKKIRAEMAERREV 477 >gi|84394505|ref|ZP_00993215.1| chromosomal replication initiation protein [Vibrio splendidus 12B01] gi|84374858|gb|EAP91795.1| chromosomal replication initiation protein [Vibrio splendidus 12B01] Length = 414 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/392 (32%), Positives = 217/392 (55%), Gaps = 31/392 (7%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEE--------HSRIQGVEILV-RSVAL-PSV 119 N + L P F+ W++++YL +I +L QE H I ++ RS A+ P+ Sbjct: 36 NTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGNDIPHLHFEIGSKRVIAPRSEAIAPAR 95 Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPV-----FGSPLDSRFVFSTFIEGSSNR 174 +TA+ + +P ++ P+ + PV S ++ + F+ F+EG SN+ Sbjct: 96 TRTAADVAAESSAPAQLQ-ARKPVHNIWRDEEPVAVDLNHRSNVNPKHKFNNFVEGKSNQ 154 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 + L AA+ +++ Y NPLF++ GLGKTHLL A+ NA + +PN +VVY+ + Sbjct: 155 LGLAAARQVSDNPGTAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHS 209 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q Sbjct: 210 ERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQ 269 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 ++ +DR P E+ ++ R++SR G++V + + E R +IL + + ED ++++ Sbjct: 270 IILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLA 324 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRI 411 +EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I Sbjct: 325 DEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTI 382 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 ++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 383 DNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 414 >gi|281414964|ref|ZP_06246706.1| chromosomal replication initiator protein DnaA [Micrococcus luteus NCTC 2665] Length = 420 Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/357 (37%), Positives = 201/357 (56%), Gaps = 22/357 (6%) Query: 146 GKQTISPVFGSP----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 GK T +P S L+ R+ F TF+ GSSNR A AA ++AE + Y NPLFI Sbjct: 63 GKPTPAPPSTSAETSRLNDRYHFETFVIGSSNRFAHAAANAVAEAPAKAY-----NPLFI 117 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL AI + + + P LRV Y+ +E F F ++IR + + K RN+D Sbjct: 118 YGESGLGKTHLLHAIGHYARRLYPGLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRNVD 177 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QFL K EF H N+L ++ KQVV +D PP +L + R+RSR + G+ Sbjct: 178 ILLIDDIQFLADKEATVEEFFHTFNTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEWGL 237 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + D E R +IL+ + E L E L ++A ++T+ REL+GA L+ Sbjct: 238 ITDIQPPDLETRIAILRKK-----AEAEGLVAPPEALEYIASRISTNIRELEGA---LIR 289 Query: 381 RHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 +FA + + E+A+ +L L+ ++ E I +++N++ +L S R R Sbjct: 290 VTAFASLNRQTVDIELAEHVLKDLITDETAHEITPELILHATGEYFNLTLEELTSKSRTR 349 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 T+V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ T+ +V Sbjct: 350 TLVTARQIAMYLLRELTEMSLPKIGQVLGGRDHTTVIHADRKIRELMAERRTIYNQV 406 >gi|238926597|ref|ZP_04658357.1| DNA-directed DNA replication initiator protein [Selenomonas flueggei ATCC 43531] gi|238885543|gb|EEQ49181.1| DNA-directed DNA replication initiator protein [Selenomonas flueggei ATCC 43531] Length = 473 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 134/470 (28%), Positives = 245/470 (52%), Gaps = 32/470 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E N S++ V + + W R+ S+ +N + L+V F K +I+ RYL Sbjct: 4 EKNLTSLWQKVLKETDGILPKEAIKQWILRIVPISLENNELVLAVADEFTKQYIEPRYLV 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVAL---------PSVEKTASSPSITKLSPINTNISKSP 142 + + + ++V VA P+ + P+ + +P ++ +P Sbjct: 64 LLGDAVHQALGAKYKITLIVAPVASEEKDNAEIEPAAPASLKEPA-EEAAPAQGSLPLTP 122 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 +P + L+ ++ F F+ G SN+ A+++A D+ G + NPLFI+ Sbjct: 123 --PETHAAAPDDTTTLNPKYTFEAFVTGRSNQFPYAMAKAVA--DAPGLPS--HNPLFIY 176 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+ A+ + + P RV+Y+ + F F +IR+ ++ +ID+ Sbjct: 177 GGVGLGKTHLMHAVGHKILADDPKKRVLYIASTDFTNEFIRSIREKNMDAFREKYYSIDV 236 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF G+ Q EF N L D+ Q++ +DR P +++ L+ R+ SR GG Sbjct: 237 LLIDDIQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQDVKGLEDRLISRFAGGAP 296 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + ++E R +IL+ + +Q ED ++I +V+ ++A V ++ REL+GA +L+ Sbjct: 297 VDIQPPEFETRVAILQKK---AQSED--VDIPADVVTYIASRVDSNIRELEGALTRLI-- 349 Query: 382 HSFAPILTAEIADEL-----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 +A + I DE L + + + +++ +E I+R+V H+ ++ D+ S +R Sbjct: 350 -KYASTMRMPI-DETTCVAALGNYLRGEKGRRITMEMIERIVCTHFKVTSEDIRSTKRSN 407 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 + PRQ+AMYL +T S+P IG F ++DH+T++HA +K++K++E++ Sbjct: 408 DIAYPRQIAMYLCHELTDVSWPTIGGFF-NKDHSTIIHAHKKIQKLIESN 456 >gi|283956179|ref|ZP_06373664.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792333|gb|EFC31117.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni 1336] Length = 440 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 242/462 (52%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ + Sbjct: 10 LKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYEVQSGN 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + I +S TK S +T I + I ++P F Sbjct: 70 KAIINIQAQS---------------TKQSNKSTKIDIAHIKAQSTILNP--------SFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A +++A D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAVAHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARTLTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKI 434 >gi|218960351|ref|YP_001740126.1| chromosomal replication initiation protein [Candidatus Cloacamonas acidaminovorans] gi|167729008|emb|CAO79919.1| chromosomal replication initiation protein [Candidatus Cloacamonas acidaminovorans] Length = 443 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/458 (29%), Positives = 225/458 (49%), Gaps = 46/458 (10%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ + +L+ + P + +WF + + + + V T F ++ Y E + + Sbjct: 3 QDIWQNILDKLEENINPQSFKTWFSDTRLVDMNDRELMIRVATQFSANYLNQNYKEVLGE 62 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + R V+ + + + EK SI ++S N+ Sbjct: 63 ISYGLYGRKYDVQFITQPHRNHNKEKDVQDYSIKRVS---ANVR---------------- 103 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R+ F F+ G +N A +AA+++AE S GYT NPLFI+ G+GKTHL+QA Sbjct: 104 --LNERYTFDEFVVGKNNNFAYSAAKAVAE--SPGYT---YNPLFIYGESGMGKTHLMQA 156 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N +K N + Y+T+E F IR N + R +DLLL+DD+ FL K Sbjct: 157 IGNYILKEGRNCSIYYITSEAFTNEMIDGIRSNKMPEFRAKFRKVDLLLMDDIHFLSRKE 216 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V +DRPP ++ L+ R+ +R + G+ L D+E R + Sbjct: 217 GTQEEFFHTFNALFENKKQIVLTSDRPPKDIPDLEKRLVTRFESGLLCDLKSPDFETRVA 276 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI------- 387 IL+ + E + +++ + +A +T+S R L+G+ +++ S+ + Sbjct: 277 ILRKK-----AEPENVVLSDAIFNFIADNITSSVRALEGSLIRILAFSSYNKLNPEDIDI 331 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 L AEI +++S V++ + ++ I V + Y I+ LL R V PRQVAM Sbjct: 332 NLAAEILSDMISEKVHS-----ITLDAITEKVCECYGITPAQLLEKTRKPQVAFPRQVAM 386 Query: 447 YLSKIMTPR-SFPEIGRRFGDRDHTTVLHAVRKVEKML 483 YL+ + P+ S +I + +DHTTVLHA + VE Sbjct: 387 YLANYLIPQLSLKDIAEYYNRKDHTTVLHAKKMVENQF 424 >gi|119964126|ref|YP_945834.1| chromosomal replication initiator protein DnaA [Arthrobacter aurescens TC1] gi|119950985|gb|ABM09896.1| chromosomal replication initiator protein DnaA [Arthrobacter aurescens TC1] Length = 472 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 129/352 (36%), Positives = 205/352 (58%), Gaps = 20/352 (5%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 FG L+ +++F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL Sbjct: 128 FGR-LNPKYIFDTFVIGSSNRFAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLL 181 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + + +RV Y+ +E F F ++IRD+ + K + RN+D+LLIDD+QFL G Sbjct: 182 HAIGHYARRLYSGIRVRYVNSEEFTNDFINSIRDDEGTSFKTTYRNVDVLLIDDIQFLAG 241 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQVV +D+PP L + R+ SR + G+ + + E R Sbjct: 242 KDRTQEEFFHTFNALHNANKQVVITSDQPPKMLAGFEDRMTSRFEWGLLTDIQPPELETR 301 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----L 388 +IL+ + +S+ L+ ++ L ++A ++++ REL+GA L+ +FA + + Sbjct: 302 IAILRKK-GLSEG----LSAPDDALEYIASKISSNIRELEGA---LIRVTAFASLNRQPV 353 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 +A+ +L L+ +++ + I A ++ +S +L S R RT+V RQ+AMYL Sbjct: 354 DVALAEMVLKDLITDDGAQEITAKQILDQTADYFKLSMEELCSKSRTRTLVTARQIAMYL 413 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 + +T S P+IG+ G RDHTTV+HA RK+ E M E + + EL R+ Sbjct: 414 CRELTDMSLPKIGQELGGRDHTTVIHADRKIRELMAERRVIYNQVTELTNRI 465 >gi|332830222|gb|EGK02850.1| chromosomal replication initiator protein DnaA [Dysgonomonas gadei ATCC BAA-286] Length = 467 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 134/477 (28%), Positives = 247/477 (51%), Gaps = 27/477 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 L NC ++ +++ + + +WF + S + + + VP+ F +++++++ Sbjct: 9 LWANCLTV-------IQDNIPEAAFKTWFLPIVPLSYENKVFTIQVPSQFFYEYLEDKFV 61 Query: 91 ETITKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPS--ITKLSPINTNISKSPIILG 146 + + E R I IL+ + V+ + + + K S +TN +P Sbjct: 62 DLLKTTLHREIGRDTILQYRILMENTTNTVVDYRGDAKTLPVDKGSVKSTNKVPNPF--- 118 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 ++ ++ F S L+ ++ F F EG SN++A TA ++I + + G T NPLF+H + G Sbjct: 119 QKVVADDFDSQLNLKYTFDNFFEGESNKLARTAGETITK--NPGKTA--FNPLFLHGTSG 174 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHL AI + P RV+Y++A F ++A A R N + + + ID+L+ID Sbjct: 175 VGKTHLCHAIGTRIKELYPEKRVLYVSAHLFKIQYADAGRYNTTNDFINFYQGIDVLIID 234 Query: 267 DMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+ L G + Q+ H+ N L + KQ++ +D+ PSEL+ ++ R+ +R + G++ + Sbjct: 235 DIHELAGIERTQNTLFHIFNHLHQNNKQLILTSDKSPSELQGVEERLLTRFRWGLTTKID 294 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-- 383 D +R IL+N++ L+I E+V+ ++A VT + R+L+G + HS Sbjct: 295 HPDKGLRLKILQNKIL-----HDGLSIPEDVVDYIAENVTDNARDLEGIIVS-IMAHSLV 348 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + +A ++ + E KK+ I I+ +V YNI + + R R +V+ RQ Sbjct: 349 YNKEIDLPLARRVIGQAIKKIEAKKITISAIESVVCDFYNIKSELIHTASRKRQIVQARQ 408 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 V MYLSK T S +IG G ++H TVLHA + V++ +E D + E+ +++ I Sbjct: 409 VTMYLSKSYTEMSLAQIGSLIGKKNHATVLHACKTVKEQMEVDKVFRDEIAEIEKKI 465 >gi|886325|gb|AAB53141.1| chromosomal replication initiator protein [Mycobacterium leprae] Length = 521 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 142/447 (31%), Positives = 244/447 (54%), Gaps = 41/447 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W ++ +++ LSVP++F++ I+ IT Q +++ VR +A Sbjct: 65 AWLNLVQPLTIIEGFALLSVPSSFVQNEIERHLRTPITDALSRRLG--QQIQLGVR-IAP 121 Query: 117 PS---VEKTASSPSITKLSPINTNISKS---PIILGKQTISPVF-------------GSP 157 PS ++ +SS + T+ ++ P+ Q + F G+ Sbjct: 122 PSTDHIDDNSSSADVLLTDDCGTDTDENYGEPLTGEYQGLPTYFTERPHHTESTVTGGTS 181 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL A Sbjct: 182 LNRRYTFETFVIGASNRFAHRAALAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++GK I Sbjct: 237 NYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGI 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 297 QEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +Q E +L + +VL +A ++ + REL+GA L+ +FA + + + Sbjct: 357 RKK---AQME--RLAVPGDVLELIASSIERNIRELEGA---LIRVTAFASLNKTAIDKAL 408 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL + + Sbjct: 409 AEIVLRDLIADASTMQISAATIMTATAEYFDTTIEELRGPGKTRALAQSRQIAMYLCREL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T S P+IG+ FG RDHTTV++A RK+ Sbjct: 469 TDLSLPKIGQAFG-RDHTTVMYAQRKI 494 >gi|296137751|ref|YP_003644994.1| chromosomal replication initiator protein DnaA [Tsukamurella paurometabola DSM 20162] gi|296025885|gb|ADG76655.1| chromosomal replication initiator protein DnaA [Tsukamurella paurometabola DSM 20162] Length = 490 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/329 (38%), Positives = 201/329 (61%), Gaps = 19/329 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 152 LNQKYTFETFVIGASNRFAHAAAFAVAEAPARAY-----NPLFIWGESGLGKTHLLHAAG 206 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + + P +RV Y++ E F F ++++D+ + K R++D+LL+DD+QFL+GKL I Sbjct: 207 HYAQRLFPGMRVKYVSTEEFTNDFINSLKDDRQVQFKQRYRDVDILLVDDIQFLEGKLGI 266 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E+R +IL Sbjct: 267 QEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEDRLRTRFEWGLITDVQPPELEIRMAIL 326 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 L +Q E ++++ +VL +A + + REL+GA L+ +FA + +T E+ Sbjct: 327 ---LKKAQME--RIHVPHDVLELIATRIDRNIRELEGA---LIRVTAFASLTQTDVTYEL 378 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L LV T ++ I +VA+++ I+ DL R R V RQ+AMYL + + Sbjct: 379 AEMVLRDLVPDTTTIEISSSTILSVVAEYFEITVADLKGTERARAVTHARQIAMYLCREL 438 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 T S P+IG+ F DRDHTTV++A RK+ K Sbjct: 439 TELSLPKIGQIF-DRDHTTVMYAERKIRK 466 >gi|157149691|ref|YP_001449323.1| chromosomal replication initiation protein [Streptococcus gordonii str. Challis substr. CH1] gi|157074485|gb|ABV09168.1| chromosomal replication initiator protein DnaA [Streptococcus gordonii str. Challis substr. CH1] Length = 450 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 205/366 (56%), Gaps = 15/366 (4%) Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 S+ P + K+ SP + L S++ F F++G N+ A AA ++A+ Y NP Sbjct: 95 SQQPDLTEKKK-SPPLATGLKSKYTFENFVQGDGNQWAKAAALAVADNLGGIY-----NP 148 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFI+ GLGKTHLL AI N ++ P+ R+ Y+ AE F+ F +R + K R Sbjct: 149 LFIYGGPGLGKTHLLNAIGNEVLENTPDARIKYVPAETFINDFLEHLRLGEMDSFKKIYR 208 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ++DLLLIDD+Q L K+ Q EF + N+L KQ+V +DR P LE+L+ R+ +R + Sbjct: 209 SLDLLLIDDIQALSKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDYLENLEERLVTRFK 268 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G++ + ++E R +IL+N++ E+ L E + ++A ++ R+L+GA Sbjct: 269 WGLTSDITPPNFETRIAILRNKI-----EEFDLIFPNETIEYLAGQFDSNVRDLEGALKD 323 Query: 378 LVFRHSFAPI--LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 + S I +T +IA E + G + + I+ IQ V Y +S ++ RR Sbjct: 324 INLLASMKQIKEITIDIAAEAIRSRKQAGSQLLVIPIDRIQTEVGNFYGVSVKEMKGTRR 383 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 V+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ MLE D L+ E+E Sbjct: 384 VQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKSMLEEDDNLRLEIE 443 Query: 495 LLKRLI 500 +K I Sbjct: 444 SIKNKI 449 >gi|29347553|ref|NP_811056.1| chromosomal replication initiation protein [Bacteroides thetaiotaomicron VPI-5482] gi|253572014|ref|ZP_04849418.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 1_1_6] gi|298383755|ref|ZP_06993316.1| ATPase involved in DNA replication initiation [Bacteroides sp. 1_1_14] gi|38257553|sp|Q8A5U5|DNAA_BACTN RecName: Full=Chromosomal replication initiator protein DnaA gi|29339453|gb|AAO77250.1| chromosomal replication initiator protein dnaA [Bacteroides thetaiotaomicron VPI-5482] gi|251838194|gb|EES66281.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 1_1_6] gi|298263359|gb|EFI06222.1| ATPase involved in DNA replication initiation [Bacteroides sp. 1_1_14] Length = 470 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 136/485 (28%), Positives = 255/485 (52%), Gaps = 39/485 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLEV +K+ V Y +WF + + + +P+ F ++ + Sbjct: 12 RCLEV------------IKDNVPETTYNTWFAPIVPLKYEDKTLIVQIPSQFFYEILEEK 59 Query: 89 YLETITKLFQE---EHSRIQGVEILVRSVALPS----VEKTASSPSITKLSPINTNISKS 141 +++ + K + E +++ ++V ++P+ +E + S ++T S + N K+ Sbjct: 60 FVDLLRKTLYKAIGEGTKLM-YNVMVDKTSIPNQTVNLEASNRSTAVTPKSIVGGN--KA 116 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P L + + L+ + F FIEG SN+++ + A+++A+ + NPLF+ Sbjct: 117 PSFLKAPAVQDL-DPHLNPNYNFENFIEGYSNKLSRSVAEAVAQNPA----GTAFNPLFL 171 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + + G+GKTHL AI + + RV+Y++A F ++ ++R+N + + + ID Sbjct: 172 YGASGVGKTHLANAIGTKIKELYADKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTID 231 Query: 262 LLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 232 VLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLLTRFKWGM 291 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 L E+R +IL+N++ + P EV+ ++A V S R+L+G ++ Sbjct: 292 VAELEKPTVELRKNILRNKIHRDGLQFPP-----EVIDYIAENVNESVRDLEGIVIAIMA 346 Query: 381 RHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 R + I EI +L H+V+ ETK + I+DI ++V KH+++ + + + R R Sbjct: 347 RST---IFNKEIDLDLAQHIVHGVVHNETKAVTIDDILKVVCKHFDLEASAIHTKSRKRE 403 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ+AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + + EV+ ++ Sbjct: 404 VVQARQIAMYLAKNYTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFQAEVQEIE 463 Query: 498 RLISE 502 L+ + Sbjct: 464 SLLKK 468 >gi|289642466|ref|ZP_06474611.1| chromosomal replication initiator protein DnaA [Frankia symbiont of Datisca glomerata] gi|289507725|gb|EFD28679.1| chromosomal replication initiator protein DnaA [Frankia symbiont of Datisca glomerata] Length = 500 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 145/465 (31%), Positives = 240/465 (51%), Gaps = 38/465 (8%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR----------IQG 106 +W + + ++ + L+ P F K + +R ++ + R + Sbjct: 45 AWLRLTRPLGLVQDTALLAAPNEFTKDLLDSRLRPFLSTALSTAYGREIRVAVTVEHLPD 104 Query: 107 VEILVRSVALP----SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP--LDS 160 E + + LP V +++P+++ S +T ++ LG+ +P P L+ Sbjct: 105 PEPMTGPIQLPLPTSPVSPVSATPAVSAASAADT--ARITPGLGRDP-APRSYEPTRLNP 161 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 R+VF TF+ G SNR AA ++AE + Y NPLFI+ GLGKTHLL AI + + Sbjct: 162 RYVFETFVIGDSNRFPHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIGHYT 216 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 +K P RV Y+++E F F ++IRD+ + R+ D+LL+DD+QFL+ K Q E Sbjct: 217 LKLYPESRVKYVSSEEFTNDFINSIRDDRQQAFQRRYRDTDVLLVDDIQFLENKERTQEE 276 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N L D+ KQ+V ++DR P +L +L+ R+RSR + G+ + D E R +IL + Sbjct: 277 FFHTFNVLHDTEKQIVISSDRSPKQLSALEDRLRSRFEWGLITDVTPPDLETRIAILSKK 336 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADE 395 A +L + +VL ++A + + REL+GA L+ +FA + + + A+ Sbjct: 337 AATE-----RLPVPGDVLEYIATHIERNIRELEGA---LIRVAAFASLNKSHVDRTLAEI 388 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L L+ ++ I A ++ +S DL R R +V RQ+AMYL + +T Sbjct: 389 VLRDLIPDAADPEITAAAIMNATATYFGVSMEDLCGTSRSRVLVTARQIAMYLCRELTDL 448 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 S P+IG+ FG RDHTTV+HA RK+ ++ + +V EL R+ Sbjct: 449 SLPKIGQHFGGRDHTTVMHADRKIRGLMAERRAIYNQVTELTNRI 493 >gi|220910784|ref|YP_002486093.1| chromosomal replication initiator protein DnaA [Arthrobacter chlorophenolicus A6] gi|219857662|gb|ACL38004.1| chromosomal replication initiator protein DnaA [Arthrobacter chlorophenolicus A6] Length = 473 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/352 (37%), Positives = 206/352 (58%), Gaps = 20/352 (5%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 FG L+ ++VF TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL Sbjct: 129 FGR-LNPKYVFDTFVIGSSNRFAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLL 182 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + + +RV Y+ +E F F ++IRD+ + K + RN+D+LLIDD+QFL G Sbjct: 183 HAIGHYARRLYSGIRVRYVNSEEFTNDFINSIRDDEGASFKTTYRNVDVLLIDDIQFLAG 242 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K EF H NSL ++ KQVV +D+PP L + R++SR + G+ + + E R Sbjct: 243 KDRTLEEFFHTFNSLHNNNKQVVITSDQPPKLLAGFEDRMKSRFEWGLLTDIQPPELETR 302 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----L 388 +IL+ + A+S+ L+ ++ L ++A ++++ REL+GA L+ +FA + + Sbjct: 303 IAILRKK-ALSEG----LSAPDDALEYIASKISSNIRELEGA---LIRVTAFASLNRQPV 354 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 +A+ +L L+ +++ I + A ++ +S +L S R RT+V RQ+AMYL Sbjct: 355 DVALAEMVLKDLITDDGAQEITSGQILQQTADYFKLSMEELCSKSRTRTLVTARQIAMYL 414 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 + +T S P+IG+ G RDHTTV+HA RK+ E M E + + EL R+ Sbjct: 415 CRELTDMSLPKIGQELGGRDHTTVIHADRKIRELMAERRVIYNQVTELTNRI 466 >gi|187918302|ref|YP_001883865.1| chromosomal replication initiator protein DnaA [Borrelia hermsii DAH] gi|226735782|sp|B2S0D9|DNAA_BORHD RecName: Full=Chromosomal replication initiator protein DnaA gi|119861150|gb|AAX16945.1| chromosomal replication initiator protein DnaA [Borrelia hermsii DAH] Length = 484 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/476 (26%), Positives = 241/476 (50%), Gaps = 32/476 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++I++++ + ++ ++ + + WF+ L F + +S P +F K ++ R+ + I + Sbjct: 5 KNIWSLILAAIRKELSEEEFYIWFENLYFIDATDENIKISAPNSFHKNQVEKRFAKRIKE 64 Query: 96 LFQEEHSRIQGVEIL------------VRSVALPSVEKTASSPSITKLSPINTN--ISKS 141 + E+ VE + ++++L + SP I+T I + Sbjct: 65 ILIEKGHNTINVEFINSPNDSKTHNMESKNISLKDISTQQDSPEKRTTFKIHTKNIIEST 124 Query: 142 PIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 K+ I + +P L ++ F FI G +N++A A+ SIA+ Y NP Sbjct: 125 KQYTTKEEIHTKYRNPFLKKKYTFENFITGPNNKLAYNASLSIAKNPGKKY-----NPCL 179 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHLLQ+I N + + +++Y+TAE F+ F +I+ N K R + Sbjct: 180 IYGGVGLGKTHLLQSIGNKTEELHKEFKILYVTAENFLNEFVESIKTNETKRFKKKYRYL 239 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LL+DD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR G Sbjct: 240 DMLLLDDIHDLQKKEGIQEELFHTFNALYEDNKQMVFTCDRQPSELINFTDRLKSRFTRG 299 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A +L Sbjct: 300 LNVDISKPNFELRVAIIEKKA-----EEDGIKVPKSILNLVAKKVTTNIRDLEAAVTKLK 354 Query: 380 FRHSFAPI-LTAEIADELLSHLV-----NTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 I + D+++ ++ NT K+ IE I++++ + ++ D+ N Sbjct: 355 AHIDLEDIEIDTSTVDKIIKEIIVYENDNTNTHNKINIESIKKVILRELKLTNKDIEGNS 414 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 + + + R + YL + T S EIG+ G + H+TVL+++ K++K D+ + Sbjct: 415 KKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDKERNNDLEI 470 >gi|86154004|ref|ZP_01072206.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842542|gb|EAQ59755.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni HB93-13] Length = 440 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/462 (27%), Positives = 241/462 (52%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ + Sbjct: 10 LKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYEAQSGN 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + I +S K S +T I + I ++P F Sbjct: 70 KAIINIQAQSA---------------KQSNKSTKIDIAHIKAQSTILNP--------SFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++IA D G NP+FI+ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAIAHKDKLGKL---YNPIFIYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|72160407|ref|YP_288064.1| chromosomal replication initiation protein [Thermobifida fusca YX] gi|123774818|sp|Q47U23|DNAA_THEFY RecName: Full=Chromosomal replication initiator protein DnaA gi|71914139|gb|AAZ54041.1| bacterial chromosomal replication initiator protein, DnaA [Thermobifida fusca YX] Length = 615 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 207/362 (57%), Gaps = 22/362 (6%) Query: 146 GKQTISPVFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 G + +P G P L+ ++ F TF+ GSSNR A AA ++AE + Y NPLF++ Sbjct: 257 GDGSTNPTSGGPDQLNPKYTFDTFVIGSSNRFAHAAAVAVAEAPAKAY-----NPLFVYG 311 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 GLGKTHLL AI + + + RV Y+++E F F ++IRD A + R+ID+L Sbjct: 312 GSGLGKTHLLHAIGHYTQRLYEGARVRYVSSEEFTNEFINSIRDGKADGFRRRYRDIDVL 371 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+QFL+ K Q EF H N+L +S KQ+V ++DRPP +L +L+ R+R+R + G+ Sbjct: 372 LVDDIQFLENKEQTQEEFFHTFNTLHNSNKQIVISSDRPPKQLVTLEDRLRNRFEWGLIT 431 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + + E R +IL+ + A LN EVL +A ++T+ REL+GA L+ Sbjct: 432 DVQPPELETRIAILRKKAAQE-----GLNAPPEVLEFIASKISTNIRELEGA---LIRVT 483 Query: 383 SFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +FA + + + +L L+ E ++ +I A ++ ++ DL R R + Sbjct: 484 AFASLNRQSVDLHLTSIVLRDLIPNDEVPEITAAEIMAQTASYFGLTPEDLCGTSRSRVL 543 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLK 497 V RQ+AMYL + +T S P+IG++FG RDHTTV+HA RK+ ++ ++ +V EL Sbjct: 544 VTARQIAMYLCRELTDLSLPKIGQQFG-RDHTTVMHADRKIRSLMAERRSIYNQVTELTN 602 Query: 498 RL 499 R+ Sbjct: 603 RI 604 >gi|88597701|ref|ZP_01100934.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 84-25] gi|218561694|ref|YP_002343473.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14194686|sp|Q9PJB0|DNAA_CAMJE RecName: Full=Chromosomal replication initiator protein DnaA gi|88190005|gb|EAQ93981.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359400|emb|CAL34182.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315930328|gb|EFV09416.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 305] Length = 440 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/462 (27%), Positives = 246/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSAKQSNKSTKI--------DIAH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++IA D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAIAHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKI 434 >gi|257124815|ref|YP_003162929.1| chromosomal replication initiator protein DnaA [Leptotrichia buccalis C-1013-b] gi|257048754|gb|ACV37938.1| chromosomal replication initiator protein DnaA [Leptotrichia buccalis C-1013-b] Length = 451 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 203/363 (55%), Gaps = 21/363 (5%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K+ S ++ + L+ + F FI G ++++A A ++ + Y NPLFI+ S G Sbjct: 98 KEKSSAIY-TGLNPKHRFDNFIVGENSKLAYNACLAVVNNPTPVY-----NPLFIYGSSG 151 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QA+ N ++ PN RV Y T+E F F + + +D+ R +D+LL+D Sbjct: 152 LGKTHLMQAVGNEILENNPNKRVYYSTSEEFANEFFKVLNGGRIQHFRDTFRALDVLLLD 211 Query: 267 DMQFLQ---GK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 D+QF + G+ ++ EF H N L + KQ++ +D+ P E+++L R+ SR G+ Sbjct: 212 DIQFFEKVFGRGEGTVEEEFFHTFNKLQELGKQIIMISDKSPKEIKNLSKRLESRFLSGL 271 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + +E R ILKN +++ +D + I++ +L +++ ++ T+ REL+G L Sbjct: 272 TVEIQSPGFETRMMILKN---MAKTQD--IEIDDSILEYISDSLNTNVRELEGTLTNLNA 326 Query: 381 RHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 R +T ++ E+L H V E K+ + + ++ Y +S ND++S +R + VV Sbjct: 327 RAKLLNEKITLQLVQEMLMHNVKR-EQSKITAKKVMEQISSQYGVSINDMISKKRQKKVV 385 Query: 440 RPRQVAMYLSKIMT--PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 RQ+AMYL K S IG FG +DH+TV+ ++RKVEK D+ KKE+++L Sbjct: 386 ETRQIAMYLLKNNDDLDLSLTAIGGLFGGKDHSTVISSIRKVEKKTREDVLFKKEIDMLN 445 Query: 498 RLI 500 + I Sbjct: 446 KKI 448 >gi|325278758|ref|YP_004251300.1| Chromosomal replication initiator protein dnaA [Odoribacter splanchnicus DSM 20712] gi|324310567|gb|ADY31120.1| Chromosomal replication initiator protein dnaA [Odoribacter splanchnicus DSM 20712] Length = 474 Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 143/482 (29%), Positives = 252/482 (52%), Gaps = 28/482 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E ++I+ S ++ QV P+ + + F+ ++ +++ + V + ++ ++ Y+ Sbjct: 1 MEKEGKNIWLKCLSLIQKQVLPEKFKTLFEPIRAVRFKDDVLTIQVASAYVYEVLEGEYI 60 Query: 91 ETITKLFQE--------EHS----RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNI 138 + + + +S R + E L ++A V K ASS L + Sbjct: 61 DILKSALKAVIGPNAKLAYSVVVERSKPSEPLTTTLASNPVRKPASS--TVYLDQTGHST 118 Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 K+P I S L+ + ++IEG+ NR+A +A +IA+ G T NP Sbjct: 119 LKNPFERASNQIQ--IDSQLNPSYTMESYIEGNCNRLARSAGMAIAQ--KPGGTA--FNP 172 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L I+ GLGKTHL QAI + PN V+Y++ F +F A+R N + + Sbjct: 173 LLIYGGSGLGKTHLAQAIGLEVKQNFPNKVVLYVSTNIFQTQFTEAVRRNEVNDFLHFYQ 232 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ID+L++DD+Q L GK Q+ F H+ N L S KQ++ D+ P+ELE ++ R+ SR + Sbjct: 233 LIDVLILDDIQELAGKTGTQNTFFHIFNHLHQSGKQLILTCDKAPAELEGMEDRLLSRFR 292 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+S + D++ R I+ N+ ++K+ ++ +EEV+ ++ + V + REL+GA Sbjct: 293 WGLSAEIKAPDFDTRKEIVLNK---ARKDG--IDFSEEVIEYICKYVDHNVRELEGAMIS 347 Query: 378 LVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+ + +F LT ++ ++L +V T+++ ++ IQ +V +H+NI L + R R Sbjct: 348 LLAQSTFNKRDLTVDVVRDILGKMVKK-PTEELTVDKIQEVVCEHFNIPSELLQTKTRKR 406 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 VV+ RQ+AMY K T S IG + G +DH TVL+A + V ++ETD K +VE + Sbjct: 407 EVVQARQLAMYFCKNYTKYSLSYIGSQIGKKDHATVLYACKAVTDLIETDRNFKIQVEEI 466 Query: 497 KR 498 +R Sbjct: 467 QR 468 >gi|269118643|ref|YP_003306820.1| chromosomal replication initiator protein DnaA [Sebaldella termitidis ATCC 33386] gi|268612521|gb|ACZ06889.1| chromosomal replication initiator protein DnaA [Sebaldella termitidis ATCC 33386] Length = 452 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 139/471 (29%), Positives = 243/471 (51%), Gaps = 47/471 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY----LETITKLFQEEH 101 LK Q+ + ++ + L H N +++ V + F+K ++ RY +E I + E Sbjct: 15 LKYQIDEVEFNTYIKPLNVHEYKDNTLYVWVESTFMKEKVEQRYKLNMMEIINDILMMEA 74 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 S+ + ++ A E S T+ IN L+ R Sbjct: 75 SQRINIIFELKQAAEEKFENYISVMD-TQKKLINN---------------------LNQR 112 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ G N +A A +I++ Y NPL I+ GLGKTHL+ A+ NA + Sbjct: 113 YRFENFVVGKGNELANAACIAISQNPGIVY-----NPLLIYGGSGLGKTHLMHAVGNAIL 167 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQGKL--- 275 + PN +V+Y T+E F F +++R N +D R +D+LLIDD+QF + Sbjct: 168 DKDPNKKVLYCTSENFNNEFINSLRAGQFANVQNFRDKFRTLDVLLIDDIQFFEKVFGQG 227 Query: 276 ---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 ++ EF H N+L + KQ++ ++DR P E+ +L RI SR G+SV + DYE R Sbjct: 228 TGSVEEEFFHTFNTLQELGKQIIMSSDRLPREIRNLSKRIESRFDSGLSVDVQKPDYETR 287 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +ILKN +A S+ + I++EVL ++ +++++ REL+GA +++ R + +T + Sbjct: 288 LAILKN-IADSKS----VIISDEVLEFISSSISSNIRELEGALTRVIARSTLLRKAITLQ 342 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E L+ L+ ++K + I V+ +Y+I +++ +R + + RQ+AM+L K Sbjct: 343 LVQEDLADLLKKQQSK-ITANKIITTVSGYYSIPLDEMKGKKRQQEITNARQIAMFLLKD 401 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + IG FG RDH+TV+ ++RK+E ++ +I KKE++ +K+ I E Sbjct: 402 QLDLNLTTIGGLFGGRDHSTVISSIRKIETRMKEEIVFKKEIDNIKQKIVE 452 >gi|260904981|ref|ZP_05913303.1| chromosomal replication initiator protein DnaA [Brevibacterium linens BL2] Length = 544 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/353 (35%), Positives = 200/353 (56%), Gaps = 24/353 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 199 LNPKYTFDTFVIGASNRFAHAAAFAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 253 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQ 272 + + P +RV Y+++E F+ F + I + N + R +D+L+IDD+QFLQ Sbjct: 254 YYATQLFPEIRVKYVSSEEFVNDFINTIGSSKTSNSLRPAFQRRYREVDILMIDDIQFLQ 313 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK EF H N+L + KQVV +D+PP L+ + R+RSR + G+ + D E Sbjct: 314 GKDATVEEFFHTFNALHNEVKQVVITSDQPPKMLKGFEERLRSRFEWGLLTDVQPPDMET 373 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 RF+IL+ + A Q L++ +VL ++A ++++ REL+GA L+ +FA + Sbjct: 374 RFAILRRKAAGEQ-----LDVPNDVLEYIASRISSNIRELEGA---LIRVTAFANLNDQQ 425 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L + +T + DI A +++++ +DL R RT+ RQ+AMY Sbjct: 426 VDVSLAETVLKDFITQDDTPAITAADIMGQTAAYFSLTLDDLCGTSRSRTLTTARQIAMY 485 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE-KMLETDITLKKEVELLKRL 499 L + +T S P+IG+ FG RDHTTV+HA +K+ +M E + EL R+ Sbjct: 486 LCRELTELSLPKIGQAFGGRDHTTVMHANKKIRTQMAERRAVYTQVTELTNRI 538 >gi|14195657|sp|P46388|DNAA_MYCLE RecName: Full=Chromosomal replication initiator protein DnaA Length = 502 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 142/447 (31%), Positives = 244/447 (54%), Gaps = 41/447 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W ++ +++ LSVP++F++ I+ IT Q +++ VR +A Sbjct: 46 AWLNLVQPLTIIEGFALLSVPSSFVQNEIERHLRTPITDALSRRLG--QQIQLGVR-IAP 102 Query: 117 PS---VEKTASSPSITKLSPINTNISKS---PIILGKQTISPVF-------------GSP 157 PS ++ +SS + T+ ++ P+ Q + F G+ Sbjct: 103 PSTDHIDDNSSSADVLLTDDCGTDTDENYGEPLTGEYQGLPTYFTERPHHTESTVTGGTS 162 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL A Sbjct: 163 LNRRYTFETFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAG 217 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++GK I Sbjct: 218 NYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGI 277 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 278 QEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAIL 337 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +Q E +L + +VL +A ++ + REL+GA L+ +FA + + + Sbjct: 338 RKK---AQME--RLAVPGDVLELIASSIERNIRELEGA---LIRVTAFASLNKTAIDKAL 389 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL + + Sbjct: 390 AEIVLRDLIADASTMQISAATIMTATAEYFDTTIEELRGPGKTRALAQSRQIAMYLCREL 449 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T S P+IG+ FG RDHTTV++A RK+ Sbjct: 450 TDLSLPKIGQAFG-RDHTTVMYAQRKI 475 >gi|296127870|ref|YP_003635120.1| chromosomal replication initiator protein DnaA [Cellulomonas flavigena DSM 20109] gi|296019685|gb|ADG72921.1| chromosomal replication initiator protein DnaA [Cellulomonas flavigena DSM 20109] Length = 534 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/345 (36%), Positives = 203/345 (58%), Gaps = 13/345 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 194 LNPKYRFETFVIGSSNRFAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 248 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P +RV Y+ +E F F ++I + A + R +D+LLIDD+QFLQGK Sbjct: 249 HYAQNLYPTVRVRYVNSEEFTNDFINSIGEGKAGAFQRRYREVDVLLIDDIQFLQGKEQT 308 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N+L +++KQVV +D PP +L + R+RSR + G+ + D E R +IL Sbjct: 309 MEEFFHTFNTLHNASKQVVITSDVPPKQLNGFEDRMRSRFEWGLITDVQPPDLETRIAIL 368 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 + + A + + P ++VL ++A ++T+ REL+GA ++ F + ++ +A+ Sbjct: 369 RKKAASERLQAP-----DDVLEYIASRISTNIRELEGALIRVTAFANLNRQLVDVSLAEI 423 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L L++ +T+++ + A ++ +S DL + R R +V RQ+AMYL + +T Sbjct: 424 VLKDLISDDQTQEITATTVIGQTAAYFGLSIEDLCGSSRSRVLVTARQIAMYLCRELTDL 483 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 S P+IG+ FG RDHTTV+HA RK+ +++ ++ +V EL R+ Sbjct: 484 SLPKIGQAFGGRDHTTVMHANRKIRELMAERRSIYNQVTELTNRI 528 >gi|15826866|ref|NP_301129.1| chromosomal replication initiation protein [Mycobacterium leprae TN] gi|13092413|emb|CAC29509.1| putative chromosomal replication initiator protein [Mycobacterium leprae] Length = 521 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 142/447 (31%), Positives = 244/447 (54%), Gaps = 41/447 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W ++ +++ LSVP++F++ I+ IT Q +++ VR +A Sbjct: 65 AWLNLVQPLTIIEGFALLSVPSSFVQNEIERHLRTPITDALSRRLG--QQIQLGVR-IAP 121 Query: 117 PS---VEKTASSPSITKLSPINTNISKS---PIILGKQTISPVF-------------GSP 157 PS ++ +SS + T+ ++ P+ Q + F G+ Sbjct: 122 PSTDHIDDNSSSADVLLTDDCGTDTDENYGEPLTGEYQGLPTYFTERPHHTESTVTGGTS 181 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL A Sbjct: 182 LNRRYTFETFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++GK I Sbjct: 237 NYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGI 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 297 QEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +Q E +L + +VL +A ++ + REL+GA L+ +FA + + + Sbjct: 357 RKK---AQME--RLAVPGDVLELIASSIERNIRELEGA---LIRVTAFASLNKTAIDKAL 408 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL + + Sbjct: 409 AEIVLRDLIADASTMQISAATIMTATAEYFDTTIEELRGPGKTRALAQSRQIAMYLCREL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T S P+IG+ FG RDHTTV++A RK+ Sbjct: 469 TDLSLPKIGQAFG-RDHTTVMYAQRKI 494 >gi|33863457|ref|NP_895017.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9313] gi|61212718|sp|Q7V6H4|DNAA_PROMM RecName: Full=Chromosomal replication initiator protein DnaA gi|33640906|emb|CAE21362.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9313] Length = 465 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 140/478 (29%), Positives = 247/478 (51%), Gaps = 33/478 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ V L++ + + +W + + L P +F W++ Y++T Sbjct: 3 ITGNELWSKVQQALQHNLSKPTFETWIRPAICSGFRDGELTLIAPNSFASNWLRKNYVQT 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + ++I G + V SV+ + L P+ + SP+ + T + Sbjct: 63 I----EAAAAKIYGQSVRV------SVQAQEEDSAERVLPPMTSASIPSPLPTAETTTAS 112 Query: 153 VFGSP--------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 V S L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI Sbjct: 113 VAPSSGPRRILPGLNLRYVFNRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGG 167 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QAI + ++ P +V Y++ E F AIR + +D R DL+L Sbjct: 168 VGLGKTHLMQAIGHYRLEINPEAKVAYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLIL 227 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ Sbjct: 228 VDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPKLQERLISRFSMGLIAD 287 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R +IL+ + E ++ + +++ ++A T++ REL+GA + V + Sbjct: 288 IQSPDLETRMAILQKK-----AEQERMMLPRDLIQYIAGRFTSNIRELEGALTRAV---A 339 Query: 384 FAPILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 FA I + E ++ +++ G+ + + + V++ ++++ D+ S+ R R V R Sbjct: 340 FASITGLPMTVESVAPMLDPNGQGVDVTPQQVIDKVSEVFDVTPQDMRSSSRRRAVSHAR 399 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 QV MYL + T S P IG FG +DHTTV++A+ +VEK L +D L +V ++ L+ Sbjct: 400 QVGMYLMRQGTDLSLPRIGETFGGKDHTTVMYAIEQVEKRLSSDPQLASQVRRVRDLL 457 >gi|224027038|ref|ZP_03645404.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM 18228] gi|224020274|gb|EEF78272.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM 18228] Length = 469 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 138/452 (30%), Positives = 238/452 (52%), Gaps = 30/452 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +WF+ + + + + VP+ F +++ +Y+ + +E +G E++ + Sbjct: 28 FETWFEPIVPLKYENKALTIGVPSPFFYEYLEEKYVGLLRAAIYKEIG--EGTELMYSIL 85 Query: 115 A------LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-LDSRFVFSTF 167 ++E T S ++ +P++ N +K+P L Q +P P L+ + F F Sbjct: 86 TDKTNHITVNMEGTKRSSALPPQAPVH-NANKAPNPL--QAAAPQDLDPHLNPNYNFENF 142 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 I+G+SN + T A+++A+ + + NPLF++ G+GKTHL+ AI + P Sbjct: 143 IKGTSNEFSRTVAETVAQNPARTF-----NPLFLYGPSGVGKTHLINAIGTRIKELYPEK 197 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNS 286 RV+Y++A F ++ ++R N + + ID+L+IDD+Q G Q+ F H+ N Sbjct: 198 RVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNH 257 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 L + KQ++ +DR P L+ ++ R+ +R + G+ L D E+R +IL+N++ + Sbjct: 258 LHQNGKQLILTSDRAPVMLQGMEDRLLTRFKWGLVAELEKPDIELRKNILRNKI----RR 313 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVN 402 D L I E V+ ++A V S REL+G N L+ + + +L EI A ++ V Sbjct: 314 D-GLTIPESVICYIAENVNESVRELEGIVNSLLAQ---SILLKREINLDLAQRIVRKAVR 369 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 E K + I+DI V HY I + + + R R VV+ RQVAMYL+K T S +IG+ Sbjct: 370 CAEVKAVTIDDIIEKVCAHYKIDTSAIHTKTRKREVVQVRQVAMYLAKKHTETSSSKIGQ 429 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 G++DH TVLHA + V+ LE D K E+E Sbjct: 430 LIGNKDHATVLHACKTVKDQLEVDKEFKAEIE 461 >gi|221229344|ref|YP_002502760.1| chromosomal replication initiation protein [Mycobacterium leprae Br4923] gi|219932451|emb|CAR70094.1| putative chromosomal replication initiator protein [Mycobacterium leprae Br4923] Length = 521 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 142/447 (31%), Positives = 244/447 (54%), Gaps = 41/447 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 +W ++ +++ LSVP++F++ I+ IT Q +++ VR +A Sbjct: 65 AWLNLVQPLTIIEGFALLSVPSSFVQNEIERHLRTPITDALSRRLG--QQIQLGVR-IAP 121 Query: 117 PS---VEKTASSPSITKLSPINTNISKS---PIILGKQTISPVF-------------GSP 157 PS ++ +SS + T+ ++ P+ Q + F G+ Sbjct: 122 PSTDHIDDNSSSADVLLTDDCGTDTDENYGEPLTGEYQGLPTYFTERPHHTESTVTGGTS 181 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL A Sbjct: 182 LNRRYTFETFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAG 236 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++GK I Sbjct: 237 NYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGI 296 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 297 QEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAIL 356 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +Q E +L + +VL +A ++ + REL+GA L+ +FA + + + Sbjct: 357 RKK---AQME--RLAVPGDVLELIASSIERNIRELEGA---LIRVTAFASLNKTAIDKAL 408 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL + + Sbjct: 409 AEIVLRDLIADASTMQISAATIMTATAEYFDTTIEELRGPGKTRALAQSRQIAMYLCREL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKV 479 T S P+IG+ FG RDHTTV++A RK+ Sbjct: 469 TDLSLPKIGQAFG-RDHTTVMYAQRKI 494 >gi|189462574|ref|ZP_03011359.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136] gi|189430735|gb|EDU99719.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136] Length = 469 Score = 201 bits (511), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/476 (28%), Positives = 243/476 (51%), Gaps = 36/476 (7%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 KRCL +K+ V Y +WF+ + + + VP+ F +++ Sbjct: 12 KRCLNF------------IKDNVNATAYKTWFEPVVPLKYEDKALTIGVPSPFFYEYLEE 59 Query: 88 RYLETITKLFQEEHSRIQGVEIL-------VRSVALPSVEKTASSPSITKLSPINTNISK 140 +Y+ + +E +G E++ +A+ ++ T S ++ +PI+ N +K Sbjct: 60 KYVGLLRAAIYKEIG--EGTELMYSILTDKTNHIAI-DMKGTERSSALPPQAPIH-NGNK 115 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +P +L + + L+ + F FI+G+SN + T A+++A+ + + NPLF Sbjct: 116 APSLLQAPAVQDL-DPHLNPNYNFENFIKGTSNEFSRTVAETVAQNPARTF-----NPLF 169 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ G+GKTHL+ AI + P RV+Y++A F ++ ++R N + + I Sbjct: 170 LYGPSGVGKTHLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTI 229 Query: 261 DLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G Sbjct: 230 DVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEDRLLTRFKWG 289 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL- 378 + L D E+R +IL+N++ + D L I E V+ ++A V S REL+G N L Sbjct: 290 LVAELEKPDIELRKNILRNKI----RRD-GLVIPESVICYIAENVNESVRELEGIVNSLL 344 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 V+ + ++A ++ V E K + +++I V HY + + + + R R V Sbjct: 345 VYSIQLKREINLDLAQRIVRKAVRCAEVKPLTVDNIIEKVCSHYKVDASTIHTKTRKREV 404 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 V+ RQVAMYL+K T S +IG+ G++DH TVLHA + V+ +E D K E+E Sbjct: 405 VQVRQVAMYLAKKHTDTSSSKIGQLIGNKDHATVLHACKIVKDQVEVDKAFKAEIE 460 >gi|116668569|ref|YP_829502.1| chromosomal replication initiator protein DnaA [Arthrobacter sp. FB24] gi|116608678|gb|ABK01402.1| chromosomal replication initiator protein DnaA [Arthrobacter sp. FB24] Length = 474 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 220/389 (56%), Gaps = 30/389 (7%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 P+VE + ++ +L P P++ + S FG L+ ++VF TF+ GSSNR A Sbjct: 103 PAVELSLATDPTVELKP-------QPML---PSTSHEFGR-LNPKYVFDTFVIGSSNRFA 151 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA ++AE + Y NPLFI+ GLGKTHLL AI + + + +RV Y+ +E Sbjct: 152 HAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIGHYARRLYSGIRVRYVNSEE 206 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F F ++IRD+ + K + RN+D+LLIDD+QFL GK EF H N+L ++ KQVV Sbjct: 207 FTNDFINSIRDDEGTSFKTTYRNVDVLLIDDIQFLAGKDRTLEEFFHTFNALHNNNKQVV 266 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +D+PP L + R++SR + G+ + + E R +IL+ + A+S+ L+ ++ Sbjct: 267 ITSDQPPKLLAGFEDRMKSRFEWGLLTDIQPPELETRIAILRKK-ALSEG----LSAPDD 321 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRI 411 L ++A ++++ REL+GA L+ +FA + + +A+ +L L+ +++ Sbjct: 322 ALEYIASKISSNIRELEGA---LIRVTAFASLNRQPVDVALAEMVLKDLITDDGAQEITS 378 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 I A ++ +S +L S R RT+V RQ+AMYL + +T S P+IG+ G RDHTT Sbjct: 379 AQILTQTADYFKLSMEELCSKSRTRTLVTARQIAMYLCRELTDMSLPKIGQELGGRDHTT 438 Query: 472 VLHAVRKV-EKMLETDITLKKEVELLKRL 499 V+HA RK+ E M E + + EL R+ Sbjct: 439 VIHADRKIRELMAERRVIYNQVTELTNRI 467 >gi|157414323|ref|YP_001481579.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81116] gi|172046981|sp|A8FJG5|DNAA_CAMJ8 RecName: Full=Chromosomal replication initiator protein DnaA gi|157385287|gb|ABV51602.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 81116] Length = 440 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/462 (27%), Positives = 238/462 (51%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ + + + P L +I+ +Y + I+ ++ + Sbjct: 10 LKKELSENEYENYIAILKFNEKQSKADFLVFNAPNELLAKFIQTKYGKKISHFYEVQSGN 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 V I +S S I S I L+ F Sbjct: 70 KASVLIQAQSAKQSSKSTKIDIAHIKAQSTI-----------------------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I++ D G NP+FI+ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAISQKDKLGKL---YNPIFIYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|269954811|ref|YP_003324600.1| chromosomal replication initiator protein DnaA [Xylanimonas cellulosilytica DSM 15894] gi|269303492|gb|ACZ29042.1| chromosomal replication initiator protein DnaA [Xylanimonas cellulosilytica DSM 15894] Length = 468 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 146/451 (32%), Positives = 241/451 (53%), Gaps = 28/451 (6%) Query: 59 FQRL-KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 F RL K +VL+ V ++VP + +++ + + S + G ++ P Sbjct: 30 FVRLAKPMAVLNGTVFIAVPHEQTRTYLETSVRDQLISAL----SSVLGFDVRFGITVDP 85 Query: 118 SVE-KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP--LDSRFVFSTFIEGSSNR 174 + ++ + P+ + P + +P Q + P P L+ R+VF TF+ G+SNR Sbjct: 86 EISAESLTGPTQDYVEPEEEDDVDAPAPPLPQPVRPA-AEPTRLNPRYVFETFVIGASNR 144 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A AA ++AE + Y NPLFI+ GLGKTHLL AI + + P++RV Y+ + Sbjct: 145 FAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIGHYAHNLYPHVRVRYVNS 199 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F F ++I D + R++D+LLIDD+QFLQGK EF H N+L ++ KQ Sbjct: 200 EEFTNDFINSIGDKKQGAFQRRYRDVDVLLIDDIQFLQGKEQTMEEFFHTFNALHNANKQ 259 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 VV +D PP +L + R+RSR + G+ + D E R +IL+ + A KL++ Sbjct: 260 VVITSDVPPKQLNGFEDRLRSRFEWGLITDVQPPDLETRIAILRKKAASD-----KLDVP 314 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKM 409 ++VL ++ ++T+ REL+GA L+ +FA + + +A+ +L L+ + ++ Sbjct: 315 QDVLSYIGSRISTNIRELEGA---LIRVTAFANLNRQQVDLPLAEIVLRDLIIDDDPAEV 371 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 + A ++ +S DL + R R +V RQ+AMYL + +T S P+IG++FG RDH Sbjct: 372 TPAVVIAQTAAYFGLSIEDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFGGRDH 431 Query: 470 TTVLHAVRKVE-KMLETDITLKKEVELLKRL 499 TTV+HA +K+ +M E T + EL R+ Sbjct: 432 TTVMHANKKIAGQMAERRSTYNQVTELTSRI 462 >gi|313886600|ref|ZP_07820313.1| chromosomal replication initiator protein DnaA [Porphyromonas asaccharolytica PR426713P-I] gi|312923956|gb|EFR34752.1| chromosomal replication initiator protein DnaA [Porphyromonas asaccharolytica PR426713P-I] Length = 475 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 135/472 (28%), Positives = 238/472 (50%), Gaps = 32/472 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ + P+VY +WF +K S++ + L VP+ F +I+ ++ + ++ Q RI Sbjct: 18 LQAMIQPEVYNAWFPHIKPVSLIGVEMTLGVPSQFFCEYIETHFINELKQVLQ----RIV 73 Query: 106 GVEILVR---------------SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 G ++++ SV LP+ +++ IN N + + + + + Sbjct: 74 GPNVVLKYKALVDSAASHRKNSSVTLPTQSYASNAYGAAGAYTINANGAAAALKTEPRQL 133 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P F S L + F T+ +G SNR A + A+SIAE G LNP FI+ G+GKT Sbjct: 134 -PDFDSQLKPQLSFDTYYQGESNRTASSIARSIAEKPGQG----ALNPCFIYGPSGVGKT 188 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ- 269 HL AI + P L+V+Y+++ F ++ +A R N + + + +D+LLIDD+Q Sbjct: 189 HLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVLLIDDIQG 248 Query: 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q F + N L KQ+V +D P L L+ R+ SR+ G +++ + DY Sbjct: 249 LIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTIEVERPDY 308 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 ++R L+++ E+ + +E++ ++ARTVT+S R L G F L+ R + + Sbjct: 309 DLRREYLRHK-----SEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLITRAAVEGCDV 363 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T+ +++S V E K++ + I++ V ++Y++ + S R V + RQ+ MY Sbjct: 364 TSSFVKKIVSQTVKQ-EKKEITVSMIEKTVCEYYHVPIELVRSRSRKADVAQARQMIMYF 422 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K T +S IG G R H TVLH+ + VE E + ++ ++ LI Sbjct: 423 AKRYTDQSLSAIGELLGGRSHATVLHSCKVVEDQAEVSTAYRSDLNAIESLI 474 >gi|284925304|gb|ADC27656.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni IA3902] Length = 440 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/462 (27%), Positives = 246/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELNENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSAKQSNKSTKI--------DIAH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++IA D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAIAHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|262281645|ref|ZP_06059414.1| chromosomal replication initiator protein DnaA [Streptococcus sp. 2_1_36FAA] gi|262262099|gb|EEY80796.1| chromosomal replication initiator protein DnaA [Streptococcus sp. 2_1_36FAA] Length = 450 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 205/366 (56%), Gaps = 15/366 (4%) Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 S+ P + K+ SP + L +++ F F++G N+ A AA ++A+ Y NP Sbjct: 95 SQQPDLTEKKK-SPPLATGLKAKYTFENFVQGDGNQWAKAAALAVADNLGGIY-----NP 148 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFI+ GLGKTHLL AI N ++ P+ R+ Y+ AE F+ F +R + K R Sbjct: 149 LFIYGGPGLGKTHLLNAIGNEVLENTPDARIKYVPAETFINDFLEHLRLGEMDSFKKIYR 208 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ++DLLLIDD+Q L K+ Q EF + N+L KQ+V +DR P LE+L+ R+ +R + Sbjct: 209 SLDLLLIDDIQALSKKVSTQEEFFNTFNALHGENKQIVLTSDRSPDYLENLEERLVTRFK 268 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G++ + ++E R +IL+N++ E+ L E + ++A ++ R+L+GA Sbjct: 269 WGLTSDITPPNFETRIAILRNKI-----EEFDLIFPNETIEYLAGQFDSNVRDLEGALKD 323 Query: 378 LVFRHSFAPI--LTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 + S I +T +IA E + G + + I+ IQ V Y +S ++ RR Sbjct: 324 INLLASMKQIKEITIDIAAEAIRSRKQAGSQLLVIPIDRIQTEVGNFYGVSVKEMKGTRR 383 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 V+ +V RQVAMYL++ +T S P+IGR FG +DHTTV+HA K++ MLE D L+ E+E Sbjct: 384 VQNIVLARQVAMYLTRELTDNSLPKIGREFGGKDHTTVIHAHGKIKSMLEEDDNLRLEIE 443 Query: 495 LLKRLI 500 +K I Sbjct: 444 SIKNKI 449 >gi|291455692|ref|ZP_06595082.1| putative replication initiator protein [Bifidobacterium breve DSM 20213] gi|291382620|gb|EFE90138.1| putative replication initiator protein [Bifidobacterium breve DSM 20213] Length = 488 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 149/466 (31%), Positives = 229/466 (49%), Gaps = 40/466 (8%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 W + + V + + L V N I+ E+ L Q H+ G + + Sbjct: 35 GWLEGIVPEGVFGSTIVLCVDNNDTLQAIQGNLNES---LLQALHTAT-GENMFPAFKVV 90 Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV---FGSP-----------LDSRF 162 P E SP T SP T+ K P + I V F P L+ F Sbjct: 91 PRSEPQPVSPYPTNASPTLTDFGKEPYGAPEPVIPAVEQQFSVPQQKMNRDPETHLNKSF 150 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F +F+ G SNR A T A ++AE + NPL I+ GLGKTHLL AI N ++ Sbjct: 151 TFDSFVPGDSNRFARTVALAVAEGSGQDF-----NPLCIYGGSGLGKTHLLNAIGNYALV 205 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCA-----LNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + P L+V Y+T+E F F A+++ R +D+LLIDD+QFL GK Sbjct: 206 KDPGLKVRYVTSEEFTNDFIDALQNTNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEAT 265 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 +F H NSL + K++V A+D P L+ + R+ SR + G++V + D E R +IL Sbjct: 266 LDQFFHTFNSLHQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAIL 325 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + A++ + P +VL +A T + REL+GA ++ S + P+ T +A+ Sbjct: 326 RMIAAMNGSKIPN-----DVLDLIAERFTENIRELEGALTRVTAVASLSNQPV-TRALAE 379 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L T +++ DI VAK+++++ D++ + R + VV PRQ+AMYL++ MT Sbjct: 380 QTLQDFFTT--DVEIKPTDIIGQVAKYFHLTFEDIVGSSRTKNVVIPRQIAMYLAREMTS 437 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 S +IG FG RDHTTV+HA ++ +KM + +EL RL Sbjct: 438 MSLMDIGEVFGGRDHTTVMHACTRIGDKMQQKQEIYNYVMELTVRL 483 >gi|163838770|ref|YP_001623175.1| chromosomal replication initiator protein [Renibacterium salmoninarum ATCC 33209] gi|162952246|gb|ABY21761.1| chromosomal replication initiator protein [Renibacterium salmoninarum ATCC 33209] Length = 467 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 130/362 (35%), Positives = 208/362 (57%), Gaps = 19/362 (5%) Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 G + S FG L+ +++F TF+ G SNR A AA ++AE + Y NPLFI+ Sbjct: 115 GPPSTSNEFGR-LNPKYLFDTFVIGQSNRFAHAAAVAVAEAPAKAY-----NPLFIYGDS 168 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL AI + + + +RV Y+ +E F F ++IR + + K + RN+D+LLI Sbjct: 169 GLGKTHLLHAIGHYARRLYNGIRVRYVNSEEFTNEFINSIRYDEGTSFKTTYRNVDILLI 228 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL GK Q EF H N+L + KQVV +D PP +L + R+RSR + G+ + Sbjct: 229 DDIQFLSGKEATQEEFFHTFNALHNHNKQVVITSDLPPKQLSGFEERMRSRFEWGLLTDV 288 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL+ + AI + L+ ++VL ++A ++T+ REL+GA L+ +F Sbjct: 289 QPPELETRIAILRKK-AIGEG----LHAPDDVLEYIASKISTNIRELEGA---LIRVTAF 340 Query: 385 API----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 A + + + + +L L+ +++ I + ++ +S ++L S R RT+V Sbjct: 341 ASLNRQSVDVGLTETVLKDLITDNGDQQITAATILGQTSAYFKLSLDELRSKSRTRTLVN 400 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ T+ +V L LI Sbjct: 401 ARQIAMYLCRELTDLSLPKIGQELGGRDHTTVIHADRKIRELMAERRTIFNQVTELTNLI 460 Query: 501 SE 502 + Sbjct: 461 RQ 462 >gi|332299202|ref|YP_004441123.1| Chromosomal replication initiator protein dnaA [Porphyromonas asaccharolytica DSM 20707] gi|332176265|gb|AEE11955.1| Chromosomal replication initiator protein dnaA [Porphyromonas asaccharolytica DSM 20707] Length = 475 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 135/472 (28%), Positives = 238/472 (50%), Gaps = 32/472 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ + P+VY +WF +K S++ + L VP+ F +I+ ++ + ++ Q RI Sbjct: 18 LQAMIQPEVYNAWFPHIKPVSLIGVEMTLGVPSQFFCEYIETHFINELKQVLQ----RIV 73 Query: 106 GVEILVR---------------SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 G ++++ SV LP+ +++ IN N + + + + + Sbjct: 74 GPNVVLKYKALVDSAASHRKNSSVTLPTQSYASNAYGAAGAYTINANGAAAALKTEPRQL 133 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P F S L + F T+ +G SNR A + A+SIAE G LNP FI+ G+GKT Sbjct: 134 -PDFDSQLKPQLSFDTYYQGESNRTASSIARSIAEKPGQG----ALNPCFIYGPSGVGKT 188 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ- 269 HL AI + P L+V+Y+++ F ++ +A R N + + + +D+LLIDD+Q Sbjct: 189 HLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVLLIDDIQG 248 Query: 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q F + N L KQ+V +D P L L+ R+ SR+ G +++ + DY Sbjct: 249 LIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTIEVERPDY 308 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 ++R L+++ E+ + +E++ ++ARTVT+S R L G F L+ R + + Sbjct: 309 DLRREYLRHK-----SEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLITRAAVEGCDV 363 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T+ +++S V E K++ + I++ V ++Y++ + S R V + RQ+ MY Sbjct: 364 TSSFVKKIVSQTVKQ-EKKEITVSMIEKTVCEYYHVPIELVRSRSRKADVAQARQMIMYF 422 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K T +S IG G R H TVLH+ + VE E + ++ ++ LI Sbjct: 423 AKRYTDQSLSAIGELLGGRSHATVLHSCKVVEDQAEVSTAYRSDLTAIESLI 474 >gi|269217836|ref|ZP_06161690.1| bacterial DnaA protein helix-turn-helix protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212771|gb|EEZ79111.1| bacterial DnaA protein helix-turn-helix protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 591 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 120/348 (34%), Positives = 195/348 (56%), Gaps = 19/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++ R+ F F+ G +NR A A S+A +S G T NPLF+++ G+GKTHL+ AI Sbjct: 248 INPRYTFDNFVIGDNNRFA--TATSLAVAESPGTT---YNPLFLYSDSGMGKTHLMHAIG 302 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N ++ P+++V Y++AE F F +++RD K+ R +D+LLIDD+QF+ G+ Sbjct: 303 NYALNLFPSIKVRYVSAEEFTNAFINSVRDGHQAEFKNQFRTVDILLIDDIQFIGGRDST 362 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF H N+L +S KQ+V +D P+ L + R+ SR GV+ + + E R +IL Sbjct: 363 VEEFFHTFNALTNSNKQIVITSDVSPNLLNGFEERMLSRFNSGVTANIDRPNLETRIAIL 422 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + + EV ++A + T+ RE++GA ++ +FA + ++ + Sbjct: 423 EKK-----AHSDGFTVPREVNEYIATHMLTNVREMEGALRRVT---AFADLSKQTISLGL 474 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ + ++ I A +++IS +++S R R +V RQVAMYL + M Sbjct: 475 AEMILKDLIANPDAIEITATLIMSQTAGYFDISIEEMISTDRSRVLVSARQVAMYLCREM 534 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEK-MLETDITLKKEVELLKRL 499 T S P+IG FG RDHTTV+HA RK++K M E T + EL R+ Sbjct: 535 TELSLPKIGHLFGKRDHTTVMHACRKIDKQMAERQTTYNQVSELTSRI 582 >gi|86150555|ref|ZP_01068779.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839007|gb|EAQ56272.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni CF93-6] Length = 440 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 127/462 (27%), Positives = 246/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSAKQSNKSTKI--------DIAH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++IA D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAIAHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|313611875|gb|EFR86331.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL F2-208] Length = 327 Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 183/334 (54%), Gaps = 29/334 (8%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T P N + + I +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKP--------NPALDEDGIEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + K Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK----AK 289 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 D L+I EV++++A + ++ REL+GA ++V Sbjct: 290 AD-GLDIPNEVMLYIANQIDSNIRELEGALIRVV 322 >gi|320201270|gb|EFW75851.1| Chromosomal replication initiator protein DnaA [Escherichia coli EC4100B] Length = 418 Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 126/420 (30%), Positives = 221/420 (52%), Gaps = 22/420 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 F------QEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNIS-KSPIILGKQ 148 R + G + + ++ A+ + + P S +S Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 >gi|67924996|ref|ZP_00518381.1| chromosomal replication initiator protein, DnaA [Crocosphaera watsonii WH 8501] gi|67853170|gb|EAM48544.1| chromosomal replication initiator protein, DnaA [Crocosphaera watsonii WH 8501] Length = 455 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 143/474 (30%), Positives = 242/474 (51%), Gaps = 39/474 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + I+ V RLK ++ Y +WF +V + + + V F I N Sbjct: 1 MTISPQYIWNQVLERLKIRLNSTAYETWFASATVQTVQDDCLIIQVENTF----IVNHLR 56 Query: 91 ETITKLFQEEHSRIQGVEILVRSVA-----LPSVEKTASSPSITKLSPINTNISKSPIIL 145 +T L EE + G + ++ L ++K ++ ++T + N I SP + Sbjct: 57 KTYYPLIMEEVEGVVGYPVEIKLTTEQEKNLRLIDK--NNENLTHKNATNKLIQDSPKL- 113 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 S L+ + FS F+ G +NR+A A+ +++E + NPLF+ V Sbjct: 114 ----------SQLNPNYNFSRFVVGPTNRMAHAASLAVSESPGREF-----NPLFLCGGV 158 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAIA+ ++ PN V Y++ E F ++IR + ++ R D+LL+ Sbjct: 159 GLGKTHLMQAIAHYRLELYPNANVFYVSTEQFTNDLIASIRQDSMEFFREHYRTADILLV 218 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF++ K Q EF H N+L ++ KQVV A+DRPP + +L R+ SR G+ + Sbjct: 219 DDIQFIEDKEYTQEEFFHTFNTLHEAGKQVVIASDRPPQRIPTLQDRLVSRFSMGLIADI 278 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + D+E R +IL+ + E + + +V+ ++A T++ REL+GA + V S Sbjct: 279 QVPDWETRMAILQKK-----AEYENIRLPRDVIEYIATNYTSNIRELEGALIRTVTYISI 333 Query: 385 A--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + P+ IA L + E + E I +VA+++++S DL S+ R R + R Sbjct: 334 SGLPMNVENIAPVLNPPM----EQITISPEIIITIVAENFHLSVEDLKSSSRRREISLAR 389 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 Q+ MYL + T S P IG FG +DHTTVL++ K+ K+ + D L +++ L Sbjct: 390 QIGMYLMRQHTDLSLPRIGEEFGGKDHTTVLYSCDKISKLQKKDWELSQQLSTL 443 >gi|41406099|ref|NP_958935.1| chromosomal replication initiation protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|13431486|sp|Q9L7L7|DNAA_MYCPA RecName: Full=Chromosomal replication initiator protein DnaA gi|6969271|gb|AAF33692.1| putative dnaA [Mycobacterium avium subsp. paratuberculosis] gi|41394447|gb|AAS02318.1| DnaA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 509 Score = 200 bits (508), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 142/451 (31%), Positives = 241/451 (53%), Gaps = 42/451 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT-----KLFQE------------ 99 +W ++ +++ LSVP++F++ I+ IT +L Q+ Sbjct: 46 AWLNLVRPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPPD 105 Query: 100 --EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--TISPVF- 154 E + I E + A S + A + P+ P ++ I P Sbjct: 106 DVEDAPIPPAEPFPDTDAALSADDGADGEPVENGEPVTDTQPGWPNYFTERPHAIDPAVA 165 Query: 155 -GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL Sbjct: 166 AGTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLL 220 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++G Sbjct: 221 HAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEG 280 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 281 KEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETR 340 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----L 388 +IL+ + +Q E +L + ++VL +A ++ + REL+GA L+ +FA + + Sbjct: 341 IAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGA---LIRVTAFASLNKTPI 392 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 +A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL Sbjct: 393 DKSLAEIVLRDLIADASTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYL 452 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 453 CRELTDLSLPKIGQAFG-RDHTTVMYAQRKI 482 >gi|121612751|ref|YP_999720.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004697|ref|ZP_02270455.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355742|ref|ZP_03222512.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8421] gi|166201874|sp|A1VX79|DNAA_CAMJJ RecName: Full=Chromosomal replication initiator protein DnaA gi|87248987|gb|EAQ71949.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 81-176] gi|205346519|gb|EDZ33152.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 440 Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 245/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELNENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSAKQSNKSTKI--------DIAH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FDSFVVGDSNKYAYGACKAITHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKI 434 >gi|317509427|ref|ZP_07967045.1| chromosomal replication initiator protein DnaA [Segniliparus rugosus ATCC BAA-974] gi|316252256|gb|EFV11708.1| chromosomal replication initiator protein DnaA [Segniliparus rugosus ATCC BAA-974] Length = 500 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 120/331 (36%), Positives = 194/331 (58%), Gaps = 19/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++R+ F TF+ G+SNR A A +++E + Y NPLFI GLGKTHLL A Sbjct: 160 LNARYTFDTFVIGASNRFAHAATFAVSEAPARAY-----NPLFIWGDSGLGKTHLLHAAG 214 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + RV Y++ E F F +++RD+ + K R++DLLL+DD+QF+ GK I Sbjct: 215 HYTQRLFSGFRVKYVSTEEFTNDFINSLRDDRRVAFKQRYRDVDLLLVDDIQFIAGKEGI 274 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S KQ+V +DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 275 QEEFFHTFNTLHNSNKQIVITSDRPPKKLAALEDRLRTRFEWGLITDVQPPELETRIAIL 334 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + I L++ ++V +A + + REL+GA L+ +FA + LTA + Sbjct: 335 RKKANID-----GLDVPDDVAELIASRIERNIRELEGA---LIRVTAFASLNHQKLTAAL 386 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L LV T ++ + I A++++ + +L + R + + RQ+AMYL + + Sbjct: 387 AEMVLRDLVPDSPTLEISVSVILGATAEYFSTTIEELCGPAKTRPLAQARQIAMYLCREL 446 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG+ FG RDHTTV++A +KV K L Sbjct: 447 TDLSLPKIGQAFG-RDHTTVMYAEKKVRKEL 476 >gi|254773054|ref|ZP_05214570.1| chromosomal replication initiation protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 509 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 142/451 (31%), Positives = 241/451 (53%), Gaps = 42/451 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT-----KLFQE------------ 99 +W ++ +++ LSVP++F++ I+ IT +L Q+ Sbjct: 46 AWLNLVRPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPPD 105 Query: 100 --EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--TISPVF- 154 E + I E + A S + A + P+ P ++ I P Sbjct: 106 DVEDALIPPAEPFPDTDAALSADDGADGEPVENGEPVTDTQPGWPNYFTERPHAIDPAVA 165 Query: 155 -GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL Sbjct: 166 AGTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLL 220 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++G Sbjct: 221 HAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEG 280 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 281 KEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETR 340 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----L 388 +IL+ + +Q E +L + ++VL +A ++ + REL+GA L+ +FA + + Sbjct: 341 IAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGA---LIRVTAFASLNKTPI 392 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 +A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL Sbjct: 393 DKSLAEIVLRDLIADASTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYL 452 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 453 CRELTDLSLPKIGQAFG-RDHTTVMYAQRKI 482 >gi|118466558|ref|YP_879304.1| chromosomal replication initiation protein [Mycobacterium avium 104] gi|118167845|gb|ABK68742.1| chromosomal replication initiator protein DnaA [Mycobacterium avium 104] Length = 498 Score = 199 bits (507), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 142/451 (31%), Positives = 241/451 (53%), Gaps = 42/451 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT-----KLFQE------------ 99 +W ++ +++ LSVP++F++ I+ IT +L Q+ Sbjct: 35 AWLNLVRPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPPD 94 Query: 100 --EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--TISPVF- 154 E + I E + A S + A + P+ P ++ I P Sbjct: 95 DVEDALIPPAEPFPDTDAALSADDGADGEPVENGEPVTDTQPGWPNYFTERPHAIDPAVA 154 Query: 155 -GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL Sbjct: 155 AGTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLL 209 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++G Sbjct: 210 HAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEG 269 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 270 KEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETR 329 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----L 388 +IL+ + +Q E +L + ++VL +A ++ + REL+GA L+ +FA + + Sbjct: 330 IAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGA---LIRVTAFASLNKTPI 381 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 +A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL Sbjct: 382 DKSLAEIVLRDLIADASTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYL 441 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 442 CRELTDLSLPKIGQAFG-RDHTTVMYAQRKI 471 >gi|308175815|ref|YP_003915221.1| chromosomal replication initiator protein DnaA [Arthrobacter arilaitensis Re117] gi|307743278|emb|CBT74250.1| chromosomal replication initiator protein DnaA [Arthrobacter arilaitensis Re117] Length = 478 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 130/355 (36%), Positives = 202/355 (56%), Gaps = 20/355 (5%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S FG L+ +++F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKT Sbjct: 131 SQEFGR-LNPKYIFDTFVIGSSNRFAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKT 184 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI + + +RV Y+ +E F F ++IRD+ + K + RN+D+LLIDD+QF Sbjct: 185 HLLHAIGHYARHLYKGIRVRYVNSEEFTNDFINSIRDDEGASFKQTYRNVDILLIDDIQF 244 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L K Q EF H N+L + KQVV +D PP +L+ + R+RSR + G+ + + Sbjct: 245 LANKDATQEEFFHTFNALHNHNKQVVITSDLPPKQLQGFEDRMRSRFEWGLLTDIQPPEL 304 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL+ + P +V+ ++A ++T+ REL+GA L+ +FA + Sbjct: 305 ETRIAILRKKADAENLSAPG-----DVMEYIASRISTNIRELEGA---LIRVTAFASLNN 356 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A+ +L L++ +++ I + A+++ +S ++L S R RT+V RQ+A Sbjct: 357 QPVDLALAETVLKDLISEDGAQEITPSTIIKQTAEYFGLSIDELNSKSRTRTLVTARQIA 416 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 MYL + +T S P+IG G RDHTTV+HA RK+ E M E + EL R+ Sbjct: 417 MYLLRELTDMSLPKIGAELGGRDHTTVIHADRKIRELMAERRAIFNQVTELTNRI 471 >gi|167770836|ref|ZP_02442889.1| hypothetical protein ANACOL_02189 [Anaerotruncus colihominis DSM 17241] gi|167666876|gb|EDS11006.1| hypothetical protein ANACOL_02189 [Anaerotruncus colihominis DSM 17241] Length = 439 Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 232/459 (50%), Gaps = 37/459 (8%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 +F +V KNQ+ + W + + + + L V + F I+ +Y + F Sbjct: 7 LFALVLDLCKNQISDVAFNLWLKDIIPLRLEGSAAFLQVNSEFKMNIIREKYTSILKSAF 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 E + V++++ EK A P S + + G+ Sbjct: 67 --ETTLGFPVDVIITCETPQPAEKPAGPPP-----------SDAAAVNGEYD-------- 105 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 + F TFI GSSN+ A A+ ++A ++ Y NPLFI+ GLGKTHLL AI Sbjct: 106 ----YTFDTFIVGSSNKFAHAASLAVAANPANAY-----NPLFIYGGSGLGKTHLLYAIC 156 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 K +PN ++Y+ + F +AIRD ++ R D+LL+DD+QF+ GK Sbjct: 157 AEIRKNRPNYNIIYVKGDEFANDIITAIRDQRTAEFRERYRKADVLLVDDIQFIGGKEST 216 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S KQ+V A+DRPP E+++L+ R+R+R + G+ + + D+E R +I+ Sbjct: 217 QEEFFHTFNTLYESNKQIVLASDRPPKEIKTLEDRLRTRFEWGLLADIQIPDFETRIAII 276 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADE 395 + + + + P ++V ++A + T+ R+L+G +L ++ + IA Sbjct: 277 RRKAQLLDIQMP-----DDVAEYIANRLKTNIRQLEGTVKKLKAYKLLQGTNPSIMIAQN 331 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 + ++N + + +E I V + Y IS D+ SN+R + RQ+++Y+ + +T Sbjct: 332 AIRDILNDNQPVPVTVERIISEVGRTYGISPQDIRSNKRSAQISAARQISIYIVREITQM 391 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S IG FG RDH+T+++A+++VEK + D+ K+ +E Sbjct: 392 SMSTIGDEFGGRDHSTIVYAIQQVEKNMNNDLRYKETIE 430 >gi|253566260|ref|ZP_04843714.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 3_2_5] gi|251945364|gb|EES85802.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 3_2_5] Length = 476 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 141/494 (28%), Positives = 257/494 (52%), Gaps = 39/494 (7%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTN 79 ++ +V + RCLE+ +++ V Y +WF + + + VP+ Sbjct: 3 ESSHVGLWNRCLEI------------IRDNVPESTYKTWFVPIVPLKYEDKTLIVQVPSQ 50 Query: 80 FLKAWIKNRYLE----TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN 135 F ++++++++ T+ K+ + + V + S A + E T S +I + Sbjct: 51 FFYEFLEDKFVDLLRKTLYKVIGDGTKLMYNVLVDKSSGATVNQESTTRSTAIPQSGLPR 110 Query: 136 TNISKSPIIL---GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 + K+P +L Q + P L+ + F TFIEG SN+++ + A+++AE + Sbjct: 111 VDERKAPGLLRAPAVQDLDP----HLNPNYNFETFIEGYSNKLSRSVAEAVAE---NPAK 163 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 TV NPLF+H + G+GKTHL AI + P+ RV+Y++A F ++ ++R+N + Sbjct: 164 TV-FNPLFLHGASGVGKTHLANAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTND 222 Query: 253 LKDSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + + ID+L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R Sbjct: 223 FINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEER 282 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + +R + G+ L E+R +IL+N++ + P EV+ ++A V S R+L Sbjct: 283 LLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFP-----SEVIDYIAENVNESVRDL 337 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRND 428 +G ++ + + I EI +L +V ETK + I+DI +V KH+++ + Sbjct: 338 EGIVISIM---AHSTIYNKEIDLDLAQRIVRKVVHCETKAVTIDDIINVVCKHFDLESSA 394 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + + R R VV+ RQVAMYL+K T S +IG+ G++DH TVLHA + V+ E D Sbjct: 395 IHTKSRKREVVQARQVAMYLAKTHTDFSTSKIGKFIGNKDHATVLHACKTVKGQCEVDKG 454 Query: 489 LKKEVELLKRLISE 502 + ++E ++ L+ + Sbjct: 455 FRSDLENIETLLKK 468 >gi|223983629|ref|ZP_03633807.1| hypothetical protein HOLDEFILI_01088 [Holdemania filiformis DSM 12042] gi|223964396|gb|EEF68730.1| hypothetical protein HOLDEFILI_01088 [Holdemania filiformis DSM 12042] Length = 458 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 201/365 (55%), Gaps = 17/365 (4%) Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 K+P I G T + L + F F+ G SNR + +AA + A + NPL Sbjct: 104 KAPAITGLNT------TNLIQDYTFDNFVVGGSNRESHSAALACAYNPGQFF-----NPL 152 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI+ + GLGKTHLL AI N + P+ +V Y T+E F+ ++I++ K+ + + Sbjct: 153 FIYGNSGLGKTHLLNAIGNYVSEHAPDKKVYYTTSEDFVNAVVNSIKNGQIQEFKEEMND 212 Query: 260 IDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D+LL+DD+QFL GK HE F ++ N L+++ KQ+ +DR P+E++ L+ R+ SR Sbjct: 213 LDVLLVDDIQFLAGKEKSHETFFYIFNELVNNKKQICLTSDRHPTEIKGLEERLISRFSS 272 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+SV + ++E +ILK +L Q DP + I+++VL ++A + R+L+GA N+L Sbjct: 273 GLSVGVDSPEFETSVAILKVKLE-KQSVDPSI-IDDDVLAYIASNFSQDVRKLEGALNRL 330 Query: 379 VF---RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 +F S + + + A T + + I R VA +Y +++ L+S R Sbjct: 331 LFYSINFSNSTRIDFKTAVSAFRGQAQTIDKNDLTASKIIRCVADYYGLTKLQLVSKTRT 390 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 + + R +AMYL + + +IG FG RDH+TV+ A KVEK L+ D T ++ V Sbjct: 391 KNIATARHMAMYLCRKHLDMPYVKIGDEFGKRDHSTVMSACEKVEKGLKNDETYRQAVGE 450 Query: 496 LKRLI 500 L++L+ Sbjct: 451 LEKLM 455 >gi|86738725|ref|YP_479125.1| chromosomal replication initiator protein DnaA [Frankia sp. CcI3] gi|86565587|gb|ABD09396.1| chromosomal replication initiator protein DnaA [Frankia sp. CcI3] Length = 562 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 197/348 (56%), Gaps = 19/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R++F TF+ G SNR AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 221 LNPRYIFETFVIGDSNRFPHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 275 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++K PN+RV Y+++E F F ++IRD+ + R+ID+LL+DD+QFL+ K Sbjct: 276 HYALKLYPNMRVKYVSSEEFTNDFINSIRDDRQQAFQRRYRDIDVLLVDDIQFLENKERT 335 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L D KQ+V ++DR P +L +L+ R+RSR + G+ + D E R +IL Sbjct: 336 QEEFFHTFNVLHDGEKQIVISSDRSPKQLSALEDRLRSRFEWGLMTDITPPDLETRIAIL 395 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + A +L + +VL ++A + + REL+GA L+ +FA + + + Sbjct: 396 SKKAATE-----RLPVPPDVLEYIATHIERNIRELEGA---LIRVAAFASLNKSHVDRTL 447 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ + I A ++ +S DL R R +V RQ+AMYL + + Sbjct: 448 AEIVLRDLIPDAGNPDITAAAIMNATAAYFGVSMEDLCGTSRSRVLVTARQIAMYLCREL 507 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 T S P+IG+ FG RDHTTV+HA RK+ ++ + +V EL R+ Sbjct: 508 TDLSLPKIGQHFGGRDHTTVMHADRKIRGLMAERRAIYNQVTELTNRI 555 >gi|53715109|ref|YP_101101.1| chromosomal replication initiation protein [Bacteroides fragilis YCH46] gi|60683067|ref|YP_213211.1| chromosomal replication initiation protein [Bacteroides fragilis NCTC 9343] gi|265766960|ref|ZP_06094789.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_16] gi|61212532|sp|Q64PL4|DNAA_BACFR RecName: Full=Chromosomal replication initiator protein DnaA gi|81313879|sp|Q5L9D0|DNAA_BACFN RecName: Full=Chromosomal replication initiator protein DnaA gi|52217974|dbj|BAD50567.1| chromosomal replication initiator protein DnaA [Bacteroides fragilis YCH46] gi|60494501|emb|CAH09298.1| putative chromosomal replication initiator protein [Bacteroides fragilis NCTC 9343] gi|263253337|gb|EEZ24813.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_16] gi|301164582|emb|CBW24141.1| putative chromosomal replication initiator protein [Bacteroides fragilis 638R] Length = 476 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 141/494 (28%), Positives = 257/494 (52%), Gaps = 39/494 (7%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTN 79 ++ +V + RCLE+ +++ V Y +WF + + + VP+ Sbjct: 3 ESSHVGLWNRCLEI------------IRDNVPESTYKTWFVPIVPLKYEDKTLIVQVPSQ 50 Query: 80 FLKAWIKNRYLE----TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN 135 F ++++++++ T+ K+ + + V + S A + E T S +I + Sbjct: 51 FFYEFLEDKFVDLLRKTLYKVIGDGTKLMYNVLVDKSSGATVNQESTTRSTAIPQSGLPR 110 Query: 136 TNISKSPIIL---GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 + K+P +L Q + P L+ + F TFIEG SN+++ + A+++AE + Sbjct: 111 VDERKAPGLLRAPAVQDLDP----HLNPNYNFETFIEGYSNKLSRSVAEAVAE---NPAK 163 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 TV NPLF+H + G+GKTHL AI + P+ RV+Y++A F ++ ++R+N + Sbjct: 164 TV-FNPLFLHGASGVGKTHLANAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTND 222 Query: 253 LKDSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + + ID+L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R Sbjct: 223 FINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEER 282 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + +R + G+ L E+R +IL+N++ + P EV+ ++A V S R+L Sbjct: 283 LLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFP-----SEVIDYIAENVNESVRDL 337 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRND 428 +G ++ + + I EI +L +V ETK + I+DI +V KH+++ + Sbjct: 338 EGIVISIM---AHSTIYNKEIDLDLAQRIVRKVVRCETKAVTIDDIINVVCKHFDLESSA 394 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + + R R VV+ RQVAMYL+K T S +IG+ G++DH TVLHA + V+ E D Sbjct: 395 IHTKSRKREVVQARQVAMYLAKTHTDFSTSKIGKFIGNKDHATVLHACKTVKGQCEVDKG 454 Query: 489 LKKEVELLKRLISE 502 + ++E ++ L+ + Sbjct: 455 FRSDLENIETLLKK 468 >gi|315057442|gb|ADT71771.1| Chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni S3] Length = 440 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 245/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSAKQSNKSTKI--------DIAH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FDSFVVGDSNKYAYGACKAITHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDSSLKAKIEELKNKI 434 >gi|296392441|ref|YP_003657325.1| chromosomal replication initiator protein DnaA [Segniliparus rotundus DSM 44985] gi|296179588|gb|ADG96494.1| chromosomal replication initiator protein DnaA [Segniliparus rotundus DSM 44985] Length = 487 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 122/345 (35%), Positives = 199/345 (57%), Gaps = 21/345 (6%) Query: 146 GKQTISPVFGS--PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 GK ++P + L++R+ F TF+ G+SNR A A +++E + Y NPLFI Sbjct: 133 GKTALAPTTDTTTSLNARYTFETFVIGASNRFAHAATFAVSEAPARAY-----NPLFIWG 187 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 GLGKTHLL A + + + RV Y++ E F F +++RD+ + K R++DLL Sbjct: 188 DSGLGKTHLLHAAGHYTQRLFSGFRVKYVSTEEFTNDFINSLRDDRRVAFKQRYRDVDLL 247 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+QF+ GK IQ EF H N+L +S KQ++ +DRPP +L +L+ R+R+R + G+ Sbjct: 248 LVDDIQFIAGKEGIQEEFFHTFNTLHNSNKQIIITSDRPPKKLAALEDRLRTRFEWGLIT 307 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + + E R +IL+ + I E P ++ E + + R + REL+GA L+ Sbjct: 308 DVQPPELETRIAILRKKANIDGLEVPD-DVAELIASRIERNI----RELEGA---LIRVT 359 Query: 383 SFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +FA + LT+ +A+ +L LV T ++ + I A++++ + +L + R + Sbjct: 360 AFASLNHQKLTSALAEMVLRDLVPDSPTLEISVSVILGATAEYFSTTIEELCGPVKTRPL 419 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + RQ+AMYL + +T S P+IG+ FG RDHTTV++A +KV K L Sbjct: 420 AQARQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYADKKVRKEL 463 >gi|119953225|ref|YP_945434.1| chromosomal replication initiator protein DnaA [Borrelia turicatae 91E135] gi|254777889|sp|A1QZM2|DNAA_BORT9 RecName: Full=Chromosomal replication initiator protein DnaA gi|119861996|gb|AAX17764.1| chromosomal replication initiator protein DnaA [Borrelia turicatae 91E135] Length = 484 Score = 199 bits (506), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 131/480 (27%), Positives = 247/480 (51%), Gaps = 40/480 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++I++++ + ++ ++ + + WF+ L F + +S P +F K ++ R+ + I + Sbjct: 5 KNIWSLILAAIRKELSEEEFYIWFENLYFIDATDESIKISAPNSFHKNQVEKRFSKRIKE 64 Query: 96 LFQEEHSRIQGVEIL------------VRSVALPSVEKTASSPSITKLSPINTN----IS 139 + E+ VE + +++ +L + SP K + +NT+ I Sbjct: 65 ILTEKGHNTINVEFINPPKEPKTHSMELKNTSLKDISIQQDSPE--KRTILNTHTKNIIE 122 Query: 140 KSPIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + + K+ I + +P L ++ F FI G +N++A A+ SIA+ Y NP Sbjct: 123 HTKHYVIKEDIHTKYRNPFLKKKYTFENFIIGPNNKLAYNASLSIAKNPGKKY-----NP 177 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 I+ VGLGKTHLLQ+I N + + +++Y+TAE F+ F +I+ N K R Sbjct: 178 CLIYGGVGLGKTHLLQSIGNKTEELHKEFKILYVTAENFLNEFVESIKTNETKRFKKKYR 237 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ++D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR Sbjct: 238 HLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQMVFTCDRQPSELINFTDRLKSRFT 297 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A + Sbjct: 298 RGLNVDISKPNFELRVAIIEKKA-----EEDGIKVPKNILNLVAKKVTTNIRDLEAAVTK 352 Query: 378 LVFRHSFAPI-LTAEIADELLSHLV-------NTGETKKMRIEDIQRMVAKHYNISRNDL 429 L I + I D+++ ++ NT T + IE I++++ + ++ D+ Sbjct: 353 LKAHIDLEDIEIDTSIVDKIIKEIIAYENDKTNTNNT--INIESIKKVILRELKLTNKDI 410 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 N + + + R + YL + T S EIG+ G + H+TVL+++ K++K D+ + Sbjct: 411 EGNSKKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDKERNNDLEI 470 >gi|325297173|ref|YP_004257090.1| Chromosomal replication initiator protein dnaA [Bacteroides salanitronis DSM 18170] gi|324316726|gb|ADY34617.1| Chromosomal replication initiator protein dnaA [Bacteroides salanitronis DSM 18170] Length = 469 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 136/476 (28%), Positives = 248/476 (52%), Gaps = 36/476 (7%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 KRCL + +K+ V + +WF+ + + + VP+ F +++ Sbjct: 12 KRCL------------AFIKDNVNTTAFTTWFEPIVPIKYEGKALTIGVPSPFFYEYLEE 59 Query: 88 RYLETI-TKLFQEEHSRIQGVEILVRSVALPS------VEKTASSPSITKLSPINTNISK 140 +Y++ + T L++E +G E++ V + ++ T S ++ + P+ N +K Sbjct: 60 KYVDLLRTALYKEIG---EGTELMYSIVTDNTNHIDIEMKGTERSVALPEAKPV-YNGNK 115 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +P +L + + L+ + F FI+G+SN +LT A+++A+ + + NPLF Sbjct: 116 APTLLQAPVVQDL-DPHLNPNYNFENFIKGTSNEFSLTVAETVAQNPARTF-----NPLF 169 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ G+GKTHL+ AI + P RV+Y++A F ++ +IR N + + I Sbjct: 170 LYGPSGVGKTHLINAIGTRIKELYPEKRVLYISAHLFQVQYTDSIRTNHFNDFITFYQQI 229 Query: 261 DLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G Sbjct: 230 DVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGIEDRLLTRFKWG 289 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL- 378 + L D ++R +IL++++ + D LNI + V+ ++A V S REL+G N L Sbjct: 290 LIAELERPDIDLRKNILRSKI----RRD-GLNIPDAVINYIAENVNESVRELEGIVNSLL 344 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 V+ + ++A ++ V E K + + DI V HY + + + + R R V Sbjct: 345 VYSIQLKREINLDLAQHIVQKAVRCSEIKPLTVNDIIEKVCSHYQLDVSVIHTKTRKREV 404 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 V+ RQ+AMYL+K T S +IG+ G++DH TVLHA + V+ +E D ++E+E Sbjct: 405 VQVRQIAMYLAKKHTDVSSGKIGQLIGNKDHATVLHACKIVKDQVEVDKAFRQELE 460 >gi|323357956|ref|YP_004224352.1| ATPase [Microbacterium testaceum StLB037] gi|323274327|dbj|BAJ74472.1| ATPase [Microbacterium testaceum StLB037] Length = 471 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 142/434 (32%), Positives = 233/434 (53%), Gaps = 35/434 (8%) Query: 65 HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV---RSVALPS-VE 120 V+ ++L VP + A + R I E +++QG + V R V P ++ Sbjct: 39 QGVMGGTLYLDVPNDLTAAQMNKRMRAPIL----EALTQVQGPDPEVNAFRVVVNPDLID 94 Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-----LDSRFVFSTFIEGSSNRV 175 S+ S + +P T+ S P +Q P+ + L+ ++ F F+ G SNR Sbjct: 95 SPRSASSDDRPAPAPTSHSLIP----EQAPEPIVPASRSDTRLNPKYTFDNFVIGQSNRF 150 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA ++AE + Y NPLFI+ GLGKTHLL AI + + +RV Y+++E Sbjct: 151 AHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIGDYAASMYAGIRVRYVSSE 205 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQV 294 F F ++I +N + R++D+LLIDD+QFLQG+ Q F H N+L D KQV Sbjct: 206 EFTNDFINSIANNRGSAFQARYRDVDILLIDDIQFLQGRAETQEAFFHTFNTLHDHDKQV 265 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V +D PP +L + R+RSR + G+ + D E R +IL+ + +Q E +L I + Sbjct: 266 VITSDLPPKQLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKK---AQSE--RLLIPD 320 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMR 410 +VL ++A V+++ REL+GA L+ +FA + L +A +L +++ + + Sbjct: 321 DVLEYIATVVSSNIRELEGA---LIRVSAFASLNRSTLDMSLAQTVLRDIIDQDDANVVS 377 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 DI A+++ +S +DL + R + V RQ+AMYL + T S P+IG+ FG+RDHT Sbjct: 378 PTDIITATAQYFKLSVDDLYGSSRSQAVATARQIAMYLCRERTSLSLPKIGQLFGNRDHT 437 Query: 471 TVLHAVRKVEKMLE 484 TV++A +K+ +++ Sbjct: 438 TVMYAYKKISDLMK 451 >gi|313202491|ref|YP_004041148.1| chromosomal replication initiator protein dnaa [Paludibacter propionicigenes WB4] gi|312441807|gb|ADQ78163.1| chromosomal replication initiator protein DnaA [Paludibacter propionicigenes WB4] Length = 463 Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 137/465 (29%), Positives = 240/465 (51%), Gaps = 19/465 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N + ++ S +K+ + Y +WF + ++I L VP+ F +I+ +Y++ + Sbjct: 4 NHDQLWNRCLSVIKDNISEASYNTWFAPIVALKYENSIFVLQVPSQFFVEYIEEKYIDLL 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS-P 152 E G + R + S + PS + + + S S + P Sbjct: 64 RMTLYREVG--VGTRLEYRVLIDKSSGRGTQIPSAAEQTKQKSTGSNSSYVNPYHKPQLP 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ + F+ IEG+SN++A TA SI NPLF++ G+GKTHL Sbjct: 122 EIDPQLNPAYNFNNLIEGNSNKLARTAGISIGNEPGKNI----FNPLFVYGQSGVGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI + + P RV+Y++A F ++ A+R N + + + ID+L++DD+Q Sbjct: 178 ANAIGVMTKQLHPEKRVLYVSANTFQIQYTDAVRSNTVNDFLNFYQTIDVLIVDDIQEFA 237 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q+ F H+ N L + KQ+V +DR P + L+ R+ +R + G+S + D+E+ Sbjct: 238 GKTGTQNTFFHIFNHLHQTGKQLVLTSDRSPIVMVGLEQRLLTRFKWGLSAEIEKPDFEL 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R SIL++++ L I++EV+ +A V + R+L+G L+ + A PI Sbjct: 298 RRSILQSKIY-----RDGLEISDEVVDFIAEHVVDNVRDLEGVLVSLLAHSTLANMPIDV 352 Query: 390 AEIADELLSHLVNTGETKKMR-IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A +A++++S +VN T+K+ +E I+ +V +++++S + + + R R VV+ RQ+AMYL Sbjct: 353 A-LAEKVISRIVNI--TRKVNTVEKIRDVVCEYFSLSIDAISTKSRKREVVQARQIAMYL 409 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 SK +T S IG G RDH TVLHA + V ++++D + V Sbjct: 410 SKQLTKSSLSSIGNTIGQRDHATVLHACKIVNDLMDSDKNFRSSV 454 >gi|28492968|ref|NP_787129.1| chromosomal replication initiator protein [Tropheryma whipplei str. Twist] gi|28572176|ref|NP_788956.1| chromosomal replication initiator protein DnaA [Tropheryma whipplei TW08/27] gi|61212757|sp|Q83N52|DNAA_TROWT RecName: Full=Chromosomal replication initiator protein DnaA gi|61212759|sp|Q83NZ5|DNAA_TROW8 RecName: Full=Chromosomal replication initiator protein DnaA gi|28410307|emb|CAD66693.1| chromosomal replication initiator protein DnaA [Tropheryma whipplei TW08/27] gi|28476008|gb|AAO44098.1| chromosomal replication initiator protein [Tropheryma whipplei str. Twist] Length = 478 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/333 (34%), Positives = 192/333 (57%), Gaps = 18/333 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++ RF F F+ G SN +A A+ S AE + NPLFI+ G+GKTHLL +I Sbjct: 143 VNPRFTFDNFVVGKSNELARAASISAAERPGKSF-----NPLFIYGDSGVGKTHLLHSIG 197 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N + P+LR+ Y+++E F F ++I + ++ R ID+L++DD+QFLQ K Sbjct: 198 NYAKFLFPSLRIKYVSSEDFTNDFINSISSGTSQKFQEKYRQIDILMVDDIQFLQKKQET 257 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q F H NSL +S++Q+V ++D PP +L + R+RSR + G+ + D E R +IL Sbjct: 258 QESFFHTFNSLHNSSRQLVISSDLPPKQLMGFEDRMRSRFECGLVCDIQKPDLETRIAIL 317 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 + + +KE ++ E+L ++A ++S REL+GA ++ SF + +A + Sbjct: 318 QKKCQNEKKE-----VSMEILTYIASCFSSSVRELEGALLRIFALASFNKEEINMTLAQK 372 Query: 396 LLSHLVNTGETKKMRIEDIQ--RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 +L L G + +I+ I+ + AKHY+++ +DL N RV + RQ+AMYL + +T Sbjct: 373 VLEDL---GAQRGDKIDPIEIIEITAKHYDLAASDLCGNSRVANISIARQIAMYLCRELT 429 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 S P++G FG RDH+T+++A R++ ++ D Sbjct: 430 DVSLPKLGYIFG-RDHSTIIYATRRISDLIGKD 461 >gi|302329715|gb|ADL19909.1| Chromosomal replication initiation protein [Corynebacterium pseudotuberculosis 1002] Length = 603 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 203/372 (54%), Gaps = 23/372 (6%) Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 S +P + + +P L+ + F +++ SN++ +AA ++AE + Y NP Sbjct: 239 SGTPRTREQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVAEKPARAY-----NP 293 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFI GLGKTHL+ A+ N + P LR+ Y+++E F + +++RD+ K R Sbjct: 294 LFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINSVRDDRQEAFKRKYR 353 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +D+L++DD+QFLQGK Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R Q Sbjct: 354 ELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPKQLTTLEDRLRTRFQ 413 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ + D E R +IL + A + + E + +A TS REL+GAF + Sbjct: 414 AGLIADIYPPDLETRIAILMKKAASE-----SIVADREAIELIASRFNTSIRELEGAFIR 468 Query: 378 LVFRHSFAPILTAE---------IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 + ++A +++ + IA++ L ++ +++ I A+++ + N Sbjct: 469 V---SAYASLMSPDKGKHRVDLRIAEKALEDMMPEQANEEITATTILAATAEYFEMDVNA 525 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L + + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A RKV K + Sbjct: 526 LKGSGKTRAVAHARQLAMYLCRELTDLSLPKIGEQFGGKDHTTVMYADRKVRKEITEKKE 585 Query: 489 LKKEVELLKRLI 500 E++LL + I Sbjct: 586 TYDEIQLLTQQI 597 >gi|304437932|ref|ZP_07397878.1| DNA-directed DNA replication initiator protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369072|gb|EFM22751.1| DNA-directed DNA replication initiator protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 483 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 115/345 (33%), Positives = 199/345 (57%), Gaps = 20/345 (5%) Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 T +P + L+ ++ F F+ G SN+ A+++A D+ G + NPLFI+ VGL Sbjct: 136 HTPAPDDATTLNPKYTFEAFVTGRSNQFPYAMAKAVA--DAPGLPS--HNPLFIYGGVGL 191 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ A+ + + P RV+Y+ + F F +IR+ ++ +ID+LLIDD Sbjct: 192 GKTHLMHAVGHKILADDPKKRVLYIASTDFTNEFIRSIREKNMDAFREKYYHIDVLLIDD 251 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF G+ Q EF N L D+ Q++ +DR P +++ L+ R+ SR GG V + Sbjct: 252 IQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQDVKGLEDRLISRFAGGAPVDIQP 311 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 ++E R +IL+ + +Q ED ++I +V+ ++A V ++ REL+GA +L+ +A Sbjct: 312 PEFETRVAILQKK---AQSED--VDIPADVVTYIASRVDSNIRELEGALTRLI---KYAS 363 Query: 387 ILTAEIADEL-----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 ++ I DE L + + + +++ +E I+R+V H+ ++ D+ S++R + P Sbjct: 364 MMRMPI-DETTCVAALGNYLRGEKGRRITMEMIERIVCTHFKVTSEDIRSSKRSNDIAYP 422 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 RQ+AMYL MT S+P IG F +RDH+TV+HA +K++ + E+D Sbjct: 423 RQIAMYLCHEMTEVSWPTIGGFF-NRDHSTVIHAHKKIQSLTESD 466 >gi|326335802|ref|ZP_08201982.1| replication initiation protein DnaA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692041|gb|EGD34000.1| replication initiation protein DnaA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 475 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 147/487 (30%), Positives = 257/487 (52%), Gaps = 30/487 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLK-FHSVLHNIVHLSVPTNFLKAWIKNRY 89 + + ++I+ S +K+ V DV+ WF+ ++ N + + VP+ F W+++ Y Sbjct: 1 MNTDVQNIWKNCLSFIKDNVTSDVFDVWFKPIEPVELTKDNTLVIMVPSMFFMEWLEDHY 60 Query: 90 LETI-TKLFQEEHSRIQGV-EILVRSVALPSVEKTASSPSITKLSPINTNI--------- 138 + I + L +E +R + + I + + + + T PS + + TN+ Sbjct: 61 INLIWSALTKELGTRPKLIYNIKMENNPNKAEQATEQLPSANRKA---TNMEALGYGQKP 117 Query: 139 --SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 S +P I+ + S L+ F FIEG SNR+A +A +I + G T+ Sbjct: 118 QESFNPYIV-PGLVEVKVDSQLNPNKNFDNFIEGESNRLARSAGMAITQ--RPGGTS--F 172 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI VGLGKTHL AI N ++ P +++Y+ AE F ++A A ++N + Sbjct: 173 NPLFIFGGVGLGKTHLAHAIGNEIQEKFPKKKILYIEAEDFTKQYAVAAKNNNRTDFIHF 232 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + ID+L+ID++QF K Q F + N L + KQ++ +D+ P +++ ++ R+ SR Sbjct: 233 YQQIDVLIIDNVQFFASKQGTQDVFFQIFNHLHQNGKQLILTSDKAPVDIQDVEQRLLSR 292 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+S L DY+MR +IL + L E ++EE++ ++A+ V T+ REL+G Sbjct: 293 FKWGLSAELQAPDYQMRKNILNSILYRDGVE-----MSEEIVDYIAQNVKTNIRELEGVN 347 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 L+ F +T ++A + + +V + K++ +E IQ +V++++ ++ +L S R Sbjct: 348 TSLMAEALFNKKEITLDLAKKAVDKIVKNIK-KEITVEYIQEIVSEYFQLTIEELQSKTR 406 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R VV+ RQ+AM+ +K T S IG+ G RDH TVLHA + V+ + ETD +K + Sbjct: 407 KRHVVQARQLAMFFAKKYTKLSLANIGKYIGKRDHATVLHACKTVDNLNETDKQFRKFLT 466 Query: 495 LLKRLIS 501 L IS Sbjct: 467 DLNTKIS 473 >gi|57236915|ref|YP_178030.1| chromosomal replication initiation protein [Campylobacter jejuni RM1221] gi|71151795|sp|Q5HXF5|DNAA_CAMJR RecName: Full=Chromosomal replication initiator protein DnaA gi|57165719|gb|AAW34498.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni RM1221] Length = 440 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 245/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSAKQSNKSTKI--------DIAH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FDSFVVGDSNKYAYGACKAITHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|255011256|ref|ZP_05283382.1| chromosomal replication initiation protein [Bacteroides fragilis 3_1_12] gi|313149067|ref|ZP_07811260.1| chromosomal replication initiator protein dnaA [Bacteroides fragilis 3_1_12] gi|313137834|gb|EFR55194.1| chromosomal replication initiator protein dnaA [Bacteroides fragilis 3_1_12] Length = 475 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 140/494 (28%), Positives = 257/494 (52%), Gaps = 39/494 (7%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTN 79 ++ +V + RCLE+ +++ V Y +WF + + + VP+ Sbjct: 3 ESSHVGLWNRCLEI------------IRDNVPESTYKTWFVPIVPLKYEDKTLIVQVPSQ 50 Query: 80 FLKAWIKNRYLE----TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN 135 F ++++++++ T+ K+ + + V + S + E T S +I + Sbjct: 51 FFYEFLEDKFVDLLRKTLYKVIGDGTKLMYNVLVDKSSGTTVNQESTTRSTAIPQSGLPR 110 Query: 136 TNISKSPIIL---GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 + K+P +L Q + P L+ + F TFIEG SN+++ + A+++AE + Sbjct: 111 VDERKAPGLLRAPAVQDLDP----HLNPNYNFETFIEGYSNKLSRSVAEAVAE---NPAK 163 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 TV NPLF+H + G+GKTHL AI + P+ RV+Y++A F ++ ++R+N + Sbjct: 164 TV-FNPLFLHGASGVGKTHLANAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTND 222 Query: 253 LKDSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + + ID+L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R Sbjct: 223 FINFYQTIDVLIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEER 282 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + +R + G+ L E+R +IL+N++ + P EV+ ++A V S R+L Sbjct: 283 LLTRFKWGMVAELEKPTVELRKNILRNKIHRDGLQFP-----SEVIDYIAENVNESVRDL 337 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRND 428 +G ++ + + I EI +L +V ETK + I+DI +V KH+++ + Sbjct: 338 EGIVISIM---AHSTIYNKEIDLDLAQRIVRKVVRSETKAVTIDDIINVVCKHFDLESSA 394 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + + R R VV+ RQVAMYL+K T S +IG+ G++DH TVLHA + V+ E D + Sbjct: 395 IHTKSRKREVVQARQVAMYLAKTHTDFSTSKIGKFIGNKDHATVLHACKTVKGQCEVDKS 454 Query: 489 LKKEVELLKRLISE 502 + ++E ++ L+ + Sbjct: 455 FRSDLENIETLLKK 468 >gi|111219506|ref|YP_710300.1| chromosomal replication initiator protein [Frankia alni ACN14a] gi|111147038|emb|CAJ58685.1| Chromosomal replication initiator protein [Frankia alni ACN14a] Length = 534 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 129/348 (37%), Positives = 197/348 (56%), Gaps = 19/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+VF TF+ G SNR AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 193 LNPRYVFETFVIGDSNRFPHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 247 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++K PN RV Y+++E F F ++IRD+ + R+ID+LL+DD+QFL+ K Sbjct: 248 HYALKLYPNTRVKYVSSEEFTNDFINSIRDDRQQAFQRRYRDIDVLLVDDIQFLENKERT 307 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L D KQ+V ++DR P +L +L+ R+RSR + G+ + D E R +IL Sbjct: 308 QEEFFHTFNVLHDGEKQIVISSDRSPKQLSALEDRLRSRFEWGLMTDITPPDLETRIAIL 367 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + A +L + +VL ++A + + REL+GA L+ +FA + + + Sbjct: 368 SKKAATE-----RLPVPPDVLEYIATHIERNIRELEGA---LIRVAAFASLNKSHVDRTL 419 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ + I A ++ +S +DL R R +V RQ+AMYL + + Sbjct: 420 AEIVLRDLIPDAGNPDITAAAIMNATAAYFGVSMDDLCGTSRSRVLVTARQIAMYLCREL 479 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 T S P+IG+ FG RDHTTV+HA RK+ ++ + +V EL R+ Sbjct: 480 TDLSLPKIGQHFGGRDHTTVMHADRKIRGLMAERRAIYNQVTELTNRI 527 >gi|302205158|gb|ADL09500.1| Chromosomal replication initiation protein [Corynebacterium pseudotuberculosis C231] gi|308275398|gb|ADO25297.1| Chromosomal replication initiation protein [Corynebacterium pseudotuberculosis I19] Length = 603 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 118/372 (31%), Positives = 203/372 (54%), Gaps = 23/372 (6%) Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 S +P + + +P L+ + F +++ SN++ +AA ++AE + Y NP Sbjct: 239 SGTPRTREQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVAEKPARAY-----NP 293 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFI GLGKTHL+ A+ N + P LR+ Y+++E F + +++RD+ K R Sbjct: 294 LFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINSVRDDRQEAFKRKYR 353 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +D+L++DD+QFLQGK Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R Q Sbjct: 354 ELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPKQLTTLEDRLRTRFQ 413 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ + D E R +IL + A + + E + +A TS REL+GAF + Sbjct: 414 AGLIADIYPPDLETRIAILMKKAASE-----SIVADREAIELIASRFNTSIRELEGAFIR 468 Query: 378 LVFRHSFAPILTAE---------IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 + ++A +++ + IA++ L ++ +++ I A+++ + N Sbjct: 469 V---SAYASLMSPDKGKHRIDLRIAEKALEDMMPEQANEEITATTILAATAEYFEMDVNA 525 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L + + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A RK+ K + Sbjct: 526 LKGSGKTRAVAHARQLAMYLCRELTDLSLPKIGEQFGGKDHTTVMYADRKIRKEITEKKE 585 Query: 489 LKKEVELLKRLI 500 E++LL + I Sbjct: 586 TYDEIQLLTQQI 597 >gi|238021640|ref|ZP_04602066.1| hypothetical protein GCWU000324_01542 [Kingella oralis ATCC 51147] gi|237866254|gb|EEP67296.1| hypothetical protein GCWU000324_01542 [Kingella oralis ATCC 51147] Length = 519 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 119/342 (34%), Positives = 190/342 (55%), Gaps = 13/342 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG N++A A+SIAE NP F++ S GLGKTHL+QAI Sbjct: 182 LSPDYTFETLVEGKGNQLAANVAKSIAEKPGDSM----YNPFFVYGSTGLGKTHLVQAIG 237 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 N ++ P +V Y+ ++ ++ F + +R+ K + +LL+IDD+QF+ GK Sbjct: 238 NELLRLNPKAKVRYMHSDEYLKTFMATVRNKTWDTFKQQYLHYNLLIIDDIQFISGKDRT 297 Query: 278 HEFCHLLNSLLDS-AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 E L S +Q++ D+ PS LE +D R+ SR G+++ L + EMR IL Sbjct: 298 MEEFFFLFEHFHSRDQQIILTCDQLPSSLEDMDKRLVSRFSWGMTIRLEPPELEMRVDIL 357 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI--AD 394 + + + + + E+ +A+ V + REL+GA N+++ R F+ T +I A Sbjct: 358 ERKAQAA-----GIMLEEDAATFIAQNVKQNVRELEGALNRVIARCRFSKASTIDIDLAT 412 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L +V + K + +E I + VA HY+IS D+L +R R + RPRQ+AM ++K +T Sbjct: 413 DALQDIVASN-YKPITVELIMKAVADHYHISIRDILGKKRSRNLARPRQIAMAITKELTN 471 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S P IG FG RDHTTV+HAV+ + K+ + + LK++ E L Sbjct: 472 LSLPAIGDAFGGRDHTTVMHAVKTIAKLRQDEPELKQDYEKL 513 >gi|224437107|ref|ZP_03658088.1| chromosomal replication initiation protein [Helicobacter cinaedi CCUG 18818] gi|313143577|ref|ZP_07805770.1| chromosomal replication initiator protein dnaA [Helicobacter cinaedi CCUG 18818] gi|313128608|gb|EFR46225.1| chromosomal replication initiator protein dnaA [Helicobacter cinaedi CCUG 18818] Length = 443 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 137/462 (29%), Positives = 238/462 (51%), Gaps = 36/462 (7%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +LKN++ Y+S+ +++ ++ VP F+ WIK+ YLE+I F EE+ Sbjct: 9 KLKNKLSDLEYSSYISLMEYDESASRTDLEVFYVPNIFVANWIKSNYLESIADAFMEENP 68 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 EI +R EK + S+ N +K P + +S L+ + Sbjct: 69 NGIRPEIHIRVK-----EKNQNVKSL--------NFNKIPTHFQQNLLS------LNPFY 109 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ G SN A T A+ +A + Y NP+ + GLGKTHLL AI N + Sbjct: 110 TFENFVVGKSNEHAHTIAKVVARQQALAY-----NPVLFYGKSGLGKTHLLHAIGN--VV 162 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFC 281 ++ N V+Y TAE + F S IR + ++ R D LLIDD+QFL + +Q E Sbjct: 163 KEQNKNVLYTTAEELLNDFISKIRRGTMDSFREKYRKCDYLLIDDVQFLGNREGVQEELL 222 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N+L + KQ+V +D+PP E++ L+ R+RSR +GGV + + E + SI++ + Sbjct: 223 NTFNALYSTQKQIVMTSDKPPKEIKGLEDRLRSRFEGGVMAEITNPELETKISIIELKCQ 282 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA-EIADELLSHL 400 I+ ++N ++EV+ ++A + + R+++G + + S +P A ++A +L + Sbjct: 283 IN-----RINFDKEVIDYIASNIYGNIRQIEGILSTINTHMSLSPEANALKVAKNVLKNY 337 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 N + + +++I ++V K NI +++LS R R V R+V +YL++ +T S P I Sbjct: 338 QNE-RLEGVTLDNIIKLVGKELNIKPSEILSKERSRKVAFARRVVIYLARALTINSMPMI 396 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +DH++V A++ +E + TD K +E LK I + Sbjct: 397 AKELNMKDHSSVSKALKAIESEIATDSATKGIIEELKSKIQQ 438 >gi|319440487|ref|ZP_07989643.1| chromosomal replication initiation protein [Corynebacterium variabile DSM 44702] Length = 564 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 199/351 (56%), Gaps = 24/351 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G SN+ A +++AE Y NPLFI+ GLGKTHLL AI Sbjct: 223 LNPKYTFDTFVTGPSNQFPAAACRAVAENPGKAY-----NPLFIYGQPGLGKTHLLHAIG 277 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDN-CALN-LKDSLRNIDLLLIDDMQFLQGK- 274 + + + +P +RV Y+++E F +AI+ AL+ K + RN+DLL++DD+QFLQGK Sbjct: 278 HYARELKPEIRVRYVSSEEMTNEFINAIQGGPLALDQFKRNYRNLDLLIVDDIQFLQGKE 337 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L + Q+V ++DRPPS+L +L+ R+R+R +GG++ + D E R + Sbjct: 338 STQEEFFHTFNALYQANHQIVLSSDRPPSQLTTLEDRLRTRFEGGLTTDVKTPDLETRMA 397 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAE- 391 IL + ++ P+ +VL +A +S REL+GA ++V S PI A Sbjct: 398 ILAKKSLLNGAAVPR-----DVLEFIASRNESSIRELEGALTRVVAYCSMTGEPITIAAA 452 Query: 392 --IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + ++L V T +M IE ++A H+ +S + L +VR +V RQ M+L+ Sbjct: 453 EVVVKDILPQDVKI--TPEMVIE----VIADHFTVSIDQLTGPSKVRKIVTARQFGMFLT 506 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + S +IG +G RDHTTV+HA +K+ ++ + + ++ + L + I Sbjct: 507 REYCEMSTTKIGEVYGGRDHTTVMHAEKKMRTAIQENTAIFEQFQELTQKI 557 >gi|237784638|ref|YP_002905343.1| chromosomal replication initiator protein [Corynebacterium kroppenstedtii DSM 44385] gi|237757550|gb|ACR16800.1| chromosomal replication initiator protein [Corynebacterium kroppenstedtii DSM 44385] Length = 605 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/329 (37%), Positives = 190/329 (57%), Gaps = 15/329 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F + G NRV AA ++AE + Y NPLFI GLGKTH+L AI Sbjct: 267 LNENYTFDNLVAGEGNRVVRAAAIAVAENPAQAY-----NPLFIWGGSGLGKTHILHAIG 321 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + +++ +PNLRV Y++ E + + ++IR+N + K R+ D+LL+DD+QFL GK Sbjct: 322 HRALELRPNLRVRYVSIEEYTNEWINSIRNNRGEDFKRKYRSFDILLVDDIQFLAGKPET 381 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ+V +DR P EL L+PR+R+R Q G + + D E R +IL Sbjct: 382 QIEFFHNFNALHGAQKQIVLCSDRSPKELTELEPRLRTRFQWGFTQDIQKPDLETRIAIL 441 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + + +++E+ + EVL +A S REL+GA N+++ S P+ T E+A Sbjct: 442 RLK---AEREN--AQVPSEVLSFIAEQKAESVRELEGALNKVLIVSSIQHTPV-TLEMAR 495 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L LV E ++ I + A+++N++ DL + R + RQVAMYL + +T Sbjct: 496 DQLQDLV-APEVVEITAPTIMSVTAEYFNLTTADLTGPGKARPIAHARQVAMYLCRELTD 554 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 S P++G +FG RDHTT ++A RK+ K + Sbjct: 555 LSLPKVGNKFGGRDHTTAMYAERKIRKEM 583 >gi|254818679|ref|ZP_05223680.1| chromosomal replication initiation protein [Mycobacterium intracellulare ATCC 13950] Length = 511 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 145/451 (32%), Positives = 239/451 (52%), Gaps = 40/451 (8%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK-LFQEEHSRIQ-GVEIL---- 110 +W ++ +++ LSVP++F++ I+ IT L + +IQ GV I Sbjct: 46 AWLNLVRPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPPD 105 Query: 111 -VRSVALPSVEKTASS----PSITKLSPINTNISKSPIILGKQTISPVF----------- 154 V +P E S P + + G Q P + Sbjct: 106 DVEDALIPPAEPFPGSDGSIPGDDAALDTDEPFENGEAVDGAQPGWPNYFTERPHAIDPA 165 Query: 155 ---GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTH Sbjct: 166 VAAGTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTH 220 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF+ Sbjct: 221 LLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFI 280 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 +GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E Sbjct: 281 EGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELE 340 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APIL 388 R +IL+ + +Q E +L + ++VL +A ++ + REL+GA ++ S PI Sbjct: 341 TRIAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPID 395 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A +A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL Sbjct: 396 KA-LAEIVLRDLIADASTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYL 454 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 455 CRELTDLSLPKIGQAFG-RDHTTVMYAQRKI 484 >gi|86152361|ref|ZP_01070571.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 260.94] gi|315123617|ref|YP_004065621.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840658|gb|EAQ57910.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 260.94] gi|315017339|gb|ADT65432.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 440 Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 245/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELNENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSAKQSNKSTKI--------DIAH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAIIHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|315928462|gb|EFV07774.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 440 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/462 (27%), Positives = 241/462 (52%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ + Sbjct: 10 LKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYEVQSGN 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +++ + T S TK+ + I + TI L+ F Sbjct: 70 --------KAIINIQAQNTKQSNKSTKIDIAH--------IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAITHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R+ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRTVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|315605508|ref|ZP_07880545.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312775|gb|EFU60855.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 476 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 144/454 (31%), Positives = 231/454 (50%), Gaps = 37/454 (8%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 +++GP V S + + + + L+VP F K WI+++ +T R + Sbjct: 20 DELGP-VATSMLRSARPLGDIEGTILLAVPNGFTKQWIEDKAQSKLTAALSVNLGRTVRI 78 Query: 108 EILVRSVALPSVEKTASS--PSITKLSPINTNISKSPIILGKQTISPVF-GSPLDS---- 160 I V PS+E A P+ + P K+P K+ SP +P DS Sbjct: 79 AITVD----PSLEVVAEDEEPAPVQQRPKE----KAPQPARKEAHSPALVSAPTDSGPTH 130 Query: 161 ---RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 +F F TF+ G SNR A AA + +E + NPLFI+ GLGKTHLLQAI Sbjct: 131 LNPKFTFDTFVIGPSNRFAHAAALAASETPGTAF-----NPLFIYGDSGLGKTHLLQAIG 185 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQ 272 + ++ P+L+V Y+ +E F F +AIR N N R +D+LLIDD+QF+ Sbjct: 186 HNALSMMPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIG 245 Query: 273 GKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K E F H N+L + KQ+V +D PP++L+ + R+RSR G+ V + D E Sbjct: 246 DKEQTVEGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLET 305 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTA 390 R +IL + + L + EV +VA ++++ REL+GA ++ + + + Sbjct: 306 RIAILHKK-----ADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDL 360 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A +L V+ + ++ + I A ++ ++ + S+ R VV RQ+AMYL + Sbjct: 361 NLAQMMLKDFVSNPDDNEITVSLIMSQCAVYFGVTIEQMGSSERSHNVVEARQIAMYLCR 420 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 +T S P+IG+ FG RDHTTV+HA +K+ K+++ Sbjct: 421 ELTDLSLPKIGQAFG-RDHTTVMHANKKISKLMK 453 >gi|315931305|gb|EFV10274.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 327] Length = 440 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 245/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSAKQSNKSTKI--------DIAH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAIIHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|169627109|ref|YP_001700758.1| chromosomal replication initiation protein [Mycobacterium abscessus ATCC 19977] gi|226735827|sp|B1MDH6|DNAA_MYCA9 RecName: Full=Chromosomal replication initiator protein DnaA gi|169239076|emb|CAM60104.1| Chromosomal replication initiator protein DnaA [Mycobacterium abscessus] Length = 491 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 114/325 (35%), Positives = 196/325 (60%), Gaps = 15/325 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++R+ F +F+ G+SNR + AA +++E + Y NPLFI GLGKTHLL A Sbjct: 152 LNARYTFESFVIGASNRFSHAAAVAVSEAPARAY-----NPLFIWGESGLGKTHLLHAAG 206 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + P +RV Y++ E F F +++RD+ + K S R+ID+LL+DD+QF++GK I Sbjct: 207 NYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRRVAFKRSYRDIDVLLVDDIQFIEGKEGI 266 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP L +L+ R+R+R + G+ + + E R +IL Sbjct: 267 QEEFFHTFNTLHNANKQIVISSDRPPKGLATLEDRLRTRFEWGLITDVQPPELETRIAIL 326 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + + + +L++ ++VL +A + + REL+GA ++ S +PI + +A+ Sbjct: 327 RKKAQMD-----RLDVPDDVLELIASRIERNIRELEGALIRVTAFASLNKSPIELS-LAE 380 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L L+ ++ I + A++++ + +L + R + + RQ+AMYL + +T Sbjct: 381 IVLRDLIPDANAIQISAATIMAVTAEYFDTTVEELRGPGKTRALAQARQIAMYLCRELTD 440 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKV 479 S P+IG+ FG RDHTTV++A +KV Sbjct: 441 LSLPKIGQTFG-RDHTTVMYADKKV 464 >gi|302535573|ref|ZP_07287915.1| chromosomal replication initiator protein DnaA [Streptomyces sp. C] gi|302444468|gb|EFL16284.1| chromosomal replication initiator protein DnaA [Streptomyces sp. C] Length = 599 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 202/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLF++ GLGKTHLL AI Sbjct: 260 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFVYGESGLGKTHLLHAIG 314 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R +D+LL+DD+QFL K Sbjct: 315 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYREMDILLVDDIQFLASKEST 374 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 375 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 434 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 435 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 486 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +++L +L+ GE I DI A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 487 TEDVLKNLIPGGEDSAPEITASDIMAATADYFGLTVDDLCGSSRSRVLVTARQIAMYLCR 546 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 547 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 596 >gi|227496605|ref|ZP_03926883.1| chromosomal replication initiator protein DnaA [Actinomyces urogenitalis DSM 15434] gi|226833885|gb|EEH66268.1| chromosomal replication initiator protein DnaA [Actinomyces urogenitalis DSM 15434] Length = 525 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/350 (37%), Positives = 201/350 (57%), Gaps = 19/350 (5%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ R+ F+T+++G SNR+A TAA ++AE S Y NPLFI+ GLGKTHLL A Sbjct: 180 SRLNPRYTFATYVQGKSNRLARTAAAAVAEAPSRAY-----NPLFIYGGSGLGKTHLLHA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + + K P + V Y+ +E F+ F +++ D N KD RN+D+LL+DD+QF +GK Sbjct: 235 IGHYARKLYPGITVKYVNSEEFVSDFIASVADGQMRNFKDRYRNVDILLVDDVQFFEGKE 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF H N+L + KQ+V +D+P EL+ + R+ SR Q G+ + D E R + Sbjct: 295 QTLEEFFHTFNALRIAEKQIVLTSDQPALELKGFNNRLISRFQEGLVADVQPPDLETRQA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 I L + + D +++ E+VL ++A VTT+ REL+GA LV +FA + + Sbjct: 355 I----LTLKARAD-GISVTEDVLEYIASRVTTNIRELEGA---LVRVTAFASLNKQPIDR 406 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A+ L ++ +++ I VA +++++ +DL R + V PR +AMYL + Sbjct: 407 TLAEVALKDVITDPTGEEITSGLIMGQVADYFDMTIDDLCGESRRKNFVHPRHIAMYLCR 466 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 +T S P IGR FG RDHTTV+ A RK+ +M E T + EL R+ Sbjct: 467 ELTELSLPNIGREFGGRDHTTVMSAHRKITTQMGERRETFNEVNELTSRI 516 >gi|300857418|ref|YP_003782401.1| chromosomal replication initiator protein [Corynebacterium pseudotuberculosis FRC41] gi|300684872|gb|ADK27794.1| chromosomal replication initiator protein [Corynebacterium pseudotuberculosis FRC41] Length = 526 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 118/372 (31%), Positives = 203/372 (54%), Gaps = 23/372 (6%) Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 S +P + + +P L+ + F +++ SN++ +AA ++AE + Y NP Sbjct: 162 SGTPRTREQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVAEKPARAY-----NP 216 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFI GLGKTHL+ A+ N + P LR+ Y+++E F + +++RD+ K R Sbjct: 217 LFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINSVRDDRQEAFKRKYR 276 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +D+L++DD+QFLQGK Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R Q Sbjct: 277 ELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPKQLTTLEDRLRTRFQ 336 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ + D E R +IL + A + + E + +A TS REL+GAF + Sbjct: 337 AGLIADIYPPDLETRIAILMKKAASE-----SIVADREAIELIASRFNTSIRELEGAFIR 391 Query: 378 LVFRHSFAPILTAE---------IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 + ++A +++ + IA++ L ++ +++ I A+++ + N Sbjct: 392 VS---AYASLMSPDKGKHRIDLRIAEKALEDMMPEQANEEITATTILAATAEYFEMDVNA 448 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L + + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A RK+ K + Sbjct: 449 LKGSGKTRAVAHARQLAMYLCRELTDLSLPKIGEQFGGKDHTTVMYADRKIRKEITEKKE 508 Query: 489 LKKEVELLKRLI 500 E++LL + I Sbjct: 509 TYDEIQLLTQQI 520 >gi|288801133|ref|ZP_06406589.1| DNA replication initiator protein, ATPase [Prevotella sp. oral taxon 299 str. F0039] gi|288332067|gb|EFC70549.1| DNA replication initiator protein, ATPase [Prevotella sp. oral taxon 299 str. F0039] Length = 471 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 141/456 (30%), Positives = 233/456 (51%), Gaps = 21/456 (4%) Query: 55 YASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 +++WF ++ HS + N V L VP+ + +I+ Y+ + ++ ++ + Sbjct: 25 FSTWFSTIQLHSYVEKENCVILQVPSEMARDYIEEHYMRLLANALRDNFGSSVKLKYSIS 84 Query: 113 SVALP-SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 LP S A + N + + + + LD+ ++F +FI G Sbjct: 85 MAKLPHSANNQAGEQNDNDGLYSGNNSFPNSDSYQDNSKREAWRNYLDNHYIFDSFIRGE 144 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SN VAL+ + SIAE H T + NP+F+ G GKTHL+ AI K N +V+Y Sbjct: 145 SNAVALSVSLSIAE---HP-TRRQFNPMFLFGPSGCGKTHLINAIGLRIAKLYENKKVLY 200 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDS 290 ++A+ F ++ SA N + +NID+L++DD+Q GK E F ++ N L + Sbjct: 201 VSAKDFEVQYTSAQYTNKINDFMHFYQNIDVLIVDDIQSWAGKKKTLETFFYIFNHLFRN 260 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 K+++ A DRPP+ELE ++ R+ +R GV LG + ++ ILK+++ K D L Sbjct: 261 GKRIILACDRPPAELEGMEERLLTRFVWGVVEELGKPNIQLCIDILKSKV----KRDG-L 315 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVNTGET 406 +I ++V+ ++A S R L+G N L ++F+ L EI ADE + LV + Sbjct: 316 SIPDDVIRYIAERANGSIRYLEGVINTL---YAFSINLGREIDIAFADERIKKLVKI-DD 371 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + E+I V K +++S + S R V RQVAMYL++ T S IGR G Sbjct: 372 KAISTEEIIDAVCKQFDVSSTAIGSRSRKHDFVVARQVAMYLAQKYTNMSISRIGRLVGG 431 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 RDH TV+H+ +VEK L+TD V++L+++ + Sbjct: 432 RDHATVIHSCNQVEKRLKTDKDFASSVKILEQIFDK 467 >gi|332668533|ref|YP_004451540.1| chromosomal replication initiator protein DnaA [Cellulomonas fimi ATCC 484] gi|332337570|gb|AEE44153.1| chromosomal replication initiator protein DnaA [Cellulomonas fimi ATCC 484] Length = 500 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 208/369 (56%), Gaps = 23/369 (6%) Query: 138 ISKSPIILG-KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + P+ G KQ P + L+ ++ F TF+ GSSNR A AA ++AE + Y Sbjct: 142 VDDRPLPPGRKQAAEP---ARLNPKYQFETFVIGSSNRFAHAAAVAVAEAPAKAY----- 193 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI+ GLGKTHLL AI + + P +RV Y+ +E F F ++I + A + Sbjct: 194 NPLFIYGDSGLGKTHLLHAIGHYAYNLYPGVRVRYVNSEEFTNDFINSISEGKAGAFQRR 253 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R +D+LLIDD+QFLQGK EF H N+L ++ KQVV +D PP +L + R+RSR Sbjct: 254 YREVDVLLIDDIQFLQGKEQTMEEFFHTFNTLHNANKQVVITSDLPPKQLNGFEDRMRSR 313 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+ + D E R +IL+ + + + P +VL ++A ++T+ REL+GA Sbjct: 314 FEWGLITDVQPPDLETRIAILRKKAGSERLQAPP-----DVLEYIASKISTNIRELEGA- 367 Query: 376 NQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 L+ +FA + + +A+ +L L+ +T ++ + A ++ +S +DL Sbjct: 368 --LIRVTAFANLNRQQVDLSLAEIVLKDLITDEQTAEITATQVIGQTAAYFGLSIDDLCG 425 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 + R R +V RQ+AMYL + +T S P+IG+ FG RDHTTV+HA RK+ +++ ++ Sbjct: 426 SSRSRVLVTARQIAMYLCRELTDLSLPKIGQAFGGRDHTTVMHANRKIRELMAERRSIYN 485 Query: 492 EV-ELLKRL 499 +V EL R+ Sbjct: 486 QVTELTNRI 494 >gi|31791178|ref|NP_853671.1| chromosomal replication initiation protein [Mycobacterium bovis AF2122/97] gi|32700077|sp|P49991|DNAA_MYCBO RecName: Full=Chromosomal replication initiator protein DnaA gi|31616763|emb|CAD92863.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycobacterium bovis AF2122/97] Length = 507 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 147/450 (32%), Positives = 237/450 (52%), Gaps = 42/450 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE--HSRIQGVEILV--- 111 +W ++ +++ LSVP++F++ I+ IT H GV I Sbjct: 46 AWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPAT 105 Query: 112 ----RSVALPSVEKTASSPSITKLSPINTNISKSPIILG--------------KQTISPV 153 + PS +SP T N I S G + T S Sbjct: 106 DEADDTTVPPSENPATTSPDTTT---DNDEIDDSAAARGDNQHSWPSYFTERPRNTDSAT 162 Query: 154 FG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G + L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHL Sbjct: 163 AGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHL 217 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++ Sbjct: 218 LHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIE 277 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E Sbjct: 278 GKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELET 337 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILT 389 R +IL+ + +Q E +L I ++VL +A ++ + REL+GA ++ S PI Sbjct: 338 RIAILRKK---AQME--RLAIPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDK 392 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL Sbjct: 393 A-LAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLC 451 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 452 RELTDLSLPKIGQAFG-RDHTTVMYAQRKI 480 >gi|300726801|ref|ZP_07060231.1| chromosomal replication initiator protein DnaA [Prevotella bryantii B14] gi|299775914|gb|EFI72494.1| chromosomal replication initiator protein DnaA [Prevotella bryantii B14] Length = 469 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 134/452 (29%), Positives = 231/452 (51%), Gaps = 29/452 (6%) Query: 55 YASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 Y +WF+ + F S + L++P+ F +++ Y++ +TK+ QGV + R Sbjct: 25 YNTWFKPIVFESYNQATKTLLLNIPSTFFYEYLEANYVDLLTKVLTRTFG--QGVRLNYR 82 Query: 113 SVAL---PSVEKTASSPSITKLSP---INTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + P+ + + PS P + TN + S K P S L++R F Sbjct: 83 VVVVKNPPTTQNIEADPSDQAPKPQSSLETNQAPSVSDAAKPQDIP---SHLNNRLTFDN 139 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 ++EG SN++ T SIAE H Y + + NP FI+ G GKTHL+ AI K P+ Sbjct: 140 YLEGESNKLTRTVGVSIAE---HPYNS-QFNPFFIYGPSGCGKTHLVNAIGLKIKKLYPD 195 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLN 285 RV+Y++A+ F ++ A+ +N + + ID L+IDD+Q GK E F H+ N Sbjct: 196 SRVLYISAKLFSVQYTQAVLENHTNDFIAFYQTIDTLIIDDVQEWMGKTKTLETFFHIFN 255 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L + K+++ A DRPP L + R+ +R G+ + + ++ I+K+++ + Sbjct: 256 HLFRNNKRIILACDRPPVSLTGMPDRMLTRFSCGLIAEMEKPNVQLCIDIMKHKM----R 311 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTG- 404 D L+I+++VL ++A+ S R+L G NQL+ +++ + ++I +L + Sbjct: 312 RD-GLDIHDDVLTYIAQNANCSVRDLQGTINQLL---AYSIVYNSKIDIKLAKRCIERAV 367 Query: 405 --ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + + + ++DI V HYN++ ++ S R R V RQV+MYL + T IG Sbjct: 368 KVDDRPLTVDDILEQVCNHYNVTSTNINSRSRKREYVIARQVSMYLCQKYTKMPASRIGM 427 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 G RDH+TV+H+ +VE L+TD E++ Sbjct: 428 LVGKRDHSTVVHSCNQVETRLKTDKKFFDEIQ 459 >gi|46445941|ref|YP_007306.1| chromosomal replication initiation protein [Candidatus Protochlamydia amoebophila UWE25] gi|46399582|emb|CAF23031.1| putative replication initiation protein dnaA [Candidatus Protochlamydia amoebophila UWE25] Length = 461 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 133/477 (27%), Positives = 239/477 (50%), Gaps = 31/477 (6%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 +K L ++++T +K + P + +W ++ V L +P F++ ++ Sbjct: 11 NKNMLTSETQNVWTQFLQFVKTRCSPAAFGNWLAPIRVIDCSTEEVTLEIPNIFVQEYLL 70 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 + Y + + + S P++ + P + P + +IS S Sbjct: 71 SNYKKDLCAFLPVDMS------------GEPAIRFIIAPPQKKIIPPNHFSISSSQ---- 114 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K+ SP L++ + F FIEG +N+ +AA +A Y NPLFIH VG Sbjct: 115 KEEQSPNSDVKLNNNYRFENFIEGPTNQFVKSAAMGVALRPGQSY-----NPLFIHGGVG 169 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLI 265 LGKTH+L +I + + LRV +T E F+ ++R+ +K R+ ID+LL+ Sbjct: 170 LGKTHILHSIGHYIKENHKKLRVQCITTEAFINDLVDSLRNKSVDRMKKFYRSEIDVLLV 229 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFLQ +L + E + +L + Q+V +D+PPS L+ L R +++GG+ + Sbjct: 230 DDIQFLQNRLNFEEELSYTFEALKNKGAQIVITSDKPPSLLK-LSERTIGKMEGGLVAHM 288 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 G+ + E R +IL+ + E L+I +V +A + + R+L+GA N+L Sbjct: 289 GIPELETRVAILQYK-----AEQKGLHIPHKVAFFIAEHIHNNVRQLEGAINRLSAHCRL 343 Query: 385 API-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +T E+ L ++ +K+ +E I + VA + + +DL + R + + PRQ Sbjct: 344 LDLNITEELVSRTLREMLQQAPREKISVEQILKSVAAVFQVRVSDLRGSTRTKDIALPRQ 403 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 VAMYL+K M S +G FG + H+T+LHA + +EK + +D TL++++ +++R I Sbjct: 404 VAMYLAKEMINESLIMLGASFG-KTHSTILHACKNIEKKVASDETLRRQIGMVRRNI 459 >gi|68535063|ref|YP_249768.1| chromosomal replication initiator protein [Corynebacterium jeikeium K411] gi|123775787|sp|Q4JYF7|DNAA_CORJK RecName: Full=Chromosomal replication initiator protein DnaA gi|68262662|emb|CAI36150.1| chromosomal replication initiator protein [Corynebacterium jeikeium K411] Length = 583 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/391 (33%), Positives = 212/391 (54%), Gaps = 28/391 (7%) Query: 125 SPSITKLSPINTNISKSPIILGKQTISP----VFGSPLDSR------FVFSTFIEGSSNR 174 SP+ T+ + T +P T SP F LD + F F+ GSSN Sbjct: 200 SPTPTRWTNKETAHRPAPRHTSPHTPSPQPSSSFNDGLDGESLLNKNYTFENFVVGSSNN 259 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A +++AE + Y NPLFI GLGKTHLL AI + + + QPN+RV Y+++ Sbjct: 260 FAAAACRAVAEAPAKAY-----NPLFIWGESGLGKTHLLHAIGHYAKELQPNMRVKYVSS 314 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F ++I ++ + K RN+D+L++DD+QFLQ K Q EF H N+L + KQ Sbjct: 315 EELTNDFINSIANDTRESFKRRYRNLDMLIVDDIQFLQNKESTQEEFFHTFNALHQANKQ 374 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V ++DRPP +L +L+ R+R+R +GG+ + D E R +IL + E + + Sbjct: 375 IVLSSDRPPRQLTTLEDRLRTRFEGGLITDVQTPDLETRIAILTKK-----AESDNVQLP 429 Query: 354 EEVLMHVARTVTTSGRELDGAFNQL----VFRHSFAPILTAEIADELLSHLVNTGETKKM 409 E+V + +A S RELDGA ++ H + TAEIA L + + ++ Sbjct: 430 EDVKVLIASRYEKSIRELDGALIRVTAYCALSHEPLTVETAEIA---LRDISPADQDVEI 486 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 + + +VA ++N++ ++L+ R + V+ RQ+AMYL + +T S P++G FG RDH Sbjct: 487 VPQHVIEVVANYFNLTTDELVGKGRAKKFVQARQIAMYLCRELTDLSLPKLGSAFGGRDH 546 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TTV++A R+V + L + + +V+ L + I Sbjct: 547 TTVMYAERRVRESLSENKKVFDQVQELTQKI 577 >gi|203284345|ref|YP_002222085.1| chromosomal replication initiator protein [Borrelia duttonii Ly] gi|226735781|sp|B5RLZ3|DNAA_BORDL RecName: Full=Chromosomal replication initiator protein DnaA gi|201083788|gb|ACH93379.1| chromosomal replication initiator protein [Borrelia duttonii Ly] Length = 484 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/470 (27%), Positives = 245/470 (52%), Gaps = 36/470 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++I++++ + ++ ++ + + WF+ L F + + ++ P +F K ++ R+ + I + Sbjct: 5 KNIWSLILAAIRKELSEEEFYIWFENLYFIDAIGENIKIATPNSFHKNQVEKRFSKRIKE 64 Query: 96 LFQEEHSRIQGVEIL------------VRSVALPSVEKTASSPSITKLSPINTN----IS 139 + E+ VE + + ++L ++ T TK I T+ I+ Sbjct: 65 ILIEKGHSTINVEFIHSQNELKDHNTESKDISLKAI--THQQDLQTKNKDIKTHAKNIIN 122 Query: 140 KSPIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + K+ I + +P L ++ F FI G++N++A A+ SIA+ Y NP Sbjct: 123 NTKQYSIKEEIHIKYRNPFLKKKYTFENFIIGTNNKLAYNASLSIAKNPGKKY-----NP 177 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 I+ VGLGKTHLLQ+I N + + +++Y+TAE F+ F +I+ N K R Sbjct: 178 CLIYGGVGLGKTHLLQSIGNKTEELHKEFKILYVTAENFLNEFVESIKTNETKRFKKKYR 237 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ++D+LL+DD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR Sbjct: 238 HLDMLLLDDIHDLQKKEGIQEELFHTFNALYEDNKQMVFTCDRQPSELVNFTDRLKSRFT 297 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A + Sbjct: 298 RGLNVDISKPNFELRVAIIEKKA-----EEDGIKVPKNILNLVAKKVTTNIRDLEAAVTK 352 Query: 378 LVFRHSFAPI-LTAEIADELLSHLV-----NTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 L I + I D+++ ++ NT K+ IE+I++++ + ++ D+ Sbjct: 353 LKAHIDLEDIEIDTNIVDKIIKEIIAYENDNTNTPNKINIENIKKVILRELKLTNKDIEG 412 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 N + + + R + YL + T S EIG+ G + H+TVL+++ K++K Sbjct: 413 NSKKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDK 462 >gi|182437493|ref|YP_001825212.1| chromosomal replication initiation protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|226735850|sp|B1VPF0|DNAA_STRGG RecName: Full=Chromosomal replication initiator protein DnaA gi|178466009|dbj|BAG20529.1| putative replication initiator protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 622 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 210/370 (56%), Gaps = 25/370 (6%) Query: 142 PIILGKQ-TISPVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 P +G Q + +P G P L+ +++F TF+ G+SNR A AA ++AE + Y N Sbjct: 263 PGPMGAQPSPAPGPGEPHARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----N 317 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFI+ GLGKTHLL AI + + P RV Y+++E F F ++IRD + Sbjct: 318 PLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRY 377 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D+LL+DD+QFL K Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R Sbjct: 378 RDVDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF 437 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G++ + + E R +IL+ + Q LN EVL +A ++ + REL+GA Sbjct: 438 EWGLTTDVQPPELETRIAILRKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA-- 490 Query: 377 QLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLL 430 L+ +FA + + + + +L L+ GE I I A ++ ++ +DL Sbjct: 491 -LIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDDLC 549 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 + R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ ++ ++ Sbjct: 550 GSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIY 609 Query: 491 KEV-ELLKRL 499 +V EL R+ Sbjct: 610 NQVTELTNRI 619 >gi|170780463|ref|YP_001708795.1| chromosomal replication initiation protein [Clavibacter michiganensis subsp. sepedonicus] gi|189044633|sp|B0RH69|DNAA_CLAMS RecName: Full=Chromosomal replication initiator protein DnaA gi|169155031|emb|CAQ00127.1| chromosomal replication initiator protein DnaA [Clavibacter michiganensis subsp. sepedonicus] Length = 476 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 147/445 (33%), Positives = 237/445 (53%), Gaps = 28/445 (6%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNR----YLETITKLFQEEHSRIQGVEILVRSVALPSVEK 121 V+ ++L VP + + ++ R L I L +E + + I+V P + + Sbjct: 40 GVMTGTLYLEVPNDLTRGMLEQRIRVPLLNAIGSL--DEAAGVSNFAIVVN----PGIAQ 93 Query: 122 TASS--PSITKLSPINTNISKSPIILGKQTISPVFG-SPLDSRFVFSTFIEGSSNRVALT 178 A + P + I T +P SP G S L+ ++ F TF+ G SNR A Sbjct: 94 DAFAQHPEPAEQPYIETPTITAPTDNPGLPASPSRGDSRLNPKYGFDTFVIGGSNRFAHA 153 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA ++AE + Y NPLFI+ GLGKTHLL AI + +I P +RV Y+++E F Sbjct: 154 AAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIGHYAISLYPGIRVRYVSSEEFT 208 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 F ++I +N + + R+ D+LLIDD+QFLQGK Q F H N+L D KQVV Sbjct: 209 NDFINSIANNRSSLFQSRYRDNDILLIDDIQFLQGKDSTQEAFFHTFNTLHDHNKQVVIT 268 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +D PP L + R+RSR + G+ + D E R +IL+ + +Q E KL + +++L Sbjct: 269 SDLPPKHLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKK---AQSE--KLQVPDDIL 323 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQ 415 ++A VT++ REL+G ++ S P+ A + +L L+ E + DI Sbjct: 324 EYMATKVTSNIRELEGTLIRVTAFASLNKTPVDLA-LVQTVLKDLITLDEDNVIAPVDII 382 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 A ++ ++ +DL + R + V RQ+AMYL + +T S P+IG+ FG+RDHTTV++A Sbjct: 383 NHTAAYFKLTVDDLYGSSRSQAVATARQIAMYLCRELTNLSLPKIGQLFGNRDHTTVMYA 442 Query: 476 VRKVEKMLETDITLKKEV-ELLKRL 499 +K+ ++++ ++ +V EL R+ Sbjct: 443 NKKITELMKERRSIYNQVTELTSRI 467 >gi|326778148|ref|ZP_08237413.1| Chromosomal replication initiator protein dnaA [Streptomyces cf. griseus XylebKG-1] gi|326658481|gb|EGE43327.1| Chromosomal replication initiator protein dnaA [Streptomyces cf. griseus XylebKG-1] Length = 608 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 210/370 (56%), Gaps = 25/370 (6%) Query: 142 PIILGKQ-TISPVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 P +G Q + +P G P L+ +++F TF+ G+SNR A AA ++AE + Y N Sbjct: 249 PGPMGAQPSPAPGPGEPHARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----N 303 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFI+ GLGKTHLL AI + + P RV Y+++E F F ++IRD + Sbjct: 304 PLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRY 363 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D+LL+DD+QFL K Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R Sbjct: 364 RDVDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRF 423 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G++ + + E R +IL+ + Q LN EVL +A ++ + REL+GA Sbjct: 424 EWGLTTDVQPPELETRIAILRKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA-- 476 Query: 377 QLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLL 430 L+ +FA + + + + +L L+ GE I I A ++ ++ +DL Sbjct: 477 -LIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDDLC 535 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 + R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ ++ ++ Sbjct: 536 GSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIY 595 Query: 491 KEV-ELLKRL 499 +V EL R+ Sbjct: 596 NQVTELTNRI 605 >gi|260579561|ref|ZP_05847432.1| replication initiator protein [Corynebacterium jeikeium ATCC 43734] gi|258602332|gb|EEW15638.1| replication initiator protein [Corynebacterium jeikeium ATCC 43734] Length = 583 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/348 (35%), Positives = 199/348 (57%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ GSSN A A +++AE + Y NPLFI GLGKTHLL AI Sbjct: 243 LNKNYTFENFVVGSSNNFAAAACRAVAEAPAKAY-----NPLFIWGESGLGKTHLLHAIG 297 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + QPN+RV Y+++E F ++I ++ + K RN+D+L++DD+QFLQ K Sbjct: 298 HYAKELQPNMRVKYVSSEELTNDFINSIANDTRESFKRRYRNLDMLIVDDIQFLQNKEST 357 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 358 QEEFFHTFNALHQANKQIVLSSDRPPRQLTTLEDRLRTRFEGGLITDVQTPDLETRIAIL 417 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL----VFRHSFAPILTAEI 392 + E + + E+V + +A S RELDGA ++ H + TAEI Sbjct: 418 TKK-----AESDNVQLPEDVKVLIASRYEKSIRELDGALIRVTAYCALSHEPLTVETAEI 472 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L + + ++ + + +VA ++N++ ++L+ R + V+ RQ+AMYL + + Sbjct: 473 A---LRDISPADQDVEIVPQHVIEVVANYFNLTTDELVGKGRAKKFVQARQIAMYLCREL 529 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P++G FG RDHTTV++A R+V + L + + +V+ L + I Sbjct: 530 TDLSLPKLGSAFGGRDHTTVMYAERRVRESLSENKKVFDQVQELTQKI 577 >gi|315654389|ref|ZP_07907297.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 51333] gi|315491424|gb|EFU81041.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 51333] Length = 483 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/352 (35%), Positives = 190/352 (53%), Gaps = 18/352 (5%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 +QT+ + L+ + F +F+ GSSN AA+S+ + Y NPLFI+ G Sbjct: 131 QQTLHIDSSTGLNPTYTFDSFVIGSSNSFTAAAAESVVASPAKAY-----NPLFIYGGPG 185 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL AI N +++ P+ +V Y+++E F F +AI + R +D LLID Sbjct: 186 LGKTHLLHAIGNYALELYPDSKVKYISSEEFTNEFINAIASQTFAEFQARYREVDFLLID 245 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK EF H N+L + KQVV +D P EL+ + R+RSRL+ G+ + Sbjct: 246 DIQFLAGKEQTLEEFFHTFNTLHTAQKQVVITSDVAPKELKGFEERVRSRLEWGLMADIQ 305 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV----FR 381 E R +IL+ + + P ++V +A V + R L+GA ++ Sbjct: 306 PPSLETRIAILRRKAQAGNMQMP-----DDVAEFIASNVDSDIRALEGALIRVTAYWSLN 360 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 H A I TA++A + L+ K++ E I A++++++ DLLS R RTVV P Sbjct: 361 HVPATIETAKLA---IRDLMTGKGAKEITPEMIIDCTAQYFSLTSEDLLSANRSRTVVGP 417 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 RQ+AMYL + +T S P++G FG RDHTTV+HA +KV ++ D K V Sbjct: 418 RQIAMYLCRELTDLSLPQVGAAFGGRDHTTVMHANKKVAASMKEDTQTFKSV 469 >gi|298345816|ref|YP_003718503.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 43063] gi|304390480|ref|ZP_07372433.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657689|ref|ZP_07910571.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235877|gb|ADI67009.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 43063] gi|304326236|gb|EFL93481.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492161|gb|EFU81770.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 483 Score = 197 bits (502), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/352 (35%), Positives = 190/352 (53%), Gaps = 18/352 (5%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 +QT+ + L+ + F +F+ GSSN AA+S+ + Y NPLFI+ G Sbjct: 131 QQTLHIDSNTGLNPTYTFDSFVIGSSNSFTAAAAESVVASPAKAY-----NPLFIYGGPG 185 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL AI N +++ P+ +V Y+++E F F +AI + R +D LLID Sbjct: 186 LGKTHLLHAIGNYALELYPDSKVKYISSEEFTNEFINAIASQTFAEFQARYREVDFLLID 245 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK EF H N+L + KQVV +D P EL+ + R+RSRL+ G+ + Sbjct: 246 DIQFLAGKEQTLEEFFHTFNTLHTAQKQVVITSDVAPKELKGFEERVRSRLEWGLMADIQ 305 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV----FR 381 E R +IL+ + + P ++V +A V + R L+GA ++ Sbjct: 306 PPSLETRIAILRRKAQAGNMQMP-----DDVAEFIASNVDSDIRALEGALIRVTAYWSLN 360 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 H A I TA++A + L+ K++ E I A++++++ DLLS R RTVV P Sbjct: 361 HVPATIETAKLA---IRDLMTGKGAKEITPEMIIDCTAQYFSLTSEDLLSANRSRTVVGP 417 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 RQ+AMYL + +T S P++G FG RDHTTV+HA +KV ++ D K V Sbjct: 418 RQIAMYLCRELTDLSLPQVGAAFGGRDHTTVMHANKKVAASMKEDTQTFKSV 469 >gi|134096621|ref|YP_001102282.1| chromosomal replication initiation protein [Saccharopolyspora erythraea NRRL 2338] gi|291005725|ref|ZP_06563698.1| chromosomal replication initiation protein [Saccharopolyspora erythraea NRRL 2338] gi|133909244|emb|CAL99356.1| chromosomal replication initiator protein DnaA [Saccharopolyspora erythraea NRRL 2338] Length = 592 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 117/337 (34%), Positives = 199/337 (59%), Gaps = 18/337 (5%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L++++ F TF+ G+SNR A AA + AE + Y NPLFI GLGKTH Sbjct: 245 PTSQTRLNAKYTFDTFVIGASNRFAHAAAVAAAEAPARAY-----NPLFIWGESGLGKTH 299 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ + + + P +RV Y++ E F F +++RD+ + + R++D+LL+DD+QFL Sbjct: 300 LLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRQVAFQRRYRDVDVLLVDDIQFL 359 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 +GK Q EF H N+L +S KQ+V ++DRPP L +L+ R+R+R + G+ + + E Sbjct: 360 EGKEGTQEEFFHTFNTLHNSNKQIVVSSDRPPKGLRTLEDRLRTRFEWGLITDIQPPELE 419 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--- 387 R +IL+ + A ++N +VL +A + + REL+GA L+ +FA + Sbjct: 420 TRIAILRKKAAQD-----RMNAPADVLEFIAARIERNIRELEGA---LIRVTAFASLNRQ 471 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + ++A+ +L L+ +T ++ I + A ++++ +DL + + + + RQ+AM Sbjct: 472 PVDVQLAEIVLRDLIPDSQTPEITAPTIMAVTADFFSVTIDDLCGPGKTKALAQARQIAM 531 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 YL + +T S P+IG+ FG RDHTTV+HA +K+ K + Sbjct: 532 YLCRELTDSSLPKIGQSFGGRDHTTVMHADKKIRKEM 568 >gi|302669375|ref|YP_003829335.1| chromosomal replication initiator protein DnaA1 [Butyrivibrio proteoclasticus B316] gi|302393848|gb|ADL32753.1| chromosomal replication initiator protein DnaA1 [Butyrivibrio proteoclasticus B316] Length = 466 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 115/348 (33%), Positives = 201/348 (57%), Gaps = 15/348 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F TF+ GS+N+ A +A+ ++AE Y NPLF++ GLGKTHL+ + Sbjct: 123 SNLNPKYRFDTFVVGSNNKFAHSASLAVAESPGISY-----NPLFLYGGPGLGKTHLMHS 177 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN---LKDSLRNIDLLLIDDMQFLQ 272 I + ++ +V+Y+T+E F +IR A + L++ R +D+L++DD+QF+ Sbjct: 178 IGHFVMEHNRRAKVLYVTSEQFTNEVIESIRSGKAESMSKLREKYRTVDVLMVDDVQFII 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N L + KQ++ ++D+PP E+E+L+ R RSR + G+ + DYE Sbjct: 238 GKESTQEEFFHTFNELHQAGKQIILSSDKPPKEMETLEERFRSRFEMGLIADIQSPDYET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ E+ +I+ EV+ ++A + ++ REL+GA+N+++ + +T Sbjct: 298 RMAILQ-----KNAENYGKHIDAEVINYIATNIKSNIRELEGAYNKIIAYSRLNNVDITL 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A E L ++ ++K + + I V + Y + D+ S +R +V PRQV MYL + Sbjct: 353 ENAMEALKDIIYPDKSKVITPQLIIDTVCEQYGSKKEDIFSKKRNSEIVLPRQVIMYLCR 412 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 T S EIG+ G +DHTTV+ + K++K ++ D L K ++++ + Sbjct: 413 EHTDASLEEIGKLLGKKDHTTVMSGINKIKKQIKIDEELNKNLDIIMK 460 >gi|307746965|gb|ADN90235.1| Chromosomal replication initiator protein dnaA [Campylobacter jejuni subsp. jejuni M1] Length = 440 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 126/462 (27%), Positives = 245/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSAKQSNKSTKI--------DIAH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAIIHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGIIERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|271961610|ref|YP_003335806.1| DNA replication initiation ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270504785|gb|ACZ83063.1| ATPase involved in DNA replication initiation- like protein [Streptosporangium roseum DSM 43021] Length = 582 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 128/353 (36%), Positives = 206/353 (58%), Gaps = 21/353 (5%) Query: 155 GSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G P L+ ++ F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHL Sbjct: 236 GEPARLNPKYTFETFVIGSSNRFAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHL 290 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI + + RV Y+++E F F ++IRD+ A + R +D+LL+DD+QFL+ Sbjct: 291 LHAIGHYAQSLYDGARVRYVSSEEFTNDFINSIRDHKADGFRSRYRAVDILLVDDIQFLE 350 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ+V ++DR P +L +L+ R+R+R + G+ + + E Sbjct: 351 GKEQTQEEFFHTFNTLHNANKQIVISSDRAPKQLVTLEDRLRNRFEWGLITDVQPPELET 410 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 R +IL+ + AI + L EVL ++A ++T+ REL+GA L+ +FA + Sbjct: 411 RIAILRKK-AIQEG----LAAPPEVLEYIASRISTNIRELEGA---LIRVTAFASLNRQS 462 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ + +L L+ ++ + I A ++ +S +DL R R +V RQ+AMY Sbjct: 463 VDLQLTEVVLKDLITEDAGSEITVATIMASTAAYFGLSIDDLCGGSRSRVLVTARQIAMY 522 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 L + +T S P+IG++FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 523 LCRELTDMSLPKIGQQFGGRDHTTVMHADRKIRSLMAERRSIYNQVNELTTRI 575 >gi|288916710|ref|ZP_06411085.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f] gi|288351965|gb|EFC86167.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f] Length = 515 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 128/348 (36%), Positives = 198/348 (56%), Gaps = 19/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R++F TF+ G SNR AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 174 LNPRYLFETFVIGDSNRFPHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 228 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++K P R+ Y++ E F F ++IRD+ L + R+ID+LL+DD+QFL+ K Sbjct: 229 HYTVKLYPESRIKYVSMEEFTNDFIASIRDDRQLAFQRRYRDIDVLLVDDIQFLENKERT 288 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L D+ KQ+V ++DR P +L +L+ R+RSR + G+ + D E R +IL Sbjct: 289 QEEFFHTFNVLHDTEKQIVISSDRSPKQLAALEDRLRSRFEWGLITDVTPPDLETRIAIL 348 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + A +L + +VL ++A + + REL+GA L+ +FA + + + Sbjct: 349 SKKAATE-----RLPVPPDVLEYIATHIERNIRELEGA---LIRVAAFASLNKSHVDRTL 400 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ ++ I A ++ IS +DL R R +V RQ+AMYL + + Sbjct: 401 AEIVLRDLIPDAANPEITAAAIMNATAAYFGISMDDLCGTSRSRVLVTARQIAMYLCREL 460 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 T S P+IG+ FG RDHTTV+HA RK+ ++ + +V EL R+ Sbjct: 461 TDLSLPKIGQHFGGRDHTTVMHADRKIRGLMAERRAIYNQVTELTNRI 508 >gi|121635884|ref|YP_976107.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635911|ref|YP_976134.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988384|ref|YP_002643051.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Tokyo 172] gi|254777908|sp|C1AIZ8|DNAA_MYCBT RecName: Full=Chromosomal replication initiator protein DnaA gi|121491531|emb|CAL69985.1| chromosomal replication initiation protein dnaA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491558|emb|CAL70015.1| Chromosomal replication initiator protein dnaA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771497|dbj|BAH24303.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 507 Score = 197 bits (501), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 146/450 (32%), Positives = 237/450 (52%), Gaps = 42/450 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE--HSRIQGVEILV--- 111 +W ++ +++ LSVP++F++ I+ IT H GV I Sbjct: 46 AWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPAT 105 Query: 112 ----RSVALPSVEKTASSPSITKLSPINTNISKSPIILG--------------KQTISPV 153 + PS +SP T N I S G + T S Sbjct: 106 DEADDTTVPPSENPATTSPDTTT---DNDEIDDSAAARGDNQHSWPSYFTERPRNTDSAT 162 Query: 154 FG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G + L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHL Sbjct: 163 AGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHL 217 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++ Sbjct: 218 LHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIE 277 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E Sbjct: 278 GKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELET 337 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILT 389 R +IL+ + +Q E +L + ++VL +A ++ + REL+GA ++ S PI Sbjct: 338 RIAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDK 392 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL Sbjct: 393 A-LAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLC 451 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 452 RELTDLSLPKIGQAFG-RDHTTVMYAQRKI 480 >gi|148269146|ref|YP_001243606.1| chromosomal replication initiation protein [Thermotoga petrophila RKU-1] gi|166215367|sp|A5IIK7|DNAA_THEP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|147734690|gb|ABQ46030.1| chromosomal replication initiator protein DnaA [Thermotoga petrophila RKU-1] Length = 440 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 147/461 (31%), Positives = 226/461 (49%), Gaps = 45/461 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K +V + WF S+ N V SV F+K W++ +Y ++K Sbjct: 9 IKTRVNRKSWELWFSSFDVRSIEGNKVVFSVGNLFIKEWLEKKYHSVLSK---------- 58 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V++++ + A + A P + P+ + K ++L +PL+ + F Sbjct: 59 AVKVVLGNDATFEITYEAFEPHSSYSEPL---VKKRAVLL----------TPLNPDYTFE 105 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ G N A AA +A+ R NPLFI+ VGLGKTHLLQ+I N ++ +P Sbjct: 106 NFVVGPGNSFAYHAALEVAKHPG------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP 159 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQHEFCHL 283 +LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q E H Sbjct: 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHT 219 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N L DS KQ+V +DR P +L R+ SR Q G+ L D E R SI K L I Sbjct: 220 FNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAKKMLEIE 279 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADELLSHLVN 402 E P EEVL VA V + R L GA + LV++ + + A LL + Sbjct: 280 HGELP-----EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLREAILLLKDFIK 334 Query: 403 TGETKKMR-IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 K M I+++ +VAK +SR ++LSN R + R++ MY++K S I Sbjct: 335 PNRVKAMDPIDELIEIVAKVTGVSREEILSNNRNVKALTARRIGMYVAKNHLNSSLRTIA 394 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +F +R H VL +V++V+ +L K + LK LI E Sbjct: 395 EKF-NRSHPVVLDSVKRVKD------SLLKGNKQLKSLIDE 428 >gi|212691082|ref|ZP_03299210.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855] gi|237712418|ref|ZP_04542899.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 9_1_42FAA] gi|237726609|ref|ZP_04557090.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D4] gi|265752120|ref|ZP_06087913.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_33FAA] gi|212666314|gb|EEB26886.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855] gi|229435135|gb|EEO45212.1| chromosomal replication initiator protein DnaA [Bacteroides dorei 5_1_36/D4] gi|229453739|gb|EEO59460.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 9_1_42FAA] gi|263236912|gb|EEZ22382.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_33FAA] Length = 471 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 132/459 (28%), Positives = 245/459 (53%), Gaps = 26/459 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI-TKLFQEEHSRI 104 +++ V + +WF+ + + + VP+ F +++ ++++ + L++E Sbjct: 20 IRDNVPETTFKTWFEPIVPLKYEDKALTIGVPSPFFYEFLEEKFVDLLRAALYKEIGEGT 79 Query: 105 QGVEILVR------SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP- 157 Q + ++ +V + +++++ P+ T + + N + +P+ Q +P P Sbjct: 80 QLMYCILTDKTNHITVNMEGSKRSSALPTQTVIR--DGNKAPNPM----QAPAPQDLDPH 133 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F FI+G+SN + T +++A+ + + NPLF++ G+GKTHL AI Sbjct: 134 LNPNYNFENFIKGNSNEFSRTVGETVAKNPAKTF-----NPLFLYGPSGVGKTHLTNAIG 188 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLI 276 + P RV+Y++A F ++ ++R N + + ID+L+IDD+Q G Sbjct: 189 TRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIIDDIQEFAGVTKT 248 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L D E+R +IL Sbjct: 249 QNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRFKWGLVAELEKPDVELRKNIL 308 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 +N++ + D LNI E V+ ++A V S REL+G N L+ + F + ++A+ Sbjct: 309 RNKI----RRD-GLNIPETVINYIAENVNESVRELEGIINSLLAQSIIFKRDVDLDLAER 363 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ V E+K + +EDI + V HY I + + + R R VV+ RQVAMYL+K T Sbjct: 364 IVRKAVRCCESKPVTVEDIIQKVCNHYEIEESAIHTKTRKREVVQVRQVAMYLAKKHTDS 423 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S +IG+ G++DH TVLHA + V+ +E D T K ++E Sbjct: 424 SSSKIGQLIGNKDHATVLHACKIVKDQVEVDKTFKADIE 462 >gi|154491703|ref|ZP_02031329.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC 43184] gi|218264325|ref|ZP_03478182.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii DSM 18315] gi|154087944|gb|EDN86989.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC 43184] gi|218222093|gb|EEC94743.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii DSM 18315] Length = 462 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 133/479 (27%), Positives = 258/479 (53%), Gaps = 28/479 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ ++++ + +K+ V + +WF+ + S N + VP+ F +++ +Y+ Sbjct: 1 MQTEYQTLWNKCLAVIKDIVPEAAFNTWFKPIIPLSYEDNKFTIQVPSQFFYEYLEEKYV 60 Query: 91 E----TITKLFQEE---HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 T+ ++ + + RI+ V+ V+ + ++ +P K S ++ +S Sbjct: 61 NVLKVTLYRVIGQGTILNYRIKVVD-KVKEDGMITLPTGNDAPRTGKKSADIPSLFESK- 118 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 +Q + S L+ ++ F + EG+SNR+ +++++IA+ G T NP+F+ Sbjct: 119 --ARQD----WDSHLNPKYNFDNYFEGTSNRLVRSSSEAIAQ--EPGKT---FNPMFVFG 167 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + G+GKTHL AI N + P +V+Y++A F ++ AIR N + + +D+L Sbjct: 168 ASGVGKTHLCHAIGNRIQEIHPEKKVLYISAHLFTVQYTEAIRKNTTNDFMYFYQGVDVL 227 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 ++DD+Q L GK Q+ F H+ N L KQ++ +D+ P +L+ ++ R+ +RL+ G++ Sbjct: 228 ILDDIQELIGKDKTQNTFFHIFNHLHLLGKQLILTSDKAPVDLQGMEERLITRLKWGLTA 287 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FR 381 L D ++R ILKN+++ + I ++V +A VT + R+++G L+ + Sbjct: 288 ELDRPDLDLRKKILKNKIS-----HDGVVIPDDVFNFIASNVTENVRDVEGIVASLLAYS 342 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +F ++ + +++S +V E K++ +E IQ +V K+YN+ + +N R R +V+ Sbjct: 343 TAFNRMIDLPLTKQVVSRVVKL-EKKQVSVESIQDVVCKYYNLELAAIQTNSRKREIVQA 401 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQV MYL+K T SF IG+ G RDH TVLHA + V +ET+ + + VE ++ L+ Sbjct: 402 RQVTMYLAKKYTDSSFSHIGKIVGKRDHATVLHACKTVRDQIETNKSFRSSVEEIEALL 460 >gi|305432571|ref|ZP_07401732.1| ATPase [Campylobacter coli JV20] gi|304444282|gb|EFM36934.1| ATPase [Campylobacter coli JV20] Length = 440 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 127/462 (27%), Positives = 247/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ + + + P L +I+ +Y + I+ ++ + Sbjct: 10 LKKELSENEYENYIAILKFNEKQSKADFLVFNAPNELLAKFIQTKYGKKISHFYEVQSGN 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 V I +S +K +S + ++ I + TI L+ F Sbjct: 70 KASVLIQAQS------QKHSSKSTKIDIAHIK----------AQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I++ D G NP+FI+ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAISQKDKLGKL---YNPIFIYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYANILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + IEDI ++ K +NI +D+ S+++ + VV R++A+YL++ +T +F Sbjct: 333 KDHIKEKKENISIEDILSLICKEFNIKPSDVKSSKKTQNVVTARRIAIYLARELTSLTFS 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H+V+K+++++E D +K ++E LK I Sbjct: 393 QLANFFVMKDHTAISHSVKKIKELMEDDEQIKTKIEELKNKI 434 >gi|323342257|ref|ZP_08082489.1| replication initiation protein DnaA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463369|gb|EFY08563.1| replication initiation protein DnaA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 471 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 124/360 (34%), Positives = 200/360 (55%), Gaps = 27/360 (7%) Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P+++ I+P F F+ G SN+ + +AA A YT PLFI Sbjct: 123 PVVIRNDGIAP--------NQTFDNFVVGPSNKESHSAALGCAYRPGQFYT-----PLFI 169 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + + GLGKTHLL AI N K P+ RV+Y ++ F+ + A++I++ + K+ + N+D Sbjct: 170 YGNSGLGKTHLLNAIGNYIKKLNPDARVLYTSSSDFVRQVANSIQNRTIEDFKEQMYNLD 229 Query: 262 LLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QFL GK HE F H+ N L+ + KQ+V +DR P+E++ L+ R+ SR G+ Sbjct: 230 VLLIDDIQFLAGKEKSHEIFFHIFNELIYNKKQIVITSDRLPTEIKGLEDRLISRFSSGL 289 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKE-DPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 SV + ++E +IL+ L I K DP L +E+VL ++A + R L+GA N+L+ Sbjct: 290 SVGVDSPEFETSLAILE--LKIKHKSVDPGL-FDEDVLSYIASNFSKDVRMLEGALNRLL 346 Query: 380 F---RHSFAPILTAEIADELLSHLVNTGE---TKKMRIEDIQRMVAKHYNISRNDLLSNR 433 F S + IA ++ GE T ++ + I+R+VA +Y +++ L+S Sbjct: 347 FFSIEFSQNDHIDINIA---MNAFKTNGEPIKTNELDTKTIKRIVADYYGLTQAQLVSKA 403 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R + + R +A+YL + + +IG FG RDH+T++ A K+EK L+TD L + V Sbjct: 404 RTKAIANARHIAIYLCRKHLDLPYNKIGEDFGKRDHSTIISACDKIEKKLKTDQMLARAV 463 >gi|296167143|ref|ZP_06849550.1| DNA-directed DNA replication initiator protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897465|gb|EFG77064.1| DNA-directed DNA replication initiator protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 518 Score = 197 bits (500), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/328 (37%), Positives = 199/328 (60%), Gaps = 15/328 (4%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL Sbjct: 176 GTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLH 230 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++GK Sbjct: 231 AAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGK 290 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 291 EGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRI 350 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAE 391 +IL+ + +Q E +L + ++VL +A ++ + REL+GA ++ S PI A Sbjct: 351 AILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKA- 404 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL + Sbjct: 405 LAEIVLRDLIADASTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRE 464 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 465 LTDLSLPKIGQAFG-RDHTTVMYAQRKI 491 >gi|167752111|ref|ZP_02424238.1| hypothetical protein ALIPUT_00353 [Alistipes putredinis DSM 17216] gi|167660352|gb|EDS04482.1| hypothetical protein ALIPUT_00353 [Alistipes putredinis DSM 17216] Length = 469 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 143/477 (29%), Positives = 255/477 (53%), Gaps = 29/477 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 CE T + ++K++ + + WF+ + + L VP I+ Y+ + Sbjct: 9 CEKWQTCLD-QIKSRTTEEEFVKWFKPIVPLEFDGKTLRLCVPNMSYVYQIEKHYIPFLR 67 Query: 95 KLFQEEHSRIQGVEILVRSVALPS-------VEKTASSPSITKLSP-INTNISKSPIIL- 145 + S++ G EI + A+P V K A + +I++ S NT K+P ++ Sbjct: 68 PII----SQLYGQEIRLH-YAVPKNDAQSVPVSKEADTTAISQFSTQTNTANIKNPFVIP 122 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 G + I V L+ + F+TFIEG NR+A +A ++A VD G+T NPL+I+ + Sbjct: 123 GLKKI--VIDPQLNPNYTFATFIEGECNRLARSAGMAVA-VDP-GHTP--FNPLYIYGNS 176 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTH++Q+I + +R P L+V+Y++ F +F +A ++ + + ID+L+I Sbjct: 177 GLGKTHIVQSIGHEVRQRHPELQVLYVSMNKFQAQFQTAYKNGEIPDFIHFYQMIDVLII 236 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q L GK Q+ F ++ N L + KQ++ +D+PP EL+ ++ R+ +R + G+S L Sbjct: 237 DDIQELTGKTGTQNAFFNIFNHLQLAGKQLILTSDKPPVELKDIEQRLLTRFKWGLSTQL 296 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 DY+ + I++ + +QK L + +E++ ++A ++ + RE++GA + LV + Sbjct: 297 NTPDYDTKVKIIRIK---AQKLG--LQLTDEIVRYLADNISANVREIEGALSALVANTVY 351 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 ++ + E+L V + K++ IE I +V +I L S R R V + RQ Sbjct: 352 MGKKVSLSLVKEILKVYVRVCQ-KEITIEHIIEVVCDFLHIDIQRLNSPERTREVAQARQ 410 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +AMYL+K T IG G R+H TVLH+ + V +ETD ++++E L++L+ Sbjct: 411 IAMYLAKQHTKSPLIAIGSAIGGRNHATVLHSCKAVSNQIETDKAFQRQMEELEKLV 467 >gi|157165209|ref|YP_001465925.1| chromosomal replication initiation protein [Campylobacter concisus 13826] gi|166201870|sp|A7ZAW7|DNAA_CAMC1 RecName: Full=Chromosomal replication initiator protein DnaA gi|112801714|gb|EAT99058.1| chromosomal replication initiator protein DnaA [Campylobacter concisus 13826] Length = 436 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 131/449 (29%), Positives = 235/449 (52%), Gaps = 48/449 (10%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 L+ ++ + + + ++LKF+ N + + + + +IK RY E I L++ Sbjct: 10 LQTKISANEFDCYIKQLKFNEKASNEDFIVFNATSELMAKFIKTRYAEKIAYLYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 V++ P VE T+ TKL I N I + +I L+ + Sbjct: 65 -------VKTGKKPEVEITSQ----TKLKNIKQNQVNVKQIKAQSSI-------LNPGYT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G SN+ A A+++A D G V NPLFI+ + GLGKTHLLQ++ N + + Sbjct: 107 FENFVCGDSNQFAFLNAKAVA--DKPG---VLYNPLFIYGTTGLGKTHLLQSVGNYCLDQ 161 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 V+ +T++ FM F + + + ++ RN D+LLIDD+QFL GK IQ EF Sbjct: 162 GK--VVICVTSDQFMIDFTTHLNSHSMTKFREKYRNCDVLLIDDVQFL-GKTDKIQEEFF 218 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N L+ Q+V +DRP L+ D R++SR + + + + + + +I+ Sbjct: 219 NTFNELIAKKGQIVMTSDRPAKILKGFDERLKSRFEQSIMADITPPELDTKIAII----- 273 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL----TAEIADELL 397 I + E K+ +N+EV+ ++A + + RE++GA L +++A ++ T E A L Sbjct: 274 IKKCEFDKIYLNKEVIDYIATNMGDNIREIEGAIINL---NAYASLMRVEITLEFAKNTL 330 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 L+ + + + +E I +V+K NI +D+ S RV+ +V R++ +YL+K++T S Sbjct: 331 KDLIKE-KHENINLETIIEIVSKELNIKPSDIKSKSRVQNIVEARRIIIYLAKMLTTNSM 389 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 P+I FG +DH+ V H ++K+ +++E++ Sbjct: 390 PQIANYFGMKDHSAVSHNIKKINELMESN 418 >gi|19551251|ref|NP_599253.1| chromosomal replication initiation protein [Corynebacterium glutamicum ATCC 13032] gi|62388893|ref|YP_224295.1| chromosomal replication initiation protein [Corynebacterium glutamicum ATCC 13032] gi|38257663|sp|Q8NUD8|DNAA_CORGL RecName: Full=Chromosomal replication initiator protein DnaA gi|21322765|dbj|BAB97394.1| ATPase involved in DNA replication initiation [Corynebacterium glutamicum ATCC 13032] gi|41324226|emb|CAF18566.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 524 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 118/348 (33%), Positives = 198/348 (56%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F +F+ G NR A AA ++AE + + NPLFI GLGKTHLL A+ Sbjct: 184 LNPKYTFESFVIGPFNRFANAAAVAVAESPAKAF-----NPLFISGGSGLGKTHLLHAVG 238 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + QP LR+ Y+++E F + +++RD+ K RN+D+L++DD+QFL GK Sbjct: 239 NYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQETFKRRYRNLDILMVDDIQFLAGKEGT 298 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 299 QEEFFHTFNALHQADKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 358 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + + +++ EVL +A +S REL+GA L+ +++ ++ I E+ Sbjct: 359 -----MKKAQTDGTHVDREVLELIASRFESSIRELEGA---LIRVSAYSSLINQPIDKEM 410 Query: 397 ----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L ++ E ++ I + A+++ IS + L + R V RQ+AMYL + + Sbjct: 411 AIVALRDILPEPEDMEITAPVIMEVTAEYFEISVDTLRGAGKTRAVAHARQLAMYLCREL 470 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG FG +DHTTV++A RK+ + + E++ L +LI Sbjct: 471 TDMSLPKIGDVFGGKDHTTVMYADRKIRQEMTEKRDTYDEIQQLTQLI 518 >gi|57504597|ref|ZP_00370709.1| chromosomal replication initiator protein DnaA [Campylobacter coli RM2228] gi|57019492|gb|EAL56186.1| chromosomal replication initiator protein DnaA [Campylobacter coli RM2228] Length = 440 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 127/462 (27%), Positives = 247/462 (53%), Gaps = 44/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ + + + P L +I+ +Y + I+ ++ + Sbjct: 10 LKKELSENEYENYIAILKFNEKQSKADFLVFNAPNELLAKFIQTKYSKKISHFYEVQSGN 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 V I +S +K +S + ++ I + TI L+ F Sbjct: 70 KASVLIQAQS------QKHSSKSTKIDIAHIK----------AQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I++ D G NP+FI+ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAISQKDKLGKL---YNPIFIYGLTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 FND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYANILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + IEDI ++ K +NI +D+ S+++ + VV R++A+YL++ +T +F Sbjct: 333 KDHIKEKKENISIEDILSLICKEFNIKPSDVKSSKKTQNVVTARRIAIYLARELTSLTFS 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H+V+K+++++E D +K ++E LK I Sbjct: 393 QLANFFVMKDHTAISHSVKKIKELMEDDEQIKTKIEELKNKI 434 >gi|145294043|ref|YP_001136864.1| chromosomal replication initiation protein [Corynebacterium glutamicum R] gi|166201881|sp|A4Q9R9|DNAA_CORGB RecName: Full=Chromosomal replication initiator protein DnaA gi|140843963|dbj|BAF52962.1| hypothetical protein [Corynebacterium glutamicum R] Length = 524 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 118/348 (33%), Positives = 198/348 (56%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F +F+ G NR A AA ++AE + + NPLFI GLGKTHLL A+ Sbjct: 184 LNPKYTFESFVIGPFNRFANAAAVAVAESPAKAF-----NPLFISGGSGLGKTHLLHAVG 238 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + QP LR+ Y+++E F + +++RD+ K RN+D+L++DD+QFL GK Sbjct: 239 NYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQETFKRRYRNLDILMVDDIQFLAGKEGT 298 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 299 QEEFFHTFNALHQADKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 358 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + + +++ EVL +A +S REL+GA L+ +++ ++ I E+ Sbjct: 359 -----MKKAQTDGTHVDREVLELIASRFESSIRELEGA---LIRVSAYSSLINQPIDKEM 410 Query: 397 ----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L ++ E ++ I + A+++ IS + L + R V RQ+AMYL + + Sbjct: 411 AIVALRDILPEPEDMEITAPVIMEVTAEYFEISVDTLRGAGKTRAVAHARQLAMYLCREL 470 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG FG +DHTTV++A RK+ + + E++ L +LI Sbjct: 471 TDMSLPKIGDVFGGKDHTTVMYADRKIRQEMTEKRDTYDEIQQLTQLI 518 >gi|148271179|ref|YP_001220740.1| chromosomal replication initiation protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166201875|sp|A5CLT3|DNAA_CLAM3 RecName: Full=Chromosomal replication initiator protein DnaA gi|147829109|emb|CAN00006.1| chromosomal replication initiator protein dnaA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 477 Score = 196 bits (499), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 148/446 (33%), Positives = 237/446 (53%), Gaps = 29/446 (6%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNR----YLETITKLFQEEHSRIQGVEILVRSVALPSVEK 121 V+ ++L VP + + ++ R L I L +E + + I+V P + + Sbjct: 40 GVMTGTLYLEVPNDLTRGMLEQRIRVPLLNAIGSL--DEAAGVSNFAIVVN----PEIAQ 93 Query: 122 TASS--PSITKLSP-INTNISKSPIILGKQTISPVFG-SPLDSRFVFSTFIEGSSNRVAL 177 A + P P I T +P SP G S L+ ++ F TF+ G SNR A Sbjct: 94 DAFAQHPEPAAEQPYIETPTITAPTDNPGLPASPSRGDSRLNPKYGFDTFVIGGSNRFAH 153 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AA ++AE + Y NPLFI+ GLGKTHLL AI + +I P +RV Y+++E F Sbjct: 154 AAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIGHYAISLYPGIRVRYVSSEEF 208 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 F ++I +N + + R+ D+LLIDD+QFLQGK Q F H N+L D KQVV Sbjct: 209 TNDFINSIANNRSSLFQSRYRDNDILLIDDIQFLQGKDSTQEAFFHTFNTLHDHNKQVVI 268 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 +D PP L + R+RSR + G+ + D E R +IL+ + +Q E KL + +++ Sbjct: 269 TSDLPPKHLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKK---AQSE--KLQVPDDI 323 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDI 414 L ++A VT++ REL+G ++ S P+ A + +L L+ E + DI Sbjct: 324 LEYMATKVTSNIRELEGTLIRVTAFASLNKTPVDLA-LVQTVLKDLITLDEDNVIAPVDI 382 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 A ++ ++ +DL + R + V RQ+AMYL + +T S P+IG+ FG+RDHTTV++ Sbjct: 383 INHTAAYFKLTVDDLYGSSRSQAVATARQIAMYLCRELTNLSLPKIGQLFGNRDHTTVMY 442 Query: 475 AVRKVEKMLETDITLKKEV-ELLKRL 499 A +K+ ++++ ++ +V EL R+ Sbjct: 443 ANKKITELMKERRSIYNQVTELTSRI 468 >gi|311897307|dbj|BAJ29715.1| putative chromosomal replication initiator protein DnaA [Kitasatospora setae KM-6054] Length = 629 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 131/353 (37%), Positives = 207/353 (58%), Gaps = 22/353 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLF++ GLGKTHLL AI Sbjct: 290 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFVYGESGLGKTHLLHAIG 344 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + S P RV Y+++E F F ++IRD A + R+ID+LL+DD+QFL K Sbjct: 345 HYSRSLFPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDIDILLVDDIQFLASKEST 404 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 405 QEEFFHTFNTLHNANKQIVLSSDRPPKQLITLEDRLRNRFEWGLITDVTPPELETRIAIL 464 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA----EI 392 + + AI + +LN +VL +A +T + REL+GA L+ +FA + A E+ Sbjct: 465 RKK-AIQE----QLNAPADVLEFIASRITRNIRELEGA---LIRVTAFANLNRAPVDLEL 516 Query: 393 ADELLSHLVNTGE---TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +L L+ G+ ++ + I + A ++ + DL + R R +V RQ+AMYL Sbjct: 517 AGIVLKDLIPGGDEDAGPEITAQVIMQQTAAYFGLGVEDLCGSSRSRVLVTARQIAMYLC 576 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRLIS 501 + +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ S Sbjct: 577 RELTDLSLPKIGAQFGGRDHTTVMHADRKIRSLMAERRSIYNQVTELTNRIKS 629 >gi|157362871|ref|YP_001469638.1| chromosomal replication initiation protein [Thermotoga lettingae TMO] gi|167016906|sp|A8F346|DNAA_THELT RecName: Full=Chromosomal replication initiator protein DnaA gi|157313475|gb|ABV32574.1| chromosomal replication initiator protein DnaA [Thermotoga lettingae TMO] Length = 444 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 134/460 (29%), Positives = 236/460 (51%), Gaps = 36/460 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LK+++ V+ SWF + + V V F++ W++ +Y I+K +E + Sbjct: 9 LKSKLNRRVWESWFGTFDVKEIGPDYVVFQVGNLFIREWLEKKYGSLISKTLRELFGK-- 66 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++ + + + EK S+ P+ + K P+IL +PL+ F Sbjct: 67 PMDFRIEHASAKTEEKLDSNED----EPL---VKKRPLIL----------TPLNPILTFE 109 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ G +N A + +A+ + NPLF+H VGLGKTHLLQAI + K +P Sbjct: 110 NFVVGPNNMFAYSTCLEVAK------NPGKYNPLFLHGGVGLGKTHLLQAIGHYLFKHEP 163 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGKL-IQHEFCHL 283 ++RV+YLT+E F+ +I+ N +D RN ID+LL+DD+QFL GK IQ E H Sbjct: 164 DMRVIYLTSERFLNELVDSIKKNRVQEFRDKFRNKIDVLLLDDVQFLIGKTGIQTELFHT 223 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N L + KQ+V +DR P +LE R+ SR Q GV + D E F I + ++ Sbjct: 224 FNELYNEGKQIVVCSDRDPQQLEKFQDRLVSRFQMGVVTKIEKPDEETCFKIAQK---MA 280 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVN 402 Q E+ +L E++L +++ + + R L GA +L+ ++ + + A ELL+ + N Sbjct: 281 QLENAEL--QEDILKLISKNFSDNLRRLRGALVKLIMYQQISGEKVDLQKAFELLA-IQN 337 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + K + E + + + + +S+ ++LS R + V RQ+ MY+++ S ++ Sbjct: 338 SYHNKSLPEEKLMNSICEIFGVSQEEILSKSRKKEVALARQIGMYVARNYMGFSLRKVAD 397 Query: 463 RFGDRDHTTVLHAVRKVEKMLET-DITLKKEVELLKRLIS 501 F R H TV H ++K+E++ + ++ +K +++ L R ++ Sbjct: 398 MF-KRSHPTVSHTIQKLEELTNSGNMVIKSQIDRLARCVT 436 >gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Rv] gi|15839373|ref|NP_334410.1| chromosomal replication initiation protein [Mycobacterium tuberculosis CDC1551] gi|148659758|ref|YP_001281281.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] gi|148821192|ref|YP_001285946.1| chromosomal replication initiation protein [Mycobacterium tuberculosis F11] gi|167969464|ref|ZP_02551741.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] gi|215405983|ref|ZP_03418164.1| chromosomal replication initiation protein [Mycobacterium tuberculosis 02_1987] gi|215413853|ref|ZP_03422518.1| chromosomal replication initiation protein [Mycobacterium tuberculosis 94_M4241A] gi|215425187|ref|ZP_03423106.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T92] gi|215432906|ref|ZP_03430825.1| chromosomal replication initiation protein [Mycobacterium tuberculosis EAS054] gi|215448272|ref|ZP_03435024.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T85] gi|218755717|ref|ZP_03534513.1| chromosomal replication initiation protein [Mycobacterium tuberculosis GM 1503] gi|219555772|ref|ZP_03534848.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T17] gi|253796916|ref|YP_003029917.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 1435] gi|254366461|ref|ZP_04982505.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis str. Haarlem] gi|254548929|ref|ZP_05139376.1| chromosomal replication initiation protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184854|ref|ZP_05762328.1| chromosomal replication initiation protein [Mycobacterium tuberculosis CPHL_A] gi|260198985|ref|ZP_05766476.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T46] gi|260203138|ref|ZP_05770629.1| chromosomal replication initiation protein [Mycobacterium tuberculosis K85] gi|289441368|ref|ZP_06431112.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis T46] gi|289445526|ref|ZP_06435270.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CPHL_A] gi|289552251|ref|ZP_06441461.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 605] gi|289567883|ref|ZP_06448110.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T17] gi|289572577|ref|ZP_06452804.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis K85] gi|289747769|ref|ZP_06507147.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis 02_1987] gi|289748463|ref|ZP_06507841.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T92] gi|289756060|ref|ZP_06515438.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis EAS054] gi|289760098|ref|ZP_06519476.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289764116|ref|ZP_06523494.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis GM 1503] gi|294995607|ref|ZP_06801298.1| chromosomal replication initiation protein [Mycobacterium tuberculosis 210] gi|297632469|ref|ZP_06950249.1| chromosomal replication initiation protein [Mycobacterium tuberculosis KZN 4207] gi|297729438|ref|ZP_06958556.1| chromosomal replication initiation protein [Mycobacterium tuberculosis KZN R506] gi|298527397|ref|ZP_07014806.1| dnaA [Mycobacterium tuberculosis 94_M4241A] gi|306795595|ref|ZP_07433897.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu006] gi|306801570|ref|ZP_07438238.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu008] gi|306805779|ref|ZP_07442447.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu007] gi|307086727|ref|ZP_07495840.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu012] gi|313656767|ref|ZP_07813647.1| chromosomal replication initiation protein [Mycobacterium tuberculosis KZN V2475] gi|3123213|sp|P49993|DNAA_MYCTU RecName: Full=Chromosomal replication initiator protein DnaA gi|166214683|sp|A5TY69|DNAA_MYCTA RecName: Full=Chromosomal replication initiator protein DnaA gi|1321904|emb|CAA63257.1| dnaA [Mycobacterium tuberculosis H37Rv] gi|2808711|emb|CAA16238.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycobacterium tuberculosis H37Rv] gi|13879042|gb|AAK44224.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CDC1551] gi|134151973|gb|EBA44018.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis str. Haarlem] gi|148503910|gb|ABQ71719.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] gi|148719719|gb|ABR04344.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis F11] gi|253318419|gb|ACT23022.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 1435] gi|289414287|gb|EFD11527.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis T46] gi|289418484|gb|EFD15685.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CPHL_A] gi|289436883|gb|EFD19376.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 605] gi|289537008|gb|EFD41586.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis K85] gi|289541636|gb|EFD45285.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T17] gi|289688297|gb|EFD55785.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis 02_1987] gi|289689050|gb|EFD56479.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T92] gi|289696647|gb|EFD64076.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis EAS054] gi|289711622|gb|EFD75638.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis GM 1503] gi|289715662|gb|EFD79674.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298497191|gb|EFI32485.1| dnaA [Mycobacterium tuberculosis 94_M4241A] gi|308343891|gb|EFP32742.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu006] gi|308347675|gb|EFP36526.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu007] gi|308351593|gb|EFP40444.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu008] gi|308363877|gb|EFP52728.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu012] gi|323717340|gb|EGB26545.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis CDC1551A] gi|326905758|gb|EGE52691.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis W-148] gi|328456707|gb|AEB02130.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 4207] Length = 507 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 146/450 (32%), Positives = 236/450 (52%), Gaps = 42/450 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE--HSRIQGVEILV--- 111 +W ++ +++ LSVP++F++ I+ IT H GV I Sbjct: 46 AWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPAT 105 Query: 112 ----RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--------------TISPV 153 + PS +SP T N I S G T S Sbjct: 106 DEADDTTVPPSENPATTSPDTTT---DNDEIDDSAAARGDNQHSWPSYFTERPHNTDSAT 162 Query: 154 FG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G + L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHL Sbjct: 163 AGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHL 217 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++ Sbjct: 218 LHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIE 277 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E Sbjct: 278 GKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELET 337 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILT 389 R +IL+ + +Q E +L + ++VL +A ++ + REL+GA ++ S PI Sbjct: 338 RIAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDK 392 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL Sbjct: 393 A-LAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLC 451 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 452 RELTDLSLPKIGQAFG-RDHTTVMYAQRKI 480 >gi|261414415|ref|YP_003248098.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370871|gb|ACX73616.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326676|gb|ADL25877.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 441 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 117/350 (33%), Positives = 202/350 (57%), Gaps = 14/350 (4%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PL F F F+ G ++A AA ++A + G + NPLFI+ S GLGKTHLLQ+I Sbjct: 102 PLSGSFRFENFVPGDKAQLAFNAALAVAR-NPDG---TQYNPLFIYGSSGLGKTHLLQSI 157 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGKL 275 N ++ P RV+YLT+E F ++ +++ + D RN +D+LLIDD+Q GK Sbjct: 158 GNYILEEDPTKRVIYLTSEDFSQQYMKCLQEKRITEMSDFYRNEVDILLIDDIQNWTGKY 217 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q+EF + N+L + KQ+V +D P +E+++L R+ SR G++V + D E R + Sbjct: 218 ETQNEFFLIFNALHQAGKQIVLTSDAPAAEVKNLSDRLVSRFSWGLTVDIQPPDVETREA 277 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + E+ L I++EV+ ++A + ++ R L+ A +L + S + + IA Sbjct: 278 ILHKK-----AEERHLEISDEVIRYLAENIASNVRCLESAIIKLTLQSSLMSHDIDMNIA 332 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS-NRRVRTVVRPRQVAMYLSKIM 452 ++++ + T +++ ++ + V++HY + L+ R + + + RQVAM+L + + Sbjct: 333 QKVVTEIAPTLR-RRVSLDAVLHAVSQHYEVPETKLIEPGRGTKEISKARQVAMFLMREL 391 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +P S IG RFG +DH+TV+HA++ V+K +ETD + + +E LK I + Sbjct: 392 SPISLQSIGSRFGGKDHSTVVHAIKSVKKEMETDPSFARLIESLKNTIHD 441 >gi|319936678|ref|ZP_08011091.1| chromosomal replication initiator protein dnaA [Coprobacillus sp. 29_1] gi|319808235|gb|EFW04800.1| chromosomal replication initiator protein dnaA [Coprobacillus sp. 29_1] Length = 444 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 114/353 (32%), Positives = 197/353 (55%), Gaps = 16/353 (4%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F L+S F F+ G+SNR+A A+ ++A Y+ PLFIH++ GLGKTHL Sbjct: 96 LFNDNLNSDLKFENFVVGNSNRIAQNASLAVAMKPGISYS-----PLFIHSNSGLGKTHL 150 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + + P +V++ T+E F+ + ++ ++ R+ID+LLIDD+QF+ Sbjct: 151 LNAIGNYAKSKDPFTKVLFTTSENFVNEYIQSLSNHTIDEFNYKYRHIDILLIDDIQFMA 210 Query: 273 GKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K E F ++ NSL+ + KQ+V +D+PP +L ++ R+ SR G++V + ++E Sbjct: 211 TKESSSEIFFNIFNSLISNKKQIVITSDKPPRDLRGMESRLVSRFASGLTVSIDTPEFET 270 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA----PI 387 +IL+ ++ I + P I EEVL +A T REL+G+ +L+F Sbjct: 271 SKAILRKKIEIENVDYP---ITEEVLDFIASHFNTDVRELEGSLKRLLFYKLICEEKRDC 327 Query: 388 LTAEIADELLSHLVNTG--ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + A E S + K++ + +I++ VA +YN++ + + S R ++ R ++ Sbjct: 328 IDLNFALEAFSDTYKNQPIQKKELTVSNIKKCVADYYNLTVSQINSKSRTSNIIVARHIS 387 Query: 446 MYLSK-IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 MYL + ++ SF +IG FG RDH+TV+ A KV+K LE D+ ++ ++ +K Sbjct: 388 MYLVRELIKDISFIQIGHEFGGRDHSTVMKACDKVQKKLEKDLNYRQAIDDIK 440 >gi|328477669|gb|EGF47698.1| chromosomal replication initiation protein [Lactobacillus rhamnosus MTCC 5462] Length = 299 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 110/287 (38%), Positives = 171/287 (59%), Gaps = 13/287 (4%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI+ VGLGKTHL+QAI N ++ P + Y+T+E F F ++I+ + Sbjct: 17 NPLFIYGGVGLGKTHLMQAIGNLVLENNPAANIKYVTSENFANDFINSIQTKQQEQFRQE 76 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 RN+DLLL+DD+QF K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR Sbjct: 77 YRNVDLLLVDDIQFFGDKEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSR 136 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 G+SV + D E R +IL+N+ + ED L+I ++ L ++A + ++ R+L+GA Sbjct: 137 FNKGLSVDVTPPDLETRIAILRNK---ANAED--LSIPDDTLSYIAGQIESNVRDLEGA- 190 Query: 376 NQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 LV +F+ + +T +A + L L + ++ I I VAK++ ++ DL Sbjct: 191 --LVRVQAFSTMKNEDITTSLAADALKALKLDDRSGQLTIPQILDAVAKYFQVTVQDLKG 248 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 +RV+ +V PRQ+AMYL++ MT S P+IG+ G +DHTTV+HA K Sbjct: 249 KKRVKQIVIPRQIAMYLAREMTDNSLPKIGQEIGGKDHTTVIHAHEK 295 >gi|61212967|sp|Q6MEG8|DNAA2_PARUW RecName: Full=Chromosomal replication initiator protein DnaA 2 Length = 448 Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 131/468 (27%), Positives = 236/468 (50%), Gaps = 31/468 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++++T +K + P + +W ++ V L +P F++ ++ + Y + + Sbjct: 7 QNVWTQFLQFVKTRCSPAAFGNWLAPIRVIDCSTEEVTLEIPNIFVQEYLLSNYKKDLCA 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + S P++ + P + P + +IS S K+ SP Sbjct: 67 FLPVDMS------------GEPAIRFIIAPPQKKIIPPNHFSISSSQ----KEEQSPNSD 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L++ + F FIEG +N+ +AA +A Y NPLFIH VGLGKTH+L + Sbjct: 111 VKLNNNYRFENFIEGPTNQFVKSAAMGVALRPGQSY-----NPLFIHGGVGLGKTHILHS 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGK 274 I + + LRV +T E F+ ++R+ +K R+ ID+LL+DD+QFLQ + Sbjct: 166 IGHYIKENHKKLRVQCITTEAFINDLVDSLRNKSVDRMKKFYRSEIDVLLVDDIQFLQNR 225 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 L + E + +L + Q+V +D+PPS L+ L R +++GG+ +G+ + E R Sbjct: 226 LNFEEELSYTFEALKNKGAQIVITSDKPPSLLK-LSERTIGKMEGGLVAHMGIPELETRV 284 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL+ + E L+I +V +A + + R+L+GA N+L + +T E+ Sbjct: 285 AILQYK-----AEQKGLHIPHKVAFFIAEHIHNNVRQLEGAINRLSAHCRLLDLNITEEL 339 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L ++ +K+ +E I + VA + + +DL + R + + PRQVAMYL+K M Sbjct: 340 VSRTLREMLQQAPREKISVEQILKSVAAVFQVRVSDLRGSTRTKDIALPRQVAMYLAKEM 399 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S +G FG + H+T+LHA + +EK + +D TL++++ +++R I Sbjct: 400 INESLIMLGASFG-KTHSTILHACKNIEKKVASDETLRRQIGMVRRNI 446 >gi|300781938|ref|YP_003762229.1| chromosomal replication initiator protein DnaA [Amycolatopsis mediterranei U32] gi|299791452|gb|ADJ41827.1| chromosomal replication initiator protein DnaA [Amycolatopsis mediterranei U32] Length = 547 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 117/329 (35%), Positives = 195/329 (59%), Gaps = 14/329 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A AA ++AE + Y NPLFI GLGKTHLL A+ Sbjct: 207 LNEKYTFDTFVIGASNRFAHAAAVAVAEAPARAY-----NPLFIWGESGLGKTHLLHAVG 261 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + P +RV Y++ E F F +++RD+ + + R+ID+LL+DD+QFL+GK Sbjct: 262 HYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGT 321 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP LE+L+ R+R+R + G+ + + E R +IL Sbjct: 322 QEEFFHTFNTLHNANKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDIQPPELETRIAIL 381 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + + A +L + EVL +A V + REL+GA ++ S P+ +A +A+ Sbjct: 382 RKKAAQD-----RLAVPGEVLEFIASRVEANIRELEGALIRVTAFASLNQQPVDSA-LAE 435 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L L+ ++ I + ++ ++++ +DL + + + RQ+AMYL + +T Sbjct: 436 IVLRDLIPDSHAPEITAPTIMGVTSEFFDVTLDDLCGPGKTKALATARQIAMYLCRELTD 495 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 S P+IG+ FG RDHTTV+HA +K+ K + Sbjct: 496 MSLPKIGQTFGGRDHTTVMHADKKIRKEM 524 >gi|88854499|ref|ZP_01129166.1| chromosomal replication initiator protein [marine actinobacterium PHSC20C1] gi|88816307|gb|EAR26162.1| chromosomal replication initiator protein [marine actinobacterium PHSC20C1] Length = 471 Score = 196 bits (498), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 145/444 (32%), Positives = 232/444 (52%), Gaps = 31/444 (6%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRY----LETITKLFQEEHSRIQGVEILVRSVALPSVEK 121 V+ ++L VP + ++ R L+ I L E G+ +V P +++ Sbjct: 40 GVMAGTLYLEVPNELTRGMLEQRLRQPLLDAIGSLSGE-----HGINNFA-TVVNPDIQQ 93 Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 A S I + I +P +Q+ S L+ ++ F F+ G SNR A AA Sbjct: 94 DALSQEIPRAE--QPYIEPTPPTPIEQSPPRRSDSRLNPKYSFDNFVIGGSNRFAHAAAV 151 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 ++AE + Y NPLFI+ GLGKTHLL AI + + P +RV Y+++E F F Sbjct: 152 AVAEAPAKAY-----NPLFIYGGSGLGKTHLLHAIGHYAESLYPGIRVRYVSSEEFTNDF 206 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 ++I +N A + R ID+LLIDD+QFLQGK Q F H N+L D KQVV +D Sbjct: 207 INSIANNRASVFQSRYREIDILLIDDIQFLQGKDSTQEAFFHTFNTLHDHNKQVVITSDL 266 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PP L + R+RSR + G+ + D E R +IL+ + +Q E K+ + ++L + Sbjct: 267 PPKHLTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKK---AQSE--KMQVGNDILEFM 321 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVNTGETKKMRIEDIQR 416 A V+++ REL+G L+ +FA + E+ +L L+ E + DI Sbjct: 322 ASKVSSNIRELEGT---LIRVTAFASLNRTEVDMALVQTVLKDLITLDEDNVIAPVDIIN 378 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 A ++ ++ +DL + R + V RQ+AMYL + MT S P+IG+ FG+RDHTTV++A Sbjct: 379 HTADYFKLTVDDLYGSSRSQAVATARQIAMYLCREMTNLSLPKIGQLFGNRDHTTVMYAN 438 Query: 477 RKVEKMLETDITLKKEV-ELLKRL 499 +K+ ++++ ++ +V EL R+ Sbjct: 439 KKITELMKERRSIYNQVTELTSRI 462 >gi|283953664|ref|ZP_06371195.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 414] gi|283794705|gb|EFC33443.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 414] Length = 432 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/452 (27%), Positives = 241/452 (53%), Gaps = 44/452 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK ++ + Y ++ LKF+ L +++ + P + +I+ +Y + I ++ Sbjct: 10 LKKELSENEYENYLSNLKFNEKLSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +Q + ++ S +++ S I +I+ I + TI L+ F Sbjct: 65 VQSGNKAIINIQAQSQKQSNKSTKI--------DITH---IKAQSTI-------LNPSFT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 107 FESFVVGDSNKYAYGACKAIIHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLEM 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 164 GK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEFF 220 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 221 FIFNEIKNNDGQIIMTSDNPPNILKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCE 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 ++ +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL ++ Sbjct: 281 LND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSVM 332 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T + P Sbjct: 333 KDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARTLTALTMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 ++ F +DHT + H V+K+ +M+E D +LK Sbjct: 393 QLANYFEMKDHTAISHNVKKITEMIENDTSLK 424 >gi|333029142|ref|ZP_08457203.1| Chromosomal replication initiator protein dnaA [Bacteroides coprosuis DSM 18011] gi|332739739|gb|EGJ70221.1| Chromosomal replication initiator protein dnaA [Bacteroides coprosuis DSM 18011] Length = 470 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 137/470 (29%), Positives = 247/470 (52%), Gaps = 34/470 (7%) Query: 46 LKNQVGPDVYASWFQR---LKFHSVLHNIVHLSVPTNFLKAWIKNRYLE----TITKLFQ 98 +++ V Y +WF LKF + + VP+ F +++ ++++ T+ ++ Sbjct: 17 IRDNVAESTYNTWFAPIIPLKFED---KTLVIQVPSQFFYEFLEEKFVDLLRHTLYQVIG 73 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITK--LSPI--NTNISKSPIILGKQTISPVF 154 E + V + + A ++E + S ++ K +SP T I ++P Q + P Sbjct: 74 EGAKLMYNVMVDRSASATVNLEASNRSTAVRKNNISPAAPRTRIPQAPQAPAIQELDP-- 131 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ + F TFIEG+SN+++ + A+++AE + TV NPLFIH + G+GKTHL Sbjct: 132 --RLNPDYTFETFIEGNSNKLSRSVAEAVAE---NPAKTV-FNPLFIHGNSGVGKTHLAN 185 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI +R P RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q G Sbjct: 186 AIGLRIKERYPEKRVLYVSAHLFQIQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAGV 245 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 + Q+ F H+ N L + KQ++ +D PP L+ ++ R+ +R + G+ L E+R Sbjct: 246 VKTQNTFFHIFNHLHQNGKQLILTSDLPPVLLQGMEDRLLTRFKWGMVAELERPSVELRK 305 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA 393 IL+N++ L+ EV+ ++A V S R+L+G ++ + + I EI Sbjct: 306 DILRNKI-----HRDGLDFPTEVITYIAENVDDSVRDLEGIVISIM---AHSTIYNKEID 357 Query: 394 DELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +L +V E K + I++I V ++ I + S R R VV+ R AM+L+K Sbjct: 358 LDLAQRIVKKVVRSEKKVITIDNILTAVTDYFKIEPKQIHSRSRKREVVQARHFAMFLAK 417 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ G+R+H+TVLHA + V+ E D + + ++E ++ L+ Sbjct: 418 KYTEYSTPKIGKFIGNRNHSTVLHACKTVKHQCEVDKSYRADMEAVQELL 467 >gi|308232614|ref|ZP_07416626.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu001] gi|308369280|ref|ZP_07417156.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu002] gi|308371505|ref|ZP_07425168.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu003] gi|308371555|ref|ZP_07425297.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu004] gi|308372785|ref|ZP_07429832.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu005] gi|308378519|ref|ZP_07482837.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu009] gi|308379669|ref|ZP_07487069.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu010] gi|308380868|ref|ZP_07491286.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu011] gi|308213439|gb|EFO72838.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu001] gi|308328156|gb|EFP17007.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu002] gi|308328618|gb|EFP17469.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu003] gi|308336273|gb|EFP25124.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu004] gi|308339879|gb|EFP28730.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu005] gi|308352300|gb|EFP41151.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu009] gi|308356303|gb|EFP45154.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu010] gi|308360190|gb|EFP49041.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu011] Length = 496 Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 146/450 (32%), Positives = 236/450 (52%), Gaps = 42/450 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE--HSRIQGVEILV--- 111 +W ++ +++ LSVP++F++ I+ IT H GV I Sbjct: 35 AWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPAT 94 Query: 112 ----RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--------------TISPV 153 + PS +SP T N I S G T S Sbjct: 95 DEADDTTVPPSENPATTSPDTTT---DNDEIDDSAAARGDNQHSWPSYFTERPHNTDSAT 151 Query: 154 FG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G + L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHL Sbjct: 152 AGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHL 206 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++ Sbjct: 207 LHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIE 266 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E Sbjct: 267 GKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELET 326 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILT 389 R +IL+ + +Q E +L + ++VL +A ++ + REL+GA ++ S PI Sbjct: 327 RIAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDK 381 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A+ +L L+ T ++ I A++++ + +L + R + + RQ+AMYL Sbjct: 382 A-LAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLC 440 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 441 RELTDLSLPKIGQAFG-RDHTTVMYAQRKI 469 >gi|328883703|emb|CCA56942.1| Chromosomal replication initiator protein DnaA [Streptomyces venezuelae ATCC 10712] Length = 591 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/350 (36%), Positives = 200/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 252 LNPKYLFDTFVIGSSNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 306 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 307 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKEST 366 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 367 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIAIL 426 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 427 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 478 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ DL + R R +V RQ+AMYL + Sbjct: 479 TEIVLKDLIPGGEDSSPEITAPAIMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCR 538 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 539 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 588 >gi|320009750|gb|ADW04600.1| chromosomal replication initiator protein DnaA [Streptomyces flavogriseus ATCC 33331] Length = 580 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 207/367 (56%), Gaps = 25/367 (6%) Query: 145 LGKQTISPVF-GSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +G Q+ P G P L+ +++F TF+ G+SNR A AA ++AE + Y NPLF Sbjct: 224 MGNQSAPPPGTGEPHARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLF 278 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ GLGKTHLL AI + + P RV Y+++E F F ++IRD + R++ Sbjct: 279 IYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDV 338 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LL+DD+QFL K Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G Sbjct: 339 DILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG 398 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++ + + E R +IL+ + Q LN EVL +A ++ + REL+GA L+ Sbjct: 399 LTTDVQPPELETRIAILRKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LI 450 Query: 380 FRHSFAPI----LTAEIADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNR 433 +FA + + + + +L L+ GE I I A ++ ++ DL + Sbjct: 451 RVTAFASLNRQPVDLGLTEIVLKDLIPGGEDSAPEITAPAIMAATADYFGLTVEDLCGSS 510 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V Sbjct: 511 RSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQV 570 Query: 494 -ELLKRL 499 EL R+ Sbjct: 571 TELTNRI 577 >gi|242310227|ref|ZP_04809382.1| chromosomal replication initiator protein dnaA [Helicobacter pullorum MIT 98-5489] gi|239523524|gb|EEQ63390.1| chromosomal replication initiator protein dnaA [Helicobacter pullorum MIT 98-5489] Length = 430 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/462 (27%), Positives = 239/462 (51%), Gaps = 45/462 (9%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +LK ++ P + ++ +L F+ + + + P + +WIK +Y I +LF+ ++ Sbjct: 7 QLKKEITPFEFDNYINQLHFNEKYSRDDRIIFNAPNAIIASWIKTKYASKIAQLFEMQN- 65 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 G + P + +P+ K + NT ++ + L+ Sbjct: 66 ---GFK--------PEIIIEVFNPNKKKDNKHNTKKIQN-------------ATNLNPSL 101 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++FI G+SN A A+++A+ S Y NPL I+ + GLGKTHLL AI NA++ Sbjct: 102 TFNSFIVGNSNSFAFNVAKAVAQNQSTIY-----NPLMIYGNTGLGKTHLLNAIGNANVN 156 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 + V+Y T+E F+ + IR+N ++ R D LLIDD+QFL GK IQ EF Sbjct: 157 VGKS--VIYTTSEQFLNDYLLHIRNNTMDRFREKYRACDYLLIDDIQFLSGKNQIQEEFF 214 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L + KQ+V +DRPP ++ L+ R+++R G+ + + E + +I+ + Sbjct: 215 HTFNELKKNNKQIVLTSDRPPKNMDGLEERLKTRFTSGLLADIQPPELETKINIINAKCE 274 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAEIADELLSH 399 + +++ +V+ +A + + RE++G +L F + + +T + ++L Sbjct: 275 LD-----GIHLTPQVIDFIAANINDNIREIEGVLVKLNFSINVTNVQEVTIDFVRDILKE 329 Query: 400 LVNTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + ETK+ + +++I +V+K+YNI +D+ S R + +V R++ +YL++ +TP S P Sbjct: 330 YI--KETKENIDMDEIIEIVSKYYNIKPSDIRSKSRSKNIVTARKIVIYLARTLTPNSMP 387 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + FG +DH+TV A++ +++ + + K +E LK I Sbjct: 388 SLANYFGMKDHSTVSKAMKSIQEEINKNPNFKTIIEELKNKI 429 >gi|203287879|ref|YP_002222894.1| chromosomal replication initiator protein [Borrelia recurrentis A1] gi|226735784|sp|B5RRN9|DNAA_BORRA RecName: Full=Chromosomal replication initiator protein DnaA gi|201085099|gb|ACH94673.1| chromosomal replication initiator protein [Borrelia recurrentis A1] Length = 484 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/468 (27%), Positives = 242/468 (51%), Gaps = 32/468 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++I++++ + ++ ++ + + WF+ L F + + ++ P +F K ++ R+ + I + Sbjct: 5 KNIWSLILAAIRKELSEEEFYIWFENLYFIDAIGENIKIATPNSFHKNQVEKRFSKRIKE 64 Query: 96 LFQEEHSRIQGVEIL----------VRSVALPSVEKTASSPSITKLSPINTN----ISKS 141 + E+ VE + S +P T TK I T+ I+ + Sbjct: 65 ILIEKGHSTINVEFIHSQNELKDHNTESKDIPLKAITHQQDLQTKNKDIKTHAKNIINNT 124 Query: 142 PIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 K+ I + +P L ++ F FI G++N++A A+ SIA+ Y NP Sbjct: 125 KQYSIKEEIHIKYRNPFLKKKYTFENFIIGTNNKLAYNASLSIAKNPGKKY-----NPCL 179 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHLLQ+I N + + +++Y+TAE F+ F +I+ N K R++ Sbjct: 180 IYGGVGLGKTHLLQSIGNKTEELHKEFKILYVTAENFLNEFVESIKTNETKRFKKKYRHL 239 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LL+DD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR G Sbjct: 240 DMLLLDDIHDLQKKEGIQEELFHTFNALYEDNKQMVFTCDRQPSELVNFTDRLKSRFTRG 299 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A +L Sbjct: 300 LNVDISKPNFELRVAIIEKKA-----EEDGIKVPKNILNLVAKKVTTNIRDLEAAVTKLK 354 Query: 380 FRHSFAPI-LTAEIADELLSHLV-----NTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 I + I D+++ ++ +T K+ IE+I++++ + ++ D+ N Sbjct: 355 AHIDLEDIEIDTNIVDKIIKEIIAYENDHTNTPNKINIENIKKVILRELKLTNKDIEGNS 414 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 + + + R + YL + T S EIG+ G + H+TVL+++ K++K Sbjct: 415 KKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDK 462 >gi|294775360|ref|ZP_06740882.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus PC510] gi|319642816|ref|ZP_07997454.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_40A] gi|294450817|gb|EFG19295.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus PC510] gi|317385560|gb|EFV66501.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_40A] Length = 468 Score = 196 bits (497), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 244/459 (53%), Gaps = 26/459 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI-TKLFQEEHSRI 104 +++ V + +WF+ + + + VP+ F +++ ++++ + L++E Sbjct: 17 IRDNVPETTFKTWFEPIVPLKYEDKALTIGVPSPFFYEFLEEKFVDLLRAALYKEIGEGT 76 Query: 105 QGVEILVR------SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP- 157 Q + ++ +V + +++++ P+ T + + N + +P+ Q +P P Sbjct: 77 QLMYCILTDKTNHITVNMEGSKRSSALPTQTVIR--DGNKAPNPM----QAPAPQDLDPH 130 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F FI+G+SN + T +++A+ + + NPLF++ G+GKTHL AI Sbjct: 131 LNPNYNFENFIKGNSNEFSRTVGETVAKNPAKTF-----NPLFLYGPSGVGKTHLTNAIG 185 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLI 276 + P RV+Y++A F ++ ++R N + + ID+L+IDD+Q G Sbjct: 186 TRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIIDDIQEFAGVTKT 245 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L D E+R +IL Sbjct: 246 QNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRFKWGLVAELEKPDVELRKNIL 305 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 +N++ + D LNI E V+ ++A V S REL+G N L+ + F + ++A+ Sbjct: 306 RNKI----RRD-GLNIPETVINYIAENVNESVRELEGIINSLLAQSIIFKRDVDLDLAER 360 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ V E+K + +EDI + V HY I + + + R R VV+ RQVAMYL+K T Sbjct: 361 IVRKAVRCCESKPVTVEDIIQKVCSHYEIEESAIHTKTRKREVVQVRQVAMYLAKKHTDS 420 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S +IG+ G++DH TVLHA + V+ +E D K ++E Sbjct: 421 SSSKIGKLIGNKDHATVLHACKIVKDQVEVDKAFKADIE 459 >gi|558140|gb|AAA85913.1| putative [Synechocystis sp.] Length = 446 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 140/461 (30%), Positives = 231/461 (50%), Gaps = 46/461 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+CE+++ + L Q+ + +W + S+ + + V F + N ++ Sbjct: 2 VSCENLWQQALAILATQLTKPAFDTWIKASVLISLGDGVATIQVENGF----VLNHLQKS 57 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 L E + + G EI V+ + L P + ++G+++ P Sbjct: 58 YGPLLMEVLTDLTGQEITVKLIT-------------DGLEPHS--------LIGQESSLP 96 Query: 153 VFGSP-----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + +P L+ ++ FS F+ + A S+A +S G NPLF+ VGL Sbjct: 97 METTPKNATALNGKYTFSRFVWAHQSH---GHAASLAVAESPGR---EFNPLFLCGGVGL 150 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAIA+ ++ PN +V Y++ E F +AIR + + + R+ D LLIDD Sbjct: 151 GKTHLMQAIAHYRLEMYPNAKVYYVSTERFTNDLITAIRQDNMEDFRSYYRSADFLLIDD 210 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK Q EF H NSL ++ KQVV A+DR P + L R+ SR G+ + + Sbjct: 211 IQFIKGKEYTQEEFFHTFNSLHEAGKQVVVASDRAPQRIPGLQDRLISRFSMGLIADIQV 270 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ + E ++ + +EV+ ++A T++ REL+GA + + S + Sbjct: 271 PDLETRMAILQKK-----AEYDRIRLPKEVMEYIASHYTSNIRELEGALIRAIAYTSLSN 325 Query: 387 I-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +T E +L+ V E E I +VA+HY + +LLSN R R V RQV Sbjct: 326 VAMTVENIAPVLNPPV---EKVAAAPETIITIVAQHYQLKVEELLSNSRRREVSLARQVG 382 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 MYL + T S P IG FG +DHTTV+++ K+ ++ + D Sbjct: 383 MYLMRQHTDLSLPRIGEAFGGKDHTTVMYSCDKITQLQQKD 423 >gi|332968623|gb|EGK07677.1| DNA-directed DNA replication initiator protein DnaA [Kingella kingae ATCC 23330] Length = 599 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 192/346 (55%), Gaps = 13/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG N++A A+SIAE NP F++ + GLGKTHL+QAI Sbjct: 262 LSPDYTFDTLVEGKGNQLAAQVAKSIAEKPGDSM----YNPFFVYGATGLGKTHLVQAIG 317 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N I+ P RV Y+ ++ ++ F + +R+ K + +LL+IDD+QF+ GK Sbjct: 318 NQLIRLNPKARVRYMHSDEYIKTFMATVRNKTWDTFKQQYLHYNLLIIDDIQFIAGKDRT 377 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF L + +Q++ D+ PS LE++D R+ SR G+++ L + EMR +IL Sbjct: 378 MEEFFFLFEHFHNRDQQIILTCDQLPSSLENMDKRLVSRFSWGMTIRLEPPELEMRINIL 437 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP--ILTAEIAD 394 + + + +++ E + +A+ V S R+L+GA N+++ R F ++ ++A Sbjct: 438 ERK-----AQAMNISLEENAALFIAQNVKASVRDLEGALNRVIARCRFEKRNVIDIDLAT 492 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L +V K + ++ I + VA +Y I +DLL +R R + RPRQ+AM L+K +T Sbjct: 493 DTLRDIV-ASNYKPITVDLIMKTVADYYRIKISDLLGKKRTRNIARPRQMAMALAKELTT 551 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+HAVR + + ++ L ++ E L LI Sbjct: 552 LSLPAIGDAFGGRDHTTVMHAVRTIATLRVEEMELGQDYEKLLILI 597 >gi|150002609|ref|YP_001297353.1| chromosomal replication initiation protein [Bacteroides vulgatus ATCC 8482] gi|254881428|ref|ZP_05254138.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_3_47FAA] gi|149931033|gb|ABR37731.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus ATCC 8482] gi|254834221|gb|EET14530.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_3_47FAA] Length = 471 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/459 (28%), Positives = 244/459 (53%), Gaps = 26/459 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI-TKLFQEEHSRI 104 +++ V + +WF+ + + + VP+ F +++ ++++ + L++E Sbjct: 20 IRDNVPETTFKTWFEPIVPLKYEDKALTIGVPSPFFYEFLEEKFVDLLRAALYKEIGEGT 79 Query: 105 QGVEILVR------SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP- 157 Q + ++ +V + +++++ P+ T + + N + +P+ Q +P P Sbjct: 80 QLMYCILTDKTNHITVNMEGSKRSSALPTQTVIR--DGNKAPNPM----QAPAPQDLDPH 133 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F FI+G+SN + T +++A+ + + NPLF++ G+GKTHL AI Sbjct: 134 LNPNYNFENFIKGNSNEFSRTVGETVAKNPAKTF-----NPLFLYGPSGVGKTHLTNAIG 188 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLI 276 + P RV+Y++A F ++ ++R N + + ID+L+IDD+Q G Sbjct: 189 TRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIIDDIQEFAGVTKT 248 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L D E+R +IL Sbjct: 249 QNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRFKWGLVAELEKPDVELRKNIL 308 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 +N++ + D LNI E V+ ++A V S REL+G N L+ + F + ++A+ Sbjct: 309 RNKI----RRD-GLNIPETVINYIAENVNESVRELEGIINSLLAQSIIFKRDVDLDLAER 363 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ V E+K + +EDI + V HY I + + + R R VV+ RQVAMYL+K T Sbjct: 364 IVRKAVRCCESKPVTVEDIIQKVCSHYEIEESAIHTKTRKREVVQVRQVAMYLAKKHTDS 423 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S +IG+ G++DH TVLHA + V+ +E D K ++E Sbjct: 424 SSSKIGKLIGNKDHATVLHACKIVKDQVEVDKAFKADIE 462 >gi|302531358|ref|ZP_07283700.1| chromosomal replication initiator protein DnaA [Streptomyces sp. AA4] gi|302440253|gb|EFL12069.1| chromosomal replication initiator protein DnaA [Streptomyces sp. AA4] Length = 585 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 196/331 (59%), Gaps = 18/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A AA ++AE + Y NPLFI GLGKTHLL A+ Sbjct: 245 LNEKYNFDTFVIGASNRFAHAAAVAVAEAPARAY-----NPLFIWGESGLGKTHLLHAVG 299 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + P +RV Y++ E F F +++RD+ + + R+ID+LL+DD+QFL+GK Sbjct: 300 HYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGT 359 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP LE+L+ R+R+R + G+ + + E R +IL Sbjct: 360 QEEFFHTFNTLHNANKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDIQPPELETRIAIL 419 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + A +L + EVL +A V + REL+GA L+ +FA + + + Sbjct: 420 RKKAAQD-----RLAVPGEVLEFIASRVEANIRELEGA---LIRVTAFASLNQQPVEVGL 471 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ T ++ I + A+ ++++ ++L + + + RQ+AMYL + + Sbjct: 472 AEIVLRDLIPDSHTPEITAPTIMGVTAEFFDVTLDELCGPGKTKALATARQIAMYLCREL 531 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG+ FG RDHTTV+HA +K+ K + Sbjct: 532 TEMSLPKIGQTFGGRDHTTVMHADKKIRKEM 562 >gi|11132615|sp|Q9ZH75|DNAA_STRCH RecName: Full=Chromosomal replication initiator protein DnaA gi|3800785|gb|AAD08807.1| DNA replication initiator protein [Streptomyces anulatus] Length = 624 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 201/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 285 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 339 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 340 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKEST 399 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 400 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIAIL 459 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 460 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 511 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 512 TEIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDDLCGSSRTRVLVTARQIAMYLCR 571 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 572 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 621 >gi|297193296|ref|ZP_06910694.1| chromosomal replication initiator protein dnaA [Streptomyces pristinaespiralis ATCC 25486] gi|297151727|gb|EDY62296.2| chromosomal replication initiator protein dnaA [Streptomyces pristinaespiralis ATCC 25486] Length = 611 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 200/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 272 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 326 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 327 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKEST 386 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 387 QEEFFHTFNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAIL 446 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 447 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 498 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ DL + R R +V RQ+AMYL + Sbjct: 499 TEIVLKDLIPGGEDAAPEITASAIMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCR 558 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 559 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 608 >gi|25026557|ref|NP_736611.1| chromosomal replication initiation protein [Corynebacterium efficiens YS-314] gi|38257617|sp|Q8FUL7|DNAA_COREF RecName: Full=Chromosomal replication initiator protein DnaA gi|23491836|dbj|BAC16811.1| putative chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] Length = 573 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/348 (33%), Positives = 198/348 (56%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F+ G NR A AA ++AE + + NPLFI GLGKTHLL A+ Sbjct: 233 LNPKYTFENFVIGPFNRFANAAAVAVAESPAKAF-----NPLFISGGSGLGKTHLLHAVG 287 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + QP LR+ Y+++E F + +++RD+ + K RN+D+L++DD+QFL GK Sbjct: 288 NYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRNLDILMVDDIQFLAGKEGT 347 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 348 QEEFFHTFNALHQAEKQIILSSDRPPRQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 407 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + + +++ EVL +A +S REL+GA L+ +++ ++ I E+ Sbjct: 408 -----MKKAQADGTHVDREVLELIASRFESSIRELEGA---LIRVSAYSSLINQPIDKEM 459 Query: 397 ----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L ++ E ++ I + A+++ IS + L + R V RQ+AMYL + + Sbjct: 460 AIVALRDILPEPEDMEITAPVIMEVTAEYFKISVDTLRGAGKTRAVAHARQLAMYLCREL 519 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG FG +DHTTV++A RK+ + + E++ L +LI Sbjct: 520 TDMSLPKIGDVFGGKDHTTVMYADRKIRQEMTEKRDTYDEIQQLTQLI 567 >gi|311742163|ref|ZP_07715973.1| DNA-directed DNA replication initiator protein [Aeromicrobium marinum DSM 15272] gi|311314656|gb|EFQ84563.1| DNA-directed DNA replication initiator protein [Aeromicrobium marinum DSM 15272] Length = 491 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/345 (36%), Positives = 189/345 (54%), Gaps = 13/345 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R++F F+ GSSNR A AA + AE Y NPL IH GLGKTHLL AI Sbjct: 150 LNPRYLFENFVIGSSNRFAHAAAVAAAEAPGKAY-----NPLVIHGESGLGKTHLLHAIG 204 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P+ RV Y+ E F +AI + LK R ID+LL+DD+QF++GK Sbjct: 205 HYVLGLYPSSRVRYVNTEEFTNDVINAIGERRTGALKRKYREIDVLLVDDIQFIEGKEAT 264 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ+V +DRPP L++L+ R+R+R + G++ + + E R +IL Sbjct: 265 QEEFFHTFNALHNENKQIVMTSDRPPKNLKTLEERLRNRFEWGLTTDVTPPELETRIAIL 324 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF-NQLVFRHSFAPILTAEIADE 395 + + + L + +VL +A V ++ REL+GA F + + +A Sbjct: 325 RKKAS-----SDGLTVPADVLEFIASKVQSNIRELEGALIRATAFANLQGTTVDLNLAQI 379 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L LV G ++ I I A + + +L S R R +V RQ+AMYL + +T Sbjct: 380 VLKDLVAEGGEPEVTIGLILAQTAAYSEFTIEELCSGNRTRDLVLARQIAMYLCRELTEM 439 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 S P+IG+ FG RDHTTV+HA RK+ K+++ + +V EL R+ Sbjct: 440 SLPKIGQEFGGRDHTTVMHAERKIGKLMKEKHAVYNQVTELTSRI 484 >gi|259508311|ref|ZP_05751211.1| chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] gi|259164129|gb|EEW48683.1| chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] Length = 566 Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 118/348 (33%), Positives = 198/348 (56%), Gaps = 18/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F F+ G NR A AA ++AE + + NPLFI GLGKTHLL A+ Sbjct: 226 LNPKYTFENFVIGPFNRFANAAAVAVAESPAKAF-----NPLFISGGSGLGKTHLLHAVG 280 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + QP LR+ Y+++E F + +++RD+ + K RN+D+L++DD+QFL GK Sbjct: 281 NYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRNLDILMVDDIQFLAGKEGT 340 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 341 QEEFFHTFNALHQAEKQIILSSDRPPRQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 400 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + + +++ EVL +A +S REL+GA L+ +++ ++ I E+ Sbjct: 401 -----MKKAQADGTHVDREVLELIASRFESSIRELEGA---LIRVSAYSSLINQPIDKEM 452 Query: 397 ----LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L ++ E ++ I + A+++ IS + L + R V RQ+AMYL + + Sbjct: 453 AIVALRDILPEPEDMEITAPVIMEVTAEYFKISVDTLRGAGKTRAVAHARQLAMYLCREL 512 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG FG +DHTTV++A RK+ + + E++ L +LI Sbjct: 513 TDMSLPKIGDVFGGKDHTTVMYADRKIRQEMTEKRDTYDEIQQLTQLI 560 >gi|291446132|ref|ZP_06585522.1| chromosomal replication initiator protein dnaA [Streptomyces roseosporus NRRL 15998] gi|291349079|gb|EFE75983.1| chromosomal replication initiator protein dnaA [Streptomyces roseosporus NRRL 15998] Length = 625 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 201/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 286 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 340 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 341 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKEST 400 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 401 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIAIL 460 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 461 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 512 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 513 TEIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDDLCGSSRSRVLVTARQIAMYLCR 572 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 573 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 622 >gi|218244895|ref|YP_002370266.1| chromosomal replication initiation protein [Cyanothece sp. PCC 8801] gi|226735800|sp|B7JYF1|DNAA_CYAP8 RecName: Full=Chromosomal replication initiator protein DnaA gi|218165373|gb|ACK64110.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 8801] Length = 453 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 136/470 (28%), Positives = 239/470 (50%), Gaps = 43/470 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + ++ V RL+ ++ + +W Q N + + V +F I N Sbjct: 1 MNISPQYLWNQVLERLQIRLTRPAFETWIQDATVQEWKDNCLVIQVANSF----ILNHLQ 56 Query: 91 ETITKLFQEEHSRIQGVEILVR-------SVALPSVEKTASSPSITKLSPINTNISKSPI 143 +T + +E + + G + ++ ++A+ ++ S+T+++P + +++ Sbjct: 57 KTYQPIIAQEVASVVGYPVDIQLTTAEGETMAMTGEAQSYQEKSLTQIAPESPKLNQ--- 113 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 L+ R+ FS F+ G +NR+A A+ ++AE + NPLF+ Sbjct: 114 --------------LNPRYTFSRFVVGPTNRMAHAASLAVAESPGREF-----NPLFLCG 154 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+QAIA+ ++ PN +V Y++ E F +AIR + ++ R D L Sbjct: 155 GVGLGKTHLMQAIAHYRLELYPNAKVFYVSTEQFTNDLIAAIRQDSMERFREHYRRADFL 214 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF++GK Q E H N+L ++ KQVV A+DR P + +L R+ SR G+ Sbjct: 215 LIDDIQFIEGKEYTQEELFHTFNTLHEAGKQVVLASDRAPKRIPTLQDRLISRFSMGLIA 274 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + + D E R +IL+ + +Q E+ + + +V+ ++A T++ REL+GA + + Sbjct: 275 DIQVPDLETRMAILQKK---AQYEN--MRLPRDVVEYIATNYTSNIRELEGALIRAIAYT 329 Query: 383 SFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 S + + +T + +L+ V E E I R VA+ +S DL + R R + Sbjct: 330 SISGLSMTVQNIAPVLNPPV---EQVPASPEVILRTVAESLKVSIEDLKGSSRRREISFA 386 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 RQV MYL + T S P IG FG +DHTTVL++ K+ K+ + D L + Sbjct: 387 RQVGMYLMRQHTELSLPRIGEEFGGKDHTTVLYSCDKISKLQQKDWELSQ 436 >gi|228470045|ref|ZP_04054956.1| chromosomal replication initiator protein DnaA [Porphyromonas uenonis 60-3] gi|228308319|gb|EEK17168.1| chromosomal replication initiator protein DnaA [Porphyromonas uenonis 60-3] Length = 475 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 133/472 (28%), Positives = 237/472 (50%), Gaps = 32/472 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ + P+VY +WF +K S++ + L VP+ F +I+ ++ + ++ Q RI Sbjct: 18 LQAMIQPEVYNAWFPHIKPVSLIGVEMTLGVPSQFFCEYIETHFINELKQVLQ----RII 73 Query: 106 GVEILVR---------------SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 G ++++ SV LP+ + AS+ + + +P + + Sbjct: 74 GPNVVLKYKALVDSAASHRKNSSVTLPT-QSYASNAYGAASAYAISASGAAPALKSEPRQ 132 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P F S L + F+++ +G SNR A + A+SIAE G LNP FI+ G+GKT Sbjct: 133 LPDFDSQLKPQLSFASYYQGESNRTASSIARSIAEKPGQG----ALNPCFIYGPSGVGKT 188 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ- 269 HL AI + P L+V+Y+++ F ++ +A R N + + + +D+LLIDD+Q Sbjct: 189 HLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVLLIDDIQG 248 Query: 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q F + N L KQ+V +D P L L+ R+ SR+ G +++ + DY Sbjct: 249 LIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTIEVERPDY 308 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 ++R L+++ E+ + E++ ++ARTVT+S R L G F L+ R + + Sbjct: 309 DLRKEYLRHK-----SEESGSILPREMIDYIARTVTSSIRGLQGVFFSLITRAAVEGCDI 363 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T+ +++S V E K++ + I++ V +++++ + S R V + RQ+ MY Sbjct: 364 TSSFVKKIVSQTVKQ-EKKEITVSMIEKTVCEYFHVPTELVRSRSRKADVAQARQLIMYF 422 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K T +S IG G R H TVLH+ + VE E + ++ ++ LI Sbjct: 423 AKRYTDQSLSAIGELLGGRSHATVLHSCKVVEDQAEVSTAFRSDLNAIESLI 474 >gi|257054090|ref|YP_003131922.1| chromosomal replication initiation protein [Saccharomonospora viridis DSM 43017] gi|256583962|gb|ACU95095.1| chromosomal replication initiator protein DnaA [Saccharomonospora viridis DSM 43017] gi|260600338|gb|ACX47006.1| chromosomal replication initiator protein DnaA [Saccharomonospora viridis] Length = 597 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/332 (36%), Positives = 197/332 (59%), Gaps = 19/332 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A AA ++AE S Y NPLF+ GLGKTHLL A+ Sbjct: 256 LNEKYTFDTFVIGASNRFAHAAAVAVAEAPSRAY-----NPLFVWGESGLGKTHLLHAVG 310 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + P +RV Y++ E F F +++RD+ + + R+ID+LL+DD+QFL+GK Sbjct: 311 HYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDILLVDDIQFLEGKEGT 370 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP LE+L+ R+R+R + G+ + + E R +IL Sbjct: 371 QEEFFHTFNTLHNANKQIVVSSDRPPKRLETLEERLRTRFEWGLITDIQPPELETRIAIL 430 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + A +D +L + EVL +A V + REL+GA L+ +FA + + + Sbjct: 431 RKKAA----QD-RLAVPGEVLEFIAARVEANIRELEGA---LIRVTAFASLNQQPVDVGL 482 Query: 393 ADELLSHLVNT-GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A+ +L L+ T + ++ I + A+ ++++ DL + + + RQ+AMYL + Sbjct: 483 AEVVLRDLMPTDSQAPEISASMIMNVTAEFFDVTVEDLCGPGKTKALATARQIAMYLCRE 542 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +T S P IG+ FG RDHTTV+HA +K+ K + Sbjct: 543 LTDMSLPRIGQTFGGRDHTTVMHADKKIRKEM 574 >gi|194476496|ref|YP_002048675.1| chromosomal replication initiation protein [Paulinella chromatophora] gi|171191503|gb|ACB42465.1| chromosomal replication initiation protein [Paulinella chromatophora] Length = 472 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 140/470 (29%), Positives = 246/470 (52%), Gaps = 34/470 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LK + + +W + S + + L P F +W+ YL +I + S+I Sbjct: 15 LKATLTKPTFETWIRPAHCKSFENGELLLEAPNYFACSWLIKHYLPSIIGI----ASKIN 70 Query: 106 GVEILVR-----------SVALPSVEKTASSPSIT--KLSPINTNISKSPIILGKQTISP 152 G +I V+ ++ LP++ KT P T K S + S K+ + P Sbjct: 71 GQQIKVQIFAENNKSAINNLTLPAI-KTTELPRSTSNKFSKDFVSRRISFPSENKERLYP 129 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ R++F+ F+ G ++R+A AA ++AE + NPLFI VGLGKTHL Sbjct: 130 SLPT-LNKRYLFNRFVVGPNSRMAHAAALAVAESPGRCF-----NPLFICGGVGLGKTHL 183 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N +K P R+ +++ E F AI+ + ++ R D+LL+DD+QF++ Sbjct: 184 MQAIGNYRLKIDPEARIFFISTEQFTNDLIQAIKKDGMQIFRECYRKADMLLVDDIQFIE 243 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ Q+V +DRPP+++ L R+ SR G+ + D E Sbjct: 244 GKQYTQKEFFHTFNALYEADCQIVITSDRPPNQIPRLQERLVSRFSMGLIADIQPPDLET 303 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R +IL + E K+ ++++++ ++A + + REL+GA + + + A I + Sbjct: 304 RIAILNKK-----AEQEKMILSKDLVQYMAGRFSANIRELEGALTRAI---ALASITSLP 355 Query: 392 IADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + L+ +++ G K ++ + + V++ +++S +++ S+ R V + RQV MYL + Sbjct: 356 MTATSLAPVIDPGNQKVEVTPQKLINKVSEVFDVSIDEMRSSSRKSAVTQARQVGMYLMR 415 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IG FG +DHTTV++A+ +VEK L ++ L +V+ +K LI Sbjct: 416 KGTNLSLPRIGEAFGGKDHTTVIYAIEQVEKKLISNPKLASQVQKVKDLI 465 >gi|268610504|ref|ZP_06144231.1| chromosomal replication initiation protein [Ruminococcus flavefaciens FD-1] Length = 457 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/340 (36%), Positives = 192/340 (56%), Gaps = 17/340 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV-RLNPLFIHASVGLGKTHLLQAIANAS 220 + F TFIEG SN AL ++S+A+ + G V NPLFI+ G+GKTHL+ AIAN Sbjct: 116 YTFDTFIEGRSNEFALACSKSVAK--NCGEKAVPDYNPLFIYGPSGMGKTHLITAIANEV 173 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD---SLRNIDLLLIDDMQFLQGK-LI 276 K P+ +VY+T+E F +A+ N N+ D RN D+LLIDD+QF GK + Sbjct: 174 RKNHPDFNIVYVTSEAFGGELINAL--NNTGNIDDFHAKYRNADILLIDDIQFFSGKERM 231 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L +Q+V +D+PP EL +L+ R+R+R +GG+ + DYE R +I+ Sbjct: 232 QEEFFHTFYTLHQEGRQIVITSDKPPKELLTLEERLRTRFEGGLIADISAPDYETRLAII 291 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 NR + E +L + EV +A + ++ R+L+GA +L + FA PI T +A Sbjct: 292 -NR----KSELLELKMPSEVAEFMANRLKSNIRQLEGAVVRLKALNHFAGSPI-TISMAQ 345 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++ ++ + + +E I V+ Y +S DL SN+R + R+VA+Y+ + +T Sbjct: 346 SVIRDVLTDEQPIPITVEKIISEVSTVYGVSPEDLRSNKRSAQISIARKVAIYVVREITQ 405 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 IG FG RDH+T++++V V + +E D LK V+ Sbjct: 406 MPLASIGTEFGGRDHSTIVYSVTSVSEAMEKDPNLKNLVQ 445 >gi|239942670|ref|ZP_04694607.1| chromosomal replication initiation protein [Streptomyces roseosporus NRRL 15998] gi|239989129|ref|ZP_04709793.1| chromosomal replication initiation protein [Streptomyces roseosporus NRRL 11379] Length = 611 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 201/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 272 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 326 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 327 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKEST 386 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 387 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIAIL 446 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 447 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 498 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 499 TEIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDDLCGSSRSRVLVTARQIAMYLCR 558 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 559 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 608 >gi|294788716|ref|ZP_06753957.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Simonsiella muelleri ATCC 29453] gi|294483198|gb|EFG30884.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Simonsiella muelleri ATCC 29453] Length = 546 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/346 (35%), Positives = 191/346 (55%), Gaps = 13/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG N +A A+SIAE NP F++ S GLGKTHL+QAI Sbjct: 209 LSPEYTFDTLVEGKGNHLAAAVAKSIAEKPGDSM----YNPFFVYGSTGLGKTHLVQAIG 264 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K RV Y+ ++ ++ F + +R+ K + +LL+IDD+QF+QGK Sbjct: 265 NELLKLNTKARVRYMHSDEYLKTFMATVRNKTWDTFKQQYLHYNLLIIDDIQFIQGKDRT 324 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF L +Q++ D+ PS LE+++ R+ SR G+++ L + EMR IL Sbjct: 325 MEEFFFLFEHFHSRNQQIILTCDQLPSSLENMEKRLISRFSWGMTIKLEPPELEMRVDIL 384 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI--AD 394 + + E + + E+ + +A+ V + REL+GA N+++ R F T +I A Sbjct: 385 ERK-----AEAVGITLLEDAALFIAQNVKQNVRELEGALNRVLARCRFEKRTTIDIDLAT 439 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L +V + K + IE I + VA +++I +DLL +R RTV RPRQ+AM L+K +T Sbjct: 440 DALQDIVASN-YKPITIELIMKAVADYHHIRMSDLLGKKRTRTVARPRQMAMALAKELTN 498 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+HAV+ + K+ + L ++ E L LI Sbjct: 499 MSLPAIGDAFGGRDHTTVMHAVKTIAKLRIDEPELGQDYEKLLILI 544 >gi|260890880|ref|ZP_05902143.1| DNA replication initiator protein, ATPase [Leptotrichia hofstadii F0254] gi|260859433|gb|EEX73933.1| DNA replication initiator protein, ATPase [Leptotrichia hofstadii F0254] Length = 451 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 115/357 (32%), Positives = 198/357 (55%), Gaps = 20/357 (5%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 VF + L+ + F+ G ++++A A ++ + Y NPLFI+ S GLGKTHL Sbjct: 103 VFHTGLNPKHRLDNFVVGENSKLAYNACLAVVNNPTPVY-----NPLFIYGSSGLGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QA+ NA ++ P+ RV Y T+E F F + + +D+ R +D+LL+DD+QF + Sbjct: 158 MQAVGNAILENNPSKRVYYSTSEEFSNEFFKVLNSGRIQHFRDTFRALDVLLLDDIQFFE 217 Query: 273 ---GK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 G+ ++ EF H N L + KQ++ +D+ P E+++L R+ SR G++V + Sbjct: 218 KVFGRGEGTVEEEFFHTFNKLQELGKQIIMISDKSPKEIKNLSKRLESRFLSGLTVEIQS 277 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FA 385 YE R ILKN +A +Q + I++ +L +++ ++ T+ REL+G L R Sbjct: 278 PGYETRMMILKN-MAKTQ----GIEIDDSILEYISDSLDTNVRELEGTLTNLNARAKLLN 332 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T ++ E+L H V E K+ + + +++ Y +S D+ S +R + +V RQ+A Sbjct: 333 EQITMQLVQEMLMHNVKR-EQSKVTAKKVIEIISAQYGVSVTDMKSKKRQKKIVETRQIA 391 Query: 446 MYLSKIMTP--RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL K S IG FG +DH+TV+ ++RK++K + D+ +KE+E L + I Sbjct: 392 MYLLKNNDELDLSLTAIGGLFGGKDHSTVISSIRKIDKKTKEDVVFRKEIEALNKKI 448 >gi|9845531|gb|AAB38528.2| chromosomal replication initiator protein [Mycobacterium tuberculosis] Length = 507 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 145/450 (32%), Positives = 236/450 (52%), Gaps = 42/450 (9%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE--HSRIQGVEILV--- 111 +W ++ +++ LSVP++F++ I+ IT H GV I Sbjct: 46 AWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGHQIQLGVRIAPPAT 105 Query: 112 ----RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--------------TISPV 153 + PS +SP T N I S G T S Sbjct: 106 DEADDTTVPPSENPATTSPDTTT---DNDEIDDSAAARGDNQHSWPSYFTERPHNTDSAT 162 Query: 154 FG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G + L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHL Sbjct: 163 AGVTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHL 217 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD+QF++ Sbjct: 218 LHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIE 277 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E Sbjct: 278 GKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELET 337 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILT 389 R +IL+ + +Q E +L + ++VL +A ++ + REL+GA ++ S PI Sbjct: 338 RIAILRKK---AQME--RLAVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDK 392 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A+ +L L+ T ++ I A++++ + +L + R + + RQ+A+YL Sbjct: 393 A-LAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQSRQIAVYLC 451 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 452 RELTDLSLPKIGQAFG-RDHTTVMYAQRKI 480 >gi|325106587|ref|YP_004267655.1| Chromosomal replication initiator protein dnaA [Planctomyces brasiliensis DSM 5305] gi|324966855|gb|ADY57633.1| Chromosomal replication initiator protein dnaA [Planctomyces brasiliensis DSM 5305] Length = 568 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/337 (35%), Positives = 187/337 (55%), Gaps = 14/337 (4%) Query: 157 PLDSRFV-FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 P RF F+ +N VAL+ A+ +A+ Y NPL+ + VG GKTHLL+ Sbjct: 221 PRRRRFAQLDDFVAEENNHVALSMARVVAQEPGENY-----NPLYFYGGVGTGKTHLLEG 275 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + + + P L V+YLTAE F + A+R+ + + R+ID+LL+DD+ FL K Sbjct: 276 IHSETRQLYPELMVMYLTAEAFANYYTKALREKSLPSFRRRFRSIDVLLVDDVDFLDSKK 335 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 IQ EFCH + LL +Q+V AADR P L ++ + SR G+ L D + R Sbjct: 336 GIQEEFCHTIQELLAYRRQIVLAADRHPRMLTNIRQDLCSRFLAGLVTRLEAPDEQSRQE 395 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIA 393 I++ Q + L I+ E + +++R T S REL GA N L + H + Sbjct: 396 IVRQ-----QAKKVGLPISPEAVDYISRKFTRSARELLGAVNCLQTYHHLTGRAIGVTAT 450 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E+L L + +R D+QR V + +S+ DL+S +R R + +PR VAMYL++ +T Sbjct: 451 REVLKDLERDC-LRIVRTVDVQRAVCDLFGVSQGDLVSAKRTRQLAQPRMVAMYLTRKLT 509 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 ++ EIG++FG R+H+TV+ A RK+++MLE + ++K Sbjct: 510 HAAYQEIGQQFGGRNHSTVMSAERKMQQMLEQNGSMK 546 >gi|158311868|ref|YP_001504376.1| chromosomal replication initiator protein DnaA [Frankia sp. EAN1pec] gi|158107273|gb|ABW09470.1| chromosomal replication initiator protein DnaA [Frankia sp. EAN1pec] Length = 527 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 121/331 (36%), Positives = 190/331 (57%), Gaps = 18/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R++F TF+ G SNR AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 186 LNPRYLFETFVIGDSNRFPHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 240 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++K P ++ Y++ E F F ++IRD+ L + R+ID+LL+DD+QFL+ K Sbjct: 241 HYTVKLYPESKIKYVSMEEFTNDFIASIRDDRQLAFQRRYRDIDVLLVDDIQFLENKERT 300 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L D+ KQ+V ++DR P +L +L+ R+RSR + G+ + D E R +IL Sbjct: 301 QEEFFHTFNVLHDTEKQIVISSDRSPKQLSALEDRLRSRFEWGLITDVTPPDLETRIAIL 360 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + A +L + +VL ++A + + REL+GA ++ +FA + + + Sbjct: 361 SKKAATE-----RLPVPPDVLEYIATHIERNIRELEGALIRVA---AFASLNKSHVDRTL 412 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ ++ I A ++ +S DL R R +V RQ+AMYL + + Sbjct: 413 AEIVLRDLIPDAANPEITAAAIMNATAAYFGVSMEDLCGTSRSRVLVTARQIAMYLCREL 472 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG+ FG RDHTTV+HA RK+ ++ Sbjct: 473 TDLSLPKIGQHFGGRDHTTVMHADRKIRGLM 503 >gi|297620521|ref|YP_003708658.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] gi|297375822|gb|ADI37652.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] Length = 450 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/475 (27%), Positives = 232/475 (48%), Gaps = 32/475 (6%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 C + +T ++ Q + +WF+ +K + L +P F+K ++ Y Sbjct: 4 CTPCDTSDQWTKFLEYIQKQCSATAFGNWFEPIKVLESTSEGISLEIPNIFVKEYLLTNY 63 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + + V S P + S S K + P K Sbjct: 64 KKELCAF------------LPVNSKGEPEIHFVVSRRSAKKAA-----FEAIPASSSKAE 106 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+ + F FIEG +N+ +AA +A Y NPLFIH VGLGK Sbjct: 107 QFKNHDVKLNHNYRFELFIEGPANQFVKSAAMGVAARPGQSY-----NPLFIHGGVGLGK 161 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDM 268 TH+L +I + +R LRV +T E F+ ++R+ LK R+ +D+LL+DD+ Sbjct: 162 THILHSIGHYIHERNKKLRVQCITTEAFINDLVDSLRNKSVDQLKRFYRSQVDVLLVDDI 221 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ +L + EFC+ +L++ KQ+V +D+PPS+L +L R+ +R++ G+ LG+ Sbjct: 222 QFLQNRLNFEEEFCNTFETLINQNKQIVITSDKPPSQL-NLSERMVARMEWGLVAHLGVP 280 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 + E R +IL+++ + L++ V +A + + R+L+GA N+L + Sbjct: 281 ELETRVAILQHK-----AQQKGLDLPNNVAFFIAEHIYNNVRQLEGAINRLSAHCKLLNL 335 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E+ + L +++ K+ +E I + VA + + +DL R + + PRQVAM Sbjct: 336 NITEELVETTLREMLHHAPKSKISVEQILKSVAAVFQVRVSDLRGTSRTKEIALPRQVAM 395 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL+ M + + FG + H+T+LHA + +EK + + TL++++ +++R I+ Sbjct: 396 YLACKMINGTLQTLSDSFG-KAHSTILHACKSIEKKVAENDTLRRQINMVERNIN 449 >gi|124022539|ref|YP_001016846.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9303] gi|166214690|sp|A2C7X1|DNAA_PROM3 RecName: Full=Chromosomal replication initiator protein DnaA gi|123962825|gb|ABM77581.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9303] Length = 463 Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 140/469 (29%), Positives = 245/469 (52%), Gaps = 27/469 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 +++ V L++ + + +W + + L P +F W++ Y++TI Sbjct: 8 LWSKVQQALQHNLSKPTFETWIRPAICSGFRDGELTLIAPNSFASNWLRKNYVQTIEAAA 67 Query: 98 QEEHSRIQGVEILVRSVALPSVEKT----ASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + Q V + V++ S E+ AS+P L + + G + I P Sbjct: 68 AKIYG--QPVRVSVQAQEEDSAERVLPPMASAP--VPLPAAEATTASAAPSSGPRRILPG 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ R+VF+ F+ G ++R+A AA ++AE + NPLFI VGLGKTHL+ Sbjct: 124 ----LNLRYVFNRFVVGPNSRMAHAAALAVAEAPGREF-----NPLFICGGVGLGKTHLM 174 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI + ++ P +V Y++ E F AIR + +D R DL+L+DD+QF++G Sbjct: 175 QAIGHYRLEINPEAKVAYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLILVDDIQFIEG 234 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D E R Sbjct: 235 KEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPKLQERLISRFSMGLIADIQSPDLETR 294 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +IL+ + E ++ + +++ ++A T++ REL+GA + V +FA I + Sbjct: 295 MAILQKK-----AEQERMMLPRDLIQYIAGRFTSNIRELEGALTRAV---AFASITGLPM 346 Query: 393 ADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E ++ +++ G+ + + + V++ ++++ D+ S+ R R V RQV MYL + Sbjct: 347 TVESVAPMLDPNGQGVDVTPQQVIDKVSEVFDVTPQDMRSSSRRRAVSHARQVGMYLMRQ 406 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IG FG +DHTTV++A+ +VEK L +D L +V ++ L+ Sbjct: 407 GTDLSLPRIGETFGGKDHTTVMYAIEQVEKRLSSDPQLASQVRRVRDLL 455 >gi|224531666|ref|ZP_03672298.1| chromosomal replication initiator protein DnaA [Borrelia valaisiana VS116] gi|224511131|gb|EEF81537.1| chromosomal replication initiator protein DnaA [Borrelia valaisiana VS116] Length = 486 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 136/481 (28%), Positives = 244/481 (50%), Gaps = 44/481 (9%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIQISTPNLFHKNQIEKRFTKKIK 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASS--------PSITKLSPINTNISKSPI--- 143 ++ + + V + P K S P+ KL NT SK PI Sbjct: 64 EILTK-NGYNNTVIVFTDQPPKPYSSKQESEKTTFNGIFPNFDKLKG-NTPSSKEPIQSI 121 Query: 144 ------ILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + K+ S F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 122 KDHIKMYIKKEEGSTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY----- 176 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 177 NPCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKKK 236 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DRPPSEL + R+++R Sbjct: 237 YRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRPPSELTNFTDRLKNR 296 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 G++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A Sbjct: 297 FTRGLNVDISKPNFELRVAIIEKKA-----EEDGIKVPKNILNLVAQKVTTNVRDLEAAV 351 Query: 376 NQLVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNIS 425 +L ++ + EI + ++ T E K+ IE+I++++ + I+ Sbjct: 352 TKL---KAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKIA 408 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ Sbjct: 409 HKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNN 468 Query: 486 D 486 D Sbjct: 469 D 469 >gi|257057920|ref|YP_003135808.1| chromosomal replication initiation protein [Cyanothece sp. PCC 8802] gi|256588086|gb|ACU98972.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 8802] Length = 453 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 136/470 (28%), Positives = 238/470 (50%), Gaps = 43/470 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + ++ V RL+ ++ + +W Q N + + V +F I N Sbjct: 1 MNISPQYLWNQVLERLQIRLTRPAFETWIQDATVQEWKDNCLVIQVANSF----ILNHLQ 56 Query: 91 ETITKLFQEEHSRIQGVEILVR-------SVALPSVEKTASSPSITKLSPINTNISKSPI 143 +T + +E + + G + ++ ++A+ ++ S+T+++P + +++ Sbjct: 57 KTYQPIIAQEVASVVGYPVDIQLTTAEGETMAMTGEAQSYQEKSLTQIAPESPKLNQ--- 113 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 L+ R+ FS F+ G +NR+A A+ ++AE + NPLF+ Sbjct: 114 --------------LNPRYTFSRFVVGPTNRMAHAASLAVAESPGREF-----NPLFLCG 154 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+QAIA+ ++ PN +V Y++ E F +AIR + ++ R D L Sbjct: 155 GVGLGKTHLMQAIAHYRLELYPNAKVFYVSTEQFTNDLIAAIRQDSMERFREHYRRADFL 214 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF++GK Q E H N+L ++ KQVV A+DR P + +L R+ SR G+ Sbjct: 215 LIDDIQFIEGKEYTQEELFHTFNTLHEAGKQVVLASDRAPKRIPTLQDRLISRFSMGLIA 274 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + + D E R +IL+ + +Q E+ + + +V+ ++A T++ REL+GA + + Sbjct: 275 DIQVPDLETRMAILQKK---AQYEN--MRLPRDVVEYIATNYTSNIRELEGALIRAIAYT 329 Query: 383 SFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 S + + +T + +L+ V E E I R VA +S DL + R R + Sbjct: 330 SISGLSMTVQNIAPVLNPPV---EQVPASPEVILRTVADSLKVSIEDLKGSSRRREISFA 386 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 RQV MYL + T S P IG FG +DHTTVL++ K+ K+ + D L + Sbjct: 387 RQVGMYLMRQHTELSLPRIGEEFGGKDHTTVLYSCDKISKLQQKDWELSQ 436 >gi|313205512|ref|YP_004044689.1| chromosomal replication initiator protein dnaa [Riemerella anatipestifer DSM 15868] gi|312444828|gb|ADQ81183.1| chromosomal replication initiator protein DnaA [Riemerella anatipestifer DSM 15868] gi|315023384|gb|EFT36394.1| Chromosomal replication initiator protein dnaA [Riemerella anatipestifer RA-YM] gi|325335056|gb|ADZ11330.1| DnaA [Riemerella anatipestifer RA-GD] Length = 492 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 140/497 (28%), Positives = 258/497 (51%), Gaps = 42/497 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCL+ +++ + ++G + F R++ S+++N + + VP++F K +I+ Sbjct: 11 RCLQFMKDNLNAMEQGDAMGKLGSSFHL-LFDRVQPISLVNNNLTIGVPSDFYKEYIEEN 69 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEK------TASS--------PSITKLSP- 133 YL ++ ++ + GV++ + S E TA+ P ++ P Sbjct: 70 YLPLLSAALRKNIGK--GVKLWYSVLDKKSQENQQVQQQTATHIKGMSMPVPKPQEIMPP 127 Query: 134 -INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 +++ I ++ G + IS S L+ F F+EG SN+ A +AA+ IA+ G T Sbjct: 128 SLSSKIQNPLVVPGLKKIS--VESNLNPVHSFDNFVEGESNKFAFSAAKIIAK--RPGET 183 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-L 251 + NP+FI+ VG+GKTH+ QAI P+ V YL++E F+ +F A N Sbjct: 184 S--FNPMFIYGGVGVGKTHIAQAIGLEIKNTYPDKVVHYLSSEKFIQQFIKAANSNRGNA 241 Query: 252 NLKDSLRN----IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 N ++ N +D+L++DD+QFL GK Q F H+ + L + KQ++ +D+ P+++ Sbjct: 242 NSREDFANFYKMLDVLIVDDIQFLSGKRATQDSFFHIFDYLHQNGKQIILTSDKAPADIM 301 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 ++ R+ SR + G++ + DY+ R I+ ++L + ++E+++ +A V + Sbjct: 302 DIEERVVSRFKWGLTAEIKSPDYDTRRKIIVDKL-----HRDGIALSEDMIDFLAGEVQS 356 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN---TGETKKMRIEDIQRMVAKHYN 423 + REL G N ++ +++ I +++ +LL +N + K + I IQ +V ++ Sbjct: 357 NVRELIGVINAVI---AYSTIYKSDLTLDLLKETINKISANQKKVISIPYIQEVVCDYFG 413 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 I R LLS R R + PRQ+AMY +K T +F +IG G +DH+TV++A V+ Sbjct: 414 IKREQLLSKTRKRDIALPRQLAMYFAKEFTDATFTKIGEEMGGKDHSTVMYACDTVKNTA 473 Query: 484 ETDITLKKEVELLKRLI 500 E D ++K ++ LK I Sbjct: 474 EVDKQMRKYIKELKEKI 490 >gi|294813740|ref|ZP_06772383.1| Chromosomal replication initiator protein dnaA [Streptomyces clavuligerus ATCC 27064] gi|294326339|gb|EFG07982.1| Chromosomal replication initiator protein dnaA [Streptomyces clavuligerus ATCC 27064] Length = 597 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 200/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 258 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 312 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 313 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKEST 372 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 373 QEEFFHTFNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAIL 432 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 433 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 484 Query: 393 ADELLSHLVNTGETKKMRIED--IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ DL + R R +V RQ+AMYL + Sbjct: 485 TEIVLKDLIPGGEDSAPEITAGAIMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCR 544 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 545 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 594 >gi|326442161|ref|ZP_08216895.1| chromosomal replication initiation protein [Streptomyces clavuligerus ATCC 27064] Length = 587 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 200/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 248 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 302 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 303 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKEST 362 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 363 QEEFFHTFNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAIL 422 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 423 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 474 Query: 393 ADELLSHLVNTGETKKMRIED--IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ DL + R R +V RQ+AMYL + Sbjct: 475 TEIVLKDLIPGGEDSAPEITAGAIMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCR 534 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 535 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 584 >gi|325677520|ref|ZP_08157184.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707] gi|325551767|gb|EGD21465.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707] Length = 524 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 201/340 (59%), Gaps = 19/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S G+ L++++ F TF+ G+SNR A AA +IAE + Y NPLFI + GLG Sbjct: 176 STSATGGNSLNAKYTFDTFVIGASNRFAHAAAVAIAEAPARAY-----NPLFIWGASGLG 230 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A + + + P LRV Y++ E F F +++RD+ + K R D+LL+DD+ Sbjct: 231 KTHLLHAAGHYAQRLFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDI 290 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + Sbjct: 291 QFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPP 350 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 + E R +IL + + +L++ +VL +A + + REL+GA L+ +FA + Sbjct: 351 ELETRIAILSKKARMD-----RLDVPHDVLELIASRIERNIRELEGA---LIRVTAFASL 402 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 L ++A+ +L L+ ++ I + A+++N S +DL + R + + RQ Sbjct: 403 NRQALDLKLAEVVLRDLMPDSAALEINAATIMAVTAEYFNTSIDDLCGPGKARPLAQARQ 462 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG+ FG RDHTTV++A +K+ K + Sbjct: 463 IAMYLCRELTDLSLPKIGQTFG-RDHTTVMYADKKIRKEM 501 >gi|291297539|ref|YP_003508817.1| chromosomal replication initiator protein DnaA [Stackebrandtia nassauensis DSM 44728] gi|290566759|gb|ADD39724.1| chromosomal replication initiator protein DnaA [Stackebrandtia nassauensis DSM 44728] Length = 566 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 126/352 (35%), Positives = 193/352 (54%), Gaps = 15/352 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L+ ++ F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTH Sbjct: 220 PATATRLNPKYSFDTFVIGSSNRFAHAAAVAVAESPAKAY-----NPLFIYGDSGLGKTH 274 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI + + V Y++ E F F +++RD+ + R++D+LLIDD+QFL Sbjct: 275 LLHAIGHYAQNLGNAKSVRYVSTEEFTNDFINSLRDDKRQAFQRRYRDVDILLIDDIQFL 334 Query: 272 Q-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 + + Q EF H N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E Sbjct: 335 ERAERTQEEFFHTFNTLHNANKQLVITSDRSPKQLSTLEDRLRTRFEWGLLADIQPPDLE 394 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PIL 388 R +IL+ + A +L+ + L +A + S REL+GA ++ S P Sbjct: 395 TRIAILQKKAAQE-----RLDAPPDALEFIASRINHSIRELEGALIRVTAYASLTNKPAD 449 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A +A E+L + GE+ + E I A ++ +S DL + R R + RQVAMYL Sbjct: 450 LA-LAQEVLRDFIPEGESPDITTEAIMHATADYFGVSDADLRGHSRSRVLANARQVAMYL 508 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 + +T S P IG+ FG RDHTTV++A RK+ K + L ++ EL RL Sbjct: 509 CRELTELSLPRIGQAFGGRDHTTVMYADRKIRKQMAEKRALYDQIAELTNRL 560 >gi|282863320|ref|ZP_06272379.1| chromosomal replication initiator protein DnaA [Streptomyces sp. ACTE] gi|282561655|gb|EFB67198.1| chromosomal replication initiator protein DnaA [Streptomyces sp. ACTE] Length = 577 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 200/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 238 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 292 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 293 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKEST 352 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 353 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIAIL 412 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 413 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 464 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ DL + R R +V RQ+AMYL + Sbjct: 465 TEIVLKDLIPGGEDTAPEITAPAIMASTADYFGLTVEDLCGSSRSRVLVTARQIAMYLCR 524 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 525 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 574 >gi|312137515|ref|YP_004004851.1| chromosome replication initiator protein dnaa [Rhodococcus equi 103S] gi|311886854|emb|CBH46162.1| chromosome replication initiator protein DnaA [Rhodococcus equi 103S] Length = 524 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/340 (35%), Positives = 201/340 (59%), Gaps = 19/340 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S G+ L++++ F TF+ G+SNR A AA +IAE + Y NPLFI + GLG Sbjct: 176 STSATGGNSLNAKYTFDTFVIGASNRFAHAAAVAIAEAPARAY-----NPLFIWGASGLG 230 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A + + + P LRV Y++ E F F +++RD+ + K R D+LL+DD+ Sbjct: 231 KTHLLHAAGHYAQRLFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDI 290 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + Sbjct: 291 QFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPP 350 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 + E R +IL + + +L++ +VL +A + + REL+GA L+ +FA + Sbjct: 351 ELETRIAILSKKARMD-----RLDVPHDVLELIASRIERNIRELEGA---LIRVTAFASL 402 Query: 388 ----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 L ++A+ +L L+ ++ I + A+++N S +DL + R + + RQ Sbjct: 403 NRQALDLKLAEVVLRDLMPDSAALEINAATIMAVTAEYFNTSIDDLCGPGKARPLAQARQ 462 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +AMYL + +T S P+IG+ FG RDHTTV++A +K+ K + Sbjct: 463 IAMYLCRELTDLSLPKIGQTFG-RDHTTVMYADKKIRKEM 501 >gi|153002880|ref|YP_001377205.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. Fw109-5] gi|152026453|gb|ABS24221.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. Fw109-5] Length = 460 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 142/465 (30%), Positives = 240/465 (51%), Gaps = 32/465 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ + + L++++ PD+Y WF L+ S+ + ++ P F + ++++ Y Sbjct: 17 ALWARIDTYLRSRLRPDLYDRWFAPLRLVSLEGGRLQIAAPDPFHRDFVEDNY----RAF 72 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F+E I G + LP S+P + + SP+ + P Sbjct: 73 FEEFAPGILGRQ-------LPIAFVVDSAPRVASPPAPAAGPALSPVPRAAEPADPRESR 125 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P + R+ F TF+ G SNR A AAQ++A H + NPLF+H GLGKTHLL A+ Sbjct: 126 P-NPRYTFDTFVVGESNRFAFAAAQAVAANPGHTW-----NPLFLHGDSGLGKTHLLHAL 179 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 A+A + +Q RV +++E + F +A+ + + R LL+DD+QFL GK Sbjct: 180 AHAILDKQGG-RVAIVSSERYTNDFVAALSKGTMDDFRRKYRECTALLVDDVQFLAGKDK 238 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 EF H N L D Q+V ++DR P EL+ LD R+ SR + G+ V + ++E R +I Sbjct: 239 TAEEFFHTFNELHDHHVQIVLSSDRSPKELKGLDARLCSRFEWGMRVQVEAPEFETRAAI 298 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAE 391 L+ + + +++ +V +A + ++ REL+GA +L +FA + +T Sbjct: 299 LQKKAEVES-----IDLPGDVTQLLAAHIRSNVRELEGALMRLA---AFASLKSEPITVA 350 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A ++LS ++ E K IE IQ VA HY ++ L S+ R + + PRQ AMYL + Sbjct: 351 LARDVLSDVIPP-EGYKPTIERIQEAVAAHYGLTVAKLTSSSREQKIALPRQAAMYLCRE 409 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 + F I RF +DHTTV+ AV ++ ++ET+ ++ V++L Sbjct: 410 LGKEKFQAIAERFNKKDHTTVIAAVERIRTLMETEEPVRSAVQVL 454 >gi|157736272|ref|YP_001488955.1| chromosomal replication initiator protein DnaA [Arcobacter butzleri RM4018] gi|167016897|sp|A8EQT0|DNAA_ARCB4 RecName: Full=Chromosomal replication initiator protein DnaA gi|157698126|gb|ABV66286.1| chromosomal replication initiator protein DnaA [Arcobacter butzleri RM4018] Length = 438 Score = 193 bits (491), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 133/468 (28%), Positives = 241/468 (51%), Gaps = 46/468 (9%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETITKL 96 F + + NQ+ Y + ++L + V + I V ++ +WIK+++ I Sbjct: 6 FLTIIQKEANQID---YERYLKQLVYKKVSSDNKIAIFEVNNKYIASWIKSKFTNLIQHC 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F+ + + P++E KLS N SK I+ + + Sbjct: 63 FE------------IYDGSKPTIE--------IKLS--NEKKSKKEILKEQTQNESTEST 100 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ + F +F+ G SN++A A+ ++A ++ NPLFI+ GLGKTHLLQA+ Sbjct: 101 ILNPSYTFDSFVVGPSNQMAYNASLAVA-----NKPGIQYNPLFIYGGTGLGKTHLLQAV 155 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N +I++ V+Y+T E FM F +I++ + ++ R D+LLIDD+QFL GK Sbjct: 156 GNHAIEKGNT--VIYVTIEQFMNDFTFSIKNKNMEHFRNKYRKCDVLLIDDIQFLSGKEQ 213 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N L ++ KQ+V +DR PS++ L R++SR + G++ + + E + +I Sbjct: 214 TQEEFFHTFNELHNAKKQIVMTSDRLPSQIAGLVDRLKSRFEWGLTADVQIPGLETKIAI 273 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 ++ + ++ + ++ E++ +A + S RE++G L+ ++ A +L EI Sbjct: 274 IEKKSELN-----GICLSREIINFIATNLDNSIREIEGV---LIRINASASLLNQEITLP 325 Query: 396 LLSHLV--NTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 ++ L+ ETK+ +++ DI +VA NI +D+ S +R TV R++ +YL + + Sbjct: 326 MVQGLLKEQIKETKENVKLPDIINIVANQLNIKPSDIKSKKRTATVANARRIVIYLVREL 385 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+I + G +DH+ + H ++K +++E D K +E LK I Sbjct: 386 THNSMPDIAKFLGMKDHSAISHNIKKANELIEKDENFKLIIENLKNKI 433 >gi|300778760|ref|ZP_07088618.1| DNA-directed DNA replication initiator protein [Chryseobacterium gleum ATCC 35910] gi|300504270|gb|EFK35410.1| DNA-directed DNA replication initiator protein [Chryseobacterium gleum ATCC 35910] Length = 484 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 131/462 (28%), Positives = 242/462 (52%), Gaps = 35/462 (7%) Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE------------HSRIQG 106 F +++ S++ N + L VP++F K +I++ YL ++ ++ +R +G Sbjct: 40 FDKVQPLSLVANNLTLIVPSDFYKEYIEDNYLSLLSAALKKNIGKGVKLWYSVMENRPKG 99 Query: 107 VEILVRSVALPSVEKTASSPSITKLSP--INTNISKSPIILGKQTISPVFGSPLDSRFVF 164 E + V + ++ +P + P + NI ++ G + ++ S L + F Sbjct: 100 EE---KPVTMNIKGQSVPTPKTQETMPQGFSANIVNPFVVPGIRKVN--IDSNLKPDYSF 154 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 +++EG SN+ A T A+SIA+ G T NPLF++ G+GKTHL QA+ + Sbjct: 155 DSYVEGESNKFAATVARSIAK--RPGATA--FNPLFLYGGYGVGKTHLGQAVGLEVKNQF 210 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 P+ V+YL++E F+ +F SA + + + + +D+L+IDD+QFL GK Q F H+ Sbjct: 211 PDKVVLYLSSEKFIQQFISAAKAHKQTEFANFYQMVDVLIIDDIQFLSGKSATQDSFFHI 270 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 + L + KQ++ +D+ P+++ + RI SR + G+S + D R I++++L+ Sbjct: 271 FDHLHQNGKQIILTSDKAPADIMDIQDRIVSRFKWGLSAEIKSPDLSTRRQIIEDKLSRD 330 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN- 402 + + ++L +A T+ REL G N ++ +++ + +++ ELL +N Sbjct: 331 -----GIVLPGDMLDFLAAEAKTNVRELIGVINSVI---AYSTVYKRDLSLELLKETINR 382 Query: 403 --TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + K + I IQ +V ++ I + LLS R R + PRQ+AMY SK T +F +I Sbjct: 383 IAANQKKVINIPYIQEVVCDYFGIKKEQLLSKTRKREIALPRQLAMYFSKEFTNSTFTKI 442 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G G +DH+TV++A ++ + + D +KK V+ L I + Sbjct: 443 GEEMGGKDHSTVMYACDTIKDVSKIDKEIKKYVKDLTERIKQ 484 >gi|34556459|ref|NP_906274.1| chromosomal replication initiation protein [Wolinella succinogenes DSM 1740] gi|61212685|sp|Q7MSY2|DNAA_WOLSU RecName: Full=Chromosomal replication initiator protein DnaA gi|34482173|emb|CAE09174.1| dnaA, probable chromosomal replication initiator protein [Wolinella succinogenes] Length = 437 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 125/462 (27%), Positives = 239/462 (51%), Gaps = 43/462 (9%) Query: 45 RLKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +LK+++ Y + ++L++ + ++ P F+ W+K +Y E + LF+ Sbjct: 9 QLKDEISTLEYERYIKQLRYDEEASRTDLAVYIAPNQFIANWVKTKYGERLAHLFELSTG 68 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 +EI L S++K S S K+ + G+++ + L+ F Sbjct: 69 IRPKIEI-----RLGSLKKDVKSSS-----------PKAGVSKGQKS------TILNPSF 106 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F +F+ G+SNR A +Q++A+ Y NPL I+ GLGKTHLL +I N ++ Sbjct: 107 TFDSFVVGNSNRFAYEVSQNVAKKQGIAY-----NPLLIYGGTGLGKTHLLNSIGNYNVA 161 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 + + V+Y+T+E F+ + IR+N +D R D LLIDD+QF GK IQ EF Sbjct: 162 KGKS--VIYVTSEQFLNDYLYHIRNNTMDRFRDKYRACDYLLIDDVQFFGGKPQIQEEFF 219 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L + KQ+V +D+ P ++ L+ R++SR + G+ + + E + +I+K + Sbjct: 220 HTFNELHNKNKQIVLTSDKTPKQIAGLEERLKSRFEWGMVSDIQPPELETKINIIKKKC- 278 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 E + ++ E++ ++A + + RE++G +L +++A ++ EI + +++ Sbjct: 279 ----EFDGIYLSNEIISYIATNMDNNIREIEGIIIKL---NAYANLMNQEITLQFAKNVL 331 Query: 402 NTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 E + + +E+I +V+K N+ ++ S R + + R++ ++L++ +TP S P Sbjct: 332 KEQIKEERENITLENIIEVVSKELNVKPAEIKSKGRSKNIANARRIVIFLARTLTPNSMP 391 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + + FG +DH++V A++ V+ +E D K +E LK I Sbjct: 392 SLAQFFGMKDHSSVSKAMKTVKTEIEEDANFKMVIEELKNKI 433 >gi|291541862|emb|CBL14972.1| chromosomal replication initiator protein DnaA [Ruminococcus bromii L2-63] Length = 452 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 132/471 (28%), Positives = 234/471 (49%), Gaps = 44/471 (9%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQR-----LKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 E + ++S K+++ Y +W R L F + +L VP +F ++ Y+ Sbjct: 5 EDAWKVISDYCKSKITDIAYNTWISRIQPVDLDFD---NGTAYLLVPNDFHAQTLRRCYM 61 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + F+E I G + + P+ S PS Sbjct: 62 SLLNEGFEE----IFGTKFNIE-FRTPANAPKKSKPSAAASI------------TTSAAT 104 Query: 151 SPVFGSPLDS--RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P+ SP S + F TFI GSSN+ A A ++A SH Y NPLF++ + GLG Sbjct: 105 APLLQSPDSSSYEYTFDTFIVGSSNKFAHAACLAVATNPSHAY-----NPLFLYGNSGLG 159 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N K P+ + Y+ + F ++R + R D+LL+DD+ Sbjct: 160 KTHLLYAIGNEIKKNDPSKVICYIKGDDFTVELVESLRLAKMNEFRQKYRQADILLVDDV 219 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H N+L D+ KQ+V +DRPP E+++L+ R+RSR + + + Sbjct: 220 QFIGGKESTQEEFFHTFNALYDARKQIVLTSDRPPKEIKTLEDRLRSRFEQDLIADIQPP 279 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--- 384 D E R +I+K + + E I++EV +VA + + R+L+G ++ ++ Sbjct: 280 DLETRIAIIKRKAELDGVE-----ISDEVCEYVASKIKANIRQLEGTVKKIKAKYYLDGE 334 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR-RVRTVVRPRQ 443 P + + ++S ++N ++ +E I VA+ Y +S +++ S + R + R Sbjct: 335 KPTINS--VQGIISDILNNDAPPEVTVERIIDEVARTYGVSADEIRSQKNRSANISNARH 392 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +A+Y+++ +T S IG FG+R ++T+++ ++KV+KM+E D +K+ ++ Sbjct: 393 IAIYVTRELTTLSMVAIGEEFGNRHYSTIIYTIQKVQKMMEKDRKVKEIID 443 >gi|256826461|ref|YP_003150420.1| chromosomal replication initiator protein DnaA [Cryptobacterium curtum DSM 15641] gi|256582604|gb|ACU93738.1| chromosomal replication initiator protein DnaA [Cryptobacterium curtum DSM 15641] Length = 506 Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 141/482 (29%), Positives = 246/482 (51%), Gaps = 42/482 (8%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS--RIQGVEILVRSV 114 ++F RL + + L+ T F+K WI++ Y + I + +E + +E+ S Sbjct: 30 AFFSRLVPQAFSEGFLMLTSDTEFIKKWIESHYTDVIKQALEEIYQVPFTIAIEVDTPSS 89 Query: 115 ALPSVEK---------------TASSPSITKL---------SPINTNISKSPII-LGKQT 149 A V++ S PS+ L SP++ N S SP ++T Sbjct: 90 AAEGVQQDQQNDVTHTTPQHTSQQSEPSVKSLNERGSQSPFSPVSNNHSASPFTPTAEET 149 Query: 150 IS--PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 IS F + + S + F +F+ G+SN++A + A ++AE + NPLFI+ GL Sbjct: 150 ISHNQDFLNSVISGYSFESFVIGTSNKMAYSMAVAVAETPGQP----QFNPLFIYGKSGL 205 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI--RDNCALN-LKDSLRNIDLLL 264 GKTHLL++I N P + VY+ + + A R N + + K D+LL Sbjct: 206 GKTHLLRSIQNYVHHAYPTAKTVYVDTMALVNDYTDAAISRSNKSFSQFKQKYETADVLL 265 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+Q LQ K + +LNS++D KQVV +ADR P ++ +D R SR G + Sbjct: 266 IDDVQGLQNKKETLNMVFQILNSMIDRGKQVVFSADRAPKNID-IDERYMSRFNMGGTCD 324 Query: 324 LGLHDYEMRFSILKNRLAISQK-EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF-- 380 + + E + I+KN L ++ + +I +V ++A+ +++ REL A ++VF Sbjct: 325 IQPPELETKLGIIKNYLEECRRGANDDFSIPADVQEYIAQNSSSNIRELKSAVTKVVFEL 384 Query: 381 RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 R++ +T + A LL+ + G K++ I DIQ V ++YN+S +L+ +R + Sbjct: 385 RNNGKSEITIDEAARLLTDHFSGGAMKRLSISDIQTAVEQYYNVSHTELVGRKRSANITY 444 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+A+YL + M F IG F +RDH+T++++ R VE+ ++ + +E+E+++++I Sbjct: 445 ARQIAIYLCRTMIDIPFNSIGTEF-NRDHSTIMYSFRSVEEKVKESRQVNEELEIIRQMI 503 Query: 501 SE 502 E Sbjct: 504 IE 505 >gi|307298971|ref|ZP_07578773.1| chromosomal replication initiator protein DnaA [Thermotogales bacterium mesG1.Ag.4.2] gi|306915396|gb|EFN45781.1| chromosomal replication initiator protein DnaA [Thermotogales bacterium mesG1.Ag.4.2] Length = 447 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 136/443 (30%), Positives = 225/443 (50%), Gaps = 34/443 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S LK +V + +WF + +V V SV F+K W++ +Y I+ Sbjct: 7 STLKKKVSKKTWDNWFSTFELKAVEDERVVFSVANLFIKDWLQTKYGAVISDSI------ 60 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 EIL R V+ V K +PS+ S IS S +L ++ P+ S L+ + Sbjct: 61 ---AEILGRRVSFEIVYKNKETPSVDSTSD---QISGS--LLKRK---PLMISNLNPEYT 109 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 FS F+ GS N+ A + + + NP F++ VGLGKTHLLQAIA ++ Sbjct: 110 FSNFVVGSENKALYEVALDVTQ------NPGKYNPFFVYGGVGLGKTHLLQAIAQETMSN 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQHEFC 281 P+ +V+Y+T+E FM +I++N +D R D+LLIDD+QFL GK +Q+EF Sbjct: 164 FPDKKVLYITSEQFMNDMIQSIKENNIQKFRDHYRKKSDILLIDDIQFLIGKKGVQNEFF 223 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L DS KQ++ +DR P ELE+ R++SR Q G+ + + RF I K Sbjct: 224 HSFNELHDSGKQLIICSDRNPEELETFHSRLKSRFQMGMLMSIQEPRPSTRFHIAKQ--- 280 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLSHL 400 ++Q+E +++ ++V +A + + R L GA +L+ S F + +A ++L Sbjct: 281 LAQRES--VSLPDDVAKVLADNIDGNLRRLRGAIIKLIVHSSVFRSQIDLSLATQILQSF 338 Query: 401 VNTGETKKMR--IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + + I+ I + K +++ ++ S R + +V RQ+ MY+ K + Sbjct: 339 TGSINVPAFQRPIDQIYSAIEKTMKVTKKEIESGSRSKDIVLARQLTMYILKNHFGKQVT 398 Query: 459 EIGRRFGDRDHTTVLHAVRKVEK 481 EI R G + H+TV+H+++K++K Sbjct: 399 EIARETG-KQHSTVIHSLKKIDK 420 >gi|269124278|ref|YP_003297648.1| chromosomal replication initiator protein DnaA [Thermomonospora curvata DSM 43183] gi|268309236|gb|ACY95610.1| chromosomal replication initiator protein DnaA [Thermomonospora curvata DSM 43183] Length = 721 Score = 193 bits (490), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 123/348 (35%), Positives = 205/348 (58%), Gaps = 19/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 380 LNPKYTFETFVIGSSNRFAHAAAVAVAEQPAKAY-----NPLFIYGDSGLGKTHLLHAIG 434 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + +RV Y+++E F F +AIRD A + + R+ID+LL+DD+QFL+GK Sbjct: 435 HYAQSLFSGVRVRYVSSEEFTNDFINAIRDGKADHFRRRYRDIDILLVDDIQFLEGKEQT 494 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +++KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 495 QEEFFHTFNTLHNASKQIVISSDRPPKDLVTLEDRLRNRFEWGLTTDVQPPELETRIAIL 554 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +++E L + ++V+ +A + T+ REL+GA ++ ++A + + + Sbjct: 555 QKK---ARQE--GLAVPQDVVEFIASQIATNIRELEGALIRVT---AYASLNRQSVDMRV 606 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ ++ I +++ + DL R R +V RQ+AMYL + + Sbjct: 607 AETVLKDLIPDDSGPEITAAMIMAQTVEYFGTTIEDLCGPSRSRMLVTARQIAMYLCREL 666 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 T S P+IG +FG RDHTTV+HA RK+ ++ + +V EL R+ Sbjct: 667 TDLSLPKIGAQFGGRDHTTVMHAERKIRALMAERRAIYNQVTELTGRI 714 >gi|258650272|ref|YP_003199428.1| chromosomal replication initiation protein [Nakamurella multipartita DSM 44233] gi|258553497|gb|ACV76439.1| chromosomal replication initiator protein DnaA [Nakamurella multipartita DSM 44233] Length = 557 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 116/333 (34%), Positives = 196/333 (58%), Gaps = 18/333 (5%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F TF+ G+SNR A AA ++AE + Y NPLFI GLGKTHLL Sbjct: 215 SRLNEKYSFETFVIGASNRFAHAAAVAVAEAPAVAY-----NPLFIWGDSGLGKTHLLHG 269 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + + + P +RV Y+++E F F +++RD+ + + R++D+LL+DD+QFL+GK Sbjct: 270 IGHYAQRLFPGMRVRYVSSEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDDIQFLEGKE 329 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V ++DRPP LE+L+ R+R+R + G+ + + E R + Sbjct: 330 GTQEEFFHTFNTLYNANKQIVISSDRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIA 389 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 IL+ + A+ ++N ++VL +A + + REL+GA L+ +FA + + Sbjct: 390 ILRKKAALD-----RMNAPDDVLEFIASRIERNIRELEGA---LIRVTAFASLNKQAVDL 441 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A +L LV + + I + A+++N++ ++L + + + RQ+AMYL + Sbjct: 442 ALAQIVLRDLVRDAVSNDIDAATIMAVTAEYFNVTLDELCGPVKTKQIAMARQIAMYLCR 501 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +T + P+IG FG RDHTTV+HA +K+ L Sbjct: 502 ELTDLTLPKIGATFGGRDHTTVMHATKKIRTEL 534 >gi|219684275|ref|ZP_03539219.1| chromosomal replication initiator protein DnaA [Borrelia garinii PBr] gi|219672264|gb|EED29317.1| chromosomal replication initiator protein DnaA [Borrelia garinii PBr] Length = 485 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 133/475 (28%), Positives = 245/475 (51%), Gaps = 43/475 (9%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLYFLESIGDNIQISTPNLFHKNQIEKRFTKKIK 63 Query: 95 KLFQEEHSRIQGVEILVRS------VALPSVEKTASSPSITKLSPINTN-ISKSPI---- 143 ++ + + V I+ + + EKT + S+ + N +SK PI Sbjct: 64 EILTK--NGYNNVTIVFTNQPPKTYSSKQESEKTTFNESLQNFDKLKGNTLSKEPIQSIK 121 Query: 144 -----ILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + K+ F +P L R+ F FI G +NR+A A+ SI++ Y N Sbjct: 122 DHIKMYIKKEEEPTNFKNPFLKKRYTFENFIIGPNNRLAYNASLSISKNPGKKY-----N 176 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 P I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 177 PCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKKKY 236 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR Sbjct: 237 RYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKSRF 296 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G++V + ++E+R +I++ + E+ + + +++L VA+ VTT+ R+L+ A Sbjct: 297 TRGLNVDISKPNFELRVAIIEKKA-----EEDGIKVPKDILNLVAQKVTTNVRDLEAAVT 351 Query: 377 QLVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNISR 426 +L ++ + EI + ++ T E K+ IE+I++++ + I+ Sbjct: 352 KL---KAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKIAH 408 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ Sbjct: 409 KDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDR 463 >gi|318079379|ref|ZP_07986711.1| chromosomal replication initiation protein [Streptomyces sp. SA3_actF] Length = 361 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 125/350 (35%), Positives = 201/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 22 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 76 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 77 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKEST 136 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 137 QEEFFHTFNTLHNANKQIVLSSDRPPRQLVTLEDRLRNRFEWGLTTDVQPPELETRIAIL 196 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 197 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 248 Query: 393 ADELLSHLVNTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE + ++ I A ++ + DL + R R +V RQ+AMYL + Sbjct: 249 TEIVLKDLIPGGEDASPEITASAIMSATADYFGQTVEDLCGSSRSRVLVTARQIAMYLCR 308 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 309 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 358 >gi|296453188|ref|YP_003660331.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JDM301] gi|296182619|gb|ADG99500.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JDM301] Length = 500 Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 200/373 (53%), Gaps = 23/373 (6%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 E + P P+ S+ P+ G+Q ++ + L+ F F +F+ G SNR A T Sbjct: 121 ESYGAKPVAAPREPMPATESQFPV--GQQKMNRDPETHLNKNFTFDSFVPGDSNRFARTV 178 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A ++AE + NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E F Sbjct: 179 ALAVAEGSGQDF-----NPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTN 233 Query: 240 RFASAIRD-----NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 F A+++ R +D+LLIDD+QFL GK +F H N+L + K+ Sbjct: 234 EFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHQANKR 293 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V A+D P L+ + R+ SR + G++V + D E R +IL+ +++ + P Sbjct: 294 IVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIASMNGSKIPS---- 349 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRI 411 +VL +A T + REL+GA ++ S + P+ T +A++ L T +++ Sbjct: 350 -DVLDLIAERFTENIRELEGALTRVTAVASLSNQPV-TRALAEQTLQDFFTT--DVEIKP 405 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 DI VAK+++++ DL+ R + V PRQ+AMYL++ MT S +IG+ FG RDHTT Sbjct: 406 TDIISQVAKYFHLTFEDLVGKSRTKNVAVPRQIAMYLAREMTSMSLMDIGQVFGGRDHTT 465 Query: 472 VLHAVRKVEKMLE 484 V+HA ++ ++ Sbjct: 466 VMHACTRISDRMQ 478 >gi|283454960|ref|YP_003359524.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium Bd1] gi|283101594|gb|ADB08700.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium Bd1] Length = 500 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 124/351 (35%), Positives = 192/351 (54%), Gaps = 22/351 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F TF+ G SNR A T A ++AE H + NPL I+ GLGKTHLL AI Sbjct: 156 LNKNATFDTFVPGDSNRFARTVALAVAEGSGHDF-----NPLCIYGGSGLGKTHLLNAIG 210 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKD---SLRNIDLLLIDDMQFLQ 272 N ++ + PNL+V Y+T+E F F A+ D + +K+ R +D+LLIDD+QFL Sbjct: 211 NYALVKDPNLKVRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLS 270 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D PP +L+ R+ SR + G++V + D E Sbjct: 271 GKEATLEQFFHTFNTLHQANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLET 330 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R +IL+ ++ NI +VL +A T + REL+GA N++ + A + Sbjct: 331 RIAILRMMATMNGS-----NIPNDVLNLIAERFTENIRELEGALNRVT---AMASLSNQP 382 Query: 392 IADELLSHLVNTGETKKMRIE--DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + L H + T + I+ DI VAK+++++ +D++ R + + RQVAMYL Sbjct: 383 VTRALAEHTLQDFFTSDVEIKPADIISQVAKYFHLTFDDIVGRSRTKNIALARQVAMYLV 442 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 + +T S +IG FG +DHTTV+HA ++ ++M E +EL RL Sbjct: 443 RELTSMSLNDIGLVFGGKDHTTVMHAYTRISDEMQEKQEIYNYVMELTVRL 493 >gi|213690929|ref|YP_002321515.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254777888|sp|B7GSF9|DNAA_BIFLS RecName: Full=Chromosomal replication initiator protein DnaA gi|213522390|gb|ACJ51137.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|291517733|emb|CBK71349.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum F8] gi|320456975|dbj|BAJ67596.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 500 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 200/373 (53%), Gaps = 23/373 (6%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 E + P P+ S+ P+ G+Q ++ + L+ F F +F+ G SNR A T Sbjct: 121 ESYGAKPVAAPREPMPATESQFPV--GQQKMNRDPETHLNKNFTFDSFVPGDSNRFARTV 178 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A ++AE + NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E F Sbjct: 179 ALAVAEGSGQDF-----NPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTN 233 Query: 240 RFASAIRD-----NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 F A+++ R +D+LLIDD+QFL GK +F H N+L + K+ Sbjct: 234 EFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHQANKR 293 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V A+D P L+ + R+ SR + G++V + D E R +IL+ +++ + P Sbjct: 294 IVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIASMNGSKIPS---- 349 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRI 411 +VL +A T + REL+GA ++ S + P+ T +A++ L T +++ Sbjct: 350 -DVLDLIAERFTENIRELEGALTRVTAVASLSNQPV-TRALAEQTLQDFFTT--DVEIKP 405 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 DI VAK+++++ DL+ R + V PRQ+AMYL++ MT S +IG+ FG RDHTT Sbjct: 406 TDIISQVAKYFHLTFEDLVGKSRTKNVAVPRQIAMYLAREMTSMSLMDIGQVFGGRDHTT 465 Query: 472 VLHAVRKVEKMLE 484 V+HA ++ ++ Sbjct: 466 VMHACTRISDRMQ 478 >gi|282858609|ref|ZP_06267771.1| chromosomal replication initiator protein DnaA [Prevotella bivia JCVIHMP010] gi|282588613|gb|EFB93756.1| chromosomal replication initiator protein DnaA [Prevotella bivia JCVIHMP010] Length = 467 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 131/450 (29%), Positives = 229/450 (50%), Gaps = 28/450 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI-LV 111 Y +WF+ L F S L V P+ F+ +++ Y++ + K+ +R+ G + L Sbjct: 25 YNTWFKPLVFKSYQPATKRLLVLVPSMFVYEYLEEHYVDLLKKVL----TRVFGERVMLT 80 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT------ISPVFGSPLDSRFVFS 165 SV + + PI+ SK P + G Q+ + P S LD F+ Sbjct: 81 YSVITDKDHQLTQDLQAEDIDPID---SKRPTVRGNQSPTVIDAVLPDIDSQLDPHKSFN 137 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 ++EG SN++ LT +IAE + + NPLFI+ G GKTHL+ AI K P Sbjct: 138 NYVEGDSNKMPLTIGLAIAEHPNKN----QFNPLFIYGPSGCGKTHLINAIGLKVKKLYP 193 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQHEFCHLL 284 RV+Y++A F ++ +++R N + + + ID+L++DD+Q ++ Q F H+ Sbjct: 194 QKRVLYVSARLFQVQYTNSVRTNTTNDFINFYQTIDVLIVDDIQEWMTATKTQDTFFHIF 253 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N L + K+++ A+DRPP +LE ++ R+ +R G+ L + ++ IL +++ Sbjct: 254 NHLFRNGKRIILASDRPPVDLEGMNDRLLTRFVAGLITELEKPNIQLCVDILHSKI---- 309 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNT 403 K D L I E V+ +A+T S R+L G N L+ + + + +A+ ++ V Sbjct: 310 KRD-GLIIPENVIQFIAQTANGSVRDLQGVINSLLAYSVVYNSSIDMRLAERVIKRAVKI 368 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + + + I+DI V H+N+++ + S R + +V RQVAMY+++ T IG+ Sbjct: 369 DD-EPLTIDDILDKVCNHFNVTQAAVNSRSRKKDIVIARQVAMYMAQKYTKMPASRIGKL 427 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 G RDH+TV+H+ K+E L+ D E+ Sbjct: 428 VGGRDHSTVIHSCAKIEDRLQVDKGFTAEL 457 >gi|298245521|ref|ZP_06969327.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] gi|297553002|gb|EFH86867.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] Length = 536 Score = 192 bits (489), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 119/346 (34%), Positives = 192/346 (55%), Gaps = 21/346 (6%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G L+SR+ F FI G SN++A A+ + +E Y NPLF++ VGLGKTHLL Sbjct: 193 GGQLNSRYTFDAFIVGKSNQLAHAASLAASENPGRIY-----NPLFLYGGVGLGKTHLLH 247 Query: 215 AIAN-ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ + +K L V+Y+T+E F +AIR + R ID+LL+DD+QF+ G Sbjct: 248 AVGHEGEVK---GLTVLYVTSEKFTNEIINAIRYQKTEEFRAKYRQIDILLVDDIQFIAG 304 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K + EF H NSL ++ KQ+V +DRPP + SL R+RSR + G+ + +YE R Sbjct: 305 KESTEEEFFHTFNSLHNANKQIVVTSDRPPKAIHSLQDRLRSRFEWGLLADVQPPEYEHR 364 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTA 390 +IL+++ + ++ V+ +VAR +S REL+GA N+++ + API T Sbjct: 365 LAILRSKTDLLH-----FSVPSAVVEYVARPECSSVRELEGALNRVIAYATLHNAPI-TV 418 Query: 391 EIADELLSHLVNTGE---TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 ++A + L ++ + + K+ + ++ V ++YN+ + +R R + PRQVAMY Sbjct: 419 QLATDALENIYSDKKPSAATKLSVSEVIDGVCRYYNVEAERIRGKQRDRDIAWPRQVAMY 478 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 L + T S +IG G RDHTT++H KV+ + ++ E+ Sbjct: 479 LMREETTASLQQIGAELGGRDHTTIMHGWEKVQGEMRQSDRVRHEI 524 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 12/122 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N I+ RL+ +V P+ + +WFQ S I +SV + F+K ++ R+ Sbjct: 1 MNARQIWQTAIERLQERVQPNTFTTWFQGTSADSFQDGIFVVSVSSTFVKTHLERRFTSL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL-SPINTNISKSPIILGKQTIS 151 I + + I G+E+ V+ V S +KT S L SP K P LG+ S Sbjct: 61 IRTILTD----ITGMEVEVQFVV--SRDKTTPEQSGEPLFSP-----PKRPSRLGRTRTS 109 Query: 152 PV 153 P Sbjct: 110 PA 111 >gi|171741734|ref|ZP_02917541.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC 27678] gi|306823996|ref|ZP_07457370.1| DNA-directed DNA replication initiator protein [Bifidobacterium dentium ATCC 27679] gi|309801964|ref|ZP_07696078.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium JCVIHMP022] gi|171277348|gb|EDT45009.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC 27678] gi|304552994|gb|EFM40907.1| DNA-directed DNA replication initiator protein [Bifidobacterium dentium ATCC 27679] gi|308221412|gb|EFO77710.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium JCVIHMP022] Length = 500 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/351 (35%), Positives = 192/351 (54%), Gaps = 22/351 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F TF+ G SNR A T A ++AE H + NPL I+ GLGKTHLL AI Sbjct: 156 LNKNATFDTFVPGDSNRFARTVALAVAEGSGHDF-----NPLCIYGGSGLGKTHLLNAIG 210 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKD---SLRNIDLLLIDDMQFLQ 272 N ++ + PNL+V Y+T+E F F A+ D + +K+ R +D+LLIDD+QFL Sbjct: 211 NYALVKDPNLKVRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLS 270 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D PP +L+ R+ SR + G++V + D E Sbjct: 271 GKEATLEQFFHTFNTLHQANKRIVIASDVPPKDLKGFQARLISRFESGLTVDVKPPDLET 330 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R +IL+ ++ NI +VL +A T + REL+GA N++ + A + Sbjct: 331 RIAILRMMATMNGS-----NIPNDVLNLIAERFTENIRELEGALNRVT---AMASLSNQP 382 Query: 392 IADELLSHLVNTGETKKMRIE--DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + L H + T + I+ DI VAK+++++ +D++ R + + RQVAMYL Sbjct: 383 VTRALAEHTLQDFFTSDVEIKPADIISQVAKYFHLTFDDIVGRSRTKNIALARQVAMYLV 442 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 + +T S +IG FG +DHTTV+HA ++ ++M E +EL RL Sbjct: 443 RELTSMSLNDIGLVFGGKDHTTVMHAYTRISDEMQEKQEIYNYVMELTVRL 493 >gi|111115264|ref|YP_709882.1| chromosomal replication initiator protein [Borrelia afzelii PKo] gi|216263632|ref|ZP_03435627.1| chromosomal replication initiator protein DnaA [Borrelia afzelii ACA-1] gi|123046987|sp|Q0SN72|DNAA_BORAP RecName: Full=Chromosomal replication initiator protein DnaA gi|110890538|gb|ABH01706.1| chromosomal replication initiator protein [Borrelia afzelii PKo] gi|215980476|gb|EEC21297.1| chromosomal replication initiator protein DnaA [Borrelia afzelii ACA-1] Length = 485 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 134/477 (28%), Positives = 249/477 (52%), Gaps = 47/477 (9%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESVGDNIKISTPNLFHKNQIEKRFTKKIK 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSV------EKTA---SSPSITKLSPINTNISKSPI-- 143 ++ ++ V I+ + + + EKT + P++ KL T +SK P+ Sbjct: 64 EILT--NNGYDNVTIVFTNQSPKTYSSKEESEKTTFNETFPTLDKLK--GTTLSKEPLQS 119 Query: 144 -------ILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + K+ F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 IKDRIKMYIKKEEEPKNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGTKY---- 175 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 176 -NPCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKK 234 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DRPPSEL + R++S Sbjct: 235 KYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRPPSELTNFTDRLKS 294 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A Sbjct: 295 RFTRGLNVDISKPNFELRVAIIEKKA-----EEDGIKVPKNILNLVAQKVTTNVRDLEAA 349 Query: 375 FNQLVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNI 424 +L ++ + EI + ++ T E + K+ IE+I++++ + I Sbjct: 350 VTKL---KAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNEPSNKINIENIKKILLRELKI 406 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 + D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ Sbjct: 407 AHKDIEGHSKKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDR 463 >gi|261879221|ref|ZP_06005648.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334170|gb|EFA44956.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 469 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 132/462 (28%), Positives = 237/462 (51%), Gaps = 33/462 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++ V +Y +WF+ + F + ++ + VP+ F+ +++ +++ + K+ Q H Sbjct: 16 IRKNVTDQIYTTWFKPIVFENFDEARKMILVQVPSPFVYEYLEENFVDLLGKVLQ--HCF 73 Query: 104 IQGVEILVRSVA-----LPSVEKTASSPSITKLSPINTNISKSPIILGK---QTISPVFG 155 GV + R V L + I K P T +++P +L Q I P Sbjct: 74 GAGVGLSYRVVTDKEHNLSQDIEGEPGGGIDKPLP-RTRANQAPTVLDAAKPQQIDP--- 129 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ FS +IEG+SN + + SIAE + T++ NP+FI+ G GKTHL+ A Sbjct: 130 -QLNPHLTFSNYIEGNSNMLPRSVGMSIAEHPN----TMQFNPMFIYGPSGCGKTHLVNA 184 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGK 274 I + + P RV+Y++A F ++ +A+ N + + ID+L++DD+Q ++ Sbjct: 185 IGVKAKQLYPQKRVLYISARLFQVQYTNAVLQNKLNDFIGFYQTIDMLIVDDIQEWVSAV 244 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q F H+ N L + K+++ A+DRPP EL+ + R+ +R G+ L + ++ Sbjct: 245 KTQETFFHIFNHLFRNGKRIILASDRPPIELKGMPDRLLTRFSCGLIAELEKPNEQLCID 304 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL++++ + D LNI +V+ +A+T + S R+L G N L+ +++ + +I Sbjct: 305 ILESKI----RRD-GLNIPHDVVQFIAQTASGSVRDLQGVINSLM---AYSIVYNCDIDM 356 Query: 395 ELLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 L ++ + + + I+DI V HYN++ + S R + VR RQV+MYL++ Sbjct: 357 RLAERVIKRAVKIDDEPLTIDDILDKVCVHYNVTAAQVNSKSRKQDFVRARQVSMYLAQK 416 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 T IG+ G+RDH+TVLH+ +VEK L+ D E+ Sbjct: 417 YTKMPASRIGKLVGNRDHSTVLHSCSQVEKRLKADKAFGAEL 458 >gi|296118604|ref|ZP_06837182.1| DNA-directed DNA replication initiator protein [Corynebacterium ammoniagenes DSM 20306] gi|295968503|gb|EFG81750.1| DNA-directed DNA replication initiator protein [Corynebacterium ammoniagenes DSM 20306] Length = 381 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/346 (34%), Positives = 189/346 (54%), Gaps = 14/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F+ GSSNR A AA ++AE + Y NPLFI GLGKTHLL A Sbjct: 41 LNPTHTFDNFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAG 95 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + LRV Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Sbjct: 96 NYAQLLHKGLRVKYVSSEEFTNDYINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKEST 155 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 156 QEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL 215 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + ++ VL +A +S REL+GA ++ S PI E+A+ Sbjct: 216 MKKASAD-----GTTVDRAVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-NIEMAE 269 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L L +++ I + A+ +NI L + + R + RQ+AMYL + +T Sbjct: 270 VALRDLAPDSAAEQITPNTIIEVTAEFFNIDVATLTGSGKKRDIAHARQLAMYLCRELTD 329 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P++G +FG +DHTTV++A RK+ + + E++ L + I Sbjct: 330 LSLPKLGEQFGGKDHTTVMYAERKIRREMTEKRETYDEIQALTQRI 375 >gi|298373770|ref|ZP_06983759.1| DNA replication initiator protein, ATPase [Bacteroidetes oral taxon 274 str. F0058] gi|298274822|gb|EFI16374.1| DNA replication initiator protein, ATPase [Bacteroidetes oral taxon 274 str. F0058] Length = 458 Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 134/484 (27%), Positives = 251/484 (51%), Gaps = 38/484 (7%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +D+ +CL V +K+ + + +WF+ + S ++ + L VPT F Sbjct: 5 IDLWNKCLGV------------IKDNISDSAFTTWFKPIIPLSYINKEIVLQVPTMFFYE 52 Query: 84 WIKNRYLETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISK- 140 +I+ +Y + ++ + +I E +L+ V + T + TK + T K Sbjct: 53 YIEEKYSDLLSATIK----KITSCEDTVLLYRVLMDKENNTTTDVPTTKKAQSTTQTQKI 108 Query: 141 -SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 SP + T+ S L + F +IEG SN++ +A ++A+ + G T NPL Sbjct: 109 VSPF---ENTVDVNIDSQLIEHYTFDNYIEGRSNKLVRSAGINVAQ--NPGKTM--FNPL 161 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI + G+GKTH+ AI +R PN RV+Y++A F ++ A+R N N + ++ Sbjct: 162 FIFGNSGVGKTHVSNAIGLEVKRRFPNKRVLYVSANLFELQYTDAVRYNNKNNFLNFYQS 221 Query: 260 IDLLLIDDM-QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D+L+IDD+ QF+ Q F ++ + + KQ++ DR PSEL ++ R+ +R + Sbjct: 222 LDVLIIDDIHQFMSKPGTQSTFFNIFDHIHRLGKQIILTCDRQPSELNGMEERLLTRFRW 281 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++ + D E+R +IL++++ ++ L+ E+V+ +A +T + R+L+GA L Sbjct: 282 GLTAEITKPDIELRKNILRHKI-----KENGLHFPEDVVCFIAENITENIRDLEGAVISL 336 Query: 379 VFRHSFAPILTAEIADELLSHLVNT--GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 + + + I +I+ EL +++ + KK+ + I +V +HY++S L S R Sbjct: 337 L---AHSTINNEDISIELAKKIIDITPKDKKKVNVGYICDIVCEHYSLSAETLNSKSRKA 393 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 V + RQ+AMYLS+ T +S I G R H TV+H+ + +E +++ D L +++++L Sbjct: 394 EVAQARQIAMYLSRKHTSQSLDSIATTIGGRTHATVIHSCKLIENLIKQDKHLLQDIQIL 453 Query: 497 KRLI 500 + I Sbjct: 454 EEKI 457 >gi|219685250|ref|ZP_03540070.1| chromosomal replication initiator protein DnaA [Borrelia garinii Far04] gi|219673346|gb|EED30365.1| chromosomal replication initiator protein DnaA [Borrelia garinii Far04] Length = 485 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 133/480 (27%), Positives = 249/480 (51%), Gaps = 43/480 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLYFLESIGDNIQISTPNLFHKNQIEKRFTKKIK 63 Query: 95 KLFQEEHSRIQGVEILVRS------VALPSVEKTASSPSITKLSPINTN-ISKSPI---- 143 ++ + + V I+ + + EKT + ++ + N +SK PI Sbjct: 64 EILTK--NGYNNVTIVFTNQPPKTYSSKQESEKTTFNETLQNFDKLKGNTLSKEPIQSIK 121 Query: 144 -----ILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + K+ F +P L R+ F FI G +NR+A A+ SI++ Y N Sbjct: 122 DHIKMYIKKEEEPTNFKNPFLKKRYTFENFIIGPNNRLAYNASLSISKNPGKKY-----N 176 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 P I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 177 PCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKKKY 236 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR Sbjct: 237 RYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKSRF 296 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G++V + ++E+R +I++ + E+ + + +++L VA+ VTT+ R+L+ A Sbjct: 297 TRGLNVDISKPNFELRVAIIEKKA-----EEDGIKVPKDILNLVAQKVTTNVRDLEAAVT 351 Query: 377 QLVFRHSFAPILTAEIADELLSHLV---------NTGE-TKKMRIEDIQRMVAKHYNISR 426 +L ++ + EI +++ ++ T E + K+ IE+I++++ + I+ Sbjct: 352 KL---KAYIDLDNIEIDIDIVEKIIKEIIIYEKDTTNEPSNKINIENIKKILLRELKIAH 408 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 409 KDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNND 468 >gi|23465223|ref|NP_695826.1| chromosomal replication initiation protein [Bifidobacterium longum NCC2705] gi|189440298|ref|YP_001955379.1| chromosomal replication initiation protein [Bifidobacterium longum DJO10A] gi|227547513|ref|ZP_03977562.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622843|ref|ZP_04665874.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133632|ref|YP_004000971.1| dnaa [Bifidobacterium longum subsp. longum BBMN68] gi|317482359|ref|ZP_07941379.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp. 12_1_47BFAA] gi|322688192|ref|YP_004207926.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis 157F] gi|322690194|ref|YP_004219764.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JCM 1217] gi|38257643|sp|Q8G6K0|DNAA_BIFLO RecName: Full=Chromosomal replication initiator protein DnaA gi|226735779|sp|B3DP22|DNAA_BIFLD RecName: Full=Chromosomal replication initiator protein DnaA gi|23325851|gb|AAN24462.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum NCC2705] gi|189428733|gb|ACD98881.1| ATPase for DNA replication initiation [Bifidobacterium longum DJO10A] gi|227212028|gb|EEI79924.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514840|gb|EEQ54707.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772890|gb|ADQ02378.1| DnaA [Bifidobacterium longum subsp. longum BBMN68] gi|316916239|gb|EFV37641.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp. 12_1_47BFAA] gi|320455050|dbj|BAJ65672.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JCM 1217] gi|320459528|dbj|BAJ70148.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis 157F] Length = 500 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 23/373 (6%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 E + P+ P+ + P+ G+Q ++ + L+ F F +F+ G SNR A T Sbjct: 121 ESYGAKPAAAPREPMPATEPQFPV--GQQKMNRDPETHLNKNFTFDSFVPGDSNRFARTV 178 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A ++AE + NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E F Sbjct: 179 ALAVAEGSGQDF-----NPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTN 233 Query: 240 RFASAIRD-----NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 F A+++ R +D+LLIDD+QFL GK +F H N+L + K+ Sbjct: 234 EFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHQANKR 293 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V A+D P L+ + R+ SR + G++V + D E R +IL+ +++ + P Sbjct: 294 IVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIASMNGSKIPS---- 349 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRI 411 +VL +A T + REL+GA ++ S + P+ T +A++ L T +++ Sbjct: 350 -DVLDLIAERFTENIRELEGALTRVTAVASLSNQPV-TRALAEQTLQDFFTT--DVEIKP 405 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 DI VAK+++++ DL+ R + V PRQ+AMYL++ MT S +IG+ FG RDHTT Sbjct: 406 TDIISQVAKYFHLTFEDLVGKSRTKNVAVPRQIAMYLAREMTSMSLMDIGQVFGGRDHTT 465 Query: 472 VLHAVRKVEKMLE 484 V+HA ++ ++ Sbjct: 466 VMHACTRISDRMQ 478 >gi|315639363|ref|ZP_07894525.1| DNA-directed DNA replication initiator protein [Campylobacter upsaliensis JV21] gi|315480689|gb|EFU71331.1| DNA-directed DNA replication initiator protein [Campylobacter upsaliensis JV21] Length = 439 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 124/462 (26%), Positives = 237/462 (51%), Gaps = 45/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK + + Y ++ LKF+ L + P FL +I+ +Y E I +++ + Sbjct: 10 LKKDLKEEEYKNYITHLKFNEKQSKADSLIFNAPNEFLAKFIQTKYAEKIAYIYEAQSGN 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + I S T S +T I + I + ++P F Sbjct: 70 KAKISI----------------QSQTHKSKNSTKIDIAHIKMQSTILNP--------SFT 105 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A +++++ D G NP+FI+ GLGKTHLLQA+ NA ++ Sbjct: 106 FDSFVVGGSNQYAYATCKAVSQKDKLGKL---YNPIFIYGPTGLGKTHLLQAVGNACLEM 162 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S I + ++ +N D+LLIDD+QFL GK IQ +F Sbjct: 163 GK--KVIYATSENFINDFNSHIINKTMDKFQEKYQNCDVLLIDDVQFL-GKTDKIQEKFF 219 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + D + Q++ +D PP+ L+ + R++SR G+ + E + +I++ + Sbjct: 220 FIFNEIRDQSGQIIMTSDNPPNMLKGITDRLKSRFANGIIADITPPQLETKIAIIRKKCE 279 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 ++ +N++ E++ ++A + + RE++G L ++++ ++ EI+ E ++ Sbjct: 280 FNE-----VNLSNEIISYLATAMGDNIREIEGMITNL---NAYSRLINQEISLEFAKEMM 331 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + IEDI +V+K +N+ +D+ S +R + +V R++ ++L++ +T S P Sbjct: 332 KDHIKEKKENITIEDILSIVSKEFNLKTSDIKSTKRTQNIVLARRIIIFLARELTSLSMP 391 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H ++K+ +M+E + LK ++E LK I Sbjct: 392 QLAVYFEMKDHTAISHNIKKINEMIEENHHLKSKIEELKNKI 433 >gi|294630338|ref|ZP_06708898.1| chromosomal replication initiator protein DnaA [Streptomyces sp. e14] gi|292833671|gb|EFF92020.1| chromosomal replication initiator protein DnaA [Streptomyces sp. e14] Length = 643 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/360 (35%), Positives = 205/360 (56%), Gaps = 24/360 (6%) Query: 151 SPVFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +P G P L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GL Sbjct: 294 APGPGEPTARLNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGL 348 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL AI + + P RV Y+++E F F ++IRD + + R +D+LL+DD Sbjct: 349 GKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDD 408 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFL K Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + Sbjct: 409 IQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQP 468 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 + E R +IL+ + Q LN EVL +A ++ + REL+GA L+ +FA Sbjct: 469 PELETRIAILRKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFAS 520 Query: 387 I----LTAEIADELLSHLVNTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + + + + +L L+ GE T ++ I A ++ ++ +DL R R +V Sbjct: 521 LNRQPVDLGLTEIVLKDLIPGGEDSTPEITATAIMASTADYFGLTVDDLCGTSRGRQLVT 580 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 581 ARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 640 >gi|303235975|ref|ZP_07322578.1| chromosomal replication initiator protein DnaA [Prevotella disiens FB035-09AN] gi|302483848|gb|EFL46840.1| chromosomal replication initiator protein DnaA [Prevotella disiens FB035-09AN] Length = 468 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 135/461 (29%), Positives = 239/461 (51%), Gaps = 32/461 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSV---LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +K+ V +A+WF+ + F H I+ + VP+ F+ +++ Y++ + K+ Sbjct: 16 IKDNVTEQQFATWFEPILFEMFDKDTHTIL-VQVPSLFIYEYLEENYVDLLNKVITRVFG 74 Query: 103 RIQGVEILVRSVA--LPSVEKTASSPSI----TKLSPINTNISKSPIILGKQTISPVFGS 156 + G+ + R V ++ + S ++ TKL N S +P+ + Q I S Sbjct: 75 K--GIRLNYRVVTDKAHNLTQDLQSENVEHVETKLPTNRGNQSPTPLDIAPQEID----S 128 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LD FS +IEG SN++ + SIAE H TT + NP+FI+ G GKTHL+ AI Sbjct: 129 QLDLHKSFSNYIEGDSNKLPRSIGLSIAE---HPNTT-QFNPMFIYGPSGCGKTHLINAI 184 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKL 275 + P RV+Y++A F ++ +++ +N + + ID+L++DD+Q ++ Sbjct: 185 GLKIKQLYPQKRVLYISARLFQVQYTNSVLNNTTNDFIGFYQTIDVLIVDDIQEWITSIK 244 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q F H+ N L + K++V A DRPP EL+ ++ R+ +R G+ L + ++ I Sbjct: 245 TQDTFFHIFNHLFMNGKRIVLACDRPPVELKGMNDRLLTRFSCGLIAELEKPNIQLCIDI 304 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L +++ K D LNI +EV+ +A+T S R+L G N L+ +++ + + + Sbjct: 305 LNSKI----KRD-GLNIPDEVVQFIAQTANGSVRDLQGIINSLL---AYSVVYNSNVDMR 356 Query: 396 LLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L ++ + + + I++I V H+N++ N + S R + +V RQV+MYL++ Sbjct: 357 LAERVIKRAVKIDDEPLTIDEILDKVCAHFNVTTNAVNSRSRKQDIVLARQVSMYLAQKF 416 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 T IG+ G RDH+TVLH+ ++EK LE D E+ Sbjct: 417 TKMPAKRIGKLVGGRDHSTVLHSCSQIEKRLEVDKGFNAEL 457 >gi|57506229|ref|ZP_00372148.1| chromosomal replication initiator protein DnaA [Campylobacter upsaliensis RM3195] gi|57015497|gb|EAL52292.1| chromosomal replication initiator protein DnaA [Campylobacter upsaliensis RM3195] Length = 439 Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/462 (26%), Positives = 240/462 (51%), Gaps = 45/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYLETITKLFQEEHSR 103 LK + + Y ++ LKF+ L + P FL +I+ +Y E I +++ + Sbjct: 10 LKKDLKEEEYKNYITHLKFNEKQSKADSLIFNAPNEFLAKFIQTKYAEKIAYIYEAQSGN 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 +IL++S +T S + K+ + + + L+ F Sbjct: 70 --KAKILIQS-------QTHKSKNSAKIDIAHIKMQ---------------STILNPSFT 105 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F +F+ G SN+ A +++++ D G NP+FI+ GLGKTHLLQA+ NA ++ Sbjct: 106 FDSFVVGGSNQYAYATCKAVSQKDKLGKL---YNPIFIYGPTGLGKTHLLQAVGNACLEM 162 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 +V+Y T+E F+ F S I + ++ +N D+LLIDD+QFL GK IQ +F Sbjct: 163 GK--KVIYATSENFINDFNSHIINKTMDKFQEKYQNCDVLLIDDVQFL-GKTDKIQEKFF 219 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N + D + Q++ +D PP+ L+ + R++SR G+ + E + +I++ + Sbjct: 220 FIFNEIRDQSGQIIMTSDNPPNMLKGITDRLKSRFANGIIADITPPQLETKIAIIRKKCE 279 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 ++ +N++ E++ ++A + + RE++G L ++++ ++ EI+ E ++ Sbjct: 280 FNE-----VNLSNEIISYLATAMGDNIREIEGMITNL---NAYSRLINQEISLEFAKEMM 331 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + IEDI +V+K +N+ +D+ S +R + +V R++ ++L++ +T S P Sbjct: 332 KDHIKEKKENITIEDILSIVSKEFNLKTSDIKSTKRTQNIVLARRIIIFLARELTSLSMP 391 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ F +DHT + H ++K+ +M+E + LK ++E LK I Sbjct: 392 QLAVYFEMKDHTAISHNIKKINEMIEENHHLKNKIEELKNKI 433 >gi|119025019|ref|YP_908864.1| chromosomal replication initiation protein [Bifidobacterium adolescentis ATCC 15703] gi|154486346|ref|ZP_02027753.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis L2-32] gi|118764603|dbj|BAF38782.1| chromosomal replication initiator protein DnaA [Bifidobacterium adolescentis ATCC 15703] gi|154084209|gb|EDN83254.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis L2-32] Length = 499 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 117/335 (34%), Positives = 187/335 (55%), Gaps = 21/335 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F TF+ G SNR A T A ++AE H + NPL I+ GLGKTHLL AI Sbjct: 155 LNKNATFDTFVPGDSNRFARTVALAVAEGSGHDF-----NPLCIYGGSGLGKTHLLNAIG 209 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKD---SLRNIDLLLIDDMQFLQ 272 N ++ + PNL+V Y+T+E F F A+ D + +K+ R +D+LLIDD+QFL Sbjct: 210 NYALVKDPNLKVRYVTSEEFTNEFIEALADTNQSSGQIKEFNRRYREVDVLLIDDIQFLS 269 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D PP +L+ + R+ SR + G++V + D E Sbjct: 270 GKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPDLET 329 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ ++ NI +V +A T + REL+GA N++ S + P+ T Sbjct: 330 RIAILRMIATMNGS-----NIPNDVFNLIAERFTENIRELEGALNRVTAMASLSNQPV-T 383 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A++ L T +++ DI VAK++ ++ +D++ R + + RQ+AMYL Sbjct: 384 KALAEQTLQDFFTTD--VEIKPADIITQVAKYFYLTFDDIVGRSRTKKIALARQIAMYLV 441 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + +T S +IG FG +DHTTV+HA ++ ++ Sbjct: 442 RELTSMSLNDIGLVFGGKDHTTVMHAYTRINDEMQ 476 >gi|284988630|ref|YP_003407184.1| chromosomal replication initiator protein DnaA [Geodermatophilus obscurus DSM 43160] gi|284061875|gb|ADB72813.1| chromosomal replication initiator protein DnaA [Geodermatophilus obscurus DSM 43160] Length = 584 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/350 (35%), Positives = 205/350 (58%), Gaps = 19/350 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++VF +F+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 244 LNPKYVFDSFVIGNSNRFAHAAAVAVAEAPARAY-----NPLFIYGDSGLGKTHLLHAIG 298 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ-GKLI 276 + + + PN+RV Y++ E F F + + A + + R+ID LLIDD+QFL+ + Sbjct: 299 HYAARMFPNVRVRYVSTEEFTNEFINLVHSGRAEDFRRRYRDIDFLLIDDIQFLERAERT 358 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +++KQ+V +DR P +L +L+ R+R+R + G+ + D E R +IL Sbjct: 359 QEEFFHTFNTLHNASKQIVITSDRAPKKLTTLEDRLRTRFEWGLITDVQAPDLETRIAIL 418 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + A ++ L + + VL +A V T+ REL+GA L+ +FA + ++ Sbjct: 419 RKK-AYGER----LQVPDPVLEFIASKVQTNIRELEGA---LIRVTAFASLNKQQVDLPL 470 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L++ + ++ I A++++++ +L + R RT+V RQ+AMYL + + Sbjct: 471 AELVLKDLISDEQGPQITAAIIMAATAEYFSVTMEELQGSNRSRTLVNARQIAMYLCREL 530 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML-ETDITLKKEVELLKRLIS 501 T S P IG FG +DHTTV+HAV+K+ ++ E T + EL R+ S Sbjct: 531 TELSLPRIGASFGGKDHTTVMHAVKKITNLMSERRATYTQVTELTARIKS 580 >gi|225352379|ref|ZP_03743402.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156886|gb|EEG70255.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 530 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 190/335 (56%), Gaps = 23/335 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F TF+ G SNR A T A ++AE H + NPL I+ GLGKTHLL AI Sbjct: 188 LNKNATFDTFVPGDSNRFARTVALAVAEGSGHDF-----NPLCIYGGSGLGKTHLLNAIG 242 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKD---SLRNIDLLLIDDMQFLQ 272 N ++ + P L+V Y+T+E F F A+ D + +K+ R +D+LLIDD+QFL Sbjct: 243 NYALVKDPTLKVRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLS 302 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D PP +L+ + R+ SR + G++V + D E Sbjct: 303 GKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPDLET 362 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ I+ N+ ++VL +A T + REL+GA N++ S + P+ Sbjct: 363 RIAILR---MIAHG----TNVQDDVLNLIAERFTENIRELEGALNRVTAMASLSGQPVTR 415 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A++ L +T +++ DI VAK++ I+ +D++ R + + RQ+AMYL Sbjct: 416 A-LAEQTLQDFFST--DVEIKPTDIITQVAKYFYITFDDIVGRSRTKKIALARQIAMYLV 472 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + +T S +IG+ FG +DHTTV+HA ++ ++ Sbjct: 473 RELTSMSLNDIGQVFGGKDHTTVMHAYTRISDEMQ 507 >gi|289450862|ref|YP_003474445.1| chromosomal replication initiator protein DnaA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185409|gb|ADC91834.1| chromosomal replication initiator protein DnaA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 438 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/323 (32%), Positives = 178/323 (55%), Gaps = 12/323 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++ F F FI GSSN A A S+A+ + NPLF++ GLGKTHLL AI Sbjct: 102 INPAFTFDNFIVGSSNAHAHAACVSVAQ------NSRVFNPLFLYGGSGLGKTHLLHAIG 155 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + QP ++Y+ E F+ F IR+N + + RN D+LLIDD+QF++ K + Sbjct: 156 NYVKQHQPEKHIIYVPCEQFVNEFIRTIRENSYDSFRQKYRNCDMLLIDDIQFIESKEQM 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF N+L ++ ++ D+PP L SL+ R+R+R GV V + + ++E R +IL Sbjct: 216 QIEFFSTFNALTENGSNIIMTCDKPPHSLSSLEERLRTRFASGVIVDINIPNFETRVAIL 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + R E + ++ ++L ++A +S REL+GAF ++ + L +A Sbjct: 276 QKR-----AEFLNIQVSYDILEYIAHNFVSSIRELEGAFTTVISYSYISGKLDLSVAKAA 330 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L++L++ + K M E I +VA+++N + +++ S + + + RQV MYL + + Sbjct: 331 LNNLISPSKRKSMTPETIIPIVARYFNFTEDEIKSKNKNKDLAIARQVTMYLLTKHSDLT 390 Query: 457 FPEIGRRFGDRDHTTVLHAVRKV 479 + +IG+ G + H+TV++ K+ Sbjct: 391 YEQIGKIIGGKHHSTVMYGFNKI 413 >gi|50953926|ref|YP_061214.1| chromosomal replication initiator protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|61212563|sp|Q6AHN6|DNAA_LEIXX RecName: Full=Chromosomal replication initiator protein DnaA gi|50950408|gb|AAT88109.1| chromosomal replication initiator protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 473 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/348 (34%), Positives = 201/348 (57%), Gaps = 19/348 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F F+ G SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 134 LNSKYSFDNFVIGQSNRFAHAAAVAVAEAPAKAY-----NPLFIYGDSGLGKTHLLHAIG 188 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + ++ P +RV Y+++E F F ++I +N + + RNID+LLIDD+QFLQ + Sbjct: 189 HYAMSLYPGIRVRYVSSEEFTNDFINSIANNRGSSFQARYRNIDILLIDDIQFLQRAVET 248 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q F H N+L D KQVV +D PP L + R+RSR + G+ + + D E R +IL Sbjct: 249 QEAFFHTFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGLITDVQVPDLETRIAIL 308 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +Q E K+ + +++L +A ++++ REL+G L+ +FA + + + Sbjct: 309 RKK---AQSE--KIQVPDDILEFMASKISSNIRELEGT---LIRVTAFASLNRTPVDMPL 360 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 +L L+ + + DI A+++ ++ +DL + R + V RQ+AMYL + + Sbjct: 361 VQTVLKDLITLDDDNVIAPTDIITNTAEYFKLTVDDLYGSSRSQAVATARQIAMYLCREL 420 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 T S P+IG+ FG RDHTTV++A +K+ ++++ ++ +V EL R+ Sbjct: 421 TNLSLPKIGQLFGGRDHTTVMYANKKISELMKERRSIYNQVTELTSRI 468 >gi|119714273|ref|YP_921238.1| chromosomal replication initiator protein DnaA [Nocardioides sp. JS614] gi|119534934|gb|ABL79551.1| chromosomal replication initiator protein DnaA [Nocardioides sp. JS614] Length = 528 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 122/331 (36%), Positives = 190/331 (57%), Gaps = 18/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ GSSNR AA ++AE Y NPL ++ GLGKTHLL AI Sbjct: 187 LNPKYTFETFVIGSSNRFPHAAAVAVAEAPGKAY-----NPLLVYGDSGLGKTHLLHAIG 241 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + +V Y+++E F F +AIRD+ K R++D+LLIDD+QFL+GK Sbjct: 242 HYVRSLYTGAKVRYVSSEEFTNEFINAIRDDRQDRFKRRYRDVDVLLIDDIQFLEGKTQT 301 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V +DR P LE+L+ R+R+R + G+ + D E R +IL Sbjct: 302 QEEFFHTFNTLHNANKQIVLTSDRAPKRLEALEDRLRNRFEWGLITDVQPPDLETRIAIL 361 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + A+ +L +VL +A + T+ REL+GA L+ +FA + E+ Sbjct: 362 RKKAAMD-----RLTAPPDVLEFIASKIQTNIRELEGA---LIRVTAFANLNRQEVDMTL 413 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ G ++ I A ++ +S ++L R R +V RQ+AMYL + + Sbjct: 414 AEIVLKDLIPEGGEPEITAALIIAQTAAYFGLSIDELTGPSRGRHLVMARQIAMYLCREL 473 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG +FG+RDHTTV++A RK+ ++L Sbjct: 474 TDLSLPKIGAQFGNRDHTTVMYADRKINQLL 504 >gi|154508239|ref|ZP_02043881.1| hypothetical protein ACTODO_00733 [Actinomyces odontolyticus ATCC 17982] gi|153797873|gb|EDN80293.1| hypothetical protein ACTODO_00733 [Actinomyces odontolyticus ATCC 17982] Length = 476 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 138/450 (30%), Positives = 231/450 (51%), Gaps = 29/450 (6%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 +++GP V S + + + + L+VP +F K WI+++ +T R + Sbjct: 20 DELGP-VATSMLRSARPLGDIEGTILLAVPNDFTKQWIEDKAQSKLTTALSVHLGRTVRI 78 Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTNISK----SPIILGKQTISPVFGSP--LDSR 161 I V + E+ +P+ +P ++ SP ++ +P P L+ + Sbjct: 79 AITVDPTLVVVTEEEEPTPAAPADAPTSSTDEDEEHHSPALV----TAPTDSGPTHLNPK 134 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F TF+ G SNR A AA + +E + NPLFI+ GLGKTHLLQAI + ++ Sbjct: 135 FTFDTFVIGPSNRFAHAAALAASETPGTAF-----NPLFIYGDSGLGKTHLLQAIGHNAL 189 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQGKLI 276 P+L+V Y+ +E F F +AIR N N R +D+LLIDD+QF+ K Sbjct: 190 SMMPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQ 249 Query: 277 QHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 E F H N+L + KQ+V +D PP++L+ + R+RSR G+ V + D E R +I Sbjct: 250 TVEGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAI 309 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIAD 394 L + + L + EV +VA ++++ REL+GA ++ + + + +A Sbjct: 310 LHKK-----ADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQ 364 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L V+ + ++ + I A ++ ++ + S+ R VV RQ+AMYL + +T Sbjct: 365 MMLKDFVSNPDDNEITVSLIMSQCAVYFGVTIEQMGSSERSHNVVEARQIAMYLCRELTD 424 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 S P+IG+ FG RDHTTV+HA +K+ K+++ Sbjct: 425 LSLPKIGQAFG-RDHTTVMHANKKISKLMK 453 >gi|289177770|gb|ADC85016.1| DnaA [Bifidobacterium animalis subsp. lactis BB-12] Length = 587 Score = 191 bits (485), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 127/339 (37%), Positives = 186/339 (54%), Gaps = 25/339 (7%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S F TFI+G SNR A T A ++AE Y NPL I+ GLGKTHLL AI Sbjct: 241 LNSNDTFDTFIQGDSNRFARTVALAVAEGSGRDY-----NPLCIYGGSGLGKTHLLHAIG 295 Query: 218 NASIKRQ-PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-------RNIDLLLIDDMQ 269 N +++ Q P RV+Y+T+E F F +IR + N ++ R +D+LLIDD+Q Sbjct: 296 NYAVQNQKPRPRVLYVTSEEFTNDFIESIRTSGQDNEDPAMEKFYRKYREVDVLLIDDIQ 355 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK I +F H NSL + K++V A+D PP LE + R+ SR + G++V + + Sbjct: 356 FLGGKRGILEQFFHTFNSLYQANKRIVIASDVPPHNLEDFEDRLISRFEQGITVDVKPPN 415 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--AP 386 E R +IL R+ Q + + +VL +A + REL+GA +++ S P Sbjct: 416 LETRIAIL--RMLAEQNH---IRVPNDVLNLIAERFANNVRELEGALKRVIAMASLNHQP 470 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + A L E K DI VAK+++++ +D++ R R+V RQ+AM Sbjct: 471 VTRALTERTLQDFFTTDVEVKPT---DIIARVAKYFHLTFDDIVGPGRPRSVTLARQIAM 527 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLE 484 YL++ MT S IG+ FG RDHTTV+HA + + +KM E Sbjct: 528 YLTRDMTSMSLMNIGQIFGGRDHTTVMHACKHIADKMQE 566 >gi|183602668|ref|ZP_02964032.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis HN019] gi|219682500|ref|YP_002468883.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis AD011] gi|241190067|ref|YP_002967461.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195473|ref|YP_002969028.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254777887|sp|B8DV06|DNAA_BIFA0 RecName: Full=Chromosomal replication initiator protein DnaA gi|183218086|gb|EDT88733.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis HN019] gi|219620150|gb|ACL28307.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis AD011] gi|240248459|gb|ACS45399.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250027|gb|ACS46966.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793054|gb|ADG32589.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis V9] Length = 583 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 127/339 (37%), Positives = 186/339 (54%), Gaps = 25/339 (7%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S F TFI+G SNR A T A ++AE Y NPL I+ GLGKTHLL AI Sbjct: 237 LNSNDTFDTFIQGDSNRFARTVALAVAEGSGRDY-----NPLCIYGGSGLGKTHLLHAIG 291 Query: 218 NASIKRQ-PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-------RNIDLLLIDDMQ 269 N +++ Q P RV+Y+T+E F F +IR + N ++ R +D+LLIDD+Q Sbjct: 292 NYAVQNQKPRPRVLYVTSEEFTNDFIESIRTSGQDNEDPAMEKFYRKYREVDVLLIDDIQ 351 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK I +F H NSL + K++V A+D PP LE + R+ SR + G++V + + Sbjct: 352 FLGGKRGILEQFFHTFNSLYQANKRIVIASDVPPHNLEDFEDRLISRFEQGITVDVKPPN 411 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--AP 386 E R +IL R+ Q + + +VL +A + REL+GA +++ S P Sbjct: 412 LETRIAIL--RMLAEQNH---IRVPNDVLNLIAERFANNVRELEGALKRVIAMASLNHQP 466 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + A L E K DI VAK+++++ +D++ R R+V RQ+AM Sbjct: 467 VTRALTERTLQDFFTTDVEVKPT---DIIARVAKYFHLTFDDIVGPGRPRSVTLARQIAM 523 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLE 484 YL++ MT S IG+ FG RDHTTV+HA + + +KM E Sbjct: 524 YLTRDMTSMSLMNIGQIFGGRDHTTVMHACKHIADKMQE 562 >gi|51598691|ref|YP_072879.1| chromosomal replication initiator protein [Borrelia garinii PBi] gi|61212541|sp|Q661I4|DNAA_BORGA RecName: Full=Chromosomal replication initiator protein DnaA gi|51573262|gb|AAU07287.1| chromosomal replication initiator protein [Borrelia garinii PBi] Length = 484 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 135/479 (28%), Positives = 246/479 (51%), Gaps = 42/479 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIQISTPNLFHKNQIEKRFTKKIK 63 Query: 95 KLFQEEHSRIQGVEILVRS------VALPSVEKTASSPSITKLSPINTN-ISKSPIILGK 147 ++ + + V I+ + + EKT ++ + N +SK PI K Sbjct: 64 EILTK--NGYNNVTIVFTNQPPKTYSSKQESEKTTFKETLQNFDKLKGNTLSKEPIQSIK 121 Query: 148 QTIS-------PV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 I P F +P L R+ F FI G +NR+A A+ SI++ Y NP Sbjct: 122 DRIKMYIKEEEPTNFKNPFLKKRYTFENFIIGPNNRLAYNASLSISKNPGKKY-----NP 176 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K R Sbjct: 177 CLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKKKYR 236 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR Sbjct: 237 YLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKSRFT 296 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G++V + ++E+R +I++ + E+ + + +++L VA+ VTT+ R+L+ A + Sbjct: 297 RGLNVDISKPNFELRVAIIEKKA-----EEDGIKVPKDILNLVAQKVTTNVRDLEAAVTK 351 Query: 378 LVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNISRN 427 L ++ + EI + ++ T E + K+ IE+I++++ + I+ Sbjct: 352 L---KAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNESSNKINIENIKKILLRELKIAHK 408 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 409 DIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNND 467 >gi|29830859|ref|NP_825493.1| chromosomal replication initiation protein [Streptomyces avermitilis MA-4680] gi|38257424|sp|Q82FD8|DNAA_STRAW RecName: Full=Chromosomal replication initiator protein DnaA gi|29607972|dbj|BAC72028.1| putative replication initiator protein [Streptomyces avermitilis MA-4680] Length = 653 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 133/395 (33%), Positives = 212/395 (53%), Gaps = 28/395 (7%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVF----GSP---LDSRFVFSTFIEGSS 172 + + S + + P+ + + S G P G P L+ +++F TF+ G+S Sbjct: 269 DSSPGSGHVHRGGPVGSALPASSGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGAS 328 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR A AA ++AE + Y NPLFI+ GLGKTHLL AI + + P RV Y+ Sbjct: 329 NRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYV 383 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 ++E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ Sbjct: 384 SSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNAN 443 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Q LN Sbjct: 444 KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-----LN 498 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETK 407 EVL +A ++ + REL+GA L+ +FA + + + + +L L+ GE Sbjct: 499 APPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDS 555 Query: 408 KMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 I I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG +FG Sbjct: 556 APEITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFG 615 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 616 GRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 650 >gi|302520514|ref|ZP_07272856.1| chromosomal replication initiator protein DnaA [Streptomyces sp. SPB78] gi|302429409|gb|EFL01225.1| chromosomal replication initiator protein DnaA [Streptomyces sp. SPB78] Length = 679 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 199/350 (56%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 340 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 394 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 395 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKEST 454 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 455 QEEFFHTFNTLHNANKQIVLSSDRPPRQLVTLEDRLRNRFEWGLTTDVQPPELETRIAIL 514 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 515 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 566 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ + DL + R R +V RQ+AMYL + Sbjct: 567 TEIVLKDLIPGGEDASPEITASAIMSATADYFGQTVEDLCGSSRSRVLVTARQIAMYLCR 626 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 627 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 676 >gi|333025720|ref|ZP_08453784.1| putative chromosomal replication initiation protein [Streptomyces sp. Tu6071] gi|332745572|gb|EGJ76013.1| putative chromosomal replication initiation protein [Streptomyces sp. Tu6071] Length = 699 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 199/350 (56%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 360 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 414 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 415 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKEST 474 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL Sbjct: 475 QEEFFHTFNTLHNANKQIVLSSDRPPRQLVTLEDRLRNRFEWGLTTDVQPPELETRIAIL 534 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 535 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 586 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ + DL + R R +V RQ+AMYL + Sbjct: 587 TEIVLKDLIPGGEDASPEITASAIMSATADYFGQTVEDLCGSSRSRVLVTARQIAMYLCR 646 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 647 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 696 >gi|212715149|ref|ZP_03323277.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM 16992] gi|212661830|gb|EEB22405.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/335 (35%), Positives = 190/335 (56%), Gaps = 23/335 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F TF+ G SNR A T A ++AE H + NPL I+ GLGKTHLL AI Sbjct: 149 LNKNATFDTFVPGDSNRFARTVALAVAEGSGHDF-----NPLCIYGGSGLGKTHLLNAIG 203 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKD---SLRNIDLLLIDDMQFLQ 272 N ++ + P+L+V Y+T+E F F A+ D + +K+ R +D+LLIDD+QFL Sbjct: 204 NYALVKDPSLKVRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLS 263 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D PP +L+ + R+ SR + G++V + D E Sbjct: 264 GKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPDLET 323 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ I+ + N+ ++VL +A T + REL+GA N++ S + P+ Sbjct: 324 RIAILR---MIAHES----NVQDDVLNLIAERFTENIRELEGALNRVTAMASLSGQPVTR 376 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A+ L T +++ DI VAK++ I+ +D++ R + + RQ+AMYL Sbjct: 377 A-LAEHTLQDFFATD--VEIKPTDIITQVAKYFYITFDDIVGRSRTKKIALARQIAMYLV 433 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + +T S +IG+ FG +DHTTV+HA ++ ++ Sbjct: 434 RELTSMSLNDIGQVFGGKDHTTVMHAYTRISDEMQ 468 >gi|291438517|ref|ZP_06577907.1| chromosomal replication initiator protein [Streptomyces ghanaensis ATCC 14672] gi|291341412|gb|EFE68368.1| chromosomal replication initiator protein [Streptomyces ghanaensis ATCC 14672] Length = 648 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 27/394 (6%) Query: 120 EKTASSPSITKLSPINTNI--SKSPIILGKQTISPVF-GSP---LDSRFVFSTFIEGSSN 173 E S + + P+ N+ + +P L Q G P L+ +++F TF+ G+SN Sbjct: 265 EPPPGSGHVHRGGPVGPNLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASN 324 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A AA ++AE + Y NPLFI+ GLGKTHLL AI + + P RV Y++ Sbjct: 325 RFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVS 379 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ K Sbjct: 380 SEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANK 439 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Q LN Sbjct: 440 QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-----LNA 494 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKK 408 EVL +A ++ + REL+GA L+ +FA + + + + +L L+ G+ Sbjct: 495 PPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGLTEIVLKDLIPGGDDSA 551 Query: 409 MRIED--IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 I I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG FG Sbjct: 552 PEITSTAIMSATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGALFGG 611 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 612 RDHTTVMHADRKIRNLMAERRSIYNQVTELTNRI 645 >gi|320095107|ref|ZP_08026816.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977974|gb|EFW09608.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 483 Score = 191 bits (484), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 135/440 (30%), Positives = 219/440 (49%), Gaps = 41/440 (9%) Query: 68 LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS 127 + + L+VP F K+WI++R +T R + I V PS+ P Sbjct: 39 IEGTILLAVPNAFTKSWIEDRASNQLTAALTASLGRTVRIAITVD----PSISAVTEEPK 94 Query: 128 ITKLSPINTNISKSPIIL------GKQTISPVFGSP-------LDSRFVFSTFIEGSSNR 174 + + QT + S L+ ++ F TF+ G SNR Sbjct: 95 PEPPAASPLAPAAPASSPLARPAPAPQTGPALVSSAQNGGLTHLNPKYTFETFVIGPSNR 154 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A AA +++E + NPLFI+ GLGKTHLL AI + ++ P+L+V Y+ + Sbjct: 155 FAHAAALAVSETPGTSF-----NPLFIYGDSGLGKTHLLHAIGHYALSLLPHLKVRYVNS 209 Query: 235 EYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLL 288 E F F +AIR N N R +D+LLIDD+QF+ K E F H N+L Sbjct: 210 EEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTVEGFFHTFNALY 269 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 ++ KQ+V +D PP++L + R+RSR G+ V + D E R +IL+ + Sbjct: 270 ENNKQIVLTSDVPPAQLNGFEDRMRSRFASGLLVDVQPPDLETRIAILQKKATTD----- 324 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTG 404 L + +VL ++A ++++ REL+GA +++ +FA + + +A+ LL V+ Sbjct: 325 SLEVTPDVLEYIASRISSNIRELEGALLRVI---AFANLSKERIDLPLAEMLLKDFVSDP 381 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 ++ + I A ++ I+ + S+ R TVV RQ+AMYL + +T S P+IG+ F Sbjct: 382 TDNEVTVPLIMGQCAHYFGITIEQMSSSDRSHTVVEARQIAMYLCRELTDLSLPKIGQAF 441 Query: 465 GDRDHTTVLHAVRKVEKMLE 484 G RDHTTV+HA +K+ +++ Sbjct: 442 G-RDHTTVMHANKKITALMK 460 >gi|160932427|ref|ZP_02079817.1| hypothetical protein CLOLEP_01262 [Clostridium leptum DSM 753] gi|156868386|gb|EDO61758.1| hypothetical protein CLOLEP_01262 [Clostridium leptum DSM 753] Length = 438 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 117/355 (32%), Positives = 194/355 (54%), Gaps = 18/355 (5%) Query: 146 GKQTISPVFGSPLDSR--FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 G++ +P +DS F F T+I GSSN+ A A+ ++A + Y NPLFI+ Sbjct: 87 GEKKAAPNDNLAIDSEYEFTFDTYIVGSSNKFAHAASLAVAANPAGAY-----NPLFIYG 141 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + GLGKTHLL AI N + P + +Y+ + F AI+ R D+L Sbjct: 142 NSGLGKTHLLYAICNDLKRSHPEMTTLYIKGDDFTNELIDAIQHGTTSTFHQKYRKTDVL 201 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+QF+ GK Q EF H NSL ++ KQ+V +DRPP E+++L+ R+R+R + G+ Sbjct: 202 LVDDIQFIAGKDSTQEEFFHTFNSLYEAKKQIVLTSDRPPKEIQTLEDRLRTRFEWGLIA 261 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL---V 379 + D+E R +I+K + E L + +V ++A + T+ R+L+GA ++ Sbjct: 262 DIQPPDFETRIAIIKRK-----AEALDLELPGDVCEYIATRLKTNIRQLEGAVKKMKANW 316 Query: 380 FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + AP + A +S ++N + + +E I V + + +S +D+ S++R + Sbjct: 317 LLNGDAPTMAN--AQTAISDILNNDQPPPLTVEKIIEEVGRTFGVSPDDIRSSKRSANIS 374 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RQ+A+Y+ + +T S IG FG RDH+TV++AV++VEK ++ D K VE Sbjct: 375 NARQIAVYVVREITQLSMTTIGEEFGGRDHSTVVYAVQQVEKNMKKDSKTKAMVE 429 >gi|319778796|ref|YP_004129709.1| Chromosomal replication initiator protein DnaA [Taylorella equigenitalis MCE9] gi|317108820|gb|ADU91566.1| Chromosomal replication initiator protein DnaA [Taylorella equigenitalis MCE9] Length = 520 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 114/351 (32%), Positives = 191/351 (54%), Gaps = 17/351 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIA-EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ R F + G SN +A AQ++ + HGY NPLFI+ GLGKTH++ AI Sbjct: 179 LNQRLTFQNLVVGDSNELAYVTAQNVVRNIGKHGY-----NPLFIYGKTGLGKTHIMHAI 233 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---DSLRNIDLLLIDDMQ-FLQ 272 N + V+Y+ AE + + + + + + N DLLL+DD+Q F + Sbjct: 234 GNELFTKHKMRNVLYIHAETYYTEITRRMIEGRWVEYRAQDNKYINSDLLLMDDVQLFAR 293 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 + Q EF L +L+++ KQVV + D P L++++ R++SR Q G+ + + D E+R Sbjct: 294 KERTQQEFFVLYEALVNNDKQVVISCDTFPDNLDAIEDRLKSRFQNGLIIEIEPPDVELR 353 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTA 390 SILK++ K+ P + +EV +++A + ++ REL+GA +++ F I T Sbjct: 354 VSILKSK----AKDFPDMEFTDEVALYIASNIKSNVRELEGALQKVMAYSQFKQIDKPTV 409 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + L ++ + +E+IQ+ VA +Y I +D+ S R +V+ R VAMYL+K Sbjct: 410 DTCKAALRDVLRQ-RNGSLTVENIQKTVADYYKIRISDIYSKSRSANLVKARHVAMYLTK 468 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG+ FG RDH+T+ HAV K+ D L ++ +L++++ Sbjct: 469 ELTRNSLPEIGQSFGGRDHSTIHHAVEKIASRRREDRQLNHDIRVLEQILG 519 >gi|290959004|ref|YP_003490186.1| chromosomal replication initiator protein [Streptomyces scabiei 87.22] gi|260648530|emb|CBG71641.1| chromosomal replication initiator protein [Streptomyces scabiei 87.22] Length = 674 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 199/350 (56%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 335 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 389 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 390 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKEST 449 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 450 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 509 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 510 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 561 Query: 393 ADELLSHLVNTGETKKMRIED--IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ DL R R +V RQ+AMYL + Sbjct: 562 TEIVLKDLIPGGENASPEITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCR 621 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG+RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 622 ELTDLSLPKIGAQFGNRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 671 >gi|111020655|ref|YP_703627.1| chromosomal replication initiation protein [Rhodococcus jostii RHA1] gi|123144805|sp|Q0SAG7|DNAA_RHOSR RecName: Full=Chromosomal replication initiator protein DnaA gi|110820185|gb|ABG95469.1| DNA-directed DNA replication initiator protein [Rhodococcus jostii RHA1] Length = 528 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 118/334 (35%), Positives = 199/334 (59%), Gaps = 19/334 (5%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L++++ F TF+ GSSNR A AA +IAE + Y NPLF+ + GLGKTHLL Sbjct: 186 GNSLNAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAY-----NPLFVWGASGLGKTHLLH 240 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A + + + P +RV Y++ E F F +++RD+ + K R D+LL+DD+QF++GK Sbjct: 241 AAGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFIEGK 300 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 301 EGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRI 360 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LT 389 +IL + + +L + ++VL +A + + REL+GA L+ +FA + L Sbjct: 361 AILSKKARMD-----RLEVPDDVLELIASRIERNIRELEGA---LIRVTAFASLNRQPLD 412 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A+ +L L+ + ++ I + A+++N+S +DL + R + RQ++MYL Sbjct: 413 LTLAEVVLRDLMPDSSSLEINAATIMAVTAEYFNMSIDDLCGPGKARPLASARQISMYLC 472 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + +T S P+IG+ FG RDHTTV++A +K+ K + Sbjct: 473 RELTDLSLPKIGQTFG-RDHTTVMYADKKIRKEM 505 >gi|302552694|ref|ZP_07305036.1| chromosomal replication initiator protein DnaA [Streptomyces viridochromogenes DSM 40736] gi|302470312|gb|EFL33405.1| chromosomal replication initiator protein DnaA [Streptomyces viridochromogenes DSM 40736] Length = 663 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 215/394 (54%), Gaps = 27/394 (6%) Query: 120 EKTASSPSITKLSPINTNI--SKSPIILGKQTISPVF-GSP---LDSRFVFSTFIEGSSN 173 E S + + P+ N+ + +P L Q G P L+ +++F TF+ G+SN Sbjct: 280 EPPPGSGHVHRGGPVGPNLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASN 339 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A AA ++AE + Y NPLFI+ GLGKTHLL AI + + P RV Y++ Sbjct: 340 RFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVS 394 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ K Sbjct: 395 SEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANK 454 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Q LN Sbjct: 455 QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-----LNA 509 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGE--T 406 EVL +A ++ + REL+GA L+ +FA + + + + +L L+ G+ T Sbjct: 510 PPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGLTEIVLKDLIPGGDDAT 566 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 ++ I A ++ ++ DL + R R +V RQ+AMYL + +T S P+IG FG Sbjct: 567 PEITSTAIMSATADYFGLTVEDLCGSSRGRQLVTARQIAMYLCRELTDLSLPKIGALFGG 626 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 627 RDHTTVMHADRKIRNLMAERRSIYNQVTELTNRI 660 >gi|239930175|ref|ZP_04687128.1| chromosomal replication initiation protein [Streptomyces ghanaensis ATCC 14672] Length = 638 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 27/394 (6%) Query: 120 EKTASSPSITKLSPINTNI--SKSPIILGKQTISPVF-GSP---LDSRFVFSTFIEGSSN 173 E S + + P+ N+ + +P L Q G P L+ +++F TF+ G+SN Sbjct: 255 EPPPGSGHVHRGGPVGPNLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASN 314 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A AA ++AE + Y NPLFI+ GLGKTHLL AI + + P RV Y++ Sbjct: 315 RFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVS 369 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ K Sbjct: 370 SEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANK 429 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Q LN Sbjct: 430 QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-----LNA 484 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKK 408 EVL +A ++ + REL+GA L+ +FA + + + + +L L+ G+ Sbjct: 485 PPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGLTEIVLKDLIPGGDDSA 541 Query: 409 MRIED--IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 I I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG FG Sbjct: 542 PEITSTAIMSATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGALFGG 601 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 602 RDHTTVMHADRKIRNLMAERRSIYNQVTELTNRI 635 >gi|154248706|ref|YP_001409531.1| chromosomal replication initiator protein DnaA [Fervidobacterium nodosum Rt17-B1] gi|154152642|gb|ABS59874.1| chromosomal replication initiator protein DnaA [Fervidobacterium nodosum Rt17-B1] Length = 444 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 133/456 (29%), Positives = 221/456 (48%), Gaps = 35/456 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S LK ++ + SWF SV+ N V V F+K +I+ ++ + I K+ E Sbjct: 10 SLLKERISRQQWESWFIDFTVKSVIENHVIFEVGNMFIKGYIEKKFDKIIRKVLYEVLGP 69 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 EI+ V V + + K PV +P+ SR+ Sbjct: 70 NSTYEIVYAQVQKDEVANNDNGALVRK--------------------RPVLITPVSSRYT 109 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 FS F+ N++A T A+ NP+FI++ G+GKTHL+QA N ++ Sbjct: 110 FSNFVVEEFNQLAYTILLESAK------KLGTFNPIFIYSKAGMGKTHLVQAFGNYLLEN 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQHEFC 281 P++R YLT+E FM + ++ ++ R +D+L+IDD+QFL GK +Q E Sbjct: 164 DPDIRFAYLTSEAFMNELIAKLKAGTVEEFREKYRKKVDVLVIDDIQFLAGKKGVQIELF 223 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L ++ KQ++ +DR P EL+ R+ SR Q GV V + E + I K + Sbjct: 224 HTFNTLYEAGKQIIVCSDRSPKELKDFQDRVISRFQMGVVVEIKNPSVEAMYRIAKKIV- 282 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 ED K +I++++L +VA+ S R L GA +L+ S L A +L + Sbjct: 283 ----EDEKADISDDILNYVAKHFKGSIRILKGAIIKLIAYKSMYKDLDVATARLILKDFL 338 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 T E + DI +VA+++ +S+ DLLSN++ + +V R +AMY+ S +I Sbjct: 339 -TEEEENHEQNDIISIVARYFKLSKEDLLSNKKSKNIVVARHLAMYILSTKFQMSSRKIA 397 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + H TVL+ ++ E LE D +++ ++L++ Sbjct: 398 TLL-KKSHPTVLNGIKATENRLENDPEIRQILKLIE 432 >gi|78776202|ref|YP_392517.1| chromosomal replication initiation protein [Sulfurimonas denitrificans DSM 1251] gi|123768675|sp|Q30UP9|DNAA_SULDN RecName: Full=Chromosomal replication initiator protein DnaA gi|78496742|gb|ABB43282.1| chromosomal replication initiator protein, DnaA [Sulfurimonas denitrificans DSM 1251] Length = 435 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 127/437 (29%), Positives = 226/437 (51%), Gaps = 58/437 (13%) Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE-KTASSPSITKLSPI 134 VP + + +WIKNRY I LF+ ++S V IL+++ VE K A S+ K Sbjct: 43 VPNSLVLSWIKNRYSSKIKHLFEIQNSIKVDVSILLKN----QVESKKAEQKSVQKQQH- 97 Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 S L+ F F+ G SN+ A A +S++E V Sbjct: 98 ---------------------SLLNPSHTFENFMVGGSNQFAYAAVKSVSE-----KAGV 131 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLFIH VGLGKTHL+QA N + Q + V+Y T E F+ F +R+ + Sbjct: 132 LYNPLFIHGGVGLGKTHLMQAAGNV-FQNQGKV-VIYTTVEQFLNDFIRHVRNKTMERFQ 189 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + R D+LLIDD+QFL K IQ EF H +L KQ++ AD+ P ++ L+ R++ Sbjct: 190 EKYRKCDVLLIDDIQFLSNKEGIQEEFFHTFEALKGVGKQIILTADKHPKKIAGLEKRLQ 249 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR + G+ + + E + +I++N+ I+ K+ + ++++ ++A + ++ RE++G Sbjct: 250 SRFEHGLVADIQPPELETKIAIIENKCKIN-----KVILTKDIIHYIATVIESNVREIEG 304 Query: 374 AFNQLVFRHSFAPILTAEI---------ADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++L H+++ ++ +I D+L + N + ++ I + VAK NI Sbjct: 305 ILSKL---HAYSQLMHVDIDLQFTKNVLKDQLQENRAN------LTLDIITQNVAKDLNI 355 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 +++ S R + +V R++A+YL + +T + P++ + FG +DHT + H ++K+ ++++ Sbjct: 356 KPSEIRSKGRSKNLVYARRIAIYLCRELTQNTMPQLAQYFGMQDHTAISHTLKKIGELMQ 415 Query: 485 TDITLKKEVELLKRLIS 501 D K ++E L I+ Sbjct: 416 NDEDFKVKIEELTNKIT 432 >gi|149173671|ref|ZP_01852300.1| chromosomal replication initiation protein [Planctomyces maris DSM 8797] gi|148847201|gb|EDL61535.1| chromosomal replication initiation protein [Planctomyces maris DSM 8797] Length = 505 Score = 190 bits (482), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 140/470 (29%), Positives = 233/470 (49%), Gaps = 26/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY--- 89 V ES V L QVG Y +WF + N++ + V + FL W++ ++ Sbjct: 28 VTTESDEQAVFRLLAQQVGQRSYQNWFAGKVSLKLEANLLIMGVASPFLLTWMQKKFSSE 87 Query: 90 --LETITKLFQEEHSRIQGVEILVRSVALPSVEKTA---SSPSITKLSPINTNISKSPII 144 I + R + +L R + A ++ + + S N++ I Sbjct: 88 INATAIACIGPAAEYRFEVDPVLARQELSSKGQADAARVTAETADRKSLTNSDQKSERID 147 Query: 145 LGKQTISPVFGSPLDSRFV--FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 G + P +P R STFI G SN++A A Q +E Y NPLFIH Sbjct: 148 GGHKPTQP---APYKGRRFADLSTFITGKSNQLAYMATQQASEQPGALY-----NPLFIH 199 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHLL+ ++ P+L+VV+LTAE F F+ A+++ + RN+D+ Sbjct: 200 GGVGLGKTHLLEGFYRKIRQQYPSLQVVFLTAESFGNYFSKALQERSLPGFRQRFRNVDV 259 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 L+IDD+ F + K Q E H + L +Q++ ++DR P L + + +R G+ Sbjct: 260 LIIDDIDFFESKHNFQEELLHTIKHLESHGRQLIFSSDRHPRLLTKMSEELTTRFLSGLV 319 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + E+R I + R Q + P I + L +VAR + + REL+GA N L Sbjct: 320 CRVESPETELRLQIARQRAL--QLKTP---ITDGALEYVARRFSHNVRELEGAMNCLQTW 374 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 H +T +A ++L+ L + ++++DI+++V + IS DL S+RR R V + Sbjct: 375 HVMTKQKITTTMARQVLADLERDC-IRIIKMDDIKQIVCTTFGISEADLKSSRRSRNVSQ 433 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 PR +AM+L++ +T ++ EIG FG R+H+TV+ A +KV + L+ +++ Sbjct: 434 PRMLAMFLARKLTQAAYSEIGDFFGGRNHSTVMFAEKKVRQWLKNQDSIR 483 >gi|154174998|ref|YP_001407305.1| chromosomal replication initiation protein [Campylobacter curvus 525.92] gi|166201871|sp|A7GVR3|DNAA_CAMC5 RecName: Full=Chromosomal replication initiator protein DnaA gi|112803521|gb|EAU00865.1| chromosomal replication initiator protein DnaA [Campylobacter curvus 525.92] Length = 436 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 132/463 (28%), Positives = 233/463 (50%), Gaps = 48/463 (10%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 L ++ P+ Y + ++LKF+ + V + P + +IK +Y I LF+ Sbjct: 10 LSAEISPNEYEYYIKQLKFNEKASSDETVVFNAPNELIAKFIKTKYATKIAHLFE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 V++ P+VE T TKL N I + T+ L+ + Sbjct: 65 -------VKTGTKPNVEITTQ----TKLKSSKQNQVNIKQIKAQSTL-------LNPAYT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G SN A +A++ +E Y NPLFI+ GLGKTHLLQ++ N + + Sbjct: 107 FENFVVGGSNEYAFLSAKAASEQPGKIY-----NPLFIYGPTGLGKTHLLQSVGNFCLNQ 161 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 V+ +T+E FM F I ++ ++ RN D+LLIDD+QFL GK IQ EF Sbjct: 162 GK--VVICVTSEQFMTDFTYNINNHSMERFREKYRNCDVLLIDDVQFL-GKTDKIQEEFF 218 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L Q+V +DR P L+ + R+R+R + G+ + + + + +I++ + Sbjct: 219 HTFNELHSKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIMADITPPELDTKIAIIQKKC- 277 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELL 397 E K+ +N++V+ ++A + + RE++ A L +++A ++ EI A ++ Sbjct: 278 ----EFDKIYLNKDVINYIATNMGDNIREIESAIINL---NAYANLMRQEITLDFAKNVM 330 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 L+ + + + +E+I +V+K NI +D+ S RV+ +V R++ +YL+K++T S Sbjct: 331 RDLIKE-KRENINLENIIEVVSKELNIKPSDIKSKSRVQNIVEARRIVIYLAKMLTTNSM 389 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+I F +DH+ V H ++K+ +++E + V LK I Sbjct: 390 PQIANYFSMKDHSAVSHNIKKINELIENNEIFNLRVSELKNKI 432 >gi|319949431|ref|ZP_08023492.1| chromosomal replication initiation protein [Dietzia cinnamea P4] gi|319436893|gb|EFV91952.1| chromosomal replication initiation protein [Dietzia cinnamea P4] Length = 501 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 123/360 (34%), Positives = 203/360 (56%), Gaps = 18/360 (5%) Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + +S L+ R+ FS F++G+SNR A AA ++AE + Y NPLFI GL Sbjct: 150 EALSAATAPGLNERYTFSAFVQGNSNRFARAAALAVAEAPARAY-----NPLFIWGESGL 204 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL AI + S++ +V Y++ E F F +++RD K R D+LL+DD Sbjct: 205 GKTHLLHAIGHYSLRMYSEQKVKYVSTEEFTNDFINSVRDGRQNMFKKRYREADILLVDD 264 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFL GK +Q EF H N++ ++ KQ+V ++DRPP +L+ L+ R+R+R + G+ + Sbjct: 265 IQFLIGKEQVQEEFFHTFNTIHNAQKQIVISSDRPPKQLQPLEDRLRTRFEWGLITDIQP 324 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 + E R +IL + P+ +VL +A V + REL+GA ++V +FA Sbjct: 325 PELETRIAILDKKAKSENYVVPR-----DVLELIATRVQRNIRELEGALIRVV---AFAS 376 Query: 387 ILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + EI A+ +L +V+ ++ ++ I + A+ ++ S ++L + R++ R R Sbjct: 377 LNGHEIDVPLAEIVLRDVVSDDDSLQISAATIMAVTAEFFSTSIDELCGTSKTRSLSRAR 436 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AMYL + +T S P+IG FG +DHTTV++A RK+ K ++ D +++ L I E Sbjct: 437 QIAMYLCRELTDLSLPKIGVTFGGKDHTTVMYAQRKILKEIKDDRRTYDQIQELTARIKE 496 >gi|170287808|ref|YP_001738046.1| chromosomal replication initiator protein DnaA [Thermotoga sp. RQ2] gi|226735861|sp|B1LC08|DNAA_THESQ RecName: Full=Chromosomal replication initiator protein DnaA gi|170175311|gb|ACB08363.1| chromosomal replication initiator protein DnaA [Thermotoga sp. RQ2] Length = 440 Score = 189 bits (481), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 135/428 (31%), Positives = 210/428 (49%), Gaps = 39/428 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K +V + WF S+ N V SV F+K W++ +Y ++K Sbjct: 9 IKTRVNRKSWELWFSSFDVKSIEGNKVVFSVGNLFIKEWLEKKYYSVLSK---------- 58 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V++++ + A + A P + P+ + K ++L +PL+ + F Sbjct: 59 AVKVVLGNDATFEITYEAFEPHSSYSEPL---VKKRAVLL----------TPLNPDYTFE 105 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ G N A AA +A+ R NPLFI+ VGLGKTHLLQ+I N ++ +P Sbjct: 106 NFVVGPGNSFAYHAALEVAKHPG------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP 159 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQHEFCHL 283 +LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q E H Sbjct: 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHT 219 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N L DS KQ+V +DR P +L R+ SR Q G+ L D E R SI + L I Sbjct: 220 FNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE 279 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADELLSHLVN 402 E P EEVL VA V + R L GA + LV++ + + + A LL + Sbjct: 280 HGELP-----EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFIK 334 Query: 403 TGETKKMR-IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + K M I+++ +VAK SR ++LSN R + R++ MY++K S I Sbjct: 335 SNRVKAMDPIDELIEIVAKVTGASREEILSNSRNVKALTARRIGMYVAKNYLKSSLRTIA 394 Query: 462 RRFGDRDH 469 +F +R H Sbjct: 395 EKF-NRSH 401 >gi|302559666|ref|ZP_07312008.1| chromosomal replication initiator protein DnaA [Streptomyces griseoflavus Tu4000] gi|302477284|gb|EFL40377.1| chromosomal replication initiator protein DnaA [Streptomyces griseoflavus Tu4000] Length = 652 Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 215/394 (54%), Gaps = 27/394 (6%) Query: 120 EKTASSPSITKLSPINTNI--SKSPIILGKQTISPVF-GSP---LDSRFVFSTFIEGSSN 173 E S + + P+ N+ + +P L Q G P L+ +++F TF+ G+SN Sbjct: 269 EPPPGSGHVHRGGPVGPNLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASN 328 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A AA ++AE + Y NPLFI+ GLGKTHLL AI + + P RV Y++ Sbjct: 329 RFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVS 383 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ K Sbjct: 384 SEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANK 443 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Q LN Sbjct: 444 QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-----LNA 498 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGE--T 406 EVL +A ++ + REL+GA L+ +FA + + + + +L L+ G+ T Sbjct: 499 PPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGLTEIVLKDLMPGGDDST 555 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 ++ I A ++ ++ DL + R R +V RQ+AMYL + +T S P+IG FG Sbjct: 556 PEITSTAIMGATADYFGLTVEDLCGSSRGRQLVTARQIAMYLCRELTDLSLPKIGALFGG 615 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 616 RDHTTVMHADRKIRNLMAERRSIYNQVTELTNRI 649 >gi|288929563|ref|ZP_06423407.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329068|gb|EFC67655.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 469 Score = 189 bits (481), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 137/461 (29%), Positives = 232/461 (50%), Gaps = 29/461 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITK-LFQEEHS 102 + V P + +WF+ + F S + ++ L VP++F+ +I+ Y++ +++ LF Sbjct: 16 IAQNVSPQQFDTWFKPIVFESFNNETKLLVLRVPSSFVYEYIEEHYIDLLSRVLFSAFGQ 75 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 RI+ L V + S K T +K+ K P LD + Sbjct: 76 RIR----LTYRVVVDSEHKKTQDIEADPAEAHATQAAKTWGAKQKAVEEPAKEQELDPQL 131 Query: 163 ----VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 FS +IEG SN+++ + S+AE H T + NP+FI+ G GKTHL+ AI Sbjct: 132 NPHQTFSNYIEGESNKLSRSVGLSVAE---HPNTN-QFNPMFIYGPSGCGKTHLVNAIGV 187 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQ 277 + + P RV+Y++A F +F +A+ N + + ID+L++DD+Q + Q Sbjct: 188 QTKQLYPQKRVLYISAHLFQVQFVNAVLKNATNDFIKFYQTIDMLIVDDVQTWASADKTQ 247 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 F H+ N L + K+++ A+DRPP EL + R+ +R G+ L + ++ IL Sbjct: 248 ETFFHIFNHLFRNGKRIILASDRPPVELNEMSDRLITRFSCGIIAELEKPNVQLCVDILN 307 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----A 393 ++ + D L I EV +A T S R+L+G N L+ +++ + ++I A Sbjct: 308 AKI----RRD-GLKIPAEVTQFIAETANGSVRDLEGVINSLM---AYSVVYNSDIDMRLA 359 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + ++ V +T + ++DI V+ H+N+S + + S R R +V PRQV+MYL++ T Sbjct: 360 ERVIKRAVKVDDTP-LTVDDILEKVSNHFNVSVSAVSSKSRKRDLVVPRQVSMYLAQKYT 418 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 IG+ G RDH+TVLH+ +VE L+TD EVE Sbjct: 419 KMPASRIGKLVGGRDHSTVLHSCAQVEARLKTDSLFAAEVE 459 >gi|226303490|ref|YP_002763448.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis PR4] gi|229491154|ref|ZP_04384982.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis SK121] gi|259645258|sp|C0ZLE1|DNAA_RHOE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|226182605|dbj|BAH30709.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis PR4] gi|229321892|gb|EEN87685.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis SK121] Length = 520 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 197/331 (59%), Gaps = 19/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++++ F TF+ GSSNR A AA +IAE + Y NPLFI + GLGKTHLL A Sbjct: 181 LNAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAY-----NPLFIWGASGLGKTHLLHAAG 235 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + P +RV Y++ E F F +++RD+ + K R D+LL+DD+QF++GK I Sbjct: 236 HYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGI 295 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 296 QEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAIL 355 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +L + +VL +A + + REL+GA L+ +FA + L + Sbjct: 356 SKKARMD-----RLEVPHDVLELIASRIERNIRELEGA---LIRVTAFASLNRQPLDLTL 407 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ + ++ I + A+++N+S +DL + R + + RQ++MYL + + Sbjct: 408 AEVVLRDLMPDSSSLEINAATIMAVTAEYFNMSIDDLCGPGKARPLAQARQISMYLCREL 467 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG+ FG RDHTTV++A +K+ K + Sbjct: 468 TDLSLPKIGQTFG-RDHTTVMYADKKIRKEM 497 >gi|226362895|ref|YP_002780675.1| chromosomal replication initiation protein [Rhodococcus opacus B4] gi|254777911|sp|C1B7S7|DNAA_RHOOB RecName: Full=Chromosomal replication initiator protein DnaA gi|226241382|dbj|BAH51730.1| chromosomal replication initiator protein DnaA [Rhodococcus opacus B4] Length = 528 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 197/331 (59%), Gaps = 19/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++++ F TF+ GSSNR A AA +IAE + Y NPLFI + GLGKTHLL A Sbjct: 189 LNAKYTFDTFVIGSSNRFAHAAAVAIAEAPARAY-----NPLFIWGASGLGKTHLLHAAG 243 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + P +RV Y++ E F F +++RD+ + K R D+LL+DD+QF++GK I Sbjct: 244 HYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGI 303 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 304 QEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAIL 363 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + +L + ++VL +A + + REL+GA L+ +FA + L + Sbjct: 364 SKKARMD-----RLEVPDDVLELIASRIERNIRELEGA---LIRVTAFASLNRQPLDLTL 415 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ + ++ I + A+++N+S +DL + R + RQ++MYL + + Sbjct: 416 AEVVLRDLMPDSSSLEINAATIMAVTAEYFNMSIDDLCGPGKARPLASARQISMYLCREL 475 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG+ FG RDHTTV++A +K+ K + Sbjct: 476 TDLSLPKIGQTFG-RDHTTVMYADKKIRKEM 505 >gi|256374161|ref|YP_003097821.1| chromosomal replication initiation protein [Actinosynnema mirum DSM 43827] gi|255918464|gb|ACU33975.1| chromosomal replication initiator protein DnaA [Actinosynnema mirum DSM 43827] Length = 577 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 195/331 (58%), Gaps = 18/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A AA ++AE + Y NPLFI GLGKTHLL A+ Sbjct: 228 LNEKYNFDTFVIGASNRFAHAAAVAVAEAPARAY-----NPLFIWGESGLGKTHLLHAVG 282 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + P +RV Y++ E F F +++RD+ + + R+ID+LL+DD+QFL+GK Sbjct: 283 HYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDIDVLLVDDIQFLEGKEGT 342 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S KQ+V ++DRPP LE+L+ R+R+R + G+ + + E R +IL Sbjct: 343 QEEFFHTFNTLHNSNKQIVVSSDRPPKRLETLEDRLRTRFEWGLITDIQPPELETRIAIL 402 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + A +D +L EVL +A V + REL+GA L+ +FA + + ++ Sbjct: 403 RKKAA----QD-RLAAPAEVLEFIAARVVRNIRELEGA---LIRVTAFASLNRQPVDVQL 454 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ ++ I + A+ + ++ DL + + + RQ++MYL + + Sbjct: 455 AEIVLRDLIPDSHVPEITAPTIMAVTAEFFEVTIEDLCGPGKTKVLSTARQISMYLCREL 514 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG+ FG RDHTTV++A +K+ K + Sbjct: 515 TDLSLPKIGQTFGGRDHTTVMYADKKIRKEM 545 >gi|221218113|ref|ZP_03589579.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 72a] gi|224533619|ref|ZP_03674208.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi CA-11.2a] gi|225548587|ref|ZP_03769634.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 94a] gi|225549615|ref|ZP_03770581.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 118a] gi|221192061|gb|EEE18282.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 72a] gi|224513292|gb|EEF83654.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi CA-11.2a] gi|225369892|gb|EEG99339.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 118a] gi|225370617|gb|EEH00053.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 94a] Length = 486 Score = 189 bits (480), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 134/479 (27%), Positives = 245/479 (51%), Gaps = 40/479 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFTKKIK 63 Query: 95 K-LFQEEHSRIQGV--------EILVRSVALPSVEKTASS-----PSITKLSPINTNISK 140 + L + ++ I V + P++ +T S T PI + Sbjct: 64 EILIKNGYNNIVIVFTNQPPKTHFNKQETKNPALNETFSKFDKLKEKTTSKEPIQNIQDR 123 Query: 141 SPIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + + K+ P F +P L R+ F FI GS+N++A A+ SI++ Y NP Sbjct: 124 IKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGSNNKLAYNASLSISKNPGKKY-----NP 178 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K R Sbjct: 179 CLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKKFKKKYR 238 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR Sbjct: 239 YLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKSRFT 298 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L+ A + Sbjct: 299 RGLNVDISKPNFELRAAIVEKKA-----EEDGINVPKNILNLVAQKVTTNVRDLEAAVTK 353 Query: 378 LVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNISRN 427 L ++ + EI + ++ T E K+ IE+I++++ + I+ Sbjct: 354 L---KAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKITHK 410 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 411 DIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNND 469 >gi|302346167|ref|YP_003814465.1| chromosomal replication initiator protein DnaA [Prevotella melaninogenica ATCC 25845] gi|302150481|gb|ADK96742.1| chromosomal replication initiator protein DnaA [Prevotella melaninogenica ATCC 25845] Length = 468 Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 128/459 (27%), Positives = 234/459 (50%), Gaps = 28/459 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K V + +WF+ + S + + VP+ F+ +++ Y++ + K+ Sbjct: 16 IKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEGHYVDLLRKVLTRVFG- 74 Query: 104 IQGVEILVRSVA-----LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 QGV++ R + L + + I+ P ++SP +L T+ S L Sbjct: 75 -QGVQLTYRVMVDQENHLSQDLEQDTVEDISSQRP-TARANQSPTVL--DTVPQDLDSQL 130 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D FS ++EG SN++ + SIAE H TT + NP+FI+ G GKTHL+ AI Sbjct: 131 DPHKSFSNYVEGDSNKLPRSIGLSIAE---HPNTT-QFNPMFIYGPSGCGKTHLVNAIGL 186 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQ 277 + + P RV+Y++A F ++ ++R N + + + ID+L++DD+Q ++ Q Sbjct: 187 KAKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDILIVDDIQEWVTATKTQ 246 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L + ++ IL Sbjct: 247 DTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKPNVQLCVDILH 306 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELL 397 +++ K D LNI E+V+ +A T S R+L G N L+ +++ + + I L Sbjct: 307 SKI----KRD-GLNIPEDVVRFIAETANGSVRDLQGVINSLL---AYSVVYNSNIDMRLA 358 Query: 398 SHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++ + + + I+DI V HYN++ + + S R + +V RQV+MY+++ T Sbjct: 359 ERVIKRAVKIDDEPLTIDDILDKVCTHYNVTMSAVNSRSRKKDIVMARQVSMYMAQKYTK 418 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 IG+ G+RDH+TV+H+ K+E L+ D E+ Sbjct: 419 MPASRIGKLVGNRDHSTVIHSCSKIEDRLKVDKGFHAEI 457 >gi|32141219|ref|NP_733620.1| chromosomal replication initiation protein [Streptomyces coelicolor A3(2)] gi|118710|sp|P27902|DNAA_STRCO RecName: Full=Chromosomal replication initiator protein DnaA gi|153240|gb|AAA26734.1| DnaA [Streptomyces coelicolor A3(2)] gi|24413863|emb|CAD55464.1| chromosomal replication initiator protein [Streptomyces coelicolor A3(2)] Length = 656 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 197/350 (56%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 317 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 371 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 372 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKEST 431 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 432 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 491 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 492 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 543 Query: 393 ADELLSHLVNTGETKKMRIED--IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ ++ DL R R +V RQ+AMYL + Sbjct: 544 TEIVLKDLIPGGEDSAPEITSTAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCR 603 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 604 ELTDLSLPKIGALFGGRDHTTVMHADRKIRNLMAERRSIYNQVTELTNRI 653 >gi|260909520|ref|ZP_05916223.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636368|gb|EEX54355.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 469 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 139/461 (30%), Positives = 231/461 (50%), Gaps = 29/461 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITK-LFQEEHS 102 + V P + +WF+ + F S ++ L VP++F+ +I+ Y++ +++ LF Sbjct: 16 IAQNVSPQQFDTWFKPIVFESFNDETKLLVLRVPSSFVYEYIEEHYIDLLSRVLFSAFGQ 75 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 RI+ L V + S K T +K+ K P LD + Sbjct: 76 RIR----LTYRVVVDSEHKKTQDIEADPAEAHATQAAKTWGAKQKTEEEPAKEQELDPQL 131 Query: 163 ----VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 FS +IEG SN+++ + SIAE H T + NP+FI+ G GKTHL+ AI Sbjct: 132 NPHQTFSNYIEGDSNKLSRSVGLSIAE---HPNTN-QFNPMFIYGPSGCGKTHLVNAIGV 187 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQ 277 + + P RV+Y++A F +F +A+ N + + ID+L++DD+Q + Q Sbjct: 188 QTKQLYPQKRVLYISAHLFQVQFVNAVLKNATNDFIKFYQTIDMLIVDDVQTWASADKTQ 247 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 F H+ N L + K+++ A+DRPP EL + R+ +R G+ L + ++ IL Sbjct: 248 ETFFHIFNHLFRNGKRIILASDRPPVELNDMSDRLITRFSCGIIAELEKPNVQLCVDILN 307 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----A 393 ++ + D L I EV +A T S R+L+G N L+ +++ + ++I A Sbjct: 308 AKI----RRD-GLKIPAEVTQFIAETANGSVRDLEGVINSLM---AYSVVYNSDIDMRLA 359 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + ++ V +T + I+DI V+ H+N+S + + S R R +V PRQV+MYL++ T Sbjct: 360 ERVIKRAVKIDDTP-LTIDDILEKVSHHFNVSVSAVSSKSRKRDLVVPRQVSMYLAQRYT 418 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 IG+ G RDH+TVLH+ +VE L+TD EVE Sbjct: 419 KMPASRIGKLVGGRDHSTVLHSCAQVEARLKTDSLFAAEVE 459 >gi|295101863|emb|CBK99408.1| chromosomal replication initiator protein DnaA [Faecalibacterium prausnitzii L2-6] Length = 440 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/445 (29%), Positives = 228/445 (51%), Gaps = 42/445 (9%) Query: 53 DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 ++Y + + F H + LSV +F+ + +RYL L +E + G ++ + Sbjct: 25 NLYIDGLEPISFEDSSH--ITLSVRNDFICKIVTDRYL----GLLKEAFKTVLGFDVDI- 77 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 ++ +PS ++L +Q + + F F FI+G S Sbjct: 78 TLVVPST-------------------PPHEVVLAQQYEANPASPQGNYEFTFENFIKGPS 118 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N+ A AAQ++A S Y NPLFI+ GLGKTHLL AI + P+ ++Y+ Sbjct: 119 NQFAFAAAQAVAANPSGAY-----NPLFIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYV 173 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 T E F +AIR + + R DLLL+DD+QF+ GK Q EF H NSL D+ Sbjct: 174 TCEQFTNELIAAIRAGSTEDFRMKYRVADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAH 233 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V A+DRP E++SL+ R+R+R + G++ + D+E R +I+K + + L+ Sbjct: 234 KQIVIASDRPAKEIKSLEERLRTRFEWGLTADVQPPDFETRVAIVKRKAELLH-----LD 288 Query: 352 INEEVLMHVARTVTTSGRELDGA---FNQLVFRHSFAPILTAEIADELLSHLVNTGETKK 408 + E+V +A + + R+L+GA N P+++ +A + ++N + Sbjct: 289 LPEDVAEFIANHLKNNIRQLEGAVKKLNAYYMLEGIQPVIS--VAQNAIKDILNETQPVP 346 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + IE I V++ +N+S D+ +R V R+VA+Y+ + +T S EIGR F RD Sbjct: 347 VTIEKIVGEVSRTFNVSPADIRGTKRNANVASARRVAIYILREVTGMSMEEIGREFSGRD 406 Query: 469 HTTVLHAVRKVEKMLETDITLKKEV 493 H+T++++++ +E+ ++ D L++ V Sbjct: 407 HSTIVYSLKTMERDMKNDQHLRETV 431 >gi|288926565|ref|ZP_06420482.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella buccae D17] gi|288336642|gb|EFC75011.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella buccae D17] Length = 469 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 127/447 (28%), Positives = 231/447 (51%), Gaps = 21/447 (4%) Query: 55 YASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 + +WF+ + F S + + VP+ F+ +++ Y++ ++++ + + GV + R Sbjct: 25 FVTWFKPIVFESFNEESKTLLVQVPSPFVYEYLEENYVDLLSRVLRRTYG--TGVRLSYR 82 Query: 113 SVALPS---VEKTASSPSITKLSP-INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 V + + P+ L P T +KSP L + L+ F+ +I Sbjct: 83 VVTDKEHNLSQDIEAEPTDLALRPQAKTQANKSPTALDAAQLQ-ALDPQLNPHLTFNNYI 141 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++ + SIAE H TT + NP+FI+ G GKTHL+ AI + + P R Sbjct: 142 EGDSNKLPRSIGLSIAE---HPNTT-QFNPMFIYGPSGCGKTHLVNAIGLHAKQLYPQKR 197 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQHEFCHLLNSL 287 V+Y++A F ++ SA+ N + + IDLL++DD+Q ++ Q F H+ N L Sbjct: 198 VLYVSARLFQVQYTSAVLQNTLNDFIKFYQTIDLLIVDDIQEWMTATKTQETFFHIFNHL 257 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + K+++ A+DRPP +L+ + R+ +R G+ L + ++ IL++++ + D Sbjct: 258 FKNGKRIILASDRPPVDLKGMPDRLLTRFSCGLIAELEKPNVQLCIDILQSKI----RRD 313 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGET 406 L I + V+ ++A + S R L+G N L+ + ++ + ++A+ + VN E Sbjct: 314 -GLKIPDNVVQYIAENASGSVRGLEGVINGLLAYSITYNCDINLKLAERCIKRAVNI-ED 371 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + ++DI V H+N++ + S R R +V RQV+MYL++ T IG+ G+ Sbjct: 372 KPITVDDIIEKVCNHFNVTATAVNSKCRKRDLVVARQVSMYLAQKYTKMPASRIGKLVGN 431 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEV 493 RDH+TV+H+ +VE+ L+ D EV Sbjct: 432 RDHSTVIHSCTQVERRLKADHAFYDEV 458 >gi|291558311|emb|CBL35428.1| chromosomal replication initiator protein DnaA [Eubacterium siraeum V10Sc8a] Length = 466 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 112/343 (32%), Positives = 189/343 (55%), Gaps = 18/343 (5%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TFI G +N++A A +++ + S R NPL+I++ GLGKTHLL A+ + K Sbjct: 132 TFDTFIVGDNNKLAYAACKAVVQEPS-----TRYNPLYIYSEPGLGKTHLLSAVKSEMEK 186 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSLRNIDLLLIDDMQFLQGKL-IQHEF 280 P++ ++Y TA+ F + S +R L K R+ DLLLIDD+QF+ K Q E Sbjct: 187 LHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMANKSETQQEL 246 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H NSL + KQ++ +DRPP EL ++ R+ SR + G+ + +YE R +I+K + Sbjct: 247 FHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYETRIAIIKRKA 306 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF---NQLVFRHSFAPILTAEIADELL 397 + +N+ + ++ +A + T+ R+L+GA N L P L +A +++ Sbjct: 307 ELY-----GMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTLN--MAQQVV 359 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + + E + +E I V K Y+++ D+ S +R + RQVA+Y+ +T S+ Sbjct: 360 RDIQSNHEPIPLTVEKIISEVGKIYSVTPEDMRSQKRSSQISTARQVAIYVVNRITGLSY 419 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 IG FG+RDH+T+++A+ KV+ ++ D T K V +++K L Sbjct: 420 SNIGVEFGNRDHSTIVYAINKVKSTIKKDPTFKGMVDDMIKNL 462 >gi|257437736|ref|ZP_05613491.1| DNA replication initiator protein, ATPase [Faecalibacterium prausnitzii A2-165] gi|257200043|gb|EEU98327.1| DNA replication initiator protein, ATPase [Faecalibacterium prausnitzii A2-165] Length = 440 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/445 (29%), Positives = 228/445 (51%), Gaps = 42/445 (9%) Query: 53 DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 ++Y + + F H + LSV +F+ + +RYL L +E + G ++ + Sbjct: 25 NLYIDGLEPISFEDSSH--ITLSVRNDFICKIVTDRYL----GLLKEAFKTVLGFDVDI- 77 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 ++ +PS ++L +Q + + F F FI+G S Sbjct: 78 TLVVPST-------------------PPHEVVLAQQYEANPASPQGNYEFTFENFIKGPS 118 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N+ A AAQ++A S Y NPLFI+ GLGKTHLL AI + P+ ++Y+ Sbjct: 119 NQFAFAAAQAVAANPSGAY-----NPLFIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYV 173 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 T E F +AIR + + R DLLL+DD+QF+ GK Q EF H NSL D+ Sbjct: 174 TCEQFTNELIAAIRAGSTEDFRMKYRVADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAH 233 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V A+DRP E++SL+ R+R+R + G++ + D+E R +I+K + + L+ Sbjct: 234 KQIVIASDRPAKEIKSLEERLRTRFEWGLTADVQPPDFETRVAIVKRKAELLH-----LD 288 Query: 352 INEEVLMHVARTVTTSGRELDGA---FNQLVFRHSFAPILTAEIADELLSHLVNTGETKK 408 + E+V +A + + R+L+GA N P+++ +A + ++N + Sbjct: 289 LPEDVAEFIANHLKNNIRQLEGAVKKLNAYYMLEGIQPVIS--VAQNAIKDILNETQPVP 346 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + IE I V++ +N+S D+ +R V R+VA+Y+ + +T S EIGR F RD Sbjct: 347 VTIEKIVGEVSRTFNVSPADIRGTKRNANVASARRVAIYILREVTGMSMEEIGREFSGRD 406 Query: 469 HTTVLHAVRKVEKMLETDITLKKEV 493 H+T++++++ +E+ ++ D L++ V Sbjct: 407 HSTIVYSLKTMERDMKNDQHLRETV 431 >gi|288802026|ref|ZP_06407467.1| DNA replication initiator protein, ATPase [Prevotella melaninogenica D18] gi|288335461|gb|EFC73895.1| DNA replication initiator protein, ATPase [Prevotella melaninogenica D18] Length = 468 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 128/459 (27%), Positives = 234/459 (50%), Gaps = 28/459 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K V + +WF+ + S + + VP+ F+ +++ Y++ + K+ Sbjct: 16 IKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEGHYVDLLRKVLTRVFG- 74 Query: 104 IQGVEILVRSVA-----LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 QGV++ R + L + + I+ P ++SP +L T+ S L Sbjct: 75 -QGVQLTYRVMIDQENHLSQDLEQDTVEDISSQRP-TARANQSPTVL--DTVPQDLDSQL 130 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D FS ++EG SN++ + SIAE H TT + NP+FI+ G GKTHL+ AI Sbjct: 131 DPHKSFSNYVEGDSNKLPRSIGLSIAE---HPNTT-QFNPMFIYGPSGCGKTHLVNAIGL 186 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQ 277 + + P RV+Y++A F ++ ++R N + + + ID+L++DD+Q ++ Q Sbjct: 187 RAKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDILIVDDIQEWVTATKTQ 246 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L + ++ IL Sbjct: 247 DTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKPNVQLCVDILH 306 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELL 397 +++ K D LNI E+V+ +A T S R+L G N L+ +++ + + I L Sbjct: 307 SKI----KRD-GLNIPEDVVRFIAETANGSVRDLQGVINSLL---AYSVVYNSNIDMRLA 358 Query: 398 SHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++ + + + I+DI V HYN++ + + S R + +V RQV+MY+++ T Sbjct: 359 ERVIKRAVKIDDEPLTIDDILDKVCSHYNVTMSAVNSRSRKKDIVMARQVSMYMAQKYTK 418 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 IG+ G+RDH+TV+H+ K+E L+ D E+ Sbjct: 419 MPASRIGKLVGNRDHSTVIHSCSKIEDRLKVDKGFHAEI 457 >gi|160944267|ref|ZP_02091496.1| hypothetical protein FAEPRAM212_01776 [Faecalibacterium prausnitzii M21/2] gi|158444449|gb|EDP21453.1| hypothetical protein FAEPRAM212_01776 [Faecalibacterium prausnitzii M21/2] gi|295103715|emb|CBL01259.1| chromosomal replication initiator protein DnaA [Faecalibacterium prausnitzii SL3/3] Length = 440 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/445 (29%), Positives = 228/445 (51%), Gaps = 42/445 (9%) Query: 53 DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 ++Y + + F H + LSV +F+ + +RYL L +E + G ++ + Sbjct: 25 NLYIDGLEPISFEDSSH--ITLSVRNDFICKIVTDRYL----GLLKEAFKSVLGFDVDI- 77 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 ++ +PS ++L +Q + + F F FI+G S Sbjct: 78 TLVVPST-------------------PPHEVVLAQQYEANPASPQGNYEFTFENFIKGPS 118 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N+ A AAQ++A S Y NPLFI+ GLGKTHLL AI + P+ ++Y+ Sbjct: 119 NQFAFAAAQAVAANPSGAY-----NPLFIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYV 173 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 T E F +AIR + + R DLLL+DD+QF+ GK Q EF H NSL D+ Sbjct: 174 TCEQFTNELIAAIRAGSTEDFRMKYRVADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAH 233 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V A+DRP E++SL+ R+R+R + G++ + D+E R +I+K + + L+ Sbjct: 234 KQIVIASDRPAKEIKSLEERLRTRFEWGLTADVQPPDFETRVAIVKRKAELLH-----LD 288 Query: 352 INEEVLMHVARTVTTSGRELDGA---FNQLVFRHSFAPILTAEIADELLSHLVNTGETKK 408 + E+V +A + + R+L+GA N P+++ +A + ++N + Sbjct: 289 LPEDVAEFIANHLKNNIRQLEGAVKKLNAYYMLEGIQPVIS--VAQNAIKDILNETQPVP 346 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + IE I V++ +N+S D+ +R V R+VA+Y+ + +T S EIGR F RD Sbjct: 347 VTIEKIIGEVSRTFNVSPADIRGTKRNANVASARRVAIYILREVTGMSMEEIGREFSGRD 406 Query: 469 HTTVLHAVRKVEKMLETDITLKKEV 493 H+T++++++ +E+ ++ D L++ V Sbjct: 407 HSTIVYSLKTMERDMKNDQHLRETV 431 >gi|315606265|ref|ZP_07881281.1| DNA-directed DNA replication initiator protein [Prevotella buccae ATCC 33574] gi|315251956|gb|EFU31929.1| DNA-directed DNA replication initiator protein [Prevotella buccae ATCC 33574] Length = 469 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 129/450 (28%), Positives = 233/450 (51%), Gaps = 27/450 (6%) Query: 55 YASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 + +WF+ + F S + + VP+ F+ +++ Y++ ++++ + + GV + R Sbjct: 25 FVTWFKPIVFESFNEESKTLLVQVPSPFVYEYLEENYVDLLSRVLRRTYG--TGVRLSYR 82 Query: 113 SVALPS---VEKTASSPSITKLSP-INTNISKSPIILGK---QTISPVFGSPLDSRFVFS 165 V + + P+ L P T +KSP L Q + P L+ F+ Sbjct: 83 VVTDKEHNLSQDIEAEPTDLALRPQAKTQANKSPTALDAAQPQALDP----QLNPHLTFN 138 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +IEG SN++ + SIAE H TT + NP+FI+ G GKTHL+ AI + + P Sbjct: 139 NYIEGDSNKLPRSIGLSIAE---HPNTT-QFNPMFIYGPSGCGKTHLVNAIGLHAKQLYP 194 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQHEFCHLL 284 RV+Y++A F ++ SA+ N + + IDLL++DD+Q ++ Q F H+ Sbjct: 195 QKRVLYVSARLFQVQYTSAVLQNTLNDFIKFYQTIDLLIVDDIQEWMTATKTQETFFHIF 254 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N L + K+++ A+DRPP +L+ + R+ +R G+ L + ++ IL++++ Sbjct: 255 NHLFKNGKRIILASDRPPVDLKGMPDRLLTRFSCGLIAELEKPNVQLCIDILQSKI---- 310 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNT 403 + D L I + V+ ++A + S R L+G N L+ + ++ + ++A+ + VN Sbjct: 311 RRD-GLKIPDNVVQYIAENASGSVRGLEGVINGLLAYSITYNCDINLKLAERCIKRAVNI 369 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 E K + ++DI V H+N++ + S R R +V RQV+MYL++ T IG+ Sbjct: 370 -EDKPITVDDIIEKVCNHFNVTATAVNSKCRKRDLVVARQVSMYLAQKYTKMPASRIGKL 428 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 G+RDH+TV+H+ +VE+ L+ D EV Sbjct: 429 VGNRDHSTVIHSCTQVERRLKADHAFYDEV 458 >gi|291531951|emb|CBK97536.1| chromosomal replication initiator protein DnaA [Eubacterium siraeum 70/3] Length = 467 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 112/343 (32%), Positives = 189/343 (55%), Gaps = 18/343 (5%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TFI G +N++A A +++ + S R NPL+I++ GLGKTHLL A+ + K Sbjct: 133 TFDTFIVGDNNKLAYAACKAVVQEPS-----TRYNPLYIYSEPGLGKTHLLSAVKSEMEK 187 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSLRNIDLLLIDDMQFLQGKL-IQHEF 280 P++ ++Y TA+ F + S +R L K R+ DLLLIDD+QF+ K Q E Sbjct: 188 LHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMANKSETQQEL 247 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H NSL + KQ++ +DRPP EL ++ R+ SR + G+ + +YE R +I+K + Sbjct: 248 FHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYETRIAIIKRKA 307 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF---NQLVFRHSFAPILTAEIADELL 397 + +N+ + ++ +A + T+ R+L+GA N L P L +A +++ Sbjct: 308 ELY-----GMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTLN--MAQQVV 360 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + + E + +E I V K Y+++ D+ S +R + RQVA+Y+ +T S+ Sbjct: 361 RDIQSNHEPIPLTVEKIIAEVGKIYSVTPEDMRSQKRSSQISTARQVAIYVVNRITGLSY 420 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 IG FG+RDH+T+++A+ KV+ ++ D T K V +++K L Sbjct: 421 SNIGVEFGNRDHSTIVYAINKVKSTIKKDPTFKGMVDDMIKNL 463 >gi|313112577|ref|ZP_07798238.1| replication initiator protein DnaA [Faecalibacterium cf. prausnitzii KLE1255] gi|310625099|gb|EFQ08393.1| replication initiator protein DnaA [Faecalibacterium cf. prausnitzii KLE1255] Length = 440 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 132/445 (29%), Positives = 228/445 (51%), Gaps = 42/445 (9%) Query: 53 DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 ++Y + + F H + LSV +F+ + +RYL L +E + G ++ + Sbjct: 25 NLYIDGLEPISFEDSSH--ITLSVRNDFICKIVTDRYL----GLLKEAFKTVLGFDVDI- 77 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 ++ +PS ++L +Q + + F F FI+G S Sbjct: 78 TLVVPST-------------------PPHEVVLAQQYEANPASPQGNYEFTFENFIKGPS 118 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N+ A AAQ++A S Y NPLFI+ GLGKTHLL AI + P+ ++Y+ Sbjct: 119 NQFAFAAAQAVAANPSGAY-----NPLFIYGGSGLGKTHLLTAIQTEIKRTHPDFVIMYV 173 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 T E F +AIR + + R DLLL+DD+QF+ GK Q EF H NSL D+ Sbjct: 174 TCEQFTNELIAAIRAGSTEDFRMKYRVADLLLVDDIQFIAGKESTQEEFFHTFNSLHDAH 233 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V A+DRP E++SL+ R+R+R + G++ + D+E R +I+K + + L+ Sbjct: 234 KQIVIASDRPAKEIKSLEERLRTRFEWGLTADVQPPDFETRVAIVKRKAELLH-----LD 288 Query: 352 INEEVLMHVARTVTTSGRELDGA---FNQLVFRHSFAPILTAEIADELLSHLVNTGETKK 408 + E+V +A + + R+L+GA N P+++ +A + ++N + Sbjct: 289 LPEDVAEFIANHLKNNIRQLEGAVKKLNAYYMLEGIQPVIS--VAQNAIKDILNETQPVP 346 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + IE I V++ +N+S D+ +R V R+VA+Y+ + +T S EIGR F RD Sbjct: 347 VTIEKIIGEVSRTFNVSPADIRGTKRNANVASARRVAIYILREVTGMSMEEIGREFSGRD 406 Query: 469 HTTVLHAVRKVEKMLETDITLKKEV 493 H+T++++++ +E+ ++ D L++ V Sbjct: 407 HSTIVYSLKTMERDMKNDQHLRETV 431 >gi|167751447|ref|ZP_02423574.1| hypothetical protein EUBSIR_02443 [Eubacterium siraeum DSM 15702] gi|167655693|gb|EDR99822.1| hypothetical protein EUBSIR_02443 [Eubacterium siraeum DSM 15702] Length = 467 Score = 188 bits (478), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 112/343 (32%), Positives = 189/343 (55%), Gaps = 18/343 (5%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TFI G +N++A A +++ + S R NPL+I++ GLGKTHLL A+ + K Sbjct: 133 TFDTFIVGDNNKLAYAACKAVVQEPS-----TRYNPLYIYSEPGLGKTHLLSAVKSEMEK 187 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSLRNIDLLLIDDMQFLQGKL-IQHEF 280 P++ ++Y TA+ F + S +R L K R+ DLLLIDD+QF+ K Q E Sbjct: 188 LHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMANKSETQQEL 247 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H NSL + KQ++ +DRPP EL ++ R+ SR + G+ + +YE R +I+K + Sbjct: 248 FHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYETRIAIIKRKA 307 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF---NQLVFRHSFAPILTAEIADELL 397 + +N+ + ++ +A + T+ R+L+GA N L P L +A +++ Sbjct: 308 ELY-----GMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTLN--MAQQVV 360 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + + E + +E I V K Y+++ D+ S +R + RQVA+Y+ +T S+ Sbjct: 361 RDIQSNHEPIPLTVEKIIAEVGKIYSVTPEDMRSQKRSSQISTARQVAIYVVNRITGLSY 420 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 IG FG+RDH+T+++A+ KV+ ++ D T K V +++K L Sbjct: 421 SNIGVEFGNRDHSTIVYAINKVKSTIKKDPTFKGMVDDMIKNL 463 >gi|254507297|ref|ZP_05119433.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus 16] gi|219549757|gb|EED26746.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus 16] Length = 278 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 109/281 (38%), Positives = 172/281 (61%), Gaps = 10/281 (3%) Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H Sbjct: 4 KPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFH 63 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + Sbjct: 64 TFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----M 118 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHL 400 + ED ++++ +EV +A+ + ++ REL+GA N+++ +F PI T + E L L Sbjct: 119 KKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDL 177 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEI Sbjct: 178 LALQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEI 236 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 237 GDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 277 >gi|11132617|sp|Q9ZH76|DNAA_STRRE RecName: Full=Chromosomal replication initiator protein DnaA gi|3808288|gb|AAD08806.1| DNA replication initiator protein [Streptomyces reticuli] Length = 643 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 202/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 304 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 358 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 359 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKEST 418 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 419 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 478 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 479 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 530 Query: 393 ADELLSHLVNTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE T ++ I A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 531 TEIVLKDLIPGGEDSTPEITATAIMAATADYFGLTVDDLCGSSRGRQLVTARQIAMYLCR 590 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 591 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 640 >gi|170076637|ref|YP_001733275.1| chromosomal replication initiation protein [Synechococcus sp. PCC 7002] gi|226735857|sp|B1XKQ0|DNAA_SYNP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|169884306|gb|ACA98019.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7002] Length = 449 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 138/457 (30%), Positives = 226/457 (49%), Gaps = 42/457 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY---- 89 N + ++ V ++L+ Q+ Y +W Q + + L P F+ I+ Y Sbjct: 4 NPQWLWQEVLTKLEQQLSRPTYETWIQPTAIQQWREDEIVLCAPNAFVLNHIQKYYGALI 63 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 ETI +L Q+ V+ +SP L+ + S Q+ Sbjct: 64 TETIAELLQQ------------------PVKVRLTSPEGNTLAATQSFYSSR----SGQS 101 Query: 150 ISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P +P L+S++ FS F+ G +NR+A AA ++AE + NPL + VGLG Sbjct: 102 TRPGKKTPELNSKYTFSRFVVGPTNRMAHAAALAVAESPGRDF-----NPLVLCGGVGLG 156 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + + QP+ ++ Y++ E F AIR + ++ R D+LL+DD+ Sbjct: 157 KTHLMQAIGHYRLDTQPDAKIFYVSTEQFTNDLIVAIRKDSLQTFREHYRTADILLVDDI 216 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK Q EF + N+L ++ KQ+V A+DRPP ++ L R+ SR G+ + Sbjct: 217 QFIEGKEYTQEEFFYTFNTLHEAGKQIVLASDRPPHQIPGLQQRLSSRFSMGLIADIQPP 276 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ + E LN++ V+ ++A T + REL+GA + V + I Sbjct: 277 DLETRMAILQKK-----AEAENLNLSRSVIEYIATHYTANIRELEGALLRAV---THIAI 328 Query: 388 LTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + E L+ ++N T E + I ++ A+ +S DL R R + RQ+AM Sbjct: 329 SGLPMTVENLAPILNPTVEYAPAAPDVILQIAAEATGVSIEDLKGASRRREISTARQIAM 388 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 YL + T S P IG FG +DHTTV+++ K+ ++L Sbjct: 389 YLMRQHTDLSLPRIGELFGGKDHTTVMYSCDKIGQLL 425 >gi|304382865|ref|ZP_07365348.1| DNA-directed DNA replication initiator protein [Prevotella marshii DSM 16973] gi|304336050|gb|EFM02297.1| DNA-directed DNA replication initiator protein [Prevotella marshii DSM 16973] Length = 489 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 134/480 (27%), Positives = 238/480 (49%), Gaps = 29/480 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 +E ++++ V ++ V Y +WF+ + F S + L VP+ F+ +++ Sbjct: 21 MEATPKALWEYVLKFIRENVSEQTYDTWFKPVVFESFNTSTKTLLVRVPSRFIYEYLEEN 80 Query: 89 YLETITKLFQEEHSRIQGV------EILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 + + +TK +R G+ ILV + ++E S P+ P +T P Sbjct: 81 FTDLLTKGL----TRAYGIGVHLNYRILVDKINNQTLE-VESDPAAAIDRPQSTTTGNRP 135 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + + S L+ F FIEG SN++ + SIAE H T + NP+FI+ Sbjct: 136 PSVLDAAMPQQIESQLNPHQTFRNFIEGDSNKLPRSVGMSIAE---HPEGT-QFNPMFIY 191 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 G GKTHL+ AI + + P RV+Y++A F +F +A+ N + + + IDL Sbjct: 192 GPSGCGKTHLINAIGVRTKELYPEKRVLYISARLFQVQFTNAVLQNSTNDFINFYQTIDL 251 Query: 263 LLIDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+Q ++ Q F H+ N L + K++V A DRPP EL+ ++ R+ +R G+ Sbjct: 252 LLVDDIQEWMTATKTQDTFFHIFNHLFRNGKRIVLACDRPPVELKGMNDRLLTRFSCGLI 311 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 L + ++ +IL + ++E L I +V+ ++A+T S R+L G N L+ Sbjct: 312 AELERPNVQLCRNILDTEI---RREG--LKIPADVVEYIAQTANESVRDLQGVVNSLM-- 364 Query: 382 HSFAPILTAEIADELLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +++ + + I L ++ + K + I+DI V H+N+S + S R + + Sbjct: 365 -AYSVVYNSNIDMRLAERVIKRAVKVDNKPLTIDDILETVCHHFNVSATAVNSKSRKKDI 423 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V RQV+MYL++ T IG+ G RDH+TV+H+ ++E L+ D E+ +++ Sbjct: 424 VTARQVSMYLAQKYTKMPAARIGKLVGGRDHSTVIHSCSQIEARLKLDHAFGNELTSIEK 483 >gi|225552151|ref|ZP_03773091.1| chromosomal replication initiator protein DnaA [Borrelia sp. SV1] gi|225371149|gb|EEH00579.1| chromosomal replication initiator protein DnaA [Borrelia sp. SV1] Length = 485 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 135/485 (27%), Positives = 244/485 (50%), Gaps = 53/485 (10%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFTKKIK 63 Query: 95 K------------LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 + LF + S+ + ++ A + PS KL +SK P Sbjct: 64 EILIKNGYNNVVILFTNQPSKTHFNKQESKNPAF-----NETFPSFDKLKE--KTLSKEP 116 Query: 143 I---------ILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 I + K+ F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 117 IQNIQDRIKMYIKKEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY- 175 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + Sbjct: 176 ----NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKK 231 Query: 253 LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R Sbjct: 232 FKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDR 291 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 ++SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L Sbjct: 292 LKSRFTRGLNVDISKPNFELRAAIVEKKA-----EEDGINVPKNILNLVAQKVTTNIRDL 346 Query: 372 DGAFNQLVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAKH 421 + A +L ++ + EI + ++ T E K+ IE+I++++ + Sbjct: 347 EAAVTKL---KAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRE 403 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 I+ D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ Sbjct: 404 LKITHKDIEGHSKKPDITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDR 463 Query: 482 MLETD 486 D Sbjct: 464 DRNND 468 >gi|15643688|ref|NP_228734.1| chromosomal replication initiation protein [Thermotoga maritima MSB8] gi|1169366|sp|P46798|DNAA_THEMA RecName: Full=Chromosomal replication initiator protein DnaA gi|168177182|pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|168177183|pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|168177184|pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|168177185|pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|4981463|gb|AAD36007.1|AE001756_10 chromosomal replication initiator protein [Thermotoga maritima MSB8] gi|780792|gb|AAA65438.1| DnaA [Thermotoga maritima MSB8] Length = 440 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 134/428 (31%), Positives = 209/428 (48%), Gaps = 39/428 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K +V + WF S+ N V SV F+K W++ +Y ++K Sbjct: 9 IKTRVNRKSWELWFSSFDVKSIEGNKVVFSVGNLFIKEWLEKKYYSVLSK---------- 58 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V++++ + A + A P + P+ + K ++L +PL+ + F Sbjct: 59 AVKVVLGNDATFEITYEAFEPHSSYSEPL---VKKRAVLL----------TPLNPDYTFE 105 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ G N A AA +A+ R NPLFI+ VGLGKTHLLQ+I N ++ +P Sbjct: 106 NFVVGPGNSFAYHAALEVAKHPG------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP 159 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQHEFCHL 283 +LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q E H Sbjct: 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHT 219 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N L DS KQ+V +DR P +L R+ SR Q G+ L D E R SI + L I Sbjct: 220 FNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIE 279 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADELLSHLVN 402 E P EEVL VA V + R L GA + LV++ + + + A LL + Sbjct: 280 HGELP-----EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFIK 334 Query: 403 TGETKKMR-IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 K M I+++ +VAK + R ++LSN R + R++ MY++K S I Sbjct: 335 PNRVKAMDPIDELIEIVAKVTGVPREEILSNSRNVKALTARRIGMYVAKNYLKSSLRTIA 394 Query: 462 RRFGDRDH 469 +F +R H Sbjct: 395 EKF-NRSH 401 >gi|15594782|ref|NP_212571.1| chromosomal replication initiator protein (dnaA) [Borrelia burgdorferi B31] gi|216264677|ref|ZP_03436669.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 156a] gi|224532482|ref|ZP_03673107.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi WI91-23] gi|226321067|ref|ZP_03796609.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 29805] gi|461940|sp|P33768|DNAA_BORBU RecName: Full=Chromosomal replication initiator protein DnaA gi|454039|gb|AAA58941.1| DnaA protein [Borrelia burgdorferi] gi|2688358|gb|AAB91515.1| chromosomal replication initiator protein (dnaA) [Borrelia burgdorferi B31] gi|215981150|gb|EEC21957.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 156a] gi|224512554|gb|EEF82930.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi WI91-23] gi|226233477|gb|EEH32216.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 29805] Length = 486 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/486 (27%), Positives = 247/486 (50%), Gaps = 54/486 (11%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFTKKIK 63 Query: 95 K-LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS------------ 141 + L + ++ I ++V + P KT S+ TK +N SK Sbjct: 64 EILIKNGYNNI----VIVFTNQPP---KTHSNKQETKNPALNETFSKFDKLKEKTTSKEA 116 Query: 142 --------PIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 + + K+ P F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 117 IQNIQDRIKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY 176 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + Sbjct: 177 -----NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETK 231 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + Sbjct: 232 KFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTD 291 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R++SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+ Sbjct: 292 RLKSRFTRGLNVDISKPNFELRAAIVEKKA-----EEDGINVPKNILNLVAQKVTTNVRD 346 Query: 371 LDGAFNQLVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAK 420 L+ A +L ++ + EI + ++ T E K+ IE+I++++ + Sbjct: 347 LEAAVTKL---KAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLR 403 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 I+ D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K++ Sbjct: 404 ELKITHKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKID 463 Query: 481 KMLETD 486 + D Sbjct: 464 RDRNND 469 >gi|330995967|ref|ZP_08319861.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT 11841] gi|329573964|gb|EGG55542.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT 11841] Length = 468 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 131/484 (27%), Positives = 242/484 (50%), Gaps = 29/484 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY- 89 +E + +S++ ++N V Y +WF+ ++ S ++ +P+ + ++ + Sbjct: 1 MEGSAQSLWERCLPIIRNNVDEKQYRTWFEPIQIISFEKQVLTFGLPSQYFYEFLSEHFG 60 Query: 90 ---LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSI--TKLSPINTNISKSPII 144 + ++F E + + +E + P K+ +N + SP+ Sbjct: 61 RLIFSVVRRVFGEGTQLKYSLMVDQTHHLTVDIEPVNTQPLTPRAKIQATGSNRAPSPL- 119 Query: 145 LGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 Q P P L+ + F FIEG SN++ + Q+IAE NPLFI+ Sbjct: 120 ---QAPMPQDLDPQLNRNYSFENFIEGVSNKLPRSVGQAIAEHPKQS----TFNPLFIYG 172 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + G+GKTHL+ AI + P RV+Y++A F ++ ++R N + + + ID+L Sbjct: 173 ASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFINFYQTIDVL 232 Query: 264 LIDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+Q F Q+ F H+ N L + +Q++ +DRPP+ L+ ++ R+ +R + G+ Sbjct: 233 IIDDVQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERLLTRFKWGLLA 292 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 L + ++R IL+N++ ++D L I EEV+ V+ V S REL+G N L+ Sbjct: 293 ELEKPNQQLRHDILENKI----RQD-GLKIPEEVIDFVSENVNDSVRELEGIVNSLM--- 344 Query: 383 SFAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +++ + +I A+++L V E K + I+ I V ++N+ + D+ + R + V Sbjct: 345 AYSVVWNRDIDLPLAEQILKRAVKV-ENKPVTIDFILDKVCGYFNVKQEDVFTKCRKQPV 403 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + RQ+AMYL++ T S IG G R H TVLH+ VE L D K +++ +++ Sbjct: 404 AQVRQIAMYLAQKHTNLSLARIGSLIGKRTHATVLHSCSVVEDRLHVDKAFKSKMDEIEK 463 Query: 499 LISE 502 L+ + Sbjct: 464 LLKQ 467 >gi|307331907|ref|ZP_07611003.1| chromosomal replication initiator protein DnaA [Streptomyces violaceusniger Tu 4113] gi|306882425|gb|EFN13515.1| chromosomal replication initiator protein DnaA [Streptomyces violaceusniger Tu 4113] Length = 388 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 127/350 (36%), Positives = 201/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 49 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 103 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD A + R++D+LL+DD+QFL K Sbjct: 104 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKADAFRRRYRDMDILLVDDIQFLASKEST 163 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 164 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 223 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 224 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 275 Query: 393 ADELLSHLVNTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A+ +L L+ GE ++ I A ++ + +DL R R +V RQ+AMYL + Sbjct: 276 AEIVLKDLIPGGEDAAPEITATAIMAATADYFGHTVDDLCGASRSRVLVTARQIAMYLCR 335 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 336 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 385 >gi|293191011|ref|ZP_06609055.1| DnaA [Actinomyces odontolyticus F0309] gi|292820698|gb|EFF79664.1| DnaA [Actinomyces odontolyticus F0309] Length = 479 Score = 187 bits (476), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 137/453 (30%), Positives = 228/453 (50%), Gaps = 32/453 (7%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 +++GP V S + + + + L+VP +F K WI+++ +T R + Sbjct: 20 DELGP-VATSMLRSARPLGDIEGTILLAVPNDFTKQWIEDKAQSKLTTALSVHLGRTVRI 78 Query: 108 EILVRSVALPSVEKTASSPSITKL---SPINTNISK----SPIILGKQTISPVFGSP--L 158 I V E+ + +P ++ SP ++ +P P L Sbjct: 79 AITVDPTLEVVTEEEEEEETTPAAPTDAPASSTDEDEEHHSPALV----TAPTDSGPTHL 134 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + +F F TF+ G SNR A AA + +E + NPLFI+ GLGKTHLLQAI + Sbjct: 135 NPKFTFDTFVIGPSNRFAHAAALAASETPGTAF-----NPLFIYGDSGLGKTHLLQAIGH 189 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQG 273 ++ P+L+V Y+ +E F F +AIR N N R +D+LLIDD+QF+ Sbjct: 190 NALSMMPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGD 249 Query: 274 KLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K E F H N+L + KQ+V +D PP++L+ + R+RSR G+ V + D E R Sbjct: 250 KEQTVEGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETR 309 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAE 391 +IL + + L + EV +VA ++++ REL+GA ++ + + + Sbjct: 310 IAILHKK-----ADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLN 364 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A +L V+ + ++ + I A ++ ++ + S+ R VV RQ+AMYL + Sbjct: 365 LAQMMLKDFVSNPDDNEITVSLIMSQCAVYFGVTIEQMGSSERSHNVVEARQIAMYLCRE 424 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 +T S P+IG+ FG RDHTTV+HA +K+ K+++ Sbjct: 425 LTDLSLPKIGQAFG-RDHTTVMHANKKISKLMK 456 >gi|295106381|emb|CBL03924.1| chromosomal replication initiator protein DnaA [Gordonibacter pamelaeae 7-10-1-b] Length = 534 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 119/353 (33%), Positives = 201/353 (56%), Gaps = 16/353 (4%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 S F F+ G SNR+A + A ++AE+ + LNPLFI+ GLGKTHLL+AI N Sbjct: 187 STLTFENFVIGDSNRMAYSMAVAVAEMPGKAH----LNPLFIYGKSGLGKTHLLRAIQNY 242 Query: 220 SIKRQPNLRVVYLTAEYFMWRF--ASAIRD---NCALNLKDSLRNIDLLLIDDMQFLQGK 274 + PNL +Y+ + + + ASA D + N K D+LLIDD+Q+LQGK Sbjct: 243 VHETMPNLSTIYVDSAELLSDYMEASAAHDKEKSSYKNFKTRYEEADVLLIDDVQYLQGK 302 Query: 275 LIQHEFC-HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 + + N L +QVV +ADR P ++ +D R +SR G + + + E + Sbjct: 303 KQTLDIVFQIFNKLTGQGRQVVLSADRAPKNID-IDERYKSRFNSGGTFDIQPPEIETKL 361 Query: 334 SILKNRLAISQKEDPK--LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILT 389 I+K+ + + + K I +++ M++A + +++ REL A +++++ +F P L+ Sbjct: 362 GIVKSFVDEYRATEGKASFAIPDDIQMYIAESSSSNIRELKSAVTKVIYQMTFFNQPDLS 421 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + LL + + G +K++ I DIQ+ V Y +S DL+ +R R ++ RQ+A+YLS Sbjct: 422 LDDVRSLLENHFSGGPSKRLTIADIQKEVETFYKVSHADLVGKKRTRNIIYARQIAIYLS 481 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + M F +IG++F +RDH+TV+++V VE+ ++ L++E+E LK+LI E Sbjct: 482 RQMLDLPFNDIGKKF-NRDHSTVMYSVTNVEEKMKESRELREELETLKQLIRE 533 >gi|256786613|ref|ZP_05525044.1| chromosomal replication initiation protein [Streptomyces lividans TK24] Length = 641 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 125/349 (35%), Positives = 196/349 (56%), Gaps = 21/349 (6%) Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI + Sbjct: 303 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGH 357 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Q Sbjct: 358 YARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQ 417 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ Sbjct: 418 EEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 477 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIA 393 + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 478 KKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGLT 529 Query: 394 DELLSHLVNTGETKKMRIED--IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + +L L+ GE I I A ++ ++ DL R R +V RQ+AMYL + Sbjct: 530 EIVLKDLIPGGEDSAPEITSTAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRE 589 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 590 LTDLSLPKIGALFGGRDHTTVMHADRKIRNLMAERRSIYNQVTELTNRI 638 >gi|118474813|ref|YP_891211.1| chromosomal replication initiation protein [Campylobacter fetus subsp. fetus 82-40] gi|166201872|sp|A0RLX8|DNAA_CAMFF RecName: Full=Chromosomal replication initiator protein DnaA gi|118414039|gb|ABK82459.1| chromosomal replication initiator protein DnaA [Campylobacter fetus subsp. fetus 82-40] Length = 436 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 127/463 (27%), Positives = 229/463 (49%), Gaps = 46/463 (9%) Query: 46 LKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 L ++ + ++ ++KF+ S NI+ + P + +I+ RY I +F+ Sbjct: 10 LGQEISKNEMENYISQIKFNEKSSNSENII-FTAPNELVTKFIQTRYANKIANIFEV--- 65 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 KT P I+ + N K+ I KQ + S L+ + Sbjct: 66 ------------------KTGIKPVISITTQKNRVSIKAKDIDVKQIRTQ--SSLLNPSY 105 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F +F+ G SN+ A ++Q A+ Y NPLFI+ S GLGKTHLLQ+I N ++ Sbjct: 106 TFESFVVGDSNQFAYISSQQAAQNPGKVY-----NPLFIYGSTGLGKTHLLQSIGNYCLE 160 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QGKLIQHEFC 281 V+ +T+E FM F + + K+ RN D+LLIDD+QF + + Q EF Sbjct: 161 HGKT--VICVTSEQFMSDFIRNVENRTMNKFKEKYRNCDILLIDDIQFFHKSEKTQEEFF 218 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N + Q+V +D+PP L+ + R++SR + G+ + + + + I+K + Sbjct: 219 HTFNEIHAKKGQIVMTSDKPPKMLKGFEERLKSRFEWGLMADITPPELDTKIRIIKAKC- 277 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 E +N++ +++ ++A + + RE++ A ++ ++FA I+ EI E +++ Sbjct: 278 ----EFDGINLSSDIIEYIATNMGDNIREIESA---IININAFANIMRQEITLEFAKNVI 330 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + +E+I V+ NI +D+ S R + +V R++ +YL+K +TP S P Sbjct: 331 KDQIKEKKDNISLENIISCVSHEMNIKPSDIKSKSRTKGIVEARRICIYLAKTLTPNSMP 390 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ FG +DH+ V H ++K+ +++ D K VE LK I+ Sbjct: 391 QLATHFGLKDHSAVSHNIKKINEIINNDGYFKARVEELKNKIT 433 >gi|312148000|gb|ADQ30659.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi JD1] Length = 486 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 132/485 (27%), Positives = 244/485 (50%), Gaps = 52/485 (10%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFTKKIK 63 Query: 95 KL------------FQEEHSRIQGVEILVRSVALPSV--------EKTASSPSITKLSPI 134 ++ F + + + ++ AL EKT S +I + Sbjct: 64 EILIKNGYNNIVIIFTNQPPKTHSNKQETKNPALNETFSKFDKLKEKTTSKEAIQNIQ-- 121 Query: 135 NTNISKSPIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 + + + K+ P F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 122 ----DRIKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY- 176 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + Sbjct: 177 ----NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKK 232 Query: 253 LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R Sbjct: 233 FKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDR 292 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 ++SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L Sbjct: 293 LKSRFTRGLNVDISKPNFELRAAIVEKKA-----EEDGINVPKNILNLVAQKVTTNVRDL 347 Query: 372 DGAFNQLVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAKH 421 + A +L ++ + EI + ++ T E K+ IE+I++++ + Sbjct: 348 EAAVTKL---KAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRE 404 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 I+ D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ Sbjct: 405 LKITHKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDR 464 Query: 482 MLETD 486 D Sbjct: 465 DRNND 469 >gi|307565813|ref|ZP_07628274.1| chromosomal replication initiator protein DnaA [Prevotella amnii CRIS 21A-A] gi|307345437|gb|EFN90813.1| chromosomal replication initiator protein DnaA [Prevotella amnii CRIS 21A-A] Length = 467 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 127/473 (26%), Positives = 243/473 (51%), Gaps = 26/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNR 88 + V+ +S++ + V Y +WF+ L F S + L VP+ F+ +++ Sbjct: 1 MSVSPKSLWEQCLCLISENVSEQQYNTWFKPLVFKSYQPATKCLLLLVPSMFVYEYLEEH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPS----VEKTASSPSITKLSPINTNI--SKSP 142 +++ + K+ +R+ G +++ + + + + + ++ T ++SP Sbjct: 61 FIDLLKKVL----TRVFGERVMLTYSVITDKDHHLTQELQTEGVEQIDSKRTTDRGNQSP 116 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 I+ ++ P S LDS F+ ++EG SN++ LT +IAE + + NPLF++ Sbjct: 117 TII--DSVLPDIDSQLDSHKSFNNYVEGDSNKMPLTIGLAIAEHPNKN----QFNPLFVY 170 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 G GKTHL+ AI K P RV+Y++A F ++ +++R N + + ID+ Sbjct: 171 GPSGCGKTHLINAIGLKIKKLYPQKRVLYVSARLFQVQYTNSVRTNTTNDFIHFYQTIDI 230 Query: 263 LLIDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+Q ++ Q F H+ N L + K+++ A+DRPP +L ++ R+ +R + G+ Sbjct: 231 LLVDDIQEWMTATKTQDTFFHIFNHLSRNGKRIILASDRPPVDLRGMNDRLLTRFKAGLI 290 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-F 380 L + ++ IL N++ K D L I E+V+ +A+T S R+L G N L+ + Sbjct: 291 TELEKPNIQLCIDILHNKI----KRD-GLIIPEDVIQFIAQTANGSVRDLQGVINSLLAY 345 Query: 381 RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + + +A+ ++ V + + + I+DI V +H+N+++ + S R + +V Sbjct: 346 SVVYNSAVDMNLAERVIKRAVKI-DNEPLTIDDILEKVCEHFNVTQAAVNSRSRKKDIVI 404 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 RQV MY+++ T IG+ G RDH+TV+H+ K+E L+ D + E+ Sbjct: 405 ARQVTMYMAQKYTKMPACRIGKLVGGRDHSTVIHSCTKIEDRLQIDKSFTAEL 457 >gi|54021965|ref|YP_116207.1| putative replication initiator protein [Nocardia farcinica IFM 10152] gi|61212513|sp|Q5Z3Z8|DNAA_NOCFA RecName: Full=Chromosomal replication initiator protein DnaA gi|54013473|dbj|BAD54843.1| putative replication initiator protein [Nocardia farcinica IFM 10152] Length = 662 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/331 (35%), Positives = 197/331 (59%), Gaps = 19/331 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++++ F TF+ G+SNR A AA +IAE + Y NPLF+ + GLGKTHLL A Sbjct: 324 LNAKYTFETFVIGASNRFAHAAAVAIAEAPARAY-----NPLFVWGASGLGKTHLLHAAG 378 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + P +RV Y++ E F F +++RD+ + K R D+LL+DD+QF++GK I Sbjct: 379 HYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDIQFIEGKEGI 438 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 439 QEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAIL 498 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + + +L++ +VL +A V + REL+GA L+ +FA + L + Sbjct: 499 RKKARMD-----RLDVPHDVLELIASRVERNIRELEGA---LIRVTAFASLNGQPLDLSL 550 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ +L L+ T ++ I + A+++N + +L + R + + RQ+AMYL + + Sbjct: 551 AEVVLRDLMPDTATLEINAATIMAVTAEYFNTTLEELTGPGKARPLAQARQIAMYLCREL 610 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 T S P+IG+ FG RDHTTV++A +KV K + Sbjct: 611 TDLSLPKIGQAFG-RDHTTVMYAEKKVRKEM 640 >gi|289770505|ref|ZP_06529883.1| chromosomal replication initiator protein DnaA [Streptomyces lividans TK24] gi|289700704|gb|EFD68133.1| chromosomal replication initiator protein DnaA [Streptomyces lividans TK24] Length = 656 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 125/349 (35%), Positives = 196/349 (56%), Gaps = 21/349 (6%) Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI + Sbjct: 318 NPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGH 372 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Q Sbjct: 373 YARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQ 432 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ Sbjct: 433 EEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 492 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIA 393 + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 493 KKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGLT 544 Query: 394 DELLSHLVNTGETKKMRIED--IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + +L L+ GE I I A ++ ++ DL R R +V RQ+AMYL + Sbjct: 545 EIVLKDLIPGGEDSAPEITSTAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRE 604 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 605 LTDLSLPKIGALFGGRDHTTVMHADRKIRNLMAERRSIYNQVTELTNRI 653 >gi|332877991|ref|ZP_08445721.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683953|gb|EGJ56820.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 468 Score = 187 bits (475), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 131/484 (27%), Positives = 242/484 (50%), Gaps = 29/484 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY- 89 +E + +S++ ++N V Y +WF+ ++ S ++ +P+ + ++ + Sbjct: 1 MEGSAQSLWERCLPIIRNNVDEKQYRTWFEPIQTISFEKQVLTFGLPSQYFYEFLSEHFG 60 Query: 90 ---LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSI--TKLSPINTNISKSPII 144 + ++F E + + +E + P K+ +N + SP+ Sbjct: 61 RLIFSVVRRVFGEGTQLKYSLMVDQTHHLTVDIEPVNTQPLTPRAKIQATGSNRAPSPL- 119 Query: 145 LGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 Q P P L+ + F FIEG SN++ + Q+IAE NPLFI+ Sbjct: 120 ---QAPMPQDLDPQLNRNYSFENFIEGVSNKLPRSVGQAIAEHPKQS----TFNPLFIYG 172 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + G+GKTHL+ AI + P RV+Y++A F ++ ++R N + + + ID+L Sbjct: 173 ASGVGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFINFYQTIDVL 232 Query: 264 LIDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+Q F Q+ F H+ N L + +Q++ +DRPP+ L+ ++ R+ +R + G+ Sbjct: 233 IIDDVQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERLLTRFKWGLLA 292 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 L + ++R IL+N++ ++D L I EEV+ V+ V S REL+G N L+ Sbjct: 293 ELEKPNQQLRHDILENKI----RQD-GLKIPEEVIDFVSENVNDSVRELEGIVNSLM--- 344 Query: 383 SFAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +++ + +I A+++L V E K + I+ I V ++N+ + D+ + R + V Sbjct: 345 AYSVVWNRDIDLPLAEQILKRAVKQ-ENKPVTIDFILDKVCGYFNVKQEDVFTKCRKQPV 403 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + RQ+AMYL++ T S IG G R H TVLH+ VE L D K +++ +++ Sbjct: 404 AQVRQIAMYLAQKHTNLSLARIGSLIGKRTHATVLHSCSVVEDRLHVDKAFKSKMDEIEK 463 Query: 499 LISE 502 L+ + Sbjct: 464 LLKQ 467 >gi|309811383|ref|ZP_07705170.1| chromosomal replication initiator protein DnaA [Dermacoccus sp. Ellin185] gi|308434690|gb|EFP58535.1| chromosomal replication initiator protein DnaA [Dermacoccus sp. Ellin185] Length = 501 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 127/366 (34%), Positives = 203/366 (55%), Gaps = 21/366 (5%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 T + P + L P +T + T +P L+ ++ F TF+ G SNR A AA Sbjct: 131 TKADPGVV-LPPRSTGYQRDAAAAPSDTEAPR----LNPKYTFDTFVIGESNRFAHAAAI 185 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +IAE Y NPLFIH GLGKTHLL AI + P LRV Y+++E F F Sbjct: 186 AIAEEPGQAY-----NPLFIHGDSGLGKTHLLHAIGHYVHDYHPKLRVRYVSSEEFTNDF 240 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDM-QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 ++IRD+ A + R+ +L+ D QFLQGK Q EF H N+L + KQ+V +D Sbjct: 241 VNSIRDDRAATFQRRYRDDVDVLLIDDIQFLQGKEQTQEEFFHTFNALHSTGKQIVLTSD 300 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 +PP +L + R+RSR + G++ + + E R +IL+ + +++I ++VL Sbjct: 301 QPPEKLTTFADRMRSRFKSGLTTDVHPPELETRIAILRKKANAE-----RMDIGDDVLEL 355 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A ++T+ REL+GA ++ S P+ A+ A +L +V + ET ++ + I Sbjct: 356 IASKISTNIRELEGALIRVAAYASLQKEPVDRAKAA-FVLKDVVPS-ETGQITVGHIIAE 413 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 A ++ ++ +D+ R R + RQ+AMYLS+ +T SFP++G+ FG RDHTTV+HA + Sbjct: 414 TAVYFGVTVDDIKGPSRSRNLTMARQIAMYLSRELTEHSFPQLGQHFGGRDHTTVMHAEK 473 Query: 478 KVEKML 483 K+ +++ Sbjct: 474 KIRQLI 479 >gi|218249778|ref|YP_002374948.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi ZS7] gi|226321746|ref|ZP_03797272.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi Bol26] gi|226735780|sp|B7J203|DNAA_BORBZ RecName: Full=Chromosomal replication initiator protein DnaA gi|218164966|gb|ACK75027.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi ZS7] gi|226232935|gb|EEH31688.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi Bol26] Length = 487 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 136/487 (27%), Positives = 245/487 (50%), Gaps = 55/487 (11%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFTKKIK 63 Query: 95 K-LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + L + ++ I ++V + P KT S+ TK +N SK + K T Sbjct: 64 EILIKNGYNNI----VIVFTNQPP---KTHSNKQETKNPALNETFSKFDKLKEKTTSKEA 116 Query: 154 ----------------------FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 F +P L R+ F FI G +N++A A+ SI++ Sbjct: 117 IQNIQDRIKMYIKKEEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKK 176 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + Sbjct: 177 Y-----NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHET 231 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 K R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + Sbjct: 232 KKFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFT 291 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R++SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R Sbjct: 292 DRLKSRFTRGLNVDISKPNFELRAAIVEKKA-----EEDGINVPKNILNLVAQKVTTNVR 346 Query: 370 ELDGAFNQLVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVA 419 +L+ A +L ++ + EI + ++ T E K+ IE+I++++ Sbjct: 347 DLEAAVTKL---KAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPNNKINIENIKKILL 403 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + I+ D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+ Sbjct: 404 RELKITHKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKI 463 Query: 480 EKMLETD 486 ++ D Sbjct: 464 DRDRNND 470 >gi|300870226|ref|YP_003785097.1| chromosomal replication initiation protein [Brachyspira pilosicoli 95/1000] gi|300687925|gb|ADK30596.1| chromosomal replication initiation protein [Brachyspira pilosicoli 95/1000] Length = 452 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 107/341 (31%), Positives = 187/341 (54%), Gaps = 16/341 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F FIEGS+N+ AA+ +AE Y NPL+I+ SVG+GKTHLLQAI Sbjct: 115 LNEYFKFDNFIEGSNNKFVFAAAKLVAEKPGREY-----NPLYIYGSVGIGKTHLLQAIG 169 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ-GKLI 276 N ++ PN +V Y+ F + ++ + N K +++D+ L+DD+Q L+ + Sbjct: 170 NYYLENNPNAKVNYIDGSGFRDEYIYGLQTKKSDNFKKKYKSLDMFLLDDLQLLESAQET 229 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 E + +L ++ KQ+V +D+PP EL +++ R+++R + + + + YE R +I+ Sbjct: 230 SKELFEIFQALDNACKQMVFVSDKPPKELRNIEARLKNRFEKSLILSIEPPQYETRLAII 289 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-TAEIADE 395 + +L D I+EEV+ ++A +TT R+++GA + I E D+ Sbjct: 290 ERKLI-----DLNTTIDEEVVKYMAENITTDVRKIEGAIRAYLSVRDLMKITPNVEECDK 344 Query: 396 L---LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L + N + K I++I+R+VA +Y I N S R + + + R VA+YL+ Sbjct: 345 LNIFKDYFTNKPKLKNATIKEIKRIVADYYGIEMNAFDSKDRTKFIAKVRHVAVYLACEY 404 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + +S EIG F +RDH +++HA K+++ L+ D + +E+ Sbjct: 405 SKKSVTEIGLEF-NRDHASIIHAREKIKEELKADSHVAREI 444 >gi|307719922|ref|YP_003891062.1| chromosomal replication initiator protein DnaA [Sulfurimonas autotrophica DSM 16294] gi|306978015|gb|ADN08050.1| chromosomal replication initiator protein DnaA [Sulfurimonas autotrophica DSM 16294] Length = 435 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 116/430 (26%), Positives = 224/430 (52%), Gaps = 46/430 (10%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 P + WIKN+Y E I LF+ ++ ++I +++ ++EK + ++ + Sbjct: 44 PNALVVNWIKNKYREKIAHLFEIKNGSKVNIKITLKN----TIEKRKTKKNV----EVKQ 95 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 N S L+ F F+ G SN+ A A +S++E Y Sbjct: 96 N-----------------SSLLNPSHSFDNFMVGGSNQFAYAAVKSVSENAGKVY----- 133 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI+ VGLGKTHL+QA N + + V+Y T E F+ F +R+ ++ Sbjct: 134 NPLFIYGGVGLGKTHLMQAAGN--VFQNEGKVVIYTTVEQFLNDFIRHVRNKTMERFQEK 191 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R D+LLIDD+QFL K IQ EF H +L + KQ++ AD+ P ++ L+ R++SR Sbjct: 192 YRKCDVLLIDDIQFLSNKEGIQEEFFHTFEALKGAGKQIILTADKHPKKIGGLEARLQSR 251 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+ + + E + +I+K + I+ K+ ++E+++ ++A + ++ RE++G Sbjct: 252 FEWGLVADIQPPELETKIAIIKKKCEIN-----KVKLSEDIVNYIATVIDSNVREIEGIL 306 Query: 376 NQLVFRHSFAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 ++L H+++ ++ +I +L +N + +E I ++VAK NI +++ S Sbjct: 307 SKL---HAYSQLMHVDIDLDFTKNVLKDQMNENRAN-LTMETITQIVAKDLNIKPSEIRS 362 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 R + +V R++++Y+ + +T + P++ + FG +DHT + H ++K+ +++ D K Sbjct: 363 KGRSKNIVYARRISIYICRELTQNTMPQLAQYFGMKDHTAISHTIKKINSLIKDDEDFKV 422 Query: 492 EVELLKRLIS 501 +++ L I+ Sbjct: 423 KIDELTNKIT 432 >gi|312149106|gb|ADQ29177.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi N40] Length = 486 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 136/486 (27%), Positives = 247/486 (50%), Gaps = 54/486 (11%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFTKKIK 63 Query: 95 K-LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS------------ 141 + L + ++ I ++V + P KT S+ TK +N SK Sbjct: 64 EILIKNGYNNI----VIVFTNQPP---KTHSNKQETKNPALNETFSKFDKLKEKTTSKEA 116 Query: 142 --------PIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 + + K+ P F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 117 IQNIQDRIKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY 176 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + Sbjct: 177 -----NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETK 231 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + Sbjct: 232 KFKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTD 291 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R++SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+ Sbjct: 292 RLKSRFTRGLNVDISKPNFELRAAIVEKKA-----EEDGINVPKNILNLVAQKVTTNVRD 346 Query: 371 LDGAFNQLVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAK 420 L+ A +L ++ + EI + ++ T E K+ IE+I++++ + Sbjct: 347 LEAAVTKL---KAYIDLDNIEIDIEIVEKIIKEIIIYEKETTYEPNNKINIENIKKILLR 403 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 I+ D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K++ Sbjct: 404 ELKITHKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKID 463 Query: 481 KMLETD 486 + D Sbjct: 464 RDRNND 469 >gi|228968641|ref|ZP_04129624.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar sotto str. T04001] gi|228791070|gb|EEM38688.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar sotto str. T04001] Length = 291 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 100/307 (32%), Positives = 174/307 (56%), Gaps = 22/307 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 3 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + G ++ +R + + ++ + I L P+ N ++ Q++ Sbjct: 63 SETLYD----LTGAKLAIRFI----IPQSQAEEDI-DLPPVKRNPAQDDSAHLPQSM--- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNR 339 +IL+ + Sbjct: 282 IAILRKK 288 >gi|160901492|ref|YP_001567073.1| chromosomal replication initiator protein DnaA [Petrotoga mobilis SJ95] gi|160359136|gb|ABX30750.1| chromosomal replication initiator protein DnaA [Petrotoga mobilis SJ95] Length = 454 Score = 186 bits (473), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 131/455 (28%), Positives = 226/455 (49%), Gaps = 52/455 (11%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L++ + D + +W + + + V + + F+K ++ R+ I +E + I Sbjct: 9 KLRSNMSRDTWNNWLTTAQILELDNKKVVVGLGNLFIKEAVEKRFGSII----KETINNI 64 Query: 105 QG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 G VE++ + + + +K A + I K P+ S + F Sbjct: 65 LGKPVEVVFKEIPISKEQKNAVNGPIIKNRPLKL-------------------SEFNPEF 105 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F +F+ G+SNR+A +A + + + NPLFI+ VGLGKTHLL AI N ++ Sbjct: 106 TFDSFVTGNSNRIAYYSALEVCK------NPGKYNPLFIYGDVGLGKTHLLHAIGNFLME 159 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-RNIDLLLIDDMQFLQGK-LIQHEF 280 P+L+V Y+TAE FM + IR + N ++ RN+D LLIDD+QFL GK +Q E Sbjct: 160 NAPDLKVKYVTAEDFMNQMMDGIRASDMENFRERFRRNVDFLLIDDVQFLIGKNTVQSEL 219 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H NSL +S KQ+V +DR P EL + PR+ SR + G+ + D ++ I K Sbjct: 220 FHTFNSLFNSRKQIVICSDRTPDELATFHPRLISRFEMGLITDIQAPDKATKYLIAKKMA 279 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH--SFAPILTAEIADELLS 398 + L + ++V ++A V T+ R+L GA L+ + S AP E A +++ Sbjct: 280 QMIS-----LQLTDDVAYYLAEHVDTNLRKLRGAIMNLLLQSQISGAPA-NIESAKTIVN 333 Query: 399 HLVNTGETK----------KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++ K ++I+ + +VA ++I+R D+ S+ R + + RQV YL Sbjct: 334 SMMRMNANKVRFQSPEVLETVKIDTVIDLVAAEFDINRKDIFSSSRKKEIALARQVLAYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 K +I + D++H+T++H+++K+E L Sbjct: 394 FKTTMKLKTKDISEKL-DKNHSTIIHSIKKIEHSL 427 >gi|222823047|ref|YP_002574620.1| chromosomal replication initiator protein DnaA [Campylobacter lari RM2100] gi|222538268|gb|ACM63369.1| chromosomal replication initiator protein DnaA [Campylobacter lari RM2100] Length = 442 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 126/463 (27%), Positives = 237/463 (51%), Gaps = 44/463 (9%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 K ++ + Y ++ L+F L +NI+ P +FL +I+ +Y + + ++ Sbjct: 9 EFKTEISNNEYNTYISHLQFSEKLSKNNILVFIAPNHFLAKFIQTKYAQKLAYFYE---- 64 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 V++ P V+ ++ I K +T+IS+ I + TI L+ F Sbjct: 65 --------VKTGINPQVKIITNNQKIEK-KHFSTDISQ---IKFQSTI-------LNPSF 105 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F +F+ G SN+ A ++I + G NP+FI+ GLGKTHLLQA+ N + Sbjct: 106 TFESFVVGDSNQFAYATCKAITDKSKLGKL---YNPIFIYGPTGLGKTHLLQAVGNVCLD 162 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEF 280 +V+Y T++ F+ F + + + +N D+LLIDD+QFL GK IQ EF Sbjct: 163 N--GYKVIYATSDNFINDFTMHLNNKTMSKFHEKYKNCDVLLIDDVQFL-GKTDKIQEEF 219 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 N + + Q++ +D PP+ L+ + R++SR G+ + + + +I+K + Sbjct: 220 FFTFNEIKEKFGQIIMTSDNPPNMLKGITERLKSRFANGIIADITPPQLDTKIAIIKKKC 279 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 + + + EV+ ++A ++ + RE++G L ++ A + EI E++ Sbjct: 280 EFNA-----IYLKPEVISYIATSMGDNIREIEGMITNL---NAQARLFNQEITLEIVKSF 331 Query: 401 V--NTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + + ETK+ + +EDI V+K YN+ ND+ SN++ + +V R+V ++L++ +T S Sbjct: 332 MKDHIKETKENISVEDILADVSKSYNLKPNDIKSNKKTQNIVMARRVVIFLARELTTMSM 391 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P++ R F +DHT + H ++K+++++ + LK VE L+ I Sbjct: 392 PQLARFFNMKDHTAISHNIKKIQELMSENENLKAIVEELRNKI 434 >gi|213865134|ref|ZP_03387253.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 282 Score = 186 bits (472), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 107/287 (37%), Positives = 171/287 (59%), Gaps = 8/287 (2%) Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 1 GNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 60 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +I Sbjct: 61 SQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAI 120 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 121 L-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVR 175 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 176 EALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTN 234 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 235 HSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 281 >gi|297158791|gb|ADI08503.1| chromosomal replication initiation protein [Streptomyces bingchenggensis BCW-1] Length = 618 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 126/350 (36%), Positives = 200/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 279 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 333 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD A + R++D+LL+DD+QFL K Sbjct: 334 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDMDILLVDDIQFLASKEST 393 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 394 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 453 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 454 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 505 Query: 393 ADELLSHLVNTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE ++ I A ++ + +DL R R +V RQ+AMYL + Sbjct: 506 TEIVLKDLIPGGEDAAPEITATAIMAATADYFGHTVDDLCGASRSRVLVTARQIAMYLCR 565 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 566 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 615 >gi|281411445|ref|YP_003345524.1| chromosomal replication initiator protein DnaA [Thermotoga naphthophila RKU-10] gi|281372548|gb|ADA66110.1| chromosomal replication initiator protein DnaA [Thermotoga naphthophila RKU-10] Length = 440 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 132/428 (30%), Positives = 210/428 (49%), Gaps = 39/428 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K +V + WF S+ N V SV F+K W++ +Y ++K Sbjct: 9 IKTRVNRKSWELWFSSFDVKSIEGNKVVFSVGNLFIKEWLEKKYYSVLSK---------- 58 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V++++ + A + A P + P+ + K ++L +PL+ + F Sbjct: 59 AVKVVLGNDATFEITYEAFEPHSSYSEPL---VKKRAVLL----------TPLNPDYTFE 105 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ G N A AA +A+ R NPLFI+ VGLGKTHLLQ+I N ++ +P Sbjct: 106 NFVVGPGNSFAYHAALEVAKHPG------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEP 159 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQHEFCHL 283 +LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q E H Sbjct: 160 DLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHT 219 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N L DS KQ+V +DR P +L R+ SR Q G+ L D E R +I + L I Sbjct: 220 FNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKNIARKMLEIE 279 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADELLSHLVN 402 E P EEVL VA V + R L GA + LV++ + + + A LL + Sbjct: 280 HGELP-----EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEIDLKEAILLLKDFIK 334 Query: 403 TGETKKMR-IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + K M I+++ +VAK + R ++LS+ R + R++ MY++K S I Sbjct: 335 SNRVKAMDPIDELIEVVAKVTGVPREEILSSSRNVKALTARRIGMYVAKNYLKSSLRTIA 394 Query: 462 RRFGDRDH 469 +F +R H Sbjct: 395 EKF-NRSH 401 >gi|325267547|ref|ZP_08134199.1| DNA-directed DNA replication initiator protein DnaA [Kingella denitrificans ATCC 33394] gi|324980897|gb|EGC16557.1| DNA-directed DNA replication initiator protein DnaA [Kingella denitrificans ATCC 33394] Length = 559 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 117/346 (33%), Positives = 188/346 (54%), Gaps = 13/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L S + F T + G N++ + A SIAE NP F++ S GLGKTHL+QA+ Sbjct: 222 LSSEYTFDTLVVGKGNQLPVQVAMSIAENPGDNM----YNPFFVYGSTGLGKTHLVQAVG 277 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P +V Y+ + ++ F + +++ K + DLL+IDD+QF+QGK Sbjct: 278 NRLLALNPAAKVRYMHSNEYLKTFMTTVKNKSWDAFKQQYLHYDLLIIDDIQFIQGKDRT 337 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF L +Q++ D+ PS LE ++ R+ SR G++V + + EMR IL Sbjct: 338 MEEFFFLFEHFHSRNQQIILTCDQLPSGLEHMEKRLISRFSWGMTVRIEPPELEMRIDIL 397 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP--ILTAEIAD 394 +++ ++K D + +E + +A+ V S REL+GA N+++ R F ++ ++A Sbjct: 398 EHK---AKKMD--IQFDEGAALFIAQNVKASVRELEGALNRVIARCRFEKRNVIDIDLAT 452 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L ++ K + + I + VA +Y I +DLL +R R + RPRQ+AM L+K +T Sbjct: 453 SALQDII-VSNYKPITADLIMKTVADYYRIRISDLLGKKRTRNIARPRQIAMALTKELTT 511 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG RDHTTV+HAV+ V K+ + L+++ L LI Sbjct: 512 LSLPAIGDAFGGRDHTTVMHAVKAVTKLRRDEPELEQDYGKLLILI 557 >gi|313635505|gb|EFS01740.1| chromosomal replication initiator protein DnaA [Listeria seeligeri FSL N1-067] Length = 296 Score = 186 bits (471), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 159/294 (54%), Gaps = 24/294 (8%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T PS + + I +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKPSPA--------LDEDGIEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 287 >gi|313640132|gb|EFS04749.1| chromosomal replication initiator protein DnaA [Listeria seeligeri FSL S4-171] Length = 287 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 105/294 (35%), Positives = 159/294 (54%), Gaps = 24/294 (8%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T PS + + I +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKPSPA--------LDEDGIEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRKK 287 >gi|323344469|ref|ZP_08084694.1| replication initiation protein DnaA [Prevotella oralis ATCC 33269] gi|323094596|gb|EFZ37172.1| replication initiation protein DnaA [Prevotella oralis ATCC 33269] Length = 469 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 129/453 (28%), Positives = 232/453 (51%), Gaps = 31/453 (6%) Query: 55 YASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 Y++WF+ + F S V + VP+ F+ +++ Y++ + K+ S+ V + R Sbjct: 25 YSTWFKPIVFESYDETKKTVLVKVPSTFVYEYLEENYVDLLKKVLGRVFSK--NVNLGYR 82 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT---ISPVFGSPLDSRF----VFS 165 +A +K + ++ + +T+ I G Q+ + V PLDS+ F+ Sbjct: 83 IMA----DKEHNITTVVEGVVGDTDPKPKAISRGNQSPSLMDAVKMQPLDSQLNPHQTFA 138 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +IEG SN++ + SIAE H T + NP+FI+ G GKTHL+ AI + P Sbjct: 139 NYIEGDSNKLPRSIGLSIAE---HP-NTAQFNPMFIYGPSGCGKTHLINAIGMKIREHYP 194 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQHEFCHLL 284 RV+Y++A F +F++A N + + + ID+L++DD+Q ++ Q+ F H+ Sbjct: 195 RKRVLYVSARLFQVQFSNATLRNSVNDFINFYQTIDVLIVDDIQEWITAVKTQNTFFHIF 254 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N L + K+++ A+DRPP +LE ++ R+ +R G+ L + ++ IL N++ Sbjct: 255 NHLFKNGKRIILASDRPPVDLEGMNDRLLTRFSCGLIAELEQPNVKLCIDILNNKI---- 310 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTG 404 L+I +EV+ +A + S R+L G N L+ +++ + + I L ++ Sbjct: 311 -HRDGLDIPKEVVEFIASSANGSVRDLQGVVNSLL---AYSVVYNSSIDMRLAERVIKRA 366 Query: 405 ---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + K + I+DI V H+N+S + S R +V RQV+MYL++ T IG Sbjct: 367 VKIDDKPLTIDDILDSVCNHFNVSATAVNSRSRKHDLVVARQVSMYLAQKYTKMPASRIG 426 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + G RDH+TV+H+ +VE+ L+ D E++ Sbjct: 427 KLVGGRDHSTVIHSCSQVEQRLKIDRLFSDEIQ 459 >gi|223888775|ref|ZP_03623366.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 64b] gi|223885591|gb|EEF56690.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 64b] Length = 486 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 132/485 (27%), Positives = 244/485 (50%), Gaps = 52/485 (10%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFTKKIK 63 Query: 95 KL------------FQEEHSRIQGVEILVRSVALPSV--------EKTASSPSITKLSPI 134 ++ F + + + ++ AL EKT S +I + Sbjct: 64 EILIKNGYNNIVIVFTNQPPKTHFNKQETKNPALNETFSKLDKLKEKTTSKEAIQNIQ-- 121 Query: 135 NTNISKSPIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 + + + K+ P F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 122 ----DRIKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY- 176 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + Sbjct: 177 ----NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKK 232 Query: 253 LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R Sbjct: 233 FKKKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDR 292 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 ++SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L Sbjct: 293 LKSRFTRGLNVDISKPNFELRAAIVEKKA-----EEDGINVPKNILNLVAQKVTTNVRDL 347 Query: 372 DGAFNQLVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAKH 421 + A +L ++ + EI + ++ T E K+ IE+I++++ + Sbjct: 348 EAAVTKL---KAYIDLDNIEIDIEIVEKIIKEIIIYEKETTYEPNNKINIENIKKILLRE 404 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 I+ D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ Sbjct: 405 LKITHKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDR 464 Query: 482 MLETD 486 D Sbjct: 465 DRNND 469 >gi|162446889|ref|YP_001620021.1| chromosomal replication initiator protein [Acholeplasma laidlawii PG-8A] gi|189044629|sp|A9NE65|DNAA_ACHLI RecName: Full=Chromosomal replication initiator protein DnaA gi|161984996|gb|ABX80645.1| chromosomal replication initiator protein [Acholeplasma laidlawii PG-8A] Length = 452 Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 121/389 (31%), Positives = 197/389 (50%), Gaps = 30/389 (7%) Query: 128 ITKLSPINTNISKSPIILGKQTISPVFGSP--------------LDSRFVFSTFIEGSSN 173 I K++ + T S +P+ L + V P L+S + F +F+ G SN Sbjct: 60 IAKINELATKYSSTPVRLKFVSQEEVIEEPVADRKLTIDYRQGNLNSTYTFDSFVVGKSN 119 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 A A +A D G NP +I VGLGKTHL+QAI N + R++Y+ Sbjct: 120 MFAFRMAMKVA--DQPGAVA---NPFYIFGDVGLGKTHLMQAIGNYILDNDVEKRILYVK 174 Query: 234 AEYFMWRFASAI--RDNCALNLKDSLRNIDLLLIDDMQFL-QGKLIQHEFCHLLNSLLDS 290 A+ F+ F S + N ++ID++L+DD+Q + Q EF L + L + Sbjct: 175 ADNFIEDFVSLLSRNKNKTEEFNAKYKDIDVILVDDIQIMANASKTQMEFFKLFDYLYLN 234 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ+V +D+P S+L ++ PR+ +R + G+SV + + + E R SILK + A D L Sbjct: 235 NKQIVITSDKPASQLTNIMPRLTTRFEAGLSVDIQIPELEHRISILKRKTATL---DANL 291 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNT----GE 405 ++E++L +A + RE++GA +L+ + +F +T + +E L ++ T + Sbjct: 292 EVSEDILTFIASQFAANIREMEGALIRLISYAQTFNLEITMNVVEEALGAVLKTKKKTND 351 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 + + IQ +VA ++ +S DL+ +R PR +AMYL K+ + IG F Sbjct: 352 LNENNYDKIQSIVADYFQVSLPDLIGKKRHAKFTLPRHIAMYLIKLKYNIPYKTIGSLFN 411 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVE 494 DRDH+TVL A KVE+ + D LK V+ Sbjct: 412 DRDHSTVLSACEKVERDMRMDSNLKFAVD 440 >gi|47097243|ref|ZP_00234805.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 1/2a F6854] gi|47014398|gb|EAL05369.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 1/2a F6854] Length = 284 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 105/291 (36%), Positives = 157/291 (53%), Gaps = 24/291 (8%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 KN P Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ Sbjct: 17 KNMSKPS-YDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFD 75 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 V + + E T P N + + I +GK ++P R+VF T Sbjct: 76 VR-FIDGEQEENFEYTVIKP--------NPALDEDGIEIGKHMLNP--------RYVFDT 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N Sbjct: 119 FVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDN 173 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N Sbjct: 174 AKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFN 233 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 +L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL Sbjct: 234 TLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAIL 284 >gi|291452646|ref|ZP_06592036.1| chromosomal replication initiator protein dnaA [Streptomyces albus J1074] gi|291355595|gb|EFE82497.1| chromosomal replication initiator protein dnaA [Streptomyces albus J1074] Length = 648 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 200/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLF++ GLGKTHLL AI Sbjct: 309 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFVYGESGLGKTHLLHAIG 363 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 364 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKEST 423 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 424 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 483 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 484 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 535 Query: 393 ADELLSHLVNTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE ++ I A ++ ++ DL + R R +V RQ+AMYL + Sbjct: 536 TEIVLKDLIPGGEDAAPEITATAIMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCR 595 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 596 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 645 >gi|239980787|ref|ZP_04703311.1| chromosomal replication initiation protein [Streptomyces albus J1074] Length = 697 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 124/350 (35%), Positives = 200/350 (57%), Gaps = 21/350 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLF++ GLGKTHLL AI Sbjct: 358 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFVYGESGLGKTHLLHAIG 412 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 413 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKEST 472 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 473 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 532 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 533 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 584 Query: 393 ADELLSHLVNTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE ++ I A ++ ++ DL + R R +V RQ+AMYL + Sbjct: 585 TEIVLKDLIPGGEDAAPEITATAIMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCR 644 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 645 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 694 >gi|14194681|sp|Q9KHU8|DNAA_ACHLA RecName: Full=Chromosomal replication initiator protein DnaA gi|8515411|gb|AAF75986.1|AF248639_2 DNA replication initiator protein [Acholeplasma laidlawii PG-8A] Length = 445 Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 121/389 (31%), Positives = 197/389 (50%), Gaps = 30/389 (7%) Query: 128 ITKLSPINTNISKSPIILGKQTISPVFGSP--------------LDSRFVFSTFIEGSSN 173 I K++ + T S +P+ L + V P L+S + F +F+ G SN Sbjct: 60 IAKINELATKYSSTPVRLKFVSQEEVIEEPVADRKLTIDYRQGNLNSTYTFDSFVVGKSN 119 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 A A +A D G NP +I VGLGKTHL+QAI N + R++Y+ Sbjct: 120 MFAFRMAMKVA--DHPGAVA---NPFYIFGDVGLGKTHLMQAIGNYILDNDVEKRILYVK 174 Query: 234 AEYFMWRFASAI--RDNCALNLKDSLRNIDLLLIDDMQFL-QGKLIQHEFCHLLNSLLDS 290 A+ F+ F S + N ++ID++L+DD+Q + Q EF L + L + Sbjct: 175 ADNFIEDFVSLLSRNKNKTEEFNAKYKDIDVILVDDIQIMANASKTQMEFFKLFDYLYLN 234 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ+V +D+P S+L ++ PR+ +R + G+SV + + + E R SILK + A D L Sbjct: 235 NKQIVITSDKPASQLTNIMPRLTTRFEAGLSVDIQIPELEHRISILKRKTATL---DANL 291 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNT----GE 405 ++E++L +A + RE++GA +L+ + +F +T + +E L ++ T + Sbjct: 292 EVSEDILTFIASQFAANIREMEGALIRLISYAQTFNLEITMNVVEEALGAVLKTKKKTND 351 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 + + IQ +VA ++ +S DL+ +R PR +AMYL K+ + IG F Sbjct: 352 LNENNYDKIQSIVADYFQVSLPDLIGKKRHAKFTLPRHIAMYLIKLKYNIPYKTIGSLFN 411 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVE 494 DRDH+TVL A KVE+ + D LK V+ Sbjct: 412 DRDHSTVLSACEKVERDMRMDSNLKFAVD 440 >gi|281421238|ref|ZP_06252237.1| bacterial DnaA protein helix-turn-helix protein [Prevotella copri DSM 18205] gi|281404773|gb|EFB35453.1| bacterial DnaA protein helix-turn-helix protein [Prevotella copri DSM 18205] Length = 471 Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 128/460 (27%), Positives = 229/460 (49%), Gaps = 28/460 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K+ V Y +WF+ + F S + L VP+ F+ +++ +++ ++K+ Sbjct: 16 IKDSVTEQQYNTWFKPIVFESYKPSTKTLLVQVPSPFVYEYLEQNFVDLLSKVLHRNFG- 74 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP--------IILGKQTISPVFG 155 +G+ + R V +K + P + +++K Sbjct: 75 -EGIRLTYRVVT----DKEHKLSQDIEADPDDADMAKQTRERAQQTAAQPAAPQQQEDID 129 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + LD + F+ ++EG SN++ + SIAE H TT + NP+FI+ G GKTHL+ A Sbjct: 130 TQLDPKLTFNNYMEGDSNKLPRSVGLSIAE---HPNTT-QFNPMFIYGPSGSGKTHLVNA 185 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + + P RV+Y++A F ++ A+ N + + + ++ID+L++DD+Q GK Sbjct: 186 IGLKAKQMYPQKRVLYVSARLFQTQYTDAVLHNASNDFINFYQSIDMLIVDDIQEWAGKA 245 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 + F H+ N L + K+++ A DRPP EL+ + R+ +R G+ L + ++ Sbjct: 246 KTLNTFFHIFNHLFRNGKRIILACDRPPVELKDMPDRLLTRFSCGLVCELEKPNIQLCVD 305 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL N++ + D L I +V+ +A+T S R+L GA N L+ + + + +A Sbjct: 306 ILSNKI----RRD-GLKIPADVISFIAQTCNGSVRDLQGAVNGLLAYSIVYNSSIDIRLA 360 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + ++ V + K + I+DI V HYN++ + S R R V RQV MYL++ T Sbjct: 361 ERVIKRAVKVDD-KPLTIDDIVETVCHHYNVTVTAVNSKSRKRDYVVARQVTMYLAQKYT 419 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 IG+ G+RDH+TV+H+ KVE+ L+ D E+ Sbjct: 420 KMPASRIGKLVGNRDHSTVIHSCSKVEERLKIDAGFSDEL 459 >gi|255323604|ref|ZP_05364734.1| chromosomal replication initiator protein DnaA [Campylobacter showae RM3277] gi|255299318|gb|EET78605.1| chromosomal replication initiator protein DnaA [Campylobacter showae RM3277] Length = 436 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 125/462 (27%), Positives = 232/462 (50%), Gaps = 46/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVH--LSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 L ++ P + + ++LKF+ N + + P + +I+ +Y I LF+ Sbjct: 10 LSKEILPSEFECYIKQLKFNEKSSNSTNVVFNAPNEIIAKFIQTKYASKIAHLFEV---- 65 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 KT P I + T + + K+ + S L+ + Sbjct: 66 -----------------KTGQKPVINVQAATKTQSKPAKKVDVKEIKAQ--SSLLNPSYT 106 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G SN+ A +A++++E Y NPLFI+ GLGKTHLLQ++ N + Sbjct: 107 FENFVVGDSNQFAFLSAKAVSEQLGKIY-----NPLFIYGPTGLGKTHLLQSVGNFCL-- 159 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFC 281 V+ +T+E F+ F + ++ ++ RN D+LLIDD+QFL GK IQ EF Sbjct: 160 NGGKMVICVTSEQFITDFTYNLNNHSMERFREKYRNCDVLLIDDVQFL-GKTDKIQEEFF 218 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L Q+V +DR P L+ + R+R+R + G+ + + + + +I+K + Sbjct: 219 HTFNELHAKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIIADITPPELDTKIAIIKKKC- 277 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 E K+ ++++V+ ++A + + RE++ A L +++A ++ EI E +++ Sbjct: 278 ----EFDKIYLDKDVINYIATNMGDNIREIESAIINL---NAYARLMRQEITLEFAKNIL 330 Query: 402 NTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 +K + +E+I +V+K N+ +++ S R + +V R++ +YL+K +TP S P Sbjct: 331 RDQIKEKRENINLENIVEIVSKELNVKPSEMKSKSRSKNIVEARRIVIYLAKNLTPNSMP 390 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +I + F +DH+ V H+++K+ +++ET+ K VE LK I Sbjct: 391 QIAQFFNMKDHSAVSHSIKKINELIETNEYFKVRVEELKNKI 432 >gi|114799907|ref|YP_759293.1| chromosomal replication initiator protein DnaA [Hyphomonas neptunium ATCC 15444] gi|114740081|gb|ABI78206.1| chromosomal replication initiator protein DnaA [Hyphomonas neptunium ATCC 15444] Length = 457 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 138/475 (29%), Positives = 224/475 (47%), Gaps = 36/475 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN---IVHLSVPTNFLKAWIKNRYLETIT 94 I+ V L++++ + W L+ + HN IV P F + + +++L I Sbjct: 2 IWNDVRDVLRDKITESEFTRWIADLRVVAE-HNGEMIVAARDPLAFDR--VSSQHLRVIE 58 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 KL+ + ++++ A + P +P+ + +P Sbjct: 59 KLWAAADPAERALKLICWRNAPADLRDLVDDPWAVAETPVPA-----------EPQAPAT 107 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S F T + G SN +A+T A+ IA G T I+ G GKTHL+Q Sbjct: 108 SSGAGPAMTFDTLVTGPSNEIAVTLAKRIAAGLPAGTATT-----LIYGPPGTGKTHLMQ 162 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ + +R R+VYLTAE FM + ++ +LK LR +LLIDD+ + GK Sbjct: 163 ALRLEAARRDTARRIVYLTAEEFMSAYLDGVKARDTSDLKKRLRAASILLIDDLHRIAGK 222 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 + E + + + QVV D P + R+RS ++G +V + L D MR Sbjct: 223 PGTETELYQNIREVTSNGGQVVLVGDSAPGDASGFGQRMRSEIKGATAVEVELPDAGMRR 282 Query: 334 SILKNRLAISQKED-PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF---APILT 389 IL RLA E+ P + +E++ + + GREL GA L F AP + Sbjct: 283 EILI-RLAGHIAENHPAFVLTDEMMQRLNSGIRGPGRELTGAVWSLYTEAGFGERAPTM- 340 Query: 390 AEIADELLSHLV--NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 E+L +V + GE ++ I+ I+R K + I++ DL ++R V PRQ+AMY Sbjct: 341 -----EMLDRIVRRHAGEQREPSIDVIKRATLKVFPIAKTDLEGPSKMRGFVYPRQIAMY 395 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + MT +SFP+IGR FG RDHTTVL+A R+++ + D L ++ ++ ++ E Sbjct: 396 LCRTMTRKSFPQIGRAFGKRDHTTVLYAYRRMDGDIGKDQELAADIARVQTVVLE 450 >gi|281356509|ref|ZP_06243001.1| chromosomal replication initiator protein DnaA [Victivallis vadensis ATCC BAA-548] gi|281317201|gb|EFB01223.1| chromosomal replication initiator protein DnaA [Victivallis vadensis ATCC BAA-548] Length = 460 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 144/480 (30%), Positives = 245/480 (51%), Gaps = 44/480 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ ++ I + RLK Q +Y WFQ+L S+ ++ L V +F + I ++Y + Sbjct: 6 MSAADVWAIAAGRLKTQ-NEHLYRQWFQKLTPLSLEGRMLKLGVSDDFFGSIITDQYDDL 64 Query: 93 ITKLFQE------EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 I + +E +++ G E ++ P PS P+ +S + Sbjct: 65 IIQALEEIDGSDFDYALEPGHEPVIEPEPRPVAAAAPVRPSEPAAEPVQPRRPRSCM--- 121 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 F F+ G NR A AA++ AE NPL+++ + G Sbjct: 122 -------------DEHTFENFVVGGENRHAFAAAKTAAEEPG------LYNPLYLYGASG 162 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSLRNIDLLLI 265 +GKTHLLQA+ +R P V Y T + + F + ++ + +L+ + S+R++D+LL+ Sbjct: 163 VGKTHLLQAVTVEVRRRNPKAVVRYATCDELLNDFYNLLQQHRSLSEFRSSVRDVDVLLV 222 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+ L K +Q EF +L N+L KQ++ +DR P E+ LD R+ SR + G++ + Sbjct: 223 DDVHSLAKKTQMQEEFFNLFNTLYSQRKQIILTSDRQPCEISDLDKRLESRFESGMTAEV 282 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 G+ ++E R +IL+ + P + +E L +A ++++ R L GAF +L S+ Sbjct: 283 GVPEFEARLAILRMWRNDVLNKAP---LGDEFLEFLAANISSNVRRLHGAFIRLA---SY 336 Query: 385 API-----LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 A + LT E A+ELL S L ++ + ++ IQR VA H+ ++ D+L +R R + Sbjct: 337 ASLSGNDKLTIEQAEELLHSQLAQESASRDISLDSIQRAVAGHFGVTLTDILGEKRTRGI 396 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 PR +AMYL + +T S EIG FG R+H TVLHA +KV ++ + T+++ V LKR Sbjct: 397 AEPRMIAMYLCRELTGNSSNEIGAAFG-RNHATVLHAEKKVPELCRDNETIRRSVTQLKR 455 >gi|326560701|gb|EGE11069.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 46P47B1] gi|326562316|gb|EGE12642.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 103P14B1] gi|326563092|gb|EGE13365.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 12P80B1] gi|326571725|gb|EGE21738.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis BC8] gi|326571820|gb|EGE21826.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis BC7] gi|326574361|gb|EGE24304.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis CO72] gi|326575520|gb|EGE25445.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 101P30B1] gi|326578061|gb|EGE27921.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis O35E] Length = 467 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 142/480 (29%), Positives = 228/480 (47%), Gaps = 50/480 (10%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ + L+ + Y W LK V + L P +K+ YL IT Sbjct: 20 ERVWQLCLPDLQFAMADKDYRQWIAPLK-AEVNDTELLLLAPNMMWVRHVKDNYLSQITD 78 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L +Q I+ V I + + +P+ P+ K K+ + V Sbjct: 79 LAYQHGKGVIKSVRIEMVASTIPN------DPATKKAKTNKKTSKKTGV---------VE 123 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS-HGYTTVRLNPLFIHASVGLGKTHLL 213 G P+D F F FI+G SN A A ++ +S H Y P+FI+ S GLGKTHL+ Sbjct: 124 GLPIDPGFTFDVFIKGKSNASAYNACNELSRKESKHNY-----GPIFIYGSSGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+A+ K + Y T ++F A R N + ++ + DLL+IDD+ + G Sbjct: 179 HAMAHRYQKY--GKQFFYFTKDHFYKITLEAFRTNDIVQMEKEICQADLLIIDDVHMVSG 236 Query: 274 KLIQHEFCHLLNSLLDS------AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 + +L L D+ KQVV A+DRPPS++ S R SRL + + + Sbjct: 237 SKAP-KVTEILMKLFDTFSAGNTQKQVVLASDRPPSQMTSFGERYISRLSSCLQLSIEPP 295 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 D EMR IL+ + + L + E +++A+ + R L+GA ++ + Sbjct: 296 DMEMRIQILEKKAQMLN-----LLLPRECALYMAQNLPPDVRGLEGALKRVQLSATILRN 350 Query: 386 -----PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 P++ I D++ + + E+I+ +VA++Y IS DL+S +R R + R Sbjct: 351 EPVSLPLVKDAIKDQV------QARARALNAENIRDLVAEYYEISPKDLMSKKRARYIAR 404 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM L + +T SFPEIG+ FG RDHTTV+HA K+E++ D ++K+ LK ++ Sbjct: 405 PRQMAMALIRELTRDSFPEIGQVFGGRDHTTVMHACEKIEELRTQDAKIQKDYHSLKMML 464 >gi|329938638|ref|ZP_08288034.1| chromosomal replication initiator protein [Streptomyces griseoaurantiacus M045] gi|329302129|gb|EGG46021.1| chromosomal replication initiator protein [Streptomyces griseoaurantiacus M045] Length = 721 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 214/394 (54%), Gaps = 27/394 (6%) Query: 120 EKTASSPSITKLSPINTNI--SKSPIILGKQTISPVF-GSP---LDSRFVFSTFIEGSSN 173 E + + + + P+ ++ + +P L Q G P L+ +++F TF+ G+SN Sbjct: 337 EPSPGTGHVHRGGPVGPHLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASN 396 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A AA ++AE + Y NPLFI+ GLGKTHLL AI + + P RV Y++ Sbjct: 397 RFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVS 451 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ K Sbjct: 452 SEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANK 511 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Q LN Sbjct: 512 QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-----LNA 566 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKK 408 EVL +A ++ + REL+GA ++ +FA + + + + +L L+ GE Sbjct: 567 PPEVLEFIASRISRNIRELEGALIRVT---AFASLNRQPVDLGLTEIVLKDLIPGGEDTA 623 Query: 409 MRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 I I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG +FG Sbjct: 624 PEITAPAIMAATAAYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGG 683 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 684 RDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 717 >gi|329769245|ref|ZP_08260663.1| chromosomal replication initiator protein DnaA [Gemella sanguinis M325] gi|328839336|gb|EGF88917.1| chromosomal replication initiator protein DnaA [Gemella sanguinis M325] Length = 491 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/341 (32%), Positives = 188/341 (55%), Gaps = 26/341 (7%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ G+ N A A ++A+ Y NPLFI+ GLGKTHLL AI Sbjct: 149 LNKNYTFDNFVVGAGNIYAHNVAYNVADSPGGIY-----NPLFIYGGAGLGKTHLLHAIG 203 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIR------DNCALNLKDSLRNIDLLLIDDMQFL 271 N K P ++ +++E F+ F ++I+ DN + + R+ID LLIDD+QFL Sbjct: 204 NEMEKNFPEFKIECISSEKFLNEFLASIKPMKNKNDNADEDFRRKYRDIDALLIDDIQFL 263 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q+ F H N L + KQ+V +D+ PS+L L+ R+ +R + GV+ + D+E Sbjct: 264 SGKTETQNAFFHTFNELQMNQKQIVLISDKSPSQLNDLEDRLVTRFEQGVTTDITPPDFE 323 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 R +ILK + E ++EE L++++ V+++ REL+G + S + + Sbjct: 324 TRMAILKYKCTQFDIE-----LDEETLIYISNNVSSNIRELEGVLKSI---KSMSATMNK 375 Query: 391 E----IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + IA+E+L V K + + I + Y+I ++D+LS+ R + VV+ R +A+ Sbjct: 376 KPSLHIAEEILKD-VRKAPRKNISPDHIINACSDFYSIRKDDILSSTRKKEVVQARNIAI 434 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 YL + +T SFP IG+ F ++DHT++L++ K+ K+ E + Sbjct: 435 YLCRELTNLSFPAIGQHF-NKDHTSILYSFNKIAKLNEDEF 474 >gi|296112231|ref|YP_003626169.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis RH4] gi|295919925|gb|ADG60276.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis RH4] gi|326561743|gb|EGE12078.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis 7169] gi|326569036|gb|EGE19105.1| chromosomal replication initiator protein DnaA [Moraxella catarrhalis BC1] Length = 467 Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 142/480 (29%), Positives = 228/480 (47%), Gaps = 50/480 (10%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ + L+ + Y W LK V + L P +K+ YL IT Sbjct: 20 ERVWQLCLPDLQFAMADKDYRQWIAPLK-AEVNDTELLLLAPNMMWVRHVKDNYLSQITD 78 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L +Q I+ V I + + +P+ P+ K K+ + V Sbjct: 79 LAYQHGKGVIKSVRIEMVASTIPN------DPATKKAKTNKKTSKKTGV---------VE 123 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS-HGYTTVRLNPLFIHASVGLGKTHLL 213 G P+D F F FI+G SN A A ++ +S H Y P+FI+ S GLGKTHL+ Sbjct: 124 GLPIDPGFTFDVFIKGKSNASAYNACNELSRKESKHNY-----GPIFIYGSSGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+A+ K + Y T ++F A R N + ++ + DLL+IDD+ + G Sbjct: 179 HAMAHRYQKY--GKQFFYFTKDHFYKITLEAFRTNDIVQMEKEICQADLLIIDDVHMVSG 236 Query: 274 KLIQHEFCHLLNSLLD------SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 + +L L D + KQVV A+DRPPS++ S R SRL + + + Sbjct: 237 SKAP-KVTEILMKLFDAFSAGNTQKQVVLASDRPPSQMTSFGERYISRLSSCLQLSIEPP 295 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 D EMR IL+ + + L + E +++A+ + R L+GA ++ + Sbjct: 296 DMEMRIQILEKKAQMLN-----LLLPRECALYMAQNLPPDVRGLEGALKRVQLSATILRN 350 Query: 386 -----PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 P++ I D++ + + E+I+ +VA++Y IS DL+S +R R + R Sbjct: 351 EPVSLPLVKDAIKDQV------QARARALNAENIRDLVAEYYEISPKDLMSKKRARYIAR 404 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM L + +T SFPEIG+ FG RDHTTV+HA K+E++ D ++K+ LK ++ Sbjct: 405 PRQMAMALIRELTRDSFPEIGQVFGGRDHTTVMHACEKIEELRTQDAKIQKDYHSLKMML 464 >gi|166365030|ref|YP_001657303.1| chromosomal replication initiation protein [Microcystis aeruginosa NIES-843] gi|189044599|sp|B0JGA6|DNAA_MICAN RecName: Full=Chromosomal replication initiator protein DnaA gi|166087403|dbj|BAG02111.1| chromosomal replication initiator protein [Microcystis aeruginosa NIES-843] Length = 444 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 137/449 (30%), Positives = 229/449 (51%), Gaps = 40/449 (8%) Query: 54 VYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 + +WFQ ++ + + F+ ++ YL TI ++ Q+ I G + Sbjct: 24 AFETWFQTATVKEWQNDRLVIQAANPFILNHLQKNYLSTIAEVVQD----IVGYPV---- 75 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 ++ TA + + +T++ +SP + L+ ++ FS F+ G +N Sbjct: 76 ----EIQLTAQQGDLIAIFQPHTSLESE--------LSPT--NQLNPKYNFSRFVVGPTN 121 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R+A AA ++AE+ + NPLF+ VGLGKTHL+QAI + ++ P RV Y++ Sbjct: 122 RMAHAAALAVAELPGREF-----NPLFLCGGVGLGKTHLMQAIGHYRLELYPQSRVFYVS 176 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 E F +AIR + + ++ R+ D+LL+DD+QF++GK Q EF H N+L ++ K Sbjct: 177 TEQFTNDLITAIRQDSMESFRNHYRHADILLVDDLQFIEGKEYTQEEFFHTFNTLHEAGK 236 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QVV A+DR P ++ SL R+ SR G+ + D E R +IL+ + E L + Sbjct: 237 QVVLASDRLPKQIPSLQDRLISRFSMGLVADIQAPDIETRMAILQKK-----AEYENLRL 291 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETK-KMRI 411 EV+ ++A T++ REL+GA L+ ++ I + E ++ ++N K Sbjct: 292 PREVIEYIAVNYTSNIRELEGA---LIRATTYISISGLPMTVENIAPVLNPPMAKIATSP 348 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E I +VA+ + +S DL N R R + RQ+ MYL + T S P IG FG +DHTT Sbjct: 349 EIIMAVVAEKFQLSIADLKGNSRRREISFARQIGMYLMRQHTDLSLPRIGEEFGGKDHTT 408 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLI 500 V+++ K+ D L+ E+L +LI Sbjct: 409 VIYSCDKINLSQHQDRQLQ---EILAQLI 434 >gi|224534658|ref|ZP_03675230.1| chromosomal replication initiator protein DnaA [Borrelia spielmanii A14S] gi|224513906|gb|EEF84228.1| chromosomal replication initiator protein DnaA [Borrelia spielmanii A14S] Length = 484 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 129/479 (26%), Positives = 244/479 (50%), Gaps = 42/479 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ + I Sbjct: 4 SKNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFTKKIK 63 Query: 95 KLFQEEHSRIQGVEILV-----RSVALPSVEKTASSPSITKLSPINTNI-SKSPI----- 143 ++ ++ V I+ ++ A + + + K + N SK PI Sbjct: 64 EILT--NNGYDNVVIVFTNQSPKTYANKQESEKTNFNAFPKFDKLKGNTPSKEPIQSIKD 121 Query: 144 -----ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 I ++ ++ + L R+ F FI G +N++A A+ SI++ Y NP Sbjct: 122 RIKMYIKKEEGLTNLKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY-----NP 176 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K R Sbjct: 177 CLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKKKYR 236 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR Sbjct: 237 YLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKSRFT 296 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A + Sbjct: 297 RGLNVDISKPNFELRVAIIEKKA-----EEDGIKVPKNILNLVAQKVTTNVRDLEAAVTK 351 Query: 378 LVFRHSFAPILTAEI---------ADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNISRN 427 L ++ + EI + ++ T E + K+ IE+I++++ + I+ Sbjct: 352 L---KAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPSNKINIENIKKILLRELKIAHK 408 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 409 DIEGHSKKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDRDRNND 467 >gi|294673982|ref|YP_003574598.1| chromosomal replication initiator protein DnaA [Prevotella ruminicola 23] gi|294471753|gb|ADE81142.1| chromosomal replication initiator protein DnaA [Prevotella ruminicola 23] Length = 473 Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 128/458 (27%), Positives = 230/458 (50%), Gaps = 39/458 (8%) Query: 55 YASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 Y +WF + F S + V + VP+ ++ +++ Y+ ++K+ + R+ G + + Sbjct: 25 YKTWFAPIVFESFDEANRSVLVQVPSRYVFEFLEQYYVGLLSKVLE----RVFGTNVKLN 80 Query: 113 SVALPSVEKTASSPSIT----------KLSPINTNISKSPIILG---KQTISPVFGSPLD 159 + TA +T + P +++K+P +L +Q ++P LD Sbjct: 81 YRIVEVKAATAKGHDVTTDVESEGPSLETVPARQHLNKAPNVLDAPRQQQLNP----QLD 136 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++ F +IEG+SN++ T SIAE G TT NP FI+ G GKTHL+ AI Sbjct: 137 TKKGFHNYIEGNSNKLPRTVGLSIAE--HPGKTT--FNPFFIYGPSGCGKTHLINAIGLK 192 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQH 278 + PN RV+Y++A F +F ++R N + + ++ID+L++DD+Q ++ Sbjct: 193 CCELYPNKRVLYVSARLFQVQFTDSVRQNTTNDFINFYQSIDVLIVDDIQEWVNSPKTLD 252 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 F H+ + L KQ++ A+DRPP +L + R+ +R G+ L + ++ IL Sbjct: 253 TFFHIFDHLFRIGKQIILASDRPPVDLTGVKDRLLTRFACGLIAELEKPNVQLCVDILNA 312 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 + K D L I +V+ ++A+T S R+L+G N L+ +++ + + I +L Sbjct: 313 KC----KRD-GLKIPADVIEYIAQTANGSVRDLEGVVNSLM---AYSIVYNSNIDMKLAE 364 Query: 399 HLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + I+DI V HY +S+ + S R R V+ RQ++MYL++ T Sbjct: 365 RVIKRSVKVDNHPLTIDDILDKVCNHYGVSQQSVFSKSRKRDFVQARQISMYLAQKHTKM 424 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 IG+ G RDH+TV+H+ VE+ L+ D E+ Sbjct: 425 PSSRIGQLIGGRDHSTVIHSCNAVEQRLKIDKAFVAEL 462 >gi|325860078|ref|ZP_08173204.1| chromosomal replication initiator protein DnaA [Prevotella denticola CRIS 18C-A] gi|325482363|gb|EGC85370.1| chromosomal replication initiator protein DnaA [Prevotella denticola CRIS 18C-A] Length = 468 Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 127/454 (27%), Positives = 232/454 (51%), Gaps = 32/454 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K V + +WF+ + S + + VP+ F+ +++ Y++ + K+ +R Sbjct: 16 IKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEEHYVDLLRKVL----TR 71 Query: 104 I--QGVEILVRSVA-----LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + QGV++ R + L + + I+ P T ++SP +L T+ S Sbjct: 72 VFGQGVQLTYRVMVDQEHHLSQDLQQDDAEEISSQRP-TTRGNQSPTVL--DTVPQDIDS 128 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LD F+ ++EG SN++ + SIAE H TT + NP+FI+ G GKTHL+ AI Sbjct: 129 QLDPHKSFNNYVEGDSNKLPRSIGLSIAE---HPNTT-QFNPMFIYGPSGCGKTHLVNAI 184 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKL 275 + P RV+Y++A F ++ ++R N + + + ID+L++DD+Q + Sbjct: 185 GLRVKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDIQEWATATK 244 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L + ++ I Sbjct: 245 TQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKPNVQLCIDI 304 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L N++ K D L I E+V+ ++ T S R+L G N L+ +++ + + I Sbjct: 305 LHNKI----KRD-GLCIPEDVVRFISETANGSVRDLQGVINSLL---AYSVVYNSNIDMR 356 Query: 396 LLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L ++ + + + I+DI V HYN++ + S R + +V RQV+MY+++ Sbjct: 357 LAERVIKRAVKIDDEPLTIDDILDKVCSHYNVTTTAVNSRSRKKDIVMARQVSMYMAQKY 416 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 T IG+ G+RDH+TV+H+ K+E L+ D Sbjct: 417 TKMPASRIGKLVGNRDHSTVIHSCSKIEDRLKID 450 >gi|237751287|ref|ZP_04581767.1| chromosomal replication initiator protein dnaA [Helicobacter bilis ATCC 43879] gi|229372653|gb|EEO23044.1| chromosomal replication initiator protein dnaA [Helicobacter bilis ATCC 43879] Length = 440 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 122/461 (26%), Positives = 228/461 (49%), Gaps = 40/461 (8%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETITKLFQEEHS 102 RL++++ + Y + ++ F S+ HL P F+ W KN+Y + + K+ + + Sbjct: 9 RLQHEIPENEYQQYISKISFDSMNSTPSHLIFIAPNIFIANWAKNKYTKLMLKILEVKTI 68 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 +E + ++ + P P+ N K I QT ++ Sbjct: 69 DEIKIEFITKN--------QHNKP------PVENNKDKKYITTNNQTF-------INKNV 107 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++FI G N+ A A+ IA+ + G + NPL I+ + GLGKTHLL AI NA + Sbjct: 108 SFNSFIVGECNKFAFETAKEIAK--NQG----KWNPLLIYGNTGLGKTHLLYAICNAVYE 161 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 R PN ++VY+TAE + I++N + ++ R+ D LLIDD+QFL Q EF Sbjct: 162 RTPNAKIVYITAESMFNEYRHRIQNNTMQHFRERFRSCDYLLIDDVQFLSNTDKFQEEFF 221 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N ++ Q+V +D+ P ++ L+ R++SR GG+ + + +M+ +I+K + A Sbjct: 222 NTFNVIVQEGGQIVMTSDKAPKLIDKLEKRLKSRFAGGMMTKIESPELDMKINIIKQKCA 281 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHL 400 ++ + + ++ +A + + RE++G + S I +T EI +L Sbjct: 282 LNN-----ITLEPNIINFIATQLHDNIREIEGTIIDIYANMSIMNIPITLEIVKNILKD- 335 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV-RPRQVAMYLSKIMTPRSFPE 459 E K +D+ ++A+ YNI +++ + R + ++ R R++ Y+++ +FP Sbjct: 336 -REIEEKATNFDDVVNLIAREYNIKPSEIKTKTRGKKIIARSRKIVAYIAREAINTTFPH 394 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRL 499 I +DH+ V ++ +++ +E D LK EV+ LL +L Sbjct: 395 IATELNLKDHSAVSKQIKSIKQEMEKDNALKIEVQNLLSKL 435 >gi|297243220|ref|ZP_06927155.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis AMD] gi|296888754|gb|EFH27491.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis AMD] Length = 537 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 121/351 (34%), Positives = 191/351 (54%), Gaps = 22/351 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++ F TF+ G SNR A T A ++AE + NPL I+ GLGKTHLL AI Sbjct: 191 LNTCATFDTFVPGDSNRFARTVALAVAEGSGRDF-----NPLCIYGGSGLGKTHLLNAIG 245 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQ 272 N ++ + +L+V Y+T+E F F A++ + R +D+LLIDD+QFL Sbjct: 246 NYALVKDSSLKVRYVTSEEFTNEFIEALQTPNQSQGQIADFNRRYREVDVLLIDDIQFLG 305 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H NSL + K++V A+D P L+ + R+ SR + G++V + D E Sbjct: 306 GKEATLEQFFHTFNSLYQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDIKPPDLET 365 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ +++ N+ +VL +A T + REL+GA ++ S + P+ Sbjct: 366 RIAILRMMASMNH-----CNVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSK 420 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A++ L T ++R DI VA++++++ ++L+ +R + V RQ+AMYL+ Sbjct: 421 A-LAEQALQDFFATD--IEVRPTDIISQVAQYFHMTFDELVGRQRTKNVALARQIAMYLA 477 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE-KMLETDITLKKEVELLKRL 499 + MT S +IG FG RDHTTV+HA +V +M E +EL RL Sbjct: 478 REMTSMSLVDIGEVFGGRDHTTVMHAYTRVSGEMQEKQEIYNYVMELTVRL 528 >gi|300087140|ref|YP_003757662.1| chromosomal replication initiator protein DnaA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526873|gb|ADJ25341.1| chromosomal replication initiator protein DnaA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 463 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 125/346 (36%), Positives = 187/346 (54%), Gaps = 16/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 + ++ F++FI G+SNR+A AA S A Y NPLFIH S GLGKTHLLQAI Sbjct: 127 FNPKYNFNSFIVGNSNRMAHAAALSAAHQSGQAY-----NPLFIHGSSGLGKTHLLQAIG 181 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 + RV Y++ E F F +A+++ A ++ RN+D+LLIDD+QF+ GK Sbjct: 182 QTA--GDEGRRVRYVSGEQFTSEFVAALKERRADEFRELYRNVDVLLIDDIQFIAGKAQT 239 Query: 278 HE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 E F H N L ++ KQ+V +AD PP E+ L+ R+RSR + G++ + D + R SIL Sbjct: 240 EESFFHTFNELHNNGKQIVLSADSPPREISQLEDRLRSRFEWGLTTEIFPPDEKTRLSIL 299 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADE 395 K R E+ I +VL ++A V + REL+G N+ L + +T E+A + Sbjct: 300 KTR-----AEETGAEITPDVLDYLASEVIRNIRELEGNLNRVLAYSRLLRSAITPEVARQ 354 Query: 396 LLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L ++ + E + VA+ + + DLL RR + RQ+AMY+ K Sbjct: 355 ALKNIAGDPAPGVNDSPEKLLGTVAECFEMCPEDLLGRRRDKETAGARQMAMYVLKSRNI 414 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE-VELLKRL 499 S EIGR G R TV HA K+ + L+ + LK++ +E+ +RL Sbjct: 415 WSMNEIGRVIGGRSAATVSHACDKITRELDYNPLLKRKLIEIERRL 460 >gi|283782562|ref|YP_003373316.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 409-05] gi|298253031|ref|ZP_06976823.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 5-1] gi|283442037|gb|ADB14503.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 409-05] gi|297532426|gb|EFH71312.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 5-1] Length = 539 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 121/351 (34%), Positives = 191/351 (54%), Gaps = 22/351 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++ F TF+ G SNR A T A ++AE + NPL I+ GLGKTHLL AI Sbjct: 193 LNTCATFDTFVPGDSNRFARTVALAVAEGSGRDF-----NPLCIYGGSGLGKTHLLNAIG 247 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQ 272 N ++ + +L+V Y+T+E F F A++ + R +D+LLIDD+QFL Sbjct: 248 NYALVKDSSLKVRYVTSEEFTNEFIEALQTPNQSQGQIADFNRRYREVDVLLIDDIQFLG 307 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H NSL + K++V A+D P L+ + R+ SR + G++V + D E Sbjct: 308 GKEATLEQFFHTFNSLYQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDIKPPDLET 367 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ +++ N+ +VL +A T + REL+GA ++ S + P+ Sbjct: 368 RIAILRMMASMNH-----CNVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSK 422 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A++ L T ++R DI VA++++++ ++L+ +R + V RQ+AMYL+ Sbjct: 423 A-LAEQALQDFFATD--IEVRPTDIISQVAQYFHMTFDELVGRQRTKNVALARQIAMYLA 479 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE-KMLETDITLKKEVELLKRL 499 + MT S +IG FG RDHTTV+HA +V +M E +EL RL Sbjct: 480 REMTSMSLVDIGEVFGGRDHTTVMHAYTRVSGEMQEKQEIYNYVMELTVRL 530 >gi|39938487|ref|NP_950253.1| chromosomal replication initiator protein [Onion yellows phytoplasma OY-M] gi|61212623|sp|Q6YRL3|DNAA_ONYPE RecName: Full=Chromosomal replication initiator protein DnaA gi|39721596|dbj|BAD04086.1| chromosomal replication initiator protein [Onion yellows phytoplasma OY-M] Length = 507 Score = 183 bits (464), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 113/347 (32%), Positives = 195/347 (56%), Gaps = 13/347 (3%) Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F F+ G SN A A+ IAE V NPL+I G+GKTHL+QAI N Sbjct: 167 KYSFDNFVVGKSNNFAFKIAKKIAEE-----KKVTTNPLYIFGKAGIGKTHLIQAIGNHI 221 Query: 221 IKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 +K+ + +V+Y+ A+ F+ F + +R + + R+IDLLL+DD+Q + G Q Sbjct: 222 LKKTHSSKKVLYVKADGFIEEFTNQLRKAKMEDFNEKYRDIDLLLVDDIQIMAGATRTQM 281 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF L + L + KQ+V +D+ SEL+++ R+ SR + G+ V + D+ R +ILK Sbjct: 282 EFFKLFDYLYLNQKQIVITSDKQASELKNIMSRLTSRFEAGLMVDIQSPDFNHRLNILKK 341 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELL 397 ++ + ++P L I ++VL +A + + RE++GA +L+ + +F + IA+E L Sbjct: 342 KILEFEPQNP-LKIKKDVLDLIASSFVNNVREMEGALLRLLNYAQTFGYDIDINIANEAL 400 Query: 398 SHLVNTGETKKMR---IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L+ + ++ +E I+ +V+ +NIS DL+S +R + PR +AMYL K + Sbjct: 401 ELLIKSKKSVSYDEDVLEKIKSVVSNFFNISVRDLMSKKRQQKYTLPRHIAMYLIKELKD 460 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +G F R+H+ V A +K++K ++D LKK +EL+ + I+ Sbjct: 461 IPYNIVG-SFFKRNHSAVFKAYQKIKKNSQSDYELKKSLELILKKIN 506 >gi|282877834|ref|ZP_06286646.1| chromosomal replication initiator protein DnaA [Prevotella buccalis ATCC 35310] gi|281300045|gb|EFA92402.1| chromosomal replication initiator protein DnaA [Prevotella buccalis ATCC 35310] Length = 470 Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 126/472 (26%), Positives = 236/472 (50%), Gaps = 52/472 (11%) Query: 46 LKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQ----- 98 ++ V Y +WFQ + + S + + VP+ F+ +++ Y++ ++K+ + Sbjct: 16 IRENVSKQQYDTWFQPITYESFDEATRTLLIQVPSPFVYEYLEENYIDLLSKVLRRSFCD 75 Query: 99 -----------EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP-INTNISKSPIILG 146 +EH Q VE A +T + P T ++ P L Sbjct: 76 NIRLKYRIVTDQEHHLTQDVE--------------AEQTDVTGVKPQKKTRANQPPSALD 121 Query: 147 K---QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 Q + P L+ F+ +IEG SN++ + SIAE H T + NP+FI+ Sbjct: 122 AAQPQQLDP----NLNPHLTFNNYIEGDSNKLPRSVGMSIAE---HPNKT-QFNPMFIYG 173 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 G GKTHL+ AI S + P RV+Y++A F ++ +A+ N + + + IDLL Sbjct: 174 PSGCGKTHLINAIGMLSKQLYPQKRVLYVSARLFQVQYTNAVLQNSVNDFINFYQTIDLL 233 Query: 264 LIDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 ++DD+Q ++ Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ Sbjct: 234 IVDDIQEWMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNERLLTRFACGLIA 293 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FR 381 L + ++ IL +++ Q++ L I ++V+ ++A+T S R+L G N L+ + Sbjct: 294 ELEKPNLQLCIDILNSKI---QRD--GLQIPDDVVQYIAQTANGSVRDLQGVINSLLAYS 348 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + ++ +A ++ V + K + I++I V +H+N++ + + S R + +V Sbjct: 349 VVYNSVVDMRLAQRVIQRAVKIDD-KPLTIDEILDTVCRHFNVTVSAVNSKSRKQELVTA 407 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 RQ++MYL++ T IG+ G RDH+TV+H+ ++E+ L+ D EV Sbjct: 408 RQLSMYLAQKYTKMPASRIGKLVGGRDHSTVIHSCTRIEQRLKLDSMFSNEV 459 >gi|23335939|ref|ZP_00121170.1| COG0593: ATPase involved in DNA replication initiation [Bifidobacterium longum DJO10A] Length = 506 Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 200/392 (51%), Gaps = 24/392 (6%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 E + P+ P+ + P+ G+Q ++ + L+ F F +F+ G SNR A T Sbjct: 121 ESYGAKPAAAPREPMPATEPQFPV--GQQKMNRDPETHLNKNFTFDSFVPGDSNRFARTV 178 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A ++AE + NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E F Sbjct: 179 ALAVAEGSGQDF-----NPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTN 233 Query: 240 RFASAIRD-----NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 F A+++ R +D+LLIDD+QFL GK +F H N+L + K+ Sbjct: 234 EFIDALQNPNQSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHQANKR 293 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V A+D P L+ + R+ SR + G++V + D E R +IL+ +++ + P Sbjct: 294 IVIASDVAPKNLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIASMNGSKIPS---- 349 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTG---ETKK 408 +VL +A T + REL+GA ++ S + P+ + Sbjct: 350 -DVLDLIAERFTENIRELEGALTRVTAVASLSNQPVXXXXXXXXXXXXXXXXXFFTTDVE 408 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 ++ DI VAK+++++ DL+ R + V PRQ+AMYL++ MT S +IG+ FG RD Sbjct: 409 IKPTDIISQVAKYFHLTFEDLVGKSRTKNVAVPRQIAMYLAREMTSMSLMDIGQVFGGRD 468 Query: 469 HTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 HTTV+HA ++ ++M + +EL RL Sbjct: 469 HTTVMHACTRISDRMQQKQEIYNYVMELTVRL 500 >gi|325270017|ref|ZP_08136625.1| DNA-directed DNA replication initiator protein DnaA [Prevotella multiformis DSM 16608] gi|324987602|gb|EGC19577.1| DNA-directed DNA replication initiator protein DnaA [Prevotella multiformis DSM 16608] Length = 468 Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 124/459 (27%), Positives = 231/459 (50%), Gaps = 28/459 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K V + +WF+ + S + + VP+ F+ +++ Y++ + K+ Sbjct: 16 IKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEGHYVDLLRKVLTRVFG- 74 Query: 104 IQGVEILVRSVA-----LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 QGV++ R + L + + I+ P + ++SP +L + S L Sbjct: 75 -QGVQLTYRVMVDQEHHLSQDLQQDDAEEISSQRPTSRG-NQSPTVL--DAVPQDIDSQL 130 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D F ++EG SN++ + SIAE H TT + NP+FI+ G GKTHL+ AI Sbjct: 131 DPHKSFGNYVEGDSNKLPRSIGLSIAE---HPNTT-QFNPMFIYGPSGCGKTHLINAIGL 186 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQ 277 + + P RV+Y++A F ++ ++R N + + + ID+L++DD+Q + Q Sbjct: 187 RTKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDIQEWATATKTQ 246 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 F H+ N L + ++++ A+DRPP +L+ ++ R+ +R G+ L + ++ IL Sbjct: 247 DTFFHIFNHLFRNGRRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKPNVQLCIDILH 306 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELL 397 +++ K D LNI E+V+ +A T S R+L G N L+ +++ + + + L Sbjct: 307 SKI----KRD-GLNIPEDVVRFIAETANGSVRDLQGVINSLL---AYSVVYNSNVDMRLA 358 Query: 398 SHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++ + + + I+DI V HYN++ + S R + +V RQV+MY+++ T Sbjct: 359 ERVIKRAVKIDDEPLTIDDILDKVCSHYNVTATAVNSRSRKKDIVMARQVSMYMAQKYTK 418 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 IG+ G+RDH+TV+H+ K+E L+ D E+ Sbjct: 419 MPASRIGKLVGNRDHSTVIHSCSKIEDRLKMDKGFFAEI 457 >gi|329768086|ref|ZP_08259595.1| chromosomal replication initiator protein DnaA [Gemella haemolysans M341] gi|328838241|gb|EGF87853.1| chromosomal replication initiator protein DnaA [Gemella haemolysans M341] Length = 494 Score = 182 bits (463), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 134/490 (27%), Positives = 236/490 (48%), Gaps = 61/490 (12%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLE 91 N ++ I+ LK+ V P V+ +WF +V + + ++ + +I++ Y + Sbjct: 3 NSNFLWEIILRELKSTVDPHVFDTWFSSASIDNVDFMKKSIVITSKEALISQFIQSAYDQ 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG----- 146 + ++ ++ +E LP + +P + P N+ + + G Sbjct: 63 KLKEILKKNTGFDFNIEYTSLDNGLPLI-----TPHVEDEKPAAENLIRQNFLQGDKPSG 117 Query: 147 ------KQT---------------ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 KQT I+ L+ + F F+ G N A ++A Sbjct: 118 AQHFYQKQTFPLEDYKKPEPNKNIIASKKNPTLNKNYTFENFVVGEGNAFTHNIAWNVAV 177 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 Y NPLFI+ VGLGKTHLL AI N P+ ++ +++E F+ F ++I Sbjct: 178 SPGGIY-----NPLFIYGGVGLGKTHLLHAIGNEMEANFPDFKIECISSEKFLNEFLASI 232 Query: 246 R--------DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVA 296 + N + + R++D LLIDD+QFL GK Q+ F H N L + KQ+V Sbjct: 233 KPMKDKNNYTNADEDFRRKYRDVDALLIDDIQFLSGKTETQNAFFHTFNELQMNQKQIVL 292 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 +DR PS+L L+ R+ +R G++ + D+E R +I+K + E + ++EE Sbjct: 293 ISDRSPSQLNDLEDRLVTRFSQGITADITPPDFETRMAIIKFKC-----EQFDIKLDEET 347 Query: 357 LMHVARTVTTSGRELDGAFNQLVF----RHSFAPILTAEIADELLSHLVNTGETKKMRIE 412 L +++ V+++ REL+G ++ F +H P L+ IA+E+L T K + + Sbjct: 348 LTYISSNVSSNIRELEGVLKRIKFTATSKHE-QPSLS--IAEEILKS-AKTSPRKNISPD 403 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +I + A Y I +D+LS+ R + VV+ R +A+YL + +T SFP IG F ++DHT++ Sbjct: 404 NIINVCADFYKIKVDDILSSSRKKEVVQVRNIAIYLCRELTTLSFPSIGDCF-NKDHTSI 462 Query: 473 LHAVRKVEKM 482 L++ K+ K+ Sbjct: 463 LYSFNKIAKL 472 >gi|197294170|ref|YP_001798711.1| Chromosomal replication initiator protein [Candidatus Phytoplasma australiense] gi|171853497|emb|CAM11336.1| Chromosomal replication initiator protein [Candidatus Phytoplasma australiense] Length = 455 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 193/345 (55%), Gaps = 15/345 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++ ++ F+ G N+ A T AQ I E D + +NP +I G+GKTHL+Q I Sbjct: 114 INPKYSLDNFVVGKGNKFAFTIAQKIIEEDK-----ISVNPFYIFGQTGIGKTHLIQGIG 168 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N I+++ N +V+Y+ A+ F+ F + +R + + R+ID+LL+DD+Q + G Sbjct: 169 NHLIQKK-NKKVLYVKADGFIEEFTNQLRKAKMEDFNEKYRDIDVLLVDDIQIMAGATRT 227 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF L + L + KQ++ +D+ SEL+++ R+ SR +GG+ V + D++ R IL Sbjct: 228 QMEFFKLFDYLYLNQKQIIITSDKQASELKNIMNRLTSRFEGGLMVDVQNPDFDHRIHIL 287 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADE 395 K ++ Q +P L + +EV+ + + RE++GA +L+ + +F + ++A E Sbjct: 288 KKKILEFQNNNP-LKVQKEVVEMICSVFVNNIREMEGALLRLLNYAKTFGQEINLKVAGE 346 Query: 396 LLSHLVNTGETK----KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 L L+ G+ K + +E I+ +V+ +NI+ DL+ ++ PR +AMYL K Sbjct: 347 ALEPLI-KGKKKLSYDENILEKIKLIVSDFFNINVRDLIGKKKHHKYTLPRNIAMYLIKD 405 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 + S+ IG F R+H+TV A +K++K +TD LKK +EL+ Sbjct: 406 LKGLSYNIIG-SFFKRNHSTVYKAYQKIKKNCQTDHELKKSIELI 449 >gi|258646404|ref|ZP_05733873.1| ATPase [Dialister invisus DSM 15470] gi|260403806|gb|EEW97353.1| ATPase [Dialister invisus DSM 15470] Length = 541 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 113/357 (31%), Positives = 190/357 (53%), Gaps = 27/357 (7%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYT-------------TVRLNPLFIHASVGLG 208 + F F+ G+ N +A +A +IA + YT NPLFI+ GLG Sbjct: 190 YTFDNFVHGNCNEIAFQSAHAIA-LSCEEYTDSPDTNYSKKKPEASNYNPLFIYGPSGLG 248 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI+N +P+L V+++T+E F +IR ++ R +D LLIDD+ Sbjct: 249 KTHLLLAISNYVKTHRPDLSVLFVTSENFTNELIESIRSGKMQEFREKYRTVDYLLIDDI 308 Query: 269 QFLQG--KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 QF G + + E + N++ D+ ++ +DR PS+L+ R+ +R G+ + Sbjct: 309 QFFNGTKESSRMEIFNTFNAIADNDNYIITTSDRTPSDLKDFHERLITRFSSGMIAHISP 368 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D+E+ IL+ + S ++++EEV+ +A V +S REL+GAF Q+V Sbjct: 369 PDFEICSIILQKKAERSH-----IDMSEEVISFIAGNVNSSVRELEGAFKQVVGYCQIKN 423 Query: 387 I-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + LT E A + L+ ++ + E I V K+YN+ + +L R + VV PRQ+A Sbjct: 424 VPLTLENARDALADIIKVDLYSHLSAETIIDTVCKYYNVKKEQVLGKSRPKNVVIPRQMA 483 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE----LLKR 498 MY+++ SFP + + F ++DH+T++HA +V+K L+ + +KE++ LLKR Sbjct: 484 MYIAREELNDSFPSLEKYF-NKDHSTIVHAYERVQKELKNNDRTRKELKDILTLLKR 539 >gi|260885410|ref|ZP_05734994.2| bacterial DnaA protein helix-turn-helix protein [Prevotella tannerae ATCC 51259] gi|260852301|gb|EEX72170.1| bacterial DnaA protein helix-turn-helix protein [Prevotella tannerae ATCC 51259] Length = 460 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 123/479 (25%), Positives = 224/479 (46%), Gaps = 41/479 (8%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 KR V ++ + + L+ + + +WF LKF S+ + + + P F+ +I+ Sbjct: 16 KRLKFVMSQNKWDLCIKTLQAHLSEQAFRTWFAYLKFVSLDADKLVIGAPNKFVIDYIEG 75 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALP---SVEKTASSPSITKLSPINTNISKSPII 144 YL + + ++ + P VEK +P +L P Sbjct: 76 NYLALLQTSIKAHFGNVKVAYSFPKEGEAPRREKVEKVEDAPRRERLDP----------- 124 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 L+ + F F+EG +N++A +IA+ NP F++ Sbjct: 125 ------------QLNRDYTFKAFVEGRANKLARVIGLAIAKEPGKP----AFNPFFLYGP 168 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G+GKTHL+ AI ++ QP RV+Y+ A F ++ ++ N + + ID+L+ Sbjct: 169 SGVGKTHLVNAIGLRILESQPERRVLYVPAHLFKTQYTDSVLHNTINDFIHFYQTIDVLI 228 Query: 265 IDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 IDD+Q + Q F H+ N L + +Q++ DR P + E ++ R+ +R + G + Sbjct: 229 IDDIQEITTAKTQQAFFHIFNHLQQNGRQIIITCDRAPVDFEGIEERMLTRFKWGTVTEM 288 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D +R +IL ++ K D L +V+ ++A V +S REL G N ++ ++ Sbjct: 289 EKPDVALRRAILTAKI----KRD-GLKFPPDVIDYIANNVESSVRELQGIVNSIM---AY 340 Query: 385 APILTAEIADELLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + + +I +L+ +V E ++ ++DI + V K YN+ D+ S R + +V Sbjct: 341 SVVDNCDICQDLVEKVVARAVNLEKHELTLDDIVKAVCKRYNVKLKDVNSKSRKQGIVLA 400 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AM+LS T + +IG G +DH+TVLHA + + TD ++EVE L+ ++ Sbjct: 401 RQLAMFLSHKYTTLPYSQIGHLIGRKDHSTVLHACNTISNRITTDKNFRREVEELESVL 459 >gi|257789780|ref|YP_003180386.1| chromosomal replication initiator protein DnaA [Eggerthella lenta DSM 2243] gi|317489243|ref|ZP_07947760.1| chromosomal replication initiator protein DnaA [Eggerthella sp. 1_3_56FAA] gi|325832244|ref|ZP_08165243.1| chromosomal replication initiator protein DnaA [Eggerthella sp. HGA1] gi|257473677|gb|ACV53997.1| chromosomal replication initiator protein DnaA [Eggerthella lenta DSM 2243] gi|316911644|gb|EFV33236.1| chromosomal replication initiator protein DnaA [Eggerthella sp. 1_3_56FAA] gi|325486080|gb|EGC88534.1| chromosomal replication initiator protein DnaA [Eggerthella sp. HGA1] Length = 520 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 116/353 (32%), Positives = 199/353 (56%), Gaps = 16/353 (4%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 S F F+ G SNR+A + A ++AE+ + LNPLFI+ GLGKTHL++AI N Sbjct: 173 STLTFENFVIGDSNRMAYSMAVAVAEMPGKAH----LNPLFIYGKSGLGKTHLMRAIQNY 228 Query: 220 SIKRQPNLRVVYLTAEYFMWRF--ASAIRD---NCALNLKDSLRNIDLLLIDDMQFLQGK 274 + P L +Y+ + + + ASA D + N K D+LLIDD+Q+LQGK Sbjct: 229 INETMPQLSTIYVDSAELLSDYMEASAAHDKQKSSYKNFKTRYEEADVLLIDDVQYLQGK 288 Query: 275 LIQHEFC-HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 + + N L +QVV +ADR P ++ +D R RSR G + + + E + Sbjct: 289 KQTLDIVFQIFNKLTSQGRQVVLSADRAPKNID-IDERYRSRFNSGGTFDIQPPEIETKL 347 Query: 334 SILKNRLAISQKEDPK--LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILT 389 I+K+ + ++ + NI +++ M++A + +++ REL A +++++ +F P L Sbjct: 348 GIVKSFVDEYRESEGSHDFNIPDDIQMYIAESSSSNIRELKSAVTKVIYQMTFFNQPDLK 407 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + LL + G +K++ I DIQ+ V Y +S DL+ +R R ++ RQ+A+YL Sbjct: 408 LDDVRTLLENHFTGGPSKRLTIADIQKEVENFYKVSHADLVGKKRTRNIIYARQIAIYLC 467 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + M F +IG++F +RDH+TV+++V VE+ ++ + L++E+E L+ LI+E Sbjct: 468 RQMLDLPFNDIGKKF-NRDHSTVMYSVTNVEEKMKENRELREELEALRGLINE 519 >gi|308235533|ref|ZP_07666270.1| chromosomal replication initiation protein [Gardnerella vaginalis ATCC 14018] gi|311114014|ref|YP_003985235.1| DNA-directed DNA replication initiator protein [Gardnerella vaginalis ATCC 14019] gi|310945508|gb|ADP38212.1| DNA-directed DNA replication initiator protein [Gardnerella vaginalis ATCC 14019] Length = 535 Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 118/351 (33%), Positives = 189/351 (53%), Gaps = 22/351 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++ F TF+ G SNR A T A ++AE + NPL I+ GLGKTHLL AI Sbjct: 191 LNTYATFDTFVPGDSNRFARTVALAVAEGSGRDF-----NPLCIYGGSGLGKTHLLNAIG 245 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-----LNLKDSLRNIDLLLIDDMQFLQ 272 N ++ + +L+V Y+T+E F F A+++ N R +D+LLIDD+QFL Sbjct: 246 NYALVKDSSLKVRYITSEEFTNEFIEALQNTSQNQGQIANFNRRYREVDVLLIDDIQFLG 305 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D P L + R+ SR + G++V + D E Sbjct: 306 GKEATLEQFFHTFNALYQANKRIVIASDVAPKNLRGFESRLISRFESGLTVDIKPPDLET 365 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ +++ N+ +VL +A T + REL+GA ++ S + P+ Sbjct: 366 RIAILRMMASMNGS-----NVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSK 420 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +A++ L ++R DI VA++++++ ++++ R + V RQ+AMYL+ Sbjct: 421 A-LAEQALQDFF--ASDIEVRPTDIIGQVAQYFHMTFDEMVGRSRTKNVALARQIAMYLA 477 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE-KMLETDITLKKEVELLKRL 499 + MT S +IG FG RDHTTV+HA ++ +M E +EL RL Sbjct: 478 REMTSMSLVDIGEVFGGRDHTTVMHAYTRISGEMQEKQEIYNYVMELTVRL 528 >gi|159026644|emb|CAO86578.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 444 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 121/345 (35%), Positives = 191/345 (55%), Gaps = 18/345 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ FS F+ G +NR+A AA ++AE+ + NPLF+ VGLGKTHL+QAI Sbjct: 106 LNPKYNFSRFVVGPTNRMAHAAALAVAELPGREF-----NPLFLCGGVGLGKTHLMQAIG 160 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++ P RV Y++ E F +AIR + + ++ R+ D+LL+DD+QF++GK Sbjct: 161 HYRLELYPQSRVFYVSTEQFTNDLITAIRQDSMESFRNHYRHADILLVDDLQFIEGKEYT 220 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQVV A+DR P ++ SL R+ SR G+ + D E R +IL Sbjct: 221 QEEFFHTFNTLHEAGKQVVLASDRLPKQIPSLQDRLISRFSMGLVADIQAPDIETRMAIL 280 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + E L + EV+ ++A T++ REL+GA L+ ++ I + E Sbjct: 281 QKK-----AEYENLRLPREVIEYIALNYTSNIRELEGA---LIRATTYISISGLPMTVEN 332 Query: 397 LSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ ++N K E I +VA+ + +S DL N R R + RQ+ MYL + T Sbjct: 333 IAPVLNPPMAKIATSPEIIMAVVAEKFQLSIADLKGNSRRREISFARQIGMYLMRQHTDL 392 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P IG FG +DHTTV+++ K+ D L+ E+L +LI Sbjct: 393 SLPRIGEEFGGKDHTTVIYSCDKINLSQHQDRQLQ---EILAQLI 434 >gi|223038517|ref|ZP_03608811.1| chromosomal replication initiator protein DnaA [Campylobacter rectus RM3267] gi|222880374|gb|EEF15461.1| chromosomal replication initiator protein DnaA [Campylobacter rectus RM3267] Length = 436 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 126/463 (27%), Positives = 233/463 (50%), Gaps = 48/463 (10%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVH--LSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 L ++ P + + ++LKF+ N + + P + +I+ +Y I LF+ Sbjct: 10 LSKEILPSEFECYIKQLKFNEKNSNSTNVVFNAPNEIIAKFIQTKYASKIAHLFE----- 64 Query: 104 IQGVEILVRSVALPSVEKTASSPSITK-LSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 V++ P + A+S + +K ++ K+ S L+ + Sbjct: 65 -------VKTGQKPVINVQAASKTQSKPAKKVDVKEIKAQ------------SSLLNPSY 105 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ G SN+ A +A++++E Y NPLFI+ GLGKTHLLQ++ N + Sbjct: 106 TFENFVVGDSNQFAFLSAKAVSEQLGKIY-----NPLFIYGPTGLGKTHLLQSVGNFCL- 159 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEF 280 V+ +T+E F+ F + ++ ++ RN D+LLIDD+QFL GK IQ EF Sbjct: 160 -NGGKMVICVTSEQFITDFTYNLNNHSMERFREKYRNCDVLLIDDVQFL-GKTDKIQEEF 217 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L Q+V +DR P L+ + R+R+R + G+ + + + + +I+K + Sbjct: 218 FHTFNELHAKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIIADITPPELDTKIAIIKKKC 277 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 E K+ + EV+ ++A + + RE++ A L +++A ++ EI E ++ Sbjct: 278 -----EFDKIYLGIEVINYIATNMGDNIREIESAIINL---NAYARLMRQEITLEFAKNI 329 Query: 401 VNTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + +K + +E I +V+K N+ +++ S R + +V R++ +YL+K +TP S Sbjct: 330 LRDQIKEKRENINLESIVEIVSKELNVKPSEMKSKSRSKNIVEARRIVIYLAKNLTPNSM 389 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+I + F +DH+ V H+++K+ +++ET+ K VE LK I Sbjct: 390 PQIAQFFNMKDHSAVSHSIKKINELIETNEYFKIRVEELKNKI 432 >gi|257461143|ref|ZP_05626241.1| chromosomal replication initiator protein DnaA [Campylobacter gracilis RM3268] gi|257441517|gb|EEV16662.1| chromosomal replication initiator protein DnaA [Campylobacter gracilis RM3268] Length = 442 Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 138/466 (29%), Positives = 237/466 (50%), Gaps = 47/466 (10%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH-S 102 S L+ ++ P Y+ + + LKF+ S P F I N E I K Q ++ + Sbjct: 11 SNLEKEILPTEYSRYIKNLKFND------KNSTPEFF----IYNATNEFIAKYTQTKYGT 60 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTN--ISKSPIILGKQTISPVFGSPLDS 160 +I+ E++ + L V +S + K+SP IS+ P K TI L Sbjct: 61 KIK--ELIKKQFGLNDVIVKITSKA--KISPKEKVKIISEKP----KSTI-------LSE 105 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 + F FI G SN+ A + S+A+ +R NPLFI+ GLGKTHLLQ+I N Sbjct: 106 NYNFENFIIGDSNKFAFECSVSVAKEPG-----IRFNPLFIYGPSGLGKTHLLQSIGNYC 160 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 IK+ V+ +T+E F F +++N K RN D+LLIDD+QFL G+ Q E Sbjct: 161 IKKGKT--VICVTSEQFANDFVFNLKNNSIDKFKQKYRNCDVLLIDDIQFLIGRDKAQEE 218 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 + N L D Q+V D PP L+ + R+ +R + G+ + + E + +I+ + Sbjct: 219 LFYTFNELKDKNCQIVLTNDLPPKFLKGFENRLTTRFESGIIANITPPNLETKIAIINKK 278 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 E+ ++ I +V+ ++A + + RE++GA N+L ++++ IL +I E Sbjct: 279 -----SEENRVRIPHDVVEYIAANMGDNIREIEGAINKL---NAYSSILRTKITLEFTKS 330 Query: 400 LVNTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 + +K + +E + +++K N+ ++L S R + VV RQ+ +YL+K +T S Sbjct: 331 TLQDQIHQKYSSVSLEHVIEVISKELNVKPSELKSKTRAKNVVEARQICIYLTKQLTQNS 390 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P+I F +DH+ + ++K+ ++++TD LK ++E LK I++ Sbjct: 391 MPKIAAFFNLKDHSAISKNIKKINELIQTDEMLKIKIEELKNKITK 436 >gi|254384774|ref|ZP_05000111.1| chromosomal replication initiator protein dnaA [Streptomyces sp. Mg1] gi|194343656|gb|EDX24622.1| chromosomal replication initiator protein dnaA [Streptomyces sp. Mg1] Length = 590 Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 116/319 (36%), Positives = 183/319 (57%), Gaps = 20/319 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 284 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 338 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + R +D+LL+DD+QFL K Sbjct: 339 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYREMDILLVDDIQFLASKEST 398 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 399 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 458 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 459 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 510 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +++L +L+ GE I DI A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 511 TEDVLKNLIPGGEDSAPEITASDIMAATADYFGLTVDDLCGSSRSRVLVTARQIAMYLCR 570 Query: 451 IMTPRSFPEIGRRFGDRDH 469 +T S P+IG +FG RDH Sbjct: 571 ELTDLSLPKIGAQFGGRDH 589 >gi|212550358|ref|YP_002308675.1| chromosomal replication initiation protein DnaA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548596|dbj|BAG83264.1| chromosomal replication initiation protein DnaA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 455 Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 128/445 (28%), Positives = 226/445 (50%), Gaps = 28/445 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK-LFQEEHSRI 104 +++ + + + +WF + N + P F +++ +Y + I + LFQ +I Sbjct: 15 IEDNITENTFHTWFSPIVPLKYEDNNFTIQTPNQFFYEYLEEKYAKLILQSLFQVTGKQI 74 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 IL + + + T +T+ ++S K T+ + S L++R F Sbjct: 75 ----ILTYQIIINNDFDRNKKKYTTSQRDCSTSFNESQ----KTTLIKDWNSNLNNRQTF 126 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F E +N+VA AQ +A+ + NP FI+ G+GKTHL AI N + Sbjct: 127 RNFFESDNNKVAYVIAQKVAQEPGKDF-----NPYFIYGGPGVGKTHLCHAIGNKVTEFH 181 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--LIQHEFCH 282 RV+Y+ A F ++ +IR + + ID+L++DD+ L GK +Q F H Sbjct: 182 FQKRVIYIPAHLFQIQYTDSIRKHEPNEFIHFYQGIDILILDDIHELSGKEKTLQAYF-H 240 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 + N L +Q++ AD+ P+E+ L+ R+ SRL+ G+++ L D E+R IL R I Sbjct: 241 IFNHLHQLGRQIILTADKIPAEIIGLEERLTSRLKWGLTIELQKPDLELRKKILNYR--I 298 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVN 402 Q+ +L++ EEV+ ++A V + R+L+G L+ +++ + EI E +V Sbjct: 299 RQR---RLSVPEEVIDYIAENVPENARDLEGIVTSLI---AYSLVDNCEINLESAQKIVG 352 Query: 403 T---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 + K++ +E IQ +V+ ++ ++ + + S R R +V+ RQ+AM+LSK T S+ Sbjct: 353 KIVRKKKKQITLEKIQNIVSSYFKVNIDQIHSKSRKREIVQARQIAMFLSKKHTDHSYSL 412 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLE 484 IG + G RD TTVLHA + V+ L+ Sbjct: 413 IGEQIGKRDRTTVLHACKSVQNNLD 437 >gi|239616412|ref|YP_002939734.1| chromosomal replication initiator protein DnaA [Kosmotoga olearia TBF 19.5.1] gi|259645253|sp|C5CH91|DNAA_KOSOT RecName: Full=Chromosomal replication initiator protein DnaA gi|239505243|gb|ACR78730.1| chromosomal replication initiator protein DnaA [Kosmotoga olearia TBF 19.5.1] Length = 447 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 130/442 (29%), Positives = 221/442 (50%), Gaps = 34/442 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S LK ++ + +WF + V + + SV F+K W++++Y I+K +E + + Sbjct: 7 SILKKRLARKTWDNWFTTFQVKKVTDDKIIFSVGNLFIKDWLQSKYGSVISKAIKEAYGK 66 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 EI+ + + K+ S K P++ K P+ S L++ + Sbjct: 67 NLDYEIVYETTEPEAFNKSNES-------------YKGPLVKKK----PLLISNLNANYT 109 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G NRV + I+ R NP F++ VGLGKTHLLQAIA+ ++ Sbjct: 110 FENFVVGPENRVLYEVSLEISR------NPGRYNPFFVYGMVGLGKTHLLQAIAHKIMEL 163 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK-LIQHEFC 281 P +RV+Y+T+E FM +I+ + ++ R D+LLIDD+QFL GK +Q E Sbjct: 164 HPEMRVLYITSEQFMNDMIDSIKYGSVRDFREHYRKKADVLLIDDIQFLIGKNGVQKELF 223 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L D+ KQ+V +DR P EL R+ SR Q G+ + + + + RF I K + A Sbjct: 224 HTFNELYDAGKQIVICSDRNPEELNGFHDRLVSRFQMGMVMEICPPEKDTRFKIAK-KFA 282 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 E +++ ++V +A +V + R L G +L+ + S + A + +++L+ Sbjct: 283 ----ERESVSLPDDVAQLLADSVDGNLRILRGVIIKLIVQSSINKERIGAALTNQILAAF 338 Query: 401 VNTG-ETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 T K+M+ ED I + +S ++ R + +V RQ+ MY+ K +S Sbjct: 339 NKTTVSIKRMKEEDLIMSTIEAVMGVSPEEIKGTSRKQNIVLSRQLLMYILKRHHGKSIK 398 Query: 459 EIGRRFGDRDHTTVLHAVRKVE 480 EI + G R H+TV+H+++K+E Sbjct: 399 EISKITGKR-HSTVIHSIKKIE 419 >gi|197120422|ref|YP_002132373.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. K] gi|196170271|gb|ACG71244.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. K] Length = 458 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 138/471 (29%), Positives = 243/471 (51%), Gaps = 32/471 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + +++ + L+ + D+Y WF+ L+ S+ + + P F + ++++ Y Sbjct: 9 VETPLDDLWSRIDGFLRARCREDLYERWFEPLRPVSLDEGRLQIGAPDKFHRDFVEDNY- 67 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 F+E + G E L + A+ + + + + ++ + P + Sbjct: 68 ---RGWFEEFIPELTG-ERLRIAFAVDDAPRPIGAAAAPAPAAVSAARAPEP------HL 117 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P P + R+ F TF+ G+SN A AAQ++A + G T NPLF+H GLGKT Sbjct: 118 DPRDSRP-NPRYAFDTFVVGASNHFAFAAAQAVAA--NPGRT---WNPLFLHGDSGLGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+A+A +++ RV +++E + F +A+ + R LL+DD+QF Sbjct: 172 HLLHAVAHAILEKSGG-RVAIVSSERYTNDFVAALSKGTMDEFRRKYRECSALLVDDVQF 230 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK EF H N L D Q+V ++DR P EL+ LD R+ SR + G+ V + + ++ Sbjct: 231 LAGKDKTAEEFFHTFNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEVPEF 290 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL+ + + K+++ ++V +A+ + ++ REL+GA +L +FA + Sbjct: 291 ETRAAILQKKADVE-----KIDLPDDVTQLLAQHIRSNVRELEGALMRLA---AFASLKS 342 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +A ++L+ ++ + IE IQ VA HY ++ L S R + + PRQVA Sbjct: 343 EPITVPLARDVLADVIPPPGYRPP-IEKIQEAVAGHYGLTVAKLTSASREQKIAFPRQVA 401 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 MYL + + F I +F +DHTTV+ AV +V+ +LE+D ++ V L Sbjct: 402 MYLCRELAKEKFQSIAEKFNKKDHTTVIAAVDRVKGLLESDDAVRTAVAQL 452 >gi|332654819|ref|ZP_08420561.1| ATPase involved in DNA replication initiation [Ruminococcaceae bacterium D16] gi|332516162|gb|EGJ45770.1| ATPase involved in DNA replication initiation [Ruminococcaceae bacterium D16] Length = 427 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 114/350 (32%), Positives = 187/350 (53%), Gaps = 21/350 (6%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P + F F+ GSSN+ A AA+++A+ Y NPLFI+ GLGKTHLL AI Sbjct: 87 PGTEEYTFERFVVGSSNKFAHAAARAVADNPGQSY-----NPLFIYGESGLGKTHLLYAI 141 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 A+ K P +VVY+ + F AIR+ ++ R D+ L+DD+QF+ G+ Sbjct: 142 AHTIHKNHPEYKVVYIKGDTFTNELIQAIREGRNAEFREKYRGADVFLMDDVQFIAGRDS 201 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q E H N+L + KQ+V +DRPP E+ L+ R+++R + G+ + DYE R +I Sbjct: 202 TQEEMFHTFNTLYELKKQIVFTSDRPPKEMLRLEDRLKTRFEWGLLADIQPPDYETRMAI 261 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 +KN+ E P+ +L +A +T + R+++G N+++ ++ ++ + + Sbjct: 262 IKNKAVRMGVELPEF-----LLQLIAENITANVRQIEGTVNKIM---AYQQLMGDSVDKD 313 Query: 396 LLSHLVNTGETKKMRI----EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + V +K I + I V K YNI L R + + RQ+AMY + Sbjct: 314 TVVRAVKDMFKEKSDIVPTADVIIDEVCKFYNIEPATLRGQGRAKDISLARQIAMYQIRR 373 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S EIG+ F +RDHTTVLH++ ++E +++TD ++ E++K + S Sbjct: 374 MTNLSLKEIGKEFDNRDHTTVLHSIERIEDLVKTD---PEKAEIIKDITS 420 >gi|301165372|emb|CBW24943.1| Chromosomal replication initiator protein dnaA [Bacteriovorax marinus SJ] Length = 437 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 192/346 (55%), Gaps = 20/346 (5%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLGKTHL 212 G +D F FI G SN +A A +I+ D Y + L+IH++ GLGKTHL Sbjct: 98 GMNIDPTKTFDNFIVGPSNNLAHATAVAISRTPGDQGKYPS-----LYIHSNSGLGKTHL 152 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-RNIDLLLIDDMQFL 271 L A+AN + P V TA FM + +++ ++ + ID+L+IDD+ L Sbjct: 153 LYAVANGIKENFPQYVVYLTTARDFMKEYIESVKSKTVDAFQEKFTKKIDVLMIDDIHEL 212 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 +GK Q E H+ N L + KQ++ +D+ P E++ ++ RI++RLQ G+ + + D+E Sbjct: 213 KGKKGTQDELFHVFNGLYTNGKQLIFTSDKSPEEIDGIEERIKTRLQWGLVIDIQKPDFE 272 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 R +ILK + + L + +++L +A ++ T+ REL+G+ +L ++A ++ Sbjct: 273 TRIAILKRKAY-----ELDLYLQDDILTLIANSIKTNIRELEGSLVKLC---AYADVMNV 324 Query: 391 EIADELLSHLVNTGET---KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 E+ E++ ++ + +K+ ++ + + ++H+ I DL S R + +V R VAMY Sbjct: 325 EVDTEMVKDILGLSSSDVERKITLDIVAKATSQHFKIPVPDLKSKARTKDIVNARFVAMY 384 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 LS+ + + EIGR +G RDH++V+HA R +++ + DI L +++ Sbjct: 385 LSRKIVNATQEEIGRFYGGRDHSSVVHAERTIKEKMNNDIALSRDI 430 >gi|327312316|ref|YP_004327753.1| chromosomal replication initiator protein DnaA [Prevotella denticola F0289] gi|326945680|gb|AEA21565.1| chromosomal replication initiator protein DnaA [Prevotella denticola F0289] Length = 468 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 125/454 (27%), Positives = 231/454 (50%), Gaps = 32/454 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K V + +WF+ + S + + VP+ F+ +++ Y++ + K+ +R Sbjct: 16 IKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEEHYVDLLRKVL----TR 71 Query: 104 I--QGVEILVRSVA-----LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + QGV++ R + L + + I+ P T ++SP +L + S Sbjct: 72 VFGQGVQLTYRVMVDQEHHLSQDLQQDDAEEISSQRP-TTRGNQSPTVL--DAVPQDIDS 128 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LD F+ ++EG SN++ + SIAE H TT + NP+FI+ G GKTHL+ A+ Sbjct: 129 QLDPHKSFNNYVEGDSNKLPRSIGLSIAE---HPNTT-QFNPMFIYGPSGCGKTHLVNAV 184 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKL 275 + P RV+Y++A F ++ ++R N + + + ID+L++DD+Q + Sbjct: 185 GLRVKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDIQEWATATK 244 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L + ++ I Sbjct: 245 TQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKPNVQLCIDI 304 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L N++ K D L I E+V+ ++ T S R+L G N L+ +++ + + I Sbjct: 305 LHNKI----KRD-GLCIPEDVVRFISETANGSVRDLQGVINSLL---AYSVVYNSNIDMR 356 Query: 396 LLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L ++ + + + I+DI V HYN++ + S R + +V RQV+MY+++ Sbjct: 357 LAERVIKRAVKIDDEPLTIDDILDKVCSHYNVTTTAVNSRSRKKDIVMARQVSMYMAQKY 416 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 T IG+ G+RDH+TV+H+ K+E L+ D Sbjct: 417 TKMPASRIGKLVGNRDHSTVIHSCSKIEDRLKID 450 >gi|224418815|ref|ZP_03656821.1| chromosomal replication initiation protein [Helicobacter canadensis MIT 98-5491] gi|253826661|ref|ZP_04869546.1| Chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] gi|313142334|ref|ZP_07804527.1| chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] gi|253510067|gb|EES88726.1| Chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] gi|313131365|gb|EFR48982.1| chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] Length = 430 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 121/465 (26%), Positives = 229/465 (49%), Gaps = 51/465 (10%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +LK ++ P + ++ +L F+ + + + P N + +WIK +Y I +LF+ ++ Sbjct: 7 QLKREITPFEFDNYITQLSFNEKYSRDDRIIFNAPNNIIASWIKTKYSSKIAQLFENQNG 66 Query: 103 RIQGV--EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + E+ + + + T L+P Sbjct: 67 YKPEIIIEVFNPNKKKENKNNIKKIQNATNLNP--------------------------- 99 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN-- 218 F++FI G+SN A A+++A+ S Y NPL I+ + GLGKTHLL AI N Sbjct: 100 SLTFNSFIVGNSNSFAFNVAKAVAQNQSTIY-----NPLVIYGNTGLGKTHLLNAIGNTN 154 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 A++ + V+Y T+E F+ + IR+N ++ R D LLIDD+QFL GK IQ Sbjct: 155 ANVGKS----VIYTTSEQFLNDYLLHIRNNTMDRFREKYRACDYLLIDDIQFLSGKNQIQ 210 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N L + KQ+V +DRPP ++ L+ R+++R G+ + + E + +I+ Sbjct: 211 EEFFHTFNELKKNNKQIVLTSDRPPKDMNGLEERLKTRFTSGLLADIQPPELETKINIIN 270 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAEIADE 395 + + ++++ +++ +A + + RE++G +L F + I +T + + Sbjct: 271 AKCELD-----GIHLSPKIIDFIAANINDNIREIEGVLVKLNFSINVTNIQEITIDFVRD 325 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L + + + + ++ I VAK+YNI +++ S R + +V R++ +YL++ +TP Sbjct: 326 ILKEYIKESK-ENINMDRIIENVAKYYNIKPSEIRSKSRSKNIVTARKIVIYLARTLTPN 384 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S + F +DH+TV A++ +++ + + K +E LK I Sbjct: 385 SMLSLADYFDMKDHSTVSKAMKSIQEEINKNPNFKTIIEELKNKI 429 >gi|260593160|ref|ZP_05858618.1| DNA replication initiator protein, ATPase [Prevotella veroralis F0319] gi|260534868|gb|EEX17485.1| DNA replication initiator protein, ATPase [Prevotella veroralis F0319] Length = 468 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 128/478 (26%), Positives = 239/478 (50%), Gaps = 36/478 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNR 88 + VN + ++ +K V Y +WF+ + S + + VP+ F+ +++ Sbjct: 1 MNVNPKQLWDQCLQLIKENVTEQQYDTWFRPIVLQSYQPASKTLLVQVPSQFVYEYLEEH 60 Query: 89 YL----ETITKLFQEEHSRIQGVEILVRSVA-----LPSVEKTASSPSITKLSPINTNIS 139 Y+ +T+ ++F QGV++ R + L + + I+ P + Sbjct: 61 YVPLLRKTLIRVFG------QGVQLSYRVMVDQEHHLSQDLQPDTVEEISSQRPTARG-N 113 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +SP IL + S LD F+ +IEG SN++ + SIAE S T + NP+ Sbjct: 114 QSPTIL--DAVPQDLDSQLDPHKSFTNYIEGDSNKLPRSIGLSIAEHPS----TTQFNPM 167 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI+ G GKTHL+ AI + P RV+Y++A F ++ ++R N + + + Sbjct: 168 FIYGPSGCGKTHLVNAIGLKVKQLYPEKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQT 227 Query: 260 IDLLLIDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L++DD+Q ++ Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R Sbjct: 228 IDVLIVDDIQEWITATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSC 287 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ L + ++ IL N++ K D L+I E+V+ +A T S R+L G N L Sbjct: 288 GLIAELEKPNVQLCVDILHNKI----KRD-GLSIPEDVIKFIAETANGSVRDLQGVINSL 342 Query: 379 VFRHSFAPILTAEIADELLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 + +++ + + + L ++ + + + I+DI V H++++ + + S R Sbjct: 343 L---AYSVVYNSNVDMRLAERVIKRAVKIDDEPLTIDDILDKVCTHFSVTTSAVNSRSRK 399 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + +V RQV+MY+++ T IG+ G+RDH+TV+H+ K+E L+ D E+ Sbjct: 400 KDIVMARQVSMYMAQKYTKMPASRIGKLVGNRDHSTVIHSCSKIEDRLKVDKGFYAEL 457 >gi|295837757|ref|ZP_06824690.1| DNA-directed DNA replication initiator protein [Streptomyces sp. SPB74] gi|295826662|gb|EFG64970.1| DNA-directed DNA replication initiator protein [Streptomyces sp. SPB74] Length = 632 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 118/324 (36%), Positives = 184/324 (56%), Gaps = 20/324 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLF++ GLGKTHLL AI Sbjct: 300 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFVYGESGLGKTHLLHAIG 354 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 355 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKEST 414 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 415 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 474 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 + + Q LN EVL +A ++ + REL+GA L+ +FA + + + Sbjct: 475 RKKAVQEQ-----LNAPPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGL 526 Query: 393 ADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE I I A ++ + DL + R R +V RQ+AMYL + Sbjct: 527 TEIVLKDLIPGGEDASPEITASAIMSATADYFGQTVEDLCGSSRSRVLVTARQIAMYLCR 586 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLH 474 +T S P+IG +FG RDHTTV+H Sbjct: 587 ELTDLSLPKIGAQFGGRDHTTVMH 610 >gi|167011107|ref|ZP_02276038.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica FSC200] Length = 432 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 107/306 (34%), Positives = 172/306 (56%), Gaps = 19/306 (6%) Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL-NPLFI 201 +I K+ FG PL ++VF +F+ G +N++A AA ++ +L NPLFI Sbjct: 141 LITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS------INPGKLHNPLFI 194 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHL+QAI N + + PN +++Y +E F+ + ++IR + R+ D Sbjct: 195 YGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSAD 254 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G+ Sbjct: 255 ILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGL 314 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + D E R +IL + + D + E +A V T+ REL+GA N+++ Sbjct: 315 TVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLT 369 Query: 381 RHSFA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 F P T E+A L ++ E KK++I++IQ++VA I DL SN+R R Sbjct: 370 TSKFNHKDP--TIEVAQACLRDVIKIQE-KKVKIDNIQKVVADLVGIRVKDLTSNQRSRN 426 Query: 438 VVRPRQ 443 + RPRQ Sbjct: 427 IARPRQ 432 >gi|229816997|ref|ZP_04447279.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM 20098] gi|229785742|gb|EEP21856.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM 20098] Length = 516 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 111/335 (33%), Positives = 183/335 (54%), Gaps = 21/335 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F TF+ G SNR A T A ++AE + NPL I+ GLGKTHLL AI Sbjct: 174 LNKNATFDTFVPGDSNRFARTVALAVAEGSGKDF-----NPLCIYGGSGLGKTHLLNAIG 228 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQ 272 N ++ + P L+V Y+ +E F+ F A++ R++D+LLIDD+QFL Sbjct: 229 NYALVKDPTLKVRYVNSEEFLNEFIEALQIPSQSQGRIAEFNRRYRSVDVLLIDDIQFLG 288 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D P L+ + R+ SR G++V + D E Sbjct: 289 GKEATLEQFFHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLET 348 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ +++ NI +VL +A T + REL+GA ++ S + P+ T Sbjct: 349 RIAILRMMASMNHS-----NIPNDVLDLIAERFTENIRELEGALTRVTAVASLSNQPV-T 402 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A++ L T +++ DI AK+++++ +D++ R++ + RQ+AMYL+ Sbjct: 403 RAMAEQTLQDFFTT--DVEIKPTDIISQAAKYFHLTFDDIVGRSRMKNIALARQIAMYLT 460 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + MT S +IG+ FG +DHTTV+HA ++ ++ Sbjct: 461 REMTSMSLVDIGKVFGGKDHTTVMHACDRITNEMQ 495 >gi|241889156|ref|ZP_04776460.1| chromosomal replication initiator protein DnaA [Gemella haemolysans ATCC 10379] gi|241864405|gb|EER68783.1| chromosomal replication initiator protein DnaA [Gemella haemolysans ATCC 10379] Length = 494 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 133/490 (27%), Positives = 237/490 (48%), Gaps = 61/490 (12%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLE 91 N ++ I+ LK+ V P V+ +WF +V + + ++ + +I+ Y + Sbjct: 3 NSNFLWEIILRELKSTVDPHVFDTWFSGASIDNVDFMKKSIVITSKEALISQFIQGAYDQ 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG----- 146 + ++ ++ ++ +P + +P + P N+ + + G Sbjct: 63 KLKEILKKNTGFDFNIDYTSLDTDIPLI-----TPQVFDEKPAAENLIRQNFLQGDKPSG 117 Query: 147 ------KQT--------------ISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAE 185 KQT I+ +P L+ + F F+ G N A ++A Sbjct: 118 AQHFYQKQTFPLEDYKHPVPNKNITASKKNPTLNKNYTFENFVVGEGNAFTHNIAWNVAV 177 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 Y NPLFI+ VGLGKTHLL AI N P+ ++ +++E F+ F ++I Sbjct: 178 SPGGIY-----NPLFIYGGVGLGKTHLLHAIGNEMEANFPDFKIECISSEKFLNEFLASI 232 Query: 246 R--------DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVA 296 + N + + R++D LLIDD+QFL GK Q+ F H N L + KQ+V Sbjct: 233 KPMKDKNNYTNADEDFRRKYRDVDALLIDDIQFLSGKTETQNAFFHTFNELQMNQKQIVL 292 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 +DR PS+L L+ R+ +R G++ + D+E R +I+K + E + ++EE Sbjct: 293 ISDRSPSQLNDLEDRLVTRFSQGITADITPPDFETRMAIIKFKC-----EQFDIKLDEET 347 Query: 357 LMHVARTVTTSGRELDGAFNQLVF----RHSFAPILTAEIADELLSHLVNTGETKKMRIE 412 L +++ V+++ REL+G ++ F +H P L+ IA+E+L T K + + Sbjct: 348 LTYISSNVSSNIRELEGVLKRIKFTATSKHE-QPSLS--IAEEILKS-AKTSPRKNISPD 403 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +I + A Y I +D+LS+ R + VV+ R +A+YL + +T SFP IG F ++DHT++ Sbjct: 404 NIINVCADFYKIKVDDILSSSRKKEVVQVRNIAIYLCRELTTLSFPSIGDCF-NKDHTSI 462 Query: 473 LHAVRKVEKM 482 L++ K+ K+ Sbjct: 463 LYSFNKIAKL 472 >gi|270284630|ref|ZP_05966430.2| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum DSM 20093] gi|270276567|gb|EFA22421.1| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum DSM 20093] Length = 560 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 122/372 (32%), Positives = 194/372 (52%), Gaps = 23/372 (6%) Query: 117 PSVEKTASSPSITKLS-PINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 P+ + A ++T+ PI T I + I G + L+ F F+ G SN+ Sbjct: 176 PATQPAAHKAAVTQGQLPIPTTIPEQHIQQGTSRPQLDPATHLNKNATFDNFVPGDSNQF 235 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A T A ++AE Y NPL I+ GLGKTHLL AI N ++ + P+L+V Y+T E Sbjct: 236 ARTVALAVAEGSGRDY-----NPLCIYGGSGLGKTHLLNAIGNYALVKDPSLKVRYVTTE 290 Query: 236 YFMWRFASAIRDNCA-----LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 F F +IR + R++D+LLIDD+QFL GK +F H N+L Sbjct: 291 EFTNEFIESIRPEGSDAKPMSEFNHRYRSVDVLLIDDIQFLSGKSQTMEQFFHTFNTLQQ 350 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + K++V A+D P +L + R+ SR + G+ V + + E R +IL+ E K Sbjct: 351 NNKRIVIASDVAPKKLRDFEDRLISRFESGLVVDVKPPELETRIAILR-----MMAETNK 405 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETK 407 +++ +V+ +A T + R+L+GA ++ + + PI T +A+++L E K Sbjct: 406 VDVPRDVMDLIAEHCTENIRQLEGALTRVTAQATLNNQPI-TRILAEQVLKDYNTNVEVK 464 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 DI VAK++ ++ +DL+ R + V RQ+AMYL++ MT S +IG+ FG R Sbjct: 465 PT---DIIGQVAKYFYLTFDDLVGRSRTKNVALARQIAMYLTREMTSMSLVDIGQVFGGR 521 Query: 468 DHTTVLHAVRKV 479 DHTTV+H ++ Sbjct: 522 DHTTVMHNCDRI 533 >gi|254457518|ref|ZP_05070946.1| chromosomal replication initiator protein DnaA [Campylobacterales bacterium GD 1] gi|207086310|gb|EDZ63594.1| chromosomal replication initiator protein DnaA [Campylobacterales bacterium GD 1] Length = 435 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 117/435 (26%), Positives = 222/435 (51%), Gaps = 56/435 (12%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 P + WIK++Y E I LF+ V+S + SV+ T + + ++ Sbjct: 44 PNALVNNWIKSKYSEKIAHLFE------------VKSGSKVSVKITLKNSTDKRIKL--- 88 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 ++T + S L+ F F+ G SN+ A A +S++E Y Sbjct: 89 ----------QKTEQKLQHSLLNPSHTFDNFMVGGSNQFAYAAVKSVSESPGEVY----- 133 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI+ VGLGKTHL+Q+ N + + V+Y + E F+ F +R+ + ++ Sbjct: 134 NPLFIYGGVGLGKTHLMQSAGN--VFQNQGKSVIYTSVEQFLNDFIRHVRNKTMPSFQEK 191 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R D+LLIDD+QFL K IQ EF H +L S KQ++ AD+ P ++ L+ R++SR Sbjct: 192 YRKCDVLLIDDIQFLSNKEGIQEEFFHTFEALKGSGKQIILTADKHPKKIGGLEKRLQSR 251 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+ + + E + +I+K + I+ K+ ++ +++ ++A + ++ RE++G Sbjct: 252 FEWGLVADIQPPELETKIAIIKKKCEIN-----KVKLSNDIINYIATVIESNVREIEGIL 306 Query: 376 NQLVFRHSFAPILTAEI---------ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 ++L H+++ ++ +I D+L + N + ++ I VAK NI Sbjct: 307 SKL---HAYSQLMHIDIDLAFTKNVLKDQLQENRAN------LTLDVITNNVAKDLNIKP 357 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 ++ S R + +V R++++YL + +T + P++ + FG +DHT + H ++K+ ++++ D Sbjct: 358 TEIRSKGRSKNLVYARRISIYLCRELTQNTMPQLAQYFGMKDHTAISHTLKKINELMKND 417 Query: 487 ITLKKEVELLKRLIS 501 K ++E L I+ Sbjct: 418 EDFKVKIEELTNKIT 432 >gi|284041472|ref|YP_003391812.1| chromosomal replication initiator protein DnaA [Conexibacter woesei DSM 14684] gi|283945693|gb|ADB48437.1| chromosomal replication initiator protein DnaA [Conexibacter woesei DSM 14684] Length = 453 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 137/479 (28%), Positives = 222/479 (46%), Gaps = 45/479 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E ++ + + L+ V Y W LK S+ +++ + P ++ W+ +R+ Sbjct: 1 MHTQLEHTWSQIQAELRRAVTDSTYHLWLAPLKARSLDGDVLMVGAPEE-IRTWVADRF- 58 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL-----SPINTNISKSPIIL 145 +R+ L + SP+ T + +P+ P Sbjct: 59 -----------ARV-----------LQTCAAAVISPATTIVVVPLDAPLPAEADARPAAP 96 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + + ++ F F+ G NR+A AA ++AE+ Y NPLFI+ Sbjct: 97 PPRPSEAKADESFNPKYTFDQFVIGDGNRLAHAAALAVAELPGQAY-----NPLFIYGPP 151 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL AIAN + V Y T E F RF +A+R + K R+ D+LLI Sbjct: 152 GLGKTHLLHAIANYVRSYGDGMTVRYTTIEAFTNRFITALRSSSVEEFKRRYRDTDILLI 211 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFLQ K + EF H N+L ++ Q+V DR P ++ +L R+R R + G+ + Sbjct: 212 DDVQFLQSKAKTEEEFFHTFNALYETGSQLVVTCDRMPRDMNALAERLRERFESGLVTDI 271 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D R +IL+ R+ + D + + + +A +TT+ R L GA ++V HS Sbjct: 272 RAPDLATRMTILRKRV----QHDGVQLASPDAIEPIADRITTNIRALQGALIRVVAFHSL 327 Query: 385 A--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 PI A + +L L ++ + +IQ + +S L S R V R Sbjct: 328 TGRPIDRA-LVTHVLDGLYPGARPQQRTLAEIQEATCERLGVSPEALRSPDRSARVAWAR 386 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAMYL++ +T + P IGR FG R+HTTV+HA R+ + + D + EL++ L + Sbjct: 387 QVAMYLARELTDETLPAIGRAFGGRNHTTVMHACRRASERIAAD---AEAYELVRALTA 442 >gi|87251938|dbj|BAE79507.1| DnaA [Sphingobium japonicum] Length = 263 Score = 180 bits (456), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 117/268 (43%), Positives = 166/268 (61%), Gaps = 7/268 (2%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL AIA P+ V+Y++AE FM F +A+R N + K LR LLLI Sbjct: 1 GLGKTHLLHAIARLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLI 60 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H +N L+DS ++V ADR P L+++D RI SRL GG+ + Sbjct: 61 DDIQFIAGKGSTQEEFLHTINDLIDSGARIVVTADRAPQMLDAIDARILSRLAGGLVADI 120 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHS 383 ++R +IL+ + AI+ DP + + V+ +AR++ ++ REL+GAFN+L+ + Sbjct: 121 RPAGLDLRLAILEAKRAIAG--DPP--VPDAVVDFLARSIRSNVRELEGAFNKLIAYGQL 176 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + E A +L+ V +++ +++IQ+ A HY I ++ S RR R V RPRQ Sbjct: 177 TGRSIDLEFAQAMLADAVRA-NARRITVDEIQKACAAHYKIDAAEMRSKRRARAVARPRQ 235 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 VAMYL+K MTPRS PEIGR FG RDHTT Sbjct: 236 VAMYLAKKMTPRSLPEIGRIFGGRDHTT 263 >gi|86156431|ref|YP_463216.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-C] gi|85772942|gb|ABC79779.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-C] Length = 457 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 139/471 (29%), Positives = 243/471 (51%), Gaps = 33/471 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + +++ + L+ + D+Y WF+ L+ S+ + + P F + ++++ Y Sbjct: 9 VETPLDDLWSRIDGFLRARCREDLYERWFEPLRPVSLGEGRLQIGAPDKFHRDFVEDNY- 67 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 F+E + G E L + A+ + +P+ + + ++ + Sbjct: 68 ---RGWFEEFIPELTG-ERLRIAFAVDDAPRPIGAPASPPPAAVAARAAEP-------HL 116 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P P + R+ F TF+ G+SN A AAQ++A + G T NPLF+H GLGKT Sbjct: 117 EPRDSRP-NPRYAFDTFVVGASNHFAFAAAQAVAA--NPGRT---WNPLFLHGDSGLGKT 170 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+A+A +++ RV +++E + F +A+ + R LL+DD+QF Sbjct: 171 HLLHAVAHAILEKSGG-RVAIVSSERYTNDFVAALSRGTMDEFRRKYRECSALLVDDVQF 229 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK EF H N L D Q+V ++DR P EL+ LD R+ SR + G+ V + + ++ Sbjct: 230 LAGKDKTAEEFFHTFNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEVPEF 289 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL+ + + K+++ ++V +A+ + ++ REL+GA +L +FA + Sbjct: 290 ETRAAILQKKADVE-----KIDLPDDVTQLLAQHIRSNVRELEGALMRLA---AFASLKS 341 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +A ++LS ++ + IE IQ VA HY ++ L S R + + PRQVA Sbjct: 342 EPITVPLARDVLSDVIPPPGYRPP-IEKIQEAVAGHYGLTVAKLTSASREQKIAFPRQVA 400 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 MYL + + F I +F +DHTTV+ AV +V+ +LE+D ++ V L Sbjct: 401 MYLCRELAKEKFQSIAEKFNKKDHTTVIAAVDRVKGLLESDDAVRTAVAQL 451 >gi|328951747|ref|YP_004369081.1| Chromosomal replication initiator protein dnaA [Desulfobacca acetoxidans DSM 11109] gi|328452071|gb|AEB07900.1| Chromosomal replication initiator protein dnaA [Desulfobacca acetoxidans DSM 11109] Length = 461 Score = 179 bits (455), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 134/468 (28%), Positives = 224/468 (47%), Gaps = 37/468 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ES + V K ++ Y W + L+ L P F W++N YL + + Sbjct: 2 ESYWEEVKHIFKGRLASSAYQLWIEPLQASFGNAGEFFLDCPNPFFLHWVRNHYLSDLER 61 Query: 96 LFQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E+ + G +I +R + P+ K S + P IS+ P Sbjct: 62 ----EYRLLTGGTTQIKLRLLKTPAKNKEDHSHRLQSCLP---EISRPPSS--------- 105 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS-HGYTTVRLNPLFIHASVGLGKTHL 212 G L+ F F F+ G+SNR A A++++A D+ +G T LF+ A GLGK+HL Sbjct: 106 -GRLLNKAFTFEQFVVGASNRFAFQASRALAGNDAFYGRT------LFLTAQPGLGKSHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFL 271 QA+ N + +V YLTAE F +A+R KD R D LL++ + FL Sbjct: 159 SQAVGNYIQTNYRHHQVFYLTAEDFANEMVAALRQGAMAQFKDKFRRQCDTLLLEGVHFL 218 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK IQ E C+ L+ L D K++V + P E+ L + SR GGV P+ D+ Sbjct: 219 SGKEKIQAELCYTLDCLADLNKKLVFTSPYLPMEIPHLKQELLSRFTGGVITPIDPPDFS 278 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILT 389 R SIL + +D ++ + EV H+A +T R++ A + L+ + + + Sbjct: 279 TRVSILTRK-----AQDRQVQVPREVKEHLATYLTQDVRQMVSALDNLLLKAATLKTDIN 333 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A+E+L ++ +RIEDIQ++ + Y +S+ +LL R + +V+ R +A+YLS Sbjct: 334 LDLANEVLRDF--QAASQALRIEDIQKLTGQVYQVSQEELLGKSRKKKIVKARNLAIYLS 391 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + ++ R F R H+T++H++ VE+ L+ E++ L+ Sbjct: 392 HHYLQKQLKDLARSF-RRTHSTIIHSLECVERDLKVSAGFAAELQYLE 438 >gi|257783816|ref|YP_003179033.1| chromosomal replication initiator protein DnaA [Atopobium parvulum DSM 20469] gi|257472323|gb|ACV50442.1| chromosomal replication initiator protein DnaA [Atopobium parvulum DSM 20469] Length = 509 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/380 (31%), Positives = 202/380 (53%), Gaps = 27/380 (7%) Query: 145 LGKQTISPVFGSPL------DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 L +QT+ +PL +S F F+ G N +A A ++A D+ G + NP Sbjct: 133 LKQQTLKRRKSNPLYEETSFNSNLTFDRFVVGDENELAHQHALNVAN-DAKG----KANP 187 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN----LK 254 LFI+ + GLGKTHLL+A+ N VY A+ F+ + +A+R N + N L Sbjct: 188 LFIYGASGLGKTHLLRAVQNYINSEDIERVCVYKDADAFVDDYVNAVRKNASGNAATELN 247 Query: 255 DSLRNIDLLLIDDMQFLQGKLIQ-HEFCHLLNSLLDSAKQVVAAADRPPSEL----ESLD 309 ++ +NID+L+IDD+Q L GK + F ++ NSL+D KQ++ AADR P++L + D Sbjct: 248 NNYQNIDVLIIDDVQKLAGKAGTINFFFNIFNSLIDRGKQIILAADRTPAQLGMGSDGFD 307 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE-DPKLNIN---EEVLMHVARTVT 365 RI SR+ GG+ + + YEM+ +++ + KE + L+++ EE+ ++A Sbjct: 308 DRITSRMSGGIVIGIESPSYEMKLNLIHVFCDRAFKERNSSLSVDDMPEEISRYMADKAG 367 Query: 366 TSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHY 422 S R L+G N+ V A I E + + +T +K + IE +Q +V Y Sbjct: 368 QSIRTLEGFCNRCVTGQIKAKESGKNIKQEEIDKIADTLWRRVSKTVNIEKVQEVVENIY 427 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I+ D++ N+R + + PR VA+YL+ + + IG+ FG R H T+LH++ +E+ Sbjct: 428 GINHRDIVGNKRNKEIAEPRHVAIYLAHDLCQYTLVNIGKHFGGRKHATILHSIEVIEEK 487 Query: 483 LETDITLKKEVELLKRLISE 502 ++ D + ++ LK+ I E Sbjct: 488 IKEDKSFYDQISQLKKTILE 507 >gi|224283952|ref|ZP_03647274.1| ATPase for DNA replication initiation [Bifidobacterium bifidum NCIMB 41171] gi|313141104|ref|ZP_07803297.1| chromosomal replication initiator protein dnaA [Bifidobacterium bifidum NCIMB 41171] gi|313133614|gb|EFR51231.1| chromosomal replication initiator protein dnaA [Bifidobacterium bifidum NCIMB 41171] Length = 529 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 184/351 (52%), Gaps = 22/351 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F TF+ G SNR A T A ++AE T NPL I+ GLGKTHLL AI Sbjct: 186 LNKNSTFDTFVPGDSNRFARTVALAVAE-----GTGQEFNPLCIYGGSGLGKTHLLNAIG 240 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQ 272 N ++ + P L+V Y+ +E F F A++ N R +D+LLIDD+QFL Sbjct: 241 NYALVKDPTLKVRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLG 300 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D P L+ + R+ SR G++V + D E Sbjct: 301 GKEATLEQFFHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLET 360 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILT 389 R +IL+ +++ P +VL +A T + REL+GA ++ V S P+ T Sbjct: 361 RIAILRMMASMNGTSTPN-----DVLNLIAERFTENIRELEGALIRVSAVASLSSQPV-T 414 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A++ L T +++ DI AK+++++ +D++ R + + RQVAMYL+ Sbjct: 415 RALAEQTLQDFFTT--DVEIKPTDIIGQTAKYFHLTFDDIVGRARTKNIALARQVAMYLA 472 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 + MT S +IG FG RDHTTV+HA +V + M E EL RL Sbjct: 473 REMTSMSLVDIGEVFGGRDHTTVMHAYTRVSDDMQEKPEIYNYVTELTARL 523 >gi|311063460|ref|YP_003970185.1| Chromosomal replication initiator protein DnaA [Bifidobacterium bifidum PRL2010] gi|310865779|gb|ADP35148.1| Chromosomal replication initiator protein DnaA [Bifidobacterium bifidum PRL2010] Length = 529 Score = 179 bits (454), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 184/351 (52%), Gaps = 22/351 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F TF+ G SNR A T A ++AE T NPL I+ GLGKTHLL AI Sbjct: 186 LNKNSTFDTFVPGDSNRFARTVALAVAE-----GTGQEFNPLCIYGGSGLGKTHLLNAIG 240 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQ 272 N ++ + P L+V Y+ +E F F A++ N R +D+LLIDD+QFL Sbjct: 241 NYALVKDPTLKVRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLG 300 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D P L+ + R+ SR G++V + D E Sbjct: 301 GKEATLEQFFHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLET 360 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILT 389 R +IL+ +++ P +VL +A T + REL+GA ++ V S P+ T Sbjct: 361 RIAILRMMASMNGTSTPN-----DVLNLIAERFTENIRELEGALIRVSAVASLSSQPV-T 414 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A++ L T +++ DI AK+++++ +D++ R + + RQVAMYL+ Sbjct: 415 RALAEQTLQDFFTT--DVEIKPTDIIGQTAKYFHLTFDDIVGRARTKNIALARQVAMYLA 472 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 + MT S +IG FG RDHTTV+HA +V + M E EL RL Sbjct: 473 REMTSMSLVDIGEVFGGRDHTTVMHAYTRVSDDMQEKPEIYNYVTELTARL 523 >gi|310286521|ref|YP_003937779.1| chromosomal replication initiator protein DnaA [Bifidobacterium bifidum S17] gi|309250457|gb|ADO52205.1| chromosomal replication initiator protein DnaA [Bifidobacterium bifidum S17] Length = 529 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/351 (34%), Positives = 184/351 (52%), Gaps = 22/351 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F TF+ G SNR A T A ++AE T NPL I+ GLGKTHLL AI Sbjct: 186 LNKNSTFDTFVPGDSNRFARTVALAVAE-----GTGQEFNPLCIYGGSGLGKTHLLNAIG 240 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQ 272 N ++ + P L+V Y+ +E F F A++ N R +D+LLIDD+QFL Sbjct: 241 NYALVKDPTLKVRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLG 300 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +F H N+L + K++V A+D P L+ + R+ SR G++V + D E Sbjct: 301 GKEATLEQFFHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLET 360 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILT 389 R +IL+ +++ P +VL +A T + REL+GA ++ V S P+ T Sbjct: 361 RIAILRMMASMNGTSTPN-----DVLNLIAERFTENIRELEGALIRVSAVASLSSQPV-T 414 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A++ L T +++ DI AK+++++ +D++ R + + RQVAMYL+ Sbjct: 415 RALAEQTLQDFFTTD--VEIKPTDIIGQTAKYFHLTFDDIVGRARTKNIALARQVAMYLA 472 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRL 499 + MT S +IG FG RDHTTV+HA +V + M E EL RL Sbjct: 473 REMTSMSLVDIGEVFGGRDHTTVMHAYTRVSDDMQEKPEIYNYVTELTARL 523 >gi|116514954|ref|YP_802583.1| DnaA [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285650|sp|Q058F9|DNAA_BUCCC RecName: Full=Chromosomal replication initiator protein DnaA gi|116256808|gb|ABJ90490.1| chromosomal replication initiator protein [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 437 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 119/438 (27%), Positives = 230/438 (52%), Gaps = 46/438 (10%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 +L+ ++ P ++ W LK ++ +NI+++ P F+ WIK +Y+ K+ Sbjct: 12 QLQIKLSPVEFSLWILPLKV-TIKNNIIYIYTPNLFIFRWIKKKYVNIFKKIL------- 63 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 + +++P ++ + K I K+ I S ++ ++ F Sbjct: 64 --------------YKICSNNPPKIIINIEKKKLEKKKCIYKKKNIQIYLHSEINKKYQF 109 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 FI+G SN++A ++ + + Y NPLF++ + GLGKTHLL AI N + + Sbjct: 110 HNFIQGQSNQLAYYSSYKFTKNLKNFY-----NPLFLYGNTGLGKTHLLHAIGNKFLIKN 164 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHL 283 +V+Y+ +E F+ +++++N K+ R+ID+LL+DD+QF K Q E + Sbjct: 165 KKKKVIYIHSENFIQNMVNSLKNNSIDKFKNYYRSIDVLLLDDIQFFSNKKKSQEELFNT 224 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L + +++V AD P + + +++SR + G+++ + + + R IL + Sbjct: 225 FNTLFNKQQKIVLTADCYPEYISGITEQLKSRFKWGLTISINPPELKTRIKIL-----LH 279 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT 403 + + K+ ++ EV ++A+ + ++ REL+G ++ IL+ +++ +LV Sbjct: 280 KAYENKILLSYEVAKYIAKKIFSNVRELEGILKKI-------QILSILNKEKITINLVKK 332 Query: 404 GETKKMRIED------IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 K + + IQ++VAK++NI +D++S +R +++V PRQ+AM L+K +T SF Sbjct: 333 ILNKIKKKKKNINIIYIQKIVAKYFNIRISDMISQKRSQSIVHPRQIAMTLAKKLTHYSF 392 Query: 458 PEIGRRFGDRDHTTVLHA 475 EIG FG +DHTTVL+A Sbjct: 393 SEIGTAFGKKDHTTVLYA 410 >gi|320527128|ref|ZP_08028315.1| replication initiator protein DnaA [Solobacterium moorei F0204] gi|320132456|gb|EFW24999.1| replication initiator protein DnaA [Solobacterium moorei F0204] Length = 457 Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 111/348 (31%), Positives = 188/348 (54%), Gaps = 19/348 (5%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P+ F F+ G NR + AA + A + NPLFI+ + GLGKTHLL +I Sbjct: 114 PIQKDRNFDNFVVGDCNRESHAAALACAMSPGKFF-----NPLFIYGNSGLGKTHLLMSI 168 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 AN +K P +V Y + F+ +AIR+N K + ++DLLL+DD+QFL GK Sbjct: 169 ANYVLKENPTKKVYYTESLKFVETVVNAIRNNKIDEFKQYMYSVDLLLVDDIQFLAGKEK 228 Query: 277 QHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 HE F + N L+++ KQ+ A+DR P E++ L+ R+ SR G+SV + + E +I Sbjct: 229 SHEVFFTIYNELVNNRKQICIASDRLPKEIKGLEDRLISRFSSGLSVGIDSPESETSLAI 288 Query: 336 LKNRLAISQK--EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEI 392 L+ ++ S ED ++++ L ++A + + R+L+GA+N+++F F P Sbjct: 289 LQMKIKTSSYSIED----VDQDGLNYIASNFSGNVRDLEGAWNRVLFYAIQFQPDGGCIR 344 Query: 393 ADELLSHLVN---TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 D +++ L N + + + I ++VA +Y ++R + S R + + R +++YL Sbjct: 345 FDTIMNALKNQSVVSDKTGLSPKKIIKVVADYYGLTRQQVTSKTRTKNIANARHISIYLC 404 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK---KEVE 494 + + S+ +IG FG RDH+T++ A KVE + D + KE+E Sbjct: 405 RKLLDISYIKIGEEFGGRDHSTIISACTKVESQIAKDKAMSAAVKEIE 452 >gi|220915124|ref|YP_002490428.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-1] gi|219952978|gb|ACL63362.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-1] Length = 458 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 137/471 (29%), Positives = 241/471 (51%), Gaps = 32/471 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + +++ + L+ + D+Y WF+ L+ S+ + + P F + ++++ Y Sbjct: 9 VETPLDDLWSRIDGFLRARCREDLYERWFEPLRPVSLDEGRLQIGAPDKFHRDFVEDNY- 67 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 F+E + G E L + A+ + + + + + + + Sbjct: 68 ---RGWFEEFIPELTG-ERLRIAFAVDDAPRPIGAAAAPAPAAVAAARAPE------PHL 117 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P P + R+ F TF+ G+SN A AAQ++A + G T NPLF+H GLGKT Sbjct: 118 DPRDSRP-NPRYAFDTFVVGASNHFAFAAAQAVAA--NPGRT---WNPLFLHGDSGLGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+A+A +++ RV +++E + F +A+ + R LL+DD+QF Sbjct: 172 HLLHAVAHAILEKSGG-RVAIVSSERYTNDFVAALSKGTMDEFRRKYRECSALLVDDVQF 230 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK EF H N L D Q+V ++DR P EL+ LD R+ SR + G+ V + + ++ Sbjct: 231 LAGKDKTAEEFFHTFNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEVPEF 290 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R +IL+ + + K+++ ++V +A+ + ++ REL+GA +L +FA + Sbjct: 291 ETRAAILQKKADVE-----KIDLPDDVTQLLAQHIRSNVRELEGALMRLA---AFASLKS 342 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +A ++L+ ++ + IE IQ VA HY ++ L S R + + PRQVA Sbjct: 343 EPITVPLARDVLADVIPPPGYRPP-IEKIQEAVAGHYGLTVAKLTSASREQKIAFPRQVA 401 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 MYL + + F I +F +DHTTV+ AV +V+ +LE+D ++ V L Sbjct: 402 MYLCRELAKEKFQSIAEKFNKKDHTTVIAAVDRVKGLLESDDAVRTAVAQL 452 >gi|317496618|ref|ZP_07954965.1| chromosomal replication initiator protein DnaA [Gemella moribillum M424] gi|316913283|gb|EFV34782.1| chromosomal replication initiator protein DnaA [Gemella moribillum M424] Length = 343 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 114/356 (32%), Positives = 195/356 (54%), Gaps = 25/356 (7%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++ + F F+ G N A ++A V+ G NPLFI+ VGLGKTHLL AI Sbjct: 1 MNKNYTFENFVVGEGNAFTHNIAWNVA-VEPGGI----YNPLFIYGGVGLGKTHLLHAIG 55 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRD------NCALNLKDSLRNIDLLLIDDMQFL 271 N P+ ++ +++E F+ F ++I+ + + R++D LLIDD+QFL Sbjct: 56 NEMENNFPDFKIECISSEKFLNEFLASIKPMKNKNVGADEDFRRKYRDVDALLIDDIQFL 115 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q+ F H N L + KQ+V +DR PS+L L+ R+ +R G++ + D+E Sbjct: 116 SGKTETQNAFFHTFNELQMNQKQIVLISDRSPSQLNELEDRLVTRFSQGITADITPPDFE 175 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA---PI 387 R +ILK + E + ++EE L +++ ++++ REL+G ++ F + P Sbjct: 176 TRMAILKYKC-----EQFDIQLSEETLTYISNNISSNIRELEGVLKRIKFTATSKNQPPS 230 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 L IA+E+L K + E+I + A Y I +DLLS+ R + VV+ R +A+Y Sbjct: 231 LA--IAEEILKD-TRISPRKNILPENILNVCADFYRIKLDDLLSSSRKKEVVKVRNIAIY 287 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM-LETDITLKKEVELLKRLISE 502 L + +T SFP IG F ++DHT+++++V K+ K+ + + L +++E++K I + Sbjct: 288 LCRELTTLSFPAIGDYF-NKDHTSIIYSVNKIAKLSKDEEPELFEDIEVIKERIGK 342 >gi|297625199|ref|YP_003686962.1| Chromosomal replication initiator protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920964|emb|CBL55501.1| Chromosomal replication initiator protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 488 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 141/468 (30%), Positives = 236/468 (50%), Gaps = 42/468 (8%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 ++ + K +V + V ++VP ++ + I+++ +TI + + R + I V Sbjct: 31 AYLRGAKALTVHESTVMIAVPNDYTRENIESKLRDTIESRLSDVYHREMRLAITVE---- 86 Query: 117 PSVEKTASSPS--------ITKLSPINTNISKSPIILGKQTISP----------VFGSPL 158 PS+E P + + I + +P + +T P + L Sbjct: 87 PSLELDLRPPERDEEAEREVEPVQFIPRQDAPAPSLRAVETPQPASAESADDTAIADGRL 146 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + R+ F F+ GSSNR A AA ++AE Y NPL I+ GLGKTHLL A+ + Sbjct: 147 NPRYTFDNFVIGSSNRFAHAAAVAVAEAPGKAY-----NPLMIYGESGLGKTHLLHALGH 201 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM-QFLQGKL-I 276 N+RV Y++ E F +A+ +N + R+ +L+ D QFL+GK Sbjct: 202 YVRNYYSNVRVKYVSTEEMTNEFINAVGENRTAEFRRKYRDDVDVLLIDDIQFLEGKTQT 261 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N+L ++ +Q+V +DRPP LE L+ R+RSR + G+ + D E R +IL Sbjct: 262 QEEFFYTFNALHNAQRQIVLTSDRPPKALEQLESRLRSRFEWGLITDIQPPDPETRIAIL 321 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI---- 392 + + A L++ VL +A + T+ REL+GA L+ +FA + E+ Sbjct: 322 QRKAAAD-----NLSVPPGVLEFIASKIQTNIRELEGA---LIRVTAFASLNREEVSLAV 373 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+++L L+ G + I A ++ +S +DL+ R +T+V RQ+AMYL + + Sbjct: 374 AEQVLRDLIPDGAEADVTAPTIIHETANYFGVSVDDLIGPSRNQTLVMARQIAMYLCREL 433 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 T S P+IG+ FG +DHTTV+HA RK+ K++ ++ +V EL R+ Sbjct: 434 TDLSLPKIGQEFGGKDHTTVMHADRKIRKLMSERRSVYNQVTELTNRI 481 >gi|158520018|ref|YP_001527888.1| chromosomal replication initiator protein DnaA [Desulfococcus oleovorans Hxd3] gi|158508844|gb|ABW65811.1| chromosomal replication initiator protein DnaA [Desulfococcus oleovorans Hxd3] Length = 460 Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 128/468 (27%), Positives = 230/468 (49%), Gaps = 25/468 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +S++ V + LK V + Y W + L+F S + + L+ P +F K W+ Y K Sbjct: 2 DSVWKKVKADLKTHVPLNNYMMWIEPLEFESAQPDTLVLNCPNSFSKKWVAGNY----EK 57 Query: 96 LFQEEHSRIQGVEILVR-SVALPS--VEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 L E+ + G ++ +R VA P +K + +P T + S + + L + P Sbjct: 58 LIAEKVCGLCGKQVHLRLEVAPPGTGAKKQSPAPDSTAIPSGTHTRSDAQLTLPSVQVKP 117 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G L + + F F+ G+ N A TA S+ G + LF+ + G+GK+HL Sbjct: 118 ATGRVLKADYTFDNFVVGNHNDFAYTAVLSLGARQQSGGRS-----LFLSSRPGMGKSHL 172 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFL 271 QA+ + +IK QP RV Y T E F A + K R D+LLIDD+ L Sbjct: 173 AQALGHQTIKAQPGCRVYYTTVEDFSNEMVYAYTTKSSGAFKKKYRTGFDMLLIDDIHAL 232 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q E +++ +L++ ++V+ A P E+ ++ +++SRL G+ + D+ Sbjct: 233 AGKDRTQEELAMVVDYMLEADRKVLFAGCCLPGEIPKMNDQLKSRLSCGLITTMETPDFT 292 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R IL+ + P+ ++L ++A +T R+L+ L + + + Sbjct: 293 TRVRILEKKARFYGYAVPR-----DILEYLADVLTEDVRQLESGLANLATKSCLLGVPMD 347 Query: 390 AEIADELLSHL-VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A+ ++ ++ V G + ++ I+++V K Y ++ ++ S R V PRQVA+YL Sbjct: 348 RELAESIIKNMAVRNGA---ITLDAIKKVVCKAYGLAAKEIDSRSRKHRVAWPRQVAIYL 404 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S+ T S IGR + +R H TVLH++ VE+ ++ + ++ +EV+ + Sbjct: 405 SRRYTDHSLKAIGRSY-NRYHATVLHSINTVEQAMKANRSVFQEVDYI 451 >gi|291276244|ref|YP_003516016.1| chromosomal replication initiator protein [Helicobacter mustelae 12198] gi|290963438|emb|CBG39267.1| chromosomal replication initiator protein [Helicobacter mustelae 12198] Length = 429 Score = 177 bits (449), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 124/453 (27%), Positives = 220/453 (48%), Gaps = 51/453 (11%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 KN+ + Y S F ++K N +V P +++ WIK +YL+ + ++ E+H Sbjct: 10 FKNEFEIEEYDSIFSQIKIVENPQNSDVVSFIAPNVYIEKWIKTKYLQRLAEIL-EKHYN 68 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 I +P I + T + KS + KQ + + L++ + Sbjct: 69 I--------------------TPEIH----VVTAVKKSHVKSLKQG-AKKMEAALNASYT 103 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TFI+G SN+ A A+ I E Y NP+ + GLGKTHLL AI N I++ Sbjct: 104 FETFIQGDSNKFAYEIAKKICEKQGKAY-----NPVLFYGGTGLGKTHLLNAIGNKVIEK 158 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCH 282 N V+Y+T+E F+ ++ ++ N ++ RN D LLIDD+QF GK+ IQ EF H Sbjct: 159 --NKSVIYITSEQFLNDYSERLKSNTMEKFREKYRNCDYLLIDDIQFFAGKIQIQEEFFH 216 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N L KQ+V AD+ ++ L+ R++SR + G++ + E + I+K + I Sbjct: 217 TFNELHLKNKQIVITADKSLKQILGLEERLKSRCEWGITADIQPPGIETKIEIIKQKCII 276 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-----TAEIADELL 397 E IN++++ +A + + R+++G ++ + + P+L T +A + Sbjct: 277 HHVE-----INQDIIECLAYNIGGNIRQIEG----IILKLNALPLLIGQPITLSMAQNAI 327 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + ++ + I I + A+ +NI +++ S R + + R++ +YLS+ + P S Sbjct: 328 KD-IRKEVSENIDINAIIKATAREFNIKPSEITSKSRATKIAQARRIVIYLSRELIPHSM 386 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 I + +DH+ V A K+ K L+ D L+ Sbjct: 387 AMIAQSLNMKDHSAVSKAGTKINKELKEDPALQ 419 >gi|167755165|ref|ZP_02427292.1| hypothetical protein CLORAM_00670 [Clostridium ramosum DSM 1402] gi|167705215|gb|EDS19794.1| hypothetical protein CLORAM_00670 [Clostridium ramosum DSM 1402] Length = 448 Score = 176 bits (446), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 112/349 (32%), Positives = 187/349 (53%), Gaps = 13/349 (3%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F L+ F F+ GSSNR+A AA ++ + NPLFI+++ GLGKTHLL Sbjct: 102 FRDNLNRTLTFDNFVVGSSNRMAQNAALLVSTNPGSNF-----NPLFIYSNPGLGKTHLL 156 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N + + P LR+ Y+T++ F+ A++ + D +N+D+LLIDD+QFL Sbjct: 157 NAIGNYAKEVNPALRIRYITSKDFVDEVIGAMKGRDGDEIYDKYKNLDILLIDDIQFLFN 216 Query: 274 KLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K E F H+ N L+++ KQ+V +D+ P EL+ ++ R+ SR G+S + ++E Sbjct: 217 KEKSSEIFFHIFNELINNNKQIVITSDKMPEELQGIESRLISRFNSGLSFGIDPPEFETA 276 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +IL+ + I ++P L I ++V+ +A R L+GA +L F ++ Sbjct: 277 RAILEKK--IENLDNPSLIIQDDVVDFMANHYCKDIRSLEGALKRLFFCSIMNHTNNIDM 334 Query: 393 ADELLS----HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A L S +V ++ + E I + A+ Y ++ + L+S + R + PR++ MYL Sbjct: 335 AFALESFKDDKIVQNPKSSLTK-ESILKTTAEFYYLTISQLISKNKTRKLTTPREMCMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + + +F EIG F +RDH+TV+ A +VE ++ D K + LK Sbjct: 394 MRELLDITFAEIGATFSNRDHSTVMKACARVETKIKKDPDYKLAINKLK 442 >gi|218777862|ref|YP_002429180.1| chromosomal replication initiator protein DnaA [Desulfatibacillum alkenivorans AK-01] gi|226735801|sp|B8FFL8|DNAA_DESAA RecName: Full=Chromosomal replication initiator protein DnaA gi|218759246|gb|ACL01712.1| chromosomal replication initiator protein DnaA [Desulfatibacillum alkenivorans AK-01] Length = 454 Score = 176 bits (446), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 134/454 (29%), Positives = 212/454 (46%), Gaps = 28/454 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +++QV Y W L+ + V L P K W+ + Y + Q+ R Sbjct: 17 IRSQVPDQGYLMWIDPLRVVKAAADSVVLGCPNPLAKKWLMDHYRGLLESAMQQAAQRPL 76 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V + V + E +P L P +I + P G L+ F F Sbjct: 77 KVLLEVAECVAEAPETPEEAPQQLCL-PAFADIPR-----------PSSGRLLNRDFTFD 124 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G N A +AA S+A S + PL++ A GLGK+HL QA+ ++ P Sbjct: 125 SFVVGDCNDFAYSAALSVASKRSKLHA-----PLYLLAQTGLGKSHLSQAVGRQVMQESP 179 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK-LIQHEFCHL 283 RV Y+TAE F A+ + K+ R N D L+++D+ FL GK Q E Sbjct: 180 EERVFYITAEDFTNEMIGALNTGTISSFKEKYRRNCDTLILEDVHFLSGKNRTQDELAFT 239 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 L+SL+++ K++V + PSE+ + +RSRL GV L D+ MR IL+ + Sbjct: 240 LDSLMETNKRLVFTSAYLPSEIPKMHDSMRSRLNAGVISSLEAPDFRMRMRILQRK---- 295 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLSHLVN 402 K+ + +V +A +T R L+ L R+S + ++A E++ ++V Sbjct: 296 -ANSAKIALPMDVAEFMASELTGDIRHLESGIKGLAARNSIMGRGIDLKMAREVVGNIVR 354 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 K + + I +MV K+Y ++ DL S R + + RPRQVAMYL + T +S IGR Sbjct: 355 N--RKALTLGVITKMVCKYYRVTEEDLRSRSRKQAIARPRQVAMYLGRRYTDQSLQAIGR 412 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 F +R H T LHAV VE+ + + +++ V L Sbjct: 413 TF-NRYHATALHAVGVVERHIRENGDMREPVLFL 445 >gi|282880759|ref|ZP_06289455.1| chromosomal replication initiator protein DnaA [Prevotella timonensis CRIS 5C-B1] gi|281305293|gb|EFA97357.1| chromosomal replication initiator protein DnaA [Prevotella timonensis CRIS 5C-B1] Length = 470 Score = 175 bits (444), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 127/471 (26%), Positives = 233/471 (49%), Gaps = 50/471 (10%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYLETITKLFQ----- 98 ++ V Y +WF+ + + S + L VP+ F+ +++ Y++ ++K+ + Sbjct: 16 IRENVSEQQYNTWFKPIVYESFEESTRTLLVQVPSPFVYEYLEENYIDLLSKVLRRTFCD 75 Query: 99 -----------EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +EH Q VE E+T S K T +++SP L Sbjct: 76 QIRLKYRIVTDQEHHLTQDVE----------AEQTDLS---VKTQLAKTRVNESPTTLDA 122 Query: 148 ---QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 Q + P L+ F+ +IEG SN++ + SIAE H T + NP+F++ Sbjct: 123 AQPQQLDP----NLNPHQTFNNYIEGDSNKLPRSVGLSIAE---HPRKT-QFNPMFVYGP 174 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G GKTHL+ AI + + RV+Y++A F ++ +A+ N + + + IDLL+ Sbjct: 175 SGCGKTHLINAIGMRTKQLYAQKRVLYVSARLFQVQYTNAVLQNSINDFINFYQTIDLLI 234 Query: 265 IDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+Q ++ Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ Sbjct: 235 VDDIQEWMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNERLLTRFSCGLIAE 294 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRH 382 L + ++ IL +++ ++D L I E+V+ +A T S R+L+G N L+ + Sbjct: 295 LEKPNVQLCIDILNSKI----RKD-GLQILEDVVQFIAETANGSVRDLEGVINSLLAYSV 349 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + + +A ++ V + K + I++I V H+N+S + + R + +V R Sbjct: 350 VYNSTVDMRLAQRVIQRAVKIDD-KPLTIDEILEKVCNHFNVSVSAVNGRSRKQDLVTAR 408 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 QV+MYL++ T IG+ G RDH+TV+H+ +VE+ L+ D E+ Sbjct: 409 QVSMYLAQKYTKMPASRIGKLVGGRDHSTVIHSCSRVEQRLQVDSMFSNEL 459 >gi|169351632|ref|ZP_02868570.1| hypothetical protein CLOSPI_02413 [Clostridium spiroforme DSM 1552] gi|169291854|gb|EDS73987.1| hypothetical protein CLOSPI_02413 [Clostridium spiroforme DSM 1552] Length = 448 Score = 174 bits (442), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 113/355 (31%), Positives = 186/355 (52%), Gaps = 13/355 (3%) Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 Q VF L+ F F+ G SNR+A AA ++ + NPLFI+++ GL Sbjct: 96 QAKKEVFKDNLNKSLTFENFVVGGSNRMAQNAALLVSTNPGSNF-----NPLFIYSNPGL 150 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL AI N + + PNL + Y+T++ F+ A++ + + + +D+LLIDD Sbjct: 151 GKTHLLNAIGNYAKEINPNLNIRYITSKDFVDEVIGAMKGKDGDEIYEKYKQLDILLIDD 210 Query: 268 MQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFL K E F H+ N L+++ KQ+V +D+ P +L+ ++ R+ SR G+S + Sbjct: 211 IQFLFNKEKSSEIFFHIFNELINNNKQIVITSDKMPEDLQGIESRLISRFNSGLSFGIDP 270 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 ++E +IL+ + I ++P L I E+V+ +A R L+GA +L F Sbjct: 271 PEFETARAILEKK--IENLDNPSLIIQEDVIDFMASHYCRDIRSLEGALKRLFFCSIMNC 328 Query: 387 ILTAEIADELLS----HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 ++A L S V T +T + E I + A+ Y ++ + L+S + R + PR Sbjct: 329 TNNIDMAFALESFKDDKKVTTPKTALTK-EIILKTTAEFYYLTIDQLISKNKTRKLTTPR 387 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 ++ MYL + + +F EIG F +RDH+TV+ A +VE + D K + LK Sbjct: 388 EMCMYLMRELLDITFSEIGMTFSNRDHSTVMKACARVEAKIAKDSDYKLAINKLK 442 >gi|315635401|ref|ZP_07890667.1| DNA-directed DNA replication initiator protein [Arcobacter butzleri JV22] gi|315480159|gb|EFU70826.1| DNA-directed DNA replication initiator protein [Arcobacter butzleri JV22] Length = 320 Score = 174 bits (440), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 103/311 (33%), Positives = 178/311 (57%), Gaps = 14/311 (4%) Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 ++ NPLFI+ GLGKTHLLQA+ N +I++ V+Y+T E FM F +I++ + Sbjct: 15 IQYNPLFIYGGTGLGKTHLLQAVGNHAIEKGNT--VIYVTIEQFMNDFTFSIKNKNMEHF 72 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 ++ R D+LLIDD+QFL GK Q EF H N L ++ KQ+V +DR PS++ L R+ Sbjct: 73 RNKYRKCDVLLIDDIQFLSGKEQTQEEFFHTFNELHNAKKQIVMTSDRLPSQIAGLVDRL 132 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 +SR + G++ + + E + +I++ + E + ++ E++ +A + S RE++ Sbjct: 133 KSRFEWGLTADVQIPGLETKIAIIEKK-----SELNGICLSREIINFIATNLDNSIREIE 187 Query: 373 GAFNQLVFRHSFAPILTAEIADELLSHLV--NTGETKK-MRIEDIQRMVAKHYNISRNDL 429 G L+ ++ A +L EI ++ L+ ETK+ +++ DI +VA NI +D+ Sbjct: 188 GV---LIRINASASLLNQEITLPMVQGLLKEQIKETKENVKLPDIINIVANQLNIKPSDI 244 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 S +R TV R++ +YL + +T S P+I + G +DH+ + H ++K +++E D Sbjct: 245 KSKKRTATVANARRIVIYLVRELTHNSMPDIAKFLGMKDHSAISHNIKKANELIEKDENF 304 Query: 490 KKEVELLKRLI 500 K +E LK I Sbjct: 305 KLIIENLKNKI 315 >gi|85057281|ref|YP_456197.1| chromosomal replication initiation protein [Aster yellows witches'-broom phytoplasma AYWB] gi|123766371|sp|Q2NKC5|DNAA_AYWBP RecName: Full=Chromosomal replication initiator protein DnaA gi|84789386|gb|ABC65118.1| chromosomal replication initiation protein [Aster yellows witches'-broom phytoplasma AYWB] Length = 504 Score = 173 bits (438), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 110/347 (31%), Positives = 193/347 (55%), Gaps = 13/347 (3%) Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F F+ G SN A ++ IAE V NPL+I G+GKTHL+QAI N Sbjct: 164 KYSFDNFVVGKSNNFAFKISKKIAEE-----KKVTTNPLYIFGKSGIGKTHLIQAIGNHI 218 Query: 221 IKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 +K + +V+Y+ A+ F+ F + +R + + R+IDLLL+DD+Q + G Q Sbjct: 219 LKNTHSSKKVLYVKADGFIEEFTNQLRKAKMEDFNEKYRDIDLLLVDDIQIMAGATRTQM 278 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF L + L + KQ+V +D+ SEL+++ R+ SR + G+ V + D+ R +ILK Sbjct: 279 EFFKLFDYLYLNQKQIVITSDKQASELKNIMSRLTSRFEAGLMVDIQSPDFNHRLNILKK 338 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELL 397 ++ + ++ L I ++VL +A + + RE++GA +L+ + +F + IA+E L Sbjct: 339 KILEFEPQNT-LKIKKDVLDLIASSFVNNVREMEGALLRLLNYAQTFGYDIDINIANEAL 397 Query: 398 SHLVNTGETKKMR---IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L+ + ++ +E I+ +V+ +NIS DL+S +R + PR +A+YL K + Sbjct: 398 ELLIKSKKSVSYDEDVLEKIKLVVSNFFNISVRDLMSKKRQQKYTFPRHIAIYLIKELKD 457 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +G F R+H+ V A +K++K ++D LKK +EL+ + I+ Sbjct: 458 IPYNIVG-SFFKRNHSAVFKAYQKIKKNSQSDYELKKSLELILKKIN 503 >gi|32266609|ref|NP_860641.1| chromosomal replication initiation protein [Helicobacter hepaticus ATCC 51449] gi|61212728|sp|Q7VH57|DNAA_HELHP RecName: Full=Chromosomal replication initiator protein DnaA gi|32262660|gb|AAP77707.1| chromosomal replication initiator protein DnaA [Helicobacter hepaticus ATCC 51449] Length = 456 Score = 172 bits (437), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 117/429 (27%), Positives = 218/429 (50%), Gaps = 34/429 (7%) Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN 135 VP F+ WIK+ +LE+I F+EE + GV + E S + + N Sbjct: 55 VPNIFVANWIKSNHLESIIDAFEEESN--NGVRPEIHIKVKEKKENVKSLKNNKSMLYFN 112 Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 TN G L+ + F F+ G SN A T A+ + + + Y Sbjct: 113 TN-----------------GLSLNPFYTFENFVVGKSNEYAYTIAKLVLQQQASAY---- 151 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NP+ ++ GLGKTHLL AI N ++ N V+Y+T+E F+ + I+ + +D Sbjct: 152 -NPVLLYGKSGLGKTHLLNAIGNDV--KEKNKNVLYVTSEDFLNDYMDKIKRKTMDSFRD 208 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R D LLIDD+QF GK IQ E H N+L +S KQ+V +D+PP E++ L+ R+R+ Sbjct: 209 KYRKCDYLLIDDVQFFGGKEGIQEELLHTFNTLHNSQKQIVMTSDKPPKEIKGLEERLRT 268 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R + G + + E + +I+K++ ++ ++ + EV+ ++A + + R+++G Sbjct: 269 RFEWGAMAEITNPELETKIAIIKSKCEVN-----RIVLENEVIDYIASNIYGNIRQIEGI 323 Query: 375 FNQLVFRHSFAPILTA-EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 + + + +P ++ +IA +L + + + + +++I ++V+K NI ++++S Sbjct: 324 LSTINAHINLSPESSSLKIAKNVLKNY-QIEKLEGITLDNIIKVVSKELNIKPSEIVSKE 382 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R V R+ +YL+ + S I + G +DH++V A++ ++K + + T + + Sbjct: 383 RNRKVTFARRAVIYLAHSLMINSMNIIAKELGMKDHSSVSKALKAIKKEIAENSTTRNII 442 Query: 494 ELLKRLISE 502 E +K I + Sbjct: 443 EDMKSKIQQ 451 >gi|320352769|ref|YP_004194108.1| chromosomal replication initiator protein DnaA [Desulfobulbus propionicus DSM 2032] gi|320121271|gb|ADW16817.1| chromosomal replication initiator protein DnaA [Desulfobulbus propionicus DSM 2032] Length = 439 Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 123/464 (26%), Positives = 232/464 (50%), Gaps = 37/464 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ + + L + + W + L+ ++ L P F AW+++RYL I + Sbjct: 2 LWNAIKTSLHGAIPESEFGLWIKPLECRRHDDGVLELVGPDRFFCAWVEDRYLGLI-RTK 60 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 E I ++ +++ A P + + KL + S P + +++ P F Sbjct: 61 AAELGEI--TDVRLQAAATPPLRFESGKGGQLKLPGVT---SAGPRL---RSLHPAF--- 109 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 F F+ G SN +A +A Q++A D+ N LF++++ GLGK+HL QA+ Sbjct: 110 -----TFEQFMVGESNLLARSACQALATGDA-----TFGNCLFMNSTTGLGKSHLTQAVV 159 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL-KDSLRNIDLLLIDDMQFLQGKL- 275 + ++ P+ R+ YLTA+ F IR N K + + D+LL++D+ L GK Sbjct: 160 HQVLRSAPSTRLHYLTAQQFSAEMVKGIRTNAMEQFSKKYINDCDMLLVEDVHTLTGKTK 219 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q E +L+ L+ S ++V+ + PP++L +D RSR+ G+ + DYE R I Sbjct: 220 TQEELNTILDYLIKSGRRVILTSALPPTKLAGIDDDFRSRMTSGLVTGIESPDYETRARI 279 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF---APILTAEI 392 ++++L + L +E+++ +A ++ R ++ A + + P L + Sbjct: 280 IRHKLQMH-----GLGADEDLVGFMAESLQGDVRRMESAIIGIKAKSCLLGAPPDLG--M 332 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E++ L+ G + E I+ ++ + + +S DL S R R++ PRQ+AMYL++ Sbjct: 333 VREVVYGLI--GSRADITGEAIRELIGRQFRVSIEDLCSRSRKRSITFPRQLAMYLTRKY 390 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 T +S +IG + +RDH+TVL+A++ + K + T++++VELL Sbjct: 391 TTKSLADIGSLY-NRDHSTVLYAIKTITKDMSQQTTVRQQVELL 433 >gi|167041954|gb|ABZ06692.1| putative bacterial DnaA protein [uncultured marine microorganism HF4000_137B17] Length = 461 Score = 172 bits (436), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 106/340 (31%), Positives = 181/340 (53%), Gaps = 14/340 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L++++ F F+ G SN +A AA++++ Y+ PL ++ +VGLGKTHL+ A Sbjct: 124 TTLNTKYTFGRFVVGKSNELAHAAAEAVSNRPGEVYS-----PLVLYGAVGLGKTHLMHA 178 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + ++ L ++Y T E F + AI + +D R+ D+LL+DD+QFL GK Sbjct: 179 IGHRAVAN--GLSLIYATTEEFTNEYIKAIGEGRTEEFRDRYRSTDVLLLDDIQFLIGKE 236 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q F H N+L + +Q+V +DRP S L L+ RI+SRL GG+ V + D E R + Sbjct: 237 QTQEGFFHTFNALHMTNRQIVITSDRPVSALTLLEDRIQSRLAGGLVVDIQAPDIETRLA 296 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 IL+ ++ E ++++ VL +A + + REL+G+ N++V + +L E+ Sbjct: 297 ILR-----AKAETINQDVSQTVLDFLAERIHKNIRELEGSLNRVVAYADLTGSLLDVELV 351 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L + E + + + VA HY + + L +R + + RQ+AMYL + Sbjct: 352 KRAIDGLADPDEHRAIPDYVVVDAVATHYGVDQQVLKGRKRDKKTAQARQMAMYLMREDG 411 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 IGR G +DHTTV H +++ L D L++++ Sbjct: 412 NMGLTAIGRVLGGKDHTTVAHGCDRIKTQLPVDAQLRRDL 451 >gi|317503721|ref|ZP_07961737.1| DNA-directed DNA replication initiator protein [Prevotella salivae DSM 15606] gi|315665164|gb|EFV04815.1| DNA-directed DNA replication initiator protein [Prevotella salivae DSM 15606] Length = 468 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 128/484 (26%), Positives = 241/484 (49%), Gaps = 48/484 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNR 88 ++V+ +S + + +K V + +WF+ + F + + + VP+ F+ +++ Sbjct: 1 MKVSPDSSWGKAVALIKQNVTQQQFETWFKPIVFEHYDKEKKTILVQVPSLFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPS--------VEKTASSPSI----TKLSPINT 136 +L + + +G ++ R V + + PS KLSP + Sbjct: 61 FLALLKTVLYRTFG--EGAQLTYRVVTDKEHKLTQDLEADGDDAEPSKKQQEAKLSPSSK 118 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + ++ I + LD F ++EG+SN++A + SIAE + + Sbjct: 119 DDTQVADI----------DTQLDPHLNFKNYVEGTSNKLARSLGLSIAEHPAQP----QF 164 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NP+FI+ G GKTHL+ AI + P RV+Y++A F +F A N ++ D Sbjct: 165 NPMFIYGPSGCGKTHLINAIGLRCKQLYPEKRVLYISARLFQTQFVDA---NFHGSINDF 221 Query: 257 LR---NIDLLLIDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 +R ID+L++DD+Q ++ Q F H+ N L + K+++ A+DRPP +L+ ++ R+ Sbjct: 222 IRFYQTIDMLIVDDIQEWVNATKTQDTFFHIFNHLFRNGKRMLLASDRPPVDLKGMNERL 281 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 +R G+ L + E+ ILK+++ + D L+I +EV+ +A T S R+L+ Sbjct: 282 LTRFSCGLIAELEKPNVELCTDILKSKI----RRD-GLHIPDEVIQFIASTANGSVRDLE 336 Query: 373 GAFNQLVFRHSFAPILTAEIADELLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDL 429 G N L+ +++ + ++I L ++ + + +++I V H+++++ + Sbjct: 337 GVINSLL---AYSVVYNSDIDMRLAERVIKRAVKIDDNPLTVDEILDTVCNHFSVTQTAV 393 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 S R R +V RQV MYL++ T IGR G+RDH+TV+H+ +VE L+ D T Sbjct: 394 NSKSRKRDLVTARQVTMYLAQKYTKMPAARIGRLVGNRDHSTVIHSCTQVENRLKIDNTF 453 Query: 490 KKEV 493 K+E+ Sbjct: 454 KEEI 457 >gi|331693900|ref|YP_004330139.1| Chromosomal replication initiator protein dnaA [Pseudonocardia dioxanivorans CB1190] gi|326948589|gb|AEA22286.1| Chromosomal replication initiator protein dnaA [Pseudonocardia dioxanivorans CB1190] Length = 555 Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 115/339 (33%), Positives = 200/339 (58%), Gaps = 18/339 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR + AA ++AE + Y NPLFI GLGKTHLL A+ Sbjct: 215 LNEKYTFDTFVIGASNRFSHAAAVAVAEAPARAY-----NPLFIWGESGLGKTHLLHAVG 269 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + + P +RV Y++ E F F +++RD+ + + R++D+LL+DD+QFL+GK Sbjct: 270 HYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDDVQFLEGKEGT 329 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S KQ+V ++DRPP LE+L+ R+R+R + G+ + + E R +IL Sbjct: 330 QEEFFHTFNTLHNSNKQIVVSSDRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAIL 389 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIAD 394 + + A +L + +VL +A + + REL+GA ++ S P+ T ++A+ Sbjct: 390 RKKAAQD-----RLAVPGDVLEFIAARIERNIRELEGALIRVTAFASLNRQPVDT-QLAE 443 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L L+ ++ I + A+ ++++ ++L + + + + RQ+AMYL + +T Sbjct: 444 IVLRDLIPDSAASEITAPTIMAVTAEFFDVTMDELCGPGKTKALAQARQIAMYLCRELTD 503 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 S P IG+ FG RDHTTV+HA +K + +I+L+++ Sbjct: 504 LSLPRIGQTFGGRDHTTVMHA----DKKIRNEISLRRKT 538 >gi|167764848|ref|ZP_02436969.1| hypothetical protein BACSTE_03240 [Bacteroides stercoris ATCC 43183] gi|167697517|gb|EDS14096.1| hypothetical protein BACSTE_03240 [Bacteroides stercoris ATCC 43183] Length = 463 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 243/477 (50%), Gaps = 45/477 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE+ +++ V Y +WF + + + VP+ F +++++ Sbjct: 12 RCLEI------------IRDNVPEQTYKTWFLPIVPLKYEDKTLVVQVPSQFFYEFLEDK 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +++ + K + +G +++ + V+K +S P T +N + I+ KQ Sbjct: 60 FVDLLRKTLYKVIG--EGTKLMYNVM----VDK-SSRPEKT----VNYESTHRTIMPQKQ 108 Query: 149 TIS--------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 TI P L+ + F TFIEG SN+++ +S+AE + NPLF Sbjct: 109 TIDKAIPQIPVPDLDPHLNPEYNFDTFIEGYSNKLS----RSVAEAVALNPAKTIFNPLF 164 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ + G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + I Sbjct: 165 LYGASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTI 224 Query: 261 DLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G Sbjct: 225 DILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWG 284 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + L E+R +IL+N++ + P EV+ ++A V S R+L+G + Sbjct: 285 MVAELEKPTVELRKNILRNKIHRDGLQFPP-----EVIDYIAENVGNSVRDLEGIVIS-I 338 Query: 380 FRHS--FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 HS + + E+A ++ +VN E+K + I+DI V KH+ + + + R R Sbjct: 339 MAHSTIYNKEIDLELAQRIVRKVVNC-ESKAITIDDIITTVCKHFGLENAAIHTKSRKRE 397 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 VV+ RQ+AMYL+K T S +IG G++DH TVLHA + ++++ E D + + E+E Sbjct: 398 VVQARQIAMYLAKKHTDFSTAKIGTLIGNKDHATVLHACKTIKQLKEVDKSFRAEIE 454 >gi|221135255|ref|ZP_03561558.1| Chromosomal replication initiator protein dnaA [Glaciecola sp. HTCC2999] Length = 267 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/272 (35%), Positives = 165/272 (60%), Gaps = 8/272 (2%) Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + +E F+ A+++N + K R++D LLIDD+QF GK Q EF H N+LL+ Sbjct: 1 MHSERFVQDMVKALQNNAIDDFKRYYRSVDALLIDDIQFFAGKDRSQEEFFHTFNALLEG 60 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 +Q++ +D+ P E++ ++ R++SR G+++ + + E R +IL + + E+ K+ Sbjct: 61 NQQIILTSDKYPKEIQGVEDRLKSRFGWGLTIAIEPPELETRVAIL-----MRKAEENKI 115 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKM 409 + EV +A+ + T+ REL+GA N+++ +F ++ + E L L+ + K + Sbjct: 116 KLPNEVAFFIAKRLRTNVRELEGALNRVIANANFTGREISIDFVREALRDLLAL-QDKLV 174 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 +++IQ+ VA +Y I D+LS RR R+V RPRQ+AM L+K +T S PEIG FG RDH Sbjct: 175 TVDNIQKTVADYYKIKVADILSKRRSRSVARPRQMAMALAKELTNHSLPEIGNGFGGRDH 234 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TTVLHA RK+E++ E ++++ + L R +S Sbjct: 235 TTVLHACRKIEQLKEESHDIQEDYKNLIRTLS 266 >gi|163782527|ref|ZP_02177524.1| chromosome replication initiator protein DnaA [Hydrogenivirga sp. 128-5-R1-1] gi|159882100|gb|EDP75607.1| chromosome replication initiator protein DnaA [Hydrogenivirga sp. 128-5-R1-1] Length = 407 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 110/349 (31%), Positives = 179/349 (51%), Gaps = 35/349 (10%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F+ F+ G NR+A A +A Y NPLFI+ VGLGKTHLLQAI Sbjct: 88 LNVKYSFNNFVVGEGNRLAYEVALEVANSPGSLY-----NPLFIYGGVGLGKTHLLQAIG 142 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N + + VVY +A F AI+ ++ R+IDLLL+DD+QFL GK Sbjct: 143 NFCV--EKGYHVVYKSANDFSEEMVEAIKTGSVKEFRNRYRSIDLLLLDDIQFLSGKTRT 200 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF ++ N + KQ+V A+DR P EL+ + R+ SR +GG+ V + L D + I+ Sbjct: 201 QVEFFNIFNHMFLKEKQIVLASDRHPKELKDVSDRLVSRFEGGLVVEICL-DELTKLEII 259 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 K +L + K+ + + ++ + + + R+++G L R Sbjct: 260 KRKLC-----ELKIEVQDRIVESLMEQTSNNVRDIEGTIRGLKLRG-------------- 300 Query: 397 LSHLVNTGETKKMRIEDIQRM---VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + HL + KK+ + D++++ A H+ I +L ++R + V R R +A YL + +T Sbjct: 301 VEHL----KRKKVSVNDLEKIKLYTAVHFGIEPEELTGSKRSKKVNRARHIAFYLCRKLT 356 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S EI R F DH+TV++ +RK+E+ D L + L++ I + Sbjct: 357 DASLIEIARAFNRNDHSTVIYGIRKIEEERRKDRKLNYIISFLEKHIGD 405 >gi|34539881|ref|NP_904360.1| chromosomal replication initiation protein [Porphyromonas gingivalis W83] gi|188993865|ref|YP_001928117.1| chromosomal replication initiation protein [Porphyromonas gingivalis ATCC 33277] gi|61212688|sp|Q7MXZ1|DNAA_PORGI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735831|sp|B2RGM5|DNAA_PORG3 RecName: Full=Chromosomal replication initiator protein DnaA gi|34396192|gb|AAQ65259.1| chromosomal replication initiator protein DnaA [Porphyromonas gingivalis W83] gi|188593545|dbj|BAG32520.1| chromosomal replication initiator protein DnaA [Porphyromonas gingivalis ATCC 33277] Length = 473 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 130/470 (27%), Positives = 229/470 (48%), Gaps = 30/470 (6%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L++ V Y +WF + S+ + + L VP+ F +++ ++E + + R+ Sbjct: 19 LQDIVDERAYRTWFLPIIPVSIEGDTLTLQVPSQFFCEFLEGNFVEQLRTVL----GRVI 74 Query: 106 GVEILVRSVAL--PSVEKTASSPSITKLSPINTNISKSPIIL--------GKQTISPVFG 155 G ++ AL S K + ++ + + + L + + F Sbjct: 75 GPNASLQYNALVDNSSPKYPGTVTLAGCADGGQAAEQFDVNLLHRHMPNAATHSEAQDFD 134 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+SR F F + N VA + A++IA S G T +NP FI+ + G+GKTHL A Sbjct: 135 TQLNSRLNFRNFYQSECNYVARSVAEAIAA--SPGNTP--MNPFFIYGASGVGKTHLCHA 190 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + + P L+V+Y+++ F +F +A R + + +D+L+IDD+Q+L GK Sbjct: 191 LGLRVREMHPRLKVLYVSSHLFEMQFTTAARMGTINDFIAFYQQVDVLIIDDIQWLIGKK 250 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q F + N L KQ+V +D+PP +L ++ R+ +R+ G V + D ++R Sbjct: 251 KTQLAFFQVFNHLYMLGKQIVLTSDKPPVDLNGMEERLVTRMAGATCVKIERPDLKLRRE 310 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL+ R S + ++E VL +A V + REL+G L+ + + ++ EI Sbjct: 311 ILQQRTLQS-----GVRLDESVLNFIAENVCDNVRELEGTLVSLI---TNSVVVGKEIDL 362 Query: 395 ELLSHLVNTG---ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +V E K++ IE IQ+ V++ + + + S R + +V+ RQV M+LSK Sbjct: 363 TFAKRIVRQAVRLEKKEVTIECIQQAVSRVFQVQIEQMKSKSRKQDIVQARQVVMFLSKK 422 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S IG G R+H TVLH R V +E + + + VE ++LI+ Sbjct: 423 HTAQSLSAIGELMGGRNHATVLHGCRCVTNEMEMNASFRSSVERAEQLIA 472 >gi|218128622|ref|ZP_03457426.1| hypothetical protein BACEGG_00192 [Bacteroides eggerthii DSM 20697] gi|317475576|ref|ZP_07934838.1| chromosomal replication initiator protein DnaA [Bacteroides eggerthii 1_2_48FAA] gi|217989224|gb|EEC55538.1| hypothetical protein BACEGG_00192 [Bacteroides eggerthii DSM 20697] gi|316908280|gb|EFV29972.1| chromosomal replication initiator protein DnaA [Bacteroides eggerthii 1_2_48FAA] Length = 464 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 132/474 (27%), Positives = 240/474 (50%), Gaps = 39/474 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE+ +++ V Y +WF + + + VP+ F +++++ Sbjct: 12 RCLEI------------IRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDK 59 Query: 89 YLE----TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP-INTNISKSPI 143 +++ T+ K+ E + V + S +V ++ +I P I+ I + P+ Sbjct: 60 FVDLLRKTLYKVIGEGTKLMYNVMVDKSSRPEKTVNYESTHRTIIPQKPTIDKAIPQIPV 119 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 P L+ + F TFIEG SN+++ +S+AE + NPLF++ Sbjct: 120 --------PDLDPHLNPEYNFDTFIEGYSNKLS----RSVAEAVALNPAKTIFNPLFLYG 167 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID+L Sbjct: 168 ASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDIL 227 Query: 264 LIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 228 IIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVA 287 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 L E+R +IL+N++ + P EV+ ++A V S R+L+G + H Sbjct: 288 ELEKPTVELRKNILRNKIHRDGLQFPP-----EVIDYIAENVGNSVRDLEGIVIS-IMAH 341 Query: 383 S--FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + + E+A ++ +VN E+K + I+DI V KH+ + + + R R VV+ Sbjct: 342 STIYNKEIDLELAQRIVRKVVNC-ESKSITIDDIITTVCKHFGLENAAIHTKSRKREVVQ 400 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RQ+AMYL+K T S +IG G++DH TVLHA + ++++ E D + + E++ Sbjct: 401 ARQIAMYLAKNHTDFSTAKIGTLIGNKDHATVLHACKTIKQLKEVDKSFRAEID 454 >gi|329957669|ref|ZP_08298144.1| replication initiator protein DnaA [Bacteroides clarus YIT 12056] gi|328522546|gb|EGF49655.1| replication initiator protein DnaA [Bacteroides clarus YIT 12056] Length = 464 Score = 171 bits (433), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 135/477 (28%), Positives = 244/477 (51%), Gaps = 45/477 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE+ +++ V Y +WF + + + VP+ F +++++ Sbjct: 12 RCLEI------------IRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDK 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +++ + K + +G +++ + V+K +S P T +N + II KQ Sbjct: 60 FVDLLRKTLYKVIG--EGTKLMYNVM----VDK-SSRPEKT----VNYESTHRTIIPQKQ 108 Query: 149 TIS--------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 TI P L+ + F TFIEG SN+++ +S+AE + NPLF Sbjct: 109 TIDKAIPQIPVPDLDPHLNPEYNFDTFIEGYSNKLS----RSVAEAVALNPAKTIFNPLF 164 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ + G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + I Sbjct: 165 LYGASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTI 224 Query: 261 DLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G Sbjct: 225 DILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWG 284 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + L E+R +IL+N++ + P EV+ ++A V S R+L+G + Sbjct: 285 MVAELEKPTVELRKNILRNKIHRDGLQFPP-----EVIDYIAENVGNSVRDLEGIVIS-I 338 Query: 380 FRHS--FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 HS + + E+A ++ +VN+ E+K + I+DI V KH+ + + + R R Sbjct: 339 MAHSTIYNKEIDLELAQRIVRKVVNS-ESKAITIDDIITTVCKHFGLENAAIHTKSRKRE 397 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 VV+ RQ+AMYL+K T S +IG G++DH TVLHA + ++++ E D + + E++ Sbjct: 398 VVQARQIAMYLAKNHTDFSTAKIGTLIGNKDHATVLHACKTIKQLKEVDKSFRAEIK 454 >gi|319899889|ref|YP_004159617.1| chromosomal replication initiator protein DnaA [Bacteroides helcogenes P 36-108] gi|319414920|gb|ADV42031.1| chromosomal replication initiator protein DnaA [Bacteroides helcogenes P 36-108] Length = 463 Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 133/482 (27%), Positives = 245/482 (50%), Gaps = 39/482 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE+ +++ V Y +WF + + + VP+ F +++++ Sbjct: 12 RCLEI------------IRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDK 59 Query: 89 YLETITKLFQE---EHSRIQGVEILVRSVALPSVEKTASSPSITK-LSPINTNISKSPII 144 +++ + K + E +++ ++V + P EKT + S + + P T I K Sbjct: 60 FVDLLRKTLYKVIGEGTKLM-YNVMVDKSSRP--EKTVNYESTNRTIIPQKTVIDKQI-- 114 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 Q I P L+ + F TFIEG SN+++ +S+AE + NPLF++ + Sbjct: 115 --PQIIVPELDPHLNPEYNFETFIEGYSNKLS----RSVAEAVALNPAKTIFNPLFLYGA 168 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID+L+ Sbjct: 169 SGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILI 228 Query: 265 IDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 229 IDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAE 288 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 L E+R +IL+N++ + P EV+ ++A V S R+L+G ++ + Sbjct: 289 LEKPTVELRKNILRNKIHRDGLQFPP-----EVIDYIAENVGDSVRDLEGIVISIM---A 340 Query: 384 FAPILTAEIADELLSHLVN---TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + I EI EL +V E+K + ++DI V KH+ + + + R R VV+ Sbjct: 341 HSTIYNKEIDLELTQRIVRKVVNSESKSITVDDIINTVCKHFGLDTATIHTKSRKREVVQ 400 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AM+L+K T S +IG G +DH TVLHA + ++++ E D + + E++ ++ ++ Sbjct: 401 ARQIAMFLAKNYTDFSTAKIGALIGHKDHATVLHACKTIKELKEVDKSFRAEIDEIQSVL 460 Query: 501 SE 502 + Sbjct: 461 KK 462 >gi|195952381|ref|YP_002120671.1| chromosomal replication initiator protein DnaA [Hydrogenobaculum sp. Y04AAS1] gi|195931993|gb|ACG56693.1| chromosomal replication initiator protein DnaA [Hydrogenobaculum sp. Y04AAS1] Length = 444 Score = 171 bits (432), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 117/441 (26%), Positives = 223/441 (50%), Gaps = 33/441 (7%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEE-HSRIQGVEILVRSVALPSVEKTASS------- 125 L PT K WI +T+ + ++E + + ++++++ P+++ + S+ Sbjct: 19 LECPTEQSKNWIH----QTLGNILRDEAYKKGFSIKLVIKEQDNPNIDISYSTYRDSVDR 74 Query: 126 PSITKLSPINTNISKSPIILGKQTISPV-----FGSPLDSRFVFSTFIEGSSNRVALTAA 180 + +P + +I P K S V F + S++ F FI G N VA A+ Sbjct: 75 QTAVDKAPFSMSIPSYPNAETKLNPSDVKNKTAFKEGISSKYTFDNFIVGKQNEVAYRAS 134 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +A ++ Y NPLFI+ VG GKTHLLQAI N + + V+Y + F Sbjct: 135 LEVATDENSIY-----NPLFIYGKVGSGKTHLLQAIGNRAYSLGKS--VIYTSMNDFTEE 187 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 ++ ++ ++ + +D+LLIDD+QFL GK Q E ++ N L K +V A+D Sbjct: 188 MVYYLKAGNIISFREKYKGVDILLIDDIQFLSGKERTQMELFNIFNYLFQYNKHIVFASD 247 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 + P +++ + R+ SR +GG+ V + D +++ SI+K ++ I LN++E ++ + Sbjct: 248 KHPRDIKDISERLVSRFEGGLLVETSIDD-QIKLSIIKQKIQIYG-----LNVDERLISY 301 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 + T + RE++G Q+ + IL A + + T K++ I+ I++ VA Sbjct: 302 IKDNTTNNAREIEGLVLQI--KAKGVSILEAYNSATHYNSTTVTNTPKEISIDKIKKAVA 359 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++NI + + + + + +A++LS+ T S EI + F + H++V H+++K+ Sbjct: 360 NYFNIGMDIFNKSYKNKKYATAKHIAIFLSREFTGFSLAEIAKAFNIKSHSSVNHSIKKI 419 Query: 480 EKMLETDITLKKEVELLKRLI 500 EK ++ D T++ V L+ +I Sbjct: 420 EKQIKEDKTIQYSVSSLREII 440 >gi|261368844|ref|ZP_05981727.1| ATPase [Subdoligranulum variabile DSM 15176] gi|282569116|gb|EFB74651.1| ATPase [Subdoligranulum variabile DSM 15176] Length = 436 Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 115/337 (34%), Positives = 179/337 (53%), Gaps = 23/337 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F FI+G SN+ A AAQ++A S Y NPLFI+ GLGKTHLL AI Sbjct: 105 FTFENFIKGPSNQFAYAAAQAVAANPSGAY-----NPLFIYGPSGLGKTHLLNAIQIEIK 159 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 K P+ +VY+ E F +A++ + R D+LLIDD+QFL GK Q EF Sbjct: 160 KNHPDFNIVYVDCEMFTNEIITAVKTATTEQFRQKYRQADVLLIDDIQFLAGKESTQEEF 219 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L + +Q+V A+DRP E++SL+ R+R+R + G++ + D+E R +I+K + Sbjct: 220 FHTFNTLHNDGRQIVIASDRPAKEIKSLEERLRTRFEWGLTADIQPPDFETRVAIVKRK- 278 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGA---FNQLVFRHSFAP---ILTAEIAD 394 E L++ ++V ++A + + R+L+GA N AP + T I D Sbjct: 279 ----AELLNLDLPDDVAEYIANHLKQNIRQLEGAVKKLNAYYMLEGIAPCIGVTTTAIKD 334 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L N + + IE I VA+ YN+ D+ +R V RQ+ MY+ + +T Sbjct: 335 TL-----NDSQPIPVTIEKILNEVARTYNVMPADIRGKKRNANVSAARQMTMYIIREVTG 389 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 S IG+ F RDH+TV+++++ + + + D LK+ Sbjct: 390 MSMEAIGQEF-QRDHSTVVYSIKTMAENITKDQHLKE 425 >gi|86169601|gb|ABC87040.1| chromosomal replication initiation protein [Fructobacillus fructosus KCTC 3544] Length = 290 Score = 169 bits (428), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 97/298 (32%), Positives = 173/298 (58%), Gaps = 18/298 (6%) Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN----LKDSLRNIDLLLIDDMQ 269 + + + K PN R+ Y TAE F+ F +++R N K + R++D+LL+DD+Q Sbjct: 1 KQLETTTTKTNPNARIKYATAEDFLNDFTNSLRKGNDTNATALFKKTYRSLDMLLVDDIQ 60 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F GK +Q EF + N+L + KQ+V +DR P+++ L R++SR + G++ + D Sbjct: 61 FWSGKPQVQEEFFNTFNALTKANKQIVMTSDRYPNDIPDLQDRLKSRFEQGITSDIQKPD 120 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN----QLVFRHSF 384 + + IL+N +E +L+I +VL + ++ + R L+GAF+ ++ F++ Sbjct: 121 VQTKVGILRN-----MQEKNELDIPNDVLQLIGESIDGNVRTLEGAFHSFEAKIRFQNKP 175 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 A I TA+I + +N + + +E IQ +VA ++ + +D+ S+RR +V R V Sbjct: 176 ATIETAKI----ILEEINANKKPVITVERIQEVVADYFMQTVDDMKSSRRQSDIVGARHV 231 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 A+YL++ MT S P+IG+ FG+RDH+++ HA K+E+ +E D +K+ V+ L IS+ Sbjct: 232 AIYLTRTMTDMSLPQIGKAFGNRDHSSISHAFTKIEEQIEKDTRMKEMVQSLAEEISD 289 >gi|308274127|emb|CBX30726.1| Chromosomal replication initiator protein dnaA [uncultured Desulfobacterium sp.] Length = 453 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 133/468 (28%), Positives = 234/468 (50%), Gaps = 38/468 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY----LE 91 E+I+ + +K + Y W + ++F+ V + ++ LS P F + ++ Y L Sbjct: 8 EAIWNSIKIAVKMTIPEHSYRMWLEPVEFNRVENGVMVLSAPNYFSQKRAQDNYGSLILS 67 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + K+ E I V R L V+K+ P L + I Sbjct: 68 ELKKISGENGRYIIEVSERRRKTGLVKVQKSIQLP------------------LPNENIQ 109 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P +G L F F F+ G +N A TA+ S+A + N LF+ + G+GK+H Sbjct: 110 PHYGRFLRKDFTFDHFVVGGNNEFAFTASLSLA-----AKKNSQQNCLFLLSKTGMGKSH 164 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQF 270 L QA+ + I + P RV YLTAE F A R + K R D+LL++D+ Sbjct: 165 LSQAVGHHIISQYPEERVYYLTAEDFSNEMVQAYRTDSIDKFKGKYRKECDILLLEDVHS 224 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q E L++LLD+ K+++ ++ P ++ L+ +++SR G+ + ++ Sbjct: 225 LSGKERTQIELALTLDTLLDADKKIIFSSCYLPGDIPKLNDKLKSRFSYGIISSIEPPNF 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 R IL+ ++ + + + EEV+ ++A +T R+L+ + R S I + Sbjct: 285 RTRVRILQKKMLSNGYQ-----VQEEVINYLASELTEDVRQLESGLIGVTARSSLMGIPI 339 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A+ ++ ++ K + I+ I+++V KH+NIS DL+S+ R +TV+RPRQ+A+YL Sbjct: 340 NLELAENVVKNIAQ--RKKNITIDIIKKLVCKHFNISLIDLVSSSRKQTVMRPRQIAIYL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S+ T IG+ F ++ H T LH++ +E+ ++ + +LKK+VEL Sbjct: 398 SRRYTDSPLQTIGKCF-NKYHATALHSIGVIERGIKDNGSLKKQVELF 444 >gi|112491279|pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus gi|112491280|pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus gi|112491281|pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus gi|112491282|pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus Length = 323 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 111/342 (32%), Positives = 180/342 (52%), Gaps = 29/342 (8%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ FI G NR+A + E Y NP+FI+ SVG GKTHLLQA Sbjct: 3 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLY-----NPIFIYGSVGTGKTHLLQAAG 57 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + KR RV+Y +A+ F ++ ++ +++DLLL+DD+QFL GK Sbjct: 58 NEAKKR--GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT 115 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H+ N+L KQ++ A+DR P +L+ + R+ SR +GG+ V + L D + RF I+ Sbjct: 116 QIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 174 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 K +L ++ L + +EV+ ++ T + RE++G +L+ F + E Sbjct: 175 KEKL-----KEFNLELRKEVIDYLLEN-TKNVREIEGKI-KLIKLKGFEGLERKE----- 222 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 ++ ++ I VA +Y + D+LS++R + R++AMYL + + S Sbjct: 223 --------RKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSAS 274 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 EI R F +DHTTV+HA+R VE+ + D K V L++ Sbjct: 275 LIEIARAFKRKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLEK 316 >gi|15605842|ref|NP_213219.1| chromosome replication initiator protein DnaA [Aquifex aeolicus VF5] gi|14194659|sp|O66659|DNAA_AQUAE RecName: Full=Chromosomal replication initiator protein DnaA gi|2983000|gb|AAC06612.1| chromosome replication initiator protein DnaA [Aquifex aeolicus VF5] Length = 399 Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 111/342 (32%), Positives = 180/342 (52%), Gaps = 29/342 (8%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ FI G NR+A + E Y NP+FI+ SVG GKTHLLQA Sbjct: 79 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLY-----NPIFIYGSVGTGKTHLLQAAG 133 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + KR RV+Y +A+ F ++ ++ +++DLLL+DD+QFL GK Sbjct: 134 NEAKKR--GYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERT 191 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H+ N+L KQ++ A+DR P +L+ + R+ SR +GG+ V + L D + RF I+ Sbjct: 192 QIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 250 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 K +L ++ L + +EV+ ++ T + RE++G +L+ F + E Sbjct: 251 KEKL-----KEFNLELRKEVIDYLLEN-TKNVREIEGKI-KLIKLKGFEGLERKE----- 298 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 ++ ++ I VA +Y + D+LS++R + R++AMYL + + S Sbjct: 299 --------RKERDKLMQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAMYLCRKVCSAS 350 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 EI R F +DHTTV+HA+R VE+ + D K V L++ Sbjct: 351 LIEIARAFKRKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLEK 392 >gi|224536057|ref|ZP_03676596.1| hypothetical protein BACCELL_00921 [Bacteroides cellulosilyticus DSM 14838] gi|224522316|gb|EEF91421.1| hypothetical protein BACCELL_00921 [Bacteroides cellulosilyticus DSM 14838] Length = 462 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 130/474 (27%), Positives = 242/474 (51%), Gaps = 41/474 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE+ +++ V Y +WF + + + VP+ F +++++ Sbjct: 12 RCLEI------------IRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDK 59 Query: 89 YLE----TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 +++ T+ K+ + + V + S ++E T + I + I I ++PI Sbjct: 60 FVDLLRKTLYKVIGDGTKLLYNVMVDKSSRTTVNLESTPRT-IIPQKKVIGREIPQAPI- 117 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + P L+ + F TFIEG SN+++ + A+++A+ + NPLF + + Sbjct: 118 ---ADLDP----HLNPEYNFETFIEGYSNKLSRSVAEAVAQNPAKTI----FNPLFFYGA 166 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G+GKTHL AI + P+ RV+Y++A F ++ ++R+N + + ++ID+L+ Sbjct: 167 SGVGKTHLANAIGTKIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQSIDILI 226 Query: 265 IDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 227 IDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAE 286 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 L E+R +IL+N++ L EV+ ++A V S R+L+G ++ + Sbjct: 287 LERPTVELRKNILRNKI-----HRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIM---A 338 Query: 384 FAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + I EI EL +V E+K + ++DI +V KH+++ + + R R VV+ Sbjct: 339 HSTIYNKEIDLELTQRIVRKVVKSESKSITVDDIINVVCKHFSLDTATIHTKSRKREVVQ 398 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RQ+AM+L+K T S +IG G +DH TVLHA + ++++ E D T + E++ Sbjct: 399 ARQIAMFLAKSYTDFSTAKIGALIGHKDHATVLHACKTIKELREVDKTFRAEID 452 >gi|116747453|ref|YP_844140.1| chromosomal replication initiator protein DnaA [Syntrophobacter fumaroxidans MPOB] gi|166215364|sp|A0LE53|DNAA_SYNFM RecName: Full=Chromosomal replication initiator protein DnaA gi|116696517|gb|ABK15705.1| chromosomal replication initiator protein DnaA [Syntrophobacter fumaroxidans MPOB] Length = 450 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 133/465 (28%), Positives = 226/465 (48%), Gaps = 40/465 (8%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V +L+ + Y W L+F + + L F W++ + LE KL Sbjct: 8 VRKKLQRSLSKGQYDLWVSTLEFLGIEDGNLILGCQNRFHIEWLREK-LEA--KLLPIAS 64 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 +GV L VA A +P I P I+ S ++ + + P F + R Sbjct: 65 QHFRGVRKLEYRVAQGCA---AGAPEIEGAGP--RQIAFSDVV---KCVGPAF----NPR 112 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F F+ G N+ A AA +A + Y +++ + GLGK+HL A+ N Sbjct: 113 FTFDHFVVGGCNQFAYAAAMGMAN-NQQLYN----QSVYLLSDTGLGKSHLTHAVGNYLR 167 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK-LIQHE 279 R+P LRV Y+T E F ++++ K+ R D+LL++ ++FL GK IQ E Sbjct: 168 NRKPELRVQYVTTEQFANEMIFSLKNGNMEAFKNKFRTGCDVLLLEKIEFLSGKEKIQKE 227 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 + L+ L+D K V+ + P ++ L+ ++SRL GG+ P+ D++ R I+K + Sbjct: 228 LVYTLDELMDRGKTVLCTGNAYPKDIPKLNSELQSRLGGGLLAPIDKPDFKTRIEIIKRK 287 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--API---LTAEIAD 394 S E+ ++ + EV+ ++A +T R+L+ L+ + + PI L E++ Sbjct: 288 ---SHTENIRVPM--EVVEYLADRITGDVRQLESCLVGLMAKSNILRTPITLDLAREVSQ 342 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L L K+ +E IQ+++ ++ I+ +L S R + V R++ +YLS+ T Sbjct: 343 TMLDQL------PKISVEQIQKIICANFRITLEELRSTSRRKQVALARKIGIYLSREYTT 396 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEK-MLETDITLKKEVELLKR 498 S IG+ F R H++VL+AV +V+K M E + LK+EVE L R Sbjct: 397 ESLQSIGKSF-QRSHSSVLYAVNEVQKGMGEANGRLKREVEYLSR 440 >gi|194246591|ref|YP_002004230.1| Chromosomal replication initiator protein [Candidatus Phytoplasma mali] gi|254777910|sp|B3R0L6|DNAA_PHYMT RecName: Full=Chromosomal replication initiator protein DnaA gi|193806948|emb|CAP18380.1| Chromosomal replication initiator protein [Candidatus Phytoplasma mali] Length = 455 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 111/348 (31%), Positives = 196/348 (56%), Gaps = 17/348 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F FI G SN+ A ++ I+E +++NPL+I +VGLGKTHLL +I Sbjct: 103 LNKKYNFKNFIIGESNKFAFEMSKKISENKE-----IKINPLYIFGNVGLGKTHLLHSIG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QGKLI 276 N IK + +V+Y+ A+ F+ F + +++ N K RNID+LL+DD+Q + + K Sbjct: 158 NKIIKNNKDKKVLYVKADEFIEDFINQLKEEKIENFKLKYRNIDVLLMDDIQIMSEAKRT 217 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF L + L + KQ+V +D+ SEL+++ R+ SR + G+ + + D++ R +IL Sbjct: 218 QIEFFKLFDYLYLNNKQIVITSDKNTSELKNIMSRLISRFEAGLIIDIKKPDFKHRINIL 277 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADE 395 ++ + E K+ IN+E+L +A + RE++GA +L + +++ + IA E Sbjct: 278 NQKMY--EFEIKKIKINKEILELIASCFVNNIREMEGALLRLFNYIQTYSNEIDLNIAKE 335 Query: 396 LLSHLV-------NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 +L L+ KK +E I +++ YNI N+LL ++ + PR ++MYL Sbjct: 336 ILKPLLKGKMNNFKNKSYKKEYLEKINIIISSFYNIEINELLGKKKHKKYTLPRHISMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 SK + S+ EIG +F ++H+ + +K+EK +E + KK V+ + Sbjct: 396 SKKLYKFSYNEIG-KFFKKNHSAISKGCKKIEKNIEQNTEFKKSVDFI 442 >gi|46201680|ref|ZP_00054588.2| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 286 Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 132/245 (53%), Gaps = 10/245 (4%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 RLK++VG Y SW + + H V L++PT F++ W+ Y E I L+ E+ I Sbjct: 4 RLKDEVGDAAYRSWLRPITLHDTSEGGVKLALPTRFMRDWVNTHYAERIRTLWGAENPAI 63 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISK---SPIILGKQTISPVFGSPLDSR 161 + VEI+V + S + A+ + +P + + G+PLD+R Sbjct: 64 RNVEIVVEAARAASATQNATKAKAVPAPAAEPARATPPCAPATVPSNDTDEL-GAPLDAR 122 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F F+ G N A AA+ IAE D V NPLF++ VGLGKTHL+ AIA+ Sbjct: 123 FTFKNFVVGKPNEFAWAAARRIAEADQ-----VSFNPLFLYGGVGLGKTHLMHAIAHHIR 177 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 +R P V+YL+AE FM+RF A+R ++ K+ R++D+L+IDD+QF+ GK Q EF Sbjct: 178 ERNPERSVLYLSAEKFMYRFIRALRGQDTMSFKEQFRSVDVLMIDDVQFIAGKDATQEEF 237 Query: 281 CHLLN 285 H N Sbjct: 238 FHTFN 242 >gi|283768635|ref|ZP_06341547.1| chromosomal replication initiator protein DnaA [Bulleidia extructa W1219] gi|283105027|gb|EFC06399.1| chromosomal replication initiator protein DnaA [Bulleidia extructa W1219] Length = 453 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 123/423 (29%), Positives = 211/423 (49%), Gaps = 39/423 (9%) Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVR-SVALPSVEKTASSPSITKLSPINTNISKSPI 143 I+ L+ IT LF+ +R Q +E + + P KT ++P L TN S S I Sbjct: 61 IETSALKDITILFK---ARYQDLEPNFKVQLVQPKDIKTMTTPL---LEDYETNFSSSTI 114 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + F F+ G NR + AA +++ + NPLFI+ Sbjct: 115 QKDR---------------TFENFVIGDCNRESQAAAYAVSLNPGQLW-----NPLFIYG 154 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + GLGKTHLL AIAN K QP +V Y + F+ A++ K + ++D+L Sbjct: 155 NSGLGKTHLLMAIANYIKKHQPEKKVYYTESTKFVETVVHALQTGTIDAFKRYMYSLDVL 214 Query: 264 LIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF+ GK HE F + ++++ KQV +DR P +++ L+ R+ SR G++V Sbjct: 215 LIDDIQFIAGKEKSHEIFFTIYEEMVNNRKQVCITSDREPKDIKDLEDRLASRFLNGLTV 274 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + ++E +IL ++ ++ +I+EE + ++A + REL+GA N+++F Sbjct: 275 GIDSPEFETARAILNQKIKVNDN-----SIDEEGMNYIASNFAGNVRELEGALNRVLFYA 329 Query: 383 -SFAPILTAEIADELLSHLVNTGETKKMR----IEDIQRMVAKHYNISRNDLLSNRRVRT 437 F P I E + H + +K M+ + I R+VA +Y ++ + S R + Sbjct: 330 IQFQPNDDV-IHFETVMHSLKAQSSKTMKSGLNAKKIIRIVADYYGLTSQQIKSRNRTKN 388 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + R ++++L + + IG FG RDH+T++ A+ KVEK +++D +K + L+ Sbjct: 389 IANARHISIFLCRKHLDLPYIRIGEEFGGRDHSTIISAITKVEKQIKSDHIFEKAIHELE 448 Query: 498 RLI 500 I Sbjct: 449 TQI 451 >gi|189463957|ref|ZP_03012742.1| hypothetical protein BACINT_00292 [Bacteroides intestinalis DSM 17393] gi|189438530|gb|EDV07515.1| hypothetical protein BACINT_00292 [Bacteroides intestinalis DSM 17393] Length = 462 Score = 167 bits (423), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 129/474 (27%), Positives = 242/474 (51%), Gaps = 41/474 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE+ +++ V Y +WF + + + VP+ F +++++ Sbjct: 12 RCLEI------------IRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDK 59 Query: 89 YLE----TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 +++ T+ K+ + + V + S ++E T + I + I I ++PI Sbjct: 60 FVDLLRKTLYKVIGDGTKLLYNVMVDKSSRTTVNLESTPRT-IIPQKKIIGKEIPQAPI- 117 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + P L+ + F TFIEG SN+++ + A+++A+ + NPLF + + Sbjct: 118 ---ADLDP----HLNPEYNFETFIEGYSNKLSRSVAEAVAQNPAKTI----FNPLFFYGA 166 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G+GKTHL AI + P+ RV+Y++A F ++ ++R+N + + ++ID+L+ Sbjct: 167 SGVGKTHLANAIGTKIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQSIDILI 226 Query: 265 IDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 227 IDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAE 286 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 L E+R +IL+N++ L EV+ ++A V S R+L+G ++ + Sbjct: 287 LERPTVELRKNILRNKI-----HRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIM---A 338 Query: 384 FAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + I EI EL +V E+K + ++DI +V KH+++ + + R R VV+ Sbjct: 339 HSTIYNKEIDLELAQRIVRKVVKSESKAVTVDDIINVVCKHFSLDTATIHTKSRKREVVQ 398 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RQ+AM+L+K T S +IG G++DH TVLHA + ++++ E D + E++ Sbjct: 399 ARQIAMFLAKSYTDFSTAKIGTLIGNKDHATVLHACKTIKELREVDKAFRAEID 452 >gi|244439|gb|AAB21305.1| DnaA protein [Mycoplasma capricolum, Peptide, 450 aa] Length = 450 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 105/343 (30%), Positives = 184/343 (53%), Gaps = 15/343 (4%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ GSSN A A Q++++ Y NPLFI+ G+GKTHLL+A N Sbjct: 114 FENFVIGSSNEQAFIAVQTVSKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 169 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D RI +R G+S+ + D + +I+K + Sbjct: 229 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRIITRFNMGLSIAIQKLDNKTATAIIKKEI 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADELL 397 + ++ K + E + ++ + R++ G+ ++L F P ++T EI +L Sbjct: 289 ---KNQNIKTEVTNEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKVITIEIISDLF 345 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + T + + ++ I+ +V++ Y IS N + R +++V R +AMYL+K + + Sbjct: 346 RD-IPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKEILNHTL 404 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 405 AQIGEEFGGRDHTTVINAERKIEMMLKKDKQLKKTVDILKNKI 447 >gi|24158831|pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor Length = 324 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 110/342 (32%), Positives = 179/342 (52%), Gaps = 29/342 (8%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ FI G NR+A + E Y NP+FI+ SVG GKTHLLQA Sbjct: 4 LNPKYTLENFIVGEGNRLAYEVVKEALENLGSLY-----NPIFIYGSVGTGKTHLLQAAG 58 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + KR RV+Y +A+ F ++ ++ +++DLLL+DD+QFL GK Sbjct: 59 NEAKKR--GYRVIYSSADDFAQAXVEHLKKGTINEFRNXYKSVDLLLLDDVQFLSGKERT 116 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H+ N+L KQ++ A+DR P +L+ + R+ SR +GG+ V + L D + RF I+ Sbjct: 117 QIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 K +L ++ L + +EV+ ++ T + RE++G +L+ F + E Sbjct: 176 KEKL-----KEFNLELRKEVIDYLLEN-TKNVREIEGKI-KLIKLKGFEGLERKE----- 223 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 ++ ++ I VA +Y + D+LS++R + R++A YL + + S Sbjct: 224 --------RKERDKLXQIVEFVANYYAVKVEDILSDKRNKRTSEARKIAXYLCRKVCSAS 275 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 EI R F +DHTTV+HA+R VE+ + D K V L++ Sbjct: 276 LIEIARAFKRKDHTTVIHAIRSVEEEKKKDRKFKHLVGFLEK 317 >gi|301058134|ref|ZP_07199186.1| chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] gi|300447766|gb|EFK11479.1| chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] Length = 449 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 124/466 (26%), Positives = 230/466 (49%), Gaps = 28/466 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++++ + +++K +V + ++ W + + N + L P F K W+ YL+ I + Sbjct: 2 KTVWGEIKNQIKTRVPENTFSLWIKPIICLQAEKNAIVLGCPNRFSKDWVVENYLDLIRE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 F + V++ V++ +PS +P + I+ G Sbjct: 62 KFDALADKPVDVQL--------KVQRRKRTPSPAAFAPHPDQL----ILPGMPEKKRKKN 109 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+S+F F FI G SN A +A+++IA D Y + L + ++ GLGKTHL QA Sbjct: 110 FLLNSQFTFDRFIVGQSNEFAFSASKNIALGDGCDY-----HSLLMLSNTGLGKTHLSQA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK 274 I ++ + + P RV Y+TAE F +++R+ K+ R + D+LL++++ FL GK Sbjct: 165 IGHSILAKNPRSRVFYMTAEDFTNEMIASLRNRRIEAFKNRYRQSCDVLLLEEVHFLGGK 224 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ E + L++L K+++ + PP ++ + + SRL G+ +G DY R Sbjct: 225 EKIQAELGYTLDALAQDRKKIIFTSSLPPKDIPQMSKELSSRLTSGLVTTIGGPDYHTRI 284 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL+ + + + ++++V+ +A + R+++ A L R + ++ Sbjct: 285 KILEEK-----AKGFNVVLSKDVVHFLANRLKRDVRQMESALKCLKARAELVGAKINMDL 339 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A +++S LV+ E + E I +V +Y +S L S R + PR + YL + Sbjct: 340 AKDVVSALVS--EEGSITTEKIMALVCDYYKVSIEMLGSRSRKKAYAYPRNIYAYLCRKC 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + + IGR +R H+TV++A VEK ++TD +LK +V+LLK+ Sbjct: 398 SDETLEFIGRTI-NRSHSTVVYATELVEKKMKTDRSLKHQVDLLKK 442 >gi|288817322|ref|YP_003431669.1| chromosomal replication initiation protein [Hydrogenobacter thermophilus TK-6] gi|288786721|dbj|BAI68468.1| chromosomal replication initiation protein [Hydrogenobacter thermophilus TK-6] gi|308750929|gb|ADO44412.1| chromosomal replication initiator protein DnaA [Hydrogenobacter thermophilus TK-6] Length = 399 Score = 167 bits (422), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 180/358 (50%), Gaps = 38/358 (10%) Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 G++ + + S L ++ F F+ G +N + +AE Y NPLFI+ V Sbjct: 67 GEREKNEAYPSNLIEKYSFDNFVVGKANELVYKVCIEVAE-----YPGSSFNPLFIYGKV 121 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL AI N + R +V+Y F + ++ ++ ++D+LL+ Sbjct: 122 GLGKTHLLHAIGNRA--RDGGYKVIYSPITDFSDEMIAYLKKGQIEAFRNKYSSVDVLLL 179 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL GK Q E + S+ KQ+V +DR P +L+ + R+ SR + G+ + + Sbjct: 180 DDVQFLSGKERTQIELFRVFESIYSKDKQMVLVSDRHPKDLKDISDRLISRFESGLVIEI 239 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 GL D E + SI+K +L + + ++++V+ H+ + RE++GA L Sbjct: 240 GLDD-ETKLSIIKQKLILYG-----MPLDQKVIDHIFENTGYNVREIEGAIKTL------ 287 Query: 385 APILTAEIADELLSHLVNTGET-KKMRIEDIQRMV---AKHYNISRNDLLSNRRVRTVVR 440 +V ET KK ++DI +V A+H+ + DL + R ++ Sbjct: 288 --------------KVVGIKETPKKKSVKDINFVVEFTARHFKLKPEDLKKEGKERKIIN 333 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 R +AMYL K++ S+ EI R FG +DHT+ ++++RKVE+ + D K + L+R Sbjct: 334 ARHIAMYLCKMVLGTSYAEISRYFGKKDHTSAIYSIRKVEEKIRQDRKFKYMMTFLER 391 >gi|281423570|ref|ZP_06254483.1| bacterial DnaA protein helix-turn-helix protein [Prevotella oris F0302] gi|281402390|gb|EFB33221.1| bacterial DnaA protein helix-turn-helix protein [Prevotella oris F0302] Length = 468 Score = 166 bits (421), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 125/460 (27%), Positives = 229/460 (49%), Gaps = 30/460 (6%) Query: 46 LKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++ V + +WF+ + F ++ + + VP+ F+ +++ +L + + Sbjct: 16 IRQNVTQQQFETWFKPIVFEHYNEATKTILVQVPSLFVYEYLEENFLNLLKTVLYRSFG- 74 Query: 104 IQGVEILVRSVALPSVEKTAS-SPSITKLSP----INTNISKSPIILGKQTISPVFGSPL 158 +G ++ R V + T T P N S SP+ + K + + L Sbjct: 75 -EGAQLTYRVVTDKEHKLTQDLEADPTDAEPRKERSGANQSPSPMDVDK---AADIDTQL 130 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D F ++EG+SN++A + SIAE S + NP+FI+ G GKTHL+ AI Sbjct: 131 DPHLNFKNYVEGTSNKLARSLGLSIAEHPSQP----QFNPMFIYGPSGCGKTHLINAIGL 186 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDMQ-FLQGK 274 + P RV+Y++A F +F A N ++ D +R ID+L++DD+Q ++ Sbjct: 187 RCKQLYPEKRVLYISARLFQSQFVDA---NLHSSINDFIRFYQTIDMLIVDDIQEWVNAT 243 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q F H+ N L + K+++ +DRPP +L+ ++ R+ +R G+ L + E+ Sbjct: 244 KTQDTFFHIFNHLFRNGKRILLVSDRPPVDLKGMNERLLTRFSCGLIAELEKPNVELCTD 303 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 ILK ++ + D L+I +EV+ +A T S R+L+G N L+ + + + +A Sbjct: 304 ILKAKI----RRD-GLHIPDEVIRFIASTANGSVRDLEGVVNSLLAYSVVYNSNVDMRLA 358 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + ++ V + + +++I V H++++ + + S R +V RQV MYL++ T Sbjct: 359 ERVIKRAVKVDDNP-LTVDEILDTVCNHFSVTLSAVNSKSRKHDLVIARQVTMYLAQKYT 417 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 IGR G+RDH+TV+H+ +VE L+ D + K+EV Sbjct: 418 KMPASRIGRLVGNRDHSTVIHSCAQVENRLKVDSSFKEEV 457 >gi|317054732|ref|YP_004103199.1| chromosomal replication initiator protein DnaA [Ruminococcus albus 7] gi|315447001|gb|ADU20565.1| chromosomal replication initiator protein DnaA [Ruminococcus albus 7] Length = 459 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 123/449 (27%), Positives = 222/449 (49%), Gaps = 42/449 (9%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 Y W Q LK + + +N+ +L ++F+K Y + + K F+E VEI+V Sbjct: 35 YRMWIQVLKPYKMENNVAYLLAKSDFVKQQTLTAYGDLLNKAFEEVMGFPIKVEIMVSG- 93 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 +L + I++ P + + F FI GSSN Sbjct: 94 -------DDEEEEKKELRIEDPEITEDPDV-----------------YTFDNFIRGSSNS 129 Query: 175 VALTAAQSIAE-VDSHGYTTVR----LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 +A +++AE D+ V NPL I+ GLGKTHL++AI K P+L++ Sbjct: 130 LAYAFCKAVAEKYDAKNSDNVDPDKVFNPLIIYGDSGLGKTHLMKAIEYKVSKDHPDLKI 189 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 +Y T E F+ A+ +N + RN DLLL+DD+Q + GK +Q EF H N L Sbjct: 190 IYTTGEAFINELVKALEFKDTVNFHEKYRNADLLLVDDIQIIAGKERMQDEFFHTFNELY 249 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 ++ KQ+V +D PS++ L RI +RL GV + D+E R +I+ NR A E Sbjct: 250 NARKQIVFTSDVLPSKMSKLQDRISTRLSLGVLADVQAPDFETRMAII-NRKA----ELL 304 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQ---LVFRHSFAPILTAEIADELLSHLVNTGE 405 L +++ V+ +A + T+ R+L+G + L + +P ++ +A ++ ++ + + Sbjct: 305 GLKLSDNVVRLIAEKLKTNIRQLEGTVKKIKALTMYTNESPSIS--MAQRVIKEIMISNQ 362 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 ++ ++ I VA ++++ +D+ SN R + R++ +Y+ K + ++ +IG Sbjct: 363 PSEITVDRIISEVANAFDVTPDDIKSNHRHSKISIARKITIYILKEVKGMTYTQIGDAL- 421 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +++H+T+ R V K+L+T+ +K V+ Sbjct: 422 NKNHSTMTIHYRDVSKLLKTNKEMKDTVD 450 >gi|221195289|ref|ZP_03568345.1| chromosomal replication initiator protein DnaA [Atopobium rimae ATCC 49626] gi|221185192|gb|EEE17583.1| chromosomal replication initiator protein DnaA [Atopobium rimae ATCC 49626] Length = 531 Score = 166 bits (420), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 120/387 (31%), Positives = 192/387 (49%), Gaps = 26/387 (6%) Query: 137 NISKSPIILGKQTISPVFGSPLD---SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 ++SK II K+ +P+ + S+ F F+ G N A A +A D G Sbjct: 146 HLSKKNIIDAKKRNNPLIEKKITDETSKLTFDRFVVGEENEFAFEQALRVAN-DEKG--- 201 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR---DNCA 250 + NPLFI+ S GLGKTHLL++I N I+ P+ VY A F+ + A+R D Sbjct: 202 -KGNPLFIYGSSGLGKTHLLRSIQNYIIENDPSRLCVYKNATSFIDDYTRAMRNKADGAP 260 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFC-HLLNSLLDSAKQVVAAADRPPSEL---- 305 L ++ ++ID+L+IDD+Q L GK F NSL KQ+V AADR PS+L Sbjct: 261 QILTEAYQDIDVLIIDDVQKLAGKAGTLSFFFDTFNSLKTDGKQIVLAADRTPSDLGLGA 320 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK-------NRLAISQKEDPKLNINEEVLM 358 E D RI +R+ G+ + + YEM+ +++ N + ++EE + Sbjct: 321 EGFDERITTRVSSGIVIGIEQPSYEMKVNLINTFCERIHNEAVTEGLTYLQGTLSEETIQ 380 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQ 415 ++A S R ++G N+ V + A I + + + +T ETK + + IQ Sbjct: 381 YMAERSGQSIRVIEGFCNRCVGEQTRAEEKGKSITRDDIDKIASTVWPKETKIITVTKIQ 440 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + V Y IS +DL+ +R + + R VA++LS+ + + +IG+ FG R H TV H+ Sbjct: 441 QAVTSRYGISHDDLVGQKRSQDIAEARHVAIWLSRNLCDLTLGDIGKNFGGRSHATVKHS 500 Query: 476 VRKVEKMLETDITLKKEVELLKRLISE 502 ++ V+ + L V L+R I+E Sbjct: 501 IKVVDDWQRENKQLYDRVFHLQRDITE 527 >gi|302336540|ref|YP_003801747.1| Chromosomal replication initiator DnaA [Olsenella uli DSM 7084] gi|301320380|gb|ADK68867.1| Chromosomal replication initiator DnaA [Olsenella uli DSM 7084] Length = 532 Score = 166 bits (420), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 116/366 (31%), Positives = 192/366 (52%), Gaps = 29/366 (7%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 +DS+ F F+ G N +A AA+ +A ++ Y NPLFIH GLGKTHLL+AI Sbjct: 173 VDSKLTFDRFVAGEENMLAYEAAKQVANGENKSY-----NPLFIHGKSGLGKTHLLRAIQ 227 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN---LKDSLRNIDLLLIDDMQFLQ-- 272 N + P+ VY TA F+ + A D+ L S +N+D+L+IDD+Q ++ Sbjct: 228 NYIVHNDPSRLCVYRTAAEFIEEYRIAWNDSETSARSVLSKSYQNVDVLIIDDIQNMRTA 287 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES----LDPRIRSRLQGGVSVPLGLHD 328 I+ F N+L+ KQ+V AADR P +L + D R SR+ GV+V + + D Sbjct: 288 AGTIRF-FFETFNALVSHGKQIVCAADRSPLQLGTGDSKFDERETSRMDSGVTVSIQVPD 346 Query: 329 YEMRFSILKNRLAISQKED------PKLN--INEEVLMHVARTVTTSGRELDGAFNQLVF 380 YE++ +++ N K+D P ++ I+EE+ +A T+ R ++G + + Sbjct: 347 YELKLNLINN-FYEHMKQDAINEHLPLMDGTISEEMRRLMADRSGTNIRVIEGFVHACLM 405 Query: 381 RHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 S T E + S TG+ K + ++ IQ+ + +Y+IS NDL+ +R + Sbjct: 406 DASRKKTRDLPFTREDIIRIASSKWPTGQ-KIITVDQIQKAIEGYYDISHNDLVGGKRNK 464 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 ++ PR VA++L++ +T + +IG++FG R H TV H++ V+K D V+ L Sbjct: 465 ELMEPRHVAIWLTRKLTDHTLADIGKKFGGRSHATVEHSIAWVDKAKREDRIFHDRVQTL 524 Query: 497 KRLISE 502 I++ Sbjct: 525 HDSITD 530 >gi|83319700|ref|YP_424001.1| chromosomal replication initiation protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|118707|sp|P24116|DNAA_MYCCT RecName: Full=Chromosomal replication initiator protein DnaA gi|216795|dbj|BAA14415.1| DnaA protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|83283586|gb|ABC01518.1| chromosomal replication initiator protein DnaA [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 450 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 104/343 (30%), Positives = 184/343 (53%), Gaps = 15/343 (4%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ GSSN A A Q++++ Y NPLFI+ G+GKTHLL+A N Sbjct: 114 FENFVIGSSNEQAFIAVQTVSKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 169 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ + D + +I+K + Sbjct: 229 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADELL 397 + ++ K + E + ++ + R++ G+ ++L F P ++T EI +L Sbjct: 289 ---KNQNIKTEVTNEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKVITIEIISDLF 345 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + T + + ++ I+ +V++ Y IS N + R +++V R +AMYL+K + + Sbjct: 346 RD-IPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKEILNHTL 404 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 405 AQIGEEFGGRDHTTVINAERKIEMMLKKDKQLKKTVDILKNKI 447 >gi|160889316|ref|ZP_02070319.1| hypothetical protein BACUNI_01739 [Bacteroides uniformis ATCC 8492] gi|270295909|ref|ZP_06202109.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D20] gi|317479651|ref|ZP_07938776.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_1_36] gi|156861323|gb|EDO54754.1| hypothetical protein BACUNI_01739 [Bacteroides uniformis ATCC 8492] gi|270273313|gb|EFA19175.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D20] gi|316904216|gb|EFV26045.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_1_36] Length = 461 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 128/475 (26%), Positives = 236/475 (49%), Gaps = 43/475 (9%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE+ +++ V Y +WF + + + VP+ F +++++ Sbjct: 12 RCLEI------------IRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDK 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS-----ITKLSPINTNISKSPI 143 +++ + K + +G +++ + S KT S I + ++ I + P+ Sbjct: 60 FVDLLRKTLYKVIG--EGTKLMYNVMVDKSSRKTVDLESTQRTIIPQKQVMDKRIPQIPV 117 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 P L+ + F TFIEG SN+++ +S+AE + NPLF++ Sbjct: 118 --------PELDPHLNPEYNFETFIEGYSNKLS----RSVAEAVALNPAKTIFNPLFLYG 165 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 + G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID+L Sbjct: 166 ASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDIL 225 Query: 264 LIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 226 IIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVA 285 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 L E+R +IL+N++ L +EV+ ++A V S R+L+G ++ Sbjct: 286 ELEKPTVELRKNILRNKI-----HRDGLQFPQEVIDYIAENVGDSVRDLEGIVISIM--- 337 Query: 383 SFAPILTAEIADELLSHLVN---TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + + I EI EL +V E+K + +++I V KH+ + + + R R VV Sbjct: 338 AHSTIYNKEIDLELTQRIVRKVVNSESKAVTVDEIINTVCKHFGLETATIHTKSRKREVV 397 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + RQ+AMYL+K T S +IG G +DH TVLHA + ++++ E D + + E++ Sbjct: 398 QARQIAMYLAKNHTDFSTAKIGALIGHKDHATVLHACKTIKELKEVDKSFRAEID 452 >gi|283777803|ref|YP_003368558.1| chromosomal replication initiator DnaA [Pirellula staleyi DSM 6068] gi|283436256|gb|ADB14698.1| Chromosomal replication initiator DnaA [Pirellula staleyi DSM 6068] Length = 570 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 113/320 (35%), Positives = 172/320 (53%), Gaps = 14/320 (4%) Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+EG NR+AL+AA+S+ + G +++PL G GKTHLL+ I + + Sbjct: 234 SFVEGDGNRIALSAAKSV--LPRLG----KMSPLVFSGPPGCGKTHLLEGIWSHARHHSS 287 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ-HEFCHLL 284 RVVYLTAE F F A+R + + + R+++LLLIDD+QF GK E + + Sbjct: 288 LKRVVYLTAEQFTTHFVEALRGSGLPSFRKKYRDVELLLIDDIQFFAGKQSTLTELLYTI 347 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 +LL +Q+V AADRP S+L L + +RL GG+ + D+ R IL+ RLAI + Sbjct: 348 ETLLREGRQLVLAADRPLSQLRMLGADVVNRLGGGLVCTIDPADFGTRRGILE-RLAIER 406 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNT 403 + + +VL +A ++ R L GA N+L + LT E A+ LS L+ Sbjct: 407 ----SVVVPSDVLDWLAASLEGDARLLSGAMNRLAATAEMSQKALTLESAEAALSDLLGA 462 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + +R+ DI V + + + L S+ + + PR +AM+L++ T + EIGR Sbjct: 463 SR-RAVRMNDIVGAVCNMFGLEPDSLQSSSKSPAISHPRMLAMWLARKYTRAALSEIGRN 521 Query: 464 FGDRDHTTVLHAVRKVEKML 483 FG R HTTVL A KV + L Sbjct: 522 FGRRSHTTVLSAQSKVTRWL 541 >gi|296120275|ref|YP_003628053.1| chromosomal replication initiator protein DnaA [Planctomyces limnophilus DSM 3776] gi|296012615|gb|ADG65854.1| chromosomal replication initiator protein DnaA [Planctomyces limnophilus DSM 3776] Length = 850 Score = 166 bits (419), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 110/354 (31%), Positives = 187/354 (52%), Gaps = 23/354 (6%) Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +P LG+ + + P++ S + G+ N +AL AA+ + + NPL+ Sbjct: 492 APAHLGRTNAAKMSRRPME----LSDLVVGTGNELALAAARKVCD-----EVPAPFNPLY 542 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 + +VG+GKTHLL+ I+ ++ P L V+ +TAE F F A+RD + + RN+ Sbjct: 543 LFGNVGIGKTHLLEGISRQLRRQHPGLNVLMMTAEQFANCFTQALRDKTLPSFRQKFRNV 602 Query: 261 DLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+ FL ++I+ EF H L + + +V ADR P L L + +R G Sbjct: 603 DALLIDDVDFLDNTRVIREEFLHTFTELAERGRAIVLTADRHPKLLSKLGDELVTRFMSG 662 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + + D R I++ + A +I+EE LM VA+ + REL+GA N L Sbjct: 663 LICRVEAPDQATRERIVQMKAARM-----GTDISEEALMWVAQKFRNNVRELEGALNCL- 716 Query: 380 FRHSFAPILTAEI----ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 H++ + + A ++L+ L K +R+ DI++ + + + +L S+ R Sbjct: 717 --HTWYTMSERRVGLATARQILADLERDC-LKIVRLTDIEQTICTLFGVRPRELKSSSRA 773 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 RTV +PR +AM+L++ T ++ EIG+ FG R+H+TV+ A +KV + L+++ L Sbjct: 774 RTVSQPRMLAMFLARKHTQSAYQEIGQHFGGRNHSTVMAAEKKVGEWLDSNSEL 827 >gi|23014789|ref|ZP_00054589.1| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 210 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/215 (41%), Positives = 140/215 (65%), Gaps = 9/215 (4%) Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 +D +Q+V +AD+ PS+LE ++ R+RSR+ G+ + YE+R IL+ S+ E Sbjct: 1 MDQGRQIVISADKSPSDLEGIEERLRSRMACGLVADIHATTYELRLGILQ-----SKAEQ 55 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS--FAPILTAEIADELLSHLVNTGE 405 + ++VL +A + ++ REL+GA N++V HS +T E E+L L+ + Sbjct: 56 MGAIVPQKVLEFLAHKIISNIRELEGALNRVVA-HSQLVGRAITLETTQEVLHDLLRASD 114 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 +++ IE+IQ+ VA+H+ I ++ S RR R V RPRQ+AMYL+K +T RS PEIGR+FG Sbjct: 115 -RRITIEEIQKKVAEHFTIKLAEMSSARRSRQVARPRQIAMYLAKQLTSRSLPEIGRKFG 173 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RDHTTV+HAV+KVE++ E D ++VELL+R++ Sbjct: 174 GRDHTTVMHAVKKVEELKECDHNFAEDVELLRRML 208 >gi|110003908|emb|CAK98248.1| putative chromosomal replication initiator protein dnaa [Spiroplasma citri] Length = 450 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 193/376 (51%), Gaps = 24/376 (6%) Query: 137 NISKSPIILGK-QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 NI+K ++ K T++ + F F+ G SN A+ AA ++A +D + Sbjct: 84 NINKQASVISKIDTLTENNNLAYYENYTFENFVRGDSNHEAMQAALAVA-LD----LGKK 138 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIK-RQPNLRVVYLTAEYFMWRFASAIRDN---CAL 251 NPLFI+ GLGKTHLL AI N + + N RV YL A+ F + A I + Sbjct: 139 WNPLFIYGDSGLGKTHLLHAIENKVNEIYKTNNRVKYLKADEF-GKIAMDILNQGHEIIE 197 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K S D LLIDD+Q L + +E F H+ NS ++ KQ+V +D+ P +L + Sbjct: 198 AFKTSYDIYDCLLIDDIQLLAKRNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEA 257 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI-NEEVLMHVARTVTTSGR 369 RI SR G+S+ L D+E IL+ +L K L + +EE L +A + R Sbjct: 258 RIISRFSYGLSIGLDSPDFETALKILEQKL----KHQNNLGLFSEESLEFIALNFNSDVR 313 Query: 370 ELDGAFNQLVF-----RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 +L+GA +L+F + I A++ + + E K+ + I+++VA +YNI Sbjct: 314 KLEGAIKRLLFLAVMNKKPNEIITLADVEKAFKNAPLQNNE--KITPKKIKQIVADNYNI 371 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + ++S RV V++ RQ+AMY + + F IG FG +DHTTV+++V+KVE + Sbjct: 372 TIKAMMSKSRVSNVMQARQLAMYFCRTLLDEPFTRIGTEFGGKDHTTVMNSVKKVEAHIS 431 Query: 485 TDITLKKEVELLKRLI 500 T+ K V ++R I Sbjct: 432 TNKEFKHLVNAIRRKI 447 >gi|299141383|ref|ZP_07034520.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella oris C735] gi|298577343|gb|EFI49212.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella oris C735] Length = 468 Score = 164 bits (416), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 124/460 (26%), Positives = 228/460 (49%), Gaps = 30/460 (6%) Query: 46 LKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 ++ V + +WF+ + F ++ + + VP+ F+ +++ +L + + Sbjct: 16 IRQNVTQQQFETWFKPIVFEHYNEATKTILVQVPSLFVYEYLEENFLNLLKTVLYRSFG- 74 Query: 104 IQGVEILVRSVALPSVEKTAS-SPSITKLSP----INTNISKSPIILGKQTISPVFGSPL 158 +G ++ R V + T T P N S SP+ + K + + L Sbjct: 75 -EGAQLTYRVVTDKEHKLTQDLEADPTDAEPRKERSGANQSPSPMDVDK---AADIDTQL 130 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D F ++EG+SN++ + SIAE S + NP+FI+ G GKTHL+ AI Sbjct: 131 DPHLNFKNYVEGTSNKLVRSLGLSIAEHPSQP----QFNPMFIYGPSGCGKTHLINAIGL 186 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDMQ-FLQGK 274 + P RV+Y++A F +F A N ++ D +R ID+L++DD+Q ++ Sbjct: 187 RCKQLYPEKRVLYISARLFQSQFVDA---NLHSSINDFIRFYQTIDMLIVDDIQEWVNAT 243 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q F H+ N L + K+++ +DRPP +L+ ++ R+ +R G+ L + E+ Sbjct: 244 KTQDTFFHIFNHLFRNGKRILLVSDRPPVDLKGMNERLLTRFSCGLIAELEKPNVELCTD 303 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIA 393 ILK ++ + D L+I +EV+ +A T S R+L+G N L+ + + + +A Sbjct: 304 ILKAKI----RRD-GLHIPDEVIRFIASTANGSVRDLEGVVNSLLAYSVVYNSNVDMRLA 358 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + ++ V + + +++I V H++++ + + S R +V RQV MYL++ T Sbjct: 359 ERVIKRAVKVDDNP-LTVDEILDTVCNHFSVTLSAVNSKSRKHDLVIARQVTMYLAQKYT 417 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 IGR G+RDH+TV+H+ +VE L+ D + K+EV Sbjct: 418 KMPASRIGRLVGNRDHSTVIHSCAQVENRLKVDSSFKEEV 457 >gi|329960254|ref|ZP_08298696.1| replication initiator protein DnaA [Bacteroides fluxus YIT 12057] gi|328532927|gb|EGF59704.1| replication initiator protein DnaA [Bacteroides fluxus YIT 12057] Length = 465 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 129/476 (27%), Positives = 240/476 (50%), Gaps = 42/476 (8%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 RCLE+ +++ V Y +WF + + + VP+ F +++++ Sbjct: 12 RCLEI------------IRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDK 59 Query: 89 YLETITKLFQE---EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS---- 141 +++ + K + E +++ ++V + P S T ++P I+K+ Sbjct: 60 FVDLLRKTLYKVIGEGTKLM-YNVMVDKSSRPEKTINLESTHRTIIAPQKPVITKAIPEI 118 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 PI P L+ + F TFIEG SN+++ +S+AE + NPLF+ Sbjct: 119 PI--------PELDPHLNPEYNFETFIEGYSNKLS----RSVAEAVALNPAKTIFNPLFL 166 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + + G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID Sbjct: 167 YGASGVGKTHLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTID 226 Query: 262 LLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L+IDD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ Sbjct: 227 ILIIDDIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGM 286 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 L E+R +IL+N++ + P EV+ ++A V S R+L+G ++ Sbjct: 287 VAELERPTVELRKNILRNKIHRDGLQFPP-----EVIDYIAENVGDSVRDLEGIVISIM- 340 Query: 381 RHS--FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 HS + + E+A ++ +VN+ ++K + ++DI V KH+ + + + R R V Sbjct: 341 AHSTIYNKDIDLELAQRIVRKVVNS-DSKAITVDDIINTVCKHFGLETATIHTKSRKREV 399 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 V+ RQ+AM+L+K T S +IG G +DH TVLHA + ++++ E D + E + Sbjct: 400 VQARQIAMFLAKSYTDFSTAKIGTLIGHKDHATVLHACKTIKELKEVDKAFRAEFD 455 >gi|257067224|ref|YP_003153479.1| chromosomal replication initiator protein DnaA [Brachybacterium faecium DSM 4810] gi|256558042|gb|ACU83889.1| chromosomal replication initiator protein DnaA [Brachybacterium faecium DSM 4810] Length = 565 Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 121/352 (34%), Positives = 192/352 (54%), Gaps = 15/352 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+S++ F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL A Sbjct: 216 SRLNSKYTFDTFVIGSSNRFAQAAASAVAETPAKAY-----NPLFIYGGSGLGKTHLLHA 270 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC---ALNLKDSLRNIDLLLIDDMQFLQ 272 + + + P++ V Y+ +E F F ++++ A + R+ID+LLIDD+QFLQ Sbjct: 271 VGHYAQSLYPDVVVRYVNSEEFTNEFINSVQSGQFGKAQEFQRRYRDIDILLIDDIQFLQ 330 Query: 273 -GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 F H N+L +S KQ+V +D PP EL + R+RSR + G+ + D E Sbjct: 331 RAPETMEAFFHTFNTLYNSDKQIVITSDLPPKELGGFEDRMRSRFEMGLMTDVQPPDLET 390 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R +IL+ ++A ++ + EVL ++A + T+ REL+GA ++ HS + + Sbjct: 391 RIAILRKKVA----QENTGEVPHEVLEYIASHIATNIRELEGALIRVQALHSLSRQPMDV 446 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A+ +L L++ + ++ I A ++ +S +++ R R +V RQ+ MYL + Sbjct: 447 TLAESVLKDLLSHDDGAQITASTIIAQTATYFALSVEEIVGTGRSRRLVSARQIGMYLCR 506 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKMLETDITLKKEVELLKRLIS 501 +T IG FG RDHTTV+HA +K+ E M E + EL R+ S Sbjct: 507 ELTDMPLIRIGEEFGGRDHTTVMHANKKISELMKERRAIFNQVTELTARIKS 558 >gi|222100623|ref|YP_002535191.1| Chromosomal replication initiator protein dnaA [Thermotoga neapolitana DSM 4359] gi|221573013|gb|ACM23825.1| Chromosomal replication initiator protein dnaA [Thermotoga neapolitana DSM 4359] Length = 450 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 132/443 (29%), Positives = 223/443 (50%), Gaps = 41/443 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +K +V + WF + ++ N V SV F+K W++ +Y HS Sbjct: 19 IKTRVNRKSWELWFNSFEVKTIEGNKVIFSVGNLFIKEWLEKKY-----------HS--- 64 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V S A+ +V ++ +T S +++ S S ++ K+ V +PL+ + F Sbjct: 65 -----VLSRAVKTVLGHDATYELTYES-FDSHTSYSEPLVKKKA---VLLTPLNPAYTFE 115 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ G N A A+ +A+ + NPLFI+ VGLGKTHLLQ+I N ++R+P Sbjct: 116 NFVVGPGNSFAYHASLEVAK------NPGKYNPLFIYGGVGLGKTHLLQSIGNYIVQREP 169 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQHEFCHL 283 +LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q E H Sbjct: 170 DLRVMYITSEKFLNDLVDSMKEGKLAEFREKYRKKVDVLLIDDIQFLIGKTGVQTELFHT 229 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N L DS KQ+V +DR P L+ R+ SR Q G+ L D E R SI + L + Sbjct: 230 FNELHDSGKQIVICSDREPHMLKEFQDRLISRFQMGLVAKLEPPDRETRKSIARKMLEVE 289 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADELLSHLVN 402 + E P+ ++ VA V + R L GA + LV++ + + + A LL + Sbjct: 290 EGELPEEVLD-----FVAENVDDNLRRLKGAIIKLLVYKETTGREVDLKEAIALLKDFIK 344 Query: 403 TGETKKM--RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 E K + I+++ +V++ ++ + ++LS+ R + R++ MY++K S I Sbjct: 345 P-ERKPILDPIDELIEIVSRVMDVPKEEILSSSRNAKALMARRIGMYIAKTYLKSSLRTI 403 Query: 461 GRRFGDRDHTTVLHAVRKVEKML 483 +F +R H V +V+KV+ L Sbjct: 404 AEKF-NRSHPVVADSVKKVKNSL 425 >gi|298529136|ref|ZP_07016539.1| chromosomal replication initiator protein DnaA [Desulfonatronospira thiodismutans ASO3-1] gi|298510572|gb|EFI34475.1| chromosomal replication initiator protein DnaA [Desulfonatronospira thiodismutans ASO3-1] Length = 449 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 135/435 (31%), Positives = 212/435 (48%), Gaps = 43/435 (9%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV-----RSVALPSVEKTASS 125 I+ L P F+ +W++ R I + Q+ +EI + L S EK +S Sbjct: 38 ILRLQAPNEFVASWVRERLQSMILEAGQDVLGVTPELEISAFRADEAASPLGSPEKAGAS 97 Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 + L PI +NI Q +S R+ F F+ G SN +A A++S Sbjct: 98 ETRMHL-PIQSNI---------QVVSRF-------RYSFQDFVVGPSNELAFVASRSFCR 140 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN--ASIKRQPNLRVVYLTAEYFMWRFAS 243 V + LF+ +S GLGKTHL+Q++ N A + LRV YLTAE F + Sbjct: 141 ------EQVSSDQLFLCSSTGLGKTHLVQSMGNNLAGSSNKEALRVAYLTAEEFACQLIQ 194 Query: 244 AIRDNCALNLKDSLRN-IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 AI+ K R+ ID+L+++D+ F QGK IQ EF +NSL K+VV ++ Sbjct: 195 AIKSKQVERFKARYRDQIDILMLEDIHFFQGKEKIQGEFLSTINSLQGQGKKVVLSSSFL 254 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P EL LD + SRL G + D R IL+ + + Q +++ +EV +A Sbjct: 255 PKELNDLDSNLVSRLCRGFMAVIDKPDLGTRQEILRQKASSLQ-----ISLPQEVSHLLA 309 Query: 362 RTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKK--MRIEDIQRMVA 419 + T R+L+ + LVF+ A +L I E+ ++ + K+ + +E+I R V Sbjct: 310 ERIQTDIRQLESCLSNLVFK---ARMLKERITLEMALEVLKNYDLKEQNLDLEEIIRSVC 366 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 + +++ R + S R + V R +A YL++ T S +IGRRF R H+TVL V V Sbjct: 367 RVFDLPREKVCSKSRKKQHVLARNLAFYLARKYTGHSLKDIGRRFN-RRHSTVLKGVANV 425 Query: 480 EKMLETDITLKKEVE 494 EK + TD L ++++ Sbjct: 426 EKEVNTDTPLGRQLK 440 >gi|461941|sp|P34028|DNAA_SPICI RecName: Full=Chromosomal replication initiator protein DnaA gi|49346|emb|CAA79521.1| DnaA protein [Spiroplasma citri] gi|745456|prf||2016285A DnaA protein Length = 450 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 192/376 (51%), Gaps = 24/376 (6%) Query: 137 NISKSPIILGK-QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 NI+K ++ K T++ + F F+ G SN A+ AA ++A +D + Sbjct: 84 NINKQASVISKIDTLTENNNLAYYENYTFENFVRGDSNHEAMQAALAVA-LD----LGKK 138 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIK-RQPNLRVVYLTAEYFMWRFASAIRDN---CAL 251 NPLFI+ GLGKTHLL AI N + + N RV YL A+ F + A I + Sbjct: 139 WNPLFIYGDSGLGKTHLLHAIENKVNEIYKTNNRVKYLKADEF-GKIAMDILNQGHEIIE 197 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K S D LLIDD+Q L + +E F H+ NS ++ KQ+V +D+ P +L + Sbjct: 198 AFKTSYDIYDCLLIDDIQLLAKRNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEA 257 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI-NEEVLMHVARTVTTSGR 369 RI SR G+S+ L D+E IL+ +L K L + +EE L +A + R Sbjct: 258 RIISRFSYGLSIGLDSPDFETALKILEQKL----KHQNNLGLFSEESLEFIALNFNSDVR 313 Query: 370 ELDGAFNQLVF-----RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 +L+GA +L+F + I A++ + + E K+ + I+++VA YNI Sbjct: 314 KLEGAIKRLLFLAVMNKKPNEIITLADVEKAFKNAPLQNNE--KITPKKIKQIVADSYNI 371 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + ++S RV V++ RQ+AMY + + F IG FG +DHTTV+++V+KVE + Sbjct: 372 TIKAMMSKSRVSNVMQARQLAMYFCRTLLDEPFTRIGTEFGGKDHTTVMNSVKKVEAHIS 431 Query: 485 TDITLKKEVELLKRLI 500 T+ K V ++R I Sbjct: 432 TNKEFKHLVNAIRRKI 447 >gi|301321197|gb|ADK69840.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 399 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 184/343 (53%), Gaps = 15/343 (4%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G+SN A A Q++++ Y NPLFI+ G+GKTHLL+A N Sbjct: 63 FENFVIGASNEQAFIAVQTVSKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 117 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 118 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNKICQNDVLIIDDVQFLSYKEKTNEIF 177 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ + D + +I+K + Sbjct: 178 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 237 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADELL 397 + ++ K + E + ++ + R++ G+ ++L F P I+T EI +L Sbjct: 238 ---KNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLF 294 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + T + + ++ I+ +V++ Y IS N + R +++V R +AM+L+K + + Sbjct: 295 RD-IPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMFLTKEILNHTL 353 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 354 AQIGEEFGGRDHTTVINAERKIETMLKKDKQLKKTVDILKNKI 396 >gi|320101556|ref|YP_004177147.1| chromosomal replication initiator protein DnaA [Isosphaera pallida ATCC 43644] gi|319748838|gb|ADV60598.1| chromosomal replication initiator protein DnaA [Isosphaera pallida ATCC 43644] Length = 487 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 104/294 (35%), Positives = 155/294 (52%), Gaps = 18/294 (6%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 PL +H +VGLGKTHLL+++ + + + P+ R+++LTAE F RF AIR + Sbjct: 172 GPLVLHGAVGLGKTHLLESLHHLAKRLHPSARILHLTAEAFTNRFLEAIRGQNLGGFRAR 231 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R DLL++DD FL K Q EF H N++ VV A DR P LE + +R+R Sbjct: 232 HRQADLLIVDDAHFLAAKRATQDEFLHTYNAVSSQGGLVVVAVDRHPRRLERMSDELRTR 291 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 GGV PL + D E R ++++++ A + + EE++ +A S REL+GA Sbjct: 292 FLGGVVAPLTVPDQETRRALIRSKAAAR-----GVALPEEIVALLADPPRASVRELEGAL 346 Query: 376 N------QLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 N +L R + +P+ E ELL T + I+R VA+ + I+ L Sbjct: 347 NVVLAEVRLTGR-ALSPLWVRERLGELL-----TAPRSSPSLATIERTVARVFGIAPEAL 400 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 R R V PR +AMYL++ S+ EIGR FG R+H+TV+ A ++V L Sbjct: 401 RGQTRSRAVTGPRMLAMYLARRRGRASYAEIGRHFGGRNHSTVMAAEKRVSAWL 454 >gi|61212611|sp|Q6MUM7|DNAA_MYCMS RecName: Full=Chromosomal replication initiator protein DnaA Length = 450 Score = 164 bits (414), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 184/343 (53%), Gaps = 15/343 (4%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G+SN A A Q++++ Y NPLFI+ G+GKTHLL+A N Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 169 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNKICQNDVLIIDDVQFLSYKEKTNEIF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ + D + +I+K + Sbjct: 229 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADELL 397 + ++ K + E + ++ + R++ G+ ++L F P I+T EI +L Sbjct: 289 ---KNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLF 345 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + T + + ++ I+ +V++ Y IS N + R +++V R +AM+L+K + + Sbjct: 346 RD-IPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMFLTKEILNHTL 404 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 405 AQIGEEFGGRDHTTVINAERKIETMLKKDKQLKKTVDILKNKI 447 >gi|42560561|ref|NP_975012.1| chromosomal replication initiation protein [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492057|emb|CAE76654.1| Chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. mycoides SC str. PG1] Length = 479 Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 184/343 (53%), Gaps = 15/343 (4%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G+SN A A Q++++ Y NPLFI+ G+GKTHLL+A N Sbjct: 143 FENFVIGASNEQAFIAVQTVSKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 197 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 198 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNKICQNDVLIIDDVQFLSYKEKTNEIF 257 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ + D + +I+K + Sbjct: 258 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 317 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADELL 397 + ++ K + E + ++ + R++ G+ ++L F P I+T EI +L Sbjct: 318 ---KNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLF 374 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + T + + ++ I+ +V++ Y IS N + R +++V R +AM+L+K + + Sbjct: 375 RD-IPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMFLTKEILNHTL 433 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 434 AQIGEEFGGRDHTTVINAERKIETMLKKDKQLKKTVDILKNKI 476 >gi|51244130|ref|YP_064014.1| chromosomal replication initiator protein DnaA [Desulfotalea psychrophila LSv54] gi|50875167|emb|CAG35007.1| related to chromosomal replication initiator protein DnaA [Desulfotalea psychrophila LSv54] Length = 487 Score = 163 bits (413), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 130/473 (27%), Positives = 233/473 (49%), Gaps = 38/473 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LK + DVY+ W L+ + +V L+ P + A++K YL+ I + S I Sbjct: 24 LKESLSKDVYSLWIAPLESVRQENGVVSLAGPDRYFIAFVKQNYLKEIERSLTGVDSSIT 83 Query: 106 GVEILVRSVALPSVEK-----TASSPSI----------TKLSPINTNISKSPIILGKQTI 150 V L + A+P + + S+P+ + ++ S P L ++ Sbjct: 84 DVRFLEKK-AVPQLRSMMHRTSTSAPTFPVPSVSSASTASTASTASSASSVPRQLRLPSV 142 Query: 151 SPVFGS--PLDSRFVFSTFIEGSSNRVALTAAQSI-AEVDSHGYTTVRLNPLFIHASVGL 207 S L R+ F F+ G SN +A +A ++I A+ D+ G L+I++ GL Sbjct: 143 PKNNASIRALHPRYTFDEFMVGQSNILAESACRAISADADTVGPC------LYINSGTGL 196 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLID 266 GK+HL A+A+ + P R+ Y+TA+ F I++N K + + D+LL++ Sbjct: 197 GKSHLTHAVAHHLLSNSPMTRMHYVTAQQFSAEMVHGIKNNSMDMFKKKYQEDCDILLVE 256 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+ L+GK Q E +L++L+ S K+V+ A+ P EL +D RSR+ G+ + Sbjct: 257 DIHTLKGKKKTQEELNEVLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLITSIQ 316 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D + R I++ + A +L+ +E++ ++A+ V R+++ A + R A Sbjct: 317 APDIKTRSRIVERKAA-----GQRLSFDEDMTSYLAQNVRGDVRQIESAITAIGAR---A 368 Query: 386 PILTAEIADELLSHLVNT--GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 ++ I L+ +V + G + + I+ +++ + +S DL S R +++ PRQ Sbjct: 369 RLMGGYIDMNLIREVVGSVVGCNQSLSSSLIRDLISAQFQVSVEDLQSRSRKKSISLPRQ 428 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +AMYLS+ T S EIGR + RDH+TV+H+V+ + D++L +V LL Sbjct: 429 IAMYLSRKFTEESLAEIGRTY-KRDHSTVIHSVKVITDKARRDMSLGAQVNLL 480 >gi|61212565|sp|Q6ARL8|DNAA_DESPS RecName: Full=Chromosomal replication initiator protein DnaA Length = 479 Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 130/473 (27%), Positives = 233/473 (49%), Gaps = 38/473 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 LK + DVY+ W L+ + +V L+ P + A++K YL+ I + S I Sbjct: 16 LKESLSKDVYSLWIAPLESVRQENGVVSLAGPDRYFIAFVKQNYLKEIERSLTGVDSSIT 75 Query: 106 GVEILVRSVALPSVEK-----TASSPSI----------TKLSPINTNISKSPIILGKQTI 150 V L + A+P + + S+P+ + ++ S P L ++ Sbjct: 76 DVRFLEKK-AVPQLRSMMHRTSTSAPTFPVPSVSSASTASTASTASSASSVPRQLRLPSV 134 Query: 151 SPVFGS--PLDSRFVFSTFIEGSSNRVALTAAQSI-AEVDSHGYTTVRLNPLFIHASVGL 207 S L R+ F F+ G SN +A +A ++I A+ D+ G L+I++ GL Sbjct: 135 PKNNASIRALHPRYTFDEFMVGQSNILAESACRAISADADTVGPC------LYINSGTGL 188 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLID 266 GK+HL A+A+ + P R+ Y+TA+ F I++N K + + D+LL++ Sbjct: 189 GKSHLTHAVAHHLLSNSPMTRMHYVTAQQFSAEMVHGIKNNSMDMFKKKYQEDCDILLVE 248 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+ L+GK Q E +L++L+ S K+V+ A+ P EL +D RSR+ G+ + Sbjct: 249 DIHTLKGKKKTQEELNEVLDTLVKSGKRVLLTANAAPRELAGIDGEFRSRMSAGLITSIQ 308 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D + R I++ + A +L+ +E++ ++A+ V R+++ A + R A Sbjct: 309 APDIKTRSRIVERKAA-----GQRLSFDEDMTSYLAQNVRGDVRQIESAITAIGAR---A 360 Query: 386 PILTAEIADELLSHLVNT--GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 ++ I L+ +V + G + + I+ +++ + +S DL S R +++ PRQ Sbjct: 361 RLMGGYIDMNLIREVVGSVVGCNQSLSSSLIRDLISAQFQVSVEDLQSRSRKKSISLPRQ 420 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +AMYLS+ T S EIGR + RDH+TV+H+V+ + D++L +V LL Sbjct: 421 IAMYLSRKFTEESLAEIGRTY-KRDHSTVIHSVKVITDKARRDMSLGAQVNLL 472 >gi|289547952|ref|YP_003472940.1| chromosomal replication initiator protein DnaA [Thermocrinis albus DSM 14484] gi|289181569|gb|ADC88813.1| chromosomal replication initiator protein DnaA [Thermocrinis albus DSM 14484] Length = 394 Score = 163 bits (412), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 102/330 (30%), Positives = 169/330 (51%), Gaps = 30/330 (9%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++ R+ F F+ G SN++A +AE ++ PLF++ SVGLGKTHLL AI Sbjct: 75 INPRYTFENFVVGPSNQLAYKVCLEVAENPGRSFS-----PLFLYGSVGLGKTHLLHAIG 129 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + R +Y + F A+++ ++ N+D+LL+DD+QFL GK Sbjct: 130 NRA--KTKGYRAMYSSINDFSEEMVKALKEGKIEKFREKYINVDILLLDDVQFLAGKERT 187 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E + L KQ+V +DR P +L+ + R+ SR + G+ + +GL D E R S++ Sbjct: 188 QMELFRVFEKLQTFEKQIVLVSDRHPKDLKDVPDRLVSRFESGLLLEIGLDD-ETRISVI 246 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 K +L + + + V+ +VA + RE++G + ++ Sbjct: 247 KKKLM-----EYGFSPEDSVVSYVAENTGYNVREIEGFIRTM----------------KI 285 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L + + IE + R VAK++ + L ++ + R VV RQ+AMYL K + S Sbjct: 286 LGEVPKPVRRDQRSIETVVRYVAKNFKVDPELLRTDSKDRKVVSARQIAMYLCKTLLGSS 345 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 + EI R FG +DHT+ L+A++KVE+ TD Sbjct: 346 YTEISRYFGKKDHTSALYAIKKVEEKRRTD 375 >gi|308234059|ref|ZP_07664796.1| Chromosomal replication initiator DnaA [Atopobium vaginae DSM 15829] gi|328943456|ref|ZP_08240921.1| DNA-directed DNA replication initiator protein DnaA [Atopobium vaginae DSM 15829] gi|327491425|gb|EGF23199.1| DNA-directed DNA replication initiator protein DnaA [Atopobium vaginae DSM 15829] Length = 567 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 104/348 (29%), Positives = 179/348 (51%), Gaps = 31/348 (8%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S +DS+ F F++G N++A AA +A G NPLFI+ GLGKTHLL+A Sbjct: 208 SEIDSKLTFDRFVQGEENQLAYQAANQVA----CGSCNQSYNPLFIYGKSGLGKTHLLRA 263 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFA-----SAIRDNCALNLKDSLRNIDLLLIDDMQF 270 I N IK P Y TA F+ + S + N L S +NID+L+IDD+Q Sbjct: 264 IQNYIIKNDPTRTCAYKTATEFIEEYTLAWQKSPLERNA---LARSYKNIDVLIIDDIQN 320 Query: 271 LQ--GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE----SLDPRIRSRLQGGVSVPL 324 ++ I+ F NSL+ + KQ+V AADR P EL+ D R SR+ G+++ + Sbjct: 321 MRTAAGTIKF-FFDTFNSLISNGKQIVCAADRSPQELQLGESKFDERETSRMDSGITISI 379 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKL--------NINEEVLMHVARTVTTSGRELDGAFN 376 + +YE++ +++ N + D ++ I EE M++A+ ++ R ++G Sbjct: 380 QVPNYELKLNLINNFYKYI-RHDAEVEHLLIDFGTITEEQRMYMAKIAGSNIRVIEGFVQ 438 Query: 377 QLVFRHSFAPILTAEIADELLSHLVNTGETKKMRI---EDIQRMVAKHYNISRNDLLSNR 433 + ++ ++ + T + I E+IQ+ + Y+IS NDL+ + Sbjct: 439 TCLINAGKRKKEGRIFSNNDIAQIAATKWKPRQHIPTIEEIQKCIEDTYHISHNDLVGDH 498 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 R + + PR + ++L++ +T + +IG++FG+R H T+ H++ +EK Sbjct: 499 RNKELTEPRHICIWLARELTDITLADIGQKFGNRTHATIKHSIAIIEK 546 >gi|313664891|ref|YP_004046762.1| chromosomal replication initiator protein DnaA [Mycoplasma leachii PG50] gi|312949390|gb|ADR23986.1| chromosomal replication initiator protein DnaA [Mycoplasma leachii PG50] Length = 450 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 105/343 (30%), Positives = 183/343 (53%), Gaps = 15/343 (4%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ GSSN A A Q++++ S G V NPLFI+ G+GKTHLL+A N Sbjct: 114 FENFVIGSSNEQAFIAVQTVSK--SPG---VSYNPLFIYGESGMGKTHLLKAAKNYIESN 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 169 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+ + + D + +I+K + Sbjct: 229 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLGIAIQKLDNKTAIAIIKKEI 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADELL 397 + ++ K + E + ++ + R++ G+ ++L F P +T EI +L Sbjct: 289 ---KNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKTITIEIISDLF 345 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + T + + ++ I+ +V++ Y IS N + R + +V R +AMYL+K + + Sbjct: 346 RD-IPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKLIVTARHIAMYLTKEILNHTL 404 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 405 AQIGEEFGGRDHTTVINAERKIEAMLKKDKQLKKTVDILKNKI 447 >gi|86169603|gb|ABC87041.1| chromosomal replication initiation protein [Fructobacillus ficulneus] Length = 262 Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 98/269 (36%), Positives = 151/269 (56%), Gaps = 16/269 (5%) Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD------NCALNLKDSLRNIDLLLIDD 267 Q+I N P R+ Y TAE F+ F ++R+ N K + R++D+LLIDD Sbjct: 1 QSIGNEYATTHPKARIKYATAEDFLNDFTDSLREGNKADSNATAKFKKTYRSLDMLLIDD 60 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK +Q EF + N+L KQ+V +DR P+++ L R+ SR + G++ + Sbjct: 61 IQFWSGKEKVQEEFFNTFNALTKDGKQIVMTSDRYPTDIPDLLTRLTSRFEAGITQDIQK 120 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSF 384 D R +IL+N + ++ D LNI EVL + + T+ R L+GAF++ R+ Sbjct: 121 PDLPTRVAILRN---LQERND--LNIPNEVLELIGEKIDTNVRSLEGAFHKFEAKVRYMN 175 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 P T E A +LS L N + KK+ +E IQ VA ++ S D+ +RR +V R + Sbjct: 176 KPA-TIETAQSILSEL-NIDQGKKITVERIQETVANYFMQSVTDMQGSRRQADLVNARHI 233 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 A+YL++ MT +S P+IGR FG +DHTTV+ Sbjct: 234 AIYLTRTMTNKSLPDIGRSFGGQDHTTVM 262 >gi|150019914|ref|YP_001305268.1| chromosomal replication initiator protein DnaA [Thermosipho melanesiensis BI429] gi|166215366|sp|A6LIY2|DNAA_THEM4 RecName: Full=Chromosomal replication initiator protein DnaA gi|149792435|gb|ABR29883.1| chromosomal replication initiator protein DnaA [Thermosipho melanesiensis BI429] Length = 437 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/461 (25%), Positives = 234/461 (50%), Gaps = 41/461 (8%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + + LK ++ + +WF + N V V F+K ++ ++ + I+K+ ++ Sbjct: 5 IIASLKERISRQNWENWFLDFNIRELKDNHVVFEVGNFFIKERLEKKFNKIISKVVKDIL 64 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 + EI + + P T + P+I + P+ +PL+ + Sbjct: 65 GKDATYEITFKEI------------------PYETKVESGPLIKKR----PLLITPLNPK 102 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F + G N+ A ++ + G+ NP+F+++ VGLGKTHL QA+ N + Sbjct: 103 YTFENLVVGEFNKFAYNVFLEASK--NPGF----YNPIFLYSGVGLGKTHLAQALGNYLL 156 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQG-KLIQHE 279 + P+++V YLT+E FM SAI++ ++ R D+L+IDD+QFL G K Q E Sbjct: 157 ETDPDMKVAYLTSEEFMNEMFSAIKNGNIDEFREKYRKKADILIIDDIQFLIGIKSAQTE 216 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 H N++ ++ KQ++ +DR P EL+ R+ SR Q G+ V + E F I K Sbjct: 217 LFHTFNTIHEAGKQIIICSDRTPQELKDFHSRMISRFQMGLLVKIEKPSSEDLFKIGK-- 274 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 IS+ ++ + I++E++ ++++ + + R + GA +L+ + L IA+ +L+ Sbjct: 275 -KISEMKN--VEIDDEIIKYISK-IYDNPRLIHGAILRLIAYRNLYGTLNLSIAESILT- 329 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 N + K E + ++++ ++ S +D+ S++R + + R++ MY + S + Sbjct: 330 --NVSKPPKSFEEKLLEILSEIFDCSPDDITSSKRTKNISYARKIGMYFAVKKLNLSTRD 387 Query: 460 IGRRFGDRDHTTVLHAVRKVEKML-ETDITLKKEVELLKRL 499 +G F + H++V+ V++VEK+L E ++ LK ++ + ++ Sbjct: 388 VGTIF-KKSHSSVVQNVKQVEKLLKEGNVILKNYLKQIDKM 427 >gi|94263748|ref|ZP_01287555.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] gi|93455848|gb|EAT06011.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] Length = 447 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 128/467 (27%), Positives = 222/467 (47%), Gaps = 32/467 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L ++ V+ W + L + L+ P F W+ +L I Sbjct: 2 IWPEVRKILHQRLPESVFNLWIEPLSCLQEGDGRLELAGPDRFFCNWVAENHLADIQAAL 61 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 E + V V A S E+ +L + N ++ +T+ P Sbjct: 62 AEVGRQGLEVRFQVDGQAGASDEEAGKGAEQLRLPRMPRNHNRI------RTLHP----- 110 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP-LFIHASVGLGKTHLLQAI 216 R+ F F+ G SN +A +A ++IA T + P +FI+A GLGK+HL A+ Sbjct: 111 ---RYTFDEFMVGDSNALAYSACEAIA------TGTTQAEPCVFINAGTGLGKSHLTHAV 161 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-RNIDLLLIDDMQFLQGK- 274 A+ P R+ LT++ IR+N K+ R D+LL++D+Q L G+ Sbjct: 162 AHHLYNNAPGTRLCCLTSQQLTAELVHHIRNNSMEQFKEKFQRRCDVLLVEDVQTLSGRS 221 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q E ++SLLDS ++V+ R P E+ LD +RSRL G+ + D + R Sbjct: 222 KTQVELAEAVDSLLDSGRRVLFTGSRSPREIPDLDEGVRSRLASGLVTTINPPDIKTRRL 281 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-TAEIA 393 I++ + KL ++EE++ ++A V R+++ A L + + + T E+ Sbjct: 282 IIRRKAVFH-----KLALDEEMVAYIAEKVRGDIRKVESAMVGLKAKANLRRVAPTMEMV 336 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E+++ + ET + E I+ VA + +S +L S R + + PRQV+MYL++ +T Sbjct: 337 REVVATVAGE-ETPGLNSEAIRDFVAAQFKLSVEELRSKSRKKEITFPRQVSMYLARKLT 395 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRL 499 IG+ F DRDH+TV+H++R + + + + +++ ++E L KRL Sbjct: 396 DEGLAGIGKAF-DRDHSTVVHSIRVINEAVARNGSVRGQIEHLTKRL 441 >gi|217076354|ref|YP_002334070.1| chromosomal replication initiator protein DnaA [Thermosipho africanus TCF52B] gi|226735858|sp|B7IF65|DNAA_THEAB RecName: Full=Chromosomal replication initiator protein DnaA gi|217036207|gb|ACJ74729.1| chromosomal replication initiator protein DnaA [Thermosipho africanus TCF52B] Length = 438 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 121/450 (26%), Positives = 225/450 (50%), Gaps = 40/450 (8%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 S LK ++ + SWF + V V F+K ++ ++ + I+K+ +E + Sbjct: 7 SALKEKISRQNWESWFLDFNVKKIEDKHVVFEVGNIFIKDRLEQKFSKIISKVVKESLGK 66 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 EI+ + + + N K P++ + P+ +PL+ ++ Sbjct: 67 DATFEIVYKEIDITQ-----------------ENEEKGPLVRKR----PLLITPLNPKYT 105 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G+ NR A ++ GY NP+F+++ VGLGKTHL QA+ N ++ Sbjct: 106 FENFVVGNFNRFAYNVFLEASK--KPGY----YNPIFLYSGVGLGKTHLAQALGNFLLEN 159 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQG-KLIQHEFC 281 P+L+V YLT+E FM AI++ ++ R D+L+IDD+QFL G K Q E Sbjct: 160 DPDLKVAYLTSEDFMNEMFYAIKNGTTEEFREKYRKKADILIIDDIQFLIGIKSAQVELF 219 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N++ ++ KQ++ +DR P EL+ R+ SR Q G+ V + E F I K Sbjct: 220 HTFNAIHEAGKQIIICSDRTPQELKDFHSRMISRFQMGLLVKIENPTKEDLFKIGK---K 276 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV 401 IS+ + + IN+E++ +++ ++ + R + GA +L+ + L IA +L+ Sbjct: 277 ISKLKG--VEINDEIIDYIS-SIYDNPRLIHGAILKLIAYKNLYGSLNLSIAQSILT--- 330 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 N + K E + +++ + S ++LS++R + + R+V MY + S ++G Sbjct: 331 NPSKPPKALEEKLIEILSDIFECSPEEILSSKRTKNISYARKVGMYYAAKKLNLSTRDVG 390 Query: 462 RRFGDRDHTTVLHAVRKVEKML-ETDITLK 490 + F ++ H++V+ + +VEK++ E +I +K Sbjct: 391 KVF-NKSHSSVVQNISQVEKLIKEGNIIIK 419 >gi|218283256|ref|ZP_03489317.1| hypothetical protein EUBIFOR_01906 [Eubacterium biforme DSM 3989] gi|218216011|gb|EEC89549.1| hypothetical protein EUBIFOR_01906 [Eubacterium biforme DSM 3989] Length = 452 Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 112/459 (24%), Positives = 218/459 (47%), Gaps = 38/459 (8%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 N + SW + + NI +++ + + +K + +LF+ S + G Sbjct: 18 NYFDTHTFNSWISKTTLFKIEDNIAYVAYRSTITFSILKK---QKEKELFESTLSEVWGD 74 Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTF 167 + ++ + +EK P + KQ + + + + + F F Sbjct: 75 TLTIQYIHQREMEKMM------------------PEEVVKQRTNVLLENKFNPSYTFENF 116 Query: 168 IEGSSNRVALTAAQSIA-EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 +EG+SN A A + + SH + NPL ++ + GLGKTHLL A+ N K P Sbjct: 117 VEGNSNAEAYAACLACCTQTTSHLF-----NPLMLYGNSGLGKTHLLHAMGNYLAKEHPE 171 Query: 227 LRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +V+Y+ + + A++ N +K+ L + D LIDD+Q LQ E F Sbjct: 172 CKVIYMYSGDLVSLLIEAMKTKNVHGNTVERVKEQLLDCDYFLIDDIQNLQQHSSSQEIF 231 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N L+ Q++ +D PSE+ L R+ SR G+++ + ++E +ILK ++ Sbjct: 232 FTVYNQLIQKNTQIIITSDMHPSEISGLQSRLISRFVSGLTISISKPEFETSKAILKKKI 291 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP-ILTAEIADELLS 398 + + +N++E+V+ ++A + R L+G N+L+F + F P ++ + A ++L Sbjct: 292 ---EGREEGVNMSEDVIDYLAGKYSNDVRNLEGTLNRLIFNATLFNPDVIDMDFARKVLI 348 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ ++ I+ I++ V + Y +S DL R + + R + +YLS+ + +S+ Sbjct: 349 KEPIVSQSDELTIKKIKKAVTRFYGLSYKDLEGKCRQKFIANARHICVYLSRDLLHKSYV 408 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 IG+ G RDHTT+ + + +K+++ D K VE ++ Sbjct: 409 SIGQELGGRDHTTISSSYERAKKLIQKDEAFKTAVEKIR 447 >gi|296132602|ref|YP_003639849.1| chromosomal replication initiator protein DnaA [Thermincola sp. JR] gi|296031180|gb|ADG81948.1| chromosomal replication initiator protein DnaA [Thermincola potens JR] Length = 339 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 110/375 (29%), Positives = 188/375 (50%), Gaps = 44/375 (11%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 L ++ ++ S +K QV + +W + + + ++ + + VP F + W++ RY Sbjct: 2 LSIDLSELWQNALSIMKKQVSKPSFETWLKSTEPVDINNHTMTIRVPNAFARDWLETRYY 61 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I +E + VE+ S P + S I +P Sbjct: 62 NLIKNALKEAANL--KVEL---SFIFPETGEQMSESEINSSAP----------------- 99 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ R+ F TF+ G++NR+A AA ++A+ + Y NPLFI VGLGKT Sbjct: 100 ----PTRLNPRYTFDTFVVGNNNRLAHAAALAVAKSPAKVY-----NPLFICGGVGLGKT 150 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI N +++ P RV Y++AE F +AIRD+ + RN+D+L+IDD+ + Sbjct: 151 HLIQAIGNFALENNPGARVAYISAEAFTMELINAIRDDRTAEFRSKYRNMDILIIDDIHY 210 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF + N+L ++ KQ++ A + P +L +LD I SR +GG+ + D Sbjct: 211 LAGKERTQEEFFYTFNALYEANKQIIVAGKQAPKQLPALDESICSRFEGGLIADIQPPDL 270 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-- 387 E R IL+ R E +++ +V+ ++A ++ REL+GA +++ FA + Sbjct: 271 ETRTEILRKR-----AEAENVHVPGDVITYIADQFHSNTRELEGALTRIIL---FASVKQ 322 Query: 388 --LTAEIADELLSHL 400 +T ++ADE L + Sbjct: 323 SQITLDLADEALKGM 337 >gi|53804309|ref|YP_114074.1| DnaA domain-containing protein [Methylococcus capsulatus str. Bath] gi|53758070|gb|AAU92361.1| DnaA domain protein [Methylococcus capsulatus str. Bath] Length = 334 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 171/332 (51%), Gaps = 18/332 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F FS FIE SN A TAA +A + G +V P+ I + GLGKTHLLQAI N + Sbjct: 10 FRFSNFIEARSNNKAGTAALRVAR--NLGPASV---PMVIWGAAGLGKTHLLQAIGNERL 64 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEF 280 + P R+VY + + F A+A++ + + DLLL DD+Q L GK+ Q E Sbjct: 65 RLNPAARIVYQSGDGFEADLAAALQQGAVAGFRSRYESADLLLFDDVQRLAGKVRAQAEL 124 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 L ++LL+S + +V A DR P ++ + +++RL G+SV + D E R ++L Sbjct: 125 VWLFDALLESLRSIVLAGDRSPYDMTGVAGDLKTRLNLGLSVSIEPPDLETRAAVL---- 180 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 + + +++ EV + R + T EL+ A +L + PI T E A L H+ Sbjct: 181 -MQKARTWGIDLPPEVAFFLGRRIRTDLAELERALLRLA-ACARQPI-TLETAAWELRHV 237 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + E + + +E +Q VA H+ I+ DLLSNR P Q+AM L +T E+ Sbjct: 238 IALPE-RMITVERVQAAVADHFGIAPGDLLSNRH----ALPLQLAMALCLELTDHGLEEV 292 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 G RFG RD VL A R+ + ETD + + Sbjct: 293 GPRFGGRDAAAVLLACREAQTARETDARFRDD 324 >gi|122912897|gb|ABM68012.1| DnaA [Epulopiscium sp. 'N.t. morphotype B'] Length = 232 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 146/237 (61%), Gaps = 8/237 (3%) Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+Q+IA+ ++K PNL+V+Y + E F ++IRD+ ++ RNID+LLID Sbjct: 1 LGKTHLMQSIAHFTLKHHPNLKVLYTSTEKFTNELINSIRDDQNNAFRNKYRNIDILLID 60 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N+L ++ KQ++ ++DR P E+E L+ R+RSR + G+ L Sbjct: 61 DIQFIAGKERTQEEFFHTFNTLYEANKQIIISSDRTPKEIEFLESRLRSRFEWGLIADLQ 120 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E R +ILK + E + I+ VL +A T+ ++ REL+GA N+++ S + Sbjct: 121 PPDLETRIAILKKK-----AEMENITIDSNVLQFIAETIISNIRELEGALNRIIAFSSLS 175 Query: 386 -PILTAEIADELLSHLVNTGETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVR 440 + E+ +E L + + E+ + IQ +VA YNI+ ++LLS++RVRT+ R Sbjct: 176 NETINLELTEEALKDTILSKESISIITPSYIQSIVAMTYNITISELLSSKRVRTISR 232 >gi|1079499|gb|AAC43711.1| DnaA protein [Mycobacterium smegmatis] gi|1585267|prf||2124373B dnaA gene Length = 495 Score = 160 bits (406), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 97/288 (33%), Positives = 167/288 (57%), Gaps = 15/288 (5%) Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 S + R P+FI VG GKTHLL A N + + P +RV Y + E F F +++RD Sbjct: 152 SRSPSAARPTPVFI-CRVGSGKTHLLHAHGNYAQRLFPGMRVKYASTEEFTNDFINSLRD 210 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 + + K S R+ID+LL+DD+QF++GK IQ EF H N+L +S KQ+V ++DRPP +L Sbjct: 211 DRKASFKRSYRDIDILLVDDIQFIEGKEGIQEEFFHTFNTLHNSNKQIVISSDRPPKQLA 270 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 +L+ R R+R + G+ + + E R +IL+ + + +L++ ++VL +A ++ Sbjct: 271 TLEDRFRTRFEWGLITDVQPPELETRIAILRKKAQMD-----RLDVPDDVLELIASSIER 325 Query: 367 SGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + REL+GA ++ +FA + + +A+ +L L+ T ++ I + A+++ Sbjct: 326 NIRELEGALIRVT---AFASLNKTRIDRSLAEVVLRDLIADATTMQISTAAIMAVTAEYF 382 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 + +L + R + + RQ+AMY+ + +T S P+IG+ FG RDHT Sbjct: 383 ETTVEELRGPGKTRALAQSRQIAMYMCRELTDLSLPKIGQAFG-RDHT 429 >gi|154148526|ref|YP_001405623.1| chromosomal replication initiator protein DnaA [Campylobacter hominis ATCC BAA-381] gi|153804535|gb|ABS51542.1| chromosomal replication initiator protein DnaA [Campylobacter hominis ATCC BAA-381] Length = 437 Score = 160 bits (405), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 131/463 (28%), Positives = 231/463 (49%), Gaps = 49/463 (10%) Query: 46 LKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 LKNQ+ + + ++ ++LKF+ S I++++ ++ +I +Y + I +++ Sbjct: 12 LKNQISTEEWENYIKKLKFNDKASKPDYIIYIA-SNPYIAKFINTKYSKKIADIYE---- 66 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 VE V+ V + S ++ K + N KS I+ G F Sbjct: 67 ----VETGVKPVVIIS---DGKEKNLKKDQNKSINKFKSTILSG--------------SF 105 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F FI G SNR A T A+++AE R NPLFI+ + GLGKTHLLQ+I N IK Sbjct: 106 SFENFIVGDSNRFAYTCAKAVAENPGE-----RYNPLFIYGNSGLGKTHLLQSIGNYCIK 160 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 V+ +T+E F I N K+ R DLLLIDD+Q L K E Sbjct: 161 DGK--FVICVTSEQFANELKFHIETNSTDKFKEKYRTCDLLLIDDIQLLSTRKAAIDELF 218 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L + Q+V D+PP L+ + R+ SR + G+ + D + IL + Sbjct: 219 HTFNELKNKNCQIVITNDKPPQLLKDFESRLVSRFESGLVANINPPDLNTKIGILTKKAG 278 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA-DELLSHL 400 ++ L +N++V+ ++A + + RE++G Q+ ++ ++ EI+ D + ++L Sbjct: 279 LNG-----LTLNKDVIEYIAANLGDNVREMEGILTQI---RAYQSLINTEISLDFVKANL 330 Query: 401 VNT---GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 ++ ++ + E+I +M+ +N+ +++ R + V + R+VA+Y+ K +T + Sbjct: 331 KDSFYKNNSENVGFEEILQMICSEFNVKPSEIRGKNRTKNVAKARRVAIYICKNLTQNTM 390 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+I FG +DH+ V H +RK+++++ D LK +VE L+ I Sbjct: 391 PKIASFFGLKDHSAVSHNIRKLKELMTDDNYLKLKVEELENKI 433 >gi|224368958|ref|YP_002603122.1| DnaA [Desulfobacterium autotrophicum HRM2] gi|223691675|gb|ACN14958.1| DnaA [Desulfobacterium autotrophicum HRM2] Length = 469 Score = 159 bits (402), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 125/481 (25%), Positives = 237/481 (49%), Gaps = 35/481 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E + V S +K+ + Y W Q + + + N V LS P +F K IK YL I Sbjct: 2 EQYWERVKSEMKHSLPDHSYRMWIQPMGYQASGSNEVTLSCPNSFSKKRIKENYLAGIEA 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII----------- 144 F + ++++V + V+K AS + P+N ++P++ Sbjct: 62 QFTKLGLGQIKIDLMVET---KGVKKKASKAAT---QPVNGGECETPLLSFPRRPSRPMQ 115 Query: 145 --LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 L I G L + F F+ G ++ A +AA S+A+ S V +++ Sbjct: 116 MALPGLNIRSDSGRMLKKGYTFDRFVVGDNSDFAYSAALSLAQTSS-----VNNGAIYLL 170 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NID 261 + GLGK+HL QA+ + I + + +V Y+TAE F S+I++N K+ R D Sbjct: 171 SDTGLGKSHLSQAVGHHVISQGFSDKVYYVTAEDFTNEMVSSIKNNTINGFKEKYRRKCD 230 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L+++D+ FL GK Q E L+ L+D+ K+++ + P ++ ++ +++SRL G+ Sbjct: 231 VLILEDVHFLSGKDATQKELAMTLDYLMDAEKKIIFSGCYLPDDIPKMNEQLKSRLTLGM 290 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + +++ R ILKN+ K D I +V ++A+ + + R+L+ + Sbjct: 291 VTKIDPPNFKTRVKILKNK----SKYDG-FVIPNDVTEYLAQELCDNVRQLESGLMGVAR 345 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + + + +A +LS + + K + ++ I+++V +++S +L+S R +TVV Sbjct: 346 KSALLGEKIDINLARGVLSTI--SRNKKNITVDVIKKLVCSEFSLSEKELVSTSRKQTVV 403 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 +PRQ+A++L++ T + IGR F +R H T ++++ VEK L+ +++ L R Sbjct: 404 KPRQMAIFLARKYTDQPLKTIGRSF-NRYHATAIYSINAVEKKLKQQGGFTEQMNYLCRK 462 Query: 500 I 500 I Sbjct: 463 I 463 >gi|50364816|ref|YP_053241.1| chromosomal replication initiator protein [Mesoplasma florum L1] gi|61212578|sp|Q6F2A9|DNAA_MESFL RecName: Full=Chromosomal replication initiator protein DnaA gi|50363372|gb|AAT75357.1| chromosomal replication initiator protein [Mesoplasma florum L1] Length = 443 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/351 (31%), Positives = 189/351 (53%), Gaps = 22/351 (6%) Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 ++ F FI GSSN+ A AA+++ V + G + NPLFI+ GLGKTHLLQAI N Sbjct: 103 ENALTFENFIVGSSNKQANLAAKNV--VANPGMS---FNPLFIYGDSGLGKTHLLQAIKN 157 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALN-LKDSLRNIDLLLIDDMQFLQGKL 275 + +V+YLT+E F R +A+ D + LK + + + ++DD+QFL K Sbjct: 158 QA--ELNGKKVLYLTSEEFTKRIVNALNKGDLSEIEELKTEINSNEFFILDDVQFLSKKD 215 Query: 276 IQHEFC-HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 +EF +++N+ ++ KQ+V ++D+ P L D R+ +R G+S P+ D Sbjct: 216 KTNEFFFNIINNFTENGKQLVFSSDKTPELLNGFDKRMITRFNSGLSTPINALDIPTAKL 275 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF---RHSFAPILTAE 391 I++ + +K+ K I E+ ++++A+ + R++ G N+L+F ++ I+ E Sbjct: 276 IIEAEI---KKQGLKQKIKEDAVVYLAQNFSDDVRKIKGLVNRLLFFGIQNDLGHIIDLE 332 Query: 392 IADELLSHL--VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +L N G + ++ I+ +VAK Y+++ + R + R ++MY + Sbjct: 333 DVIDLFKDTPSANLG---LLNVKKIKEVVAKKYDVTIKAIDGKARTTAIKNARHLSMYFA 389 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 KI+ + +IG FG RDH+TVL A+ ++EK++ + KK VE LK I Sbjct: 390 KIILNHTSTQIGAEFGGRDHSTVLSAISRIEKLIYKEKEFKKIVESLKNEI 440 >gi|57233687|ref|YP_180756.1| chromosomal replication initiator protein DnaA [Dehalococcoides ethenogenes 195] gi|57224135|gb|AAW39192.1| chromosomal replication initiator protein DnaA [Dehalococcoides ethenogenes 195] Length = 445 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 127/387 (32%), Positives = 205/387 (52%), Gaps = 37/387 (9%) Query: 137 NISKSPIILGKQTI--------SPVFG-----SPLDSRFVFSTFIEGSSNRVALTAAQSI 183 NI+ SP+ LG Q + +P SP + R+ F +FI GS NR+A A S+ Sbjct: 70 NITHSPVELGFQLVQSAQVQAAAPQTAREKTVSPFNPRYTFESFIVGSCNRLAHAA--SL 127 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN-ASIKRQPNLRVVYLTAEYFMWRFA 242 A + G + NPL+I+A+ GLGKTHLLQAI + A++ R+ + +Y++ E F F Sbjct: 128 AATQNPGKS---YNPLYIYAAAGLGKTHLLQAIGHLANLNRR---KALYVSGEQFTTDFI 181 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFC--HLLNSLLDSAKQVVAAADR 300 S+IR+ + R++DLLL+DD+QF+ GK Q E C H N L +S +Q+V +AD Sbjct: 182 SSIRNGQTEEFRARYRDVDLLLLDDVQFIGGKE-QTEECLFHTFNDLHNSNRQIVISADS 240 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PP L L R+RSR + G+++ + D + R +L+ + S E +N + L ++ Sbjct: 241 PPKSLPQLAERLRSRFEWGLTIEIEPPDEKTRLELLQLKAEQSGTE-----LNMDTLEYL 295 Query: 361 ARTVTTSGRELDGAFNQLV-----FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQ 415 A+ V + REL+G+ N+++ R + P L A ++ S V E +R +I Sbjct: 296 AQEVKHNIRELEGSLNRVLAYARLLRATITPDLAARALSDIGSRPVR--ENSPLRPGNII 353 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 V++ + I +LL R + RQ AM++ K S EIG+ G R +TV HA Sbjct: 354 SAVSQVFQIPATELLGAARDKDTALARQFAMFMLKQQNSASLVEIGQSLGGRSASTVSHA 413 Query: 476 VRKVEKMLETDITLKKEVELLKRLISE 502 K++ LE L+ ++ ++ +S+ Sbjct: 414 CDKIQLELENSAFLRLKMSEVQNQLSQ 440 >gi|109946641|ref|YP_663869.1| chromosomal replication initiation protein [Helicobacter acinonychis str. Sheeba] gi|122973477|sp|Q17ZQ6|DNAA_HELAH RecName: Full=Chromosomal replication initiator protein DnaA gi|109713862|emb|CAJ98870.1| chromosomal replication initiator protein [Helicobacter acinonychis str. Sheeba] Length = 449 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/481 (25%), Positives = 234/481 (48%), Gaps = 56/481 (11%) Query: 23 NVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNF 80 N D++KR LE+ K QV P Y ++ +LK++ + +I P Sbjct: 4 NNDIEKRILEL------------AKQQVSPIEYENYLSQLKYNPNASKSDIAFFYAPNMV 51 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 L + I +Y + ++ + + L SV + +E AS ++ S IN +K Sbjct: 52 LCSTITAKYSALLKEILSQNKVGMH----LAHSVDV-RIE-VASKVHVSDHSNINYKATK 105 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 S I + F F+ GS N A+ IA+ D+ Y NP+ Sbjct: 106 SSI---------------KDSYTFENFVVGSCNNTVYEIAKKIAQSDTPPY-----NPVL 145 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 + GLGKTH+L AI N ++++ +VV +T+E F+ F + + + K+ R+ Sbjct: 146 FYGGTGLGKTHILNAIGNHALEKHK--KVVLVTSEDFLRDFLKHLNNRSMDSFKEKYRHC 203 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D L+DD QFLQGK ++ EF H N L + +Q+V +DR P + L+ R++SR + G Sbjct: 204 DFFLLDDAQFLQGKPQLEEEFFHTFNELHANNRQIVLISDRSPKNIAGLEDRLKSRFEWG 263 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++ + D E + SI+K + ++ K+ + EEV+ ++A+ ++ + R+++GA ++ Sbjct: 264 ITAKIMPPDLETKLSIVKQKCQLN-----KIILPEEVMEYIAQHISDNIRQMEGAIIKIS 318 Query: 380 FRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + API +A +L L + + +E+I VA+ N+ +++ + R + Sbjct: 319 VNANLMNAPI-DLNLAKTVLEDL-QKDQAEGSSLENILLAVAQSLNLKSSEIKVSSRQKN 376 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD----ITLKKEV 493 V R++ +Y +++ TP + + +DH+++ ++KMLE ++LK+E+ Sbjct: 377 VALARKLVVYFARLYTPNPTLSLAQFLDLKDHSSISKMYSSIKKMLEEKNPFVLSLKEEI 436 Query: 494 E 494 + Sbjct: 437 K 437 >gi|325678552|ref|ZP_08158163.1| chromosomal replication initiator protein DnaA [Ruminococcus albus 8] gi|324109771|gb|EGC03976.1| chromosomal replication initiator protein DnaA [Ruminococcus albus 8] Length = 465 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 117/453 (25%), Positives = 217/453 (47%), Gaps = 43/453 (9%) Query: 55 YASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 Y W Q LK + + + L +F+K+ N + +T+TK F+E + G + V Sbjct: 34 YRMWIQPLKPYKFDAENGVAFLLAKNDFIKSTATNTFGKTLTKAFEE----VMGFPVKVE 89 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 + + P + F F F++GSS Sbjct: 90 IMISGDDSEEEKEELSLGEQPAD------------------FSDEAKDSLTFENFVKGSS 131 Query: 173 NRVALTAAQSIAEV---DSHGYTTVR----LNPLFIHASVGLGKTHLLQAIANASIKRQP 225 N +A +++AE D H + NPL I+ GLGKTHL++AI + K P Sbjct: 132 NDLAYAFCKAVAEKYDKDKHSTGDIDPNKVFNPLIIYGDSGLGKTHLMKAIEHEVNKNHP 191 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 ++++Y T E F+ A+ ++ + RN D+LL+DD+Q + GK +Q EF H Sbjct: 192 EMKIIYTTGEAFINELVRALELKETVDFHEKYRNADILLVDDIQIIAGKERMQDEFFHTF 251 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N L ++ KQ+V +D PS + L RI +RL GV + D+E R +I+ NR A Sbjct: 252 NDLYNAGKQIVLTSDVLPSNITKLQDRIATRLSLGVQADVQPPDFETRMAII-NRKA--- 307 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ---LVFRHSFAPILTAEIADELLSHLV 401 E L +++ V+ +A + T+ R+L+G + L + +P + +A ++ ++ Sbjct: 308 -ELLGLKLSDNVVRLIAEKLKTNIRQLEGTVKKIKALTVYTNESP--SVSMAQRVIKEII 364 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 + + ++ ++ I VA ++++ D+ SN R + R++A+Y+ K + ++ +IG Sbjct: 365 ISNQPSEITVDRIIGEVANAFDVTPEDIKSNHRHSNISIARKIAIYVLKEVKGMTYTQIG 424 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 +++H+T+ R V K+L+++ +K+ V+ Sbjct: 425 DAL-NKNHSTMTIHYRDVAKLLKSNKEMKETVD 456 >gi|293400058|ref|ZP_06644204.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306458|gb|EFE47701.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 451 Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 102/345 (29%), Positives = 188/345 (54%), Gaps = 18/345 (5%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F + + F +F+ G +NR A AA S Y NPLFI + GLGKTHL Sbjct: 107 MFEDKIKKEYTFDSFVVGKNNREAYAAAMSACH-----YPGKFNNPLFIFGNSGLGKTHL 161 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +P+ +V+Y+ +E F+ ++++ +K+ + ++D LLIDD+Q L+ Sbjct: 162 LHAIGNFVKENKPDEKVLYIYSEDFVTLLIESMKNKTVEEVKEMICSVDYLLIDDIQRLK 221 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q F +L N L+ KQ+V +D P+EL+ ++ R+ SR G+SV +G ++E Sbjct: 222 QSTSQEIFFNLYNKLVSDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETA 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +IL+ ++ ++E + I +EVL ++A ++ R+L+G+ N+L F+ A + E Sbjct: 282 KAILQKKMEGRKEE---IMIEDEVLDYLATRFSSDVRKLEGSLNELFFK---AILYNPEK 335 Query: 393 ADELLSHLVNTGETKKMRIED------IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 D + + E + ++D I++ V ++Y +++ + S R + + R +A+ Sbjct: 336 IDLAFTQEI-FKENPVIAVDDELTPKKIKKAVCEYYGLTKTQIESKSRTKNIANARHIAV 394 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 YL + F +IG FG+RDH+T++ + K+ K+L+ T ++ Sbjct: 395 YLCRKHLEMPFVKIGFEFGNRDHSTIMASYEKMVKLLKEKETFQQ 439 >gi|225619164|ref|YP_002720390.1| chromosomal replication initiation protein [Brachyspira hyodysenteriae WA1] gi|225213983|gb|ACN82717.1| chromosomal replication initiation protein [Brachyspira hyodysenteriae WA1] Length = 461 Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 120/435 (27%), Positives = 216/435 (49%), Gaps = 30/435 (6%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV------RSVALPSVEKTA 123 N + +F A IK +LE I F++ +++ V + + + E++ Sbjct: 38 NKADIVCSGDFTAAHIKKDFLERIKDFFEDRLGHNIDIDVKVDAELVNKYLHIEEAEESI 97 Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSI 183 + + SK K S L+ F F FI+G++NR AA+ + Sbjct: 98 DNNKENNSNKNTLEASKKENFYSK--------SNLNDYFRFDNFIQGNNNRYVFEAAKYV 149 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 + Y NPL+I+ SVG+GKTHLLQAI N+ ++ PN +V+Y+ F + S Sbjct: 150 SSNPGKEY-----NPLYIYGSVGIGKTHLLQAIGNSYMQNNPNAKVLYIDGSGFRDEYVS 204 Query: 244 AIRDNCALNLKDSLRNIDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 ++ K +++D+LL+DD+Q L+ + E + +L +++KQ+V +D+PP Sbjct: 205 GLQSKKPEIFKRRYKSLDMLLLDDLQLLESAQETSKELFEIFQALDNASKQMVFVSDKPP 264 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 EL +++ R+++R + + + + YE R +I++ +L D +I+EEV+ ++A Sbjct: 265 KELRNIEARLKNRFEKSLILSIEPPQYETRLAIIERKLF-----DLHTSIDEEVMKYMAE 319 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPIL----TAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +TT R+++GA + I E D + N + K I++I+++V Sbjct: 320 NITTDVRKIEGAIRAYLSIRDLMKITPNIEQCEKLDIFKDYFTNKPKLKNATIKEIKKIV 379 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A +Y I + S R + + + R VA+YL+ + +S EIG F +RDH +V+HA K Sbjct: 380 ADYYGIEISSFESKDRTKFISKARHVAIYLACEYSKKSVTEIGLDF-NRDHASVIHARDK 438 Query: 479 VEKMLETDITLKKEV 493 V+ L+T L E+ Sbjct: 439 VKDELKTGSHLYSEI 453 >gi|332701174|ref|ZP_08421262.1| Chromosomal replication initiator protein dnaA [Desulfovibrio africanus str. Walvis Bay] gi|332551323|gb|EGJ48367.1| Chromosomal replication initiator protein dnaA [Desulfovibrio africanus str. Walvis Bay] Length = 454 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 125/449 (27%), Positives = 218/449 (48%), Gaps = 42/449 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHN-IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 L+ ++ P+ + W + L H+ L+N ++ L+ P F+ AW++++ I++ + Sbjct: 12 LEKELNPNQFTLWIKPL--HASLNNNVLELAAPNEFVAAWVRDKLTTHISQAALQVLGSP 69 Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS---- 160 V + PS +TA+ PS ++S + + + + +PL S Sbjct: 70 STVTVRSTPKPTPSAPETATKPSS----------AESTVTVKAKHLGLPLTTPLQSTQCC 119 Query: 161 --RFVFSTFIEGSSNRVALTAAQSIAEVD-SHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 R F F+ G SN +A AAQ + D S G PLFI +S GLGKTHL+QAI Sbjct: 120 NWRHSFDDFVVGPSNDLAYAAAQGVVRNDFSPG-------PLFISSSAGLGKTHLIQAIG 172 Query: 218 NASIK--RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK 274 +A+ R +L + YLTAE F + A+ K R ID+LL++D+ FLQGK Sbjct: 173 HAAQDRTRSKSLTLRYLTAEEFATKMLMALNAKDMSRFKTQFREGIDILLLEDIHFLQGK 232 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 + Q E + +L + +VV + P EL ++D + SR G + + D++MR Sbjct: 233 AMFQDELLSTIKALQERGSRVVFTSSFLPKELSNVDTHLVSRFCSGFLTVIDMPDFDMRR 292 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA 393 I++++ ++N+ ++V +A ++T R+L+ LV + A +L I+ Sbjct: 293 RIVQHK-----SRQLQVNVPDDVAELLAESITCDIRQLESCLQNLVLK---ARLLNERIS 344 Query: 394 DELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 ++ ++ + M +E I MV + + +S L S R R +V R A +L++ Sbjct: 345 LDMARDVLGNYASQNSGMALERIVEMVCRTFILSPTQLASKSRKRNIVLARNTAFFLARK 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 T S +I RF +R H+TV+ + +E Sbjct: 405 HTQLSLKDIADRF-NRTHSTVIKGITSLE 432 >gi|309774990|ref|ZP_07670006.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae bacterium 3_1_53] gi|308917244|gb|EFP62968.1| DNA replication initiator protein, ATPase [Erysipelotrichaceae bacterium 3_1_53] Length = 452 Score = 157 bits (396), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 103/347 (29%), Positives = 184/347 (53%), Gaps = 17/347 (4%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F + + F +F+ G +NR A AA S+ Y NPLFI + GLGKTHL Sbjct: 107 LFEDKVKKEYTFDSFVVGKNNREAHAAALSVC-----YYPGKFNNPLFIFGNSGLGKTHL 161 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +P +V+Y+ +E F+ A+++ ++K+ + ++D LLIDD+Q L+ Sbjct: 162 LHAIGNYVKANRPEEKVLYIYSEDFVTLLIEAMKNKTVEDVKEMICSVDYLLIDDIQRLK 221 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q F ++ N L+ KQ+V +D P+EL+ ++ R+ SR G+SV +G ++E Sbjct: 222 QSTSQEIFFNMYNKLISDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETA 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +IL+ ++ + ++ I++EVL +A + R+L+G N+L F+ A + E Sbjct: 282 KAILQKKM---EGRSDEIMIDDEVLDFLATRFASDVRKLEGTLNELFFK---AILYNPER 335 Query: 393 ADELLSHLVNTGETKKMRIED------IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 D + + ++ ED I+ V ++Y ++R + S R + + R +A+ Sbjct: 336 IDITFAKEIFKENPIVVKQEDELTPKRIKNAVCEYYGLTRTQIESKSRTKNIANARHIAI 395 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 YL + F +IG FG+RDH+T++ + K+ K+L+ T ++ V Sbjct: 396 YLCRTHLEMPFAKIGFEFGNRDHSTIMSSYEKMMKLLKEKETFQQAV 442 >gi|270307452|ref|YP_003329510.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. VS] gi|270153344|gb|ACZ61182.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. VS] Length = 444 Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 196/375 (52%), Gaps = 37/375 (9%) Query: 137 NISKSPIILGKQTIS----PVFG---------SPLDSRFVFSTFIEGSSNRVALTAAQSI 183 NI+ SP+ LG Q + P SP + R+ F +FI GS NR+A A+ + Sbjct: 70 NITHSPVELGFQLVQSAQVPAAAPQTAREKTVSPFNPRYTFESFIVGSCNRLAHAASLAA 129 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN-ASIKRQPNLRVVYLTAEYFMWRFA 242 A+ Y NPL+I+A GLGKTHLLQAI + A++ R+ + +Y++ E F F Sbjct: 130 AQNPGKSY-----NPLYIYADAGLGKTHLLQAIGHLANLNRR---KALYVSGEQFTTDFI 181 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFC--HLLNSLLDSAKQVVAAADR 300 S+IR+ + R++DLLL+DD+QF+ GK Q E C H N L +S +Q+V +AD Sbjct: 182 SSIRNGQTEEFRARYRDVDLLLLDDVQFIGGKE-QTEECLFHTFNDLHNSNRQIVISADS 240 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PP L L R+RSR + G+++ + D + RF +L+ + S E +N + L ++ Sbjct: 241 PPKSLPQLAERLRSRFEWGLTIEIEPPDEKTRFELLQLKAEQSGAE-----LNMDTLEYL 295 Query: 361 ARTVTTSGRELDGAFNQLV-----FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQ 415 A+ V + REL+G+ N+++ R + P L A ++ S V E +R +I Sbjct: 296 AQEVKHNIRELEGSLNRVLAYARLLRATITPDLAARALSDIGSRPVR--ENSPLRPSNII 353 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 V++ + + +LL R + RQ AM++ K S EIG+ G R +TV HA Sbjct: 354 SAVSQVFQVPTTELLGAARDKDTALARQFAMFMLKQQNSASLVEIGQSLGGRSASTVSHA 413 Query: 476 VRKVEKMLETDITLK 490 K++ LE L+ Sbjct: 414 CDKIQMELENSAFLR 428 >gi|208435392|ref|YP_002267058.1| chromosomal replication initiator protein [Helicobacter pylori G27] gi|226735816|sp|B5Z9E3|DNAA_HELPG RecName: Full=Chromosomal replication initiator protein DnaA gi|208433321|gb|ACI28192.1| chromosomal replication initiator protein [Helicobacter pylori G27] Length = 455 Score = 156 bits (395), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 113/460 (24%), Positives = 224/460 (48%), Gaps = 47/460 (10%) Query: 46 LKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K +V P Y ++F +LK++ + +I P L WI ++ + ++ + Sbjct: 15 VKQKVSPIEYENYFSQLKYNPNASKSDIAFFYAPNMLLCNWITAKHGALLKEILSQNKVG 74 Query: 104 IQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 + + VR P ++ A + NI+ I + + + Sbjct: 75 MHLAHSVDVRIEVAPKIQINAQA-----------NINYKAI-----------KTSVKDSY 112 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N +++ Sbjct: 113 TFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 + +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 168 KHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFF 225 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 226 HTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQ 285 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSH 399 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 286 LN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLED 339 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 340 L-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLS 398 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 399 LAQFLDLKDHSSISKMYSSVKKMLEEEKNPFVLSLREEIK 438 >gi|317013298|gb|ADU83906.1| chromosomal replication initiation protein [Helicobacter pylori Lithuania75] Length = 455 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 113/460 (24%), Positives = 225/460 (48%), Gaps = 47/460 (10%) Query: 46 LKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K +V P Y + +LK+ ++ +I P L WI ++ + ++ + Sbjct: 15 VKQKVSPIEYENCLSQLKYDPNASKSDIAFFYAPNMLLCNWITAKHGALLKEILSQNKVG 74 Query: 104 IQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 + + VR +P ++ +A + NI+ I + + + Sbjct: 75 MHLAHSVDVRIEVVPKIQISAQA-----------NINYKAI-----------KTSVKDSY 112 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N +++ Sbjct: 113 TFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 + +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 168 KHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFF 225 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 226 HTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQ 285 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSH 399 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 286 LN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLED 339 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L T+ +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 340 L-QKDHTEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLS 398 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 399 LAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 438 >gi|183219428|ref|YP_001837424.1| chromosomal replication initiator protein DnaA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909574|ref|YP_001961129.1| chromosomal replication initiator protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226735824|sp|B0S907|DNAA_LEPBA RecName: Full=Chromosomal replication initiator protein DnaA gi|226735825|sp|B0SK31|DNAA_LEPBP RecName: Full=Chromosomal replication initiator protein DnaA gi|167774250|gb|ABZ92551.1| Chromosomal replication initiator protein [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777850|gb|ABZ96148.1| Chromosomal replication initiator protein DnaA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 441 Score = 156 bits (394), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 138/488 (28%), Positives = 231/488 (47%), Gaps = 66/488 (13%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +++ E I +S Q+ P ++++ L+F + +VHL P+ +K ++ +Y+ Sbjct: 1 MDIRWEEILEEISK----QIPPKYFSNFIAPLRFDKWENQVVHLMAPSGGIKRHVETKYI 56 Query: 91 ETITK-LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I ++Q R + V IL S V K I + S Sbjct: 57 GFIEDAVYQVVGDRFK-VSILTESETSSHVLKEV----------IQSKFDDS-------- 97 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S L+ ++FS +I SNR+A TAA+S+ E + NPL++ VG+GK Sbjct: 98 -----DSDLNPEYIFSNYITSDSNRIAFTAAKSVVEQPG------KYNPLYLFGPVGVGK 146 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL---KDSLRNIDLLLID 266 THLL +I N K+ P V Y+ + F+ F +R N +L K ++ ++LL D Sbjct: 147 THLLHSIGNEIKKKDPWKTVRYVNSTSFLNEFIFTVRQNNRESLESFKIRYQSYNVLLFD 206 Query: 267 DMQFLQG--KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 D+QFL G + Q EF L N L D +Q+V A+DRP EL L R++SR G+ + Sbjct: 207 DIQFLNGGAEKTQEEFFALFNFLYDRKRQIVIASDRPSYEL-PLHDRLKSRFVHGLQADI 265 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNI--NEEVLMHVARTVTTSGRELDGAFNQLV-FR 381 HD E+R S+LK+ + + NI ++ +L +A + R L G N LV ++ Sbjct: 266 KSHDLELRKSLLKSNFS-------EFNIPASDNLLHWLAERLEGDSRALIGIVNDLVMYK 318 Query: 382 HSFAPILTA-----EIAD-ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 ++ L EIA+ L++ G + M I+ +V + N++R DLL R Sbjct: 319 KAYEYFLLTEDKIKEIAEARFLTNKKRIGFSPDMVID----LVCERTNVARKDLLGKSRK 374 Query: 436 RTVVRPRQVAMYL--SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + PR + M L + P++ +IGR F H+TV+H + K ++ ++++ + Sbjct: 375 ADFIPPRHLCMLLLHDVLNVPKA--QIGRIFS-TTHSTVIHGIDKFKERMKSEAQWEDLF 431 Query: 494 ELLKRLIS 501 +K IS Sbjct: 432 HTIKHKIS 439 >gi|313900935|ref|ZP_07834425.1| chromosomal replication initiator protein DnaA [Clostridium sp. HGF2] gi|312954355|gb|EFR36033.1| chromosomal replication initiator protein DnaA [Clostridium sp. HGF2] Length = 452 Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/347 (29%), Positives = 185/347 (53%), Gaps = 17/347 (4%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F + + F +F+ G +NR A AA S+ Y NPLFI + GLGKTHL Sbjct: 107 LFEDKVKKEYTFDSFVVGKNNREAHAAALSVC-----YYPGKFNNPLFIFGNSGLGKTHL 161 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + + +V+Y+ +E F+ A+++ ++K+ + ++D LLIDD+Q L+ Sbjct: 162 LHAIGNYVKANKADEKVLYIYSEDFVTLLIEAMKNKTVEDVKEMICSVDYLLIDDIQRLK 221 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q F ++ N L+ KQ+V +D P+EL+ ++ R+ SR G+SV +G ++E Sbjct: 222 QSTSQEIFFNMYNKLISDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETA 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +IL+ ++ + ++ I++EVL ++A + R+L+G N+L F+ A + E Sbjct: 282 KAILQKKM---EGRSDEIMIDDEVLDYLATRFASDVRKLEGTLNELFFK---AILYNPER 335 Query: 393 ADELLSHLVNTGETKKMRIED------IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 D + + ++ ED I+ V ++Y ++R + S R + + R +A+ Sbjct: 336 IDITFAKEIFKENPIVVKQEDELTPKRIKNAVCEYYGLTRTQIESKSRTKNIANARHIAI 395 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 YL + F +IG FG+RDH+T++ + K+ K+L+ T ++ V Sbjct: 396 YLCRTHLEMPFAKIGFEFGNRDHSTIMSSYEKMMKLLKEKETFQQAV 442 >gi|168698781|ref|ZP_02731058.1| initiation of chromosome replication [Gemmata obscuriglobus UQM 2246] Length = 504 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 114/329 (34%), Positives = 159/329 (48%), Gaps = 26/329 (7%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 + F+ G NRVA +A S E G NPL IH VG GKTHLL+ + A +KR Sbjct: 167 LADFVSGPCNRVAHASALSAVEEPGQGA-----NPLVIHGPVGTGKTHLLEGV-YAGLKR 220 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ-GKLIQHEFCH 282 Q + R Y+TAE F +F A R + R +LL+DD+ FL K Q EF H Sbjct: 221 QSDQRPCYVTAEEFTTKFVQASRLGKMSQFRRQFRECSVLLLDDLHFLATKKATQEEFLH 280 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 ++L+ +QVV D P + L P + RL GG L D E R IL+ + Sbjct: 281 TFDALIADGRQVVVTTDCHPRLADELMPELLDRLLGGAVWGLQPPDPETRLEILRKK--- 337 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH----SFAPILTA---EIADE 395 S +P I E VL +A T+ + REL+GA N + RH + P+ A E + Sbjct: 338 SCGANPP--IPENVLKTLANTLRGNVRELEGAINSV--RHYAKVTGRPVDLATAREALGD 393 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 LL H V T + + D+ V +S L S R V PR VA+YLS+ T Sbjct: 394 LLRHAVRT-----VTVADVDAAVCATLRLSAGTLQSKARTWAVSHPRMVAIYLSRKHTAA 448 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 ++ E+ + FG + H+T + A +KV L+ Sbjct: 449 TYGEVSKHFGAKTHSTAVAAEKKVRGWLD 477 >gi|229496699|ref|ZP_04390413.1| chromosomal replication initiator protein DnaA [Porphyromonas endodontalis ATCC 35406] gi|229316596|gb|EEN82515.1| chromosomal replication initiator protein DnaA [Porphyromonas endodontalis ATCC 35406] Length = 471 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 126/475 (26%), Positives = 226/475 (47%), Gaps = 39/475 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQ-----RLKFHSVLHNIVHLSVPTNFLKAWI 85 +E N SI+ L + + + WF RL+ + N + + VP+ F +I Sbjct: 1 MEQNVNSIWQECLVHLSSHIPSKQFNIWFHPIEPVRLEGN----NTIVVKVPSAFFCEYI 56 Query: 86 KNRYLETITKLFQE---EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 + + + + + EH+R++ + +V S + TA +T +S + + S + Sbjct: 57 EQNFAIQMQQALRSVLGEHARLRYLA-MVDSTS----NNTAEGCLLTSMSEASLSTSPAS 111 Query: 143 IILG----KQTISPVFGSPLDSR----FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 I G + + D++ F F +FI G SN VAL+ A+ I Sbjct: 112 IPQGISVPHNDVGATNPTQWDTKLLPPFTFDSFIRGESNDVALSLARRICVEPGDAM--- 168 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 +NP FI+ G+GKTH++ A+ +++ +LRV+Y+T F+ +F +A ++ + Sbjct: 169 -MNPFFIYGPPGVGKTHMMNAMGWEILRQHSDLRVLYVTTLQFVQQFTAASKNKKVPDFI 227 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + ID+LL+DD+Q L+GK Q F + N L KQ+V +DR S+ +L RI Sbjct: 228 KYYQQIDVLLLDDIQELEGKERSQQAFFEIFNHLYSLGKQIVLTSDRSVSDFNALSERIV 287 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR+ G ++ + D +R IL N+LA + + EEV + + + S RE+DG Sbjct: 288 SRMAGSLTAQIKRPDLCLRREIL-NKLA----SQGGVVLTEEVSDFIVKNASHSVREIDG 342 Query: 374 AFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 + + S +PI + E+LS + E +++ +E+IQ++V ++++I + + Sbjct: 343 VLSSIFLSASVTGSPI-DLSFSREILSRTIRM-EEREVTLENIQKLVCENFHIPAHQVKG 400 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 R + +V R + M+L+ T S IG G R H TV+H + D Sbjct: 401 KSRRQDIVMARHIIMFLANKHTKESLSSIGHYLGGRSHATVIHGCNSTRDAISID 455 >gi|261838801|gb|ACX98567.1| chromosomal replication initiator protein [Helicobacter pylori 51] Length = 455 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 182/341 (53%), Gaps = 22/341 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTEFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ S API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 438 >gi|297380624|gb|ADI35511.1| chromosomal replication initiator protein DnaA [Helicobacter pylori v225d] Length = 455 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 118/459 (25%), Positives = 224/459 (48%), Gaps = 45/459 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K +V P Y + +LK+++ +I P L WI ++ + ++ + Sbjct: 15 IKQKVSPIEYENCLSQLKYNANASKSDIAFFYAPNMLLCNWITAKHGALLKEILSQNKVG 74 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + L SV + + +P I IS P I K + V S + Sbjct: 75 MH----LAHSVDV----RIEVAPKIQ--------ISAQPNINYKAVKTSVKDS-----YT 113 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++++ Sbjct: 114 FENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHALEK 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 RVV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF H Sbjct: 169 HK--RVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFH 226 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + + Sbjct: 227 TFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQL 286 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHL 400 + K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L L Sbjct: 287 N-----KITLPEEVMEYIAQHISDNIRQMEGAIIKINVNANLMNAPI-DLNLAKTVLEDL 340 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP + Sbjct: 341 -QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLSL 399 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + +DH+++ V+KMLE + ++L++E++ Sbjct: 400 AQFLDLKDHSSISKMYSSVKKMLEEEKSPFVLSLREEIK 438 >gi|158834335|gb|ABW81967.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/314 (31%), Positives = 168/314 (53%), Gaps = 23/314 (7%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 P ++ + P+ K S + SPI G V+ S ++ + F TF+EG SN++A Sbjct: 14 PQIDSETNRPASLKPS-----WAPSPIKSGY-----VYRSNVNLKNTFDTFVEGKSNQLA 63 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA ++ Y NPLF++ GLGKTHLL A+ N I + +VVY+ +E Sbjct: 64 RAAAIQVSGNPGAAY-----NPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAKVVYMHSER 118 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A+++N K R++D LLIDD+QF K Q EF H LN+LL+ +Q++ Sbjct: 119 FVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTLNALLEGNQQII 178 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + + E Sbjct: 179 LTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAIL-----MKKADENNIRLPGE 233 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDI 414 V +A+ + ++ REL+GA N+++ +F +T + + L L+ E K + I++I Sbjct: 234 VAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDLLALQE-KLVTIDNI 292 Query: 415 QRMVAKHYNISRND 428 QR VA +Y I D Sbjct: 293 QRTVAAYYKIKVAD 306 >gi|160914813|ref|ZP_02077027.1| hypothetical protein EUBDOL_00820 [Eubacterium dolichum DSM 3991] gi|158433353|gb|EDP11642.1| hypothetical protein EUBDOL_00820 [Eubacterium dolichum DSM 3991] Length = 459 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 116/432 (26%), Positives = 218/432 (50%), Gaps = 32/432 (7%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 ++ WF + + ++ ++VP K I + Y + L +E+ S + E+ + + Sbjct: 39 FSVWFDGSQLFDIRDDLAIITVPYKVNKQIISDLYKD----LIKEKLSIVLEHEVECQIL 94 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 ++K S I K + +NI +F ++ + F +F+ G +NR Sbjct: 95 ----LKKEVDSEYINKDALRRSNI--------------LFEDKINPEYTFDSFVVGKNNR 136 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ S Y NPLFI + GLGKTHLL AI N + +P +V+Y+ + Sbjct: 137 EAHAASLSAC-----YYPGKFNNPLFIFGNSGLGKTHLLHAIGNYIKENRPEDKVLYIYS 191 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQV 294 E F+ A+++ +K+ + + D LLIDD+Q L+ Q F ++ N L+ KQ+ Sbjct: 192 EDFVTLLIEAMKNKNVEEVKEKICSADYLLIDDIQRLKQSTSQELFFNMYNKLIRDNKQI 251 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V +D P+EL+ ++ R+ SR G+SV +G ++E +IL+ ++ + + ++ I + Sbjct: 252 VITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFETAKAILQKKI---EGRNEEILIED 308 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP-ILTAEIADELLSHLVNTGETKKMRIE 412 EVL ++A + R+L+GA N+L F+ + P + + A E+ T ++ + Sbjct: 309 EVLDYLATRFASDVRKLEGALNELFFKSILYNPDTIDLKFAKEIFKENPMTVTNDELSVN 368 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I++ V Y +++ + S R + + R +A+YL + F +IG FG+RDH+T+ Sbjct: 369 KIKKAVCDFYGLTKTQIESKSRTKNIANARHIAVYLCRKHLDMPFAKIGLEFGNRDHSTI 428 Query: 473 LHAVRKVEKMLE 484 + + K+ K+L+ Sbjct: 429 MSSYEKMVKLLK 440 >gi|296125059|ref|YP_003632311.1| chromosomal replication initiator protein DnaA [Brachyspira murdochii DSM 12563] gi|296016875|gb|ADG70112.1| chromosomal replication initiator protein DnaA [Brachyspira murdochii DSM 12563] Length = 459 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 120/427 (28%), Positives = 212/427 (49%), Gaps = 34/427 (7%) Query: 79 NFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA-------LPSVEKTASSPSITKL 131 +F IK +L I K F ++ S ++I VR A +P E S Sbjct: 47 DFAATHIKKDFLGRIKKFFNDKCS--NNIDIDVRVDADFVNEHLMPEEEYHEKSEKTDNN 104 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 + + +N K + K S L+ F F FI+G++NR AA+ ++ Y Sbjct: 105 AEV-SNTVKKEVSNNK--------SNLNDYFRFDNFIQGNNNRYVFEAAKYVSSNPGKEY 155 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NP +++ SVG+GKTHLLQAI N+ ++ PN +V+Y+ F + S +++ Sbjct: 156 -----NPFYVYGSVGIGKTHLLQAIGNSYLEANPNAKVLYIDGSGFRDEYVSCLQNKKPE 210 Query: 252 NLKDSLRNIDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K +++D+LL+DD+Q L+ + E + +L +AKQ+V +D+PP EL +++ Sbjct: 211 VFKRKYKSLDMLLLDDLQLLESAQETSKELFEIFQALDSAAKQMVFVSDKPPKELRNIES 270 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+++R + + + + YE R +I++ +L D +I+EEV+ ++A +TT R+ Sbjct: 271 RLKNRFEKSLILSIEPPQYETRLAIIERKLF-----DLHTSIDEEVMKYMAENITTDVRK 325 Query: 371 LDGAFNQLVFRHSFAPIL----TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 ++GA + I E + N + K +++I++MVA +Y I Sbjct: 326 IEGAIRAYLSVRDLMKITPDVEQCEKMGIFKDYFTNKPKLKNATVKEIKKMVADYYGIEM 385 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 + S R + + + R VA+YLS + +S EIG F +RDH +++H KV+ L + Sbjct: 386 SSFESKDRTKFIAKARHVAIYLSCEYSKKSVTEIGLEF-NRDHASIIHGRDKVKDELRSG 444 Query: 487 ITLKKEV 493 L E+ Sbjct: 445 SHLFSEI 451 >gi|303233454|ref|ZP_07320122.1| putative chromosomal replication initiator protein DnaA [Atopobium vaginae PB189-T1-4] gi|302480462|gb|EFL43554.1| putative chromosomal replication initiator protein DnaA [Atopobium vaginae PB189-T1-4] Length = 698 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 118/406 (29%), Positives = 202/406 (49%), Gaps = 45/406 (11%) Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 S T+S S + N K+P ++ + V GS L F F++G N A Sbjct: 309 SYAPTSSQEPAQTTSKTHANTHKNPY---QEAVPNVVGSKL----TFDRFVQGEENMFAF 361 Query: 178 TAAQSIA-EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AAQ +A ++S Y NPLFI++ GLGKTHLL+AI N I+ P +Y TA Sbjct: 362 QAAQQVACGINSQSY-----NPLFIYSKSGLGKTHLLRAIQNYIIQNDPERVCIYKTATE 416 Query: 237 FMWRFASA---IRDNCALNLKDSLRNIDLLLIDDMQFLQ--GKLIQHEFCHLLNSLLDSA 291 F+ + A I AL + +++D+L+IDD+Q ++ I+ F N+L+ S Sbjct: 417 FVDEYTRAWQSIEHKGAL--YERYKHVDVLIIDDIQNMRTAAGTIKF-FFDTFNTLMASG 473 Query: 292 KQVVAAADRPPSELE----SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 KQ+V AADR P EL+ D R SR+ GV+V + + +YE++++++ N D Sbjct: 474 KQIVLAADRSPQELQMGESKFDERETSRMDSGVTVTIQVPNYELKYNLI-NSFYDYMHHD 532 Query: 348 PKLNINEEVL--------MHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH 399 + N +++L ++AR ++ R ++G + + + L ++ D + Sbjct: 533 AENNAEKDMLGTITPEQRAYMARLAGSNIRVIEGFVHTCLMQAGRLKHLKKQLTDADILA 592 Query: 400 LVNTGETKKMR---IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 + K+ + +E +Q ++ Y + DL+ N+R + ++ PR V ++L + +T + Sbjct: 593 IAEKKWPKQQKTVTMEQVQHVIEMRYGVDHKDLIGNKRNKELMEPRHVCIWLIRELTDST 652 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL-KRLIS 501 +IG +FG+R H T+ H++ V T KKE L RL+S Sbjct: 653 LADIGDKFGNRTHATIKHSITWVN-------TKKKEDRLFYDRLVS 691 >gi|13235398|emb|CAC33675.1| DnaA protein [Rickettsia rickettsii] Length = 255 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/257 (35%), Positives = 147/257 (57%), Gaps = 16/257 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVTELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLD 289 K Q EF H N+L+D Sbjct: 239 KDSTQEEFFHTFNTLID 255 >gi|94266099|ref|ZP_01289816.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] gi|93453344|gb|EAT03778.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] Length = 447 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 106/346 (30%), Positives = 181/346 (52%), Gaps = 16/346 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L R+ F F+ G SN +A +A ++IA + V FI+A GLGK+HL A+A Sbjct: 108 LHPRYTFDEFMVGDSNALAHSACEAIATGTTQAEPCV-----FINAGTGLGKSHLTHAVA 162 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-RNIDLLLIDDMQFLQGK-L 275 + P R+ LT++ IR+N K+ R D+LL++D+Q L G+ Sbjct: 163 HHLYNNAPGTRLCCLTSQQLTAELVHHIRNNSMEQFKEKFQRRCDVLLVEDVQTLSGRSK 222 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q E ++SLLDS ++V+ R P E+ LD +RSRL G+ + D + R I Sbjct: 223 TQVELAEAVDSLLDSGRRVLFTGSRSPREIPDLDEGVRSRLASGLVTTINPPDIKTRRLI 282 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-TAEIAD 394 ++ + KL ++EE++ ++A V R+++ A L + + I T E+ Sbjct: 283 IRRKAVFH-----KLALDEEMVAYIAEKVRGDIRKVESAIVGLKAKANLRRIAPTTEMVR 337 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+++ + E + E I+ VA + +S +L S R + + PRQV+MYL++ +T Sbjct: 338 EVVATVAGE-EAPGLNSEAIRDFVAAQFKLSVEELRSKSRKKEITFPRQVSMYLARKLTD 396 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LLKRL 499 IG+ F DRDH+TV+H++R + + + + +++ ++E L KRL Sbjct: 397 EGLAGIGKAF-DRDHSTVVHSIRVINEAVARNGSVRGQIEHLTKRL 441 >gi|13235385|emb|CAC33735.1| DnaA protein [Rickettsia typhi] Length = 255 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 147/257 (57%), Gaps = 16/257 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSYVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYAMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + V P +T S NIS S + + TIS Sbjct: 74 LQLFQHYNNAIKSIEIITKEV--PGTTQTVIELPTKTFS----NISNSAL-NSENTIST- 125 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 LD RF F F+ G+ N +A AA+++AE S G NPLF++ VGLGKTHL+ Sbjct: 126 ----LDLRFTFDNFVVGAPNELAYAAARAVAE--SSG-AVFESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ + K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLD 289 K Q EF H N+L+D Sbjct: 239 KDSTQEEFFHTFNTLID 255 >gi|331703021|ref|YP_004399708.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801576|emb|CBW53729.1| Chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 450 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 180/342 (52%), Gaps = 13/342 (3%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G+SN A A Q++++ Y NPLFI+ G+GKTHLL+A N Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 169 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ + D + +I+K + Sbjct: 229 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL--LS 398 + ++ K + E + ++ + R++ G+ ++L F P + + L Sbjct: 289 ---KNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIISDLF 345 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + T + + ++ I+ +V++ Y IS N + R +++V R +AM+L+K + + Sbjct: 346 RDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMFLTKEILNHTLA 405 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 406 QIGEEFGGRDHTTVINAERKIEMMLKKDKQLKKTVDILKNKI 447 >gi|317178231|dbj|BAJ56020.1| chromosomal replication initiation protein [Helicobacter pylori F16] Length = 455 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 182/341 (53%), Gaps = 22/341 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L+KE++ Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFVLSLRKEIK 438 >gi|256383664|gb|ACU78234.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. capri str. GM12] gi|296455846|gb|ADH22081.1| chromosomal replication initiator protein DnaA [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 450 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 180/342 (52%), Gaps = 13/342 (3%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G+SN A A Q++++ Y NPLFI+ G+GKTHLL+A N Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 169 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ + D + +I+K + Sbjct: 229 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL--LS 398 + ++ K + E + ++ + R++ G+ ++L F P + + L Sbjct: 289 ---KNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIISDLF 345 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + T + + ++ I+ +V++ Y IS N + R +++V R +AM+L+K + + Sbjct: 346 RDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMFLTKEILNHTLA 405 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 406 QIGEEFGGRDHTTVINAERKIETMLKKDKQLKKTVDILKNKI 447 >gi|242280649|ref|YP_002992778.1| chromosomal replication initiator DnaA [Desulfovibrio salexigens DSM 2638] gi|242123543|gb|ACS81239.1| Chromosomal replication initiator DnaA [Desulfovibrio salexigens DSM 2638] Length = 453 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 128/460 (27%), Positives = 222/460 (48%), Gaps = 38/460 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ + P +Y W + LK V N + L P +F+ AW+++R ++ I + ++ Sbjct: 13 LEKGLNPGLYKVWIKPLKAE-VSSNTIKLYAPNDFVAAWVRDRLMDNIKEAGEQVLGTSP 71 Query: 106 GVEILVR-SVALPSVEKTASSPSITKLSPINTNIS----KSPIILGKQTISPVFGSPLDS 160 VEI VR SV P+V+ P+ + P+ ++ S ++ T P + Sbjct: 72 KVEIGVRKSVERPAVKVDRPRPAAAR--PVQASMGLPMMSSAVV---NTRIPRW------ 120 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN-- 218 RF F F+ G SNR+A A++S+ + G + LF+ ++ GLGKTHLL +I Sbjct: 121 RFSFDDFVIGESNRLACAASRSLCDNSLPG------DQLFMSSAPGLGKTHLLHSIGKNL 174 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-I 276 + + N+ + LTAE F R A++ K R N+D LL++D+ F QGK + Sbjct: 175 CASSNKKNISIACLTAEEFANRMVLALKAGEISRFKSEFRDNVDCLLLEDIHFFQGKQKM 234 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E L SL +VV + P EL+ +DP++ SR G+ + D+E R I+ Sbjct: 235 QDEILETLKSLQLRGSKVVMTSSFLPRELDKVDPQLVSRFSSGLLALISTPDFETRKRIV 294 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 +++ AI +I+E +A +TT R+L+ LV + A +L +++ EL Sbjct: 295 ESK-AIRLGTQVPDSISE----LLADRITTDVRQLESCLQNLVLK---ARLLNRDVSQEL 346 Query: 397 LSHLVNTGETKKM--RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++ K + I + + Y ++ + L S R R +V R A +L++ T Sbjct: 347 AWQVLENYSIAKAAPSYDSIVDHICRSYELTADQLRSKSRKRQIVLARNTAFFLARKHTE 406 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S +IG R G R H+TV+ + +E+ + L ++++ Sbjct: 407 LSLKDIGTRLG-RRHSTVIKGITNIEREISLQTPLGRQLQ 445 >gi|188528299|ref|YP_001910986.1| chromosomal replication initiation protein [Helicobacter pylori Shi470] gi|226735817|sp|B2UVS4|DNAA_HELPS RecName: Full=Chromosomal replication initiator protein DnaA gi|188144539|gb|ACD48956.1| chromosomal replication initiation protein [Helicobacter pylori Shi470] Length = 455 Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 117/459 (25%), Positives = 224/459 (48%), Gaps = 45/459 (9%) Query: 46 LKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K +V P Y + +LK++ + +I P L WI ++ + ++ + Sbjct: 15 IKQKVSPIEYENCLSQLKYNPNASKSDIAFFYAPNMLLCNWITAKHGALLKEILSQNKVG 74 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + L SV + + +P I IS P I K + V S + Sbjct: 75 MH----LAHSVDV----RIEVAPKI--------QISAQPNINYKAVKTSVKDS-----YT 113 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++++ Sbjct: 114 FENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHALEK 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF H Sbjct: 169 HK--KVVLVTSEDFLTDFLKHLDNQTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFFH 226 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + + Sbjct: 227 TFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQL 286 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHL 400 + K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L L Sbjct: 287 N-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLEDL 340 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP + Sbjct: 341 -QKDHAEGSSLENILLAVAQSLNLKSSEIKISSRQKNVALARKLVVYFARLYTPNPTLSL 399 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + +DH+++ V+KMLE + ++L++E++ Sbjct: 400 AQFLDLKDHSSISKMYSSVKKMLEEEKSPFVLSLREEIK 438 >gi|217034280|ref|ZP_03439697.1| hypothetical protein HP9810_885g11 [Helicobacter pylori 98-10] gi|216943252|gb|EEC22717.1| hypothetical protein HP9810_885g11 [Helicobacter pylori 98-10] Length = 455 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 182/341 (53%), Gaps = 22/341 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ S API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFVLSLREEIK 438 >gi|317179709|dbj|BAJ57497.1| chromosomal replication initiation protein [Helicobacter pylori F30] Length = 455 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 182/341 (53%), Gaps = 22/341 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ S API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 438 >gi|158834319|gb|ABW81959.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 99/314 (31%), Positives = 167/314 (53%), Gaps = 23/314 (7%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 P ++ + P+ K S + SPI G V+ S ++ + F TF+EG SN++A Sbjct: 14 PQIDSETNRPASLKPS-----WAPSPIKSGY-----VYRSNVNLKNTFDTFVEGKSNQLA 63 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA ++ Y NPLF++ GLGKTHLL A+ N I + +VVY+ +E Sbjct: 64 RAAAIQVSGNPGAAY-----NPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAKVVYMHSER 118 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ Sbjct: 119 FVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQII 178 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + + E Sbjct: 179 LTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAIL-----MKKADENNIRLPRE 233 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDI 414 V +A+ + ++ REL+GA N+++ +F +T + + L L+ E K + I++I Sbjct: 234 VAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDLLALQE-KLVTIDNI 292 Query: 415 QRMVAKHYNISRND 428 QR VA +Y I D Sbjct: 293 QRTVAAYYKIKVAD 306 >gi|317181210|dbj|BAJ58996.1| chromosomal replication initiation protein [Helicobacter pylori F32] Length = 455 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 182/341 (53%), Gaps = 22/341 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ S API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 438 >gi|308064285|gb|ADO06172.1| chromosomal replication initiation protein [Helicobacter pylori Sat464] Length = 455 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 93/328 (28%), Positives = 174/328 (53%), Gaps = 17/328 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N +I Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAI 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 QKHK--KVVLVTSEDFLTDFLKHLDNQTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD 486 + + +DH+++ V+KMLE + Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEE 425 >gi|108563812|ref|YP_628128.1| chromosomal replication initiation protein [Helicobacter pylori HPAG1] gi|123246872|sp|Q1CRG8|DNAA_HELPH RecName: Full=Chromosomal replication initiator protein DnaA gi|107837585|gb|ABF85454.1| chromosomal replication initiator protein [Helicobacter pylori HPAG1] Length = 455 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 115/461 (24%), Positives = 220/461 (47%), Gaps = 51/461 (11%) Query: 47 KNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI 104 K +V P Y + +LK++ + +I P L WI +Y + ++ + + Sbjct: 16 KQKVSPIEYENCLSQLKYNPNASKSDIAFFYAPNTLLCNWITAKYGTLLKEILSQNKVGM 75 Query: 105 Q-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + VR P ++ I+ S IN +K + + Sbjct: 76 HLAHSVDVRIEVAPKIQ-------ISTQSNINYKATKMSV---------------KDSYT 113 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++++ Sbjct: 114 FENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHALEK 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF H Sbjct: 169 HK--KVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFH 226 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + + Sbjct: 227 TFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQL 286 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLS 398 +Q P EEV+ ++A+ ++ + R+++GA ++ A ++ A I A +L Sbjct: 287 NQIILP-----EEVMEYIAQHISDNIRQMEGAIIKISVN---ANLMNASIDLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 438 >gi|261840200|gb|ACX99965.1| chromosomal replication initiator protein DnaA [Helicobacter pylori 52] Length = 455 Score = 154 bits (388), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 93/340 (27%), Positives = 181/340 (53%), Gaps = 20/340 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSH 399 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ V + + +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTILED 339 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L + +E+I VA+ N+ N++ + R + V R++ +Y +++ TP Sbjct: 340 L-QKDHAEGSSLENILLAVAQSLNLKSNEIKVSSRQKNVALARKLVVYFARLYTPNPTLS 398 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 399 LAQFLDLKDHSSISKMYSSVKKMLEEEKSPFVLSLREEIK 438 >gi|158834309|gb|ABW81954.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834325|gb|ABW81962.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834327|gb|ABW81963.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834329|gb|ABW81964.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834331|gb|ABW81965.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834333|gb|ABW81966.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834337|gb|ABW81968.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834339|gb|ABW81969.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834341|gb|ABW81970.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834343|gb|ABW81971.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834345|gb|ABW81972.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834347|gb|ABW81973.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834351|gb|ABW81975.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834353|gb|ABW81976.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 154 bits (388), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 99/314 (31%), Positives = 167/314 (53%), Gaps = 23/314 (7%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 P ++ + P+ K S + SPI G V+ S ++ + F TF+EG SN++A Sbjct: 14 PQIDSETNRPASLKPS-----WAPSPIKSGY-----VYRSNVNLKNTFDTFVEGKSNQLA 63 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA ++ G NPLF++ GLGKTHLL A+ N I + +VVY+ +E Sbjct: 64 RAAAIQVS-----GNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAKVVYMHSER 118 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ Sbjct: 119 FVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQII 178 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + + E Sbjct: 179 LTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAIL-----MKKADENNIRLPGE 233 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDI 414 V +A+ + ++ REL+GA N+++ +F +T + + L L+ E K + I++I Sbjct: 234 VAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDLLALQE-KLVTIDNI 292 Query: 415 QRMVAKHYNISRND 428 QR VA +Y I D Sbjct: 293 QRTVAAYYKIKVAD 306 >gi|256384495|gb|ACU79064.1| chromosomal replication initiator protein DnaA [Mycoplasma mycoides subsp. capri str. GM12] gi|256384749|gb|ACU79318.1| chromosomal replication initiator protein DnaA [unidentified plasmid] Length = 450 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 180/342 (52%), Gaps = 13/342 (3%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G+SN A A Q++++ Y NPLFI+ G+GKTHLL+A N Sbjct: 114 FENFVIGASNEQAFIAVQTVSKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 169 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ + D + +I+K + Sbjct: 229 FTIFNNSIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL--LS 398 + ++ K + E + ++ + R++ G+ ++L F P + + L Sbjct: 289 ---KNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIISGLF 345 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + T + + ++ I+ +V++ Y IS N + R +++V R +AM+L+K + + Sbjct: 346 RDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMFLTKEILNHTLA 405 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 406 QIGEEFGGRDHTTVINAERKIETMLKKDKQLKKTVDILKNKI 447 >gi|308185298|ref|YP_003929431.1| chromosomal replication initiation protein [Helicobacter pylori SJM180] gi|308061218|gb|ADO03114.1| chromosomal replication initiation protein [Helicobacter pylori SJM180] Length = 455 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 113/462 (24%), Positives = 223/462 (48%), Gaps = 51/462 (11%) Query: 46 LKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K +V P Y ++F +LK++ + +I P L I +Y + ++ + Sbjct: 15 VKQKVSPIEYENYFSQLKYNPNASKSDIAFFYAPNQVLCTTITAKYGALLKEILSQNKVG 74 Query: 104 IQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 + + VR P ++ A S NI+ + + + + Sbjct: 75 MHLAHSVDVRIEVAPKIQVNAQS-----------NINYKAV-----------KTSVKDSY 112 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N +++ Sbjct: 113 TFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHALE 167 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 + +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 168 KHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEFF 225 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 226 HTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQ 285 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELL 397 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ A ++ A I A +L Sbjct: 286 LN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVN---ANLMNATIDLNLAKTVL 337 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 338 EDL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPT 396 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 397 LSLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 438 >gi|158834311|gb|ABW81955.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834313|gb|ABW81956.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834315|gb|ABW81957.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834317|gb|ABW81958.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834321|gb|ABW81960.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] gi|158834323|gb|ABW81961.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 153 bits (387), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 99/311 (31%), Positives = 166/311 (53%), Gaps = 22/311 (7%) Query: 124 SSPSI----TKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 SSP I + + + + SPI G V+ S ++ + F TF+EG SN++A A Sbjct: 12 SSPQIDSETNRPASLKPGWAPSPIKSGY-----VYRSNVNLKNTFDTFVEGKSNQLARAA 66 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A ++ Y NPLF++ GLGKTHLL A+ N I + +VVY+ +E F+ Sbjct: 67 AIQVSGNPGAAY-----NPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAKVVYMHSERFVQ 121 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ + Sbjct: 122 DMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTS 181 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DR P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV Sbjct: 182 DRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAIL-----MKKADENNIRLPGEVAF 236 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F +T + + L L+ E K + I++IQR Sbjct: 237 FIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDLLALQE-KLVTIDNIQRT 295 Query: 418 VAKHYNISRND 428 VA +Y I D Sbjct: 296 VAAYYKIKVAD 306 >gi|323697422|ref|ZP_08109334.1| chromosomal replication initiator protein DnaA [Desulfovibrio sp. ND132] gi|323457354|gb|EGB13219.1| chromosomal replication initiator protein DnaA [Desulfovibrio desulfuricans ND132] Length = 453 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 128/460 (27%), Positives = 214/460 (46%), Gaps = 38/460 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+ + P ++ W + L+ V N + L+ P F+ W+++R L+ I +E + + Sbjct: 13 LEKSLNPGLFTVWIKPLQ-GRVDGNRLTLTAPNEFVANWVRDRLLQVI----RESAAEVL 67 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTN---ISKSPIILG---KQTISPVFGSPLD 159 G E + ++ A P+ +P+ + +P +G QT+ PV S + Sbjct: 68 GAEPRI------TINIGAREPAAKAAAPVGKKQAVAAPAPRHMGLPLGQTLKPVTVS--N 119 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN- 218 RF F F+ G SN +A A++SI G + + LF+ + GLGKTHLLQ++ N Sbjct: 120 WRFSFDDFVVGPSNELACAASKSI------GSSAFNSDHLFLSSGPGLGKTHLLQSVGNE 173 Query: 219 -ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK-L 275 + +L+V L++E F R+ A + K R ID+LL++D+ F QGK Sbjct: 174 LCRTANRKHLKVACLSSEEFATRWVLAFKSGQVDQFKAQFRQGIDVLLLEDVHFFQGKEK 233 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 +Q E L +L + +VV + P E +D R+ SR G + D E R Sbjct: 234 MQEELLCTLTALRERGCKVVLTSSFMPKEFSKVDDRLVSRFCSGFLAHINRPDMETR--- 290 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 R+ + + ++ + EV +A +TT R+L+ N L+ + +T +A Sbjct: 291 --RRIILDKARRMQVAVPGEVSELLAERITTDIRQLESCLNNLILKARLLNRDVTMNLAW 348 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+L + + I + + K Y +S +L S R R VV R A YL++ T Sbjct: 349 EVLENYAVQNASPDF--AHIIQFICKCYELSEEELRSKSRKRDVVLARNTAFYLARKHTE 406 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 S IG R G R H+TVL + KVE+ + L +++E Sbjct: 407 LSLKSIGERLG-RKHSTVLKGITKVEREISLQTPLGRQIE 445 >gi|163785265|ref|ZP_02179928.1| chromosomal replication initiation protein [Hydrogenivirga sp. 128-5-R1-1] gi|159879465|gb|EDP73306.1| chromosomal replication initiation protein [Hydrogenivirga sp. 128-5-R1-1] Length = 347 Score = 153 bits (387), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 102/346 (29%), Positives = 180/346 (52%), Gaps = 40/346 (11%) Query: 69 HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSI 128 N + P K W+++ +L+ I K+ + + G ++ V ++ V+ I Sbjct: 33 ENKFQIYAPDIVYKDWLESNFLKVIQKVAK----NLTGKDLAVEVISQEEVDLRNEKSQI 88 Query: 129 TKLSPINT---NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 K P + NI+ +P ++ FS I G+ N++A AA ++AE Sbjct: 89 EKELPQDKLIRNINLNP------------------KYTFSNLIIGNCNKIAYKAAIAVAE 130 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 Y NPLFI+ +GLGKTH+L A A+ + + P ++Y TA+ FM + + Sbjct: 131 NPGKIY-----NPLFIYGGIGLGKTHILHATAHYMLSKNPRANIIYTTADAFMSELIAYM 185 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 + L+ + +NIDLLLIDD+QFL GK Q EF ++ N+L KQV+ ++D PPS+ Sbjct: 186 QKGSILDFRRRYKNIDLLLIDDVQFLVGKERTQVEFYYIFNALHLIGKQVILSSDTPPSK 245 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 L+ + R+ SR G+ V + D + + SI++ + + + K+N+ +V++ +A+TV Sbjct: 246 LKGIQERLLSRFSSGLIVEVKPPDIDTKLSIIRKKAS-----EMKMNLPHDVMLFIAKTV 300 Query: 365 TTSGRELDGAFNQLVFRHSFAPILTAEIADELLSH-LVNTGETKKM 409 T+ REL+G+ +L +++ I+ +I E+ L + E KK+ Sbjct: 301 NTNIRELEGSLMKL---KAYSEIMERQITLEMTREVLKDICEIKKL 343 >gi|73747957|ref|YP_307196.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. CBDB1] gi|73659673|emb|CAI82280.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. CBDB1] Length = 444 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 117/343 (34%), Positives = 184/343 (53%), Gaps = 24/343 (6%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 SP + R+ F +FI GS NR+A A+ + A+ Y NPL+I+A GLGKTHLLQA Sbjct: 102 SPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKSY-----NPLYIYAEAGLGKTHLLQA 156 Query: 216 IAN-ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 I + A++ R+ + +Y++ E F F S+IR+ + R++DLLL+DD+QF+ GK Sbjct: 157 IGHLANLNRR---KALYVSGEQFTTDFISSIRNGQTEEFRSRYRDVDLLLLDDVQFIGGK 213 Query: 275 LIQHEFC--HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q E C H N L +S +Q+V +AD PP L L R+RSR + G+++ + D + R Sbjct: 214 E-QTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRFEWGLTIEIEPPDEKTR 272 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-----FRHSFAPI 387 +L+ + S E +N + L ++A+ V + REL+G+ N+++ R + P Sbjct: 273 LELLQLKAEQSGTE-----LNMDTLEYLAQAVKHNIRELEGSLNRVLAYARLLRAAITPD 327 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 L A ++ S V E +R +I V++ + I +LL R + RQ AM+ Sbjct: 328 LAARALSDIGSRPVR--ENSPLRPGNIISAVSQVFQIPTTELLGAARDKDTALARQFAMF 385 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 + K S EIG+ G R +TV HA K++ LE L+ Sbjct: 386 ILKQQNSASLVEIGQSLGGRSASTVSHACDKIQLELENSTFLR 428 >gi|158834349|gb|ABW81974.1| transcriptional dual regulator [Candidatus Hamiltonella defensa] Length = 306 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 99/314 (31%), Positives = 166/314 (52%), Gaps = 23/314 (7%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 P ++ + P+ K S SPI G V+ S ++ + F TF+EG SN++A Sbjct: 14 PQIDSETNRPASLKPS-----WEPSPIKSGY-----VYRSNVNLKNTFDTFVEGKSNQLA 63 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA ++ G NPLF++ GLGKTHLL A+ N I + +VVY+ +E Sbjct: 64 RAAAIQVS-----GNPGAAYNPLFLYGDTGLGKTHLLHAVGNGIIAHKTKAKVVYMHSER 118 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ Sbjct: 119 FVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQII 178 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + + E Sbjct: 179 LTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVAIL-----MKKADENNIRLPGE 233 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDI 414 V +A+ + ++ REL+GA N+++ +F +T + + L L+ E K + I++I Sbjct: 234 VAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFVRDALRDLLALQE-KLVTIDNI 292 Query: 415 QRMVAKHYNISRND 428 QR VA +Y I D Sbjct: 293 QRTVAAYYKIKVAD 306 >gi|33867691|gb|AAQ55180.1| DnaA [Mycoplasma mycoides subsp. capri LC] gi|259045721|gb|ACV91303.1| DnaA [Cloning vector pMycoPuro] Length = 450 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 179/342 (52%), Gaps = 13/342 (3%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G+SN A A Q+ ++ Y NPLFI+ G+GKTHLL+A N Sbjct: 114 FENFVIGASNEQAFIAVQTASKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 169 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVLIIDDVQFLSYKEKTNEIF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ + D + +I+K + Sbjct: 229 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL--LS 398 + ++ K + E + ++ + R++ G+ ++L F P + + L Sbjct: 289 ---KNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIISDLF 345 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + T + + ++ I+ +V++ Y IS N + R +++V R +AM+L+K + + Sbjct: 346 RDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMFLTKEILNHTLA 405 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+E ML+ D LKK V++LK I Sbjct: 406 QIGEEFGGRDHTTVINAERKIETMLKKDKQLKKTVDILKNKI 447 >gi|147668653|ref|YP_001213471.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. BAV1] gi|146269601|gb|ABQ16593.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. BAV1] Length = 444 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 118/344 (34%), Positives = 188/344 (54%), Gaps = 26/344 (7%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 SP + R+ F +FI GS NR+A A+ + A+ Y NPL+I+A GLGKTHLLQA Sbjct: 102 SPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKSY-----NPLYIYAEAGLGKTHLLQA 156 Query: 216 IAN-ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 I + A++ R+ + +Y++ E F F S+IR+ + R++DLLL+DD+QF+ GK Sbjct: 157 IGHLANLNRR---KALYVSGEQFTTDFISSIRNGQTEEFRSRYRDVDLLLLDDVQFIGGK 213 Query: 275 LIQHEFC--HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q E C H N L +S +Q+V +AD PP L L R+RSR + G+++ + D + R Sbjct: 214 E-QTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRFEWGLTIEIEPPDEKTR 272 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +L+ + S E +N + L ++A+ V + REL+G+ N+++ ++A +L A I Sbjct: 273 LELLQLKAEQSGTE-----LNMDTLEYLAQAVKHNIRELEGSLNRVL---AYARLLRAAI 324 Query: 393 ADELLSH-LVNTG-----ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +L + L + G E +R +I V++ + I +LL R + RQ AM Sbjct: 325 TPDLAARALSDIGSRPVRENSPLRPGNIISAVSQVFQIPTTELLGAARDKDTALARQFAM 384 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 ++ K S EIG+ G R +TV HA K++ LE L+ Sbjct: 385 FILKQQNSASLVEIGQSLGGRSASTVSHACDKIQLELENSTFLR 428 >gi|289431956|ref|YP_003461829.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. GT] gi|288945676|gb|ADC73373.1| chromosomal replication initiator protein DnaA [Dehalococcoides sp. GT] Length = 444 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 117/343 (34%), Positives = 184/343 (53%), Gaps = 24/343 (6%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 SP + R+ F +FI GS NR+A A+ + A+ Y NPL+I+A GLGKTHLLQA Sbjct: 102 SPFNPRYTFESFIVGSCNRMAHAASLAAAQNPGKSY-----NPLYIYAEAGLGKTHLLQA 156 Query: 216 IAN-ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 I + A++ R+ + +Y++ E F F S+IR+ + R++DLLL+DD+QF+ GK Sbjct: 157 IGHLANLNRR---KALYVSGEQFTTDFISSIRNGQTEEFRSRYRDVDLLLLDDVQFIGGK 213 Query: 275 LIQHEFC--HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q E C H N L +S +Q+V +AD PP L L R+RSR + G+++ + D + R Sbjct: 214 E-QTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRFEWGLTIEIEPPDEKTR 272 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-----FRHSFAPI 387 +L+ + S E +N + L ++A+ V + REL+G+ N+++ R + P Sbjct: 273 LELLQLKAEQSGTE-----LNMDTLEYLAQAVKHNIRELEGSLNRVLAYARLLRAAITPD 327 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 L A ++ S V E +R +I V++ + I +LL R + RQ AM+ Sbjct: 328 LAARALSDIGSRPVR--ENSPLRPGNIISAVSQVFQIPTTELLGAARDKDTALARQFAMF 385 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 + K S EIG+ G R +TV HA K++ LE L+ Sbjct: 386 ILKQQNSASLVEIGQSLGGRSASTVSHACDKIQLELENSTFLR 428 >gi|317010101|gb|ADU80681.1| chromosomal replication initiation protein [Helicobacter pylori India7] Length = 455 Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 182/341 (53%), Gaps = 22/341 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNDLHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEEKNPFVLSLREEIK 438 >gi|254780033|ref|YP_003058140.1| chromosomal replication initiation protein [Helicobacter pylori B38] gi|254001946|emb|CAX30203.1| Chromosomal replication initiator protein DnaA [Helicobacter pylori B38] Length = 455 Score = 153 bits (386), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 114/459 (24%), Positives = 221/459 (48%), Gaps = 45/459 (9%) Query: 46 LKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K +V P Y + +LK++ + +I P L WI ++ + ++ + Sbjct: 15 VKQKVSPIEYENCLSQLKYNPNASKSDIAFFYAPNMLLCNWITAKHGALLKEILSQNKVG 74 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 + L SV + + +P I + NTN + + + Sbjct: 75 MH----LAHSVDV----RIEVAPKIQINAQANTNYK-------------AIKTSVKDSYT 113 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++++ Sbjct: 114 FENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHALEK 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF H Sbjct: 169 HK--KVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEFFH 226 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + + Sbjct: 227 TFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKCQL 286 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHL 400 +Q P EEV+ ++A+ ++ + R+++GA ++ + API +A +L L Sbjct: 287 NQIILP-----EEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLEDL 340 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP + Sbjct: 341 -QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLSL 399 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + +DH+++ V+KMLE + ++L++E++ Sbjct: 400 AQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 438 >gi|332674313|gb|AEE71130.1| DNA-directed DNA replication initiator protein [Helicobacter pylori 83] Length = 455 Score = 152 bits (385), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 182/341 (53%), Gaps = 22/341 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKISSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEEKSPFVLSLREEIK 438 >gi|297567993|ref|YP_003689337.1| chromosomal replication initiator protein DnaA [Desulfurivibrio alkaliphilus AHT2] gi|296923908|gb|ADH84718.1| chromosomal replication initiator protein DnaA [Desulfurivibrio alkaliphilus AHT2] Length = 451 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 124/464 (26%), Positives = 225/464 (48%), Gaps = 28/464 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L++Q+ V+ W + L+ + ++ L+ P F +W+ + Y + Sbjct: 2 IWPEVRKILQHQLPESVFNLWIEPLRCLAEDDQVLELAGPDRFFCSWVADHYHAAM---- 57 Query: 98 QEEHSRIQGVEILVRSVALPSV--EKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 QE R++ + +R P + + TA + + ++ + + P G+ I Sbjct: 58 QEALQRLEKPGVGIRFRVDPELVSDDTAGAGADGRVGKEQLRLPQMP--KGRPRIRT--- 112 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L R+ F F+ G SN +A TA ++IA + V FI+A GLGK+HL A Sbjct: 113 --LHPRYTFDEFMVGESNALAFTACEAIAAGGAEAEPCV-----FINAGTGLGKSHLAHA 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-RNIDLLLIDDMQFLQGK 274 +A+ P+ R+ LT + IR N K+ R D+LL++D+Q L G+ Sbjct: 166 VAHHLYNHSPSTRLCCLTTQQLTAELVRHIRSNTMDQFKEKFQRQCDVLLVEDVQTLSGR 225 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q E ++ LL++ ++V+ P E+ LD +RSRL G+ + D + R Sbjct: 226 GKTQVELAEAVDCLLENGRRVLFTGAVGPREIPDLDDGVRSRLASGLVTSINPPDMQTRR 285 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-TAEI 392 I++ + A KL ++EE++ +A V R L+ A L + + T + Sbjct: 286 LIIQRKAAYH-----KLALDEEMVEFLAEKVRGDVRRLESAIVGLKAKANLRKSQPTMAM 340 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E+++ +V G+ + E I+ VA + +S +L S R + V PRQV+MYL++ + Sbjct: 341 VKEVVATVVG-GDGGGLSAEAIRDFVAAQFQVSVGELQSKSRKKDVAFPRQVSMYLARKL 399 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 T + IG+ F +RDH+TV+H++R + + + + +++ +VE L Sbjct: 400 TDEALAGIGKAF-NRDHSTVVHSIRVITEAVARNGSVRGQVEHL 442 >gi|217031880|ref|ZP_03437383.1| hypothetical protein HPB128_199g88 [Helicobacter pylori B128] gi|298735501|ref|YP_003728022.1| chromosomal replication initiator protein DnaA [Helicobacter pylori B8] gi|216946532|gb|EEC25134.1| hypothetical protein HPB128_199g88 [Helicobacter pylori B128] gi|298354686|emb|CBI65558.1| chromosomal replication initiator protein DnaA [Helicobacter pylori B8] Length = 457 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/328 (28%), Positives = 174/328 (53%), Gaps = 17/328 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 114 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 168 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 169 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEF 226 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 227 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 286 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++Q + + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 287 QLNQ-----ITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLE 340 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 341 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 399 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD 486 + + +DH+++ V+KMLE + Sbjct: 400 SLAQFLDLKDHSSISKMYSSVKKMLEEE 427 >gi|308183628|ref|YP_003927755.1| chromosomal replication initiation protein [Helicobacter pylori PeCan4] gi|308065813|gb|ADO07705.1| chromosomal replication initiation protein [Helicobacter pylori PeCan4] Length = 455 Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/328 (28%), Positives = 174/328 (53%), Gaps = 17/328 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD 486 + + +DH+++ V+KMLE + Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEE 425 >gi|317011662|gb|ADU85409.1| chromosomal replication initiation protein [Helicobacter pylori SouthAfrica7] Length = 455 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 96/347 (27%), Positives = 182/347 (52%), Gaps = 22/347 (6%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S + + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L A Sbjct: 106 SSVKDSYTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNA 160 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N ++++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK Sbjct: 161 IGNHALEKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKP 218 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 ++ EF H N L + KQ+V +DR P + L+ R++SR + G++ + D E + S Sbjct: 219 KLEEEFFHTFNELHANNKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKIMPPDLETKLS 278 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEI 392 I+K + ++Q P EEV+ ++A+ ++ + R+++GA ++ + API + Sbjct: 279 IVKQKCQLNQIILP-----EEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-NLNL 332 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A +L L + +E+I VA+ N+ +++ + R + V R++ +Y +++ Sbjct: 333 AKTVLEDL-QKDHAEGSSLENILLAVAQSLNLKSSEIKKSSRQKNVALARKLVVYFARLY 391 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 TP + + +DH+++ V+KMLE + ++L++E++ Sbjct: 392 TPNPTLSLAQFLDLKDHSSISKMYSSVKKMLEEEKNPFILSLREEIK 438 >gi|317182731|dbj|BAJ60515.1| chromosomal replication initiation protein [Helicobacter pylori F57] Length = 455 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 180/340 (52%), Gaps = 20/340 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSH 399 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ S + +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNATIDLNLAKTVLED 339 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 340 L-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLS 398 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 399 LAQFLDLKDHSSISKMYSSVKKMLEEEKSPFVLSLREEIK 438 >gi|315585910|gb|ADU40291.1| DNA-directed DNA replication initiator protein [Helicobacter pylori 35A] Length = 455 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 180/340 (52%), Gaps = 20/340 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSH 399 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ S + +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNASLMNATIDLNLAKTVLED 339 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 340 L-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLS 398 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 399 LAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 438 >gi|2909713|gb|AAC12963.1| DnaA [Lactococcus lactis subsp. cremoris MG1363] Length = 272 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/275 (34%), Positives = 161/275 (58%), Gaps = 10/275 (3%) Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 + Y+++E F+ + +A R N + +++ RN+DLLL+DD+QF K ++EF + N+L Sbjct: 1 IKYVSSENFVNDYVNATRKNQMESFENTYRNLDLLLLDDVQFFSDKEGTKNEFFNTFNAL 60 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 D Q+V +DR P EL +L+ R+ SR G++ + DYE R +IL + + E Sbjct: 61 YDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMAIL-----LIKSES 115 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPILTAEIADELLSHLVNTGE 405 L E L ++A + ++ REL+GA N++ F R + I+ E A + L L N + Sbjct: 116 SHLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGISIVDIETASQALRSLKNATQ 175 Query: 406 TK--KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + I+ IQ VA +Y+IS +DL+ +R + + PRQ+AMYL + + S P IG Sbjct: 176 QSLSNLTIKKIQDEVANYYHISFSDLVGPKRPKEIAFPRQIAMYLVRELLGTSLPAIGTA 235 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 FG RDHTTV++A +++ ++ D+ ++K+++ +KR Sbjct: 236 FGGRDHTTVMYAYKQISDKMKNDMDVQKDIDSIKR 270 >gi|308062788|gb|ADO04676.1| chromosomal replication initiation protein [Helicobacter pylori Cuz20] Length = 455 Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 94/341 (27%), Positives = 182/341 (53%), Gaps = 22/341 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 285 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKISSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 SLAQFLDLKDHSSISKMHSSVKKMLEEEKSPFILSLREEIK 438 >gi|229816226|ref|ZP_04446536.1| hypothetical protein COLINT_03276 [Collinsella intestinalis DSM 13280] gi|229808234|gb|EEP44026.1| hypothetical protein COLINT_03276 [Collinsella intestinalis DSM 13280] Length = 588 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 110/369 (29%), Positives = 190/369 (51%), Gaps = 32/369 (8%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 +++++ F++F+ G NR A +A A ++ + LFI+ + GLGKTHLL AI Sbjct: 222 INAKYTFASFVAGDENRHAFNSAMRFA---AYAEEPQQCPSLFIYGNSGLGKTHLLFAIR 278 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFAS---AIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 N K +P +RV Y ++ ++ + + A R L +++ R+ D+L+IDD+Q + GK Sbjct: 279 NYLAKEKPYIRVKYANSQAYLDDYMNELGAQRGPGNLIMRE-YRDADILIIDDVQNIVGK 337 Query: 275 LIQHEFC-HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF L++S + K++ A+DR P +L ++D R+ SR G+ + +EM++ Sbjct: 338 QASVEFFFQLVDSFIREGKKIALASDRAPKDL-AMDERLTSRFSSGMLCLVSEPGFEMKY 396 Query: 334 SILKNRLA--ISQKED-PKLNIN---------------EEVLMHVARTVTTSGRELDG-- 373 ILK I Q ED +N++ +E L H+A + R L+ Sbjct: 397 VILKRYYESIIQQDEDLTSMNVDTSLLQALPSSEGRLTDEHLRHMAEISGNNIRSLESFC 456 Query: 374 --AFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 N R + LTAE D + NT K + ++ +QR+V + Y++S +L+ Sbjct: 457 ERCANLSSEREAAGAELTAEDIDRVAKIYFNTAH-KIIHVDTVQRVVEEFYHVSHEELVG 515 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 RR + R VA+YL+ + + P IG FG RDH+TVL++++ VE + D + + Sbjct: 516 KRRTANIAFARHVAVYLANNLCEMTTPAIGAEFGGRDHSTVLNSLKVVENKMREDRRIVE 575 Query: 492 EVELLKRLI 500 +++ LK I Sbjct: 576 DIQNLKNTI 584 >gi|13235412|emb|CAC33612.1| DnaD protein [Rickettsia montanensis] Length = 255 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 91/257 (35%), Positives = 145/257 (56%), Gaps = 16/257 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y WF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNRWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVIELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLD 289 K Q EF H N+L+D Sbjct: 239 KDSTQEEFFHTFNTLID 255 >gi|15646137|ref|NP_208319.1| chromosomal replication initiation protein [Helicobacter pylori 26695] gi|14194658|sp|O26057|DNAA_HELPY RecName: Full=Chromosomal replication initiator protein DnaA gi|2314709|gb|AAD08568.1| chromosomal replication initiator protein (dnaA) [Helicobacter pylori 26695] Length = 457 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 182/343 (53%), Gaps = 26/343 (7%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 114 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 168 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 169 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEF 226 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 227 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 286 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADEL 396 ++Q + + EEV+ ++A+ ++ + R+++GA ++ A ++ A I A + Sbjct: 287 QLNQ-----ITLPEEVMEYIAQHISDNIRQMEGAIIKISVN---ANLMNASIDLNLAKTV 338 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 LEDL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNP 397 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 TLSLAQFLDLKDHSSISKMYSGVKKMLEEEKSPFVLSLREEIK 440 >gi|210135692|ref|YP_002302131.1| chromosomal replication initiation protein [Helicobacter pylori P12] gi|226735815|sp|B6JP23|DNAA_HELP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|210133660|gb|ACJ08651.1| chromosomal replication initiator protein [Helicobacter pylori P12] Length = 455 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 93/341 (27%), Positives = 182/341 (53%), Gaps = 22/341 (6%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 112 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 166 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 167 EKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKAKYRHCDFFLLDDAQFLQGKPKLEEEF 224 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + + E + SI+K + Sbjct: 225 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPNLETKLSIVKQKC 284 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 ++Q + + EEV+ ++A+ ++ + R+++GA ++ + API +A +L Sbjct: 285 QLNQ-----ITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNAPI-DLNLAKTVLE 338 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 339 DL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTL 397 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 398 SLAQFLDLKDHSSISKMYSSVKKMLEEEKNPFILSLREEIK 438 >gi|301633565|gb|ADK87119.1| chromosomal replication initiator protein DnaA [Mycoplasma pneumoniae FH] Length = 439 Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 110/354 (31%), Positives = 169/354 (47%), Gaps = 40/354 (11%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L F F F+ G NR A I+E ++ PLFI+ GLGKTHLLQA Sbjct: 99 SGLSKNFTFKNFVVGDGNRRVYEAGVRISETQDADFS-----PLFIYGETGLGKTHLLQA 153 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAI----RDNCALNLKDSLRNIDLLLIDDMQFL 271 I N PN +V Y+ + F +A +D LK + ++DLLLIDD Q Sbjct: 154 IGNDKFFHFPNAKVKYVVSSDFAQEVVNAFYQKDKDQGIEKLKAAYESLDLLLIDDTQIF 213 Query: 272 QGKLIQHEFCH-LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K E + N+L+ KQ+V +D+ P EL ++DPR+ SR + G+ + + H+ Sbjct: 214 GKKEKTLEILFSIFNNLVSKGKQIVFVSDKTPDELANIDPRMVSRFKSGLLLKIEKHN-- 271 Query: 331 MRFSILKNRLAISQKE-DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 S L LA+ KE DP + I E A+ R L+G +L+F + T Sbjct: 272 --LSSLCEILAVKLKEKDPNIQITNEAREKAAQISGNDVRSLNGIATKLLFY-----VKT 324 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRM-------------VAKHYNISRNDLLSNRRVR 436 + +L+N K++ E+ ++ V + +N+ + +LS R Sbjct: 325 TK------QNLINNDNLKEILFEEFEKFHKKSFDPYLLIENVCRRFNVPVDSVLSENRKA 378 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 +VR R V YL + F +IG+ F R+H+TV+ AV++V KM+E D +L+ Sbjct: 379 ELVRVRDVCNYLLREKYKMQFQQIGKIFK-RNHSTVVAAVKRVAKMIEKDDSLQ 431 >gi|302341445|ref|YP_003805974.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] gi|301638058|gb|ADK83380.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] Length = 442 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 126/476 (26%), Positives = 226/476 (47%), Gaps = 54/476 (11%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + I+ +L + P+ + W L+ + L+ P F + W+++ +L + +L + Sbjct: 6 WEILRRQLGEVIDPEEFKLWIDPLRPVESDGPGLVLACPNAFHRTWLRDHHLPRLRQLAR 65 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG--- 155 + + + +V P++ + Q P G Sbjct: 66 QIDPEFK----VTLAVLPGGQPGGQGRPAVAR-----------------QLTLPSLGLDH 104 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+SR+ F +I G N A AA+++A S L++ + GLGK+HL QA Sbjct: 105 PQLNSRYRFENYIAGGGNEYACAAAKAMANGQSFFGGA-----LYLVSGTGLGKSHLTQA 159 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK 274 I + + + RV YLTAE F + SA+R KD R D+LL++++ FL GK Sbjct: 160 IGHHVLDGERPCRVSYLTAEDFANQMISALRAKRMEQFKDRFRRGCDVLLLEEVPFLAGK 219 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q E + L++L ++ K+++ ++PP+++++L R+RSRL G V+VP+ D++ R Sbjct: 220 DKTQEELVYTLDALANAGKRIIFTGNQPPAQIKNLGRRLRSRLDGSVTVPIEPPDHQTRV 279 Query: 334 SILKN---RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PI- 387 IL++ RL + +P L +A ++ R L A N + R + P+ Sbjct: 280 RILRSEAQRLGVVSPVEP--------LELLAEAISGDVRRLISALNGMAARSALTGRPMD 331 Query: 388 --LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 L AE+A +L + E +++ E I+ VA+ Y + L R + V PR +A Sbjct: 332 LALAAEVAGQLAT------ELRRLSPERIRDEVARAYGLEPALLSGKSRKKEVTGPRNIA 385 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + T S IG F +RDH+TV++ V K++++L D L ++ +++ + Sbjct: 386 MYLCRRHTDSSLKSIGGLF-NRDHSTVMYGVDKIDRLLAQDQKLAGQLRYIEQRLG 440 >gi|12045329|ref|NP_073140.1| chromosomal replication initiation protein [Mycoplasma genitalium G37] gi|1352276|sp|P35888|DNAA_MYCGE RecName: Full=Chromosomal replication initiator protein DnaA gi|3845066|gb|AAC72490.1| chromosomal replication initiator protein DnaA [Mycoplasma genitalium G37] gi|166079050|gb|ABY79668.1| chromosomal replication initiator protein DnaA [synthetic Mycoplasma genitalium JCVI-1.0] Length = 437 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 107/352 (30%), Positives = 168/352 (47%), Gaps = 36/352 (10%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L + F F+ N+ A A +AE + ++ PLFI+ GLGKTHLLQ Sbjct: 98 NSGLSKNYTFQNFVISEGNKRAYEAGVRLAETQDNEFS-----PLFIYGETGLGKTHLLQ 152 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAI--RDNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI N + PN RV Y+ + F A RD LK + N+DL+LIDD Q Sbjct: 153 AIGNEKFRNFPNARVKYVVSSDFAQEVVDAFYQRDKGIEKLKKNYENLDLVLIDDTQIFG 212 Query: 273 GKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K E ++ N+L+ + KQ+V +D+ P EL +D R+ SR + G+ + + H+ Sbjct: 213 RKEKTLEILFNIFNNLVLNKKQIVLVSDKAPDELIDIDARMISRFKSGLLLKIEKHNLSS 272 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 IL +L +++DP + I E A+ R L+G +L+F Sbjct: 273 LCEILTVKL---KEKDPNIQITNEARHDAAQISGNDVRALNGIATKLLF----------- 318 Query: 392 IADELLSHLVNTGETKKMRIEDIQRM-------------VAKHYNISRNDLLSNRRVRTV 438 A +L+NT K++ E+ ++ V + +N+ + +LS R + Sbjct: 319 FAKTSKQNLINTENLKEILFEEFEKFHKKSFDPYLLIENVCRRFNVPMDSVLSENRKAEL 378 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 VR R V YL + F +IG+ F R H++VL AV++V KM+E D +L+ Sbjct: 379 VRVRDVCNYLLRQKYNMQFQQIGKIFK-RSHSSVLMAVKRVAKMIENDSSLR 429 >gi|258404913|ref|YP_003197655.1| chromosomal replication initiator protein DnaA [Desulfohalobium retbaense DSM 5692] gi|257797140|gb|ACV68077.1| chromosomal replication initiator protein DnaA [Desulfohalobium retbaense DSM 5692] Length = 460 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 131/477 (27%), Positives = 227/477 (47%), Gaps = 53/477 (11%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+N++ P ++ W + L+ V + L P F+ +W+++RYL+ I E I Sbjct: 12 LENRIKPGIFKIWIKPLE-GQVQEGSLELVAPNAFVASWVRDRYLQDIRSAATE----IL 66 Query: 106 GV--EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS--- 160 G E+ +++ + SV SPS P T+ + +P Q S P+D Sbjct: 67 GFSPEVTLKASSDASVTAPPPSPS----EPNTTHHTATPA--ASQQRSEHLALPIDYSHV 120 Query: 161 ------RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 R F FI G N++A A ++ T+ +F+ + GLGKTHLL Sbjct: 121 PQPQQWRHSFDDFIIGQCNQLAHAACTNLCR------KTLPAESVFLSSGPGLGKTHLLH 174 Query: 215 AIANASIKRQPN--LRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFL 271 A+ + + Q N +RV Y+TAE F + A+++ KD R N+D+LL++D+ F Sbjct: 175 AVGHYYAQNQKNSQVRVGYVTAEEFANQMIMALKNRTIGTFKDRYRKNLDVLLLEDVHFF 234 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 QGK IQ E + L ++VV ++ P EL +D ++ S G P+ D + Sbjct: 235 QGKEKIQEELLSTIKFLEQHGRKVVFSSSFLPKELNKVDNQLTSLFCSGFIAPIDAPDAD 294 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 MR I++ ++ + +++I EV VA + + R+L+ + + A +L Sbjct: 295 MRLKIIQ-----AKAQRFQIHIPTEVQEMVAENIHSDIRQLESCIKNMALK---ARLLNQ 346 Query: 391 EI----ADELLSHLVNTGETKKMRIEDIQR---MVAKHYNISRNDLLSNRRVRTVVRPRQ 443 I A+E+L H + + + DI ++ +++N+S L S R R +V R Sbjct: 347 GINQALAEEVLGHFTE----RCLSVPDIDSIISLICQNFNLSGEKLRSKSRKRQIVVARN 402 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE-VELLKRL 499 A YL++ T S +IG RF R H+TVL + +E+ ++ D + ++ V + +RL Sbjct: 403 TAFYLARKHTDLSLKDIGTRFN-RRHSTVLKGITNLEREIQRDSQVGRQAVRIEERL 458 >gi|984962|gb|AAA85543.1| dnaA [Mycobacterium tuberculosis] Length = 260 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/267 (34%), Positives = 157/267 (58%), Gaps = 10/267 (3%) Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD Sbjct: 1 GKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDD 60 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + Sbjct: 61 IQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQP 120 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-- 384 + E R +IL+ + +Q E +L + ++VL +AR + + L+GA ++ S Sbjct: 121 PELETRIAILRKK---AQME--RLXVPDDVLELIARXIEXNIXVLEGALIRVTPFASLNK 175 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 PI A +A+ +L L+ T ++ I A++++ + L + R + + RQ+ Sbjct: 176 TPIDKA-LAEIVLRDLIADANTMQISAATIMAATAEYFDTTVGRLRGPGKTRALAQSRQI 234 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTT 471 AMYL + +T P+IG+ FG RDHTT Sbjct: 235 AMYLCRELTDLPLPKIGQAFG-RDHTT 260 >gi|15612482|ref|NP_224135.1| chromosomal replication initiation protein [Helicobacter pylori J99] gi|14194709|sp|Q9ZJ96|DNAA_HELPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|4156038|gb|AAD06996.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Helicobacter pylori J99] Length = 457 Score = 150 bits (380), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 181/340 (53%), Gaps = 20/340 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 114 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 168 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 169 EKHK--KVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 226 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 227 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 286 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSH 399 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ V + + +A +L Sbjct: 287 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLED 341 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 342 L-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLS 400 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 401 LAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 440 >gi|13508425|ref|NP_110375.1| chromosomal replication initiation protein [Mycoplasma pneumoniae M129] gi|2494136|sp|Q59549|DNAA_MYCPN RecName: Full=Chromosomal replication initiator protein DnaA gi|1209520|gb|AAC43648.1| DnaA protein [Mycoplasma pneumoniae] gi|1673817|gb|AAB95804.1| chromosomal replication initiator protein DnaA [Mycoplasma pneumoniae M129] Length = 439 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 109/354 (30%), Positives = 169/354 (47%), Gaps = 40/354 (11%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L F F F+ G NR A I+E ++ PLFI+ GLGKTHLLQA Sbjct: 99 SGLSKNFTFKNFVVGDGNRRVYEAGVRISETQDADFS-----PLFIYGETGLGKTHLLQA 153 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAI----RDNCALNLKDSLRNIDLLLIDDMQFL 271 I N PN +V Y+ + F +A +D LK + ++DLLLIDD Q Sbjct: 154 IGNDKFFHFPNAKVKYVVSSDFAQEVVNAFYQKEKDQGIEKLKAAYESLDLLLIDDTQIF 213 Query: 272 QGKLIQHEFCH-LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K E + N+L+ KQ+V +D+ P EL ++DPR+ SR + G+ + + H+ Sbjct: 214 GKKEKTLEILFSIFNNLVSKGKQIVFVSDKTPDELANIDPRMVSRFKSGLLLKIEKHN-- 271 Query: 331 MRFSILKNRLAISQKE-DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 S L LA+ KE DP + I E A+ R L+G +L+F + T Sbjct: 272 --LSSLCEILAVKLKEKDPNIQITNEAREKAAQISGNDVRSLNGIATKLLFY-----VKT 324 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRM-------------VAKHYNISRNDLLSNRRVR 436 + +L+N K++ E+ ++ V + +N+ + +LS R Sbjct: 325 TK------QNLINNDNLKEILFEEFEKFHKKSFDPYLLIENVCRRFNVPVDSVLSENRKA 378 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 +VR R V Y+ + F +IG+ F R+H+TV+ AV++V KM+E D +L+ Sbjct: 379 ELVRVRDVCNYILREKYKMQFQQIGKIFK-RNHSTVVAAVKRVAKMIEKDDSLQ 431 >gi|307638185|gb|ADN80635.1| Chromosomal replication initiator protein [Helicobacter pylori 908] gi|325996781|gb|ADZ52186.1| Chromosomal replication initiator protein [Helicobacter pylori 2018] gi|325998373|gb|ADZ50581.1| Chromosomal replication initiator protein [Helicobacter pylori 2017] Length = 457 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 181/340 (53%), Gaps = 20/340 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 114 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 168 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 169 EKHK--KVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 226 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 227 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 286 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSH 399 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ V + + +A +L Sbjct: 287 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLED 341 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 342 L-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLS 400 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 401 LAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 440 >gi|317014942|gb|ADU82378.1| chromosomal replication initiation protein [Helicobacter pylori Gambia94/24] Length = 457 Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 181/340 (53%), Gaps = 20/340 (5%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ GS N A+ +A+ D+ Y NP+ + GLGKTH+L AI N ++ Sbjct: 114 YTFENFVVGSCNNTVYEIAKKVAQSDTPPY-----NPVLFYGGTGLGKTHILNAIGNHAL 168 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 ++ +VV +T+E F+ F + + + K R+ D L+DD QFLQGK ++ EF Sbjct: 169 EKHK--KVVLVTSEDFLTDFLKHLDNKNMDSFKKKYRHCDFFLLDDAQFLQGKPKLEEEF 226 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N L ++KQ+V +DR P + L+ R++SR + G++ + D E + SI+K + Sbjct: 227 FHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFEWGITAKVMPPDLETKLSIVKQKC 286 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSH 399 ++ K+ + EEV+ ++A+ ++ + R+++GA ++ V + + +A +L Sbjct: 287 QLN-----KITLPEEVMEYIAQHISDNIRQMEGAIIKISVNANLMNATIDLNLAKTVLED 341 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L + +E+I VA+ N+ +++ + R + V R++ +Y +++ TP Sbjct: 342 L-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQKNVALARKLVVYFARLYTPNPTLS 400 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETD-----ITLKKEVE 494 + + +DH+++ V+KMLE + ++L++E++ Sbjct: 401 LAQFLDLKDHSSISKMYSSVKKMLEEEKSPFILSLREEIK 440 >gi|303327619|ref|ZP_07358060.1| ATPase involved in DNA replication initiation [Desulfovibrio sp. 3_1_syn3] gi|302862559|gb|EFL85492.1| ATPase involved in DNA replication initiation [Desulfovibrio sp. 3_1_syn3] Length = 482 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 121/456 (26%), Positives = 210/456 (46%), Gaps = 23/456 (5%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 +S LK + V+ W L+ + + L+ P F+ W+++R L T+ +E Sbjct: 29 ISENLKKMLDSGVFKVWIAPLRAR-LEDGALCLAAPNAFMAGWLESRMLCTL----REAA 83 Query: 102 SRIQGV--EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 + + G+ E + + + ++ A+ + + + + L ++P F Sbjct: 84 APVLGLAPEAVDLRIEIAGNDRNAAPEAASTADLAARVLPRRQASLPMPAVAPAFRREAA 143 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 R+ F F+ G SN VA+ AAQ + T LF++++ GLGKTHL QA+ + Sbjct: 144 WRYRFEDFVVGPSNSVAVAAAQDVCRSGGDVRT------LFVNSASGLGKTHLAQAVGQS 197 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 + RV YLTAE F RF +A+R + K LR +D+LL++D+ F QGK +Q Sbjct: 198 LSRNSSGARVAYLTAEEFASRFVAALRSHDVEAFKGRLRELDVLLLEDVHFFQGKEKMQD 257 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 ++ +L +V+ + P EL+ +D ++ S G+ +G D EMR IL Sbjct: 258 MALAVVKNLQARGGRVIFTSSFSPRELQRVDSQLVSHFCSGILTNMGRPDEEMRRHILTR 317 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELL 397 + Q P + V +A + R+++ N L+F+ L ++A E+L Sbjct: 318 KARSFQVLLP-----DSVCDLLASRLRGDVRQMESCLNSLIFKARLLNCGLNLDLALEVL 372 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + G + I R+V + Y + L S R R V R YL++ T S Sbjct: 373 NQY--AGVECGPDLPTIIRLVCESYGLEERQLCSRSRRRECVLGRNTVYYLARKHTELSL 430 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 EIG F +R H+TV+ + VE+ L + +L +++ Sbjct: 431 EEIGGTF-NRRHSTVIKGITSVERELSKESSLGRQI 465 >gi|24753761|gb|AAN64009.1|AF434658_6 chromosomal replication initiation protein A [Leptospira interrogans] Length = 443 Score = 150 bits (379), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 128/472 (27%), Positives = 220/472 (46%), Gaps = 48/472 (10%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 LE ++ + + ++ P Y + LK ++ + P+ +K ++ +Y Sbjct: 3 LEEKLNLVWNKILEEVSKKISPQYYERFIDTLKLETINSEKCRIIAPSATIKTHVERKYQ 62 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP--SITKLSPINTNISKSPIILGKQ 148 I E VEIL+ E A+SP SI + S + +P Sbjct: 63 SIIENAILETCGDKIPVEILI--------ETKAASPLQSILEKSFDQKDFQFNP------ 108 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + F TFI G NR+A TAA+ +NPL+I SVG+G Sbjct: 109 ------------DYTFETFIVGDCNRLAYTAAKECVR------KPAEINPLYIFGSVGVG 150 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALNLKDSLRNIDLLLID 266 KTHLL AI + K+ P V Y+ FM +RFA R+ + K ++ + L++D Sbjct: 151 KTHLLHAIGSELTKKDPWKTVCYVDISSFMNEFRFALQSRE-LIESFKIKYQSYNCLIVD 209 Query: 267 DMQFL--QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 D+Q L + Q EF L N L + +Q+V A+DRP SEL ++ R++SR GV + Sbjct: 210 DIQLLSTNAEKTQDEFFALFNFLFERKRQIVIASDRPSSEL-AIHERLKSRFVTGVQADI 268 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHS 383 D E+R I+ + I L ++E++L +A + R L GA N + +++ S Sbjct: 269 QYPDREIRKGIVTHHSKIMD-----LGLSEDILDFLADQIEEDTRLLLGALNDIYLYKKS 323 Query: 384 FAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 ++ + L + E++ + + + + + I VAK +N++ +++ R + +V PR Sbjct: 324 YSLLFLNLDKVKEIVKNRLYRKKNIEFSHDRIIEAVAKEFNLNTAEIMGKSRKKELVIPR 383 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + YL + + ++GR F + HTTV+H VRK E++L + ++ VE Sbjct: 384 HICFYLLHNVFNVNKSQVGRLFQTQ-HTTVIHGVRKTEELLSNNKEMRFLVE 434 >gi|139439857|ref|ZP_01773222.1| Hypothetical protein COLAER_02256 [Collinsella aerofaciens ATCC 25986] gi|133774785|gb|EBA38605.1| Hypothetical protein COLAER_02256 [Collinsella aerofaciens ATCC 25986] Length = 547 Score = 150 bits (378), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 108/373 (28%), Positives = 189/373 (50%), Gaps = 34/373 (9%) Query: 155 GSPL--DSRFVFSTFIEGSSNRVALTAAQSIAEV-DSHGYTTVRLNPLFIHASVGLGKTH 211 G+PL +S+F F F+ G N A +A A + D G T LFI+ GLGKTH Sbjct: 180 GAPLAANSKFTFENFVYGPENSHAYRSALKFAALADERGTCT----SLFIYGKSGLGKTH 235 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYF----MWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 LL AI N ++ P ++V Y ++ + M F + N + + +D+L+IDD Sbjct: 236 LLLAIKNELAEKSPEIKVKYANSQAYLDDLMTEFDRQKKSNAPI--MQAYHGVDVLIIDD 293 Query: 268 MQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +Q + GK + F L++ + + K+VV AADR P +L S+D R+ SR G+ + Sbjct: 294 IQNIIGKRASVDYFFQLMDEFIRNNKKVVIAADRAPKDL-SMDERLTSRFNAGMLCLVAE 352 Query: 327 HDYEMRFSILKNR-----LAISQKEDPKL---------NINEEVLMHVARTVTTSGRELD 372 YEM++ IL+ +A + D L ++ +E H+A T+ REL+ Sbjct: 353 PSYEMKYKILQRYYENTIVAAPEAGDDSLLAAYGGDGGHLTDEHFKHMAEVSGTNIRELE 412 Query: 373 G----AFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 + R LT + D + S +T KK+ ++ +Q ++ + Y ++ + Sbjct: 413 SFCERCAGEAGDREREGGELTFDDIDAIASQYFDTS-AKKINVQTVQSVIEEQYGVTHEE 471 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L+ RR + + R +A+YL+ M + +G FG+R+H+TV + +KV+KM++ D T Sbjct: 472 LIGPRRNANIAKARHIAIYLAIEMCEMTTTAVGAEFGNRNHSTVSTSYKKVQKMIQEDRT 531 Query: 489 LKKEVELLKRLIS 501 + ++++ L+ I+ Sbjct: 532 VTEDLKSLRDKIT 544 >gi|315453775|ref|YP_004074045.1| chromosomal replication initiator protein [Helicobacter felis ATCC 49179] gi|315132827|emb|CBY83455.1| chromosomal replication initiator protein [Helicobacter felis ATCC 49179] Length = 431 Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 109/357 (30%), Positives = 186/357 (52%), Gaps = 34/357 (9%) Query: 142 PIILGKQ--TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 P+++ K T++PVF F T + G+ N++A+ A +A S Y NP+ Sbjct: 87 PLMVAKNNPTLNPVFR--------FDTLVVGACNQMAVKIATQVAR-QSGVY-----NPV 132 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 VGLGKTHLL AI N + + + V+Y+TAE F+ + S + ++ R+ Sbjct: 133 LFFGGVGLGKTHLLNAIGNHACDQLKS--VLYVTAEQFLNDYVSGLNSRSMDKFQEKYRS 190 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 D LLIDD+QF GK +Q EF H N+L KQ+V +D+PP +++ L R+ SR + Sbjct: 191 CDYLLIDDVQFFAGKEKVQEEFFHTFNALHAQNKQIVITSDKPPKDIKGLAERLLSRFEM 250 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + E + +I++ + A Q E P +EVL ++A + + R+++G +L Sbjct: 251 GMLASVHPPTLETKLAIIEQKCAQDQIELP-----QEVLHYLASHLNENIRQIEGTLLRL 305 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMR-----IEDIQRMVAKHYNISRNDLLSNR 433 ++ A + I+ ++ +V ET K R +E I R+VA N+ + + SN Sbjct: 306 ---NATATLSHQPISLQMAQSVVQ--ETCKERAQEISLERILRVVASTLNLKPSQIQSNA 360 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 R R V ++ +YL++ +TP S I + G +DH+ V ++R ++K + D +K Sbjct: 361 RTRQVSLAKKSVIYLARQLTPNSSSVIAQFLGLKDHSAVSKSLRLIQKAMLEDTQIK 417 >gi|24212701|ref|NP_710182.1| chromosomal replication initiation protein A [Leptospira interrogans serovar Lai str. 56601] gi|45655915|ref|YP_000001.1| chromosomal replication initiator protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|61212641|sp|Q72WD6|DNAA_LEPIC RecName: Full=Chromosomal replication initiator protein DnaA gi|61212842|sp|Q8FA34|DNAA_LEPIN RecName: Full=Chromosomal replication initiator protein DnaA gi|24193332|gb|AAN47200.1| chromosomal replication initiation protein A [Leptospira interrogans serovar Lai str. 56601] gi|45599148|gb|AAS68638.1| chromosomal replication initiator protein [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 443 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 127/472 (26%), Positives = 220/472 (46%), Gaps = 48/472 (10%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 LE ++ + + ++ P Y + LK ++ + P+ +K ++ +Y Sbjct: 3 LEEKLNLVWNKILEEVSKKISPQYYERFIDTLKLETINSEKCTIIAPSATIKTHVERKYQ 62 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP--SITKLSPINTNISKSPIILGKQ 148 I E VEIL+ E A+SP SI + S + +P Sbjct: 63 SIIENAILETCGDKIPVEILI--------ETKAASPLQSILEKSFDQKDFQFNP------ 108 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + F TFI G NR+A TAA+ +NPL+I SVG+G Sbjct: 109 ------------DYTFETFIVGDCNRLAYTAAKECVR------KPAEINPLYIFGSVGVG 150 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALNLKDSLRNIDLLLID 266 KTHLL AI + K+ P V Y+ FM +RFA R+ + K ++ + L++D Sbjct: 151 KTHLLHAIGSELTKKDPWKTVCYVDISSFMNEFRFALQSRE-LIESFKIKYQSYNCLIVD 209 Query: 267 DMQFL--QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 D+Q L + Q EF L N L + +Q+V A+DRP SEL ++ R++SR GV + Sbjct: 210 DIQLLSTNAEKTQDEFFALFNFLFERKRQIVIASDRPSSEL-AIHERLKSRFVTGVQADI 268 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHS 383 D E+R I+ + I L ++E++L +A + R L GA N + +++ S Sbjct: 269 QYPDREIRKGIVTHHSKIMD-----LGLSEDILDFLADQIEEDTRLLLGALNDIYLYKKS 323 Query: 384 FAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 ++ + L + E++ + + + + + I VAK +N++ +++ R + ++ PR Sbjct: 324 YSLLFLNLDKVKEIVKNRLYRKKNIEFSHDRIIEAVAKEFNLNTAEIMGKSRKKELIIPR 383 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + YL + + ++GR F + HTTV+H VRK E++L + ++ VE Sbjct: 384 HICFYLLHNVFNVNKSQVGRLFQTQ-HTTVIHGVRKTEELLSNNKEMRFLVE 434 >gi|297621234|ref|YP_003709371.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] gi|297376535|gb|ADI38365.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] Length = 466 Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 112/360 (31%), Positives = 178/360 (49%), Gaps = 31/360 (8%) Query: 148 QTISPVFG---SPLDSRFVFSTFIEGSSNRVA------LTAAQSIA-EVDSHGYTTVRLN 197 + I P F LD F F FI SN +A T I+ +V S+ N Sbjct: 100 KNIPPAFTLAFDELDPLFTFDHFIPSESNLLAHKLLFKTTNYDPISSQVVSNPSELASFN 159 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 P+F+ G GKTHLL A A+A + + +Y+ +E F SAIR + + Sbjct: 160 PIFLFGGKGTGKTHLLMATAHAI--NCSHKKALYVRSETFTVHVVSAIRAGEMSLFRQAY 217 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D+LLIDD+ K Q E H N+L + KQ++ +A+ P EL+ ++PR+ SR Sbjct: 218 RSVDVLLIDDVHLFSKKWATQEELFHTFNALHLAGKQIILSANCAPQELQHIEPRLISRF 277 Query: 317 QGGVSVPLG-LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+ +PL L +MR I + A + PK+ EE L+ + + T S + A Sbjct: 278 EWGIVLPLNPLPKEDMRKVIQRKAKAFDTQLHPKV---EEFLLEMFSSTTNS---IAAAL 331 Query: 376 NQLVFRHSF---------APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 L+ RH API T ++A LL L+ + E I ++VA+++ I + Sbjct: 332 ESLLMRHHLRMREQKKASAPI-TVQLAKHLLKDLIEKESLSALTPEKIIQIVAEYFGICK 390 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+LS + R V PRQ+AMY + + ++G FG RDH+TV+ +++ V+ L+ + Sbjct: 391 QDILSKNQKREYVVPRQLAMYFCRQKLKIPYTKLGAVFG-RDHSTVISSIKTVQSQLDEN 449 >gi|317153893|ref|YP_004121941.1| chromosomal replication initiator protein DnaA [Desulfovibrio aespoeensis Aspo-2] gi|316944144|gb|ADU63195.1| chromosomal replication initiator protein DnaA [Desulfovibrio aespoeensis Aspo-2] Length = 451 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 127/466 (27%), Positives = 222/466 (47%), Gaps = 44/466 (9%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + + L+ + P ++A W + L V + LS P +F+ W+++R L+ I +E Sbjct: 9 IRTSLEKSLNPGLFAVWIKPLD-GVVEGGRLTLSAPNDFVANWVRDRLLQVI----REAA 63 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP--------IILGKQTISPV 153 + + G + + VA ++EK A ++P+ ++ P I+ G + I PV Sbjct: 64 AEVMGGDPKITIVA--NLEKAAKP-----VAPVGRAVAAEPRATHLGLPIVEGPRPI-PV 115 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + RF F F+ G SN +A A++S+ + + + LF+ + GLGKTHLL Sbjct: 116 H----NWRFSFDDFVVGPSNELACAASKSLCD------SAFSSDHLFLSSGPGLGKTHLL 165 Query: 214 QAIANASIK--RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQF 270 ++ N + + NL+V L++E F R AI+ K R N+D+LL++D+ F Sbjct: 166 HSVGNQLCRAANRKNLKVACLSSEDFATRMVLAIKSRQVDVFKAQFRENLDVLLLEDVHF 225 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 QGK +Q E L +L + +V+ + P E +D R+ SR G + D Sbjct: 226 FQGKEKMQEELLCTLTALRERGCKVLLTSSFMPKEFSGVDNRLVSRFCSGFLAHINRPDL 285 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R R+ + + ++++ EV +A +TT R+L+ + LV + + Sbjct: 286 ETR-----RRIVLEKARKLQVSVPVEVSELLAERITTDIRQLESCLSNLVLKARLLNRAV 340 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E+L + +I + K Y++S ++L S R R VV R A YL Sbjct: 341 TLNLAWEVLDNYAVYNSAPDFF--NIVEFICKSYDLSEDELKSKSRKRQVVLARNTAFYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 ++ T S +IG + G R H+TVL + KVE+ + L +++E Sbjct: 399 ARKHTELSLKDIGDKLG-RRHSTVLKGITKVEREISLQTPLGRQIE 443 >gi|148926820|ref|ZP_01810499.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8486] gi|145844545|gb|EDK21652.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8486] Length = 383 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 104/397 (26%), Positives = 202/397 (50%), Gaps = 44/397 (11%) Query: 45 RLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I ++ Sbjct: 9 NLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFYE---- 64 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 +Q + ++ S ++ S I +I+ I + TI L+ F Sbjct: 65 -VQSGNKAIINIQAQSAKQNNKSTKI--------DIAH---IKAQSTI-------LNPSF 105 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ NAS++ Sbjct: 106 TFESFVVGDSNKYAYGACKAITHKDKLGKL---YNPIFVYGPTGLGKTHLLQAVGNASLE 162 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEF 280 +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL GK IQ EF Sbjct: 163 MGK--KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFL-GKTDKIQEEF 219 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I++ + Sbjct: 220 FFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKC 279 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHL 400 + +N++ +++ ++A ++ + RE++G ++ +++A IL EI EL + Sbjct: 280 EFND-----INLSNDIINYIATSLGDNIREIEGI---IISLNAYATILGQEITLELAKSV 331 Query: 401 VNTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRR 434 + +K + I+DI +V K +NI +D+ SN++ Sbjct: 332 MKDHIKEKKENITIDDILSLVCKEFNIKPSDVKSNKK 368 >gi|328954615|ref|YP_004371948.1| chromosomal replication initiator protein DnaA [Coriobacterium glomerans PW2] gi|328454939|gb|AEB06133.1| chromosomal replication initiator protein DnaA [Coriobacterium glomerans PW2] Length = 591 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 111/374 (29%), Positives = 193/374 (51%), Gaps = 38/374 (10%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 P++S+F F F+ G N+ A ++ A + YT+ LFI+ + GLGKTHLL Sbjct: 222 PVNSKFTFENFVYGEENKQAYQSSLRFAAFAEEPGSYTS-----LFIYGNSGLGKTHLLL 276 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFAS--AIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI N + +P +RV Y ++ ++ F + AI+ + D+L+IDD+Q + Sbjct: 277 AIENYLAETKPYMRVKYANSQAYIDDFINEVAIQKTDGHAILRDYHAADILIIDDIQNII 336 Query: 273 GKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK + F L++ + K+VV A+DR P +L +D R+ SR GG+ + +EM Sbjct: 337 GKTASIDYFFRLMDEFIRDNKKVVIASDRAPKKL-GMDERLTSRFNGGMLCLVSEPGFEM 395 Query: 332 RFSILK-----NRLA------ISQKEDPKL---------NINEEVLMHVARTVTTSGREL 371 +++ILK N LA + D L ++++ L H+A T+ REL Sbjct: 396 KYAILKRYYENNVLASDAAPLTRETTDVSLLSSIYTGGGHLSDAQLRHMAEISGTNIREL 455 Query: 372 DGAFNQLVFRHSF-----APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 + +F + S+ LT E + + +T KK+ I+ +Q +V + Y+++ Sbjct: 456 E-SFCERCACDSYEKEQVGEELTGEDIEAIADEYFDTAR-KKIHIDTVQSVVEEFYHVTH 513 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 +++ RR + R VA+YLS M + P +G +FG RDH+TVL++++ +EK ++ D Sbjct: 514 EEMIGPRRTANIAFARHVAVYLSNDMCDTTTPAVGAQFGGRDHSTVLNSMKVIEKKMKGD 573 Query: 487 ITLKKEVELLKRLI 500 L +E++ L+ I Sbjct: 574 RALCEELQQLRNKI 587 >gi|116326856|ref|YP_796576.1| chromosomal replication initiator protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329803|ref|YP_799521.1| chromosomal replication initiator protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282421|sp|Q04WF7|DNAA_LEPBJ RecName: Full=Chromosomal replication initiator protein DnaA gi|122285293|sp|Q056V2|DNAA_LEPBL RecName: Full=Chromosomal replication initiator protein DnaA gi|116119600|gb|ABJ77643.1| Chromosomal replication initiator protein [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123492|gb|ABJ74763.1| Chromosomal replication initiator protein [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 437 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 125/459 (27%), Positives = 216/459 (47%), Gaps = 48/459 (10%) Query: 49 QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE 108 ++ P Y + LK ++ + P+ +K ++ +Y I E VE Sbjct: 15 KISPQYYERFIDTLKLETLNSEKCTIIAPSATIKTHVERKYQSIIENAILEACGDKIPVE 74 Query: 109 ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 IL+ + A SP+ + + KS ++ + + F TFI Sbjct: 75 ILIETKAT---------------SPLQSFLEKS---FDQKDFQ------FNPDYTFETFI 110 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G NR+A TAA+ +NPL++ SVG+GKTHLL AI + IK+ P Sbjct: 111 VGDCNRLAYTAAKECVR------KPAEINPLYLFGSVGVGKTHLLHAIGSELIKKDPWKT 164 Query: 229 VVYLTAEYFM--WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL--QGKLIQHEFCHLL 284 V Y+ FM +RFA R+ + K ++ + LL+DD+Q L + Q EF L Sbjct: 165 VCYIDISSFMNEFRFALQSRE-LIESFKIKYQSYNCLLVDDIQLLSTNAEKTQDEFFALF 223 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N L + +Q+V A+DRP SEL ++ R++SR GV + + E+R I+ + I Sbjct: 224 NFLFERKRQIVIASDRPSSEL-TIHERLKSRFVTGVQADIQYPNKEIRKGIVTSHSKIMD 282 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPI-LTAEIADELLSHLVN 402 L ++E+VL +A + R L GA N + +++ S++ + L + E++ + + Sbjct: 283 -----LGLSEDVLEFLADQIEEDTRLLLGALNDIYLYKKSYSLLFLNLDKVKEIVKNRLY 337 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + + + I VAK +N+ +++ R + ++ PR + YL + + ++GR Sbjct: 338 RKKNVEFSHDRIIESVAKEFNLDAAEIMGKSRKKELIIPRHICFYLLHNVFNVNKSQVGR 397 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 F + HTTV+H +RK E++L + KE+ L IS Sbjct: 398 LFQTQ-HTTVIHGLRKTEELLSDN----KEIRFLVERIS 431 >gi|291520346|emb|CBK75567.1| ATPase involved in DNA replication initiation [Butyrivibrio fibrisolvens 16/4] Length = 238 Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 79/213 (37%), Positives = 118/213 (55%), Gaps = 22/213 (10%) Query: 137 NISKSPII----LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 NI ++P +G TI+P +F F F+ G +NR A TAA ++AE Y Sbjct: 14 NIEEAPSFTEKKIGNSTINP--------KFTFDNFVVGRNNRFAQTAALAVAESPGEFY- 64 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---- 248 NPL+I+ GLGKTHL+QAI N + PN ++Y+T+E F +R N Sbjct: 65 ----NPLYIYGGPGLGKTHLMQAIGNYIENQNPNTHILYVTSEEFTNEVIENLRTNNNAS 120 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 +D R +D+L++DD+QF+ GK Q EF H N+L KQ+V ++D+PP ++E+ Sbjct: 121 AMQRFRDKYRTVDVLMVDDIQFIIGKESTQEEFFHTFNALHAMGKQIVISSDKPPKDMET 180 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 LD R +SR G+ +G DYE R +IL ++ Sbjct: 181 LDDRFKSRFDMGLMADIGYPDYETRMAILNKKI 213 >gi|289811521|ref|ZP_06542150.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 226 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 137/226 (60%), Gaps = 7/226 (3%) Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL Sbjct: 6 QEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL 65 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + E Sbjct: 66 -----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVRE 120 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 121 ALRDLLALQE-KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNH 179 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 180 SLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 225 >gi|322378946|ref|ZP_08053360.1| chromosomal replication initiation protein [Helicobacter suis HS1] gi|322379800|ref|ZP_08054097.1| chromosomal replication initiation protein [Helicobacter suis HS5] gi|321147768|gb|EFX42371.1| chromosomal replication initiation protein [Helicobacter suis HS5] gi|321148622|gb|EFX43108.1| chromosomal replication initiation protein [Helicobacter suis HS1] Length = 433 Score = 147 bits (370), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 99/334 (29%), Positives = 171/334 (51%), Gaps = 22/334 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F T + GS N +A+ A +A+ +S Y NP+ VGLGKTH+L AI Sbjct: 98 LNPAFTFDTLVVGSCNHLAIKVASQVAQ-NSGSY-----NPVLFFGGVGLGKTHILNAIG 151 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + R + V+Y+TAE F+ + + ++ +D R D LLIDD+QF GK ++ Sbjct: 152 NKACDRLQD--VLYVTAEQFLNDYVFRLGNHSMDKFQDKYRTRDYLLIDDVQFFGGKQMV 209 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L Q+V +D+PP +++ L R+ SR + G+ + E + +I+ Sbjct: 210 QEEFFHTFNALHSQGSQIVMTSDKPPRDIKGLADRLLSRFEMGMIASIQPPKLETKIAII 269 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + + ++ V+ ++A + R+++GA + R + +LT D Sbjct: 270 NQKCQFNH-----IRMDAPVVEYLASHTNENIRQIEGA----LLRLNATAMLTGVSIDLS 320 Query: 397 LSHLVNTGETKK----MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L V K+ + +E + R+VAK N+ +D+ +N R R V R++ +YL++I+ Sbjct: 321 LVEAVLKDTIKESLQEVSLEQVLRVVAKTLNLKPSDIRNNYRNRQVALARKLIIYLARIL 380 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 T S + + G +DH+ V A + V K + D Sbjct: 381 TNASTTALAQFLGMKDHSGVSKANKTVTKCMLED 414 >gi|210634752|ref|ZP_03298280.1| hypothetical protein COLSTE_02207 [Collinsella stercoris DSM 13279] gi|210158692|gb|EEA89663.1| hypothetical protein COLSTE_02207 [Collinsella stercoris DSM 13279] Length = 625 Score = 146 bits (368), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 191/370 (51%), Gaps = 34/370 (9%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 +++++ F +F+ G NR A +A A + + LFI+ + GLGKTHLL A+ Sbjct: 259 INAKYTFESFVAGDENRHAFNSAMRFA---AFAEEPGQCPSLFIYGNSGLGKTHLLFAVR 315 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAI---RDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 N K +P +RV Y ++ ++ + + + R +L +++ R+ D+L+IDD+Q + GK Sbjct: 316 NYLAKEKPYIRVKYANSQAYLDDYMNELGTQRGPGSLIMRE-YRDADILIIDDVQNIVGK 374 Query: 275 LIQHEFC-HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF L++S + K++ A+DR P +L ++D R+ SR G+ + +EM++ Sbjct: 375 QASVEFFFQLVDSFIREGKKIAFASDRAPKDL-AMDERLTSRFSRGMLCLVSEPGFEMKY 433 Query: 334 SILK----NRLAISQKEDPKLNIN---------------EEVLMHVARTVTTSGRELDGA 374 ILK N + S+ D LN++ +E L H+A + R L+ Sbjct: 434 VILKRYYENIINGSESLD-GLNVDTSLLSMLPEHEGHLTDEHLRHMAEISGNNIRNLESF 492 Query: 375 FNQLVF----RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 + R + L+AE DE NT K + I+ +QR+V + Y++S +L+ Sbjct: 493 CERCAGLAAEREAAGGELSAEDIDETAKTYFNTAR-KVIHIDTVQRVVEEFYHVSHEELI 551 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 RR ++ R VA+YL+ + + P IG FG RDH+TVL++++ VE + D + Sbjct: 552 GPRRTASIAFARHVAVYLANSLCEMTTPAIGAEFGGRDHSTVLNSLKVVENKMREDRRIC 611 Query: 491 KEVELLKRLI 500 ++++ LK I Sbjct: 612 EDLQNLKNTI 621 >gi|887655|emb|CAA82286.1| dnaA [Wolbachia sp.] Length = 186 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 76/192 (39%), Positives = 120/192 (62%), Gaps = 6/192 (3%) Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 1 EFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 60 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E L Sbjct: 61 KV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASETLI 115 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T +S P Sbjct: 116 DLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQKSLP 174 Query: 459 EIGRRFGDRDHT 470 +IGR FG RDHT Sbjct: 175 DIGRNFGGRDHT 186 >gi|332198657|gb|EGJ12740.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA41317] Length = 380 Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 127/229 (55%), Gaps = 12/229 (5%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 E R +IL+ S+ E N + L ++A ++ R+L+GA N + Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDI 327 >gi|282851872|ref|ZP_06261234.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 224-1] gi|282556979|gb|EFB62579.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 224-1] Length = 332 Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/218 (38%), Positives = 128/218 (58%), Gaps = 11/218 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 118 LNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + +P+ +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF K I Sbjct: 173 HQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFFSKKEGI 232 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL Sbjct: 233 QEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAIL 292 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 + + E L I++ L ++A V T+ REL+GA Sbjct: 293 RKK-----AETDGLAIDDSTLDYIASQVDTNIRELEGA 325 >gi|121587284|ref|ZP_01677057.1| chromosomal replication initiator protein DnaA [Vibrio cholerae 2740-80] gi|121548530|gb|EAX58586.1| chromosomal replication initiator protein DnaA [Vibrio cholerae 2740-80] Length = 213 Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 85/219 (38%), Positives = 137/219 (62%), Gaps = 9/219 (4%) Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + Sbjct: 1 NALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKK 55 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVN 402 ED ++++ +EV +A+ + ++ REL+GA N+++ +F PI T + E L L+ Sbjct: 56 AEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLA 114 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 E K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG Sbjct: 115 LQE-KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGD 173 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 174 AFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 212 >gi|78357363|ref|YP_388812.1| DnaA family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123754872|sp|Q30YX9|DNAA_DESDG RecName: Full=Chromosomal replication initiator protein DnaA gi|78219768|gb|ABB39117.1| DnaA family protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 461 Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 120/462 (25%), Positives = 217/462 (46%), Gaps = 42/462 (9%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L++ + P ++ W + L + + L P F+ +W+++R + I K + + Sbjct: 12 LRDNLNPGLFKVWIKPLAAEQA-GDSLRLVAPNAFVASWVRDRLMNEIEK----AAASVL 66 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD--SRFV 163 G V ++ + S E+ A++P P+ K P + + + G PL SR Sbjct: 67 GS---VPTITVVSGEEPAAAPR-----PVQVPAQKRPAA-ARTSGAEQMGLPLHYASRSA 117 Query: 164 --------FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 F F+ G SN++A A+Q I + + R + LF+ + GLGKTHLL A Sbjct: 118 DSIKWMHSFDEFVVGPSNQMAFAASQDICQ------QSFRSDTLFLSSDPGLGKTHLLHA 171 Query: 216 IAN--ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 + +I + RV YLTAE F R A++ K R++D+LL++D+ FLQG Sbjct: 172 VGQQLCNISNRTLPRVEYLTAEEFATRLICALKAKEVDRFKARYRDVDVLLLEDVHFLQG 231 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +Q E + +L +V+ ++ P +L LD ++ SR G+ + +E R Sbjct: 232 KQRMQDEVLSTVKALQSRGAKVLFSSSFAPKDLNDLDSQLTSRFCSGLLAVIEKPTFETR 291 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAE 391 IL+ + + + P E+V +A + R+++ L+ + +T + Sbjct: 292 KQILREKARLHHVQLP-----EQVADLLADNIRADVRQIESCLRNLLLKARLLNQQITMD 346 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E++ H + I+ I R + ++IS+ L S R R +V R A +L++ Sbjct: 347 MAWEIIGHYAKREAV--LDIDAIVRQICSGFDISKEQLQSRSRRRELVIARNTAFFLARK 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 T S EIG+RF +R H+TV+ + +E+ + + L ++V Sbjct: 405 HTDLSLEEIGKRF-NRKHSTVIKGIANIEREMNKETPLGRQV 445 >gi|256827819|ref|YP_003156547.1| chromosomal replication initiator protein DnaA [Desulfomicrobium baculatum DSM 4028] gi|256576995|gb|ACU88131.1| chromosomal replication initiator protein DnaA [Desulfomicrobium baculatum DSM 4028] Length = 449 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 127/460 (27%), Positives = 208/460 (45%), Gaps = 35/460 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 +S L+ + P Y W + L+ + ++ + L P +F+ W++ R L I E Sbjct: 8 ISLSLEKNLTPGHYQLWIKPLQ-GCLDNDTLVLCAPNSFVCTWVRERMLGKIKDAAAETL 66 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII--LGKQTISPVFGSPLD 159 +E+ P P+ I T P+ L QT+ + Sbjct: 67 GFTPTIELCSAQAEAPVAAPVQPVPA----RKIMTRQMGLPMAHALPTQTVQ-------N 115 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 R F FI G N +A A++S + D G + LF+ ++ GLGKTHL QAI + Sbjct: 116 WRHQFDDFIVGPCNNLAYVASRSFCQ-DVQGS-----DQLFLCSAPGLGKTHLAQAIG-S 168 Query: 220 SIKRQPN---LRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK- 274 I RQ N LRV YL+ E F + AI+ K R N+DLLL++D+ F QGK Sbjct: 169 EIARQTNRQHLRVCYLSGEEFASQLVMAIKAKAVEQFKARFRSNVDLLLLEDVHFFQGKE 228 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 +Q E + L SL + ++VV + P EL +D + SR G + D++ R Sbjct: 229 KMQDELLNTLKSLQNQGRRVVMTSTFLPRELSDIDSNLLSRFAQGFMAVIDKPDFQTRMG 288 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIA 393 I++ + SQ P V +A + T R+L+ ++ + + +T ++A Sbjct: 289 IIQAKAQASQVSMPG-----SVAELLAGRIKTDVRQLESCLKNIILKAKLLNMDITMDLA 343 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E+L + ++ + ++ I V + Y +DL S R R V R A YL++ T Sbjct: 344 WEILQNY--NLDSASIDLDKIISFVCQAYGFGFDDLRSKSRKRDRVIARNTAFYLARKHT 401 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 S +IGRRF +R H+TV+ + VE+ + +L ++ Sbjct: 402 ELSLMDIGRRF-NRKHSTVIKGIASVEQEVTRKTSLGNQL 440 >gi|87122918|ref|ZP_01078783.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MED121] gi|86161791|gb|EAQ63091.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MED121] Length = 376 Score = 144 bits (362), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 74/183 (40%), Positives = 110/183 (60%), Gaps = 6/183 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L++ F F F+EG SN++A AA +AE Y NPLFI+ VGLGKTHL+Q Sbjct: 174 GANLNNSFTFDNFVEGKSNQLAHAAALQVAENPGGAY-----NPLFIYGGVGLGKTHLMQ 228 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ ++ PN +VVYL +E F+ A++ N + K R++D LLIDD+QF GK Sbjct: 229 AVGTELMRHNPNAKVVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGK 288 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ DR P E++ L+ R++SR G++V + + E R Sbjct: 289 DRTQEEFFHTFNALLEGGQQMILTCDRYPKEIKGLEDRLKSRFGWGLTVAIEPPELETRV 348 Query: 334 SIL 336 +IL Sbjct: 349 AIL 351 >gi|544176|sp|P35907|DNAA_WOLSP RecName: Full=Chromosomal replication initiator protein DnaA gi|887654|emb|CAA82285.1| dnaA [Wolbachia sp.] Length = 186 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 75/192 (39%), Positives = 119/192 (61%), Gaps = 6/192 (3%) Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 1 EFFKTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQA 60 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLS 398 ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E L Sbjct: 61 KV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASETLI 115 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T +S P Sbjct: 116 DLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQKSLP 174 Query: 459 EIGRRFGDRDHT 470 +IGR FG RDHT Sbjct: 175 DIGRNFGGRDHT 186 >gi|47458836|ref|YP_015698.1| chromosomal replication initiation protein [Mycoplasma mobile 163K] gi|47458164|gb|AAT27487.1| chromosomal replication initiator protein [Mycoplasma mobile 163K] Length = 462 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 113/419 (26%), Positives = 210/419 (50%), Gaps = 46/419 (10%) Query: 91 ETITKLFQEEHSRI--QGV-EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 E IT +E + I G+ +I +R + + + K + + +I+K I+ K Sbjct: 57 EKITNFIKENYFYIIKDGIKQIFLRDLNVIYLTKQDKKTNFD-----SDDINKIDKIINK 111 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +T F + ++ +F F +E N+ L A +++ + + NP+FIH++ GL Sbjct: 112 KT---NFENFINKKFTFENLVECDFNKDVLRAIKNV-----YKQEEIIFNPIFIHSNSGL 163 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCAL-NLKDSLRNIDLLL 264 GKTHLL A+ N I ++ N VVY+ + + ++ +N L NLK +N D+LL Sbjct: 164 GKTHLLHALGN-EILKESNKSVVYINPDLITQKMVFLMQKGNNEELENLKSFYKNADVLL 222 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 DD+Q + K +I ++N+ L+ KQ+V +D+ P EL + R +R + G+++ Sbjct: 223 FDDVQNYKNKEVILKIVFDIINNSLEQQKQIVICSDKKPDELGGFEQRFITRFKSGLTLG 282 Query: 324 L---GLHDYE--MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 + ++D + ++F ++K +L + E EE VA+ + S R+L GA N++ Sbjct: 283 MKKASINDLKTILKFLVIKEKLNPDKWE-------EESYEFVAKNHSNSIRDLIGALNKV 335 Query: 379 VFRHS-------FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 F + ++ ++ I +L N E K I +V K+Y IS++DL+S Sbjct: 336 KFYSNDFAKNTPYSYLVLKNIFSDLKLDKNNINEDK------IISIVTKYYKISKSDLIS 389 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 R+ +V R + M+L + + +F +IG F +R H+ V+ ++ ++ + L D LK Sbjct: 390 KSRIPNIVLARDITMWLIRNVLELTFEKIGEIFNNRTHSAVITSINRINQKLINDANLK 448 >gi|24114988|ref|NP_709498.1| replication initiation protein DnaA [Shigella flexneri 2a str. 301] gi|24054240|gb|AAN45205.1| replication initiation protein DnaA [Shigella flexneri 2a str. 301] Length = 408 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 104/377 (27%), Positives = 185/377 (49%), Gaps = 26/377 (6%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRSVA-LPSVEKTASS 125 N + L P F+ W++++YL I L F + E+ + V P T++ Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNV 72 Query: 126 PSITKLSPINTNISKSPIILGKQTI----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 + +++ + G + P + S ++ + F F+EG SN++A AA Sbjct: 73 AAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAAC 132 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ Sbjct: 133 QVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDM 187 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRP 301 A+++N K R++D LLIDD+QF I+++ ++ +V Sbjct: 188 VKALQNNAIEEFKRYYRSVDALLIDDIQFFA---IKNDLRKSFSTPFTPCWKVSTDHSHL 244 Query: 302 PSELE---SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 S E ++ R++SR G++V + + E R +IL + + ++ + + EV Sbjct: 245 GSLFERDNGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAF 299 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ Sbjct: 300 FIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKT 358 Query: 418 VAKHYNISRNDLLSNRR 434 VA++Y I DLLS RR Sbjct: 359 VAEYYKIKVADLLSKRR 375 >gi|86169589|gb|ABC87034.1| chromosomal replication initiation protein [Leuconostoc mesenteroides subsp. cremoris] Length = 246 Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 89/253 (35%), Positives = 140/253 (55%), Gaps = 12/253 (4%) Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFL 271 QAI NA P+ + Y TAE F+ F ++R D K R++DLLL+DD+QF Sbjct: 1 QAIGNAYAVSTPSAHIKYATAEDFLNDFTESLRAGDGATAAFKQEYRSVDLLLVDDIQFW 60 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK +Q EF + N L + KQ+V +D+ P+E+ L R+ SR + G+ + + D Sbjct: 61 SGKEKVQEEFFNTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFEAGIMMDIQKPDLP 120 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPIL 388 R +IL+N E L+I +VL +A + ++ R L+GAF++ R+ P Sbjct: 121 TRVAILQNL-----SESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFEASLRYMNKPA- 174 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A ++L L N + K+ +E IQ++VA +Y + +DL S+ R + +V R VAMYL Sbjct: 175 TKETAQQILGDL-NINQGFKITVERIQQVVADYYMQTIDDLKSSSRKKDLVTARHVAMYL 233 Query: 449 SKIMTPRSFPEIG 461 ++ +T S P+IG Sbjct: 234 TRTLTNESLPDIG 246 >gi|26553453|ref|NP_757387.1| chromosomal replication initiation protein [Mycoplasma penetrans HF-2] gi|26453459|dbj|BAC43791.1| chromosomal replication initiator protein [Mycoplasma penetrans HF-2] Length = 452 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 122/435 (28%), Positives = 202/435 (46%), Gaps = 53/435 (12%) Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 V++ V +F+K N Y E +F+E S + V + T I K Sbjct: 45 VYILVKNDFVKEVFTNEYKE----IFEEYFSIKMNSNLNVFFI-------TKEEKDINKE 93 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 P I + P L I+P LDSRF F + G N+ A AA E +++ Sbjct: 94 LPT---IEEKPKTL---EINPT----LDSRFTFENYTIGMFNKNAFKAASLFLEENNNWK 143 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 T L I+ S GLGKTHLL A+ N ++ P ++Y+ E F+ + AI + Sbjct: 144 T------LLIYGSTGLGKTHLLHAVGNKFVQLFPQKNLMYIQTEDFLEKIYKAISEGGTK 197 Query: 252 --NLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESL 308 K+S N+DLLLIDD+QFL K +E F ++ N L K +V +D+ P+ L+ + Sbjct: 198 VEEFKNSFDNVDLLLIDDIQFLNNKEKLNEIFFNIFNRLNSKNKYIVMTSDKLPTSLK-I 256 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 D R+ SR G+S+ + D E I+ + S+ ++P N+ + +A + Sbjct: 257 DDRMISRFNSGLSIKINKPDTESIKKIIIENIKKSRIKNPFSNL---AIEFIALRFNSDI 313 Query: 369 RELDGAFNQLVF-------------RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQ 415 R L+G N++ F I+ ++ E++S+LV ++ + I Sbjct: 314 RTLEGVLNKIYFHLLDNVDPNEIINEEKIRSIIESDSDYEIVSNLV------QINPDIII 367 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + Y + + ++S +R + R+V MY+ + S+ EIG F +R+H TVL A Sbjct: 368 ESICLGYGVDKKSVISKKRNKQFSFVRKVCMYVLREKINLSYNEIGSFFSNRNHATVLEA 427 Query: 476 VRKVEKMLETDITLK 490 ++ VE +++D LK Sbjct: 428 IKDVETKVKSDEDLK 442 >gi|46446716|ref|YP_008081.1| chromosomal replication initiation protein [Candidatus Protochlamydia amoebophila UWE25] gi|61212966|sp|Q6MC93|DNAA1_PARUW RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|46400357|emb|CAF23806.1| putative chromosomal replication initiator protein, dnaA [Candidatus Protochlamydia amoebophila UWE25] Length = 451 Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 104/339 (30%), Positives = 171/339 (50%), Gaps = 20/339 (5%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV--RLNPLFIHASVGLGKTHLLQA 215 LD +F FI N ++ IA + ++T NP++++ S G GKTHLL + Sbjct: 106 LDPLCLFPYFISTEENLLSHQLLLEIAGLSPQIHSTQLGTFNPIYLYGSGGSGKTHLLMS 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGK 274 +A+A +K Q L+V+Y+ AE F +AIR + + RNID+LL+DD+ F + Sbjct: 166 LAHA-LKAQ-GLKVIYVRAETFTDHVVTAIRAGEMSVFRQAYRNIDVLLVDDVHVFSRKG 223 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG-LHDYEMRF 333 Q EF H N+L KQ++ A++ P +L+ ++PR+ SR + G+ +PL L EMR Sbjct: 224 ATQEEFFHTFNTLHLEGKQIILASECSPQDLQLIEPRLVSRFEWGIVLPLKPLRPGEMR- 282 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR------HSFAPI 387 L I++ + + ++ ++ T ++ + L LV R HS Sbjct: 283 -----NLLIAKAKALHFELPLKIADYLIETFKSNAKALIKGLEALVLRLHLDAKHSITA- 336 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 L+ LL L+ + + + I + VA+ Y I D+L + R PRQ+AM+ Sbjct: 337 LSVTATKALLIDLIEEEQKTAITPQKIIQAVAEQYGIRTEDILGKAQTRECALPRQLAMH 396 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 L + F +IG F RDH+TV+ +V+ ++K LE D Sbjct: 397 LCREQLKMPFMKIGDLFS-RDHSTVMSSVKSIQKSLEQD 434 >gi|220904107|ref|YP_002479419.1| Chromosomal replication initiator DnaA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868406|gb|ACL48741.1| Chromosomal replication initiator DnaA [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 482 Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 127/486 (26%), Positives = 221/486 (45%), Gaps = 49/486 (10%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETITKLFQEE 100 +S LK + ++ W L H+ +H +HL P ++ +++ L ++ +E Sbjct: 8 ISENLKKMLKSGLFKVWIAPL--HASVHEGGLHLVAPNAYVAGRLESMMLASL----REA 61 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSIT-KLSPINTNISK----------------SPI 143 + + G+E V + + E++A + + K S + + +P Sbjct: 62 AAPVLGLEPEQVDVRIEAAEQSADAEIVEEKQSSMQKKPADRADVSASAPSAVASFMAPA 121 Query: 144 ILGKQTISP-----VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 +Q P V+ + R+ F+ F+ G +N +A+ AAQ + S VR Sbjct: 122 RAPRQASLPLPSVAVYRDTQNWRYSFADFVVGPTNNMAVAAAQDV----SRSCGCVR--T 175 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LF+++S GLGKTHL QA+ A + N RV YLTAE F RF +A+R K R Sbjct: 176 LFVNSSSGLGKTHLAQAVGRAISEEGTNARVGYLTAEEFASRFVTALRAQDIEGFKARFR 235 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +D+LL++D+ F QGK +Q ++ SL + + + P EL+ +D ++ S Sbjct: 236 ELDVLLMEDVHFFQGKEKMQDMALAVVKSLQAKGGRAIFTSSFSPRELQKVDSQLVSHFC 295 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ +G +MR IL + Q P E V +A +T R+++ N Sbjct: 296 SGILTDMGRPTKDMRCDILGRKARTFQVLLP-----ESVCDLLASRLTGDVRQMESCLNS 350 Query: 378 LVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+F+ L ++A E+LS + I R+V + Y ++ L S R + Sbjct: 351 LIFKARLLNCGLNVDLAMEVLSQYADVACGPD--FSTILRLVCESYGLNERQLSSRSRRK 408 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT----LKKE 492 V R A YL++ T + EIG +F +R H+TV+ + +E+ L + T + + Sbjct: 409 ECVVGRNTAFYLARKHTEMTLEEIGEKF-NRRHSTVIKGITSLERELSRESTEGRRIARA 467 Query: 493 VELLKR 498 V L++R Sbjct: 468 VSLIER 473 >gi|87307796|ref|ZP_01089939.1| chromosomal replication initiator protein dnaA [Blastopirellula marina DSM 3645] gi|87289410|gb|EAQ81301.1| chromosomal replication initiator protein dnaA [Blastopirellula marina DSM 3645] Length = 460 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 105/338 (31%), Positives = 168/338 (49%), Gaps = 17/338 (5%) Query: 158 LDSRFVFSTF---IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L R FS+ I G N+ A TAA I +NPLFI G GKTHLL+ Sbjct: 113 LSRRRKFSSLEQLIVGECNKFASTAASMIMNRPGE------INPLFICGPQGSGKTHLLE 166 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 I + + + RVVYL+AE F F A+ + N + R+ DLL+IDD+QF GK Sbjct: 167 GIYGEARRSKKFERVVYLSAEQFTTYFLDALNGSGVANFRRKYRDADLLIIDDVQFFAGK 226 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 + E H L+S+ Q+V AAD+ P+EL +L P + +R GG+ + D + R Sbjct: 227 RATRTELLHTLDSITRRGGQIVLAADKRPTELSALGPELIARFSGGLVCEVHEIDRDTRR 286 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEI 392 + +L S+ +N + +L +A + R + GA N+L S + + Sbjct: 287 K-MAEKLCASR----DMNASRGLLDWLADHLPGDARLMSGAMNRLWATAMSLDRPVDVAM 341 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ L+ +V T +R+ DI+ +V K + I L S + R PR +AM+L++ Sbjct: 342 AENALADMVRAC-TPIVRLADIEEVVCKSFGIDAKILRSPSKSRKASHPRMLAMWLARKY 400 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 T + +I + F + H+TV+ A +KV + ++ +L+ Sbjct: 401 TKAALSDICQFFHRKSHSTVISAEKKVNQWIKESKSLQ 438 >gi|927586|gb|AAA85542.1| dnaA [Mycobacterium bovis] Length = 259 Score = 139 bits (351), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 89/266 (33%), Positives = 154/266 (57%), Gaps = 10/266 (3%) Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+LL+DD Sbjct: 1 GKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDD 60 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK IQ EF N+L ++ KQ+V ++DRPP +L +L+ R+R+ + G+ + Sbjct: 61 IQFIEGKEGIQEEFFRTFNTLHNANKQIVISSDRPPKQLATLEDRLRTDFEWGLITDVQP 120 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-- 384 + E R +IL+ + +Q E +L + + VL +A ++ + R L+ A ++ S Sbjct: 121 PELETRIAILRKK---AQXE--RLAVPDGVLELIASSIERNIRVLEXALIRVTPFASLNK 175 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 PI A +A+ +L L+ T ++ I A++++ + L + R + + RQ+ Sbjct: 176 TPIDKA-LAEIVLRDLIADASTMQISAATIMAATAEYFDTTVGRLRGPGKPRALAQSRQI 234 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHT 470 AMYL + +T S P+IG+ FG RDHT Sbjct: 235 AMYLCRELTDLSLPKIGQAFG-RDHT 259 >gi|317486879|ref|ZP_07945690.1| chromosomal replication initiator protein DnaA [Bilophila wadsworthia 3_1_6] gi|316921869|gb|EFV43144.1| chromosomal replication initiator protein DnaA [Bilophila wadsworthia 3_1_6] Length = 477 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 120/470 (25%), Positives = 214/470 (45%), Gaps = 36/470 (7%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L+N++ P Y W L + LS P F+ W+++R L I+ R Sbjct: 12 LQNRLNPGTYKVWVAPLTADLEGEGKIRLSAPNGFVATWVRDRLLNDISDAASAIFGRTM 71 Query: 106 GVEILV--------RSV---------ALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + ++ RSV P+ + + + + +S + L Sbjct: 72 EISVVAGNPPAKPSRSVPGRPAVSVEGEPAPARRPRTAPAPRPVAAPSLLSSAAEQLSLP 131 Query: 149 TISPVFGS-PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 PV S P + R+ F +F+ G +N +A AA+++A + ++ LF+ + GL Sbjct: 132 ITMPVNQSVPHNWRYAFDSFVVGPTNDMAYAAARNMAR------SGAAVDTLFLSSGPGL 185 Query: 208 GKTHLLQAIANA--SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GKTHL QA+ A + N +V YLTAE F F A++ K R++DLLL+ Sbjct: 186 GKTHLTQAVGQALCEASNRSNPKVEYLTAEEFSSCFVQALQSRTVDRFKGRFRDVDLLLL 245 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 +D+ FLQGK +Q E + SL + +VV + P EL ++D + SR G + Sbjct: 246 EDVHFLQGKEKMQDEVLSTIKSLQEKGSRVVLTSSFAPCELRNVDNSLVSRFCSGFLAGI 305 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS- 383 D R IL+ + +++ L +++ V+ + +T R+L+ + L+ + Sbjct: 306 EKPDASTRRRILQEK----ARQNNAL-LSDTVVDVLTERLTGDIRQLESCVHNLLLKAKL 360 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 ++ E+A E+L+ + + + ++ I R V + + +S L S R + +V R Sbjct: 361 LGCTISVEMAQEILAQY--SLDDPFVDVDSIIRKVCEGFGLSPEQLASRSRKQNLVVARN 418 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 YL++ T S +IG +F R H+TVL + VE+ L + L +++ Sbjct: 419 TIFYLARKHTELSLQDIGDKF-SRRHSTVLKGIASVERELRRESPLGRQI 467 >gi|329942825|ref|ZP_08291604.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|332287417|ref|YP_004422318.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|313847997|emb|CBY16994.1| chromosomal replication initiator protein [Chlamydophila psittaci RD1] gi|325506740|gb|ADZ18378.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|328815085|gb|EGF85074.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|328914665|gb|AEB55498.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci 6BC] Length = 460 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/324 (29%), Positives = 162/324 (50%), Gaps = 29/324 (8%) Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 T NP+++ G GKTHL+QA N + R+ +++Y+ ++ F SAIR Sbjct: 137 TGFPFNPIYLFGPEGSGKTHLMQAAVN--VLRESGGKILYVASDLFTEHLVSAIRSGEMQ 194 Query: 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + RN+D L I+D++ GK Q EF H NSL K +V ++ P++L++++ Sbjct: 195 RFRSFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLQTEGKLIVISSAYAPADLKAMEE 254 Query: 311 RIRSRLQGGVSVPL------GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 R+ SR + GV+VP+ GL + MR Q E + I + L + + Sbjct: 255 RLISRFEWGVAVPIHPLTKEGLRSFLMR-----------QTEQLSIRIEDSALDFLIHAL 303 Query: 365 TTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 ++ + L A N L R ++ + L + LL ++ E+ ++ I R VAK Sbjct: 304 SSDMKALLHALNLLSKRVAYKKLSQQLLYEDDIQSLLHDVLEAAESVRLTPSGIVRAVAK 363 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 +Y +S +L + R V PRQVAMYL + S+ IG F RDH+TV+ ++R + Sbjct: 364 YYGVSPESILGRSQSREYVLPRQVAMYLCRQKLSLSYVRIGDVFS-RDHSTVISSIRAIS 422 Query: 481 KMLET---DITLKKEVELLKRLIS 501 + +E DI++ + +L+K L S Sbjct: 423 QKVEEGGHDISIATQ-DLMKYLTS 445 >gi|193216431|ref|YP_001999673.1| chromosomal replication initiation protein [Mycoplasma arthritidis 158L3-1] gi|193001754|gb|ACF06969.1| chromosomal replication initiator protein DnaA [Mycoplasma arthritidis 158L3-1] Length = 454 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 100/340 (29%), Positives = 176/340 (51%), Gaps = 17/340 (5%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F + G N VAL AA+SI E D V +PLFI++S GLGKTHLL AI N +K+ Sbjct: 119 FENYAPGKFNSVALKAARSIYENDQ-----VVFSPLFIYSSSGLGKTHLLNAIGNELMKK 173 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLK---DSLRNIDLLLIDDMQ-FLQGKLIQHE 279 N Y+ + + +++ + D+L + D L+ DD+Q + + Sbjct: 174 --NKTCYYVNPDMLTRKLVEQLKNKNQEEINKIVDNLVSYDCLMFDDVQQYGNRESTLTV 231 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 +++N+L++ KQ++ AAD+ P +L + R +R GG++V + + SIL + Sbjct: 232 LFNIINTLMNDKKQIIIAADKRPEDLGGFEQRFITRFNGGLTVEIMQPEMSDVISILNFK 291 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA--DELL 397 L +P+L EE + +AR + S R L+GA N++ T ++A + Sbjct: 292 LK-QNNINPEL-WEEESMKFIARNFSNSIRSLEGAINRIKLFSQGDDFFTYDLATIKMIF 349 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 ++ ET + E I V+++Y I + +++ R +V R++AM+L K S Sbjct: 350 KNVSQIKET--ITPETIIDAVSRYYKIDKRKIVAKTRKEEIVMARRIAMWLVKNNFDYSL 407 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 IG+ FG++ H+TV+ +V+ ++K ++T+ LK +E +K Sbjct: 408 DSIGKMFGNQSHSTVIVSVKWIDKNIKTNSALKLAIEKIK 447 >gi|120602039|ref|YP_966439.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris DP4] gi|120562268|gb|ABM28012.1| DnaA family protein [Desulfovibrio vulgaris DP4] Length = 504 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 129/490 (26%), Positives = 222/490 (45%), Gaps = 52/490 (10%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI--- 93 SI+ + L+N + P ++ W L V + + + P F+ W+++R E I Sbjct: 16 SIWGQIQHILQNTLAPGLFKVWISPLA-GEVDGSTLRVEAPNEFVAGWVRDRLFEDIRTA 74 Query: 94 --------------------TKLFQEEHSRIQGVEILVRSVALPSV-EKTASSPSITKLS 132 R VE++ + +PSV + PS Sbjct: 75 ACGVIGDTVEVVVTAGAPAAAAPRPVLAPRPSVVEVVPTAAPVPSVVPAVEARPSGHAPR 134 Query: 133 PINTNISKSPIILG-KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 ++ ++ LG +PV S + RF F FI G +N +A AA+ + G Sbjct: 135 RLSAETQQAQEQLGLPLDWAPVPQSRTNWRFSFDDFIVGPNNELACAAARGMCR---DGL 191 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIA----NASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 T + LF+ + GLGKTHLL A+ +S + PN V YLTAE F R +A++ Sbjct: 192 MT---DTLFLSSGPGLGKTHLLHAVGRSLCESSNRSNPN--VAYLTAEEFASRLIAALKA 246 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 K R++D+LL++D+ FLQGK +Q E + +L ++V ++ +L+ Sbjct: 247 RDVERFKARYRDVDVLLLEDVHFLQGKEKMQDEVLATVKALQSRGSRIVFSSSFAARDLK 306 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 ++D ++ SR G + D++ R IL+ + I Q P + V +A ++T Sbjct: 307 NVDNQLVSRFCSGFLAGIERPDFDTRRRILREKARIYQVMLP-----DNVTDLLAERIST 361 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYN 423 R+++ + L+ + A +L +I+ E+ ++ ET ++ E I RMV + + Sbjct: 362 DVRQIESCLHNLILK---AKLLNRQISLEMAFEIIGNYAQAET-QLDFEGIVRMVCEGFG 417 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +S L S R R V R A L++ T S EIG RF +R H+TVL + +E+ + Sbjct: 418 LSPEQLNSRSRKREYVVARNAAYLLARKHTDLSLKEIGDRF-NRRHSTVLKGITALEREM 476 Query: 484 ETDITLKKEV 493 + L ++V Sbjct: 477 NRETPLGRQV 486 >gi|269122801|ref|YP_003305378.1| Chromosomal replication initiator DnaA [Streptobacillus moniliformis DSM 12112] gi|268314127|gb|ACZ00501.1| Chromosomal replication initiator DnaA [Streptobacillus moniliformis DSM 12112] Length = 441 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 97/339 (28%), Positives = 174/339 (51%), Gaps = 27/339 (7%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +F F+ ++ G +N A +I + + +PL I+ GLGKTHL QAI Sbjct: 101 LNKKFTFNNYVIGDNNLFAYKLGMAILD------GKLSNSPLMIYGDSGLGKTHLAQAIG 154 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ---GK 274 N I++ P +V Y T+ F + + ++ KD ++D+L++DD+QF + GK Sbjct: 155 NEMIEKNPESKVFYTTSTEFSNELIKSFSERTTISFKDKYADLDMLIVDDIQFFENIFGK 214 Query: 275 ---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 IQ EF + N+L + K ++ +D+ P EL +++ R+ SRL G V L + D Sbjct: 215 GDDKIQKEFYNAFNTLHMANKPIILISDKYPEELTNVEARLISRLVSGALVELKMPD--- 271 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 + + + + +++E++ +A + T+ REL+G N +V R + + Sbjct: 272 --KTSRISIIKTIITKENIPMDQELMYFIADELETNIRELEGFVNTIVARAKLMNEVVNK 329 Query: 392 --IADELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 I DEL ++ KK I + I V+ +YNI ++++L R +VR R + Y Sbjct: 330 KMIIDELNKKII----RKKCSITSDKILDTVSVYYNIEKSEILGKSRKAEIVRARDASRY 385 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 L + + EIG+ FG DHT+++ A+ K+ +++ET+ Sbjct: 386 LLTNILKITLGEIGKMFG-SDHTSIVKALEKI-RLMETE 422 >gi|311234387|gb|ADP87241.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris RCH1] Length = 504 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 129/490 (26%), Positives = 222/490 (45%), Gaps = 52/490 (10%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI--- 93 SI+ + L+N + P ++ W L V + + + P F+ W+++R E I Sbjct: 16 SIWGQIQHILQNTLAPGLFKVWISPLA-GEVDGSTLRVEAPNEFVAGWVRDRLFEDIRTA 74 Query: 94 --------------------TKLFQEEHSRIQGVEILVRSVALPSV-EKTASSPSITKLS 132 R VE++ + +PSV + PS Sbjct: 75 ACGVIGDTVEVVVTAGAPAAAAPRPVLAPRPAVVEVVPTAAPVPSVVPAVEARPSGHAPR 134 Query: 133 PINTNISKSPIILG-KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 ++ ++ LG +PV S + RF F FI G +N +A AA+ + G Sbjct: 135 RLSAETQQAQEQLGLPLDWAPVPQSRTNWRFSFDDFIVGPNNELACAAARGMCR---DGL 191 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIA----NASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 T + LF+ + GLGKTHLL A+ +S + PN V YLTAE F R +A++ Sbjct: 192 MT---DTLFLSSGPGLGKTHLLHAVGRSLCESSNRSNPN--VAYLTAEEFASRLIAALKA 246 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 K R++D+LL++D+ FLQGK +Q E + +L ++V ++ +L+ Sbjct: 247 RDVERFKARYRDVDVLLLEDVHFLQGKEKMQDEVLATVKALQSRGSRIVFSSSFAARDLK 306 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 ++D ++ SR G + D++ R IL+ + I Q P + V +A ++T Sbjct: 307 NVDNQLVSRFCSGFLAGIERPDFDTRRRILREKARIYQVMLP-----DNVTDLLAERIST 361 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYN 423 R+++ + L+ + A +L +I+ E+ ++ ET ++ E I RMV + + Sbjct: 362 DVRQIESCLHNLILK---AKLLNRQISLEMAFEIIGNYAQAET-QLDFEGIVRMVCEGFG 417 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +S L S R R V R A L++ T S EIG RF +R H+TVL + +E+ + Sbjct: 418 LSPEQLNSRSRKREYVVARNAAYLLARKHTDLSLKEIGDRF-NRRHSTVLKGITALEREM 476 Query: 484 ETDITLKKEV 493 + L ++V Sbjct: 477 NRETPLGRQV 486 >gi|46580657|ref|YP_011465.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. Hildenborough] gi|71151796|sp|Q729U6|DNAA_DESVH RecName: Full=Chromosomal replication initiator protein DnaA gi|46450076|gb|AAS96725.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. Hildenborough] Length = 491 Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 129/490 (26%), Positives = 222/490 (45%), Gaps = 52/490 (10%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI--- 93 SI+ + L+N + P ++ W L V + + + P F+ W+++R E I Sbjct: 3 SIWGQIQHILQNTLAPGLFKVWISPLA-GEVDGSTLRVEAPNEFVAGWVRDRLFEDIRTA 61 Query: 94 --------------------TKLFQEEHSRIQGVEILVRSVALPSV-EKTASSPSITKLS 132 R VE++ + +PSV + PS Sbjct: 62 ACGVIGDTVEVVVTAGAPAAAAPRPVLAPRPAVVEVVPTAAPVPSVVPAVEARPSGHAPR 121 Query: 133 PINTNISKSPIILG-KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 ++ ++ LG +PV S + RF F FI G +N +A AA+ + G Sbjct: 122 RLSAETQQAQEQLGLPLDWAPVPQSRTNWRFSFDDFIVGPNNELACAAARGMCR---DGL 178 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIA----NASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 T + LF+ + GLGKTHLL A+ +S + PN V YLTAE F R +A++ Sbjct: 179 MT---DTLFLSSGPGLGKTHLLHAVGRSLCESSNRSNPN--VAYLTAEEFASRLIAALKA 233 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 K R++D+LL++D+ FLQGK +Q E + +L ++V ++ +L+ Sbjct: 234 RDVERFKARYRDVDVLLLEDVHFLQGKEKMQDEVLATVKALQSRGSRIVFSSSFAARDLK 293 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 ++D ++ SR G + D++ R IL+ + I Q P + V +A ++T Sbjct: 294 NVDNQLVSRFCSGFLAGIERPDFDTRRRILREKARIYQVMLP-----DNVTDLLAERIST 348 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT---GETKKMRIEDIQRMVAKHYN 423 R+++ + L+ + A +L +I+ E+ ++ ET ++ E I RMV + + Sbjct: 349 DVRQIESCLHNLILK---AKLLNRQISLEMAFEIIGNYAQAET-QLDFEGIVRMVCEGFG 404 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +S L S R R V R A L++ T S EIG RF +R H+TVL + +E+ + Sbjct: 405 LSPEQLNSRSRKREYVVARNAAYLLARKHTDLSLKEIGDRF-NRRHSTVLKGITALEREM 463 Query: 484 ETDITLKKEV 493 + L ++V Sbjct: 464 NRETPLGRQV 473 >gi|218885110|ref|YP_002434431.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226735802|sp|B8DN19|DNAA_DESVM RecName: Full=Chromosomal replication initiator protein DnaA gi|218756064|gb|ACL06963.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 498 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 127/497 (25%), Positives = 218/497 (43%), Gaps = 57/497 (11%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK- 95 SI+ + + L+ + P ++ W L V +++ L P F+ AW+++R L+ I + Sbjct: 3 SIWGQIQNILEKSLNPGLFKVWISPLAAE-VQDDVLRLVAPNEFVAAWVRDRLLDDIVQA 61 Query: 96 -----------------------------LFQEEHSRIQGVEILVRSVALPSVEKTASSP 126 + + G + +P+V+ +++ Sbjct: 62 ATTVLGSAPTVVVDAAPQGAGSLSPRMGRAGASASAAVPGANAADGTQPVPAVQISSAVQ 121 Query: 127 SITKLSPINTNISKS----PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 ++ S + P LG P L+ RF F +F+ G +N +A A++ Sbjct: 122 AVAARSASGVGARAAHVAQPSQLGLPLDMPAPNRALNWRFSFDSFVVGPNNELAFAASRG 181 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA----NASIKRQPNLRVVYLTAEYFM 238 I T+ + LF+ + GLGKTHL+QA+ AS + P RV YLTAE F Sbjct: 182 ICR------ETLSADTLFLSSGPGLGKTHLMQAVGRALCEASNRAAP--RVEYLTAEEFA 233 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 R +A++ K R++D+LL++D+ FLQGK +Q E + +L +VV + Sbjct: 234 TRLIAALKAREVDRFKARYRDVDVLLLEDVHFLQGKERMQDEVLATVKALKSRGSRVVLS 293 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 + +L++LD ++ SR G + +E R IL + + Q P + V Sbjct: 294 SSFAARDLKNLDTQLVSRFCSGFLAHIDKPGFETRRRILCEKARLHQVMLP-----DNVT 348 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A + T R+++ + LV + ++ E+A E+L H + M E I R Sbjct: 349 DLLADRIRTDVRQIESCLHNLVLKAKLLNRQISMEMAWEVLGHYAQ--QEVVMDFEGIVR 406 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 V + + IS L S R R V R YL++ T S EIG RF R H+TVL + Sbjct: 407 KVCEGFGISPKQLNSRSRKREYVVARNSVFYLARKHTDLSLKEIGDRF-SRRHSTVLKGI 465 Query: 477 RKVEKMLETDITLKKEV 493 +E+ + + L ++V Sbjct: 466 TSIEREMSRETPLGRQV 482 >gi|166154461|ref|YP_001654579.1| chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|166155336|ref|YP_001653591.1| chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335720|ref|ZP_07223964.1| chromosomal replication initiation protein [Chlamydia trachomatis L2tet1] gi|165930449|emb|CAP03942.1| Chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|165931324|emb|CAP06896.1| Chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 456 Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 114/445 (25%), Positives = 195/445 (43%), Gaps = 34/445 (7%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 + ++G D W + LK ++L +F W EEH R + Sbjct: 12 EKEIGVDTVNKWLRSLKVLCFDACNLYLEAKDSFQVTWF-------------EEHIRHKV 58 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 L+ + P + S T K+ K +G +D F+ Sbjct: 59 KASLINNNGKPIRVRVTSLDKSTPFKDTQIQQEKTAYFTMK------YGD-IDPNMSFAN 111 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ N + + Q A+V G NP+++ GKTHL+QA R+ Sbjct: 112 FLVTPENDLPVRILQEFAKVSEQG-KGFPFNPIYLFGPESSGKTHLMQAAVGG--LREAG 168 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 ++ +Y+T+E F SAIR + RN++ L I+D++ L GK Q EF H N Sbjct: 169 VKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEFFHTFN 228 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 SL K +V ++ P +L++++ R+ SR + G+S+P+ E S L+ R+ Sbjct: 229 SLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLTREGLKSFLERRI----- 283 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLV 401 E + I E L + + +++ + L A L R ++ + L + LL ++ Sbjct: 284 EKLNIRIEETALDFLIQALSSHVKSLLHALTTLAKRVAYKKLSHQMLYQGDIEALLHDVL 343 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E+ ++ I R A++Y +S +L + R V PRQVAM+L + S+ +IG Sbjct: 344 QAAESIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCRQKLSLSYVKIG 403 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETD 486 F RDH+TV+ ++R + + LE D Sbjct: 404 EVFS-RDHSTVISSIRAISQKLEED 427 >gi|258406588|ref|YP_003199330.1| Chromosomal replication initiator DnaA domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257798815|gb|ACV69752.1| Chromosomal replication initiator DnaA domain protein [Desulfohalobium retbaense DSM 5692] Length = 451 Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 125/468 (26%), Positives = 207/468 (44%), Gaps = 52/468 (11%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 + +K + + +IV S L WF L F +V L + F A Sbjct: 1 MSANKPVWHLPAHELKSIVRSHLAQTRSETEIRRWFDPLDF-TVRSQPFTLVI--GFPHA 57 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 + + ++ F++ + G +R A P + ++ ++ ++P Sbjct: 58 FFHDPFIAAFQTDFEQAVADTLGSATALR-YACPQPGGSTTAQHVSLVAP---------- 106 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 ++ P GS DS + F F+ N +A+ Y NPL + Sbjct: 107 ---RKHTPPTNGS--DS-YTFENFLTNKKNYFPYASAREAIAAPGKKY-----NPLVLSG 155 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 G GKTHLL+A+A A R P +++Y T + + A D + SL LL Sbjct: 156 GSGTGKTHLLKAMAQAFRDRFPEQKILYFTVDDLHTFYKEAGGDMA----RSSLIASHLL 211 Query: 264 LIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+Q LQ +Q E + N+ + + Q+ A E L+P + SRL+ G+ V Sbjct: 212 LIDDLQSLQLYNYLQTELLLIFNAQYEQSGQLAFACRGKLPECGFLEPTLLSRLEWGLMV 271 Query: 323 PLGLHDYEMRFSIL-----KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 L D E+R L K RL +S++ L + + R L G + Sbjct: 272 HLKTPDLELRVQYLHTANQKKRLGLSRRHILLLGQHFKDF-----------RYLQGVITK 320 Query: 378 LVFRHSFAPILTAEIADELLSHLVNTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRR 434 L ++ +++ E+ DE L ++ + ++ K + E I +VA H+ I+ DL RR Sbjct: 321 LC---AYKELISPELNDEALFQIIGSLDSSKPTAVSPEHIFTIVATHFGITYQDLRGARR 377 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 +R++V RQ+AM L + S+P+IGR FG RDHTTV+H ++KV+K+ Sbjct: 378 LRSIVFARQIAMALCRSELGLSYPQIGRLFGGRDHTTVMHGIKKVQKL 425 >gi|303249148|ref|ZP_07335388.1| Chromosomal replication initiator DnaA [Desulfovibrio fructosovorans JJ] gi|302489473|gb|EFL49420.1| Chromosomal replication initiator DnaA [Desulfovibrio fructosovorans JJ] Length = 454 Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 120/472 (25%), Positives = 215/472 (45%), Gaps = 40/472 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++I+ L+ + P +Y W + L + + ++ L+ P F+ AW++ R +++ Sbjct: 2 DTIWPKTKMLLEKTLSPGLYNLWIKPLAARA-RNGVLELTAPNAFVAAWVRERLADSVA- 59 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS-PVF 154 E + + G + P V T + + ++ + PI ++++ P+ Sbjct: 60 ---EAAAVVMG--------SRPRVVVTEKTIATGGVAAAGVSQGPRPIRAAAKSLTLPMT 108 Query: 155 GSPLD-----SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 D RF + F+ G N +A A++ I ++ T+ LFI ++ GLGK Sbjct: 109 PKAPDLAGDRFRFSYDEFVVGPCNELAYVASRGICDL------TLSAEQLFISSAPGLGK 162 Query: 210 THLLQAIAN----ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLL 264 THL+QA+ + LRV YL+AE F R A++ K + R N+D+LL Sbjct: 163 THLIQAMGRQLSFCGDQEHKKLRVAYLSAEEFANRLVMALKTKQVERFKAAFRENVDVLL 222 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 ++D+ F + K IQ E + L +L ++V + P +L LD ++ SR+ G Sbjct: 223 LEDIHFFRDKPRIQDELLNTLKALQSRGCRLVFTSSFLPKDLTGLDAQLLSRINSGFLTV 282 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R IL+ + A+ Q P +EV M +A + R+L+ L + Sbjct: 283 IDKPDRETRKRILECKAAVHQVLLP-----DEVSMLLADRLCADVRQLESCLQNLALKAR 337 Query: 384 FAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 ++ ++A ++L H + + ++DI V Y +S L+S R R V R Sbjct: 338 LLNCGISVDLAWDVLRHY--DVAARPLTLDDIVSYVCDVYRLSPEQLISKSRKRQYVLAR 395 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 A L++ T S +IG RF R H+TV+ + +E+ L L +E+E Sbjct: 396 NTAFLLARQHTDMSLADIGNRFN-RRHSTVVKGITNIERHLSLRTPLGRELE 446 >gi|255348609|ref|ZP_05380616.1| chromosomal replication initiation protein [Chlamydia trachomatis 70] gi|255503149|ref|ZP_05381539.1| chromosomal replication initiation protein [Chlamydia trachomatis 70s] gi|255506827|ref|ZP_05382466.1| chromosomal replication initiation protein [Chlamydia trachomatis D(s)2923] gi|289525289|emb|CBJ14765.1| Chromosomal replication initiation protein [Chlamydia trachomatis Sweden2] gi|296434838|gb|ADH17016.1| chromosomal replication initiation protein [Chlamydia trachomatis E/150] gi|296438558|gb|ADH20711.1| chromosomal replication initiation protein [Chlamydia trachomatis E/11023] Length = 456 Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 114/445 (25%), Positives = 194/445 (43%), Gaps = 34/445 (7%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 + ++G D W + LK ++L +F W EEH R + Sbjct: 12 EKEIGVDTVNKWLRSLKVLCFDACNLYLEAKDSFQVTWF-------------EEHIRHKV 58 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 L+ + P + S T K+ K +G +D F+ Sbjct: 59 KASLINNNGKPIRVRVTSLDKSTPFKETQIQQEKTAYFTMK------YGD-IDPNMSFAN 111 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ N + + Q A+V G NP+++ GKTHL+QA R+ Sbjct: 112 FLVTPENDLPVRILQEFAKVSEQG-KGFPFNPIYLFGPESSGKTHLMQAAVGG--LREAG 168 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 ++ +Y+T+E F SAIR + RN++ L I+D++ L GK Q EF H N Sbjct: 169 VKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEFFHTFN 228 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 SL K +V ++ P +L++++ R+ SR + G+S+P+ E S L+ R Sbjct: 229 SLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLTREGLKSFLERR-----T 283 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLV 401 E + I E L + + +++ + L A L R ++ + L + LL ++ Sbjct: 284 EKLNIRIEETALDFLIQALSSHVKSLLHALTTLAKRVAYKKLSHQMLYQGDIEALLHDVL 343 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E+ ++ I R A++Y +S +L + R V PRQVAM+L + S+ +IG Sbjct: 344 QAAESIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCRQKLSLSYVKIG 403 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETD 486 F RDH+TV+ ++R + + LE D Sbjct: 404 EVF-SRDHSTVISSIRAISQKLEED 427 >gi|332702338|ref|ZP_08422426.1| Chromosomal replication initiator, DnaA domain protein [Desulfovibrio africanus str. Walvis Bay] gi|332552487|gb|EGJ49531.1| Chromosomal replication initiator, DnaA domain protein [Desulfovibrio africanus str. Walvis Bay] Length = 436 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 120/440 (27%), Positives = 203/440 (46%), Gaps = 46/440 (10%) Query: 58 WFQRLKFH-SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 WF LK S V ++ P F W + F+ E +R G LVR Sbjct: 22 WFDPLKVDVSSDEKRVCVAFPHAFFGDWFDTHARSS----FEAEVARFLGPGFLVR---- 73 Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 E +A I P L + V P +F F+ N Sbjct: 74 --YENSA-------------GIGNRPQHLAMKPAQSV-NFPFGHQFTLDNFLVNRKNSFP 117 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 + +A+ +A Y+ P I G GKTHLL+A+AN K R+ + E Sbjct: 118 IASAREVATKGGSTYS-----PFVICGEAGSGKTHLLRAVANEISKSCGIERIFSGSVED 172 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVV 295 +AS R N ++ L D L +DD+Q ++ +Q E + N+L D KQ+V Sbjct: 173 MNQLYASRFR-NDPHKARNHLGAFDYLFVDDLQQIRNHPDLQQELILIFNALHDRRKQMV 231 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 + S + LDP+++SRL+ G+ V L D ++R ++ +L + KL +N+E Sbjct: 232 FSCTGRLSSYDFLDPKLKSRLEWGLIVHLEAPDLDIRVRYIQQQLKLR-----KLQLNQE 286 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD----ELLSHLVNTGETKKMRI 411 ++ +++ T R L G +L +F ++ +I + ++LSH + + + Sbjct: 287 QILTLSQRFTDF-RFLQGILLKLF---AFKELMNRDIREREFEQILSHTEDVTKPA-LTP 341 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E + + VA H+ + D+ +RR + VV RQ+AMYL + + S+P +GR FG +DH+T Sbjct: 342 EAVLKAVADHFKLPVKDVTGSRRHQDVVMARQMAMYLCRKLLGSSYPALGRLFGGKDHST 401 Query: 472 VLHAVRKVEKMLETDITLKK 491 VL+AV+K++++ + D +K+ Sbjct: 402 VLYAVKKIKELQQDDPDMKR 421 >gi|94986446|ref|YP_594379.1| DNA replication initiation ATPase [Lawsonia intracellularis PHE/MN1-00] gi|226735823|sp|Q1MSG8|DNAA_LAWIP RecName: Full=Chromosomal replication initiator protein DnaA gi|94730695|emb|CAJ54057.1| ATPase involved in DNA replication initiation [Lawsonia intracellularis PHE/MN1-00] Length = 478 Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 125/459 (27%), Positives = 212/459 (46%), Gaps = 31/459 (6%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 V L+ ++ P + W L S + L P+ F+ WI+ R IT+ E Sbjct: 11 VCDSLQKRLSPGTFKVWIAPL-VASEHDGQLFLYAPSLFVMNWIQERLFVDITEAVSEVS 69 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPIN----TNISKSPIILGKQTIS---PV- 153 V+I V+S + + + + + P N T +S S + QT PV Sbjct: 70 GGTMKVQIEVKSSVPDKPQVSLTDYNNKQHIPYNGFPNTKVSISRSHISSQTEQLPLPVS 129 Query: 154 -FGSPLDSR---FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +P SR + F +F+ G N +A AAQ++ + T ++ LF+ + GLGK Sbjct: 130 LVKAPFSSRSWRYSFDSFVVGPCNNLAHAAAQNMIK------DTASVDTLFLSSGPGLGK 183 Query: 210 THLLQAIANA--SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 THL QA+ A +I + N +V YLTAE F F ++R + K R+ DL L++D Sbjct: 184 THLTQAVGQALCNISNRANPKVEYLTAEEFCSCFVQSLRTKNVDSFKGRFRDTDLFLLED 243 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + FLQGK +Q E + SL +VV + P EL+++D R+ SR G + Sbjct: 244 IHFLQGKEKMQDELLATIRSLQGRGSRVVLTSSFAPKELKNVDNRLVSRFCSGFLAGIEK 303 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 + E R R+ I + + + ++E V +A + R+L+ + + LV + Sbjct: 304 PNAETR-----RRILIEKAKVHAVVLSEAVADFLAMKLVGDIRQLESSISNLVLKAKLLD 358 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +++ ++A ++++ T + M I+ I V+ + + L S R + V R Sbjct: 359 CMISMDMAKDVIAQY--TQDDPFMNIDSIIHAVSGSFGLQAEKLYSRSRKQDFVVARNTI 416 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 YL++ T S EIG RF R H+TVL + +E+ ++ Sbjct: 417 FYLARKHTDMSLQEIGDRF-HRRHSTVLKGIASIEREIQ 454 >gi|282852314|ref|ZP_06261656.1| putative chromosomal replication initiator protein DnaA [Lactobacillus gasseri 224-1] gi|282556056|gb|EFB61676.1| putative chromosomal replication initiator protein DnaA [Lactobacillus gasseri 224-1] Length = 220 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 128/226 (56%), Gaps = 12/226 (5%) Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL+ Sbjct: 1 EFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLETRIAILRK 60 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIAD 394 + E L I++ L ++A V T+ REL+GA LV + A I + ++A Sbjct: 61 K-----AETDGLAIDDSTLDYIASQVDTNIRELEGA---LVKVQAHATIEREDINVDLAK 112 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ + Sbjct: 113 EALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSRELID 172 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 173 SSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 218 >gi|15604971|ref|NP_219755.1| chromosomal replication initiation protein [Chlamydia trachomatis D/UW-3/CX] gi|76788972|ref|YP_328058.1| chromosomal replication initiation protein [Chlamydia trachomatis A/HAR-13] gi|237802673|ref|YP_002887867.1| chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] gi|237804595|ref|YP_002888749.1| chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311051|ref|ZP_05353621.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276] gi|255317352|ref|ZP_05358598.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276s] gi|14194662|sp|O84252|DNAA1_CHLTR RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|3328661|gb|AAC67843.1| Replication Initiation Factor [Chlamydia trachomatis D/UW-3/CX] gi|76167502|gb|AAX50510.1| DnaA [Chlamydia trachomatis A/HAR-13] gi|231272895|emb|CAX09806.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|231273907|emb|CAX10699.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] gi|296435766|gb|ADH17940.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9768] gi|296436690|gb|ADH18860.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11222] gi|296437626|gb|ADH19787.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11074] gi|297140125|gb|ADH96883.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9301] gi|297748380|gb|ADI50926.1| DnaA [Chlamydia trachomatis D-EC] gi|297749260|gb|ADI51938.1| DnaA [Chlamydia trachomatis D-LC] Length = 456 Score = 136 bits (343), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 114/445 (25%), Positives = 194/445 (43%), Gaps = 34/445 (7%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 + ++G D W + LK ++L +F W EEH R + Sbjct: 12 EKEIGVDTVNKWLRSLKVLCFDACNLYLEAKDSFQVTWF-------------EEHIRHKV 58 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 L+ + P + S T K+ K +G +D F+ Sbjct: 59 KASLINNNGKPIRVRVTSLDKSTPFKETQIQQEKTAYFTMK------YGD-IDPNMSFAN 111 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ N + + Q A+V G NP+++ GKTHL+QA R+ Sbjct: 112 FLVTPENDLPVRILQEFAKVSEQG-KGFPFNPIYLFGPESSGKTHLMQAAVGG--LREAG 168 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 ++ +Y+T+E F SAIR + RN++ L I+D++ L GK Q EF H N Sbjct: 169 VKTLYVTSELFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEFFHTFN 228 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 SL K +V ++ P +L++++ R+ SR + G+S+P+ E S L+ R Sbjct: 229 SLHTEGKLIVISSTFAPGDLKAMEERLISRFEWGISIPVSPLIREGLKSFLERR-----T 283 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLV 401 E + I E L + + +++ + L A L R ++ + L + LL ++ Sbjct: 284 EKLNIRIEETALDFLIQALSSHVKSLLHALTTLAKRVAYKKLSHQMLYQGDIEALLHDVL 343 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E+ ++ I R A++Y +S +L + R V PRQVAM+L + S+ +IG Sbjct: 344 QAAESIRLTPSGIVRATAQYYGVSPESVLGRSQSREYVLPRQVAMFLCRQKLSLSYVKIG 403 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETD 486 F RDH+TV+ ++R + + LE D Sbjct: 404 EVF-SRDHSTVISSIRAISQKLEED 427 >gi|110433399|gb|ABG74381.1| DnaA [Rickettsia slovaca 13-B] gi|110433401|gb|ABG74382.1| DnaA [Rickettsia slovaca] gi|110433403|gb|ABG74383.1| DnaA [Rickettsia slovaca] Length = 199 Score = 136 bits (343), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP +T + + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGTTQTVTELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S IL S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIL----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|226226817|ref|YP_002760923.1| bacterial DnaA family protein [Gemmatimonas aurantiaca T-27] gi|226090008|dbj|BAH38453.1| bacterial DnaA family protein [Gemmatimonas aurantiaca T-27] Length = 592 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 86/224 (38%), Positives = 131/224 (58%), Gaps = 11/224 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S LD + F TF+ G SNR+A +AA+++A+ Y NPLF++ G GKTHL+ A Sbjct: 3 SALDRKLRFDTFVVGGSNRLAASAARAVADAPGQAY-----NPLFVYGESGRGKTHLVAA 57 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-K 274 IAN + + QP+LRV++ + E +I + + DLL++DD+QFL G + Sbjct: 58 IANRAQENQPDLRVLFSSGEEVAEHLHQSIASGQPQRFLEHYQQADLLILDDVQFLTGQR 117 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q E LLN L+ + +Q+V +DR P+++ +D R+ SRL GG+ V +G D+EMR + Sbjct: 118 ETQSELLRLLNVLMRAGQQLVFTSDRQPADIPDVDQRLLSRLSGGLVVDVGSPDFEMRLA 177 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 IL+N +A+ ++ D VL VAR + REL GA N+L Sbjct: 178 ILRN-VAVERRTD----FASGVLDEVARLPFANVRELKGALNKL 216 Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 6/155 (3%) Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 + N++AL A ++ E R NPL +H G GK+H + AI NA + V Sbjct: 398 TGNQLALRAVDAVLEEPGR-----RYNPLLLHGPSGSGKSHTVHAIGNAMKQADGRRAVA 452 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 L+A F+ F +A+++ + R D+ ++DD+Q L GK Q E HL N L++ Sbjct: 453 CLSAGTFVEEFVAAMQEGGVERWRARYRAADVFILDDIQELVGKERTQDELFHLFNHLVN 512 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 QVV +DR P +L R+RSR +GG+ V L Sbjct: 513 RGSQVVLTSDRIPRDLNGFADRLRSRFEGGLVVAL 547 >gi|110433405|gb|ABG74384.1| DnaA [Rickettsia honei] Length = 199 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP + +T + + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGITQTVTELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|110433413|gb|ABG74388.1| DnaA [Rickettsia helvetica] Length = 199 Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP +T + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGTTQTVIELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSANIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + PN +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPNRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|89898341|ref|YP_515451.1| chromosomal replication initiation protein [Chlamydophila felis Fe/C-56] gi|89331713|dbj|BAE81306.1| chromosomal replication initiator protein [Chlamydophila felis Fe/C-56] Length = 460 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/323 (30%), Positives = 164/323 (50%), Gaps = 20/323 (6%) Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 DS G+ NP+++ G GKTHL+QA +A R+ +++Y+ ++ F SAIR Sbjct: 135 DSSGFP---FNPIYLFGPEGSGKTHLMQAAVSA--LRESGGKILYVVSDLFTEHLVSAIR 189 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + RN+D L I+D++ GK Q EF H NSL K +V ++ P++L Sbjct: 190 SGEVQRFRSFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLQMEGKLIVISSAYAPADL 249 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ++++ R+ SR + GV+VP+ E S LK Q E + I + L + R ++ Sbjct: 250 KAMEERLISRFEWGVAVPIHPLTKEGLRSFLKR-----QAEQLSIRIEDTALDFLIRALS 304 Query: 366 TSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH 421 ++ + L A L R ++ + L + LL ++ E+ ++ I R VAK+ Sbjct: 305 SNVKTLIHALTLLSKRVAYKKLAQQLLYEDDIQSLLHDILEAAESVRLTPSGIVRAVAKY 364 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 Y +S +L + R V PRQVAMYL + S+ IG F RDH+TV+ ++R + + Sbjct: 365 YGVSPESILGRSQSREHVLPRQVAMYLCRQKLSLSYVRIGDVFS-RDHSTVISSIRAISQ 423 Query: 482 MLET---DITLKKEVELLKRLIS 501 +E DI + + +L+K L S Sbjct: 424 KVEEGGHDIGIATQ-DLMKYLTS 445 >gi|110433425|gb|ABG74394.1| DnaA [Rickettsia helvetica] Length = 199 Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/214 (37%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP +T + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGTTQTVIELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSANIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + PN +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNTPNRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|15835139|ref|NP_296898.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270285311|ref|ZP_06194705.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270289328|ref|ZP_06195630.1| chromosomal replication initiation protein [Chlamydia muridarum Weiss] gi|301336708|ref|ZP_07224910.1| chromosomal replication initiation protein [Chlamydia muridarum MopnTet14] gi|14194690|sp|Q9PKE4|DNAA1_CHLMU RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|7190562|gb|AAF39363.1| chromosomal replication initiator protein DnaA [Chlamydia muridarum Nigg] Length = 456 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 120/465 (25%), Positives = 210/465 (45%), Gaps = 40/465 (8%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 + ++G D W + LK ++L +F W EEH R + Sbjct: 12 EKEIGTDTVNKWLRSLKVLCFDACNLYLEAKDSFQVTWF-------------EEHIRHKV 58 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 L+ + P + S + K +P +S I K + +D + F+ Sbjct: 59 KANLINNNGKPIRVRVTS---LDKSTPFK----ESQIQQEKTAYFTMQYGDIDPQMSFAN 111 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ N + + Q A+V G NP+++ GKTHL+QA I R+ Sbjct: 112 FLVTPENDLPVRILQEFAKVSEQG-KGFPFNPIYLFGPESSGKTHLMQAAVG--ILREAG 168 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 ++ +Y++++ F SAIR + RN++ L I+D++ L GK Q EF H N Sbjct: 169 VKTLYVSSQLFTEHLVSAIRSGEMQRFRAFYRNVEALFIEDIEVLSGKGATQEEFFHTFN 228 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 SL K +V ++ P +L++++ R+ SR + G++VP+ E S L+ R+ Sbjct: 229 SLHTEGKLIVISSIFAPGDLKAMEERLISRFEWGIAVPVSPLTREGLKSFLERRI----- 283 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLV 401 E + I E L + + +++ + L A L R ++ + L + LL ++ Sbjct: 284 EQLNIRIEETALDFLIQALSSHIKSLLHALTTLAKRVAYKKLSHQLLYQGDVEALLQDVL 343 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 E ++ I R A++Y +S ++L + R V PRQVAM+L + S+ +IG Sbjct: 344 QAAEHIRLTPSGIVRATAQYYGVSPENILGRSQSREYVLPRQVAMFLCRQKLSLSYVKIG 403 Query: 462 RRFGDRDHTTVLHAVRKVEKML-----ETDITLKKEVELLKRLIS 501 F RDH+TV+ ++R + + L E+D++ + EL KRL S Sbjct: 404 EVFS-RDHSTVISSIRAISQKLDEDDRESDVSCGVQ-ELTKRLSS 446 >gi|110433419|gb|ABG74391.1| DnaA [Israeli tick typhus rickettsia] gi|110433421|gb|ABG74392.1| DnaA [Rickettsia conorii] gi|110433423|gb|ABG74393.1| DnaA [Rickettsia conorii] gi|110433435|gb|ABG74399.1| DnaA [Rickettsia sp. A-167] gi|110433439|gb|ABG74401.1| DnaA [Rickettsia rickettsii] gi|110433443|gb|ABG74403.1| DnaA [Rickettsia africae] gi|110433449|gb|ABG74406.1| DnaA [Israeli tick typhus rickettsia] gi|110433451|gb|ABG74407.1| DnaA [Israeli tick typhus rickettsia] gi|110433453|gb|ABG74408.1| DnaA [Israeli tick typhus rickettsia] gi|110433455|gb|ABG74409.1| DnaA [Rickettsia conorii] gi|110433457|gb|ABG74410.1| DnaA [Israeli tick typhus rickettsia] Length = 199 Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP +T + + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGTTQTVTELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|110433429|gb|ABG74396.1| DnaA [Rickettsia sp. BJ-90] Length = 199 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP +T ++ I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGTTQTVTALPTKTFGDIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIF----------STLDIRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|239904640|ref|YP_002951378.1| chromosomal replication initiator protein DnaA [Desulfovibrio magneticus RS-1] gi|239794503|dbj|BAH73492.1| chromosomal replication initiator protein DnaA [Desulfovibrio magneticus RS-1] Length = 446 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 101/350 (28%), Positives = 171/350 (48%), Gaps = 24/350 (6%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P RF F TF+ N L A+ EV G VR NP + G GKTHLL+A+ Sbjct: 109 PYGHRFTFETFLANEKNAFPLALAR---EVSRGG--EVRYNPFLVCGPSGAGKTHLLRAM 163 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM-QFLQGKL 275 ANA K QP R+ + + +A A R ++ L + D L ID++ + Sbjct: 164 ANAVAKSQPTSRIYFGSVADIQALYADARRPR--PEIRAELSSHDWLFIDELTDVARAPD 221 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 ++ E + N D+ +Q+V ++ + + LDP RSRL+ G+ V L D +R Sbjct: 222 LEPELIGMFNDFHDAGRQMVFSSRERAASCDFLDPTFRSRLEWGLMVHLKAPDLSIR--- 278 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 R +D +L ++ E ++ +A R L+G +L +F E+++ Sbjct: 279 --ARFVEQVSKDKRLGLSREQVLTLAGRFEGF-RRLEGVLLRL---EAFRQHAGGELSEA 332 Query: 396 LLSHLVNTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 S + E KK + E + + A+H+ I D++ R + +V RQ AM L + + Sbjct: 333 EFSRHIRLSEDKKAPELSPERVIAVCAEHFGIPARDIVGAGRKKELVFARQAAMTLCRSL 392 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+P +G+ FG +DH+TVL+++RK +++L+ D +E ++L R +S+ Sbjct: 393 LGLSYPALGKVFGGKDHSTVLYSIRKFQQILDVD----QETKMLLRQLSK 438 >gi|110433407|gb|ABG74385.1| DnaA [Rickettsia aeschlimannii] Length = 199 Score = 134 bits (338), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP + +T + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGITQTVIELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|148377269|ref|YP_001256145.1| chromosomal replication initiation protein [Mycoplasma agalactiae PG2] gi|291319938|ref|YP_003515196.1| chromosomal replication initiator protein DnaA [Mycoplasma agalactiae] gi|148291315|emb|CAL58698.1| Chromosomal replication initiator protein DnaA [Mycoplasma agalactiae PG2] gi|290752267|emb|CBH40238.1| Chromosomal replication initiator protein DnaA [Mycoplasma agalactiae] Length = 466 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 105/348 (30%), Positives = 176/348 (50%), Gaps = 24/348 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 +D F ++EG+ N+ A+ A+ I E + NP+FI+ G+GKTHLL AI Sbjct: 120 VDKTKTFENYVEGNFNKEAIRIAKLIVEGEED------YNPIFIYGKSGIGKTHLLNAIC 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---DSLRNIDLLLIDDMQFL--- 271 N +K++ + V Y+ A F + +++N LK + N D+++ DD Q Sbjct: 174 NELLKKE--VSVKYINANSFTRDISYFLQENDQRKLKQIRNHFDNADIVMFDDFQSYGIG 231 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SLDPRIRSRLQGGVSVPLGLHDYE 330 K ++L+S ++ + + +DRP L+ S D R+ SRL G+ + + Sbjct: 232 NKKATIELIFNILDSRINQKRTTIICSDRPIYSLQNSFDARLISRLSMGLQLSIDEPQKA 291 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS----FAP 386 IL + I+ K P+L ++ + + S R L GA N+L F +S Sbjct: 292 DLLKILDYMIDIN-KMTPEL-WEDDAKNFIVKNYANSIRSLIGAVNRLRFYNSEIVKTNS 349 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 T I + +L + E K+ + I VAK+Y +SR+++L R + VV R +A+ Sbjct: 350 RYTLAIVNSILKDIQQVKE--KVTPDVIIEYVAKYYKLSRSEILGKSRRKDVVLARHIAI 407 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE-TDITLKKEV 493 ++ K S +IGR FG+RDH+T+++AVRK+EK E +DIT K+ + Sbjct: 408 WIVKKQLDLSLEQIGRFFGNRDHSTIINAVRKIEKETEQSDITFKRTI 455 >gi|110433441|gb|ABG74402.1| DnaA [Rickettsia canadensis] Length = 199 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 121/214 (56%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ VEI+ + LP KT + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSVEIITKE--LPGTSKTVIELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + + I S LD RF F F+ G N +A AA+++AE Sbjct: 59 SELNAENIF----------STLDVRFTFDNFVVGVPNELAYAAARAVAESTD---AVSES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + PN +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPNRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|323699689|ref|ZP_08111601.1| Chromosomal replication initiator DnaA domain [Desulfovibrio sp. ND132] gi|323459621|gb|EGB15486.1| Chromosomal replication initiator DnaA domain [Desulfovibrio desulfuricans ND132] Length = 432 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 95/345 (27%), Positives = 171/345 (49%), Gaps = 19/345 (5%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P F F TF+ N + +A+ +A+ + NP I G GKTHLL+++ Sbjct: 97 PFGQEFTFDTFLINKKNYFPIASAKEVAKQ-----SGSLFNPFIICGPGGSGKTHLLKSV 151 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QGKL 275 N I ++ + +++ + + S ++ L + + L IDD + + Sbjct: 152 GN-EIAKKHDYSTIFMGSLEELNSLYSIRFKGDPFKARNHLFDYNFLFIDDFHKIKEHPH 210 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q E ++ N D+ KQ+V A + + LD ++SRL G+ V L D E+R Sbjct: 211 FQQELVNIFNHFYDNKKQMVLACREKVTSYDFLDDNLQSRLGWGLIVTLKEPDLEIRVGY 270 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 ++ Q +L++ +E ++ +A+ T R L G +L +F ++ ++ + Sbjct: 271 IQR-----QARAKRLSLTKEQVLTLAQRFT-DFRYLQGILLKLF---AFKELVKQDLTQK 321 Query: 396 LLSH-LVNTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 H L NT E T + + I +VA+H+++ DL +R + + RQVAMYL + M Sbjct: 322 DFEHILANTEEKTTDDLTPKKILSVVAEHFSVHVKDLTGTKRHQHIAHARQVAMYLCRQM 381 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 S+P +GR FG +DH+TVL++V+K++++ E D LK+ ++ LK Sbjct: 382 LNTSYPALGRAFGGKDHSTVLYSVKKIDQLQEDDFELKQLLKTLK 426 >gi|110433411|gb|ABG74387.1| DnaA [Rickettsia sp. Bar29] Length = 199 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 127/214 (59%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP + +T + + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGITQTVIALPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + + I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNAENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|29840234|ref|NP_829340.1| chromosomal replication initiation protein [Chlamydophila caviae GPIC] gi|33301061|sp|Q823E6|DNAA2_CHLCV RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|29834582|gb|AAP05218.1| chromosomal replication initiator protein DnaA [Chlamydophila caviae GPIC] Length = 460 Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 97/329 (29%), Positives = 164/329 (49%), Gaps = 32/329 (9%) Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 D+ G+ NP+++ G GKTHL+QA NA R+ +++Y+ ++ F SAIR Sbjct: 135 DTAGFP---FNPIYLFGPEGSGKTHLMQAAVNA--LREFGGKILYVASDLFTEHLVSAIR 189 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + RN+D L I+D++ GK Q EF H NSL K +V ++ P++L Sbjct: 190 SGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLQTEGKLIVISSAYAPADL 249 Query: 306 ESLDPRIRSRLQGGVSVPL------GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 ++++ R+ SR + GV+VP+ GL + M Q E + I + L Sbjct: 250 KAMEERLISRFEWGVAVPIHPLTKEGLRSFLMH-----------QAEQLSVRIEDTALDF 298 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQ 415 + ++++ + L A L R ++ + L + LL ++ E+ ++ I Sbjct: 299 LIHALSSNVKTLIDALKLLSKRVAYKKLAQQLLYEDDIQTLLHDVLEVAESVRLTPSGIV 358 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 R VAK+Y +S +L + R V PRQV+MYL + S+ IG F RDH+TV+ + Sbjct: 359 RAVAKYYGVSPESILGRSQSREYVLPRQVSMYLCRQKLSLSYVRIGDVFS-RDHSTVISS 417 Query: 476 VRKVEKMLET---DITLKKEVELLKRLIS 501 +R + + +E DI++ + EL+K L S Sbjct: 418 IRAISQKVEEGGDDISIATQ-ELMKSLTS 445 >gi|269303183|gb|ACZ33283.1| putative chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae LPCoLN] Length = 460 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 168/345 (48%), Gaps = 29/345 (8%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV-DSHGYTTVRLNPLFIHASVGLGKTHL 212 +GS ++ FS F+ N + Q + D +G V NP+++ G GKTHL Sbjct: 101 YGS-VNPEMTFSNFLVTPENDLPFRVLQEFTKSPDENG--GVTFNPIYLFGPEGSGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +Q+ S+ R+ +++Y++++ F SAIR + RNID L I+D++ Sbjct: 158 MQSAI--SVLRESGGKILYVSSDLFTEHLVSAIRSGEMQKFRSFYRNIDALFIEDIEVFS 215 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL------G 325 GK Q EF H NSL K +V ++ P++L +++ R+ SR + GV++P+ G Sbjct: 216 GKSATQEEFFHTFNSLHSEGKLIVVSSSYAPADLVAVEDRLISRFEWGVAIPIHPLVQEG 275 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 L + MR Q E + I E L + ++++ + L A N L R + Sbjct: 276 LRSFLMR-----------QVERLSIRIQETALDFLIYALSSNVKTLLHALNLLAKRVMYK 324 Query: 386 P----ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +L + LL ++ + ++ I R VA++Y +S+ +L + R V P Sbjct: 325 KLSHQLLYEDDVKTLLKDVLEAAGSVRLTPLKIIRNVAQYYGVSQESILGRSQSREYVLP 384 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 RQVAMY + S+ IG F RDH+TV+ ++R +E+ +E + Sbjct: 385 RQVAMYFCRQKLSLSYVRIGDVFS-RDHSTVISSIRLIEQKIEEN 428 >gi|110433431|gb|ABG74397.1| DnaA [Rickettsia japonica] gi|110433437|gb|ABG74400.1| DnaA [Rickettsia felis] Length = 199 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 79/214 (36%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP +T + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGTTQTVIELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|110433415|gb|ABG74389.1| DnaA [Rickettsia typhi str. Wilmington] Length = 199 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + V P +T S Sbjct: 1 PTNFIRDWIKSKYAMVILQLFQHYNNAIKSIEIITKEV--PGTTQTVIELPTKTFS---- 54 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 NIS S + + TIS LD RF F F+ G+ N +A AA+++AE + + Sbjct: 55 NISNSAL-NSENTIST-----LDLRFTFDNFVVGAPNELAYAAARAVAESSGAVFES--- 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ + K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|110433427|gb|ABG74395.1| DnaA [Rickettsia rhipicephali] Length = 199 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/214 (37%), Positives = 129/214 (60%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP + +T I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGITQTV----IELPTKTFA 54 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 +I S + G +F S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 55 DIGSSELNTGN-----IF-STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|262363789|gb|ACY60510.1| chromosomal replication initiator protein [Yersinia pestis D106004] Length = 231 Score = 133 bits (335), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 80/225 (35%), Positives = 131/225 (58%), Gaps = 8/225 (3%) Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +++N K R++D LLIDD+ F K Q EF H N+LL+ +Q++ +DR P Sbjct: 1 MQNNAIEEFKRYYRSVDALLIDDIPFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPK 60 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+ ++ R++SR G++V + + E R +IL + + ++ + + EV +A+ Sbjct: 61 EINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKR 115 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + ++ REL+GA N+++ +F +T + E L L+ E K + I++IQ+ VA++Y Sbjct: 116 LRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQE-KLVTIDNIQKTVAEYY 174 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG R Sbjct: 175 KIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGR 219 >gi|110433447|gb|ABG74405.1| DnaA [Rickettsia mongolotimonae] Length = 199 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 125/214 (58%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP + + + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGTTQIVTELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|15618229|ref|NP_224514.1| chromosomal replication initiation protein [Chlamydophila pneumoniae CWL029] gi|16752730|ref|NP_444997.1| chromosomal replication initiation protein [Chlamydophila pneumoniae AR39] gi|33241653|ref|NP_876594.1| chromosomal replication initiation protein [Chlamydophila pneumoniae TW-183] gi|14194708|sp|Q9Z8M9|DNAA1_CHLPN RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|4376586|gb|AAD18458.1| Replication Initiation Factor [Chlamydophila pneumoniae CWL029] gi|7189371|gb|AAF38287.1| chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae AR39] gi|33236162|gb|AAP98251.1| replication initiation protein [Chlamydophila pneumoniae TW-183] Length = 460 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 29/345 (8%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV-DSHGYTTVRLNPLFIHASVGLGKTHL 212 +GS ++ FS F+ N + Q + D +G T NP+++ G GKTHL Sbjct: 101 YGS-VNPEMTFSNFLVTPENDLPFRVLQEFTKSPDENGGVT--FNPIYLFGPEGSGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +Q+ S+ R+ +++Y++++ F SAIR + RNID L I+D++ Sbjct: 158 MQSAI--SVLRESGGKILYVSSDLFTEHLVSAIRSGEMQKFRSFYRNIDALFIEDIEVFS 215 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL------G 325 GK Q EF H NSL K +V ++ P +L +++ R+ SR + GV++P+ G Sbjct: 216 GKSATQEEFFHTFNSLHSEGKLIVVSSSYAPVDLVAVEDRLISRFEWGVAIPIHPLVQEG 275 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 L + MR Q E + I E L + ++++ + L A N L R + Sbjct: 276 LRSFLMR-----------QVERLSIRIQETALDFLIYALSSNVKTLLHALNLLAKRVMYK 324 Query: 386 P----ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +L + LL ++ + ++ I R VA++Y +S+ +L + R V P Sbjct: 325 KLSHQLLYEDDVKTLLKDVLEAAGSVRLTPLKIIRNVAQYYGVSQESILGRSQSREYVLP 384 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 RQVAMY + S+ IG F RDH+TV+ ++R +E+ +E + Sbjct: 385 RQVAMYFCRQKLSLSYVRIGDVFS-RDHSTVISSIRLIEQKIEEN 428 >gi|15835844|ref|NP_300368.1| chromosomal replication initiation protein [Chlamydophila pneumoniae J138] gi|8978683|dbj|BAA98519.1| replication initiation factor [Chlamydophila pneumoniae J138] Length = 460 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 167/345 (48%), Gaps = 29/345 (8%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV-DSHGYTTVRLNPLFIHASVGLGKTHL 212 +GS ++ FS F+ N + Q + D +G V NP+++ G GKTHL Sbjct: 101 YGS-VNPEMTFSNFLVTPENDLPFRVLQEFTKSPDENG--GVTFNPIYLFGPEGSGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +Q+ S+ R+ +++Y++++ F SAIR + RNID L I+D++ Sbjct: 158 MQSAI--SVLRESGGKILYVSSDLFTEHLVSAIRSGEMQKFRSFYRNIDALFIEDIEVFS 215 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL------G 325 GK Q EF H NSL K +V ++ P +L +++ R+ SR + GV++P+ G Sbjct: 216 GKSATQEEFFHTFNSLHSEGKLIVVSSSYAPVDLVAVEDRLISRFEWGVAIPIHPLVQEG 275 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 L + MR Q E + I E L + ++++ + L A N L R + Sbjct: 276 LRSFLMR-----------QVERLSIRIQETALDFLIYALSSNVKTLLHALNLLAKRVMYK 324 Query: 386 P----ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +L + LL ++ + ++ I R VA++Y +S+ +L + R V P Sbjct: 325 KLSHQLLYEDDVKTLLKDVLEAAGSVRLTPLKIIRNVAQYYGVSQESILGRSQSREYVLP 384 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 RQVAMY + S+ IG F RDH+TV+ ++R +E+ +E + Sbjct: 385 RQVAMYFCRQKLSLSYVRIGDVFS-RDHSTVISSIRLIEQKIEEN 428 >gi|62185088|ref|YP_219873.1| chromosomal replication initiation protein [Chlamydophila abortus S26/3] gi|62148155|emb|CAH63912.1| chromosomal replication initiator protein [Chlamydophila abortus S26/3] Length = 460 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 101/352 (28%), Positives = 170/352 (48%), Gaps = 30/352 (8%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F+ F+ N + Q + S T NP+++ G GKTHL+QA N + R Sbjct: 110 FANFLVTPENDLPFRILQEFTK-PSEDATGFPFNPIYLFGPEGSGKTHLMQAAVN--VLR 166 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 + +++Y+ ++ F SAIR + RN+D L I+D++ GK Q EF H Sbjct: 167 ESGGKILYVASDLFTEHLVSAIRSGEMQRFRSFYRNVDALFIEDIEVFSGKGATQEEFFH 226 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV---PL---GLHDYEMRFSIL 336 NSL K +V ++ P++L++++ R+ SR + GV+V PL GL + MR Sbjct: 227 TFNSLQTEGKLIVISSAYAPADLKAMEERLISRFEWGVAVLIHPLTKEGLRSFLMR---- 282 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEI 392 Q E + I + L + ++++ + L A L R ++ + L + Sbjct: 283 -------QTEQLSIRIEDSALDFLIHALSSNMKALLHALTLLSKRVAYKKLTQQLLYEDD 335 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 LL ++ E+ ++ I VAK+Y +S +L + R V PRQVAMYL + Sbjct: 336 IQSLLHDVLEAAESVRLTPSGIVHAVAKYYGVSPESILGRSQSREYVLPRQVAMYLCRQK 395 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET---DITLKKEVELLKRLIS 501 S+ IG F RDH+TV+ ++R + + +E DI++ + +L+K L S Sbjct: 396 LSLSYVRIGDVFS-RDHSTVISSIRAISQKVEEGGHDISIATQ-DLMKYLTS 445 >gi|282890628|ref|ZP_06299151.1| hypothetical protein pah_c022o239 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499625|gb|EFB41921.1| hypothetical protein pah_c022o239 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 464 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 102/347 (29%), Positives = 161/347 (46%), Gaps = 27/347 (7%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV-------RLNPLFIHASVGLGKT 210 +D F F+ SN +A I DS T + NP++++ G GKT Sbjct: 110 VDPYCTFDQFVISESNLLAHKLLCKITGFDSVSKTFIPPTSDLAAFNPIYLYGKEGTGKT 169 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ- 269 HLL A A+A R+ L +Y AE F AIR + + RNID+LLIDD+ Sbjct: 170 HLLMATADAL--RKQGLSAIYTRAETFTEHVVGAIRAGEMSTFRQAYRNIDVLLIDDVHV 227 Query: 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 F + Q E H N+L S KQ+V ++ P +L+ ++PR+ SR + G+ +PL Sbjct: 228 FSRKGATQEELFHTFNTLHLSGKQIVLSSHCLPGDLQLIEPRLVSRFEWGIVLPLE---- 283 Query: 330 EMRFSILKNRLAISQKEDP-KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF---- 384 +I + + +S+K +N +V ++ T T+S + L A L+ R Sbjct: 284 --SLNIQEKQEMLSRKARAFNYLLNPKVSQYLLETFTSSTKALVKALEALILRSHLNLKG 341 Query: 385 -----APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 P + + L+ L+ E + I + VA+ Y I D+L + R Sbjct: 342 TSITTNPNPSIMQVKQYLADLIKEEEQTALTPHKIVQAVAEFYGIRTEDILGKAQSRDCA 401 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 PRQ+AMYL + + +IG F RDH+TV+ +V+ + K +E D Sbjct: 402 LPRQIAMYLCRNQLKIPYMKIGDLF-TRDHSTVMSSVKLIHKGIEQD 447 >gi|32471553|ref|NP_864546.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica SH 1] gi|32443394|emb|CAD72227.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica SH 1] Length = 591 Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 156/344 (45%), Gaps = 35/344 (10%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P G LDS FI G N A +AA S PLF+H G GK+H Sbjct: 246 PTGGRTLDS------FITGPCNEFAFSAAMMAVATPSVA------TPLFLHGPTGTGKSH 293 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+AN R+ RVV LTAE F F ++ + R++D LLIDD+ FL Sbjct: 294 LLAALANEFRTRRRMRRVVLLTAEQFTNDFVVSVGSTGLPAFRRRYRDVDALLIDDVHFL 353 Query: 272 QGKLIQ-HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K E + + +L + K +V +A+ PPS++ L + R+ G+ PL D E Sbjct: 354 AAKTATLREALYTVETLASAGKPLVFSANLPPSDIRGLTGEVAGRMASGLVCPLAALDQE 413 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN-----QLVFRHSFA 385 RF +L+ +A L + +L V+ + R G N Q +FR Sbjct: 414 TRFKLLQRMVATRC----VLGCDNTLLEEVSELIGGDARAAGGIANLIGMLQRMFRRE-- 467 Query: 386 PILTAEIADELLSH----LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 P + DE+ + L +T +R I++ V + + + + L + R V P Sbjct: 468 PTI-----DEIRRYGGDLLRSTQVAPTLR--SIEKAVCETFGLEGDGLRGKAQTRRVSEP 520 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 R +AMYL++ T +F EI + FG R H+ + A+ KVE L + Sbjct: 521 RTLAMYLARQHTGSAFTEIAKHFGRRSHSNAISAISKVETWLSS 564 >gi|283853686|ref|ZP_06370917.1| Chromosomal replication initiator DnaA [Desulfovibrio sp. FW1012B] gi|283570927|gb|EFC18956.1| Chromosomal replication initiator DnaA [Desulfovibrio sp. FW1012B] Length = 453 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 119/466 (25%), Positives = 215/466 (46%), Gaps = 29/466 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+I+ + L+ + P +Y W + L + ++ L+ P F+ +W++ R +++ Sbjct: 2 ETIWPRIKKLLEQTLSPGLYNLWIKPLTARA-RDGVLELAAPNAFVASWVRERLADSVV- 59 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E + + G + V + + + + + + L +P G Sbjct: 60 ---EAAAVVMGSRPQL--VVTEAARTADAPAAAPAATAPRPARAPRSLTLPMAPKAPDLG 114 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + RF + F+ G SN +A A+Q I ++ ++ + LFI ++ GLGKTHL+QA Sbjct: 115 ND-RFRFSYDEFVVGPSNELAYVASQGICDM------SLSADQLFISSAPGLGKTHLIQA 167 Query: 216 ----IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQF 270 +++ + NLRV YL+AE F R A++ K + R N+D+LL++D+ F Sbjct: 168 MGKRLSHTGGEDGRNLRVAYLSAEEFANRLVIALKTRQVEKFKAAFRENVDVLLLEDIHF 227 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K IQ E + L +L ++V + P +L LD ++ SR+ G + D Sbjct: 228 FRDKPRIQDELLNTLIALNSRGCRLVFTSSFLPRDLAGLDAQLLSRISSGFLTVIDKPDL 287 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 R IL+ + A+ Q P +EV +A + R+L+ L + + Sbjct: 288 ATRKRILERKAAVHQVLLP-----DEVSTLLADRLHADVRQLESCLQNLALKARLLNCRI 342 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A ++L H E + + +EDI V Y +S + L+S R R V R A L Sbjct: 343 SVDLAWDVLRHY--DLEARSLTLEDIVEYVCDVYRLSADQLVSKSRKRQYVLARNTAFLL 400 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 ++ T S +IG RF R H+TV+ + +E+ L L +E+E Sbjct: 401 ARQHTDMSLVDIGNRFN-RRHSTVVKGITSLERHLSLRTPLGRELE 445 >gi|242281238|ref|YP_002993367.1| chromosomal replication initiator DnaA domain protein [Desulfovibrio salexigens DSM 2638] gi|242124132|gb|ACS81828.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio salexigens DSM 2638] Length = 434 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 107/445 (24%), Positives = 203/445 (45%), Gaps = 53/445 (11%) Query: 56 ASWFQRLKFH-SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 A WF + S + V ++ P F W K+ +I F+E+ + G Sbjct: 19 ARWFDPINIDISEKNGEVVVTFPHAFFGQWFKS----SIQDRFEEQLGQFLG-------- 66 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 + S S + +T++ + P+ + K P F F F+ G N Sbjct: 67 -------SGFSISYSNNGSNHTSVQEQPVSVKKIDF------PFGHNFTFENFLIGKKNY 113 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 L +A+ +A V++ + NP I G GK+HLL+AIAN K+ +V Sbjct: 114 FPLASAKEVARVEN-----ISFNPFVICGKSGSGKSHLLKAIANEVCKKVDREKVFLGNV 168 Query: 235 E----YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM-QFLQGKLIQHEFCHLLNSLLD 289 + + RF I + ++ + + +DD+ Q + + +Q E + N+ + Sbjct: 169 DDVQNIYSVRFGGDI-----MRARNYFFDFEYFFLDDLRQIKKYEHLQQELISIFNNFYE 223 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 KQ+V + + + L+ ++SRL+ G+ V L D E+R ++ + + K Sbjct: 224 HGKQMVFSCTDKLASYDFLNKNLKSRLEWGLIVTLKRPDLEIRAKYVQKQCKLK-----K 278 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKK- 408 L ++++ ++ +++ R L G +L +F ++ + D H+++ E K Sbjct: 279 LPLSKDQILTLSQRFQDF-RYLQGIIIKL---SAFRELVRKNMDDRDFEHILSNTEEKAD 334 Query: 409 --MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 + E + VA H+N+ +DL ++R + RQVAMYL + + S+P +GR FG Sbjct: 335 ETLTPEYVIESVASHFNLKPSDLTGSKRHKMTAHARQVAMYLCRELLGISYPALGRTFGG 394 Query: 467 RDHTTVLHAVRKVEKMLETDITLKK 491 +DH+TVL++V+K++++ D LK+ Sbjct: 395 KDHSTVLYSVKKIQELQRDDRVLKR 419 >gi|110433417|gb|ABG74390.1| DnaA [Rickettsia montanensis] Length = 199 Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP +T + I + Sbjct: 1 PTNFVRDWIKSKYSMVIWQLFQHYNNTIKSIEIITKE--LPGTTQTVIELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q F H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEGFFHTFNTLID 199 >gi|110433433|gb|ABG74398.1| DnaA [Rickettsia australis] Length = 199 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ ++I+ + LP +T + I + Sbjct: 1 PTNFIRDWIKSKYSMVILQLFQHYNNTIKSIDIITKE--LPGTTQTVIELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ + K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|327537593|gb|EGF24307.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica WH47] Length = 578 Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 156/344 (45%), Gaps = 35/344 (10%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P G LDS FI G N A +AA S PLF+H G GK+H Sbjct: 233 PTGGRTLDS------FITGPCNEFAFSAAMMAVATPSV------ATPLFLHGPTGTGKSH 280 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+AN R+ RVV LTAE F F ++ + R++D LLIDD+ FL Sbjct: 281 LLAALANEFRTRRRMRRVVLLTAEQFTNDFVVSVGSTGLPAFRRRYRDVDALLIDDVHFL 340 Query: 272 QGKLIQ-HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K E + + +L + K +V +A+ PPS++ L + R+ G+ PL D E Sbjct: 341 AAKTATLREALYTVETLASAGKPLVFSANLPPSDIRGLTGEVAGRMASGLVCPLAALDQE 400 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN-----QLVFRHSFA 385 RF +L+ +A L + +L V+ + R G N Q +FR Sbjct: 401 TRFKLLQRMVATRC----VLGCDNTLLEEVSELIGGDARAAGGIANLIGMLQRMFRRE-- 454 Query: 386 PILTAEIADELLSH----LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 P + DE+ + L +T +R I++ V + + + + L + R V P Sbjct: 455 PTI-----DEIRRYGGDLLRSTQVAPTLR--SIEKAVCETFGLEGDGLRGKAQTRRVSEP 507 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 R +AMYL++ T +F EI + FG R H+ + A+ KVE L + Sbjct: 508 RTLAMYLARQHTGSAFTEIAKHFGRRSHSNAISAISKVETWLSS 551 >gi|110433445|gb|ABG74404.1| DnaA [Rickettsia akari] Length = 199 Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 78/214 (36%), Positives = 124/214 (57%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ ++I+ + LP +T + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIDIITKE--LPGTTQTVIELPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + S I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNSENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ + K+ Sbjct: 106 NPLFLYGGVGLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|169825619|ref|YP_001695777.1| DnaA [Lysinibacillus sphaericus C3-41] gi|168990107|gb|ACA37647.1| DnaA [Lysinibacillus sphaericus C3-41] Length = 146 Score = 130 bits (327), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 62/136 (45%), Positives = 92/136 (67%), Gaps = 6/136 (4%) Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A A+ ++AE + Y NP FI+ VGLGKTHL+ AI + ++ PN +VVYL++ Sbjct: 9 IAHAASLAVAEAPAKAY-----NPFFIYGGVGLGKTHLMHAIGHYVLEHNPNAKVVYLSS 63 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F F ++IRDN AL+ ++ RN+D+LLIDD+QFL GK Q EF H N+L + +KQ Sbjct: 64 EKFTNEFINSIRDNKALDFRNKYRNVDVLLIDDIQFLAGKESTQEEFFHTFNTLHEESKQ 123 Query: 294 VVAAADRPPSELESLD 309 +V ++DRPP E+ +L+ Sbjct: 124 IVISSDRPPKEIPTLE 139 >gi|110433409|gb|ABG74386.1| DnaA [Rickettsia massiliae] Length = 199 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 126/214 (58%), Gaps = 16/214 (7%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PTNF++ WIK++Y I +LFQ ++ I+ +EI+ + LP + +T + + I + Sbjct: 1 PTNFVRDWIKSKYSMVILQLFQHYNNTIKSIEIITKE--LPGITQTVIALPTKTFADIGS 58 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + + I S LD RF F F+ G+ N +A AA+++AE S G + Sbjct: 59 SELNAENIF----------STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ES 105 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ V LGKTHL+ AI + P+ +V+Y++AE FM++F A+R+ ++ K+ Sbjct: 106 NPLFLYGGVRLGKTHLMHAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEK 165 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 166 FRSVDVLMIDDIQFICGKDSTQEEFFHTFNTLID 199 >gi|239907716|ref|YP_002954457.1| chromosomal replication initiator protein DnaA [Desulfovibrio magneticus RS-1] gi|239797582|dbj|BAH76571.1| chromosomal replication initiator protein DnaA [Desulfovibrio magneticus RS-1] Length = 465 Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 127/478 (26%), Positives = 217/478 (45%), Gaps = 41/478 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT- 94 E+I++ L+ + P ++ W + L + + L P F+ W++ R ++I Sbjct: 2 ETIWSQTKQLLEKTLSPGLFNLWIKPLAARA-RDGALELVAPNAFVATWVRERLTDSIAE 60 Query: 95 ----------KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 ++F E SR +A + + P P +P+ Sbjct: 61 AAAVAMGARPQVFVVEASRAAAPVAASAGLAPAASGRPRRQPG---QRPAGPRPVAAPLT 117 Query: 145 LGKQTISPVFGSPLDSRFVFS--TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 L ++P L RF FS F+ G SN +A A++ I ++ ++ LFI Sbjct: 118 L---PVAPSAPPALADRFRFSYDEFVVGPSNEMAYAASKGICDL------SLSAEQLFIS 168 Query: 203 ASVGLGKTHLLQAIANASIKRQPNL--RVVYLTAEYFMWRFASAIRDNCALNLKDSLR-N 259 ++ GLGKTHL+QA+ + QP RV YL+AE F R AI+ K + R N Sbjct: 169 SAPGLGKTHLIQAMGRRILGGQPGRQPRVAYLSAEEFANRLVMAIKTKQVEQFKAAFREN 228 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D+LL++D+ F + K IQ E + L +L ++V + P EL LD ++ SR+ Sbjct: 229 VDVLLLEDVHFFRDKPRIQDELLNTLKALNARGCRLVFTSSFLPKELSGLDSQLLSRINS 288 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G + D +MR IL + A+ Q + + EEV +A + + R+L+ L Sbjct: 289 GFLAVIDKPDLDMRRRILARKAAVHQ-----VLLPEEVSTLLADKLPSDVRQLESCLQNL 343 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKK--MRIEDIQRMVAKHYNISRNDLLSNRRVR 436 V + A +L I+ +L ++ + + + ++DI V Y +S + L S R R Sbjct: 344 VLK---AKLLNCRISVDLAWDVLRHYDVAQAPVSLDDIVGYVCDVYRLSPDQLKSKSRKR 400 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 V R A L++ T S +IG +F +R H+TV+ + +E+ L L +E+E Sbjct: 401 QYVLARNTAFLLARQHTDLSLADIGVQF-NRRHSTVVKGITALERHLSLKTPLGRELE 457 >gi|86169587|gb|ABC87033.1| chromosomal replication initiation protein [Leuconostoc mesenteroides subsp. dextranicum] Length = 237 Score = 129 bits (325), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 82/239 (34%), Positives = 132/239 (55%), Gaps = 12/239 (5%) Query: 225 PNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 P+ + Y TAE F+ F ++R D K R++DLLL+DD+QF GK +Q EF Sbjct: 6 PSAHIKYATAEDFLNDFTESLRAGDGATAAFKQEYRSVDLLLVDDIQFWSGKEKVQEEFF 65 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N L + KQ+V +D+ P+E+ L R+ SR + G+ + + D R +IL+N Sbjct: 66 NTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFEAGIMMDIQKPDLPTRVAILQNL-- 123 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTAEIADELLSH 399 E L+I +VL +A + ++ R L+GAF++ R+ P T E A ++L Sbjct: 124 ---SESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFEASLRYMNKPA-TKETAQQILGD 179 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L N + K+ +E IQ++VA +Y + +DL S+ R + +V R VAMYL++ +T S P Sbjct: 180 L-NINQGFKITVERIQQVVADYYMQTIDDLKSSSRKKDLVTARHVAMYLTRTLTNESLP 237 >gi|313678135|ref|YP_004055875.1| chromosomal replication initiator protein dnaA [Mycoplasma bovis PG45] gi|312950805|gb|ADR25400.1| chromosomal replication initiator protein dnaA [Mycoplasma bovis PG45] Length = 466 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/348 (29%), Positives = 176/348 (50%), Gaps = 24/348 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 +D F ++EG+ N+ A+ A+ I + + NP+FI+ G+GKTHLL AI Sbjct: 120 VDKTKTFDNYVEGNFNKEAIRIAKLIVDGEED------YNPIFIYGKSGIGKTHLLNAIC 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---DSLRNIDLLLIDDMQFL--- 271 N +K+ ++ V Y+ A F + +++N LK + N D+++ DD Q Sbjct: 174 NEFLKK--DVTVKYINANSFTRDISYFLQENDQRKLKQIRNHFDNADIVMFDDFQSYGIG 231 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SLDPRIRSRLQGGVSVPLGLHDYE 330 K ++L+S ++ + + +DRP L+ S D R+ SRL G+ + + Sbjct: 232 NKKATIELIFNILDSRINQKRTTIICSDRPIYSLQNSFDARLISRLSMGLQLSIDEPQKA 291 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS----FAP 386 IL + I+ K P+L ++ + + + S R L GA N+L F +S Sbjct: 292 DLLKILDYMININ-KMTPEL-WEDDAKIFIVKNHANSIRSLIGAINRLRFYNSEIVKTNS 349 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 T I + +L + E K+ + I VAK+Y +SR+++L R + VV R +A+ Sbjct: 350 RYTLAIVNSILKDIQQVKE--KVTPDVIIEYVAKYYKLSRSEILGKSRRKDVVLARHIAI 407 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE-TDITLKKEV 493 ++ K S +IG+ FG+RDH+T+++AVRK+EK E +D T K+ + Sbjct: 408 WIVKKQLDLSLEQIGKFFGNRDHSTIINAVRKIEKETEQSDRTFKRTI 455 >gi|330902925|gb|EGH33868.1| chromosomal replication initiation protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 180 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 67/183 (36%), Positives = 110/183 (60%), Gaps = 6/183 (3%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ A++ N K Sbjct: 3 NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRF 62 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R++D LLIDD+QF K Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR Sbjct: 63 YRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSR 122 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 G++V + + E R +IL + + + K+++ + +A+ + ++ REL+GA Sbjct: 123 FGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFFIAQRIRSNVRELEGAL 177 Query: 376 NQL 378 ++ Sbjct: 178 KRV 180 >gi|86169613|gb|ABC87046.1| chromosomal replication initiation protein [Weissella viridescens] Length = 236 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/242 (33%), Positives = 136/242 (56%), Gaps = 10/242 (4%) Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDN--CALNLKDSLRNIDLLLIDDMQFLQG 273 I NA +R P +V ++T E F+ F A+R K R+ DLL++DD+QFL G Sbjct: 1 IGNAVYERTPEAKVKFITTEDFINDFTEALRRGPKATEAFKREYRSTDLLMVDDVQFLAG 60 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K IQ EF + N++ Q+V +D+ P E+ L+ R+ +R G S + D R Sbjct: 61 KEKIQEEFFNTFNAITRENNQIVLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTR 120 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+N+ S +E+ LNI +V+ +A V T+ R+L+G FNQ+V + F+ +T E Sbjct: 121 VAILRNK---SDQEN--LNIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKMKFSKADVTVE 175 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A +L + + + + + IQ VA +++++ +DL +R + +V PRQ+AMYL++ Sbjct: 176 TARSILEKM-SFKRQRAITVPIIQDTVATYFDVTIDDLNGKKRNKEIVVPRQIAMYLARE 234 Query: 452 MT 453 +T Sbjct: 235 LT 236 >gi|283852476|ref|ZP_06369744.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio sp. FW1012B] gi|283572084|gb|EFC20076.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio sp. FW1012B] Length = 446 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 101/413 (24%), Positives = 193/413 (46%), Gaps = 43/413 (10%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 P + AW + ++ +LF+++ S+ G VR +P Sbjct: 54 PHAYFAAWFET----SVKELFEKQASQFLGPGYAVRYQ-----------------TPCRG 92 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 N LG ++ P RF F TF+ NR L A+ +A VR Sbjct: 93 NGHTPLPQLGAPRVTDF---PFGHRFTFETFLANEKNRFPLALAREVARG-----REVRY 144 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NP + G GKTHLL+A+ANA + Q V + + + R+A++ + ++ Sbjct: 145 NPFLVCGPSGSGKTHLLRAMANAVARSQAGASVFFGSVDDLQNRYATSQSRH---EIRSE 201 Query: 257 LRNIDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + D L ID++ +Q ++ E L N+ D+ KQ+V ++ + + DP +SR Sbjct: 202 VAAHDWLFIDELTDIQRAPDLEQELIFLFNAFHDAGKQMVFSSRERTASCDFFDPTFKSR 261 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L+ G+ V + D ++R + ++ + D +L ++ E ++ +A + R+L+G Sbjct: 262 LEWGLMVHVKPPDLDVRIASVE-----AANRDKRLGLSREQVLTLA-SRFEGFRQLEGVL 315 Query: 376 NQL--VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 ++ RH+ + AE + + L ++ ++ E I + A+H+ ++ ++ Sbjct: 316 LRIEAFRRHAGQELTEAEFSRHI--RLSVDRKSPELSPERILTVCAEHFGLTVAAIIGQS 373 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 R R +V RQ AM L + + S+P +G+ FG +DH+TVL+++RK +++ + D Sbjct: 374 RRRELVFARQAAMALCRTLLGMSYPALGKVFGGKDHSTVLYSIRKFQQIQDDD 426 >gi|330444487|ref|YP_004377473.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] gi|328807597|gb|AEB41770.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] Length = 461 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 91/326 (27%), Positives = 167/326 (51%), Gaps = 15/326 (4%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 FS+F+ S N + Q A ++ + NP+++ G GKTHL+QA + + R Sbjct: 110 FSSFLVSSENDLPFRILQEFARIEEG--KSFPFNPIYLFGPEGAGKTHLMQAAIH--MLR 165 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 + +V+Y++++ F SAIR + RN+D L I++++ GK Q EF H Sbjct: 166 ESCDKVLYVSSDLFTEHLVSAIRSGEMQRFRAFYRNVDALFIENIEVFSGKNATQEEFFH 225 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 NSL K +V ++ P++L++++ R+ SR + GV VP+ +R L+N L + Sbjct: 226 TFNSLHTEGKLIVISSCYAPADLKAMEERLISRFEWGVVVPIQ----PLRTEGLRN-LLM 280 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE----LLS 398 Q E + I E L + +++ + + L A L R ++ + + ++ LL Sbjct: 281 RQAEIQGIRIQEFALDFLISSLSANVKNLLHAIGLLSKRVAYKKLSQQLLYEDDIRTLLK 340 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ ++ ++ I R V+++Y +++ +L + R V PRQ+AMYL + SF Sbjct: 341 DVLEIAKSVRLTPNGIIRAVSRYYGVTQESILGRSQSREYVLPRQIAMYLCRQKLALSFV 400 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLE 484 IG F RDH+TV+ ++R + + +E Sbjct: 401 RIGDIFS-RDHSTVISSIRLIAQKVE 425 >gi|302543965|ref|ZP_07296307.1| DnaA protein [Streptomyces hygroscopicus ATCC 53653] gi|302461583|gb|EFL24676.1| DnaA protein [Streptomyces himastatinicus ATCC 53653] Length = 531 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/217 (37%), Positives = 124/217 (57%), Gaps = 10/217 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +++F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI Sbjct: 313 LNPKYLFDTFVIGASNRFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIG 367 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + P RV Y+++E F F ++IRD A + R++D+LL+DD+QFL K Sbjct: 368 HYARSLYPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDMDILLVDDIQFLASKEST 427 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 428 QEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 487 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 + + Q P L R + REL+G Sbjct: 488 RKKAVQEQLNAPPGGARVHRLPESTRNI----RELEG 520 >gi|218887171|ref|YP_002436492.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758125|gb|ACL09024.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 444 Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/354 (27%), Positives = 179/354 (50%), Gaps = 25/354 (7%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P +RF F TF+ N+ + +A+ +A + V NP + G GKTHLL+AI Sbjct: 97 PFGARFTFDTFLSNRKNQFPVASAKEVARDGRDPHDRV-YNPFVVCGGNGNGKTHLLRAI 155 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFA--SAIRDNCALNLKDSLRNI---DLLLIDDMQFL 271 AN + + + + RF SA A + + + ++L++DD+Q L Sbjct: 156 ANELSRSRDENAIFCGPVDELGTRFEGLSATGAGAAQERQQARSRLCAHEVLVVDDLQRL 215 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 + + +Q E + D KQ+V A ++L+ L P++RSRL+ G+ V L D + Sbjct: 216 RDQPFLQDELTFAFDHFHDHGKQMVFACSGKLADLDFLSPKLRSRLEWGLIVELREPDLD 275 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG------AFNQLVFRHSF 384 +R ++ Q + +++E + +A+ R L G A+ QLV R Sbjct: 276 VRLKFIQQ-----QSRSRNIQLSKEHSLTLAQRFREF-RHLQGILVKVGAYRQLVNRD-- 327 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 I E+ +++L H ++G+ + + + A+ + I D++ ++R + +V+ RQV Sbjct: 328 --IQDREL-EQILRH-TDSGKGNSLTPDAVIAATAEQFGIPARDIIGDKRQQHIVQARQV 383 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 AM+L + + SFP +GR FG +DH+T ++AVRK++++ ++D ++ V LKR Sbjct: 384 AMFLCRELLGSSFPALGRVFGGKDHSTAMYAVRKIKQLQQSDKDMQLLVTDLKR 437 >gi|86169607|gb|ABC87043.1| chromosomal replication initiation protein [Weissella paramesenteroides] Length = 244 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 10/240 (4%) Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN--LKDSLRNIDLLLIDDMQFLQ 272 AI N ++R PN V ++T E F+ F A+R K R+ DLL++DD+QFL Sbjct: 1 AIGNKVLERTPNANVKFITTEDFINDFTEALRRGQKETEAFKREYRSTDLLMVDDVQFLA 60 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK IQ EF + N++ Q+V +D+ P E+ L+ R+ +R G S + D Sbjct: 61 GKEKIQEEFFNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPT 120 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+N+ + L+I +V+ +A V T+ R+L+G FNQ+V + F+ + +T Sbjct: 121 RVAILRNKSDLEN-----LSIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKMRFSNVPVTV 175 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A +L + N + + I IQ VA +N++ DL +R + +V PRQ+AMY+++ Sbjct: 176 ETARTILETM-NFKRQRAITIPIIQEAVANFFNVTVQDLNGKKRNKEIVVPRQIAMYIAR 234 >gi|256830860|ref|YP_003159588.1| Sigma 54 interacting domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256580036|gb|ACU91172.1| Sigma 54 interacting domain protein [Desulfomicrobium baculatum DSM 4028] Length = 426 Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 104/346 (30%), Positives = 173/346 (50%), Gaps = 41/346 (11%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P S F+F F+ + N L +AQ +A+ Y NP + G GK+ LL+AI Sbjct: 91 PFGSEFIFDNFLVNNKNYFPLASAQEVAQSREAPY-----NPFVLCGESGSGKSFLLRAI 145 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ------F 270 ANA + + Y+ + S+ D + L ++ LL +DD+Q + Sbjct: 146 ANA--RSEHGADGSYVGGIEDLHELYSSRSDA-----RKFLTSMQLLAVDDLQEIARYRY 198 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQG+L+ L + KQ+V A L P+++SRL+ G+SV L D + Sbjct: 199 LQGELLA-----LFDHFHLQRKQMVFACTGKVGGYTFLAPKLKSRLEWGLSVMLKAPDLD 253 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG------AFNQLVFRHSF 384 +R + A S+ + +L+++++ ++ +A+ R L+G A+ +LV H Sbjct: 254 IR-----TQYAQSRCRERRLDLSKDRILLLAQRFADL-RNLEGCLLKLWAYRELVHDH-- 305 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 ++ E D +L++L + T + +E I V +N+ D+LS+ R +V RQV Sbjct: 306 ---ISDEEFDNILNYLDDRAVTS-LSVEQILDAVCSKFNLKPEDILSSGRRHDLVFARQV 361 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 AMYL + SFPE+GR FG RDH+TVL++ RKVE++ D ++K Sbjct: 362 AMYLCRKHLGLSFPELGRAFGGRDHSTVLYSCRKVEQLQRDDKSIK 407 >gi|62177288|gb|AAX70927.1| chromosomal replication initiator protein DnaA [Mycoplasma hominis ATCC 23114] Length = 463 Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 119/454 (26%), Positives = 214/454 (47%), Gaps = 48/454 (10%) Query: 52 PDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETITK----LFQEEHSRIQ 105 P +Y + L+ + ++++ V P + L +IKN + E+I + ++ EE++ Sbjct: 29 PLIYDQFLSSLEIVKENNKMIYILVKGPEDVL-TYIKNSHNESIKRAIKNVYGEEYN--- 84 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPIN--TNISKSPIILGKQTISPVFGSPLDSRFV 163 LV L ++ +S +I SP N TN SK S + Sbjct: 85 ----LVYIRNLDEIKSLQNSNNIE--SPTNSLTNNSKENF------------SNIKKNLT 126 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F + G N +AL AA++I + + +PLFIHAS GLGKTHLL AI N +K Sbjct: 127 FDDYAIGKFNNMALKAAKAICNSEK-----ILFSPLFIHASSGLGKTHLLHAIGNELLKH 181 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLK---DSLRNIDLLLIDDMQ-FLQGKLIQHE 279 +Y+ + R ++ + D L + D L+ DD+Q + + Sbjct: 182 GR--SALYINPDSLTRRLVEQLKSKNQEQINKIIDELMSYDCLMFDDVQQYGNRDSTLNV 239 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 +++++++ + KQ++ D+ P +L + R +R GG++V + + +ILK + Sbjct: 240 LFNIIDNMIMNDKQIIFCGDKKPDDLGGFEQRFITRFNGGLTVEILKPELNDVINILKFK 299 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIA--DEL 396 L +P+L EE L +AR ++S R ++GA N++ +F+ T +I + Sbjct: 300 LQ-ENGINPEL-WEEESLKFIARNFSSSIRNIEGAINRIKLFQDGDDGFFTYDINTIKSI 357 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 + + E + + I V+K+Y I R +LSN R VV R++A YL + + Sbjct: 358 FNSMTQVAEN--ITPDKIIDAVSKYYKIDRKKILSNVRTNDVVNARRIATYLVNKIFNYT 415 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 EIG+ G++ H+ V+ ++ +EK ++ TLK Sbjct: 416 LQEIGKVVGNQSHSNVIVSLNWIEKNANSNPTLK 449 >gi|284931012|gb|ADC30950.1| chromosomal replication initiator protein DnaA [Mycoplasma gallisepticum str. F] Length = 461 Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 181/361 (50%), Gaps = 21/361 (5%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K I+P+ + ++ F ++ N+ A+ A+ IA +H NP+ I G Sbjct: 111 KYKINPL-SKGIKEKYNFGNYLVFEFNKEAVYLAKQIANKTTHS----NWNPIIIEGKPG 165 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI--RDNCAL-NLKDSLRNIDLL 263 GK+HLLQAIAN K P ++ L+++ F F ++ D + + K ++ DLL Sbjct: 166 YGKSHLLQAIANERQKLFPEEKICVLSSDDFGSEFLKSVIAPDPTHIESFKSKYKDYDLL 225 Query: 264 LIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELES-LDPRIRSRLQGGVS 321 +IDD+Q + + +E F + NSL+D K +V D E++ L R+ SR Q G++ Sbjct: 226 MIDDVQIISNRPKTNETFFTIFNSLVDQKKTIVITLDCKIEEIQDKLTARMISRFQKGIN 285 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + I K + + E +++ V+ ++ R+++G+ + LVF Sbjct: 286 VRINQPNKNEIIQIFKQKFKENNLEKY---MDDHVIEEISDFDEGDIRKIEGSVSTLVFM 342 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRI--EDIQRMVAK---HYNISRNDLLSNRRVR 436 + + + D++L + +K I +D + + K H+N+S + L S++R + Sbjct: 343 NQMYG--STKTKDQILKSFIEKVTNRKNLILSKDPKYVFDKIKYHFNVSEDALKSSKRKK 400 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V+ R + MY+ K + ++ +IG+ +DHTTV H + KVE+ LE D LK ++L Sbjct: 401 EIVQARHICMYILKNVYNKNLSQIGKLLR-KDHTTVRHGIDKVEEELENDPNLKSFLDLF 459 Query: 497 K 497 K Sbjct: 460 K 460 >gi|297171395|gb|ADI22398.1| ATPase involved in DNA replication initiation [uncultured Planctomycetales bacterium HF0500_02G17] Length = 444 Score = 127 bits (318), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 103/348 (29%), Positives = 162/348 (46%), Gaps = 36/348 (10%) Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 R F+ G SNR+A AA IAE G +PLF+H G+GKTHLL+ IA + Sbjct: 74 RARLEDFLVGESNRLAHRAALRIAE----GIDDAAFSPLFLHGPSGVGKTHLLEGIARRT 129 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 +R P RV Y+TAE F F +AI++ + + + R + LL IDD+ FL+GK Q E Sbjct: 130 QERNPGARVRYVTAEAFTNEFINAIQNRGMDSFRKTWRGVTLLCIDDVHFLRGKQSTQTE 189 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI---L 336 H L+++ ++V A+D PP ++ L ++ SR GG V + D + + L Sbjct: 190 LLHTLDAVGLRQARIVLASDEPPRKIAELSDQLVSRFMGGAVVRIDEPDDALCRQLLVAL 249 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--------------RH 382 R + ED + + L R V RE++G Q+ Sbjct: 250 AARRGLVFTEDGISMLVQRALEQNRRNV----REIEGLLTQVAAVRRLLPCESRSEPGSR 305 Query: 383 SFAPILTAEIADELLSHLVNTGETKK-------MRIEDIQRMVAKHYNISRNDLLSNRRV 435 S PI + + LL+ G + K +R++ I R + ++ DL R Sbjct: 306 SGGPIDSDAVRTALLA---GEGASAKRPAQRGPIRLDAIIRTCCEQMRVTTEDLFGRGRH 362 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 R VV R + + L++ T S+PEI R +H+TV+ A +++ + Sbjct: 363 RRVVLTRGLIVTLAREFTTLSYPEIARGMKRPNHSTVITAFNRMKGQI 410 >gi|225011346|ref|ZP_03701799.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium MS024-3C] gi|225004508|gb|EEG42477.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium MS024-3C] Length = 210 Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 70/213 (32%), Positives = 125/213 (58%), Gaps = 7/213 (3%) Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + KQV+ +D+ P +++ ++ R+ SR + G+S L D+E R SILKN+L Sbjct: 4 NGKQVILTSDKAPVDMQDIEQRLLSRFKWGLSAELQTPDFETRVSILKNKLY-----KDG 58 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 + ++E+++ +VA+ + T+ REL+GA L+ + SF + ++A +++ V + ++ Sbjct: 59 VEMSEDIIDYVAKNIKTNVRELEGAIISLIAQSSFNKKEVNIDLAQQIVEKFVKNTK-RE 117 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I+ IQ++V+ ++ + L S R R +V+ RQ+AM+ +K T S IG + G RD Sbjct: 118 VSIDYIQKVVSDYFEMDVTTLQSKTRKRHIVQARQLAMFFAKKFTKASLASIGTQIGKRD 177 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 H TVLHA + V+ + ETD KK +E L + S Sbjct: 178 HATVLHACKTVDNLAETDKQFKKYIEDLTKKFS 210 >gi|269114778|ref|YP_003302541.1| Chromosomal replication initiator protein [Mycoplasma hominis] gi|268322403|emb|CAX37138.1| Chromosomal replication initiator protein [Mycoplasma hominis ATCC 23114] Length = 463 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 119/454 (26%), Positives = 213/454 (46%), Gaps = 48/454 (10%) Query: 52 PDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETITK----LFQEEHSRIQ 105 P +Y + L+ + ++++ V P + L +IKN + E+I + ++ EE++ Sbjct: 29 PLIYDQFLSSLEIVKENNKMIYILVKGPEDVL-TYIKNSHNESIKRAIKNVYGEEYN--- 84 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPIN--TNISKSPIILGKQTISPVFGSPLDSRFV 163 LV L ++ +S +I SP N TN SK S + Sbjct: 85 ----LVYIRNLDEIKSLQNSNNIE--SPTNSLTNNSKENF------------SNIKKNLT 126 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F + G N +AL AA++I + + +PLFIHAS GLGKTHLL AI N +K Sbjct: 127 FDDYAIGKFNNMALKAAKAICNSEK-----ILFSPLFIHASSGLGKTHLLHAIGNELLKH 181 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLK---DSLRNIDLLLIDDMQ-FLQGKLIQHE 279 +Y+ + R ++ + D L + D L+ DD+Q + + Sbjct: 182 GR--SALYINPDSLTRRLVEQLKSKNQEQINKIIDELMSYDCLMFDDVQQYGNRDSTLNV 239 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 +++++++ + KQ++ D+ P +L + R +R GG++V + + +ILK + Sbjct: 240 LFNIIDNMIMNDKQIIFCGDKKPDDLGGFEQRFITRFNGGLTVEILKPELNDVINILKFK 299 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIA--DEL 396 L +P+L EE L +AR ++S R ++GA N++ +F+ T +I + Sbjct: 300 LQ-ENGINPEL-WEEESLKFIARNFSSSIRNIEGAINRIKLFQDGDDGFFTYDINTIKSI 357 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 + + E + + I V+K+Y I R +LSN R VV R++A YL + Sbjct: 358 FNSMTQVAEN--ITPDKIIDAVSKYYKIDRKKILSNVRTNDVVNARRIATYLVNKNFNYT 415 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 EIG+ G++ H+ V+ ++ +EK ++ TLK Sbjct: 416 LQEIGKVVGNQSHSNVIVSLNWIEKNANSNPTLK 449 >gi|31544207|ref|NP_852785.1| chromosomal replication initiator protein DnaA [Mycoplasma gallisepticum str. R(low)] gi|31541051|gb|AAP56353.1| chromosomal replication initiator protein DnaA [Mycoplasma gallisepticum str. R(low)] gi|284930245|gb|ADC30184.1| chromosomal replication initiator protein DnaA [Mycoplasma gallisepticum str. R(high)] Length = 461 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/361 (27%), Positives = 181/361 (50%), Gaps = 21/361 (5%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K I+P+ + ++ F ++ N+ A+ A+ IA +H NP+ I G Sbjct: 111 KYKINPL-SKGIKEKYNFGNYLVFEFNKEAVYLAKQIANKTTHS----NWNPIIIEGKPG 165 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI--RDNCAL-NLKDSLRNIDLL 263 GK+HLLQAIAN K P ++ L+++ F F ++ D + + K ++ DLL Sbjct: 166 YGKSHLLQAIANERQKLFPEEKICVLSSDDFGSEFLKSVIAPDPTHIESFKSKYKDYDLL 225 Query: 264 LIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELES-LDPRIRSRLQGGVS 321 +IDD+Q + + +E F + NSL+D K +V D E++ L R+ SR Q G++ Sbjct: 226 MIDDVQIISNRPKTNETFFTIFNSLVDQKKTIVITLDCKIEEIQDKLTARMISRFQKGIN 285 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + I K + + E +++ V+ ++ R+++G+ + LVF Sbjct: 286 VRINQPNKNEIIQIFKQKFKENNLEKY---MDDHVIEEISDFDEGDIRKIEGSVSTLVFM 342 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRI--EDIQRMVAK---HYNISRNDLLSNRRVR 436 + + + D++L + +K I +D + + K H+N+S + L S++R + Sbjct: 343 NQMYG--STKTKDQILKSFIEKVTNRKNLILSKDPKYVFDKIKYHFNVSEDVLKSSKRKK 400 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V+ R + MY+ K + ++ +IG+ +DHTTV H + KVE+ LE D LK ++L Sbjct: 401 EIVQARHICMYVLKNVYNKNLSQIGKLLR-KDHTTVRHGIDKVEEELENDPNLKSFLDLF 459 Query: 497 K 497 K Sbjct: 460 K 460 >gi|78355048|ref|YP_386497.1| chromosomal replication initiator protein DnaA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217453|gb|ABB36802.1| chromosomal replication initiator protein DnaA [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 436 Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 118/446 (26%), Positives = 200/446 (44%), Gaps = 43/446 (9%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 WF L + + P F W + + F+ E + G Sbjct: 22 WFDPLDITLADEKRLEVRFPHRFFAEWFSTQ----VQGRFESELNTFMGEGT-------- 69 Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 +VE T T P+ +S SP L +S +P + F TFI N + Sbjct: 70 TVEYT------TGCCPV---LSSSP--LPPAAVSKKLSAPFGREYTFETFISNKRNFFPV 118 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 +A+ +A + +R NP + G GKTHLL+AIAN K + T + Sbjct: 119 ASARELARQEEE----IRYNPFVLCGPAGSGKTHLLRAIANELSKTVYKKHIFISTIDDL 174 Query: 238 MWRFAS-AIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVA 296 F++ D + + S + LL Q +L Q E L NS D KQ+V Sbjct: 175 GTLFSNNGSGDPAQVRQQLSACHYLLLDDLHRLREQPQL-QDELTVLFNSFYDRQKQMVF 233 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 SEL+ L+ +RSRL+ G+ V + D E+ + ++ + + KL + +E Sbjct: 234 TCPGKLSELDFLETGLRSRLEWGLIVTMKPPDLEILVTFIQRQCKLH-----KLQLAKEH 288 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD----ELLSHLVNTGETKKMRIE 412 + +A+ R L G N+L ++ ++ +AD ++LSH G + + + Sbjct: 289 VFTLAQRFR-DFRHLQGVLNRLT---AYRDLVNRTLADTDFEQVLSH-TEAGAGRPLTAD 343 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I + A +++ D+ ++R + VV RQVAMYL + + S+P +GR FG +DH+T Sbjct: 344 RIIALCAGRFSLPPKDVTGDKRHQKVVLARQVAMYLCRELMGSSYPVLGRTFGGKDHSTA 403 Query: 473 LHAVRKVEKMLETDITLKKEVELLKR 498 ++AV+K++KM+++D T ++ V LK+ Sbjct: 404 MYAVKKIKKMIDSDKTTRQLVTELKK 429 >gi|86169611|gb|ABC87045.1| chromosomal replication initiation protein [Weissella confusa] Length = 233 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 12/228 (5%) Query: 228 RVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 R+ ++T E F+ F A+R N K R+ DLLL+DD+QFL K IQ EF H Sbjct: 12 RLKFITTEDFINDFTDALRRGANATEAFKQEYRSADLLLVDDIQFLADKDKIQEEFFHTF 71 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N++ Q+V +D+ P E+ L+ R+ +R G S + D R +IL+N+ Sbjct: 72 NAITRENHQIVLTSDKLPKEIPGLEMRLVTRFAQGYSANITKPDLPTRVAILRNK----- 126 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV--FRHSFAPILTAEIADELLSHLVN 402 E LNI +V+ +A V T+ R+L+G FNQ+ R + AP+ T E A ++L + N Sbjct: 127 AEQENLNIPNDVIDEIAAAVDTNVRDLEGVFNQVAGKLRFATAPV-TVETARDILETM-N 184 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + I IQ VAK +N++ DL +R + +V PRQ+AMY+++ Sbjct: 185 FKRQRAITIPIIQETVAKFFNVTVQDLNGKKRNKEIVVPRQIAMYIAR 232 >gi|317155007|ref|YP_004123055.1| Chromosomal replication initiator DnaA domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316945258|gb|ADU64309.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 460 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/339 (25%), Positives = 168/339 (49%), Gaps = 27/339 (7%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P F F TF+ N + +A+ +A+ + NP + G GKTHL++A+ Sbjct: 125 PFGQEFTFDTFLINKKNYFPIASAREVAK-----QSASLFNPFIVCGPGGSGKTHLIRAV 179 Query: 217 ANASIKRQPNLRVVYLTAE----YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL- 271 AN K+ + ++ + + ++ RF ++ L + L IDD Q + Sbjct: 180 ANEISKKHDHSKIFIGSMDELNSFYTIRFKGD-----PFRARNHLFEYNFLFIDDFQKIR 234 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 + Q E +L N D+ KQ++ + + LD ++SRL G+ V L D E+ Sbjct: 235 EHPHFQQEVVNLFNHFYDNKKQMIICCRDKLASYDFLDESLQSRLGWGLIVTLKEADLEI 294 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R ++ + + +L +++E ++ +A+ T R L G +L +F ++ E Sbjct: 295 RVGYIQRQCRLK-----RLLLSKEQVLTLAQHFT-DFRYLQGVLLKLF---AFKELVKKE 345 Query: 392 IADELLSHLV-NTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + H++ NT E T + + I +V++H++++ +L +R + + + RQVAM+L Sbjct: 346 MTQRDFEHIMANTEEKTTDDLTPKKIMTVVSEHFSVNIKELTGTKRHQNIAQARQVAMFL 405 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 + + S+P +GR FG +DH+TVL++V+K+E++ E D Sbjct: 406 CRQLLNTSYPALGRAFGGKDHSTVLYSVKKIEQLQEDDF 444 >gi|86169615|gb|ABC87047.1| chromosomal replication initiation protein [Weissella halotolerans] Length = 224 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 131/230 (56%), Gaps = 12/230 (5%) Query: 226 NLRVVYLTAEYFMWRFASAIRDN--CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 N +V ++T E F+ F A+R K R+ DLL++DD+QFL GK IQ EF + Sbjct: 1 NAKVKFITTEDFINDFTEALRRGPKATEAFKREYRSTDLLMVDDVQFLSGKEKIQEEFFN 60 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 N++ Q+V +D+ P E+ L+ R+ +R G S + D R +IL+N+ Sbjct: 61 TFNAITRENNQIVLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILRNK--- 117 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV--FRHSFAPILTAEIADELLSHL 400 S +E LNI +V+ +A V T+ R+L+G FNQ+V R S API T + A +L + Sbjct: 118 SDQE--GLNIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKMRFSNAPI-TVDTARSILETM 174 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 N + + I IQ +VA++Y+++ +D+ +R + +V PRQVAMYL++ Sbjct: 175 -NFKRQRAITIPIIQDIVARYYDVTVSDINGKKRNKEIVVPRQVAMYLAR 223 >gi|283778829|ref|YP_003369584.1| chromosomal replication initiator DnaA domain-containing protein [Pirellula staleyi DSM 6068] gi|283437282|gb|ADB15724.1| Chromosomal replication initiator DnaA domain protein [Pirellula staleyi DSM 6068] Length = 398 Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 101/387 (26%), Positives = 181/387 (46%), Gaps = 40/387 (10%) Query: 145 LGKQTISPVFGSP----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + + ++ VF P L S +I GS N + AA+ + + D +NPL Sbjct: 1 MTSRVVTSVFTVPPTELLGSPATRPAWIAGSENALVQIAAEVVLQHDDRRRW---MNPLV 57 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 S G GKT L+Q +A+ + P V++ A F +A A+ + + + Sbjct: 58 FCGSSGAGKTSLVQILADEKRRLAPKSNVLHEVATDFARSYAHAVDTDSIADFRAKHTRC 117 Query: 261 DLLLIDDMQFLQGKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLL++DD+ L GK Q E ++++++ V+ P+ L P + SR+ G Sbjct: 118 DLLVLDDLHRLAGKAAAQQELIAVIDAMIRRGALVLLTLKNLPAATRGLLPMLASRISQG 177 Query: 320 VSVPLGLHDYEMRFSILK---------------NRLAISQKEDPKLNINEEVLMHV---- 360 +++ L L E R ++L+ +LA++ P +++ L H Sbjct: 178 LTLSLALPGVEARDALLRVIAAQQGLLLPEELAEQLAMAIAARPAGSLSATQLRHFVIEL 237 Query: 361 ----ARTVTTSGRELD--------GAFNQLVFRHSFAPILTAEIADELLSHLVNTGETK- 407 A + E+D G +L + + A A + ++ L++ Sbjct: 238 ARWFADQPASRAAEVDVETPRAPRGRPAKLPPLEAASNPPAATSAADFIAQLLSLRTADL 297 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 K + + ++VA+HY +S DL R +++V+ R +AM++++ +T SF ++G+ FG+R Sbjct: 298 KTTLRQVTQLVARHYQLSPADLRGQSRQQSLVQGRSLAMFIARSLTEASFADVGKFFGNR 357 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVE 494 DHTTVLHA RK++ LE D+TLK V+ Sbjct: 358 DHTTVLHACRKIQSQLEKDVTLKSLVD 384 >gi|86169595|gb|ABC87037.1| chromosomal replication initiation protein [Leuconostoc gelidum KCTC 3527] Length = 231 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 129/231 (55%), Gaps = 12/231 (5%) Query: 225 PNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 P+ R+ Y TAE F+ F ++R + K R +DLLLIDD+QF GK +Q EF Sbjct: 7 PSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRTVDLLLIDDIQFWSGKEKVQEEFF 66 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N L + KQ++ +D+ P+E+ L R+ SR + G+S+ + D R +ILKN LA Sbjct: 67 NTFNVLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQKPDLPTRVAILKN-LA 125 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTAEIADELLSH 399 E L I +VL +A + ++ R L+G F++ + R+ P T E A ++L Sbjct: 126 ----ETDNLEIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRYRNKPA-TKETAQKILGD 180 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 L N + K+ +E IQ++VA +Y + +DL S R + +V R VAMYL++ Sbjct: 181 L-NINQGFKITVERIQQVVADYYMQTIDDLKSTSRKKDLVTARHVAMYLTR 230 >gi|261884959|ref|ZP_06008998.1| chromosomal replication initiation protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 311 Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 89/333 (26%), Positives = 158/333 (47%), Gaps = 40/333 (12%) Query: 46 LKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 L ++ + ++ ++KF+ S NI+ + P + +I+ RY I +F+ Sbjct: 10 LGQEISKNEMENYISQIKFNEKSSNSENII-FTAPNELVAKFIQTRYANKIANIFEV--- 65 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 KT P I+ + N K+ I KQ + S L+ + Sbjct: 66 ------------------KTGIKPVISITTQKNRVSIKAKDIDVKQIRTQ--SSLLNPSY 105 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F +F+ G SN+ A ++Q A+ Y NPLFI+ S GLGKTHLLQ+I N ++ Sbjct: 106 TFESFVVGDSNQFAYISSQQAAQNPGKVY-----NPLFIYGSTGLGKTHLLQSIGNYCLE 160 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QGKLIQHEFC 281 V+ +T+E FM F + + K+ RN D+LLIDD+QF + + Q EF Sbjct: 161 HGKT--VICVTSEQFMSDFIRNVENRTMNKFKEKYRNCDILLIDDIQFFHKSEKTQEEFF 218 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N + Q+V +D+PP L+ + R++SR + G+ + + + + I+K + Sbjct: 219 HTFNEIHAKKGQIVMTSDKPPKMLKGFEERLKSRFEWGLMADITPPELDTKIRIIKAKC- 277 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 E +N++ +++ ++A + + RE++ A Sbjct: 278 ----EFDGINLSSDIIEYIATNMGDNIREIESA 306 >gi|304319871|ref|YP_003853514.1| chromosomal replication initiator protein DnaA [Parvularcula bermudensis HTCC2503] gi|303298774|gb|ADM08373.1| chromosomal replication initiator protein DnaA [Parvularcula bermudensis HTCC2503] Length = 503 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 123/500 (24%), Positives = 207/500 (41%), Gaps = 54/500 (10%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E F L+ + G Y S+F L ++ + I + Y + Sbjct: 7 ELCFAAFKRGLETRFGEMTYKSYFAGLTLRDWTEQRAVIATDNRYQAERITHWYADEFIS 66 Query: 96 LFQEEHSRIQGVEIL----VRSV-----------ALPSVE--------KTASSPSITKLS 132 + R++ +E+ +RSV A PSV+ + S P +L Sbjct: 67 TWDVHCGRVEEIELTGGAGMRSVITKSKASRSAGARPSVQLSVARRADRAVSRPVTPQLP 126 Query: 133 PINTNISKSPIILGKQTISPVFGSPLDS------RF--------VFSTFIEGSSNRVALT 178 P +++ SP+ K+T P S RF F +F +NR+A+ Sbjct: 127 P-RKSMATSPV--AKETDRHTATEPTTSEGEGSERFNDNFNVSQTFESFSVNDTNRMAVL 183 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 A + I E T +I+ VG GK+HLL A AN ++R P R+++LT + + Sbjct: 184 AIEQIIEGAGSPVT-------YIYGGVGRGKSHLLSAAANQFLRRYPGRRLIFLTYDSLV 236 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAA 297 + AI L+ LR+ DLL+ DD+ L+G K Q E L+ L K ++ Sbjct: 237 ADVSDAIVSRSLKELRAHLRDTDLLIFDDVHMLRGRKRTQEELACLIERLEQMGKPILVT 296 Query: 298 ADRPPSELESLD--PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 P EL R+ RL GG VPL DY++R I + R + L + Sbjct: 297 GAVSPKELAETGILCRLTDRLGGGARVPLNRPDYDLRLKIAQ-RCSDVFTLRTGLQMPRR 355 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMR--IED 413 + ++AR REL GA P + ++ E +HL ++++ ++D Sbjct: 356 HIEYIARKSEGCVRELLGAMRFYELSVQLDPTVLSKDDQETQAHLAQVLKSRRRETTLDD 415 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 + + A + + ++DL R R +V R ++ +T IG RDHTTV+ Sbjct: 416 VFDVTADQFGVGKDDLRGKSRKRYLVHARHAFALAARRLTDAPLAAIGGML-QRDHTTVI 474 Query: 474 HAVRKVEKMLETDITLKKEV 493 +++ K E + E+D +++ Sbjct: 475 NSITKGEILAESDQAFGEKI 494 >gi|301060278|ref|ZP_07201144.1| putative chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] gi|300445621|gb|EFK09520.1| putative chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] Length = 317 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 85/308 (27%), Positives = 161/308 (52%), Gaps = 13/308 (4%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 + NPL+I++ GKTHLLQAI N ++K + + +YL+AE + RF I + + Sbjct: 15 KYNPLYIYSKWSSGKTHLLQAIGNEAMKGASHKKAIYLSAENIISRFDKIIAEKST-SFW 73 Query: 255 DSLRNIDLLLIDDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + LL+DD + K Q E L L+S +Q+V AA PP+++ +L P++R Sbjct: 74 GKEKPPRFLLLDDFDTVASNKSSQKELLSLCTQFLESKRQLVVAASVPPNQIRNLLPQLR 133 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK-LNINEEVLMHVARTVTTSGRELD 372 SRL+ G+ + D + + + + QK K + + +A T +L Sbjct: 134 SRLEWGLITEIKTPDQKTKMKL------VHQKTKQKGIQFQADATFFLASTTN----DLK 183 Query: 373 GAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 +Q+ A + + ++ ++ + ++ E IQ + AK++ IS +DLLS Sbjct: 184 NLVHQIDKIKIHASLYGNNMDISIVQSILGNERSARINPEHIQDITAKYFGISPSDLLSR 243 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 R R + PRQ+A++L++ T S EIG+ FG++ H+++++++ +EK L++ I + ++ Sbjct: 244 NRQRKISYPRQIAIFLTRKYTDLSLEEIGKAFGNKHHSSIIYSINSIEKDLKSKIEVIED 303 Query: 493 VELLKRLI 500 + ++ I Sbjct: 304 INKIRGFI 311 >gi|149003109|ref|ZP_01828018.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS69] gi|147758850|gb|EDK65846.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS69] Length = 270 Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 69/167 (41%), Positives = 96/167 (57%), Gaps = 7/167 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRF 270 >gi|225550892|ref|ZP_03771841.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225380046|gb|EEH02408.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 457 Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/336 (25%), Positives = 159/336 (47%), Gaps = 22/336 (6%) Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 R+ F+ + NR A+ A +S+ + + NPLF+ VG+GKTH++ A N Sbjct: 113 RYNFNNLVISDFNRKAVKAIESLLSTNYENSSMC--NPLFLFGKVGIGKTHIVAAAGNQF 170 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCA--LNLKDSLRNIDLLLIDDMQFLQGKLIQH 278 PNL++ Y + F +F SA + K + + +LL+ +D+Q +Q + Sbjct: 171 ANSNPNLKIYYYEGQDFFRKFCSASAKGTSHVEEFKKEIASANLLIFEDIQNIQSRDSAA 230 Query: 279 E-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E F ++ N + + +++ +DR P+EL RI SRL G+ + D I+ Sbjct: 231 ELFFNIFNDIKLNGGKIILTSDRTPNELNGFHDRIISRLASGLQCKISQPDKNEAIKIIN 290 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH----------SFAPI 387 N +K I +E ++A T R++ G Q+ F + I Sbjct: 291 NWFEFKKK----YQITDEAKEYIAEGFHTDIRQMIGNLKQICFWADNDLNENLVITKDFI 346 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + + +++ S+++ ++++ E + ++AK N++ + + S R ++V R + Y Sbjct: 347 IECSVENDIPSNII---VKQQLKPEQVIEIIAKELNLNVDLIKSTTRKNSIVWARDIVCY 403 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + K + EIG+ R+HTT+ H+V KVEK+L Sbjct: 404 VLKNKLNLTLTEIGKLLSGREHTTISHSVNKVEKIL 439 >gi|209554480|ref|YP_002284414.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541981|gb|ACI60210.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 457 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/336 (25%), Positives = 158/336 (47%), Gaps = 22/336 (6%) Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 R+ F+ + NR A+ A +S+ + + NPLF+ VG+GKTH++ A N Sbjct: 113 RYNFNNLVISDFNRKAVKAIESLLSTNYENSSMC--NPLFLFGKVGIGKTHIVAAAGNQF 170 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCA--LNLKDSLRNIDLLLIDDMQFLQGKLIQH 278 PNL++ Y + F +F SA + K + + +LL+ +D+Q +Q + Sbjct: 171 ANSNPNLKIYYYEGQDFFRKFCSASAKGTSHVEEFKKEIASANLLIFEDIQNIQSRDSAA 230 Query: 279 E-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E F ++ N + + +++ +DR P+EL RI SRL G+ + D I+ Sbjct: 231 ELFFNIFNDIKLNGGKIILTSDRTPNELNGFHDRIISRLASGLQCKISQPDKNEAIKIIN 290 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH----------SFAPI 387 N +K I +E ++A T R++ G Q+ F + I Sbjct: 291 NWFEFKKK----YQITDEAKEYIAEGFHTDIRQMIGNLKQICFWADNDLNENLVITKDFI 346 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + + +++ S+++ ++++ E + ++AK N+ + + S R ++V R + Y Sbjct: 347 IECSVENDIPSNII---VKQQLKPEQVIEIIAKELNLKVDLIKSTTRKNSIVWARDIVCY 403 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + K + EIG+ R+HTT+ H+V KVEK+L Sbjct: 404 VLKNKLNLTLTEIGKLLSGREHTTISHSVNKVEKIL 439 >gi|171920679|ref|ZP_02931905.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178837|ref|ZP_02554521.2| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024340|ref|ZP_02570604.2| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518434|ref|ZP_02556546.2| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524209|ref|ZP_03004269.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867373|ref|ZP_03079377.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273421|ref|ZP_03205957.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551454|ref|ZP_03772400.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903415|gb|EDT49704.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209472|gb|EDU06515.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018604|gb|EDU56644.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998012|gb|EDU67109.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660031|gb|EDX53411.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660849|gb|EDX54102.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249941|gb|EDY74721.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379269|gb|EEH01634.1| chromosomal replication initiator protein DnaA [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 457 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 85/336 (25%), Positives = 158/336 (47%), Gaps = 22/336 (6%) Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 R+ F+ + NR A+ A +S+ + + NPLF+ VG+GKTH++ A N Sbjct: 113 RYNFNNLVISDFNRKAVKAIESLLSTNYENSSMC--NPLFLFGKVGIGKTHIVAAAGNQF 170 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCA--LNLKDSLRNIDLLLIDDMQFLQGKLIQH 278 PNL++ Y + F +F SA + K + + +LL+ +D+Q +Q + Sbjct: 171 ANSNPNLKIYYYEGQDFFRKFCSASAKGTSHVEEFKKEIASANLLIFEDIQNIQSRDSAA 230 Query: 279 E-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E F ++ N + + +++ +DR P+EL RI SRL G+ + D I+ Sbjct: 231 ELFFNIFNDIKLNGGKIILTSDRTPNELNGFHDRIISRLASGLQCKISQPDKNEAIKIIN 290 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH----------SFAPI 387 N +K I +E ++A T R++ G Q+ F + I Sbjct: 291 NWFEFKKK----YQITDEAKEYIAEGFHTDIRQMIGNLKQICFWADNDLNENLVITKDFI 346 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + + +++ S+++ ++++ E + ++AK N+ + + S R ++V R + Y Sbjct: 347 IECSVENDIPSNII---VKQQLKPEQVIEIIAKELNLKVDLIKSTTRKNSIVWARDIVCY 403 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + K + EIG+ R+HTT+ H+V KVEK+L Sbjct: 404 VLKNKLNLTLTEIGKLLSGREHTTISHSVNKVEKIL 439 >gi|116874488|gb|ABK30887.1| DnaA [Mycoplasma imitans] Length = 461 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 102/364 (28%), Positives = 184/364 (50%), Gaps = 27/364 (7%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE--VDSHGYTTVRLNPLFIHAS 204 K I+P+ + ++ FS ++ NR A+ A+ IAE +DS+ NP+ I Sbjct: 111 KYKINPL-SRGIKEKYNFSNYLVFEFNREAVYLAKQIAEKTIDSN------WNPIIIEGK 163 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI--RDNCAL-NLKDSLRNID 261 G GK+HLLQAIAN K P ++ L+++ F F ++ D + + K ++ D Sbjct: 164 PGYGKSHLLQAIANERQKLFPEEKICVLSSDDFGSEFLKSVIAPDPTHIESFKSKYKDYD 223 Query: 262 LLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELES-LDPRIRSRLQGG 319 LL+IDD+Q + + +E F + NSL+D K +V D E++ L+ R+ SR Q G Sbjct: 224 LLMIDDVQIISNRPKTNETFFTIFNSLVDQKKTIVITLDCKIEEIQDKLNARMISRFQRG 283 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + I K + + E +++ V+ ++ R+++G+ LV Sbjct: 284 INVRINQPNKNEIIKIFKQKFKENNLEKY---MDDHVIEEISDFDEGDIRKIEGSVATLV 340 Query: 380 FRHS-FAPILTAEIADELLSHLVNTGETKKMRI--EDIQRMVAK---HYNISRNDLLSNR 433 F + + T E ++L + +K I +D + + K H+NIS L S++ Sbjct: 341 FMNQIYGATKTKE---QILKSFIEKVTNRKNLILSKDPKYVFEKIKYHFNISEEALKSSK 397 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R + +V+ R + MY+ K + ++ +IG+ +DHTTV H + KV++ LE D LK + Sbjct: 398 RKKEIVQARHICMYILKKIYNQNLSQIGKLLK-KDHTTVRHGIDKVQEDLENDPNLKSFI 456 Query: 494 ELLK 497 ++ + Sbjct: 457 DIFR 460 >gi|303246808|ref|ZP_07333085.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio fructosovorans JJ] gi|302491825|gb|EFL51705.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio fructosovorans JJ] Length = 445 Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 103/413 (24%), Positives = 191/413 (46%), Gaps = 44/413 (10%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 P + W + ++ LF++E R G VR +T S K P+ Sbjct: 54 PHAYFATWFET----SVRDLFEKEVGRFLGDGYAVRY-------QTRCGGS-DKRQPL-- 99 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 T+ V P RF F TF+ N L A+ +A G R Sbjct: 100 -----------ATLRAVTDFPYGHRFTFETFLANEKNHFPLALAREVA-----GGREARY 143 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NP + G GKTHLL+A+ANA + +P+ V + + + R+A + ++ + Sbjct: 144 NPFLLCGPSGAGKTHLLRAMANAVSRSRPSAAVFFGSIDDIGNRYADPTAN--PHEIRAA 201 Query: 257 LRNIDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + D L ID++ ++ +++ E L N+ D+ KQ+V + + + P ++SR Sbjct: 202 IVASDFLFIDELADVKRDPILEQELVLLFNAFHDAGKQMVFSCRERVASCD-FGPTLKSR 260 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L+ G+ V L L D ++R +++ D +L ++ E + +A + R+L+G Sbjct: 261 LEWGLMVHLKLPDLDVRVRCVEH-----ANRDKRLGLSREQTLTLA-SRFEGFRQLEGVL 314 Query: 376 NQL--VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 ++ RH+ + AE+A + L + ++ E I + A+H+ + D+ + Sbjct: 315 LRIEAFRRHTGQELTDAELARHI--RLSEDRKAPELTPERILAICAEHFTLGVADITGHS 372 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 R + +V RQ AM L + + S+P +G+ FG +DH+TVL+++RK +++ + D Sbjct: 373 RRKELVFARQTAMALCRALLGMSYPALGKVFGGKDHSTVLYSIRKFQQLQDAD 425 >gi|323143414|ref|ZP_08078099.1| putative chromosomal replication initiator protein DnaA [Succinatimonas hippei YIT 12066] gi|322416819|gb|EFY07468.1| putative chromosomal replication initiator protein DnaA [Succinatimonas hippei YIT 12066] Length = 494 Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 92/337 (27%), Positives = 170/337 (50%), Gaps = 27/337 (8%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F ++ N++ A ++A T NP +I+ + GLGKTHLL AIAN + Sbjct: 155 TFENYVTDPENKLLYATAVAVAA----NPGTSNYNPFYIYGASGLGKTHLLFAIANRIRE 210 Query: 223 RQPNLRVVYLTAEYF-------MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGK 274 P + ++Y AE F M R D+ ++ +D + D+ ++DD+Q F++ Sbjct: 211 THPEVSLIYTRAEEFIRHYVESMARIKKNPYDDERMHFQDLYTSYDVFIVDDIQNFIKAD 270 Query: 275 LIQHEFCHLLNSLLDSA-KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 + F ++ +D +Q++ A+D PP L++ +PR+ SR GV E+ Sbjct: 271 KTRDTFFDIIADFIDQPNRQLILASDVPPGNLKNFNPRLTSRFGSGVCC-------EVVP 323 Query: 334 SILKNRLAISQKEDPKLNIN--EEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTA 390 + R AI+ K+ +LN + ++++ ++A + ++ RE++GA L + +F I T Sbjct: 324 PSPETRAAITLKKCKELNADLPDDIIQYIALHIRSNVREIEGAIKTLNTHKQAFGTI-TT 382 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A ++L +LVN + I+ I+ V+K + + + S + + V R AM L + Sbjct: 383 EDAVKILGNLVN-ASNQICTIDMIKERVSKEFGVPVPSMESAEKKKMVSIARATAMCLGR 441 Query: 451 IMTPR-SFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 + P S +IGR F ++DH++V A+++ +E D Sbjct: 442 DLIPALSLSDIGRNF-NKDHSSVHEAIKRTRTRIEED 477 >gi|86169605|gb|ABC87042.1| chromosomal replication initiation protein [Fructobacillus pseudoficulneus] Length = 227 Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 129/233 (55%), Gaps = 14/233 (6%) Query: 226 NLRVVYLTAEYFMWRFASAIRD------NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 N R+ Y TAE F+ F ++R+ N K + R++D+LLIDD+QF GK +Q Sbjct: 1 NARIKYATAEDFLNDFTDSLREGNKADSNATAKFKKTYRSLDMLLIDDIQFWSGKEKVQE 60 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF + N+L S KQ+V +DR P+++ L R+ SR + G++ + D R +IL+N Sbjct: 61 EFFNTFNALTKSGKQIVMTSDRYPTDIPDLLTRLTSRFEAGITQDIQKPDLPTRVAILRN 120 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELL 397 + ++ D L+I EVL + + T+ R L+GAF++ + F T E A +L Sbjct: 121 ---LQERND--LDIPNEVLELIGEKIDTNVRSLEGAFHKFEAKIRFMNKPATIETAQSIL 175 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + L N + KK+ +E IQ VA ++ + D+ +RR +V R +A+YL++ Sbjct: 176 AEL-NIDQGKKVTVERIQETVANYFMQTVADMQGSRRQADIVNARHIAIYLTR 227 >gi|86169609|gb|ABC87044.1| chromosomal replication initiation protein [Weissella hellenica] Length = 231 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 10/234 (4%) Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALN--LKDSLRNIDLLLIDDMQFLQGK-LIQ 277 ++R PN V ++T E F+ F A+R K R+ DLL++DD+QFL GK IQ Sbjct: 3 LERTPNANVKFITTEDFINDFTEALRRGQKETEAFKREYRSTDLLMVDDVQFLAGKEKIQ 62 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF + N++ Q+V +D+ P E+ L+ R+ +R G S + D R +IL+ Sbjct: 63 EEFFNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFGQGYSANITKPDLPTRVAILR 122 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADEL 396 N+ + L+I +V+ +A V T+ R+L+G FNQ+V + F+ + +T E A + Sbjct: 123 NKSDLEN-----LSIPNDVIDEIAAAVDTNVRDLEGVFNQVVGKMRFSNVPITVETARTI 177 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 L + N + + I IQ VA +N++ DL +R + +V PRQ+AMY+++ Sbjct: 178 LETM-NFKRQRAITIPLIQEAVANFFNVTVQDLNGKKRNKEIVVPRQIAMYIAR 230 >gi|148927271|ref|ZP_01810841.1| Chromosomal replication initiator, DnaA C-terminal domain [candidate division TM7 genomosp. GTL1] gi|147887330|gb|EDK72784.1| Chromosomal replication initiator, DnaA C-terminal domain [candidate division TM7 genomosp. GTL1] Length = 249 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 17/223 (7%) Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L + KQ++ ++D+PP + +L R+RSR + G+++ + + D+E R +I+ Sbjct: 29 QEEFFHTFNVLHQANKQIIISSDKPPRSIPTLTERLRSRFEWGMAIDIQIPDFETRSAII 88 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV----FRHSFAPILTAE- 391 + + + + E P+ E + ++A + T+ REL+GA NQL+ R I TA Sbjct: 89 ETKASQAGIELPR-----ETVEYMASNIKTNIRELEGALNQLLAFCEMRGVTPDIQTATG 143 Query: 392 -IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 I D V + + I AKH+ I D+LS +R + +V PRQ+AMYL + Sbjct: 144 LIGD------VRQARPHHLTAKQIIDRTAKHFQIEPKDILSPKRDKHIVVPRQIAMYLLR 197 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 SFP+I G +DHTT +H++ K+EK ++ D ++++V Sbjct: 198 SELHLSFPKIAIELGRKDHTTAIHSIDKIEKAIKLDYLIREQV 240 >gi|13357559|ref|NP_077831.1| chromosomal replication initiator protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762315|ref|YP_001752081.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920143|ref|ZP_02690831.2| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508477|ref|ZP_02689676.2| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701846|ref|ZP_02553448.2| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|12230044|sp|Q9PRE2|DNAA_UREPA RecName: Full=Chromosomal replication initiator protein DnaA gi|189083284|sp|B1AHY7|DNAA_UREP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|11356754|pir||B82945 chromosomal replication initiator protein UU001 [imported] - Ureaplasma urealyticum gi|6898947|gb|AAF30408.1|AE002100_1 chromosomal replication initiator protein [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827892|gb|ACA33154.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902510|gb|EDT48799.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182675896|gb|EDT87801.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701140|gb|EDU19422.1| chromosomal replication initiator protein DnaA [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 457 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 87/340 (25%), Positives = 160/340 (47%), Gaps = 24/340 (7%) Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIANA 219 R+ F+ + + N+ A+ A +++ S+ Y + NPLF+ VG+GKTH++ A N Sbjct: 113 RYNFNNLVISNFNQKAIKAIENLF---SNNYDNSSMCNPLFLFGKVGVGKTHIVAAAGNR 169 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLLLIDDMQFLQGKLIQ 277 PNL++ Y + F +F SA + K + + DLL+ +D+Q +Q + Sbjct: 170 FANSNPNLKIYYYEGQDFFRKFCSASLKGTSYVEEFKKEIASADLLIFEDIQNIQSRDST 229 Query: 278 HE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 E F ++ N + + +++ +DR P+EL RI SRL G+ + D I+ Sbjct: 230 AELFFNIFNDIKLNGGKIILTSDRTPNELNGFHNRIISRLASGLQCKISQPDKNEAIKII 289 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---------- 386 N +K I +E ++A T R++ G Q+ F Sbjct: 290 NNWFEFKKK----YQITDEAKEYIAEGFHTDIRQMIGNLKQICFWADNDTNKDLIITKDY 345 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 ++ + +E+ ++V K+ + E I +VAK NI + + S+ R +V R + Sbjct: 346 VIECSVENEIPLNIV---VKKQFKPEQIIEIVAKELNIKTDLIKSSIRKNNIVWARDIVC 402 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 Y+ K + +IG+ R+HTT+ H++ KV+K+L+ + Sbjct: 403 YILKNKLNLTLTDIGKLLNGREHTTISHSISKVQKILDDE 442 >gi|86169617|gb|ABC87048.1| chromosomal replication initiation protein [Weissella kandleri] Length = 220 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/224 (32%), Positives = 129/224 (57%), Gaps = 8/224 (3%) Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSL 287 V ++T + F+ + A+R N K + RN+DLLL+DD+Q L K +Q EF + N++ Sbjct: 1 VKFITTDDFINDWTDALRFNRTNEFKKAYRNVDLLLVDDIQLLADKENVQEEFFNTFNAI 60 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 Q+V +D+ P +++ ++ R+ SR G S L D E + +ILKN+ E+ Sbjct: 61 TRDGHQIVLTSDKLPKDIKGIEDRLVSRFAMGYSANLTQPDPETKIAILKNK-----AEE 115 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGET 406 ++ I+ +VL +A V T+ R+L+G F ++V + + +T + E+L L N + Sbjct: 116 SQIEISYDVLSEIANAVNTNVRDLEGVFKKVVAKIKISNSEVTVDAIREILKDL-NFERS 174 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + I IQ VA+++N++ +DL+ RV+ +V PRQ+AMYL++ Sbjct: 175 TIVTIPGIQESVAEYFNLTVSDLVGKSRVKEIVIPRQIAMYLAR 218 >gi|86169591|gb|ABC87035.1| chromosomal replication initiation protein [Leuconostoc citreum] Length = 225 Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/229 (36%), Positives = 127/229 (55%), Gaps = 16/229 (6%) Query: 229 VVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 + Y TAE F+ F ++R D K R +DLLLIDD+QF GK +Q EF + N Sbjct: 4 IKYATAEDFLNDFTESLRAGDGATAAFKKEYRTVDLLLIDDIQFWSGKEKVQEEFFNTFN 63 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L + KQ++ +D+ P+E+ L R+ SR + G+S+ + D R +ILKN LA Sbjct: 64 VLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQKPDLPTRVAILKN-LA---- 118 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQ----LVFRHSFAPILTAEIADELLSHLV 401 E L I +VL +A + ++ R L+G F++ L FR+ A T E A ++L L Sbjct: 119 ETDGLTIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRFRNKPA---TKETAQQILGDL- 174 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 N + K+ +E IQ++VA +Y + +DL S R + +V R VAMYL++ Sbjct: 175 NINQGFKITVERIQQVVADYYMQTIDDLKSTSRKKDLVTARHVAMYLTR 223 >gi|308189588|ref|YP_003922519.1| chromosomal replication initiator protein [Mycoplasma fermentans JER] gi|307624330|gb|ADN68635.1| chromosomal replication initiator protein [Mycoplasma fermentans JER] Length = 470 Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 118/436 (27%), Positives = 200/436 (45%), Gaps = 46/436 (10%) Query: 92 TITKLFQEEHSRIQ------GVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSP 142 TI + Q H +IQ +EIL++ + L ++E+T + I I K Sbjct: 42 TIVSIDQNNHVKIQTWLQKPSLEILIKMLDGNILKALEETFERECTYEFVHIPKPIVKLT 101 Query: 143 IILGKQTISPV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 +TIS G L+ F ++E N+ A+ A + + Sbjct: 102 KASSNKTISSKTIEEEVKLGVDLNKELTFDNYVESDFNKDAIKLANYLVKGGKE------ 155 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV-YLTAEYFMWRFASAIRDNCALNLK 254 NP+FI+A GLGKTHLL AI N K Q +VV Y+ + + +++N LK Sbjct: 156 YNPIFIYAKSGLGKTHLLHAIGN---KLQEQGKVVKYINPSIYARDISFYLQENDQAKLK 212 Query: 255 ---DSLRNIDLLLIDDMQFL---QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 D N D L+ DD Q K ++L+ L++ K + +D+P + L ++ Sbjct: 213 KIKDEFDNADYLMFDDFQSYGVGNKKATIQTIYNILDYRLNTNKTTIFCSDKPINNLNAM 272 Query: 309 -DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 D R+ SRL G+ + + + +L L I+ +P+ +E V R +TS Sbjct: 273 FDERLISRLYMGLQLEIKIPQQSDLLRVLDYMLDINDM-NPEA-WEKEAKNFVTRNYSTS 330 Query: 368 GRELDGAFNQLVF-RHSFAPI---LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 R L GA +L F + A T + + +L + T E + + I VAK+Y Sbjct: 331 IRTLIGAITRLKFYKMEMARTNSKYTVAVVNSILKDMQQTKEN--ITPDSIIEYVAKYYK 388 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 I + ++L R + VV R +A+Y+ + +IG FG+RDH+T+++A+RK+E Sbjct: 389 IPKKEILGKSRQKDVVLARHIAIYVIRTQLEVPLEQIGHIFGNRDHSTIINAIRKIE--T 446 Query: 484 ETDI---TLKKEVELL 496 E+D+ T+K+ + ++ Sbjct: 447 ESDMPDKTIKRTISMI 462 >gi|238810155|dbj|BAH69945.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 471 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 118/436 (27%), Positives = 200/436 (45%), Gaps = 46/436 (10%) Query: 92 TITKLFQEEHSRIQ------GVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSP 142 TI + Q H +IQ +EIL++ + L ++E+T + I I K Sbjct: 43 TIVGIDQNNHVKIQTWLQKPSLEILIKMLDGNILKALEETFERECTYEFVHIPKPIVKLT 102 Query: 143 IILGKQTISPV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 +TIS G L+ F ++E N+ A+ A + + Sbjct: 103 KASSNKTISSKTIEEEVKLGVDLNKELTFDNYVESDFNKDAIKLANYLVKGGKE------ 156 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV-YLTAEYFMWRFASAIRDNCALNLK 254 NP+FI+A GLGKTHLL AI N K Q +VV Y+ + + +++N LK Sbjct: 157 YNPIFIYAKSGLGKTHLLHAIGN---KLQEQGKVVKYINPSIYARDISFYLQENDQAKLK 213 Query: 255 ---DSLRNIDLLLIDDMQFL---QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 D N D L+ DD Q K ++L+ L++ K + +D+P + L ++ Sbjct: 214 KIKDEFDNADYLIFDDFQSYGVGNKKATIQTIYNILDYRLNTNKTTIFCSDKPINNLNAM 273 Query: 309 -DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 D R+ SRL G+ + + + +L L I+ +P+ +E V R +TS Sbjct: 274 FDERLISRLYMGLQLEIKIPQQSDLLRVLDYMLDINDM-NPEA-WEKEAKNFVTRNYSTS 331 Query: 368 GRELDGAFNQLVF-RHSFAPI---LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 R L GA +L F + A T + + +L + T E + + I VAK+Y Sbjct: 332 IRTLIGAITRLKFYKMEMARTNSKYTVAVVNSILKDMQQTKEN--ITPDSIIEYVAKYYK 389 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 I + ++L R + VV R +A+Y+ + +IG FG+RDH+T+++A+RK+E Sbjct: 390 IPKKEILGKSRQKDVVLARHIAIYVIRTQLEVPLEQIGHIFGNRDHSTIINAIRKIE--T 447 Query: 484 ETDI---TLKKEVELL 496 E+D+ T+K+ + ++ Sbjct: 448 ESDMPDKTIKRTISMI 463 >gi|319776739|ref|YP_004136390.1| chromosomal replication initiator protein dnaa [Mycoplasma fermentans M64] gi|318037814|gb|ADV34013.1| Chromosomal replication initiator protein DnaA [Mycoplasma fermentans M64] Length = 470 Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 118/436 (27%), Positives = 200/436 (45%), Gaps = 46/436 (10%) Query: 92 TITKLFQEEHSRIQ------GVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSP 142 TI + Q H +IQ +EIL++ + L ++E+T + I I K Sbjct: 42 TIVGIDQNNHVKIQTWLQKPSLEILIKMLDGNILKALEETFERECTYEFVHIPKPIVKLT 101 Query: 143 IILGKQTISPV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 +TIS G L+ F ++E N+ A+ A + + Sbjct: 102 KASSNKTISSKTIEEEVKLGVDLNKELTFDNYVESDFNKDAIKLANYLVKGGKE------ 155 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV-YLTAEYFMWRFASAIRDNCALNLK 254 NP+FI+A GLGKTHLL AI N K Q +VV Y+ + + +++N LK Sbjct: 156 YNPIFIYAKSGLGKTHLLHAIGN---KLQEQGKVVKYINPSIYARDISFYLQENDQAKLK 212 Query: 255 ---DSLRNIDLLLIDDMQFL---QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 D N D L+ DD Q K ++L+ L++ K + +D+P + L ++ Sbjct: 213 KIKDEFDNADYLIFDDFQSYGVGNKKATIQTIYNILDYRLNTNKTTIFCSDKPINNLNAM 272 Query: 309 -DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 D R+ SRL G+ + + + +L L I+ +P+ +E V R +TS Sbjct: 273 FDERLISRLYMGLQLEIKIPQQSDLLRVLDYMLDINDM-NPEA-WEKEAKNFVTRNYSTS 330 Query: 368 GRELDGAFNQLVF-RHSFAPI---LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 R L GA +L F + A T + + +L + T E + + I VAK+Y Sbjct: 331 IRTLIGAITRLKFYKMEMARTNSKYTVAVVNSILKDMQQTKEN--ITPDSIIEYVAKYYK 388 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 I + ++L R + VV R +A+Y+ + +IG FG+RDH+T+++A+RK+E Sbjct: 389 IPKKEILGKSRQKDVVLARHIAIYVIRTQLEVPLEQIGHIFGNRDHSTIINAIRKIE--T 446 Query: 484 ETDI---TLKKEVELL 496 E+D+ T+K+ + ++ Sbjct: 447 ESDMPDKTIKRTISMI 462 >gi|297200939|ref|ZP_06918336.1| chromosomal replication initiator protein DnaA [Streptomyces sviceus ATCC 29083] gi|297147773|gb|EDY60923.2| chromosomal replication initiator protein DnaA [Streptomyces sviceus ATCC 29083] Length = 505 Score = 120 bits (301), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 75/205 (36%), Positives = 119/205 (58%), Gaps = 12/205 (5%) Query: 120 EKTASSPSITKLSPINTNI--SKSPIILGKQTISPVF-GSP---LDSRFVFSTFIEGSSN 173 + + S + + P+ +N+ + +P L Q G P L+ +++F TF+ G+SN Sbjct: 304 DPPSGSGRVHRGGPVGSNLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASN 363 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A AA ++AE + Y NPLFI+ GLGKTHLL AI + + P RV Y++ Sbjct: 364 RFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVS 418 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ K Sbjct: 419 SEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANK 478 Query: 293 QVVAAADRPPSELESLDPRIRSRLQ 317 Q+V ++DRPP +L +L+ R+R+R + Sbjct: 479 QIVLSSDRPPKQLVTLEDRLRNRFE 503 >gi|207108901|ref|ZP_03243063.1| chromosomal replication initiation protein [Helicobacter pylori HPKX_438_CA4C1] Length = 254 Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 73/259 (28%), Positives = 141/259 (54%), Gaps = 10/259 (3%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 + + GLGKTH+L AI N ++++ +VV +T+E F+ F + + + K R Sbjct: 1 MLFYGGTGLGKTHILNAIGNHALEKHK--KVVLVTSEDFLTDFLKHLDNKTMDSFKAKYR 58 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 + D L+DD QFLQGK ++ EF H N L ++KQ+V +DR P + L+ R++SR + Sbjct: 59 HCDFFLLDDAQFLQGKPKLEEEFFHTFNELHANSKQIVLISDRSPKNIAGLEDRLKSRFE 118 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G++ + D E + SI+K + ++Q P EEV+ ++A+ ++ + R+++GA + Sbjct: 119 WGITAKVMPPDLETKLSIVKQKCQLNQIILP-----EEVMEYIAQHISDNIRQMEGAIIK 173 Query: 378 L-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 + V + + +A +L L + +E+I VA+ N+ +++ + R + Sbjct: 174 ISVNANLMNATIDLNLAKTVLEDL-QKDHAEGSSLENILLAVAQSLNLKSSEIKVSSRQK 232 Query: 437 TVVRPRQVAMYLSKIMTPR 455 V R++ +Y +++ TP+ Sbjct: 233 NVALARKLVVYFARLYTPK 251 >gi|86169597|gb|ABC87038.1| chromosomal replication initiation protein [Leuconostoc pseudomesenteroides KCTC 3652] Length = 233 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 125/232 (53%), Gaps = 14/232 (6%) Query: 225 PNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 P + Y TAE F+ F ++R D K R++DLLL+DD+QF GK +Q EF Sbjct: 8 PLAHIKYATAEDFLNDFTESLRAGDGATAAFKQEYRSVDLLLVDDIQFWSGKEKVQEEFF 67 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 + N L + KQ+ +D+ P+E+ L R+ SR + G+ + + D R +IL+N Sbjct: 68 NTFNVLTKNGKQIFMTSDKYPTEIVDLQTRLTSRFEAGIMMDIQKPDLPTRVAILQNL-- 125 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---LTAEIADELLS 398 E L I +VL +A + ++ R L+GAF++ F S + T E A ++L Sbjct: 126 ---SESDGLTIPNDVLELIAEKIDSNVRSLEGAFHK--FEASLGYMNKPATKETAQQILG 180 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 L N + K+ +E IQ++VA +Y + +DL S+ R + +V R VAMYL++ Sbjct: 181 DL-NINQGFKITVERIQQVVADYYKQTIDDLKSSSRKKDLVTARHVAMYLTR 231 >gi|149174465|ref|ZP_01853091.1| chromosomal replication initiation protein [Planctomyces maris DSM 8797] gi|148846575|gb|EDL60912.1| chromosomal replication initiation protein [Planctomyces maris DSM 8797] Length = 342 Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/302 (25%), Positives = 144/302 (47%), Gaps = 10/302 (3%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 ++I+ G GK+ L+ ++ + P +TA F ++A A ++ ++ R Sbjct: 42 VYIYGPSGCGKSALINSLLPDYVNLHPEAEWNSMTASEFAAKYAVASKNKRIAAFQEKHR 101 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 + LL+++D+ L+ + Q E L+++L V+ + +PP EL ++ +R Sbjct: 102 GMKLLVLEDIHSLENRTHTQGELLSTLDTILKQGGAVIVTSIKPPGELAHFQKKLINRFH 161 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 GGV V + Y+ R +LK Q + I E+ L +AR S REL NQ Sbjct: 162 GGVCVGIAPLKYQSRLELLKFWADFEQ-----IPIKEKELALIARQKECSPRELSAILNQ 216 Query: 378 LVFRHSFAPILTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L H+ + I I + ++ + + I R+V + + S + S R + Sbjct: 217 L---HTVSRIQQKRIEGRFVQEFLDGNLDPPRTSTAKITRVVCREFKTSLAQVRSANRSQ 273 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V PRQ AM+LS+ +T S I F ++H+TV+HA R+++ LE L++++ + Sbjct: 274 QIVLPRQCAMFLSRELTGESLANIANYFNRKNHSTVIHACRQIQNDLEKSPGLRQQISRI 333 Query: 497 KR 498 K+ Sbjct: 334 KQ 335 >gi|86169593|gb|ABC87036.1| chromosomal replication initiation protein [Leuconostoc citreum] Length = 219 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 16/225 (7%) Query: 233 TAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 TAE F+ F ++R + K R +DLLLIDD+QF GK +Q EF + N L Sbjct: 2 TAEDFLNDFTESLRAGEGATAAFKKEYRTVDLLLIDDIQFWSGKEKVQEEFFNTFNVLTK 61 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + KQ++ +D+ P+E+ L R+ SR + G+S+ + D R +ILKN LA E Sbjct: 62 TGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQKPDLPTRVAILKN-LA----ETDG 116 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQ----LVFRHSFAPILTAEIADELLSHLVNTGE 405 L I +VL +A + ++ R L+G F++ L FR+ A T E A ++L L N + Sbjct: 117 LTIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRFRNKPA---TKETAQQILGDL-NINQ 172 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 K+ +E IQ++VA +Y ++ +DL S R + +V R VAMYL++ Sbjct: 173 GFKITVERIQQVVADYYMLTIDDLKSTSRKKDLVTARHVAMYLTR 217 >gi|330723618|gb|AEC45988.1| chromosomal replication initiation protein [Mycoplasma hyorhinis MCLD] Length = 474 Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 101/454 (22%), Positives = 213/454 (46%), Gaps = 37/454 (8%) Query: 54 VYASWFQRLK--FHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV 111 ++ S+F+++K F S + I L V NF K I+++++ + + E + G++ ++ Sbjct: 35 IFNSFFRKIKVLFESSVEII--LKVENNFTKKEIEDKWMHLLERAVFE----VTGIKKII 88 Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 V + + K+S I + S S + + F + L +++ F F+ + Sbjct: 89 SLTTSDEVNFQKQNET-EKVSKIEDHSSNSTQKASEHKENVKFNNTLTNKYNFGNFVLAN 147 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 N+ + A ++I E + T+ +PLF++ S G+GKTH L AI N IKR+ + ++ Sbjct: 148 FNKNIIKAYENIIEAE-----TIIYSPLFLYGSSGIGKTHFLHAIGNEFIKRKKTVYYIH 202 Query: 232 LTAEYFMWRFASAI------RDNCALN-LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHL 283 +A F + I ++N +N +++ D+LL D++Q L K + Sbjct: 203 SSA------FTTLITNWMIKKENIDINHFVETVCYADVLLFDEIQLLANKTSTMSVLLQI 256 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 +N+ +++ KQ++ +D+ P L + R +R G+ + E +LK +L Sbjct: 257 VNNFIENDKQIIITSDKSPEVLGGFEERFITRFNSGLILEFSKPTKEDFLKVLKYKLEFQ 316 Query: 344 QKEDPKLNINE-EVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPILTAEIADELLSHL 400 K + + L++ ++V RE++G N++ F I + E+ + + + Sbjct: 317 NINPEKFEKDALDFLVYNKKSV----REIEGVVNRIKFFSEGEAIQIYSLELIERIFKGI 372 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 V E + I VA ++ I++ +++ R +V R ++++ K + + I Sbjct: 373 VKNKEN--LTHNKIIEEVANYFQINKEEIIGTSRKTEIVMARDISIWFVKNLLDLTLKSI 430 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 G+ FG +DH+T++ + K+ E + +K +E Sbjct: 431 GQIFGGKDHSTIISVINKINVRKEKEPAIKYAIE 464 >gi|212703551|ref|ZP_03311679.1| hypothetical protein DESPIG_01596 [Desulfovibrio piger ATCC 29098] gi|212673051|gb|EEB33534.1| hypothetical protein DESPIG_01596 [Desulfovibrio piger ATCC 29098] Length = 510 Score = 117 bits (292), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 130/497 (26%), Positives = 219/497 (44%), Gaps = 64/497 (12%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI----TKLF 97 +S L+ + P ++ W L H + N + L+ P+ ++ W+++R +T+ + Sbjct: 11 ISENLRGVLNPGIFKVWIHPLDAH-IEGNSLCLAAPSEYVARWLRDRMQDTLRSAAAPVL 69 Query: 98 QEEHSRI------QGVEIL----------------------VRSVALPSVEKTASSPSIT 129 Q I QG + V V + S PS Sbjct: 70 QVAPENIDIRISCQGAAVAPAAPVAPAAAAAAPLAAPVAQPVHEVPAAPLHAAPSRPSQP 129 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 P S+ + L T+ P + RF F F+ G N +A+ AA+ I D Sbjct: 130 LWQP-----SQCSLPLPAPTLRPR--TRQRWRFSFDDFVVGPCNAMAVAAAKDICH-DGG 181 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 T LF+ ++ GLGKTH++Q++ A ++ R+ YL+AE R+ +A+R N Sbjct: 182 CVET-----LFVSSASGLGKTHIMQSVGRAVQEQGGQARLAYLSAEGLASRYVAALRSND 236 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + + LR++D+LL++D+ FLQGK +Q ++ SL D + + + P ELE L Sbjct: 237 VESFRARLRDLDVLLLEDVHFLQGKEKMQDMVLTVIKSLQDRGGRAIFTSSFSPRELEKL 296 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 D ++ S G+ PL D EM IL+ + Q P +EV +A + Sbjct: 297 DSQLVSHFCSGIVSPLERPDTEMCRHILERKAKSFQVLLP-----DEVCDLLAGRLQGDV 351 Query: 369 RELDGAFNQLVFRHSFAPI-LTAEIADELLSHL--VNTGETKKMRIEDIQRMVAKHYNIS 425 R+L+ LVF+ L E+A E+L V+ G I R+V + Y ++ Sbjct: 352 RQLESCLKSLVFKARMLNCGLNPELALEVLQQYATVDCGPD----FASIVRLVCESYGLN 407 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 L S + V R YL++ T S EIG RF +R H+TV+ + +E+ + Sbjct: 408 ERQLASRSHKQQYVLARNTIYYLARKHTDMSLKEIGERF-NRRHSTVIKGITSLEREIAN 466 Query: 486 DITLKKE----VELLKR 498 + + ++ VEL++R Sbjct: 467 ESRVGRQISRAVELIER 483 >gi|86169599|gb|ABC87039.1| chromosomal replication initiation protein [Leuconostoc fallax KCTC 3537] Length = 219 Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 77/225 (34%), Positives = 121/225 (53%), Gaps = 12/225 (5%) Query: 231 YLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 Y T E F F ++R + K R +DLLLIDD+QFL GK IQ EF + N+L Sbjct: 1 YATTEDFTNDFTDSLRAGEGATATFKRDYRTVDLLLIDDIQFLSGKDKIQEEFFNTFNAL 60 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + +Q+V +D+ P + L R+ +R + G+S+ + D R +IL+N+ E Sbjct: 61 TKTGRQIVMTSDQLPKNIPDLQQRLTTRFEAGISMDILQPDLPTRVAILQNK-----AET 115 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTAEIADELLSHLVNTGE 405 LNI +VL +A V + R L+GAF++ R P T E A ++L L N + Sbjct: 116 DGLNIPRDVLELIAEKVDNNVRSLEGAFHKFEATLRFMNKPA-TKETAQQILGDL-NINQ 173 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +E IQ++VA +Y + +DL S+ R + +V R +AMYL++ Sbjct: 174 GFDITVERIQQIVADYYMQTIDDLKSSSRKKDLVNARHIAMYLTR 218 >gi|303326103|ref|ZP_07356546.1| putative ATPase involved in DNA replication initiation [Desulfovibrio sp. 3_1_syn3] gi|302864019|gb|EFL86950.1| putative ATPase involved in DNA replication initiation [Desulfovibrio sp. 3_1_syn3] Length = 457 Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 131/490 (26%), Positives = 213/490 (43%), Gaps = 87/490 (17%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI----KNRYLETITKLFQEEHSR 103 NQ G +WF+ L + + + P + AW +N + E +++ F ++ Sbjct: 11 NQDGTQEAEAWFECLTLRQE-DDTLRVVFPHTYFAAWFSRHKRNVFEEALSRHFTDK--- 66 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS------- 156 +LP V + + P I Q S GS Sbjct: 67 -----------SLPRV--------------VYEHCGPFPQISAPQASSGREGSEGEPQAG 101 Query: 157 PLDSRFV---FSTFIEGSSNRVALTAAQSIAEVD-SHGYTTVRLNPLFIHASVGLGKTHL 212 P D+R F++FI + N L AA+ IAE D Y NP + G GKTHL Sbjct: 102 PDDARNAEDNFASFISNAKNAFPLAAAKEIAESDVGEAY-----NPFLLCGRSGTGKTHL 156 Query: 213 LQAIANASIKRQ----PNLRVVYLTAEYFM-----WRFASAIRDNCALNLKDSLRNIDLL 263 L+A+A + +R + R++ A F W A R D+L DL Sbjct: 157 LRALAGSFARRGSGKTASRRIICQNAARFCAEDTPW----ARRPELFWQQCDALLLDDLQ 212 Query: 264 LIDDMQFLQGKLIQ-HEFC--------------HLLNSLLDSAKQVVAAADRPPSELESL 308 + Q KLI + C + L D +Q+V A P L+ L Sbjct: 213 DLAGQAAWQQKLIACMDACPPAPRQNADVPTPVGMEYGLSDGPRQMVFAHAGPAQALKDL 272 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 D R+RSRL+ G+ V L D ++R L+ A+ ++ +LN+ + L+++A+ Sbjct: 273 DERLRSRLESGLVVELLEPDLDVRLRYLQ---ALCKER--RLNLGRDQLLYLAQRCAQF- 326 Query: 369 RELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKM-RIEDIQRMVAKHYNISRN 427 R L G ++ +FA + + L ++V TG + +I VA+ N+ Sbjct: 327 RLLQGLLLKVA---AFAAVHGRNLTPADLENIVRTGGADRPPGCREILGEVARGLNLRPE 383 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+L +R +V RQVAMYL + S+PE+GR FG +DH+TV+HA++K++K+L +D Sbjct: 384 DILGGKRRPDLVLARQVAMYLCRQKLGLSYPELGRAFGGKDHSTVIHAIKKIKKLLVSDK 443 Query: 488 TLKKEVELLK 497 +++ V L+ Sbjct: 444 DVQRLVTQLE 453 >gi|94987229|ref|YP_595162.1| DNA replication initiation ATPase [Lawsonia intracellularis PHE/MN1-00] gi|94731478|emb|CAJ54841.1| ATPase involved in DNA replication initiation [Lawsonia intracellularis PHE/MN1-00] Length = 440 Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 117/444 (26%), Positives = 203/444 (45%), Gaps = 43/444 (9%) Query: 47 KNQVGPDVYASWFQRLKF-HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 KN + SWF L HS ++++ P F +W N T K+F+E + Sbjct: 14 KNFCSNEELQSWFDPLTIKHSENPPSIYVTFPHRFFGSWFAN----TFQKIFEETSYELW 69 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 G V E T P PI N S P + + + + Sbjct: 70 GY-----GVNFYYDEVTTKEPL---YYPIKQNKSTQPTNISQHFDNFIINGK-------H 114 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 ++I + + +++I + S T + L + GKTHLL+AIAN + + P Sbjct: 115 SWIISIIENILCSVSENILKNTSEEITQL----LVLFGKQTTGKTHLLRAIAN-ELSKIP 169 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 + Y T + A ++ ++ +++ ++LIDD Q + +Q E LL Sbjct: 170 SCSFKYTTTD----ELAFSLNKEPLFLFREHIQSHHIILIDDFQRVSSYPELQLELTILL 225 Query: 285 NSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 + D+ K +++ D P + ++ I SRL+ G+ L D ++RF R A Sbjct: 226 DYYKDNKKILIISGTDHPLTW--NVSKEIYSRLEVGLWGELPEPDLDIRF-----RYAQQ 278 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD-ELLSHLVN 402 ++ K + +E L+ +++ S R L G ++ + + +L E+++ EL++ + Sbjct: 279 LSKEKKYILPKEQLLIISQHCH-SLRCLSGILHRTI---AHKTLLNRELSEKELITLIKQ 334 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 TGE + + I +V + Y S ND++S R + +V RQVAMYL + + S+P IGR Sbjct: 335 TGEITSISPQLIIMLVGECYGFSANDIISESRQQQLVLARQVAMYLCRELLGYSYPAIGR 394 Query: 463 RFGDRDHTTVLHAVRKVEKMLETD 486 FG RDHTTVLH+V+K+ + + D Sbjct: 395 LFGGRDHTTVLHSVKKIALLQDND 418 >gi|4378841|gb|AAD19709.1| DnaA [Zymomonas mobilis subsp. mobilis ZM4] Length = 285 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 77/284 (27%), Positives = 131/284 (46%), Gaps = 51/284 (17%) Query: 46 LKNQVGPDVYASWFQRL---KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 L+ + G + SW + L F S I+ L+ P+ F+ WI + + + Sbjct: 23 LRKKCGSRTFESWLKSLMLADFDSQ-KKIIRLACPSEFMANWISSHLSDEL--------- 72 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT------------- 149 +L P + + S + P+ ++++ + LG Q Sbjct: 73 ------LLAWRTVWPGIAEVKVSVRNPESQPLLLDVTEIELPLGDQPRPLPKKPAKKKQS 126 Query: 150 --ISPVFGSP-----------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 +P SP + R+ F F+ G +N +A AA + AE + Sbjct: 127 VPATPKSTSPEKKAEGEDQNQFEERYNFDNFVVGKANDLAYRAACTFAEGGK-----LDF 181 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLF++ GLGKTHL+ A+ +KR PN +Y++AE FM+ F +++R + K Sbjct: 182 NPLFLYGGTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKAR 241 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 LR+ DLL+IDD+QF+ GK Q EF H +N ++ + +++V +AD Sbjct: 242 LRSADLLMIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISAD 285 >gi|240047136|ref|YP_002960524.1| chromosomal replication initiation protein [Mycoplasma conjunctivae HRC/581] gi|239984708|emb|CAT04680.1| Chromosomal replication initiator protein dnaA [Mycoplasma conjunctivae] Length = 470 Score = 114 bits (285), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 159/344 (46%), Gaps = 43/344 (12%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 +++ F++G+ N++ +I E + +PLFI+ + G+GKTH L A+ N+ Sbjct: 123 AKYTIENFVQGNYNKMVFGVYHNIIEKNKF------FSPLFIYGASGVGKTHFLSALGNS 176 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN----LKDSLRNIDLLLIDDMQFLQGK- 274 IK+ +V Y+ F S +RD + + L ID+L+IDD+Q K Sbjct: 177 FIKKDK--KVFYINDYKFTSIVTSWLRDKNEYSKINQFIEWLSTIDVLIIDDIQGFGNKT 234 Query: 275 -----LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L Q ++N ++ KQ+V A+D PP+ L + R+ +R + G+ + + Sbjct: 235 RTLSILFQ-----IINKFIEEDKQIVIASDTPPNILGGFEDRLITRFKSGLVIEMNKPTK 289 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR-------- 381 E I K I ++ K + E + ++R S R+++GA +++F Sbjct: 290 EDFVKIFK--FKIEEEGLDKYYWSPEAIDFLSRHFHNSIRDMEGALKKIIFYIQTDESFY 347 Query: 382 ----HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 SF+ EI +E ++K E I + + + RVR Sbjct: 348 ENPDFSFSLEKILEIFEEQKKF------SQKTTYEVIIKETCDFLGVDSKLVFGKSRVRE 401 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 +V+ R +++++ K + + IG+ FGDRDH+T++ ++ V++ Sbjct: 402 IVKARNISIWIIKNLLDYTHVNIGKIFGDRDHSTIVSILKNVDR 445 >gi|94502201|ref|ZP_01308696.1| chromosomal replication initiator protein DnaA [Oceanobacter sp. RED65] gi|94425662|gb|EAT10675.1| chromosomal replication initiator protein DnaA [Oceanobacter sp. RED65] Length = 181 Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 110/185 (59%), Gaps = 8/185 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G +V + + E R +IL + + E +++ E VA+ + ++ REL+GA ++ Sbjct: 3 GFTVAVEPPELETRVAIL-----MKKAEQEGIDLPHEAAFFVAQKIRSNVRELEGALKRV 57 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + +F +T E L L+ + K++ I++IQR+VA++Y I +DLLS RR R+ Sbjct: 58 IANSAFTGSKITLPFIKESLKDLLAL-QDKQVSIDNIQRIVAEYYKIKVSDLLSKRRSRS 116 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE-LL 496 V RPRQVAM LSK +T S PEIG FG RDHTTVLH RK++++ E + ++ + LL Sbjct: 117 VARPRQVAMALSKELTNHSLPEIGDAFGGRDHTTVLHGCRKIKELRENSADIGEDYKNLL 176 Query: 497 KRLIS 501 + L S Sbjct: 177 RSLTS 181 >gi|304372806|ref|YP_003856015.1| Chromosomal replication initiator protein dnaA [Mycoplasma hyorhinis HUB-1] gi|304308997|gb|ADM21477.1| Chromosomal replication initiator protein dnaA [Mycoplasma hyorhinis HUB-1] Length = 404 Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 80/354 (22%), Positives = 169/354 (47%), Gaps = 16/354 (4%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F + L +++ F F+ + N+ + A ++I E + T+ +PLF++ S G+GKTH L Sbjct: 60 FNNILTNKYNFGNFVLANFNKNIIKAYENIIEAE-----TIIYSPLFLYGSSGIGKTHFL 114 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSLRNIDLLLIDDMQFLQ 272 AI N IKR+ + ++ +A + ++N +N +++ D+LL D++Q L Sbjct: 115 HAIGNEFIKRKKTVYYIHSSAFTTLITNWMIKKENIDINHFVETVCYADVLLFDEIQLLA 174 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K ++N+ +++ KQ++ +D+ P L + R +R G+ + E Sbjct: 175 NKTSTMSVLLQIVNNFIENDKQIIITSDKSPEVLGGFEERFITRFNSGLILEFSKPTKED 234 Query: 332 RFSILKNRLAISQKEDPKLNINE-EVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPIL 388 +LK +L K + + L++ ++V RE++G N++ F I Sbjct: 235 FLKVLKYKLEFQNINPEKFEKDALDFLVYNKKSV----REIEGVVNRIKFFSEGEAIQIY 290 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E+ + + +V E + I VA ++ I++ +++ R +V R ++++ Sbjct: 291 SLELIERIFKGIVKNKEN--LTHNKIIEEVANYFQINKEEIIGTSRKTEIVMARDISIWF 348 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K + + IG+ FG +DH+T++ + K+ E + +K +E + I + Sbjct: 349 VKNLLDLTLKSIGQIFGGKDHSTIISVINKINVRKEKEPAIKYAIEKINEKIGK 402 >gi|58696886|ref|ZP_00372398.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] gi|58536901|gb|EAL60087.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] Length = 220 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/207 (37%), Positives = 110/207 (53%), Gaps = 35/207 (16%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L N G Y SW LKF S + V LSV T F+K WI Y++ I L+Q E I+ Sbjct: 36 LYNLYGEATYNSWLSSLKFVSSRNGEVLLSVSTRFIKEWITVHYMKKILSLWQSEDKSIR 95 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 ++I V +E+ S N N+ I+ ++ + GSPLD RF F Sbjct: 96 SIDIQV-------IEERNS----------NFNV----ILKNREESNHNLGSPLDPRFTFD 134 Query: 166 TFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA-----NA 219 F+ G N +A TAA+ +AE +D + NPLF++ VGLGKTHL+ AIA + Sbjct: 135 NFVVGKPNELAFTAAKRVAESIDP----ILGSNPLFLYGGVGLGKTHLMHAIAWHIVNSP 190 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIR 246 S KR +VVYL+AE FM+++ +A+R Sbjct: 191 SAKR----KVVYLSAEKFMYQYITALR 213 >gi|416271|dbj|BAA03630.1| DnaA protein [Spiroplasma citri] Length = 265 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 88/270 (32%), Positives = 135/270 (50%), Gaps = 18/270 (6%) Query: 206 GLGKTHLLQAIANASIK-RQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNID 261 GLGKTHLL AI N + + N RV YL A+ F + A I + K S D Sbjct: 3 GLGKTHLLHAIENKVNEIYKTNNRVKYLKADEF-GKIAMDILNQGHEIIEAFKTSYDIYD 61 Query: 262 LLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+Q L + +E F H+ NS ++ KQ+V +D+ P +L + RI SR G+ Sbjct: 62 CLLIDDIQLLAKRNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGL 121 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNI-NEEVLMHVARTVTTSGRELDGAFNQLV 379 S+ L D+E IL+ +L K L + +EE L +A + R+L+GA +L+ Sbjct: 122 SIGLDSPDFETALKILEQKL----KHQNNLGLFSEESLEFIALNFNSDVRKLEGAIKRLL 177 Query: 380 F-----RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 F + I A++ + + E K+ + I+++VA YNI+ ++S R Sbjct: 178 FLAVMNKKPNEIITLADVEKAFKNAPLQNNE--KITPKKIKQIVADSYNITIKAMMSKSR 235 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 V V++ RQ+AMY + + F IG F Sbjct: 236 VSNVMQARQLAMYFCRTLLDEPFTRIGTEF 265 >gi|46578418|ref|YP_009226.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. Hildenborough] gi|46447829|gb|AAS94485.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. Hildenborough] gi|311232350|gb|ADP85204.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio vulgaris RCH1] Length = 437 Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 114/431 (26%), Positives = 195/431 (45%), Gaps = 51/431 (11%) Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGV-EILVRSVALPSVEKTASSPSITKLSPIN 135 P W + + LE T GV +++ SVAL E ++ T P Sbjct: 42 PHPHFARWFEAQALERFTA----------GVRDVVGTSVALVFPEGIKTTDRSTVQPP-- 89 Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 S+ P L ++++ FG+ F F FI N+ L AA+ A + H T Sbjct: 90 ---SQPP--LASESVACPFGAA----FTFDAFITNRKNQFPLAAAREAAR-NGHQRT--- 136 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS----AIRDN-CA 250 NP + + G GKTHLL+A+AN V +AE R+ + A+R CA Sbjct: 137 YNPFVLCGASGNGKTHLLRALANELAALYGTDAVFCGSAEELHDRYNTEERLAMRRTLCA 196 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 L + D++ E L + D KQ+ A S+L+ L+ Sbjct: 197 HRALLLDDLHRLRALPDLR--------EELTALFDHFYDHGKQMAFAYAGRLSDLDFLEA 248 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 +RSRL+ G+ V L D ++R + R A L + E ++ +A+ R Sbjct: 249 PLRSRLELGLIVDLKEPDLDVRVRYIHARCAAL-----SLQLAREHVLTLAQRCHEF-RH 302 Query: 371 LDGAFNQLVFRHSFAPILTAEIADELLSHLV---NTGETKKMRIEDIQRMVAKHYNISRN 427 L G ++ ++ ++ +I D L ++ ++G + + + I A+H+ ++ Sbjct: 303 LSGLLLKVA---AYRDMVGRDILDRELEQILRNTDSGPERAVAPDTIISAAAEHFGVTPR 359 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+LS++R + +V+ RQVAM+L + + SFP +GR FG +DH+T ++AV+K++K+ + Sbjct: 360 DILSDKRQQHIVQARQVAMFLCRELIGSSFPALGRMFGGKDHSTAMYAVKKIKKLQYDNK 419 Query: 488 TLKKEVELLKR 498 + V LKR Sbjct: 420 DMHALVAELKR 430 >gi|317486108|ref|ZP_07944955.1| bacterial dnaA helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922631|gb|EFV43870.1| bacterial dnaA helix-turn-helix domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 516 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 116/466 (24%), Positives = 201/466 (43%), Gaps = 64/466 (13%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 SWF L+ +L + ++ F A+ R+ KLF+++ + G + + A Sbjct: 60 SWFDPLE---ILLDQEAGTLAVRFPHAFFGIRFSSLFQKLFEKKARELWGKGLSITYGA- 115 Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 K SP + + P + + L +P+ P + F TFI ++ A Sbjct: 116 ---GKFTPSPPVPFVQPAPESRQDA---LHPAVANPM---PFGEEWTFDTFIGNGKHKWA 166 Query: 177 LTAAQSIAEVDSHGYTTVRL----------NPLFIHASVGLGKTHLLQAIANASIKRQPN 226 L+ A+ I + T R L + G GKTHLL+AI N + R Sbjct: 167 LSLARDITRRAVYRATHGRAPSLDDIGEAPGLLVLCGPHGTGKTHLLRAIGN-ELFRTLG 225 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ-------------- 272 + Y + FA L + L + + +LIDD Q L Sbjct: 226 SDLYYASLSDLELLFAG----RSVLAARQELLSKEAVLIDDFQHLSRIPDKTPTTASRFR 281 Query: 273 -----------GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 G ++ E C LL+ +D K V+ A P E SL + SRL+ G+ Sbjct: 282 AQIVAEPEQPAGPSVREELCLLLDRFMDQGKPVIVAGVGRPKEW-SLGKALLSRLETGLW 340 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 L D ++R R A Q + +L ++ E L+ +A+ R L G ++ Sbjct: 341 AELPEPDLDVRL-----RYAQQQAKFRRLPLSREQLLLIAQHCPDV-RRLSGVILRVASH 394 Query: 382 HSFAPILTAEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S +L +++++ L ++V G++ + + I +V +H + ++L +R +V+ Sbjct: 395 RS---LLGRDLSEQDLLNIVRQGGDSSALTPQLIVSIVGEHCGVPAKEILGEKRRPDLVQ 451 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 RQ+AMYL + + S+P IGR FG +DH+TV+H V+K++ + E+D Sbjct: 452 ARQLAMYLCRELLGHSYPVIGRMFGGKDHSTVMHGVKKIKLLQESD 497 >gi|261417132|ref|YP_003250815.1| Chromosomal replication initiator DnaA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373588|gb|ACX76333.1| Chromosomal replication initiator DnaA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 487 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 122/497 (24%), Positives = 211/497 (42%), Gaps = 55/497 (11%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ES + V R++++ A L + + + L+VP + W+ + Y + + K Sbjct: 12 ESPWQQVLDRVRSECKDFFGAVILDALGYEGMCNGYALLTVPDELRENWVNSHYGDLLRK 71 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI--NTNISKSPIILGKQTISPV 153 F + V+ +R +A PS P I P+ K+ + KQ ++ Sbjct: 72 SFTAVFGS-EFVDYRIRQIA-PS----DPIPEIKLTMPVIPRPEKKKAEVKRPKQPLA-- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L +R+ F F+EG N A A Q++AE LNPLF++ GLGKTHLL Sbjct: 124 ----LYARYTFENFVEGECNSTAFRACQAVAENPGDP----ALNPLFVYGESGLGKTHLL 175 Query: 214 QAIANASIKRQPNLRVVYLTAEYFM---WRFASAIRDNCA--LNLKDSLRNIDLLLIDDM 268 Q+IA K +P +VY A F+ ASA+ + L + R L + Sbjct: 176 QSIAAKIQKSRPEASIVYCHAYDFLRDATAMASALHNKTGNVRELAEKFRERYELCDVLL 235 Query: 269 QFL-----QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD-------------- 309 +G Q L+ L KQVV + DR P+ +D Sbjct: 236 LDDVQLLEKGLWTQDRLAILIKHLRAEGKQVVISCDRHPNLFRVVDTDNESRGSSRSSIP 295 Query: 310 ---PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 ++ + L V+V + D R +++ + S+ EE+ +++ Sbjct: 296 SISKKLLAPLASCVAVGIDEPDLATRMNLISKK---SEDLPFAKGDREEICRYLSMQPRK 352 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETK---KMRIEDIQRMVAKHYN 423 + R ++G N L + F A++ + LV E ++ ++I VA Y Sbjct: 353 NVRLIEGLLNFLGAMNMFC---KADLNLNGVKRLVAPSEHGGHVELTAKNIIEAVAMDYR 409 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + +L S R+ + PR+VAM+L + +T S IG F RD+ TV+ A+ ++K + Sbjct: 410 VEVCELSSKRQAAAISMPRKVAMFLCRELTTDSLQNIGAMFC-RDYATVIAAINSLKKQM 468 Query: 484 ETDITLKKEVELLKRLI 500 ETD +L + V+ ++ ++ Sbjct: 469 ETDASLARRVQDIRYML 485 >gi|302327394|gb|ADL26595.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 481 Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 122/497 (24%), Positives = 211/497 (42%), Gaps = 55/497 (11%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ES + V R++++ A L + + + L+VP + W+ + Y + + K Sbjct: 6 ESPWQQVLDRVRSECKDFFGAVILDALGYEGMCNGYALLTVPDELRENWVNSHYGDLLRK 65 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI--NTNISKSPIILGKQTISPV 153 F + V+ +R +A PS P I P+ K+ + KQ ++ Sbjct: 66 SFTAVFGS-EFVDYRIRQIA-PS----DPIPEIKLTMPVIPRPEKKKAEVKRPKQPLA-- 117 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L +R+ F F+EG N A A Q++AE LNPLF++ GLGKTHLL Sbjct: 118 ----LYARYTFENFVEGECNSTAFRACQAVAENPGDP----ALNPLFVYGESGLGKTHLL 169 Query: 214 QAIANASIKRQPNLRVVYLTAEYFM---WRFASAIRDNCA--LNLKDSLRNIDLLLIDDM 268 Q+IA K +P +VY A F+ ASA+ + L + R L + Sbjct: 170 QSIAAKIQKSRPEASIVYCHAYDFLRDATAMASALHNKTGNVRELAEKFRERYELCDVLL 229 Query: 269 QFL-----QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD-------------- 309 +G Q L+ L KQVV + DR P+ +D Sbjct: 230 LDDVQLLEKGLWTQDRLAILIKHLRAEGKQVVISCDRHPNLFRVVDTDNESRGSSRSSIP 289 Query: 310 ---PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 ++ + L V+V + D R +++ + S+ EE+ +++ Sbjct: 290 SISKKLLAPLASCVAVGIDEPDLATRMNLISKK---SEDLPFAKGDREEICRYLSMQPRK 346 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETK---KMRIEDIQRMVAKHYN 423 + R ++G N L + F A++ + LV E ++ ++I VA Y Sbjct: 347 NVRLIEGLLNFLGAMNMFC---KADLNLNGVKRLVAPSEHGGHVELTAKNIIEAVAMDYR 403 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + +L S R+ + PR+VAM+L + +T S IG F RD+ TV+ A+ ++K + Sbjct: 404 VEVCELSSKRQAAAISMPRKVAMFLCRELTTDSLQNIGAMFC-RDYATVIAAINSLKKQM 462 Query: 484 ETDITLKKEVELLKRLI 500 ETD +L + V+ ++ ++ Sbjct: 463 ETDASLARRVQDIRYML 479 >gi|120601058|ref|YP_965458.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris DP4] gi|120561287|gb|ABM27031.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris DP4] Length = 433 Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 100/372 (26%), Positives = 175/372 (47%), Gaps = 33/372 (8%) Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 T+ S + L ++++ FG+ F F FI N+ L AA+ A + H T Sbjct: 80 TTDRSTVQLPLASESVACPFGAA----FTFDAFITNRKNQFPLAAAREAAR-NGHQRT-- 132 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS----AIRDN-C 249 NP + + G GKTHLL+A+AN V +AE R+ + A+R C Sbjct: 133 -YNPFVLCGASGNGKTHLLRALANELAALYGTDAVFCGSAEELHDRYNTEERLAMRRTLC 191 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 A L + D++ E L + D KQ+ A S+L+ L+ Sbjct: 192 AHRALLLDDLHRLRALPDLR--------EELTALFDHFYDHGKQMAFAYAGRLSDLDFLE 243 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 +RSRL+ G+ V L D ++R + R A L + E ++ +A+ R Sbjct: 244 APLRSRLELGLIVDLKEPDLDVRVRYIHARCAAL-----SLQLAREHVLTLAQRCHEF-R 297 Query: 370 ELDGAFNQLVFRHSFAPILTAEIADELLSHLV---NTGETKKMRIEDIQRMVAKHYNISR 426 L G ++ ++ ++ +I D L ++ ++G + + + I A+H+ ++ Sbjct: 298 HLSGLLLKVA---AYRDMVGRDILDRELEQILRNTDSGPERAVAPDTIISAAAEHFGVTP 354 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+LS++R + +V+ RQVAM+L + + SFP +GR FG +DH+T ++AV+K++K+ + Sbjct: 355 RDILSDKRQQHIVQARQVAMFLCRELIGSSFPALGRMFGGKDHSTAMYAVKKIKKLQYDN 414 Query: 487 ITLKKEVELLKR 498 + V LKR Sbjct: 415 KDMHALVAELKR 426 >gi|16904933|gb|AAL30950.1| DNA polymerase initiator protein [Streptococcus pneumoniae] Length = 163 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 7/163 (4%) Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ GLGKTHLL AI N +K PN RV Y+ AE F+ F +R K + R++ Sbjct: 1 IYGGPGLGKTHLLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSL 60 Query: 261 DLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 DLLLIDD+Q L GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R Sbjct: 61 DLLLIDDIQSLSGKKVATQEEFFNTFNALHDKRKQIVLTSDRSPKHLEGLEERLVTRFSW 120 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 G++ + D+E R +IL+ S+ E N + L ++A Sbjct: 121 GLTQTITPPDFETRIAILQ-----SKTEHLGYNFQSDTLEYLA 158 >gi|296123644|ref|YP_003631422.1| replication initiation factor DnaA protein [Planctomyces limnophilus DSM 3776] gi|296015984|gb|ADG69223.1| Chromosomal replication initiator DnaA domain protein [Planctomyces limnophilus DSM 3776] Length = 353 Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/333 (26%), Positives = 156/333 (46%), Gaps = 23/333 (6%) Query: 167 FIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ N A TAA I E + S R+ ++ G GKTHL++ +A ++KR Sbjct: 19 FLVLPENHFAYTAAMRIVEPMGSMAVQGPRIT--LVYGPKGGGKTHLVRHVARETLKRLA 76 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLL 284 +++ A F A + + LR++++L++D LQ + +Q + ++ Sbjct: 77 RGKLLLANAHEFCQWLLEAHDQKAVVEAHEKLRSLEVLILDGFDELQDRADLQQQLLCVI 136 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 + + D+ ++ +++ P EL L R+ +R GG+ L + R +LA+ Sbjct: 137 DLMADAGGHILIVSEKAPGELRGLSTRLVNRCHGGLCALLKWPGTDSR-----KQLALHF 191 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF----RHSFA--PILTAEIADELLS 398 L ++E + +A + S +L A Q+ HS A ++ + ELL Sbjct: 192 AHQKHLPMSEAAALELAENLAGSPAQLIIAIQQIELMARREHSTADLSLIKRYLQGELL- 250 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + I+ + VA+ + ++ L S R ++VV PR AM L++ MT + Sbjct: 251 -------VPTITIDQVALQVAEEFGVTIEALKSKSRHQSVVLPRHCAMLLARQMTAATLE 303 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 EIGR FGDR+HTTV H K+E++L TL++ Sbjct: 304 EIGRFFGDRNHTTVSHGCAKLEELLPGAPTLRQ 336 >gi|228968642|ref|ZP_04129625.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar sotto str. T04001] gi|228791071|gb|EEM38689.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar sotto str. T04001] Length = 146 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 54/139 (38%), Positives = 87/139 (62%), Gaps = 1/139 (0%) Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQ 415 ++++A + ++ REL+GA ++V S + A++A E L ++ + K + I DIQ Sbjct: 1 MLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIPNSKPKIISIYDIQ 60 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + V Y + D + +R ++V PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA Sbjct: 61 KAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDSSLPKIGEEFGGRDHTTVIHA 120 Query: 476 VRKVEKMLETDITLKKEVE 494 K+ K+L+TD L+K+VE Sbjct: 121 HEKISKLLKTDTQLQKQVE 139 >gi|262189751|ref|ZP_06048106.1| chromosomal replication initiator protein dnaA [Vibrio cholerae CT 5369-93] gi|262034365|gb|EEY52750.1| chromosomal replication initiator protein dnaA [Vibrio cholerae CT 5369-93] Length = 147 Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/144 (44%), Positives = 93/144 (64%), Gaps = 4/144 (2%) Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F PI T + E L L+ E K + I++IQ+ Sbjct: 5 IAKRLRSNVRELEGALNRVIANANFTGRPI-TIDFVREALRDLLALQE-KLVTIDNIQKT 62 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA R Sbjct: 63 VAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACR 122 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+E++ E +K++ L R +S Sbjct: 123 KIEQLREESHDIKEDYSNLIRTLS 146 >gi|18129331|emb|CAC83489.1| DnaA protein [Wolbachia endosymbiont of Brugia pahangi] Length = 163 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 60/169 (35%), Positives = 102/169 (60%), Gaps = 6/169 (3%) Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 +D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E Sbjct: 1 IDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKV-----EQ 55 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETK 407 + + ++VL +AR + ++ REL+GA N++ +T E A E L L+ + + Sbjct: 56 MNMYVPQDVLEFLARNIRSNIRELEGALNKVAHTSLIGRSMTVESASETLMDLLRSNH-R 114 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 + I +IQ+ +A+ +NI D+ SNRR+R +VRPRQ+AMY +K T +S Sbjct: 115 SITIAEIQKKIAEFFNIKVTDMHSNRRLRGLVRPRQIAMYFAKKFTHKS 163 >gi|222874687|gb|EEF11818.1| predicted protein [Populus trichocarpa] Length = 296 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 58/150 (38%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIE 412 EEV VA+ V ++ REL+GA +++ F ++ ++A E L L++ + +++ +E Sbjct: 3 EEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSI-QNRQISVE 61 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTV Sbjct: 62 NIQKTVAVYYKIKVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTV 121 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLISE 502 LHAVRK+ + L +++ +L++ + E Sbjct: 122 LHAVRKIAGERQQLTELNQQLHVLEQTLKE 151 >gi|237733411|ref|ZP_04563892.1| chromosomal replication initiator protein dnaA [Mollicutes bacterium D7] gi|229383446|gb|EEO33537.1| chromosomal replication initiator protein dnaA [Coprobacillus sp. D7] Length = 248 Score = 107 bits (266), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 58/152 (38%), Positives = 88/152 (57%), Gaps = 6/152 (3%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F L+ F F+ GSSNR+A AA ++ + NPLFI+++ GLGKTHLL Sbjct: 102 FRDNLNRTLTFDNFVVGSSNRMAQNAALLVSTNPGSNF-----NPLFIYSNPGLGKTHLL 156 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N + + P LR+ Y+T++ F+ A++ + D +N+D+LLIDD+QFL Sbjct: 157 NAIGNYAKEVNPALRIRYITSKDFVDEVIGAMKGRDGDEIYDKYKNLDILLIDDIQFLFN 216 Query: 274 KLIQHE-FCHLLNSLLDSAKQVVAAADRPPSE 304 K E F H+ N L+++ KQ+V +D+ P E Sbjct: 217 KEKSSEIFFHIFNELINNNKQIVITSDKMPEE 248 >gi|16904917|gb|AAL30942.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904919|gb|AAL30943.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904921|gb|AAL30944.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904923|gb|AAL30945.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904925|gb|AAL30946.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904927|gb|AAL30947.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904929|gb|AAL30948.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904931|gb|AAL30949.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904935|gb|AAL30951.1| DNA polymerase initiator protein [Streptococcus pneumoniae] gi|16904937|gb|AAL30952.1| DNA polymerase initiator protein [Streptococcus pneumoniae] Length = 163 Score = 107 bits (266), Expect = 7e-21, Method: Composition-based stats. Identities = 64/163 (39%), Positives = 91/163 (55%), Gaps = 7/163 (4%) Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ GLGKTHLL AI N +K PN RV Y+ AE F+ F +R K + R++ Sbjct: 1 IYGGPGLGKTHLLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSL 60 Query: 261 DLLLIDDMQFLQGKLI--QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 DLLLIDD+Q L GK + Q EF + N+L D KQ+V +DR P LE L+ R+ +R Sbjct: 61 DLLLIDDIQSLSGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSW 120 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 G++ + D+E R +IL+ S+ E N + L ++A Sbjct: 121 GLTQTITPPDFETRIAILQ-----SKTEHLGYNFQSDTLEYLA 158 >gi|330903338|gb|EGH33910.1| chromosomal replication initiation protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 136 Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 2/134 (1%) Query: 369 RELDGAFNQLV-FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +++ H +T E+ E L L+ + K + +++IQR VA++Y I + Sbjct: 3 RELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKIS 61 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK+ ++ E+D Sbjct: 62 DLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRKINELKESDA 121 Query: 488 TLKKEVELLKRLIS 501 ++++ + L R ++ Sbjct: 122 DIREDYKNLLRTLT 135 >gi|229083315|ref|ZP_04215677.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-44] gi|228699990|gb|EEL52613.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-44] Length = 146 Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 87/139 (62%), Gaps = 1/139 (0%) Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQ 415 ++++A + ++ REL+GA ++V S + A++A E L ++ + K + I DIQ Sbjct: 1 MLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALKDIIPNSKPKIISIYDIQ 60 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + V + + D + +R ++V PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA Sbjct: 61 KAVGDVFQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDSSLPKIGEEFGGRDHTTVIHA 120 Query: 476 VRKVEKMLETDITLKKEVE 494 K+ K+L+TD L+K+VE Sbjct: 121 HEKISKLLKTDTQLQKQVE 139 >gi|238061913|ref|ZP_04606622.1| chromosomal replication initiator protein dnaA [Micromonospora sp. ATCC 39149] gi|237883724|gb|EEP72552.1| chromosomal replication initiator protein dnaA [Micromonospora sp. ATCC 39149] Length = 160 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 1/125 (0%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI+ S GLGKTHLL AI + + V Y++ E F F +++RD+ + Sbjct: 33 NPLFIYGSSGLGKTHLLHAIGHYATTLGNARSVRYVSTEEFTNDFINSVRDDKTSAFQRR 92 Query: 257 LRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R++D+LLIDD+QFL+ + Q EF H N+L ++ KQ+V +DR P +L +L+ R+R+R Sbjct: 93 YRDVDILLIDDIQFLENRERTQEEFFHTFNTLHNANKQIVVTSDRSPKQLATLEDRLRTR 152 Query: 316 LQGGV 320 + G+ Sbjct: 153 FEWGL 157 >gi|32477050|ref|NP_870044.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica SH 1] gi|32447598|emb|CAD79197.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica SH 1] Length = 420 Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 10/270 (3%) Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 RV+Y A F FAS+I ++ L + +L++DD+ + K Q E L + Sbjct: 150 RVLYQPAIDFAREFASSIDSKDMPRFREKLDTVPILVLDDLHLIADKGPAQEELAQRLEA 209 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 + + R PSE+ L P + SR G++V L + R +IL+ L ++ Sbjct: 210 RDAEGRLTIVTCRRLPSEVRGLRPALVSRTLPGLTVTLHPPAGDTRRTILRE-LMLAHL- 267 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPILTAEIADELLSHLVNTG 404 P + L+ ++ R + A Q+ R PI AD + S + G Sbjct: 268 -PDVEPEALSLLDAGLPAESTVRAFESAIKQVALWCRMHEQPI----CADAVQSAIETAG 322 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 ++ + I+ I VA+ + D+ S R + +VR R +AM+L++ +T S +IG F Sbjct: 323 GSQSISIKAITTAVARQLGVKSADMRSGSRRQNIVRARSLAMWLARRLTEDSLTQIGDAF 382 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 G RDH+TVLHA+RK++ L+ D+ L++ + Sbjct: 383 GGRDHSTVLHAIRKIDGSLDDDVLLRRSAD 412 >gi|327541880|gb|EGF28391.1| chromosomal replication initiator protein dnaA [Rhodopirellula baltica WH47] Length = 384 Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/270 (28%), Positives = 130/270 (48%), Gaps = 10/270 (3%) Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 RV+Y A F FAS+I ++ L + +L++DD+ + K Q E L + Sbjct: 114 RVLYQPAIDFAREFASSIDSKDMPRFREKLDTVPILVLDDLHLIADKGPAQEELAQRLEA 173 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 + + R PSE+ L P + SR G++V L + R +IL+ L ++ Sbjct: 174 RDAEGRLTIVTCRRLPSEVRGLRPALVSRTLPGLTVTLHPPAGDTRRTILRE-LMLAHL- 231 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFAPILTAEIADELLSHLVNTG 404 P + L+ ++ R + A Q+ R PI AD + S + G Sbjct: 232 -PDVEPEALSLLDAGLPAESTVRAFESAIKQVALWCRMHEQPI----CADAVQSAIETAG 286 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 ++ + I+ I VA+ + D+ S R + +VR R +AM+L++ +T S +IG F Sbjct: 287 GSQSISIKAITTAVARQLGVKSADMRSGSRRQNIVRARSLAMWLARRLTEDSLTQIGDAF 346 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 G RDH+TVLHA+RK++ L+ D+ L++ + Sbjct: 347 GGRDHSTVLHAIRKIDGSLDDDVLLRRSAD 376 >gi|313640125|gb|EFS04743.1| chromosomal replication initiator protein DnaA [Listeria seeligeri FSL S4-171] Length = 158 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 92/144 (63%), Gaps = 1/144 (0%) Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKM 409 +I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + +++ + Sbjct: 1 DIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSSKSQVI 60 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDH Sbjct: 61 TISGIQETVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEFGGRDH 120 Query: 470 TTVLHAVRKVEKMLETDITLKKEV 493 TTV+HA K+ ++L+TD LK ++ Sbjct: 121 TTVIHAHEKISQLLKTDQVLKNDL 144 >gi|313635497|gb|EFS01733.1| chromosomal replication initiator protein DnaA [Listeria seeligeri FSL N1-067] Length = 160 Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 51/144 (35%), Positives = 92/144 (63%), Gaps = 1/144 (0%) Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKM 409 +I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + +++ + Sbjct: 3 DIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSSKSQVI 62 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDH Sbjct: 63 TISGIQETVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEFGGRDH 122 Query: 470 TTVLHAVRKVEKMLETDITLKKEV 493 TTV+HA K+ ++L+TD LK ++ Sbjct: 123 TTVIHAHEKISQLLKTDQVLKNDL 146 >gi|54019970|ref|YP_115516.1| chromosomal replication initiation protein [Mycoplasma hyopneumoniae 232] gi|53987143|gb|AAV27344.1| chromosomal replication initiator protein [Mycoplasma hyopneumoniae 232] Length = 463 Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 30/342 (8%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++F F FI+ S N + +I Y+ P+FI G+GKTH + AI N Sbjct: 114 NKFTFRNFIKSSYNFQIFSIYDAIVANSRLNYS-----PIFISGPSGIGKTHFINAIGNL 168 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDMQFLQGK-- 274 +++Q +V Y+ F+ +S +++ + + L +D L DD+Q L K Sbjct: 169 LVEKQK--KVFYINDYKFISCVSSWMQNGQNEKISEFLNWLSQVDAFLFDDIQGLANKQQ 226 Query: 275 --LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 ++ E +LN ++ K V+ +D+ PS L + R +R G+ + L E Sbjct: 227 TSIVALE---ILNRFIEEDKTVIITSDKSPSLLGGFEERFITRFSSGLHIKLNKPKKEDF 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 I K++L + +K + + N + +++ S REL+GA +VF + + Sbjct: 284 LRIFKHKL-VEEKLEKHIWTN-DAFEFLSKHFRNSIRELEGALKSIVF---YIQTNKNKF 338 Query: 393 ADELLSHLVNTGE--TKKMRIED------IQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 DE+ E +K IE I +V+K+Y +S D+ S +R + +V R + Sbjct: 339 EDEIYFDKKKMFEIFVEKYEIEQTITPDLIIEVVSKYYGVSILDIKSEKRGKNIVHARDI 398 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 A++L K + + +G F +R H+T++ ++K++ + +++ Sbjct: 399 AIWLIKNILDLTHNSVGTFFNNRRHSTIISTLKKIDTLKQSN 440 >gi|312600974|gb|ADQ90229.1| Chromosomal replication initiator protein dnaA [Mycoplasma hyopneumoniae 168] Length = 463 Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 30/342 (8%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++F F FI+ S N + +I Y+ P+FI G+GKTH + AI N Sbjct: 114 NKFTFRNFIKSSYNFQIFSIYDAIVANSRLNYS-----PIFISGPSGIGKTHFINAIGNL 168 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDMQFLQGK-- 274 +++Q +V Y+ F+ +S +++ + + L +D L DD+Q L K Sbjct: 169 LVEKQK--KVFYINDYKFISCVSSWMQNGQNEKISEFLNWLSQVDAFLFDDIQGLANKQQ 226 Query: 275 --LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 ++ E +LN ++ K V+ +D+ PS L + R +R G+ + L E Sbjct: 227 TSIVALE---ILNRFIEEDKTVIITSDKSPSLLGGFEERFITRFSSGLHIKLNKPKKEDF 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 I K++L + +K + + N + +++ S REL+GA +VF + + Sbjct: 284 LRIFKHKL-VEEKLEKHIWTN-DAFEFLSKHFRNSIRELEGALKSIVF---YIQTNKNKF 338 Query: 393 ADELLSHLVNTGE--TKKMRIED------IQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 DE+ E +K IE I +V+K+Y +S D+ S +R + +V R + Sbjct: 339 EDEIYFDKKKMFEIFVEKYEIEQTITPDLIIEVVSKYYGVSILDIKSEKRGKNIVHARDI 398 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 A++L K + + +G F +R H+T++ ++K++ + +++ Sbjct: 399 AIWLIKNILDLTHNSVGTFFNNRRHSTIISTLKKIDALKQSN 440 >gi|144227417|gb|AAZ44095.2| chromosomal replication initiator protein [Mycoplasma hyopneumoniae J] gi|144575230|gb|AAZ53378.2| chromosomal replication initiator protein [Mycoplasma hyopneumoniae 7448] Length = 463 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 163/340 (47%), Gaps = 26/340 (7%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++F F FI+ S N + +I Y+ P+FI G+GKTH + AI N Sbjct: 114 NKFTFRNFIKSSYNFQIFSIYDAIVANSRLNYS-----PIFISGPSGIGKTHFINAIGNL 168 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDMQFLQGK-- 274 +++Q +V Y+ F+ +S +++ + + L +D L DD+Q L K Sbjct: 169 LVEKQK--KVFYINDYKFISCVSSWMQNGQNEKISEFLNWLSQVDAFLFDDIQGLANKQQ 226 Query: 275 --LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 ++ E +LN ++ K V+ +D+ PS L + R +R G+ + L E Sbjct: 227 TSIVALE---ILNRFIEEDKTVIITSDKSPSLLGGFEERFITRFSSGLHIKLNKPKKEDF 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF-----RHSFAPI 387 I K++L + +K + + N + +++ S REL+GA +VF ++ F Sbjct: 284 LRIFKHKL-VEEKLEKHIWTN-DAFEFLSKHFRNSIRELEGALKSIVFYIQTNKNKFENE 341 Query: 388 LTAEIADELLSHLVNTGETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + + ++ V E ++ D I +V+K+Y +S D+ S +R + +V R +A+ Sbjct: 342 IYFD-KKKMFEIFVEKYEIEQTITPDLIIEVVSKYYGVSILDIKSEKRGKNIVHARDIAI 400 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 +L K + + +G F +R H+T++ ++K++ + +++ Sbjct: 401 WLIKNILDLTHNSVGTFFNNRRHSTIISTLKKIDTLKQSN 440 >gi|71893360|ref|YP_278806.1| chromosomal replication initiation protein [Mycoplasma hyopneumoniae J] gi|72080343|ref|YP_287401.1| chromosomal replication initiation protein [Mycoplasma hyopneumoniae 7448] Length = 466 Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 163/340 (47%), Gaps = 26/340 (7%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++F F FI+ S N + +I Y+ P+FI G+GKTH + AI N Sbjct: 117 NKFTFRNFIKSSYNFQIFSIYDAIVANSRLNYS-----PIFISGPSGIGKTHFINAIGNL 171 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDMQFLQGK-- 274 +++Q +V Y+ F+ +S +++ + + L +D L DD+Q L K Sbjct: 172 LVEKQK--KVFYINDYKFISCVSSWMQNGQNEKISEFLNWLSQVDAFLFDDIQGLANKQQ 229 Query: 275 --LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 ++ E +LN ++ K V+ +D+ PS L + R +R G+ + L E Sbjct: 230 TSIVALE---ILNRFIEEDKTVIITSDKSPSLLGGFEERFITRFSSGLHIKLNKPKKEDF 286 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF-----RHSFAPI 387 I K++L + +K + + N + +++ S REL+GA +VF ++ F Sbjct: 287 LRIFKHKL-VEEKLEKHIWTN-DAFEFLSKHFRNSIRELEGALKSIVFYIQTNKNKFENE 344 Query: 388 LTAEIADELLSHLVNTGETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + + ++ V E ++ D I +V+K+Y +S D+ S +R + +V R +A+ Sbjct: 345 IYFD-KKKMFEIFVEKYEIEQTITPDLIIEVVSKYYGVSILDIKSEKRGKNIVHARDIAI 403 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 +L K + + +G F +R H+T++ ++K++ + +++ Sbjct: 404 WLIKNILDLTHNSVGTFFNNRRHSTIISTLKKIDTLKQSN 443 >gi|259235525|gb|ACW20309.1| replication initiator DnaA [Francisella cf. novicida 3523] Length = 191 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 57/179 (31%), Positives = 98/179 (54%), Gaps = 9/179 (5%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 V P + K +++ ++ + ++ +I K+ FG PL ++VF +F+ G +N Sbjct: 20 VQEPKISKKSNTKDLSSSQEL-FGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDAN 78 Query: 174 RVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 ++A AA ++ +L NPLFI+ GLGKTHL+QAI N + + PN +++Y Sbjct: 79 KIARAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYT 132 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 +E F+ + ++IR + R+ D+LLIDD+QF+ GK EF H N+L ++ Sbjct: 133 NSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYEN 191 >gi|544175|sp|P35892|DNAA_SPIAP RecName: Full=Chromosomal replication initiator protein DnaA gi|416273|dbj|BAA03631.1| DnaA protein [Spiroplasma apis] Length = 263 Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/270 (30%), Positives = 141/270 (52%), Gaps = 20/270 (7%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLL 263 GLGKTHLL+AIA+ + L V Y T+ F +++D + K+ L ID+L Sbjct: 3 GLGKTHLLKAIAHEIGNTKNKLVVKYYTSSDFRKEIVDSLQDGFKEIESTKEKLSKIDVL 62 Query: 264 LIDDMQFL--QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LIDD+QFL GK + +L N +++ KQ+V +D+ P +L D R+ SR G++ Sbjct: 63 LIDDIQFLANSGKTNEIF-FNLFNFFIENNKQIVLTSDKFPEQLNGFDKRLVSRFSQGLN 121 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D +I+ + I LN++EE ++A + R+++G N++ F Sbjct: 122 VKVETPDIITAINIVDYKAKIVN-----LNLSEESKKYIASFFGSDVRKIEGIINKIEFS 176 Query: 382 ----HSFAP-ILTAEIADELLSH--LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 +S AP I+ E ++ L GE + ++ I+ +VA++Y IS + S R Sbjct: 177 IIQDNSAAPKIIELEDINKFLEDYSFAPGGE---ITVQKIKNVVAQNYGISVKSIDSRLR 233 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 + +V+ R VAM+L+ + +++ EIG F Sbjct: 234 MANIVKARHVAMFLTGEILKKNYSEIGVAF 263 >gi|87121029|ref|ZP_01076921.1| chromosomal replication initiator protein, DnaA [Marinomonas sp. MED121] gi|86163867|gb|EAQ65140.1| chromosomal replication initiator protein, DnaA [Marinomonas sp. MED121] Length = 128 Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 47/97 (48%), Positives = 73/97 (75%) Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 + K + I++IQR+VA++Y I +DLLS RR R++ RPRQVAM L+K +T S PEIG F Sbjct: 31 QDKLVNIDNIQRIVAEYYKIKISDLLSKRRNRSIARPRQVAMSLAKELTNHSLPEIGDAF 90 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDHTT LHA+RK++++ +TD ++++ + L R+++ Sbjct: 91 GGRDHTTALHAIRKIKELQDTDSDIREDYKQLMRILT 127 >gi|15828472|ref|NP_325832.1| chromosomal replication initiation protein [Mycoplasma pulmonis UAB CTIP] gi|14089414|emb|CAC13174.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycoplasma pulmonis] Length = 461 Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 162/351 (46%), Gaps = 19/351 (5%) Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 +F F FI+ N A + I +++ G NP+ I GLGKTHLL AI N Sbjct: 119 KFTFDNFIQSKFNENAFLIGKEI--IENPGI----YNPVLISGDSGLGKTHLLNAIGNEF 172 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIR-DNCALNLKD--SLRNIDLLLIDDMQFLQ--GKL 275 +K+ P V +LT F + + +N N K L DL++ DD Q K Sbjct: 173 LKKYPKSIVKFLTPSDFYRKIMPILSSNNINENAKKFKELTEADLVMFDDFQIFSIGNKR 232 Query: 276 IQHEFC-HLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVSVPLGLHDYEMRF 333 F +L+ + + K + +D+ + SL + R+ +RL G+SV + + E Sbjct: 233 ATLNFIFEILDKRIMNNKVTILTSDKDLKFMASLFEQRLYTRLSSGLSVEIEQPNKEDML 292 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA 393 ILK +L I K ++ L + R + S R L+GA +++ F I E Sbjct: 293 KILKFQLKIKNLSPEKWE--KDALDFMVRNFSKSIRFLEGALDKVHFFQLKKQI--NEFN 348 Query: 394 DELLSHLVNTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +S++ E K E I VA +Y + +++L+S R +V R +A+YL + Sbjct: 349 KLTISNIFKNVEITKENTTPERIIEHVANYYKLPKHELISKSRKSNLVVARDMAIYLIRE 408 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 SF IG F +RDH+T+ ++ RK+ + + + + K + L+ I++ Sbjct: 409 DLNYSFSRIGLIFSNRDHSTIFNSHRKISQSINSHDSTKYTITTLRSKINK 459 >gi|18129337|emb|CAC83492.1| DnaA protein [Wolbachia endosymbiont of Litomosoides sigmodontis] Length = 154 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 96/160 (60%), Gaps = 6/160 (3%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + ++++VL Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKV-----EQMNIYVSQDVLEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +A+ + ++ REL+GA N++ +T E A E L L+ + + + I +IQ+ +A Sbjct: 56 LAKNIKSNIRELEGALNKVAHTSLIGRSVTVESASETLIDLLRSNH-RSITIAEIQKKIA 114 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 + +NI D+ SNRR+R +VRPRQ+AMY +K T +S P+ Sbjct: 115 EFFNIKVTDMHSNRRLRGLVRPRQIAMYFAKKFTHKSLPD 154 >gi|330902069|gb|EGH33364.1| chromosomal replication initiation protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 117 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/114 (47%), Positives = 78/114 (68%), Gaps = 1/114 (0%) Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+ E L L+ + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM Sbjct: 4 ITIELIRESLKDLLAL-QDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMA 62 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LSK +T S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 63 LSKELTNHSLPEIGDVFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 116 >gi|301631933|ref|XP_002945046.1| PREDICTED: DNA polymerase III subunit beta-like [Xenopus (Silurana) tropicalis] Length = 554 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/132 (40%), Positives = 82/132 (62%), Gaps = 9/132 (6%) Query: 371 LDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +D FNQ + LT E +LLS + +++ +E+IQ+ VA +Y I D+ Sbjct: 62 VDSRFNQ----KEVSIQLTREALRDLLSI-----QNRQISVENIQKTVADYYKIKVADMY 112 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ +T+ L Sbjct: 113 SKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAAERQTNTELN 172 Query: 491 KEVELLKRLISE 502 +++ +L++ + E Sbjct: 173 QQLHVLEQTLKE 184 >gi|87308267|ref|ZP_01090408.1| chromosomal replication initiator protein DnaA [Blastopirellula marina DSM 3645] gi|87288824|gb|EAQ80717.1| chromosomal replication initiator protein DnaA [Blastopirellula marina DSM 3645] Length = 372 Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 89/341 (26%), Positives = 157/341 (46%), Gaps = 20/341 (5%) Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G NR+ TA +++ H + NP+ + GK+HL + + P+ Sbjct: 40 FLGGPENRLVRTAVEAL----DHPHPP--WNPVVFYGPTATGKSHLAAGLLARWKQSHPD 93 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHL-LN 285 +VV T F +A R ++ +++D LLID++ L E L L+ Sbjct: 94 SQVVTTTGADFSRTITTAARRGEPVDFMSIWQSVDALLIDNLHELANFPSAQELLVLRLD 153 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L+ S + V+A P E SL R+ SRL G+ VP+ E + + LA+ Sbjct: 154 ELIASDRLVLATCVGNPLENFSLSRRLVSRLSSGLLVPV-----EPPSAATRQALALHFA 208 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTA-----EIADELLSH 399 ++++ +A +T+ EL G +L R P L +A Sbjct: 209 MQHQVDMTAAAAKQLAEAFSTNLPELQGMLLELFAREFGSTPQLGKMRRIDSLAARRFIS 268 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 + TG T + + I A++Y + DL R +++V R A++L++ +T SF Sbjct: 269 VKVTGRTPSL--QAISSAAARYYQVKITDLRGPSRRQSIVAARDAAIFLARKLTKSSFAA 326 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IG+ FG RDHTT++H+++K+E + + + + ++ L+RLI Sbjct: 327 IGKHFGGRDHTTIMHSIQKLETRRKREASTQSALDELERLI 367 >gi|220903289|ref|YP_002478601.1| Chromosomal replication initiator DnaA domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867588|gb|ACL47923.1| Chromosomal replication initiator DnaA domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 457 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 93/351 (26%), Positives = 165/351 (47%), Gaps = 55/351 (15%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F+ FI N L A+ +A D+ T+ NP + G GK+ LLQA+ + Sbjct: 113 FADFICNDKNAFPLATARDLA-ADT---TSTAYNPFLVCGRSGTGKSRLLQAMTCVMSRT 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR------NIDLLLIDDMQFLQG-KLI 276 R++ +A F C+ +L + R D+L++DD+Q L G Sbjct: 169 ADPARMICSSAARF-----------CSEHLVWARRPELFWLRYDVLVLDDIQDLAGHDAW 217 Query: 277 QHEFCHLLNS----------------LLDSAKQVVAAADR-------PPSELESLDPRIR 313 Q + ++++ + + +Q+ AA R P L++LD R+R Sbjct: 218 QRKLVTIIDTCPGRQKNLPGIPSGEDIPSAGEQIHRAAPRMIFACSGQPQALKALDERLR 277 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRL+ G+ V L D ++R L+ + KE +L + E L+ +A+ + R L G Sbjct: 278 SRLESGLVVELMEPDLDVRLRYLQ----VICKER-RLPLTREQLLFLAQRCSQF-RLLQG 331 Query: 374 AFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKM-RIEDIQRMVAKHYNISRNDLLSN 432 ++ ++ + + + ++V TG +KM +I VA+ N+ D+L Sbjct: 332 LMLKV---GAYCAVKGNNLTQSDMENIVRTGVAEKMPGCREILGEVARRLNLRPEDVLGA 388 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +R +V RQV+MY+ + S+PE+GR FG RDH+TV++A+ K++K++ Sbjct: 389 KRRPDLVLARQVSMYICRRKLGLSYPELGRAFGGRDHSTVIYAINKIKKLM 439 >gi|330903390|gb|EGH33962.1| chromosomal replication initiation protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 163 Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/168 (32%), Positives = 95/168 (56%), Gaps = 6/168 (3%) Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Sbjct: 1 NHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERS 60 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL Sbjct: 61 QEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL 120 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + + + K+++ + +A+ + ++ REL+GA +++ F Sbjct: 121 -----MKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHF 163 >gi|18129319|emb|CAC83484.1| DnaA protein [Wolbachia endosymbiont of Dirofilaria immitis] Length = 150 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 94/156 (60%), Gaps = 6/156 (3%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + ++VL Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKV-----EQMNIYVPDDVLEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +AR + ++ REL+GA N++ +T E A E L+ L+ + K++ I +IQ+ +A Sbjct: 56 LARNIKSNIRELEGALNKVAHTSLIGRSMTVESASETLADLLRSNH-KQITIAEIQKKIA 114 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 + +NI D+ SNRR+R +VRPRQVAMY +K T + Sbjct: 115 EFFNIKVADMHSNRRLRGLVRPRQVAMYFAKKFTQK 150 >gi|218678462|ref|ZP_03526359.1| chromosomal replication initiation protein [Rhizobium etli CIAT 894] Length = 111 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 46/77 (59%), Positives = 56/77 (72%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 ++V + E+ +F VS+RLK QVGPDVYASWF RLK HSV ++V LSVPT FLK+ Sbjct: 33 LEVGEEKAEMKHGILFERVSARLKAQVGPDVYASWFARLKLHSVSKSVVRLSVPTTFLKS 92 Query: 84 WIKNRYLETITKLFQEE 100 WI NRYL+ IT LFQ E Sbjct: 93 WINNRYLDLITGLFQAE 109 >gi|325108799|ref|YP_004269867.1| replication initiation factor DnaA protein [Planctomyces brasiliensis DSM 5305] gi|324969067|gb|ADY59845.1| Chromosomal replication initiator DnaA domain protein [Planctomyces brasiliensis DSM 5305] Length = 341 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 82/324 (25%), Positives = 154/324 (47%), Gaps = 13/324 (4%) Query: 182 SIAEVDSHGYTTVRLNP--LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-EYFM 238 ++A V+ T ++P LF+ G GK+HL+ A R +R L+A E+ Sbjct: 18 AVAAVERLFAETPAIDPPLLFLFGPSGAGKSHLVMQALEAFHHRYEGVRQRTLSAYEFAT 77 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAA 297 SA + + L ++D+ + + +Q F + +Q + L++ +L S +V+ Sbjct: 78 LNMESAAGEEETAAQLEELADLDVFVCEGVQHFDRQTWLQKKLILLIDDILRSGGRVILT 137 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 + P E P++ SR GV+ + + E R +++ AI L I+ + Sbjct: 138 SQLPVGAYEQTHPKLVSRFHSGVTASMAMPGVESRKRLIQYFAAIH-----DLEIHPTAV 192 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKM-RIEDIQR 416 +AR + S RE+ GA QL + + EI + + L+ + + + + D+ R Sbjct: 193 EQLARKMPVSPREMHGAIVQL---EAVQRLEEREIDNGTVEELLAFQQPRNVPSMTDVAR 249 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VAK + ++ + S R +T++ PRQVAM LS+ + ++ +IG +G R H+TV+HA Sbjct: 250 SVAKEFGVTVRSIRSPARAQTLLIPRQVAMLLSRELIQANYSDIGAYYGGRSHSTVMHAC 309 Query: 477 RKVEKMLETDITLKKEVELLKRLI 500 + + + L V L+R++ Sbjct: 310 QALTRKSSGSPELDYRVCQLRRVL 333 >gi|293363862|ref|ZP_06610598.1| putative chromosomal replication initiator protein DnaA [Mycoplasma alligatoris A21JP2] gi|292552352|gb|EFF41126.1| putative chromosomal replication initiator protein DnaA [Mycoplasma alligatoris A21JP2] Length = 465 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 88/339 (25%), Positives = 165/339 (48%), Gaps = 30/339 (8%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S D + F T+++ N+ + A + + ++ P++I AS G GKTHLL A Sbjct: 122 SSFDKNYSFKTYVQSDFNKETINACKLLIN------NEFKMTPIYIQASSGFGKTHLLNA 175 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDMQ-FL 271 I N IK Y+ F A+ +++N + L +DLL+ DD+Q F Sbjct: 176 IGNEFIKNGK--TAFYINPSVFSRDIATYLQENNQNKISKLLNYYCEVDLLMFDDIQVFG 233 Query: 272 QGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVSVPLGLH 327 G+ IQ F +++ + K + A++ P L+SL D RI +RL G + Sbjct: 234 NGQKKATIQFIF-QIIDHRIQKEKPTLFASEGPIQSLKSLFDNRIITRLSSGFITQIKPP 292 Query: 328 DYEMRFSILKNRLAISQKEDPKL-NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 + + + +L L +KEDP L NI++E + R ++ R + A ++ + Sbjct: 293 NKDDFYKLLNFFL---EKEDPLLKNISKESKNFIIRNYCSNVRNISAAVKRIGYYK--KD 347 Query: 387 ILTAEIADELLSH----LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I+ + +D ++ + LV E+ + + I V+K+Y I + +++ R + +V R Sbjct: 348 IIDSNYSDVVVENSFKDLVKDKES--ITPDLIIETVSKYYKIPKKEIIGASRKKEIVVAR 405 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 +AM + + S EIG+ F ++DH+T+++A++K ++ Sbjct: 406 HMAMIIIRNHLELSLEEIGKIF-NKDHSTIINAIKKYDE 443 >gi|254251052|ref|ZP_04944370.1| ATPase involved in DNA replication initiation [Burkholderia dolosa AUO158] gi|124893661|gb|EAY67541.1| ATPase involved in DNA replication initiation [Burkholderia dolosa AUO158] Length = 168 Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 49/113 (43%), Positives = 73/113 (64%), Gaps = 1/113 (0%) Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 ++ E+ E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMY Sbjct: 55 ISIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMY 113 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 114 LAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTL 166 >gi|168702517|ref|ZP_02734794.1| chromosomal replication initiator protein DnaA [Gemmata obscuriglobus UQM 2246] Length = 347 Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 160/345 (46%), Gaps = 36/345 (10%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR---LNPLFIHASVGLGKTHL----LQAI 216 ++ F+ NRVA+ A +S+ T R NP+ +H G GK+ L +Q + Sbjct: 24 WNGFLVLPENRVAVRALRSVC----RSVLTRRRPGANPVVLHGPPGTGKSRLSASLVQQL 79 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 AN S ++A+ S D L+ D + DLL ++D+Q L + Sbjct: 80 ANTSDG---------VSAQVVSAGDVSRAPDE-GLD-DDVFVSCDLLALEDVQHLSTRAA 128 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 + + LL+ + V A P++L L R+ SRL G+ V L R +IL Sbjct: 129 E-DATELLDRRTARRRATVVTASAGPAQLAHLPQRLTSRLSSGLVVRLEPLSAPSRLAIL 187 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSG-RELDGAFNQLV-FRHSFAPILTAEIAD 394 A Q++ + + + L +A T G R G L +F LT Sbjct: 188 AE--AARQRQ---VRLTPDALEWLASQTTGGGVRTTLGLLQNLAQVAAAFPGALTRA--- 239 Query: 395 ELLSHLVNTGE--TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 ++ L ++G+ + I I A + ++ +LL R+R V+RPRQVAMYL++ + Sbjct: 240 DVQQALADSGQPTSAAPDISGIVERTAAAFGVTVKELLGASRLRGVMRPRQVAMYLAREL 299 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 T S P +G FG RDHTTVLHA RKVE + D++L K+V L+ Sbjct: 300 TGLSLPRLGAAFG-RDHTTVLHACRKVEAEVAADLSLAKQVNDLR 343 >gi|37805746|emb|CAD56947.1| DNAA protein [Wolbachia endosymbiont of Drosophila simulans] Length = 145 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 6/139 (4%) Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ + Sbjct: 13 FELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSM 67 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY Sbjct: 68 TVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYF 126 Query: 449 SKIMTPRSFPEIGRRFGDR 467 +K T +S P+IGR FG R Sbjct: 127 AKKFTQKSLPDIGRNFGGR 145 >gi|37805742|emb|CAD56945.1| DNAA protein [Wolbachia endosymbiont of Nasonia vitripennis] Length = 145 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 6/139 (4%) Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ + Sbjct: 13 FELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSM 67 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY Sbjct: 68 TVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYF 126 Query: 449 SKIMTPRSFPEIGRRFGDR 467 +K T +S P+IGR FG R Sbjct: 127 AKKFTQKSLPDIGRXFGGR 145 >gi|37805758|emb|CAD56953.1| DNAA protein [Wolbachia endosymbiont of Protocalliphora sialia] Length = 145 Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 82/131 (62%), Gaps = 3/131 (2%) Query: 339 RLAISQKEDPKLNIN--EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 RL I Q + ++NI ++VL +AR + ++ REL+GA N++ +T E A E Sbjct: 16 RLGILQAKVERMNIYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSMTVESASET 75 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T +S Sbjct: 76 LIDLLRSNH-RSITIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQKS 134 Query: 457 FPEIGRRFGDR 467 P+IGR FG R Sbjct: 135 LPDIGRNFGGR 145 >gi|149003110|ref|ZP_01828019.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS69] gi|147758851|gb|EDK65847.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS69] Length = 188 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 59/176 (33%), Positives = 101/176 (57%), Gaps = 8/176 (4%) Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFA 385 D+E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 17 DFETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKI 71 Query: 386 PILTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T +IA E + + + + + I+ IQ V Y +S ++ +RR++ +V RQV Sbjct: 72 KDITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQV 131 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 132 AMYLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKI 187 >gi|298217520|emb|CAA83731.2| DnaA protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 240 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/214 (27%), Positives = 114/214 (53%), Gaps = 8/214 (3%) Query: 261 DLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+L+IDD+QFL K +E F + N+ +++ Q+ ++D+ P L D R+ +R G Sbjct: 28 DVLIIDDVQFLSYKZKTNEIFFTIFNNFIENDXQLFFSSDKSPELLNGFDNRLITRFNMG 87 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 +S+ + D + +I+K + + ++ K + E + ++ + R++ G+ ++L Sbjct: 88 LSIAIQKLDNKTATAIIKKEI---KNQNIKTEVTNEAINFISNYYSDDVRKIKGSVSRLN 144 Query: 380 FRHSFAP---ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 F P ++T EI +L + T + + ++ I+ +V++ Y IS N + R + Sbjct: 145 FWSQQNPEEKVITIEIISDLFRD-IPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSK 203 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 ++V R +AMYL+K + + +IG FG RDHT Sbjct: 204 SIVTARHIAMYLTKEILNHTLAQIGEEFGGRDHT 237 >gi|37805744|emb|CAD56946.1| DNAA protein [Wolbachia endosymbiont of Drosophila melanogaster] Length = 145 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 85/139 (61%), Gaps = 6/139 (4%) Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ + Sbjct: 13 FELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSM 67 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY Sbjct: 68 TVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYF 126 Query: 449 SKIMTPRSFPEIGRRFGDR 467 +K T +S P+IGR FG R Sbjct: 127 AKKFTQKSLPDIGRXFGGR 145 >gi|294155301|ref|YP_003559685.1| chromosomal replication initiator protein DnaA [Mycoplasma crocodyli MP145] gi|291600380|gb|ADE19876.1| chromosomal replication initiator protein DnaA [Mycoplasma crocodyli MP145] Length = 434 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 98/351 (27%), Positives = 162/351 (46%), Gaps = 29/351 (8%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 +D F F +++ N A+ A +S+ + +L+P+FI AS GLGKTHLL AI Sbjct: 93 IDKDFTFDSYVVSDFNAEAIEACKSLITNEK------KLSPIFIQASSGLGKTHLLHAIG 146 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--ALNLKDSLRN-IDLLLIDDMQFL--- 271 N IK V++ F +++N L L +L DL++ DD+Q Sbjct: 147 NEFIKLGKT--AVHINPNTFTREITFLLQENDPRKLTLLTNLYTEADLVMFDDIQLFGVG 204 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVSV---PLGLH 327 Q K + ++++ + K + A + L+ + D RI +R G S PL Sbjct: 205 QKKSTINFIFQIIDNRIQKEKPTIFACETSIQSLKGIFDERIITRFSFGFSTQIKPLNKE 264 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAP 386 D E S R + D KL I+ E + R + + R + GA ++ F+ Sbjct: 265 DLEKILSFFLERFDV----DLKL-IDLESRNFLIRNNSNNVRAIYGAVKRVSYFKKELEN 319 Query: 387 ILTAEIADELLSHLVN-TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 T + D + + E + + I V+K+Y I + D+L R + V+ R +A Sbjct: 320 --TNYVYDVICNAFKGIIKEIGTISPDTILDAVSKYYKIPKKDMLGKTRKKEVIIARHIA 377 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 M L K+ + EIG+ F ++DH+TV++A+RK+E E D +LK + L Sbjct: 378 MSLIKMHLKLTLEEIGKIF-NKDHSTVINAIRKIESQ-ENDKSLKNALSYL 426 >gi|37805748|emb|CAD56948.1| DNAA protein [Wolbachia endosymbiont of Nasonia vitripennis] gi|37805750|emb|CAD56949.1| DNAA protein [Wolbachia endosymbiont of Nasonia longicornis] gi|37805752|emb|CAD56950.1| DNAA protein [Wolbachia endosymbiont of Nasonia giraulti] Length = 145 Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 88/149 (59%), Gaps = 6/149 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 3 GLVAAINETTFELRLGILQAKV-----ERMNMYVPKDVLEFLARNIKSNIRELEGALNKV 57 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T E A E L L+ + + + IE+IQ+ +A+ +NI D+ SNRR+R++ Sbjct: 58 AHTSLIGRSMTVESASETLIDLLRSNH-RSITIEEIQKKIAEFFNIKIADMQSNRRLRSL 116 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 RPRQ+AMY +K T +S P+IGR FG R Sbjct: 117 ARPRQIAMYFAKKFTQKSLPDIGRNFGGR 145 >gi|37805754|emb|CAD56951.1| DNAA protein [Wolbachia endosymbiont of Tribolium confusum] Length = 145 Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 84/139 (60%), Gaps = 6/139 (4%) Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ + Sbjct: 13 FELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSM 67 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A E L L+ + + + IE+IQ+ +A+ +NI D+ SNRR+R++ RPRQ+AMY Sbjct: 68 TVESASETLIDLLRSNH-RSITIEEIQKKIAEFFNIKIADMQSNRRLRSLARPRQIAMYF 126 Query: 449 SKIMTPRSFPEIGRRFGDR 467 +K T +S P IGR FG R Sbjct: 127 AKKFTQKSLPXIGRNFGGR 145 >gi|264658023|emb|CBH31231.1| chromosomal replication initiator protein [Wolbachia endosymbiont of Simulium squamosum] Length = 99 Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 42/94 (44%), Positives = 68/94 (72%), Gaps = 1/94 (1%) Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 +VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Q EF H N+ Sbjct: 6 KVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQEEFFHTFNA 65 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ Sbjct: 66 LIDQNKQLVISADRSPSDLDGVEERIKSRLGWGL 99 >gi|37805762|emb|CAD56955.1| DNAA protein [Wolbachia endosymbiont of Sitophilus oryzae] Length = 145 Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 51/139 (36%), Positives = 83/139 (59%), Gaps = 6/139 (4%) Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ + Sbjct: 13 FELRLGILQAKV-----EQMNIYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSM 67 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A E L L+ + + IE+IQ+ +A+ +NI D SNRR+R++ RPRQ+AMY Sbjct: 68 TVESASETLIDLLRSNH-RSXTIEEIQKKIAEFFNIKIADXQSNRRLRSLARPRQIAMYF 126 Query: 449 SKIMTPRSFPEIGRRFGDR 467 +K T +S P+IGR FG R Sbjct: 127 AKKFTQKSLPDIGRNFGGR 145 >gi|212703753|ref|ZP_03311881.1| hypothetical protein DESPIG_01801 [Desulfovibrio piger ATCC 29098] gi|212672721|gb|EEB33204.1| hypothetical protein DESPIG_01801 [Desulfovibrio piger ATCC 29098] Length = 453 Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 100/343 (29%), Positives = 156/343 (45%), Gaps = 39/343 (11%) Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G+ N L A+++A + G++ P +H G GK+HLL +A A++ RQ +LRV Sbjct: 126 GARNAFPLAMARAVA-LREPGHS-----PFLLHGEKGTGKSHLLHHMA-AALARQ-DLRV 177 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDS---LRNIDLLLIDDMQFLQGKLIQHEFCHLLNS 286 + A F +C L + + + D L +DD+Q L G Q F LL + Sbjct: 178 ILAPAARFF--------QHCPLEEQTAPLFWQQADALFLDDIQTLGG---QPRFQRLLAA 226 Query: 287 LLDSAKQ---VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 LL + VV A + P L + +P +R++ S L D E R L+ Sbjct: 227 LLAHRPEKAPVVLALEGGPDVLGTWEPGPAARVRQLFSAELTPPDMEARMRYLQQ----C 282 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL--LSHLV 401 +E+ L++ E L +AR G L+ R A A L L L Sbjct: 283 CREN-ALDLPREHLRLMARRAA----HFHG-LRSLLLRVKAAWEDAAAPRPSLDDLERLA 336 Query: 402 NTGETKKMRI--EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 TG + E I A+ + + D+ R +V RQ AMY+ + S+PE Sbjct: 337 RTGPVQSCHAGHEQILAEAARCCDAAPADITGTGRHARLVMARQAAMYVCRRHLGLSYPE 396 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +GR FG RDH+TV+HAV+K+ KMLE++ ++ V L++ + Sbjct: 397 LGRAFGGRDHSTVIHAVKKIGKMLESNKDVQHLVARLEKCAHQ 439 >gi|30749314|pdb|1J1V|A Chain A, Crystal Structure Of Dnaa Domainiv Complexed With Dnaabox Dna Length = 94 Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 62/91 (68%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I++IQ+ VA++Y I DLLS RR R+V RPRQ A L+K +T S PEIG FG RDHT Sbjct: 3 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQXAXALAKELTNHSLPEIGDAFGGRDHT 62 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TVLHA RK+E++ E +K++ L R +S Sbjct: 63 TVLHACRKIEQLREESHDIKEDFSNLIRTLS 93 >gi|110224523|emb|CAJ98759.1| replication initiator [Francisella novicida] gi|259236200|gb|ACW20340.1| DnaA [Francisella sp. FnSp1] Length = 157 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/159 (31%), Positives = 88/159 (55%), Gaps = 8/159 (5%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 V P + K +++ ++ + ++ +I K+ FG PL ++VF +F+ G +N Sbjct: 5 VQEPKISKKSNTKDLSSSQEL-FGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDAN 63 Query: 174 RVALTAAQSIAEVDSHGYTTVRL-NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 ++A AA ++ +L NPLFI+ GLGKTHL+QAI N + + PN +++Y Sbjct: 64 KIARAAAMQVS------INPGKLHNPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYT 117 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 +E F+ + ++IR + R+ D+LLIDD+QF+ Sbjct: 118 NSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFI 156 >gi|110224499|emb|CAJ98747.1| replication initiator [Francisella novicida] Length = 157 Score = 92.0 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 + V P + K ++S + + ++ +I K+ FG PL ++VF +F+ G Sbjct: 3 KVVQEPKISKKSNSKDFSSSQEL-FGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGD 61 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 +N++A AA ++ Y NPLFI+ GLGKTHL+QAI N + + PN +++Y Sbjct: 62 ANKIARAAAMQVSINPGKLY-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIY 116 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 +E F+ + ++IR + R+ D+LLIDD+QF+ Sbjct: 117 TNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFI 156 >gi|18129327|emb|CAC83487.1| DnaA protein [Wolbachia endosymbiont of Onchocerca volvulus] Length = 141 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/147 (36%), Positives = 88/147 (59%), Gaps = 6/147 (4%) Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 RI+SRL G+ + +E+R IL+ ++ E + + ++VL +A+ + ++ RE Sbjct: 1 RIKSRLGWGLVADINETTFELRLGILQIKV-----EQMNIYVPDDVLEFLAKNIKSNIRE 55 Query: 371 LDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 L+GA N++V +T E A E L+ L+ + K + I +IQ+ +A+ +NI D+ Sbjct: 56 LEGALNKVVHTSLIGRSITVESASETLADLLRSNH-KPITIAEIQKKIAEFFNIKVADMH 114 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSF 457 SNRR+R +VRPRQVAMY +K T +SF Sbjct: 115 SNRRLRALVRPRQVAMYFAKKFTQKSF 141 >gi|1352277|sp|P35889|DNAA_MYCMY RecName: Full=Chromosomal replication initiator protein DnaA gi|1731908|dbj|BAA03629.1| DnaA protein [Mycoplasma mycoides] Length = 263 Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 132/264 (50%), Gaps = 8/264 (3%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL--NLKDSLRNIDLL 263 G+GKTHLL+A N +L+V Y++ + F + ++ K+ + D+L Sbjct: 3 GMGKTHLLKAAKNYIESNFFDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEVCQNDVL 62 Query: 264 LIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+QFL K +E F + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ Sbjct: 63 IIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSI 122 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D + +I+K + + ++ K + E + ++ + R++ G+ ++L F Sbjct: 123 AIQKLDNKTATAIIKKEI---KNQNIKSEVTSEAINFISNYYSDDVRKIKGSVSRLNFWS 179 Query: 383 SFAPILTAEIADEL--LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 P + + L + T + + ++ I+ +V++ Y IS N + R +++V Sbjct: 180 QQNPEEKIITIEIISDLFRDIPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVT 239 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRF 464 R +AM+L+K + + +IG F Sbjct: 240 ARHIAMFLTKEILNHTLAQIGEEF 263 >gi|295094325|emb|CBK83416.1| ATPase involved in DNA replication initiation [Coprococcus sp. ART55/1] Length = 170 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 52/155 (33%), Positives = 85/155 (54%), Gaps = 4/155 (2%) Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +ILKN+ I D I+EE+ ++A +T + REL+GA N+L I +T E Sbjct: 1 MAILKNKAEIKGLTDI---ISEEIFEYIANNITYNVRELEGALNKLSVYSELGDIKITEE 57 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A +L ++ + E I V++H NIS +D++S +R + + RQ++MYL + Sbjct: 58 LAKNVLKDFISKDSKVTITPELIINTVSEHTNISVSDIVSTKRSQDIATARQISMYLCRK 117 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 T + IG FG +DH+TV ++KVE +E D Sbjct: 118 YTDKGLKSIGDAFGGKDHSTVHSNIQKVEDKIEKD 152 >gi|291532565|emb|CBL05678.1| ATPase involved in DNA replication initiation [Megamonas hypermegale ART12/1] Length = 163 Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 54/160 (33%), Positives = 93/160 (58%), Gaps = 9/160 (5%) Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGE-- 405 L++ +V+ ++A + + REL+GA ++V SF P+ T E+A ++L + + E Sbjct: 4 LDVPLDVMTYIASHIDNNVRELEGALTRVVAYASFKHYPV-TNELAVDVLKNTITKQEPT 62 Query: 406 ----TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 K + I IQ VAK++ ++ DL +R R + PRQ+AM+L++ MT S P IG Sbjct: 63 VKQADKIINIALIQETVAKYFKLTLADLNGKKRNRNIAFPRQIAMFLAREMTDASLPRIG 122 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTV+HA K++K + + ++ +++LI+ Sbjct: 123 GNFGGRDHTTVMHAHDKIKKQYQDNPKTASVIDEIRKLIT 162 >gi|313611871|gb|EFR86328.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL F2-208] Length = 120 Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 70/106 (66%) Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +TA +A E L ++ + +++ + I IQ V +++++ D + +R +++ PRQ+AMY Sbjct: 1 ITAGLAAEALKDIIPSSKSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMY 60 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 LS+ +T S P+IG FG RDHTTV+HA K+ ++L+TD LK ++ Sbjct: 61 LSRELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDL 106 >gi|110224493|emb|CAJ98744.1| replication initiator [Francisella tularensis subsp. mediasiatica] gi|110224495|emb|CAJ98745.1| replication initiator [Francisella tularensis subsp. mediasiatica] gi|110224503|emb|CAJ98749.1| replication initiator [Francisella tularensis subsp. tularensis ATCC 6223] gi|110224505|emb|CAJ98750.1| replication initiator [Francisella tularensis subsp. tularensis] gi|110224507|emb|CAJ98751.1| replication initiator [Francisella tularensis subsp. tularensis] gi|110224509|emb|CAJ98752.1| replication initiator [Francisella tularensis subsp. mediasiatica] gi|110224511|emb|CAJ98753.1| replication initiator [Francisella tularensis subsp. holarctica] gi|110224513|emb|CAJ98754.1| replication initiator [Francisella tularensis subsp. holarctica] gi|110224515|emb|CAJ98755.1| replication initiator [Francisella tularensis subsp. holarctica] Length = 157 Score = 89.7 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 87/160 (54%), Gaps = 6/160 (3%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 + V P + K ++S + + ++ +I K+ FG PL ++VF +F+ G Sbjct: 3 KVVQEPKISKKSNSKDFSSSQEL-FGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGD 61 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 +N++A AA ++ + NPLFI+ GLGKTHL+QAI N + + PN +++Y Sbjct: 62 ANKIARAAAMQVSINPGKLH-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIY 116 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 +E F+ + ++IR + R+ D+LLIDD+QF+ Sbjct: 117 TNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFI 156 >gi|37805760|emb|CAD56954.1| DNAA protein [Wolbachia endosymbiont of Drosophila recens] Length = 140 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 85/144 (59%), Gaps = 6/144 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 3 GLVADINETTFELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKV 57 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ Sbjct: 58 THTSLIGRRMTVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSL 116 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGR 462 RPRQ+AMY +K T +S P+IGR Sbjct: 117 ARPRQIAMYFAKKFTQKSLPDIGR 140 >gi|262363790|gb|ACY60511.1| chromosomal replication initiator protein [Yersinia pestis D106004] Length = 211 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/221 (26%), Positives = 110/221 (49%), Gaps = 27/221 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALPS----------VEKTASSP--SITKLSPINTNISKSPII 144 + G E+ + + S V + S+P +T+ +P+ + SP Sbjct: 63 LND----FCGTEVPLLRFEVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDNSP-- 116 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + +S + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 117 -AQPELS--YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 168 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 GLGKTHLL A+ N + R+ N VVY+ +E F R+ ++ Sbjct: 169 TGLGKTHLLHAVGNGIMARKANATVVYMHSETFCARYGQSL 209 >gi|325143792|gb|EGC66109.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240013] Length = 131 Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 5/131 (3%) Query: 373 GAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQ-RMVAKHYNISRNDL 429 GAFN++ F P++ ++A L ++ E K+ DI VAK+Y I +D+ Sbjct: 1 GAFNRVGASSRFMNRPVIDIDLARTALQDII--AEKHKVITADIIIDAVAKYYRIKISDV 58 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 L +R R + RPRQVAM L+K +T S P IG FG RDHTTV+H +R V K+ E D L Sbjct: 59 LGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPEL 118 Query: 490 KKEVELLKRLI 500 ++ E L LI Sbjct: 119 AQDYEKLLILI 129 >gi|110224519|emb|CAJ98757.1| replication initiator [Francisella tularensis subsp. holarctica] gi|110224521|emb|CAJ98758.1| replication initiator [Francisella tularensis subsp. holarctica] Length = 157 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 +I K+ FG PL ++VF +F+ G +N++A AA ++ + NPLFI+ Sbjct: 33 LITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIY 87 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHL+QAI N + + PN +++Y +E F+ + ++IR + R+ D+ Sbjct: 88 GGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADI 147 Query: 263 LLIDDMQFL 271 LLIDD+QF+ Sbjct: 148 LLIDDIQFI 156 >gi|110224497|emb|CAJ98746.1| replication initiator [Francisella novicida] gi|110224501|emb|CAJ98748.1| replication initiator [Francisella novicida] Length = 157 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 +I K+ FG PL ++VF +F+ G +N++A AA ++ + NPLFI+ Sbjct: 33 LITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIY 87 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHL+QAI N + + PN +++Y +E F+ + ++IR + R+ D+ Sbjct: 88 GGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADI 147 Query: 263 LLIDDMQFL 271 LLIDD+QF+ Sbjct: 148 LLIDDIQFI 156 >gi|110224517|emb|CAJ98756.1| replication initiator [Francisella tularensis subsp. holarctica] Length = 157 Score = 88.6 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 5/129 (3%) Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 +I K+ FG PL ++VF +F+ G +N++A AA ++ + NPLFI+ Sbjct: 33 LITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIY 87 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHL+QAI N + + PN +++Y +E F+ + ++IR + R+ D+ Sbjct: 88 GGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADI 147 Query: 263 LLIDDMQFL 271 LLIDD+QF+ Sbjct: 148 LLIDDIQFI 156 >gi|37805756|emb|CAD56952.1| DNAA protein [Wolbachia endosymbiont of Trichogramma deion] Length = 145 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 6/139 (4%) Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ + Sbjct: 13 FELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSM 67 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A E L L+ + + + IE+IQR A+ +NI D+ SNRR+R++ R Q+AMY Sbjct: 68 TVESASETLIDLLRSNH-RSITIEEIQRKXAEFFNIKVADMQSNRRLRSLGRXGQIAMYF 126 Query: 449 SKIMTPRSFPEIGRRFGDR 467 +K T +S P+IGR FG R Sbjct: 127 AKKFTQKSLPDIGRXFGGR 145 >gi|331265608|ref|YP_004325238.1| chromosomal replication initiation protein [Streptococcus oralis Uo5] gi|326682280|emb|CBY99897.1| chromosomal replication initiation protein [Streptococcus oralis Uo5] Length = 167 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 59/169 (34%), Positives = 92/169 (54%), Gaps = 15/169 (8%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD+++ F FIE N AL +++ V + G ++ NPL+I+ G GKTHLLQAI Sbjct: 7 LDNKYQFENFIEKDGN--ALAKKEALEVVKNLG---LKYNPLYIYGQSGSGKTHLLQAIG 61 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--L 275 N ++ P RV Y++A+ + +N K DLL++DD+Q L K + Sbjct: 62 NKVLENNPEKRVKYISAKDLL--------ENELEIQKVRSEKFDLLIVDDIQILGEKDDM 113 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 IQ +F +L NS D KQ+V + D P +LE+L+ + R + G++ L Sbjct: 114 IQEKFFNLFNSQHDMNKQMVFSGDSEPDQLENLNFHLIVRFKWGMTACL 162 >gi|241608050|ref|XP_002405928.1| replication initiator DnaA, putative [Ixodes scapularis] gi|215500706|gb|EEC10200.1| replication initiator DnaA, putative [Ixodes scapularis] Length = 129 Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/112 (41%), Positives = 74/112 (66%), Gaps = 3/112 (2%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S LD RF F F+ G+ N +A AA+++AE S G + NPLF++ VGLGKTHL+ A Sbjct: 21 STLDVRFTFDNFVVGAPNELAYAAARAVAE--SSGAVS-ESNPLFLYGGVGLGKTHLMHA 77 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 I + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD Sbjct: 78 IGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDD 129 >gi|218662589|ref|ZP_03518519.1| chromosomal replication initiation protein [Rhizobium etli IE4771] Length = 107 Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 40/61 (65%), Positives = 47/61 (77%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+ +F VS+RLK QVGPDVYASWF RLK HSV ++V LSVPT FLK+WI NRYLE Sbjct: 34 EMKQSILFERVSARLKAQVGPDVYASWFARLKLHSVSKSVVRLSVPTTFLKSWINNRYLE 93 Query: 92 T 92 + Sbjct: 94 S 94 >gi|71894026|ref|YP_278134.1| chromosomal replication initiator protein [Mycoplasma synoviae 53] gi|71850814|gb|AAZ43423.1| chromosomal replication initiator protein [Mycoplasma synoviae 53] Length = 456 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 91/336 (27%), Positives = 156/336 (46%), Gaps = 29/336 (8%) Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + + F F + + N +AL + +S T N F+ G GK+HLL AIAN Sbjct: 119 NKNYTFDNFFKSTFNELALEVLK-----NSLNETGEFNNIYFLCGKSGSGKSHLLSAIAN 173 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN---LKDSLRNIDLLLIDDMQ-FLQGK 274 + ++ N VY+ F + + +N +L L + N D++L DD + +GK Sbjct: 174 EA--KKQNKSCVYIQPALFSNKITQVLFENNSLTKQELNNFFVNADVILFDDFDDYGEGK 231 Query: 275 L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVSVPLGLHDYEM 331 ++ +++ + ++ K + A+ +L+SL D ++ +RL G+ V + Sbjct: 232 KKGTKNFILNIIENRINLNKLTIIASKTEYKKLKSLFDEKLFNRLGSGIKVSIESPKLSE 291 Query: 332 RFSILKNRLAISQKEDPKLN--INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL- 388 R S L Q +PKL ++E+ + + + S L N L R F Sbjct: 292 RKSFL-------QFLNPKLFEVLDEQSIEFILFNTSNSNWNLIQIVNNLKIRMKFLEGFQ 344 Query: 389 -TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 E LL V T E ++ I+ I V+K + IS+ ++ S R +V R + +Y Sbjct: 345 NKVEFIKSLLDQDVKTKE--EINIDLIISKVSKFFGISKKEIKSKSRKLSVSWARHICVY 402 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV-EKM 482 L K + +S EIGR F + DH++V++ +RKV EKM Sbjct: 403 LDKKLLNKSLNEIGRDF-NMDHSSVIYIIRKVNEKM 437 >gi|295094324|emb|CBK83415.1| ATPase involved in DNA replication initiation [Coprococcus sp. ART55/1] Length = 152 Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 5/142 (3%) Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 KSP + + S L + F FI G SN+ A A +A DS G + NPL Sbjct: 2 KSPPTYSEDYNDAIAKSNLRPDYTFENFIVGESNKHA--HATCLAVADSPGQD--KFNPL 57 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 F++ GLGKTHL+Q+IA+ ++ N++V+Y+ + F AI N ++ R Sbjct: 58 FLYGGSGLGKTHLMQSIAHYILQHNSNMKVLYVPSNKFTNEIIEAISKNKTEEFRNKYRT 117 Query: 260 IDLLLIDDMQFLQGKL-IQHEF 280 +D+LLIDD+Q+L GK Q EF Sbjct: 118 VDVLLIDDIQYLIGKASTQQEF 139 >gi|192291746|ref|YP_001992351.1| Chromosomal replication initiator DnaA domain [Rhodopseudomonas palustris TIE-1] gi|192285495|gb|ACF01876.1| Chromosomal replication initiator DnaA domain [Rhodopseudomonas palustris TIE-1] Length = 165 Score = 87.0 bits (214), Expect = 7e-15, Method: Composition-based stats. Identities = 42/92 (45%), Positives = 60/92 (65%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I IQ A +++++ ++ S RR V R RQVAMYL+K MTP S P+IGR+FG RDHT Sbjct: 70 IRAIQLACASYFDVAPIEMRSARRSVKVARARQVAMYLAKTMTPFSCPQIGRQFGGRDHT 129 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 TVLHAVR+V +++ D +V + R ++ Sbjct: 130 TVLHAVRRVTALMQQDAAFAADVGTISRWFAQ 161 >gi|59896649|gb|AAX11693.1| DnaA [Oenococcus oeni] gi|59896651|gb|AAX11694.1| DnaA [Oenococcus oeni] gi|59896653|gb|AAX11695.1| DnaA [Oenococcus oeni] Length = 210 Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 5/114 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F T++ G +N +A +AA +++E Y NPL I+ S GLGKTHL++AI Sbjct: 102 LNQNFTFDTWVIGDANELATSAAMAVSEQPGRQY-----NPLLIYGSSGLGKTHLMEAIG 156 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 N + QP+ V Y+T + FM + +AI + + N+DLLL+DD+Q L Sbjct: 157 NRLKELQPDAIVRYITTDDFMNDWVNAISKKTTTDFTSTYENVDLLLVDDIQML 210 >gi|59896637|gb|AAX11687.1| DnaA [Oenococcus oeni PSU-1] gi|59896641|gb|AAX11689.1| DnaA [Oenococcus oeni] gi|59896645|gb|AAX11691.1| DnaA [Oenococcus oeni] gi|59896647|gb|AAX11692.1| DnaA [Oenococcus oeni] Length = 210 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 5/114 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F T++ G +N +A +AA +++E Y NPL I+ S GLGKTHL++AI Sbjct: 102 LNQNFTFDTWVIGDANELATSAAMAVSEQPGRQY-----NPLLIYGSSGLGKTHLMEAIG 156 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 N + QP+ V Y+T + FM + +AI + + N+DLLL+DD+Q L Sbjct: 157 NRLKELQPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQML 210 >gi|59896639|gb|AAX11688.1| DnaA [Oenococcus oeni] gi|59896643|gb|AAX11690.1| DnaA [Oenococcus oeni] Length = 210 Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 44/114 (38%), Positives = 67/114 (58%), Gaps = 5/114 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F T++ G +N +A +AA +++E Y NPL I+ S GLGKTHL++AI Sbjct: 102 LNQNFTFDTWVIGDANELATSAAMAVSEQPGRQY-----NPLLIYGSSGLGKTHLMEAIG 156 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 N + QP+ V Y+T + FM + +AI + + N+DLLL+DD+Q L Sbjct: 157 NRLKELQPDAIVRYITTDDFMNDWVNAISKKTTADFTSNYENVDLLLVDDIQML 210 >gi|213418771|ref|ZP_03351837.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 182 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 20/179 (11%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI--LVRSVALPSVEKTASSPS 127 N + L P F+ W++++YL I L + G + L V V +T +P Sbjct: 13 NTLALYAPNRFVLDWVRDKYLNNINGLL----NTFCGADAPQLRFEVGTKPVTQTLKTPV 68 Query: 128 ITKLSPINTNISKSPIIL-----GKQTIS----PVFGSPLDSRFVFSTFIEGSSNRVALT 178 ++P T ++ + G + P + S ++ + F F+EG SN++A Sbjct: 69 HNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARA 128 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F Sbjct: 129 AARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERF 182 >gi|323575416|dbj|BAJ78236.1| replication initiation protein [Spiroplasma sp. Ozg] Length = 158 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 6/156 (3%) Query: 210 THLLQAIANASIKRQPNLR-VVYLTAEYFMWRFASAIRDNCA--LNLKDSLRNIDLLLID 266 THLL AI N + + N + V+YL++E F I+ N K+S D+LL+D Sbjct: 1 THLLHAIENEILTKYNNQKKVLYLSSEEFGRMVPEIIKQNVNDIEKFKNSFNQYDVLLVD 60 Query: 267 DMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL + +E F H+ NS ++ KQ+V +D+ P +L + R SR Q G+SV + Sbjct: 61 DIQFLANRSKTNEIFFHIFNSFVNKQKQIVITSDKHPDDLYGFEERNVSRFQSGLSVGID 120 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 D+E ILK ++ S DP + EE L +A Sbjct: 121 SPDFETSLIILKEKIK-SLNYDPSI-FTEESLSFIA 154 >gi|94501620|ref|ZP_01308137.1| chromosomal replication initiation protein [Oceanobacter sp. RED65] gi|94426303|gb|EAT11294.1| chromosomal replication initiation protein [Oceanobacter sp. RED65] Length = 216 Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 43/210 (20%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 L++++ P + +W + L +V ++ P F+K W+K+++L I L +E + Sbjct: 17 LQDELPPQQFNTWIRPLTVDETDSGLV-ITAPNRFVKDWVKDKFLNRIQSLLEE----LN 71 Query: 106 GVEILV-----------RSVALPSVE--------KTASS-----PS-ITKLSPINTNISK 140 G ++L S PS + K ASS PS I + S + ++ Sbjct: 72 GGQVLPFQLDIHAKGSQPSFVAPSAQPVKPDESVKAASSSVKATPSAIKRSSDTDIAVAS 131 Query: 141 SPIILGKQTISPV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 S ++ K+T V S L+ RF F TF+EG SN++A AAQ +++ Y Sbjct: 132 SSKVVKKETERKVQVEGSIQHQSSLNKRFTFDTFVEGKSNQLAHAAAQQVSQNAGGSY-- 189 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKR 223 NPLFI+ VGLGKTHL+ A+ N IKR Sbjct: 190 ---NPLFIYGGVGLGKTHLMHAVGN-HIKR 215 >gi|270668822|ref|ZP_06222556.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae HK1212] gi|270316646|gb|EFA28449.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae HK1212] Length = 148 Score = 83.2 bits (204), Expect = 9e-14, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 5/130 (3%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFVFSTFIEGSSNRVALT 178 E +P + + +P T ++S + ++ + V F S L+++ +F F+EG SN++A Sbjct: 17 EGVKPAPKVVENAPSGTPKTESAVDFQAESSASVKFESHLNTKHLFDNFVEGKSNQLARA 76 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 Q +A+ NP F++ GLGKTHLL AI N + +PN RV+Y+ A FM Sbjct: 77 VGQKLAQAPGEPSA----NPFFLYGGTGLGKTHLLHAIGNGILADKPNARVLYIHANNFM 132 Query: 239 WRFASAIRDN 248 A+RDN Sbjct: 133 QHMVKAVRDN 142 >gi|225011345|ref|ZP_03701798.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium MS024-3C] gi|225004507|gb|EEG42476.1| Chromosomal replication initiator DnaA [Flavobacteria bacterium MS024-3C] Length = 239 Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/233 (24%), Positives = 109/233 (46%), Gaps = 21/233 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +I+ S +K+ + P + +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MSTDANAIWNECLSFIKDNIQPQAFKTWFEPIKPVKLADNSLSVQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPI---NT 136 + + + + ++R + +PS ++ +P + PI N Sbjct: 61 KLLKVALTKSLGEGAKLVYIIRMENTYGNREPFTEKIPSSNRSYHAPQEIDV-PIKSKNP 119 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + +I G + I S L+ + F F+EG SNR+A +A ++A + G T+ Sbjct: 120 ELKNPFVIPGIRNIK--IESQLNPNYSFDNFLEGDSNRLARSAGMAVA--NKPGGTS--F 173 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 NPL I VGLGKTHL AI + P V+Y++AE F ++ +++ N Sbjct: 174 NPLLIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNT 226 >gi|307709854|ref|ZP_07646303.1| chromosomal replication initiator protein dnaA [Streptococcus mitis SK564] gi|307619403|gb|EFN98530.1| chromosomal replication initiator protein dnaA [Streptococcus mitis SK564] Length = 166 Score = 82.4 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 53/169 (31%), Positives = 90/169 (53%), Gaps = 15/169 (8%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD+++ F F+E N AL +++ V + G ++ +P +I+ G GKTHLL AI Sbjct: 6 LDNKYQFENFVEKDGN--ALAKKEALEVVKNLG---LKYSPFYIYGESGSGKTHLLLAIG 60 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK--L 275 N ++ P RV Y++AE + +N K +DLLL+DD+Q L+ K + Sbjct: 61 NKVLENNPEKRVKYISAENLL--------ENELEIQKVRGEELDLLLVDDIQVLEEKDDM 112 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 IQ +F +L NS Q+V + + P +L+++ R+ R + G++ L Sbjct: 113 IQEKFFNLFNSFFGRKTQIVLSGNSEPDQLKNVQSRLIVRFKWGMTACL 161 >gi|295112036|emb|CBL28786.1| ATPase involved in DNA replication initiation [Synergistetes bacterium SGP1] Length = 156 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 90/148 (60%), Gaps = 1/148 (0%) Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKM 409 ++ +EV+ +A+ + ++ R+L+GA N+++ + +T E + E L ++ + Sbjct: 6 DLPDEVVHFLAQHIPSNIRDLEGALNRVIMSSELYGEPVTIERSSEWLKDVLRMDVKAPV 65 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 +EDIQ +VA+++++S +L S++R + RQ+AM+L MT S I F +DH Sbjct: 66 TVEDIQSVVAEYFSMSPEELTSSKRTAELAMARQIAMFLCCEMTETSLLRIAHAFRKKDH 125 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLK 497 TTV+HA +K+ ++++TD +++ V+ LK Sbjct: 126 TTVIHARKKISELVKTDQEVRRAVDNLK 153 >gi|294668100|ref|ZP_06733207.1| ribosomal subunit interface protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309808|gb|EFE51051.1| ribosomal subunit interface protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 172 Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 77/137 (56%), Gaps = 6/137 (4%) Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 +A R N K + DLL+IDD+QF++GK EF +L N KQ++ D Sbjct: 2 NAFRTNNYDTFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHTEKKQLILTCDVL 61 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P+++E +D R++SR G+++ L ++EMR +IL+ + E + + E+ +A Sbjct: 62 PAKIEDMDDRLKSRFSWGLTLELEPPEFEMRVAILQKK-----AESAGVTLREDAAFFIA 116 Query: 362 RTVTTSGRELDGAFNQL 378 + + ++ REL+GAF ++ Sbjct: 117 KHIRSNVRELEGAFKRV 133 >gi|83309551|ref|YP_419815.1| hypothetical protein amb0452 [Magnetospirillum magneticum AMB-1] gi|82944392|dbj|BAE49256.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 165 Score = 80.5 bits (197), Expect = 6e-13, Method: Composition-based stats. Identities = 40/93 (43%), Positives = 61/93 (65%), Gaps = 1/93 (1%) Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL-SKIMTPRSFPEIGRRF 464 T ++ I +Q VAK + I + S++R + + RPRQVAM++ ++IM S P+IGR F Sbjct: 3 TPRLSIAFVQHQVAKAFGIDPRMMTSSQRAKKLARPRQVAMWIVARIMPSLSMPQIGRAF 62 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 G+RDHTTV+H VRK+E+M D + V+ L+ Sbjct: 63 GNRDHTTVIHGVRKIEEMRGNDPAFAELVDGLR 95 >gi|18129329|emb|CAC83488.1| DnaA protein [Wolbachia endosymbiont of Dirofilaria repens] Length = 136 Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 84/142 (59%), Gaps = 6/142 (4%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + +++L Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINKTTFELRLGILQAKV-----EQMNIYVPDDILEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +AR + ++ REL+GA N++ +T E A E L+ L+ + K++ I +IQ+ +A Sbjct: 56 LARNIKSNIRELEGALNKVAHTSLIGRSMTVESASETLADLLRSNH-KQITIAEIQKKIA 114 Query: 420 KHYNISRNDLLSNRRVRTVVRP 441 + +NI D+ SNRR+R +VRP Sbjct: 115 EFFNIKVADMHSNRRLRGLVRP 136 >gi|33322837|gb|AAQ07154.1|AF496464_1 chromosomal replication initiator protein [Lactobacillus delbrueckii subsp. lactis] Length = 109 Score = 79.3 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 1/85 (1%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI VGLGKTHL+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ Sbjct: 25 NPLFIFGGVGLGKTHLMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREK 84 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEF 280 R DLLL+DD+QF K IQ EF Sbjct: 85 YRTADLLLVDDIQFFAKKEGIQEEF 109 >gi|68171135|ref|ZP_00544544.1| chromosomal replication initiator protein DnaA [Ehrlichia chaffeensis str. Sapulpa] gi|67999460|gb|EAM86100.1| chromosomal replication initiator protein DnaA [Ehrlichia chaffeensis str. Sapulpa] Length = 59 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 34/55 (61%), Positives = 46/55 (83%) Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + S RR+RT+VRPRQVAMYLSK +T +S PEIG+ FG R H TV+HAV+++EK++ Sbjct: 1 MYSTRRLRTLVRPRQVAMYLSKKLTQKSLPEIGKSFGGRAHATVIHAVKQIEKLI 55 >gi|72384659|gb|AAZ67621.1| chromosomal replication initiator protein putative [Haemophilus parasuis 29755] Length = 204 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/179 (29%), Positives = 84/179 (46%), Gaps = 21/179 (11%) Query: 71 IVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 I+ +S+P N +W+ RY E + + + + G E+ + S + Sbjct: 41 IILVSLPFN--ASWLNQRYSEIMQAIIYD----VIGYEVKPHFI---------SEDELAS 85 Query: 131 LSPINTNISKSPIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 + +NT + P I +G + F TF+ G NR A+ ++AE + Sbjct: 86 YNNVNTQEVQEPQIQNSSIDDKTWGKEQFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAE 145 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 Y NPLFI+ VGLGKTHL+ AI + + +PN +V+Y ++E F F +IRDN Sbjct: 146 AY-----NPLFIYGGVGLGKTHLMHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDN 199 >gi|81361324|gb|ABB71500.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361328|gb|ABB71502.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361330|gb|ABB71503.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361332|gb|ABB71504.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361334|gb|ABB71505.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361336|gb|ABB71506.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361338|gb|ABB71507.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361340|gb|ABB71508.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361342|gb|ABB71509.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361344|gb|ABB71510.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361346|gb|ABB71511.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361348|gb|ABB71512.1| chromosomal replication initiator protein [Wolbachia pipientis] Length = 134 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/140 (32%), Positives = 80/140 (57%), Gaps = 6/140 (4%) Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA Sbjct: 1 LGWGLVADINETTFELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGAL 55 Query: 376 NQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 N++ +T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+ Sbjct: 56 NKVTHTSLIGRSMTVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRL 114 Query: 436 RTVVRPRQVAMYLSKIMTPR 455 R++ RPRQ+AMY +K T + Sbjct: 115 RSLARPRQIAMYFAKKFTQK 134 >gi|7476091|pir||T10001 replication initiation protein dnaA - Mycobacterium leprae (fragment) gi|1262352|emb|CAA94708.1| DnaA [Mycobacterium leprae] Length = 198 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 102/180 (56%), Gaps = 13/180 (7%) Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L +L+ R+R+R + G+ + + E R +IL+ + +Q E +L + +VL +A + Sbjct: 1 QLATLEDRLRTRFEWGLITDVQPPELETRIAILRKK---AQME--RLAVPGDVLELIASS 55 Query: 364 VTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 + + REL+GA L+ +FA + + +A+ +L L+ T ++ I A Sbjct: 56 IERNIRELEGA---LIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMTATA 112 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 113 EYFDTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKI 171 >gi|213401064|gb|ACJ47180.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Coptotermes acinaciformis] Length = 135 Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 82/141 (58%), Gaps = 6/141 (4%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + ++VL Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKV-----EQMSMYVPDDVLEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +AR + ++ REL+GA N++ +T E A E L+ L+ + K + I +IQR +A Sbjct: 56 LARNIKSNIRELEGALNKVAHTSLIGRSMTVESASETLADLLRSNH-KSITIAEIQRKIA 114 Query: 420 KHYNISRNDLLSNRRVRTVVR 440 + +NI D+ SNRR+R +VR Sbjct: 115 EFFNIKVADMHSNRRLRGLVR 135 >gi|81361326|gb|ABB71501.1| chromosomal replication initiator protein [Wolbachia pipientis] Length = 134 Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 6/137 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 4 GLVADINETTFELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKV 58 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ Sbjct: 59 THTSLIGRSMTVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSL 117 Query: 439 VRPRQVAMYLSKIMTPR 455 RPRQ+AMY +K T + Sbjct: 118 ARPRQIAMYFAKKFTQK 134 >gi|261883912|ref|ZP_06007951.1| chromosomal replication initiation protein [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 169 Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 35/81 (43%), Positives = 56/81 (69%), Gaps = 3/81 (3%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRI 104 WI N Y E +T+L+QEE+ +I Sbjct: 107 WINNHYSELLTELWQEENPQI 127 >gi|81361350|gb|ABB71513.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361352|gb|ABB71514.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|81361354|gb|ABB71515.1| chromosomal replication initiator protein [Wolbachia pipientis] Length = 134 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 80/140 (57%), Gaps = 6/140 (4%) Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA Sbjct: 1 LGWGLVADINETTFELRLGILQAKV-----ERMNMYVPKDVLEFLARNIKSNIRELEGAL 55 Query: 376 NQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 N++ +T E A E L L+ + + + IE+IQ+ +A+ +NI D+ SNRR+ Sbjct: 56 NKVAHTSLIGRSMTVESASETLIDLLRSNH-RSITIEEIQKKIAEFFNIKIADMQSNRRL 114 Query: 436 RTVVRPRQVAMYLSKIMTPR 455 R++ RPRQ+AMY +K T + Sbjct: 115 RSLARPRQIAMYFAKKFTQK 134 >gi|309799269|ref|ZP_07693517.1| chromosomal replication initiator protein DnaA [Streptococcus infantis SK1302] gi|308117114|gb|EFO54542.1| chromosomal replication initiator protein DnaA [Streptococcus infantis SK1302] Length = 207 Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 5/104 (4%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F F++G+ N A +AA +++E Y NPLFI+ GLGKTH Sbjct: 107 PYSETGLKEKYTFDNFVQGNGNVWAKSAALAVSEDPGLTY-----NPLFIYGGPGLGKTH 161 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 LL A+ N +K+ PN RV Y+ AE F+ F +R N NLK+ Sbjct: 162 LLNALGNEILKKSPNARVKYIPAESFINEFLEHLRLNDMENLKN 205 >gi|289811638|ref|ZP_06542267.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 125 Score = 77.0 bits (188), Expect = 7e-12, Method: Composition-based stats. Identities = 36/94 (38%), Positives = 56/94 (59%), Gaps = 5/94 (5%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTH Sbjct: 35 PTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTH 89 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 LL A+ N + R+PN +VVY+ +E F+ A+ Sbjct: 90 LLHAVGNGIMARKPNAKVVYMHSERFVQDMVKAL 123 >gi|154247623|ref|YP_001418581.1| chromosomal replication initiator DnaA domain-containing protein [Xanthobacter autotrophicus Py2] gi|154161708|gb|ABS68924.1| Chromosomal replication initiator DnaA domain [Xanthobacter autotrophicus Py2] Length = 195 Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 36/80 (45%), Positives = 54/80 (67%) Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 V + Y I + +LL++RR+++ + RQVAMYLS+ +T +S P IG G RDHTT+LH V Sbjct: 102 VCEFYGIPKVELLAHRRLKSFAKARQVAMYLSRELTTKSLPVIGAAIGGRDHTTILHGVG 161 Query: 478 KVEKMLETDITLKKEVELLK 497 K+ +ET+ L EVE ++ Sbjct: 162 KISAEIETNARLASEVETIR 181 >gi|270701248|ref|ZP_06223060.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae HK1212] gi|270315842|gb|EFA27945.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae HK1212] Length = 141 Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 84/146 (57%), Gaps = 7/146 (4%) Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 E ++ R++SR G++ + D E R +IL + + E+ +N+ EEV +A+ + Sbjct: 1 EKIEERLKSRFGWGLTTAIEPPDLETRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLR 55 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 T+ REL+GA N++ F + + + L ++ E + + IE+IQ++VA++Y I Sbjct: 56 TNVRELEGALNRVKAMQDFKGGDIDIDFVRDTLKDILALQE-RLVTIENIQKVVAEYYRI 114 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSK 450 +DL S R R+V RPRQ+AM L+K Sbjct: 115 KVSDLKSKSRARSVTRPRQIAMALAK 140 >gi|301166665|emb|CBW26241.1| putative chromosomal replication initiator protein DnaA [Bacteriovorax marinus SJ] Length = 392 Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 87/349 (24%), Positives = 152/349 (43%), Gaps = 30/349 (8%) Query: 154 FGSPL--DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 F P+ D VF FI G SN A +S + Y + +I + GLGK+H Sbjct: 67 FSLPINVDRNKVFKNFICGESNSRAYKVMESTLNSKNIDYQII-----YICSLSGLGKSH 121 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A ANA ++ ++ Y + F++ F + + ++L +I + +DD+ + Sbjct: 122 LLYATANALFEKTAK-KICYFHGKEFIYNFDAQV---------ENLDSIAAVFVDDLDEI 171 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 + +Q F + L S Q+ A P ++ + + +R+ G + + D + Sbjct: 172 TYDIDLQDRFSRNFDLLKRSGVQIFLAGSILPKHMKMANAKYANRVGGALVEKINKIDRD 231 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILT 389 + IL N +S + +L+ + L+ G L+ A +L + +F+ + Sbjct: 232 LASKILDN---LSTIHNYQLSPDVSDLLVDCFHYHVYG--LESALLKLKSYSETFSSNVD 286 Query: 390 AEIADELLSHLVNTGET--KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +IA L L G K + + I V + Y + DL S R + V R V MY Sbjct: 287 IKIA---LKELKILGPVLDKNINSKKIICRVCEFYKVDVEDLFSKNRKKEVSFARHVCMY 343 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 + K S I R F +RDHT+VL+ V KV ++ + +K++ L Sbjct: 344 ILKDRNGLSLSRIARLF-NRDHTSVLYGVNKVMAEIQNNKKFRKDIHEL 391 >gi|18129333|emb|CAC83490.1| DnaA protein [Wolbachia endosymbiont of Brugia malayi] Length = 135 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 82/141 (58%), Gaps = 6/141 (4%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + ++VL Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKV-----EQMNMYVPQDVLEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +AR + ++ REL+GA N++ +T E A E L L+ + + + I +IQ+ +A Sbjct: 56 LARNIRSNIRELEGALNKVAHTSLIGRSMTVESASETLMDLLRSNH-RSITIAEIQKKIA 114 Query: 420 KHYNISRNDLLSNRRVRTVVR 440 + +NI D+ SNRR+R++VR Sbjct: 115 EFFNIKVTDMHSNRRLRSLVR 135 >gi|18129346|emb|CAC87659.1| DnaA protein [Wolbachia endosymbiont of Folsomia candida] Length = 135 Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 6/137 (4%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + ++VL Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKI-----EQMNMYVPKDVLEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +AR + ++ REL+GA N++ +T E A E L L+ + K + IE+IQ+ +A Sbjct: 56 LARNIKSNIRELEGALNKVAHTSLIGRSMTVESASETLMDLLRSNH-KSITIEEIQKKIA 114 Query: 420 KHYNISRNDLLSNRRVR 436 + +NI +D+ SNRR R Sbjct: 115 EFFNIKISDMQSNRRTR 131 >gi|291520347|emb|CBK75568.1| ATPase involved in DNA replication initiation [Butyrivibrio fibrisolvens 16/4] Length = 114 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 65/111 (58%) Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 EIA+ L + ++ ++++ + I +V++H+N++ + + S R V RPRQ+AMYL Sbjct: 2 EIAERELQNFISPNVSREITPQLIIEVVSEHFNLTVDQMASKNRSSNVARPRQIAMYLCN 61 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S IG G RDH+T++H K+ + +E D + VE +K+ I+ Sbjct: 62 TMTDSSLQAIGLLLGGRDHSTIIHGANKIGEEIEKDDNTRSLVETIKKKIN 112 >gi|118566876|gb|ABL01757.1| unknown [Salmonella enterica subsp. enterica serovar Typhi] Length = 134 Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 1/108 (0%) Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 VY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL Sbjct: 1 VYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALL 60 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 + +Q++ +DR P E+ ++ R++SR G++V + + E R +IL Sbjct: 61 EGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL 108 >gi|213401062|gb|ACJ47179.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Litomosoides sigmodontis] Length = 135 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 82/141 (58%), Gaps = 6/141 (4%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + ++++VL Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKV-----EQMNIYVSQDVLEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +A+ + ++ REL+GA N++ +T E A E L L+ + + + I +IQ+ +A Sbjct: 56 LAKNIKSNIRELEGALNKVAHTSLIGRSVTVESASETLIDLLRSNH-RSITIAEIQKKIA 114 Query: 420 KHYNISRNDLLSNRRVRTVVR 440 + +NI D+ SNRR+R +VR Sbjct: 115 EFFNIKVTDMHSNRRLRGLVR 135 >gi|18129335|emb|CAC83491.1| DnaA protein [Wolbachia endosymbiont of Wuchereria bancrofti] Length = 135 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 81/141 (57%), Gaps = 6/141 (4%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + ++VL Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKV-----EQMNMYVPQDVLEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +AR + ++ REL+GA N++ +T E A E L L+ + + + I +IQ+ +A Sbjct: 56 LARNIRSNIRELEGALNKVAHTSLIGRSMTVESASETLMDLLRSNH-RSITIAEIQKKIA 114 Query: 420 KHYNISRNDLLSNRRVRTVVR 440 + +NI D+ SNRR+R +VR Sbjct: 115 EFFNIKVTDMHSNRRLRGLVR 135 >gi|18129321|emb|CAC83485.1| DnaA protein [Wolbachia endosymbiont of Onchocerca gibsoni] gi|18129323|emb|CAC83486.1| DnaA protein [Wolbachia endosymbiont of Onchocerca gutturosa] Length = 133 Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/139 (31%), Positives = 81/139 (58%), Gaps = 6/139 (4%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + ++VL Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQIKV-----EQMNIYVPDDVLEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +A+ + ++ REL+GA N++V +T E A E L+ L+ + K + I +IQ+ +A Sbjct: 56 LAKNIKSNIRELEGALNKVVHTSLIGRSMTVESASETLADLLRSNH-KPITIAEIQKKIA 114 Query: 420 KHYNISRNDLLSNRRVRTV 438 + +NI D+ SNRR+R + Sbjct: 115 EFFNIKVADMHSNRRLRAL 133 >gi|23006927|ref|ZP_00049020.1| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 57 Score = 72.8 bits (177), Expect = 1e-10, Method: Composition-based stats. Identities = 33/49 (67%), Positives = 38/49 (77%) Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P S PEIGRRFG RDHTTVLHAVRK+EK + D L EVELLKR++ + Sbjct: 9 PASLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDAVLGDEVELLKRMLQD 57 >gi|332198658|gb|EGJ12741.1| bacterial dnaA helix-turn-helix domain protein [Streptococcus pneumoniae GA41317] Length = 73 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 32/70 (45%), Positives = 51/70 (72%) Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 +RR++ +V RQVAMYLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ Sbjct: 3 GSRRLQNIVLARQVAMYLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLR 62 Query: 491 KEVELLKRLI 500 E+E +K+ I Sbjct: 63 LEIESIKKKI 72 >gi|27544716|dbj|BAC55053.1| DnaA [Mycobacterium parafortuitum] Length = 179 Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/178 (32%), Positives = 85/178 (47%), Gaps = 26/178 (14%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTAS-SPSITKLS 132 LSVPT F++ I+ E I + Q VE+ VR +A P+ E SP T ++ Sbjct: 10 LSVPTPFVQNEIERHLREPIVSALSRQLG--QRVELGVR-IADPATEDIGEPSPDPTPVA 66 Query: 133 PINTNISKSPIILGKQTIS----PVFGS-------------PLDSRFVFSTFIEGSSNRV 175 P+ ++ L + + P + + L+ R+ F TF+ G+SNR Sbjct: 67 PVESDDDDVDDDLAARASAEESWPTYYNRARNLTEDDSVSINLNRRYTFETFVIGASNRF 126 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 A A+ +IAE + Y NPLFI GLGKTHLL A N + + P +RV Y++ Sbjct: 127 AHAASLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVS 179 >gi|253699565|ref|YP_003020754.1| Chromosomal replication initiator DnaA [Geobacter sp. M21] gi|251774415|gb|ACT16996.1| Chromosomal replication initiator DnaA [Geobacter sp. M21] Length = 234 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/220 (25%), Positives = 100/220 (45%), Gaps = 26/220 (11%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F P+ RF F F+ N+ A A+ + E + N L+I+ G GKTHL Sbjct: 4 IFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDSTE-------NLLYIYGPEGSGKTHL 56 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWR-----FASAIRDNCALNLKDSLRNIDLLLIDD 267 L A++N+ + +YF +R + +++ L + ++ L++DD Sbjct: 57 LTALSNS------------IDGKYFSFRDAGSLYGASVGSEDPSRLAEHFQDAAALVLDD 104 Query: 268 MQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + L + ++ E L N+ S +++ + PP EL LD + SRL G+ + + Sbjct: 105 LHLLPNLQEVRVELWELFNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDV 164 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 D E R ILK Q P ++ +E+L+ V R + + Sbjct: 165 SDDESRRMILKKLAEDRQMALPD-DVIDEMLLRVRRDIPS 203 >gi|197119682|ref|YP_002140109.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem] gi|197089042|gb|ACH40313.1| DnaA regulatory inactivator Hda [Geobacter bemidjiensis Bem] Length = 234 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 26/220 (11%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F P+ RF F F+ N+ A A+ + E + N L+I+ G GKTHL Sbjct: 4 IFDFPVVPRFGFENFVVCGGNKTAYQFAKKLVEDPTE-------NLLYIYGPEGSGKTHL 56 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWR-----FASAIRDNCALNLKDSLRNIDLLLIDD 267 L A++N+ + YF +R + S++ L + + L++DD Sbjct: 57 LTALSNS------------IDGRYFSFRDAGSLYGSSVGSEGPSRLAEHFQGAAALVLDD 104 Query: 268 MQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + L ++ E L N+ S +++ + PP EL LD + SRL G+ + + Sbjct: 105 LHLLPNLHEVRVELWELFNAFYSSGRKIAISGLMPPKELPHLDGHLTSRLLWGLVARMDV 164 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 D E R ILK Q P ++ +E+L+ V R + + Sbjct: 165 SDDESRRMILKKLAEDRQMALPD-DVIDEMLLRVRRDIPS 203 >gi|18129344|emb|CAC87658.1| DnaA protein [Wolbachia endosymbiont of Kalotermes flavicollis] Length = 129 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/135 (31%), Positives = 78/135 (57%), Gaps = 6/135 (4%) Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + ++VL +A Sbjct: 1 PSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKV-----EQMSMYVPDDVLEFLA 55 Query: 362 RTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH 421 R + ++ REL+GA N++ +T E A E L+ L+ + K + I +IQ+ +A+ Sbjct: 56 RNIKSNIRELEGALNKVAHTSLIGRSMTVESASETLADLLRSNH-KSITIAEIQKKIAEF 114 Query: 422 YNISRNDLLSNRRVR 436 +NI D+ SNRR+R Sbjct: 115 FNIKVADMHSNRRLR 129 >gi|27544698|dbj|BAC55044.1| DnaA [Mycobacterium gastri] Length = 186 Score = 71.6 bits (174), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/88 (42%), Positives = 51/88 (57%), Gaps = 5/88 (5%) Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 G T++ G+ L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI Sbjct: 104 GTDTVAATGGTSLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGES 158 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLT 233 GLGKTHLL A N + + P +RV Y++ Sbjct: 159 GLGKTHLLHAAGNYTQRLFPGMRVKYVS 186 >gi|192291424|ref|YP_001992029.1| Chromosomal replication initiator DnaA domain [Rhodopseudomonas palustris TIE-1] gi|192285173|gb|ACF01554.1| Chromosomal replication initiator DnaA domain [Rhodopseudomonas palustris TIE-1] Length = 289 Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 1/99 (1%) Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR-SFPEIGRR 463 E + + +I +VA ++ + +L +RR T++ PR VAMYL P S P IG Sbjct: 70 EPRSLYAREIVSVVANYFGPTVGELRGSRRAATLIIPRHVAMYLVSDTCPHLSLPAIGSF 129 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTT+L+AVRKVEK+ + L + L+ I+E Sbjct: 130 FGGRDHTTILYAVRKVEKLQKDGGKLAAAIAELRAKIAE 168 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 1/91 (1%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH- 469 IE +QR+VA+ Y+++ +DL RR R V R VA+YL +++T I +FG R H Sbjct: 194 IERVQRVVARFYHLTVDDLTGKRRERHVRHARAVAIYLCRMLTDYCNSAISEKFGARRHY 253 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TV V V L L ++ L LI Sbjct: 254 ATVPSYVDAVSIQLGESSRLAADIRSLTDLI 284 >gi|213401060|gb|ACJ47178.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Armadillidium vulgare] Length = 134 Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 43/139 (30%), Positives = 79/139 (56%), Gaps = 6/139 (4%) Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R PS+L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + ++VL Sbjct: 1 RSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKV-----ERMNMYVPKDVLEF 55 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +AR + ++ REL+GA N++ +T E A E L L+ + + + E+IQ+ A Sbjct: 56 LARNIKSNIRELEGALNKVAHTSLIGRSMTVESASETLIDLLRSNH-RSITTEEIQKKTA 114 Query: 420 KHYNISRNDLLSNRRVRTV 438 + +NI D+ SNRR+R++ Sbjct: 115 EFFNIKVADMQSNRRLRSL 133 >gi|27544736|dbj|BAC55063.1| DnaA [Mycobacterium vaccae] Length = 176 Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/175 (32%), Positives = 85/175 (48%), Gaps = 23/175 (13%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK--- 130 LSVPT F++ I+ E I + + Q VE+ VR +A P + A + + T Sbjct: 10 LSVPTAFVQNEIERGLREPIIEALSRQLG--QRVELGVR-IATPPPDDEADTEAETPHDA 66 Query: 131 ---------LSPINTNISKSPIILGK-QTISPVFGSP--LDSRFVFSTFIEGSSNRVALT 178 L+ I + + P + Q+ +P + L+ R+ F TF+ GSSNR A Sbjct: 67 AEAEEVDDDLAAIESAEASWPTFFNRSQSPAPEAANSVTLNRRYTFETFVIGSSNRFAHA 126 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 A +I+E + Y NPLFI GLGKTHLL A N + + P +RV Y++ Sbjct: 127 ATLAISEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVS 176 >gi|27544726|dbj|BAC55058.1| DnaA [Mycobacterium szulgai] Length = 191 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 60/195 (30%), Positives = 84/195 (43%), Gaps = 32/195 (16%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE--HSRIQGVEILVRSV----ALPSV 119 +++ LSVP++F++ I+ IT H GV I ALP Sbjct: 2 TIVEGFALLSVPSSFVQNEIERHLRTPITDALSRRLGHEIQLGVRIAPPQSDDDNALPQD 61 Query: 120 EKTASSPSIT---KLSPINTNISKSPII----LGKQTISPVF--------------GSPL 158 A S + T SP + N S +G Q P + G+ L Sbjct: 62 STFAPSDTFTTTDAFSPPDENGSDKDADEADEVGGQPAWPTYFTERPSNNDSATAGGTSL 121 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + R+ F TF+ G+SNR A A +IAE + Y NPLFI GLGKTHLL A N Sbjct: 122 NRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGN 176 Query: 219 ASIKRQPNLRVVYLT 233 + + P +RV Y++ Sbjct: 177 YAQRLFPGMRVKYVS 191 >gi|18129325|emb|CAC83639.1| DnaA protein [Wolbachia endosymbiont of Onchocerca ochengi] Length = 131 Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/137 (31%), Positives = 80/137 (58%), Gaps = 6/137 (4%) Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L+ ++ RI+SRL G+ + +E+R IL+ ++ E + + ++VL +A+ Sbjct: 1 DLDGVEERIKSRLGWGLVADINETTFELRLGILQIKV-----EQMNIYVPDDVLEFLAKN 55 Query: 364 VTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 + ++ REL+GA N++V +T E A E L+ L+ + K + I +IQ+ +A+ +N Sbjct: 56 IKSNIRELEGALNKVVHTSLIGRSITVESASETLADLLRSNH-KPITIAEIQKKIAEFFN 114 Query: 424 ISRNDLLSNRRVRTVVR 440 I D+ SNRR+R +VR Sbjct: 115 IKVADMHSNRRLRALVR 131 >gi|148263480|ref|YP_001230186.1| chromosomal replication initiator, DnaA [Geobacter uraniireducens Rf4] gi|146396980|gb|ABQ25613.1| regulatory inactivation of DnaA Hda protein [Geobacter uraniireducens Rf4] Length = 241 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 67/238 (28%), Positives = 105/238 (44%), Gaps = 21/238 (8%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F P++ +F F F+ + N+ A A+ +AE D N L+++ S G GKTHL Sbjct: 4 IFDFPVNPKFGFDNFVVCAGNKTAYHFARQLAEGDG------TENLLYLYGSTGSGKTHL 57 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL----NLKDSLRNIDLLLIDDM 268 L A+AN SI R+ L + R N L + N LL+DD+ Sbjct: 58 LTAMAN-SICREAGLDAI---PSISFKNIDELYRGNYPAEEPSKLAERFNNAPALLVDDI 113 Query: 269 QFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 + I+ E L N + K++ PP EL LD + SRL G+ L + Sbjct: 114 HLIPDNDNIRVELWQLFNDFYTAGKKIAITGLNPPKELPHLDGHLTSRLLWGLVTKLDIS 173 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 + IL+ +LA ED ++ + E+V+ H+ + L A Q + RH+ A Sbjct: 174 GDDSLRMILQ-KLA----EDRQVALPEDVIAHLLVHIRRDIPSLLNALEQ-IRRHAIA 225 >gi|27544718|dbj|BAC55054.1| DnaA [Mycobacterium phlei] Length = 175 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI GLGKTHLL A Sbjct: 105 LNRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAG 159 Query: 218 NASIKRQPNLRVVYLT 233 N ++K P +RV Y++ Sbjct: 160 NYALKLFPGMRVKYVS 175 >gi|27544704|dbj|BAC55047.1| DnaA [Mycobacterium kansasii] Length = 192 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 5/85 (5%) Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T++ G+ L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI GLG Sbjct: 113 TVAATGGTSLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLG 167 Query: 209 KTHLLQAIANASIKRQPNLRVVYLT 233 KTHLL A N + + P +RV Y++ Sbjct: 168 KTHLLHAAGNYTQRLFPGMRVKYVS 192 >gi|33321975|gb|AAQ06706.1|AF496049_1 chromosomal replication initiator protein [Lactobacillus delbrueckii subsp. lactis] Length = 148 Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 52/152 (34%), Positives = 79/152 (51%), Gaps = 12/152 (7%) Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V +DR P+E+ L R+ SR G+ V + D E R +IL+ + E L Sbjct: 5 KQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLETRIAILRKK-----AESEGLE 59 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI----ADELLSHLVNTGETK 407 I+E L +VA V T+ REL+GA LV + A I +I A L+ L +++ Sbjct: 60 IDESTLDYVASQVDTNIRELEGA---LVKVQAQATIQKQDINIGLARSALADLKLVQKSR 116 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 ++I IQ +VA ++ S DL +RVR +V Sbjct: 117 GLQISKIQEVVANYFQTSVPDLKGKKRVRQIV 148 >gi|27544696|dbj|BAC55043.1| DnaA [Mycobacterium fortuitum subsp. fortuitum] Length = 188 Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 83/187 (44%), Gaps = 35/187 (18%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS-------- 125 LSVPT F++ I+ E I + Q VE+ VR +A P E SS Sbjct: 10 LSVPTPFVQNEIERHLREPIINALSRKLG--QRVELGVR-IATPPEESEDSSSDAGLSDD 66 Query: 126 --PSITKLSPI----NTNISKSPIILGKQTISPVFGSP-------------LDSRFVFST 166 P + +P + ++ +++ F SP L+ R+ F T Sbjct: 67 ERPDASAATPAADLDEIDDDRAAKASAEESWPTYFSSPQRDSTISDDNAVNLNRRYTFDT 126 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G+SNR A A +IAE + Y NPLFI GLGKTHLL A N + + P Sbjct: 127 FVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPG 181 Query: 227 LRVVYLT 233 +RV Y++ Sbjct: 182 MRVKYVS 188 >gi|302668625|ref|YP_003833073.1| chromosomal replication initiator protein DnaA2 [Butyrivibrio proteoclasticus B316] gi|302397589|gb|ADL36491.1| chromosomal replication initiator protein DnaA2 [Butyrivibrio proteoclasticus B316] Length = 281 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/161 (29%), Positives = 80/161 (49%), Gaps = 7/161 (4%) Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 ++ F F S N A AAQ I + Y NPL+I+ G GKTHLL+ I + Sbjct: 121 KYSFLNFRVSSGNYFAFQAAQLIIDPRKESY-----NPLYIYGDHGSGKTHLLKTIEDYI 175 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 + R Y+ AE F+ + + D R++D+LLIDD+ GK E Sbjct: 176 NHESDDKRAFYILAEKFINDVMDMKTNGNSNKFVDFYRSLDVLLIDDIDCFVGKSEASSE 235 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 ++++ +L+ KQ+V ++ + P +L ++ + SR++ G+ Sbjct: 236 LVNIIDVMLNDEKQLVFSSQKEPRKL-GIEEALISRIEKGL 275 >gi|27544734|dbj|BAC55062.1| DnaA [Mycobacterium ulcerans] Length = 188 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 5/79 (6%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI GLGKTHLL Sbjct: 115 GTSLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLH 169 Query: 215 AIANASIKRQPNLRVVYLT 233 A N + + P +RV Y++ Sbjct: 170 AAGNYAQRLFPGMRVKYVS 188 >gi|27544710|dbj|BAC55050.1| DnaA [Mycobacterium marinum] Length = 188 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 5/79 (6%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ R+ F TF+ G+SNR A A +IAE + Y NPLFI GLGKTHLL Sbjct: 115 GTSLNRRYTFDTFVIGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLH 169 Query: 215 AIANASIKRQPNLRVVYLT 233 A N + + P +RV Y++ Sbjct: 170 AAGNYAQRLFPGMRVKYVS 188 >gi|222055415|ref|YP_002537777.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32] gi|221564704|gb|ACM20676.1| Chromosomal replication initiator DnaA [Geobacter sp. FRC-32] Length = 241 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 26/224 (11%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F P++S++ F F+ + N+ A A+ +AE D N L+++ + G GKTHL Sbjct: 4 IFDFPVNSKYGFDNFVVCAGNKTAYHFARQLAEGDG------TENLLYLYGAKGSGKTHL 57 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-----LNLKDSLRNIDLLLIDD 267 L AIAN SI Q L + ++ I D L + ++ LLIDD Sbjct: 58 LTAIAN-SIGSQSGLAAL----PSISFKDIDKIYDGHYPAEELSKLAEQFKSSPALLIDD 112 Query: 268 MQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + + I+ E L N + K++ + PP EL +LD + SRL G+ L + Sbjct: 113 IHLIPDNDSIRVELWQLFNDFYTAGKKIAISGLYPPKELPNLDGHLTSRLLWGLVSKLDI 172 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEV----LMHVARTVTT 366 + IL+ +LA ED ++ + EEV L+H+ R + T Sbjct: 173 SGDDSLRMILQ-KLA----EDRQIVVPEEVIAYLLVHLHRDIPT 211 >gi|27544724|dbj|BAC55057.1| DnaA [Mycobacterium smegmatis] Length = 185 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 34/185 (18%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP 133 LSVPT F++ I+ E I + Q VE+ VR +A P+ E +P SP Sbjct: 10 LSVPTPFVQNEIERHLREPIVTALSRKLG--QRVELGVR-IATPTDEPE-DAPDSFADSP 65 Query: 134 INTNISKSPI------------ILGKQTISPVFGSP-------------LDSRFVFSTFI 168 ++ P + +++ F P L+ R+ F TF+ Sbjct: 66 APASVPAGPADADEIDDDRDARVNAQESWPKYFSRPEPDTSSDDSNAVNLNRRYTFDTFV 125 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G+SNR A A +IAE + Y NPLFI GLGKTHLL A N + + P +R Sbjct: 126 IGASNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMR 180 Query: 229 VVYLT 233 V Y++ Sbjct: 181 VKYVS 185 >gi|213423089|ref|ZP_03356107.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 63 Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 33/62 (53%), Positives = 43/62 (69%) Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R Sbjct: 1 RPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRT 60 Query: 500 IS 501 +S Sbjct: 61 LS 62 >gi|213401066|gb|ACJ47181.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Dipetalonema gracile] Length = 125 Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 6/130 (4%) Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 RI+SRL G+ + +E+R IL+ ++ E + + ++VL +AR + ++ RE Sbjct: 2 RIKSRLGWGLVADINETTFELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRE 56 Query: 371 LDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 L+GA N++ +T E A E L L+ + + + IE+IQ+ VA+ +NI D+ Sbjct: 57 LEGALNKVTHTSLIGRSMTVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQ 115 Query: 431 SNRRVRTVVR 440 SNRR+R++ R Sbjct: 116 SNRRLRSLAR 125 >gi|164456442|dbj|BAF97724.1| replication initiation protein [Corynebacterium macginleyi] gi|164456446|dbj|BAF97726.1| replication initiation protein [Corynebacterium macginleyi] gi|164456450|dbj|BAF97728.1| replication initiation protein [Corynebacterium macginleyi] gi|164456452|dbj|BAF97729.1| replication initiation protein [Corynebacterium macginleyi] gi|164456460|dbj|BAF97733.1| replication initiation protein [Corynebacterium macginleyi] gi|164456464|dbj|BAF97735.1| replication initiation protein [Corynebacterium macginleyi] Length = 159 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL + A Sbjct: 2 FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLV 401 E ++ VL +A +S REL+GA ++ S PI E+A+ L L Sbjct: 62 GTE-----VDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-NVEMAEIALRDLA 115 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +++ I + A++++I L + R V RQ+A Sbjct: 116 PDSANRQITAASIMEVTAEYFDIDVETLRGAGKKRAVAHARQLA 159 >gi|144900485|emb|CAM77349.1| Chain A, Crystal Structure Of Dnaa Domainiv Complexed With Dnaabox Dna [Magnetospirillum gryphiswaldense MSR-1] Length = 121 Score = 65.1 bits (157), Expect = 3e-08, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 48/76 (63%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 + D+ VA + +S +++ + R + +PR AMY ++++T S PE+GR FG R HT Sbjct: 23 VADVIATVAAEFGLSEREMMVHSRDHRLWKPRMAAMYYARLLTSCSLPELGRVFGGRSHT 82 Query: 471 TVLHAVRKVEKMLETD 486 TVL A R+ +M+++D Sbjct: 83 TVLRAFRRCREMIDSD 98 >gi|164456444|dbj|BAF97725.1| replication initiation protein [Corynebacterium macginleyi] gi|164456462|dbj|BAF97734.1| replication initiation protein [Corynebacterium macginleyi] gi|164456468|dbj|BAF97737.1| replication initiation protein [Corynebacterium macginleyi] gi|164456472|dbj|BAF97739.1| replication initiation protein [Corynebacterium macginleyi] Length = 159 Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL + A Sbjct: 2 FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLV 401 E ++ VL +A +S REL+GA ++ S PI E+A+ L L Sbjct: 62 GTE-----VDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-NVEMAEIALRDLA 115 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +++ I + A++++I L + R V RQ+A Sbjct: 116 PDSANQQITAASIMEVTAEYFDIDVETLRGAGKKRAVAHARQLA 159 >gi|219669020|ref|YP_002459455.1| replication initiation factor DnaA protein [Desulfitobacterium hafniense DCB-2] gi|219539280|gb|ACL21019.1| Chromosomal replication initiator DnaA domain protein [Desulfitobacterium hafniense DCB-2] Length = 329 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 66/300 (22%), Positives = 142/300 (47%), Gaps = 17/300 (5%) Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ G+GK+ LL + + ++Y+ A+ F+ +A A ++ + LR Sbjct: 29 LYGPEGVGKSTLL---VKCCQRLKEKKTILYIDAQDFVKNYAFAAQEGTLSQFRLRLRTP 85 Query: 261 DLLLIDDMQFLQGKLIQ-HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 +L++D ++ L+GK EF H +L +++ PS+L L ++ SRL+GG Sbjct: 86 GVLIMDHIEVLKGKTRSIEEFYHTYEALFQRNGRIICGFRGDPSQLGFLGEKLSSRLRGG 145 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + VP+ E + L+ Q K I E++++ + + E N + Sbjct: 146 LVVPILQPTPEDMLNYLR------QMAYGKFLIVEDLVLELMAEEAANFPEAQSLMNGFI 199 Query: 380 FRHSFAPILTAEIA-DELLSHLVNTGETKKMR--IEDIQRMVAKHYNISRNDLLSNRRVR 436 FA + + D LL +L + +R ++I + VA+ ++ + S R Sbjct: 200 ---QFANRTDSALDHDALLLYLQERRYQEGLRPSPQNIIQKVAELTGVAAAAIYSTTRTP 256 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 V + RQ+A+Y + ++ S+PEIG ++ H++++ + ++ ++ ++ + L++ +E L Sbjct: 257 EVRQARQLAIYGIRSLSRLSYPEIGASL-NKSHSSIMKSYQQFQEAVQKNPELREMLESL 315 >gi|164456454|dbj|BAF97730.1| replication initiation protein [Corynebacterium accolens] Length = 159 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 8/164 (4%) Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL + A Sbjct: 2 FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLV 401 E ++ VL +A +S REL+GA ++ S PI E+A+ L L Sbjct: 62 GTE-----VDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-NVEMAEIALRDLA 115 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +++ I + A++++I L + R V RQ+A Sbjct: 116 PDSADRQITAASIMEVTAEYFDIDVETLRGAGKKRAVAHARQLA 159 >gi|27544694|dbj|BAC55042.1| DnaA [Mycobacterium chelonae] Length = 175 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 5/76 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++R+ F +F+ G+SNR + AA +++E + Y NPLFI GLGKTHLL A Sbjct: 105 LNARYTFESFVIGASNRFSHAAAVAVSEAPARAY-----NPLFIWGESGLGKTHLLHAAG 159 Query: 218 NASIKRQPNLRVVYLT 233 N + + P +RV Y++ Sbjct: 160 NYAQRLFPGMRVKYVS 175 >gi|164456438|dbj|BAF97722.1| replication initiation protein [Corynebacterium macginleyi] gi|164456440|dbj|BAF97723.1| replication initiation protein [Corynebacterium macginleyi] gi|164456448|dbj|BAF97727.1| replication initiation protein [Corynebacterium macginleyi] gi|164456456|dbj|BAF97731.1| replication initiation protein [Corynebacterium macginleyi] gi|164456458|dbj|BAF97732.1| replication initiation protein [Corynebacterium macginleyi] gi|164456466|dbj|BAF97736.1| replication initiation protein [Corynebacterium macginleyi] gi|164456470|dbj|BAF97738.1| replication initiation protein [Corynebacterium macginleyi] Length = 159 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 47/164 (28%), Positives = 81/164 (49%), Gaps = 8/164 (4%) Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL + A Sbjct: 2 FNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAAD 61 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLV 401 E + VL +A +S REL+GA ++ S PI E+A+ L L Sbjct: 62 GTE-----VERSVLELIASRFESSIRELEGALIRVSAYSSLVNEPI-NVEMAEIALRDLA 115 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +++ I + A++++I L + R V RQ+A Sbjct: 116 PDSANRQITAASIMEVTAEYFDIDVETLRGAGKKRAVAHARQLA 159 >gi|27544686|dbj|BAC55038.1| DnaA [Mycobacterium abscessus] Length = 175 Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 31/76 (40%), Positives = 47/76 (61%), Gaps = 5/76 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++R+ F +F+ G+SNR + AA +++E + Y NPLFI GLGKTHLL A Sbjct: 105 LNARYTFESFVIGASNRFSHAAAVAVSEAPARAY-----NPLFIWGESGLGKTHLLHAAG 159 Query: 218 NASIKRQPNLRVVYLT 233 N + + P +RV Y++ Sbjct: 160 NYAQRLFPGMRVKYVS 175 >gi|268611321|ref|ZP_06145048.1| chromosomal replication initiator protein DnaA [Ruminococcus flavefaciens FD-1] Length = 338 Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 11/166 (6%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAE-VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 S++ F +F +NR A A+ AE DS PL I + GKTHLL A+ N Sbjct: 8 SKYTFDSFAVTDANRTAFEKAKLFAENADS--------KPLAIFGATATGKTHLLYAVKN 59 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAI-RDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 A + P L V++ T + + I A ++ D+LL+DD+Q L GK I Sbjct: 60 AIEQNSPELHVIFTTTADMVSTLTNIISSGGTAEQFREKYMQADVLLVDDIQALAGKEAI 119 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 Q+E + NS +S K+ + + + + D + G +V Sbjct: 120 QNELILIFNSFYESGKRFMMTSAQKEAGYGIQDRLVIREFWGDFAV 165 >gi|112789949|gb|ABI21618.1| Smu19A [uncultured organism] Length = 145 Score = 63.5 bits (153), Expect = 7e-08, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 4/134 (2%) Query: 369 RELDGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA ++ S P+ A +A +L L+ + I + A+++ ++ Sbjct: 6 RELEGALIRVTAFASLNRQPVDLA-LAQVVLRDLIGDAVANDLDAPTIMAVTAEYFTLTI 64 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE-KMLET 485 +DL + + + RQ+AMYL + +T + P IG+ FG RDHTTV+HA +K+ ++ E Sbjct: 65 DDLCGPMKTKHIASARQIAMYLCRELTDLTLPAIGKTFGGRDHTTVMHAQKKIRAELAER 124 Query: 486 DITLKKEVELLKRL 499 T ++ EL R+ Sbjct: 125 RQTYEQVQELTPRI 138 >gi|89274040|dbj|BAE80735.1| DnaA protein [Spiroplasma sp. Dhd] gi|172052696|dbj|BAC56124.2| DnaA protein [Spiroplasma sp. NSRO] gi|172052698|dbj|BAC56125.2| DnaA protein [Spiroplasma sp. NSRO-A] gi|183582236|dbj|BAG28287.1| DnaA protein [Spiroplasma sp. NSRO] Length = 157 Score = 63.5 bits (153), Expect = 8e-08, Method: Composition-based stats. Identities = 49/136 (36%), Positives = 69/136 (50%), Gaps = 6/136 (4%) Query: 210 THLLQAIANASIK-RQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLI 265 THLL AI N + + N RV YL A F + A I + K S D LLI Sbjct: 1 THLLHAIENKVNEIYKTNTRVKYLKANEF-GKIAMDILNQGHEIIEAFKTSYDIYDCLLI 59 Query: 266 DDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q L + +E F H+ NS ++ KQ+V +D+ P +L + RI SR G+S+ L Sbjct: 60 DDIQLLAKRNKTNELFFHIFNSYIEKNKQIVITSDKYPDDLGGFEARIISRFSYGLSIGL 119 Query: 325 GLHDYEMRFSILKNRL 340 D+E IL+ +L Sbjct: 120 DSPDFETALKILEQKL 135 >gi|78221967|ref|YP_383714.1| regulatory inactivation of DnaA Hda protein [Geobacter metallireducens GS-15] gi|78193222|gb|ABB30989.1| regulatory inactivation of DnaA Hda protein [Geobacter metallireducens GS-15] Length = 243 Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 18/227 (7%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 VF P++ ++ F+ S N A + + D G N L++H G GKTHL Sbjct: 4 VFDFPVNPKYSLDNFVICSGNETAYRFVRRL--TDDEGAE----NLLYLHGPSGSGKTHL 57 Query: 213 LQAI-----ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 L AI A A + P + + Y A A+ L + RN LL+DD Sbjct: 58 LMAIGAHFSARAGLSSVPCISFKDVDEVYGGEYPAEAVS-----KLAERFRNAPALLVDD 112 Query: 268 MQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + + + ++ E L N + + + PP EL ++D + SRL G+ + + Sbjct: 113 LHLIPDQQAVRVELWQLFNDFYQAGRPIAITGLYPPKELPTIDDHLISRLLWGLVARVDI 172 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 D + R I+K +LA ++ ++ + +L+HV R V + LD Sbjct: 173 SDDDSRRLIMK-KLADDRQIVLPADVIDYLLLHVRRDVPSLIEALDA 218 >gi|330902594|gb|EGH33609.1| chromosomal replication initiation protein [Pseudomonas syringae pv. japonica str. M301072PT] Length = 219 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 10/97 (10%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 + PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 128 NEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 187 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 AA +A+ HGY NPLF++ VGLGKTHL+ A Sbjct: 188 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHA 219 >gi|89894586|ref|YP_518073.1| hypothetical protein DSY1840 [Desulfitobacterium hafniense Y51] gi|89334034|dbj|BAE83629.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 329 Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/302 (21%), Positives = 141/302 (46%), Gaps = 21/302 (6%) Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ G+GK+ LL + + ++Y+ A+ F+ +A A ++ + LR Sbjct: 29 LYGPEGVGKSTLL---VKCCQRLKEKKTILYIDAQDFVKNYAFAAQEGTLSQFRLRLRTP 85 Query: 261 DLLLIDDMQFLQGKLIQ-HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 +L++D ++ L+GK EF H +L +++ PS+L L ++ SRL+GG Sbjct: 86 GVLIMDHIEVLKGKTRSIEEFYHTYEALFQRNGRIICGFRGDPSQLGFLGEKLSSRLRGG 145 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS---GRELDGAFN 376 + VP+ E + L+ Q K I E++++ + + + L F Sbjct: 146 LVVPILQPTPEDMLNYLR------QMAYGKFLIVEDLVLELMAEEAANFPKAQSLMNGFI 199 Query: 377 QLVFRHSFAPILTAEIADELLSHLVNTGETKKMR--IEDIQRMVAKHYNISRNDLLSNRR 434 Q R +A LL +L + +R ++I + VA+ ++ + S R Sbjct: 200 QFANRTD-----SALDHGALLLYLQERRYQEGLRPSPQNIIQKVAELTGVAAAAIYSTTR 254 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 V + RQ+A+Y + ++ S+PEIG ++ H++++ + ++ ++ ++ + L++ +E Sbjct: 255 TPEVRQARQLAIYGIRSLSRLSYPEIGASL-NKSHSSIMKSYQQFQQAVQKNPELREMLE 313 Query: 495 LL 496 L Sbjct: 314 SL 315 >gi|213422285|ref|ZP_03355351.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 82 Score = 61.2 bits (147), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%) Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R+ Sbjct: 1 KRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRL 60 Query: 313 RSRLQGGVSVPLGLHDYEMR 332 +SR G++V + + E R Sbjct: 61 KSRFGWGLTVAIEPPELETR 80 >gi|118580735|ref|YP_901985.1| chromosomal replication initiator, DnaA [Pelobacter propionicus DSM 2379] gi|118503445|gb|ABK99927.1| Chromosomal replication initiator, DnaA [Pelobacter propionicus DSM 2379] Length = 236 Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 63/230 (27%), Positives = 100/230 (43%), Gaps = 24/230 (10%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P+ S F +F+ N A+ A+ I + RL L++H G GKTHLL+AI Sbjct: 8 PVSSSCTFDSFVVCDGNAAAVRFARRITDESE----PERL--LYLHGPPGSGKTHLLRAI 61 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QGKL 275 A P+ A Y R + R +L D L++DD+Q L + Sbjct: 62 ALELAGGNPD------QAPYLSCRDVRSAR-----SLVDRFHGAQGLVVDDLQLLPDSQD 110 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 ++ L N ++ + VV A PP L LD + SRL G+ + D R I Sbjct: 111 LRAALWQLFNDFHEAGRAVVLAGLHPPRMLPHLDDHLVSRLLWGLVARVDASDDLSRRMI 170 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 LK +D ++ + ++V+ ++ T + EL G F + ++R S A Sbjct: 171 LKK-----IADDRQVRVPDDVVEYIMVTTSREVGELIG-FFETIYRFSLA 214 >gi|187250573|ref|YP_001875055.1| DNA replication initiation ATPase [Elusimicrobium minutum Pei191] gi|186970733|gb|ACC97718.1| ATPase involved in DNA replication initiation [Elusimicrobium minutum Pei191] Length = 1097 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 7/164 (4%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PL + F + + G+ NR A A S+ +D+ G NPL +H + G GKTH L AI Sbjct: 710 PLVPTYTFDSMVIGA-NRFAHATAISV--IDNPGNL---YNPLVLHGATGTGKTHFLNAI 763 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 A K+ + F + + ++ ++N +LIDD+ Sbjct: 764 GYALSKKYGQQNIFLTNGVRFSRGIQRYVVEGKINTFEEFVKNTKAVLIDDIHLTAVNEQ 823 Query: 277 QHEF-CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 E+ LN L S KQ+V + PP L L+ I +L G Sbjct: 824 NREYISKYLNYFLQSNKQIVITSKYPPESLAKLEELINFKLDAG 867 >gi|27544706|dbj|BAC55048.1| DnaA [Mycobacterium leprae] Length = 180 Score = 60.1 bits (144), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 89/187 (47%), Gaps = 27/187 (14%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS---VEKT 122 +++ LSVP++F++ I+ IT Q +++ VR +A PS ++ Sbjct: 2 TIIEGFALLSVPSSFVQNEIERHLRTPITDALSRRLG--QQIQLGVR-IAPPSTDHIDDN 58 Query: 123 ASSPSITKLSPINTNISKS---PIILGKQTISPVF-------------GSPLDSRFVFST 166 +SS + T+ ++ P+ Q + F G+ L+ R+ F T Sbjct: 59 SSSADVLLTDDCGTDTDENYGEPLTGEYQGLPTYFTERPHHTESTVTGGTSLNRRYTFET 118 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL A N + + P Sbjct: 119 FVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPG 173 Query: 227 LRVVYLT 233 +RV Y++ Sbjct: 174 MRVKYVS 180 >gi|320104949|ref|YP_004180540.1| Chromosomal replication initiator DnaA [Isosphaera pallida ATCC 43644] gi|319752231|gb|ADV63991.1| Chromosomal replication initiator DnaA [Isosphaera pallida ATCC 43644] Length = 439 Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 89/388 (22%), Positives = 157/388 (40%), Gaps = 58/388 (14%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV------RLNPLFIHASVGLGKTHLLQAI 216 + +I+G A+ A+ + VD+ G + +PL + G+GKT +L + Sbjct: 57 AWRGWIDGPETARAVACAREL--VDTAGPSATIEQARRAASPLVLFGPPGVGKTRVLAGL 114 Query: 217 A----NASIKRQPNL--------------RVVYLTAEYFMWRFASAIRDNCAL--NLKDS 256 A +A+ R+ R V++TAE F A R A L+ Sbjct: 115 AGDWLDAAAGRELTFVASSPPQSEVVARHRTVWMTAEGFGTACERAERAGIAGWERLRRR 174 Query: 257 LRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL--ESLDPRIR 313 +R++ LL +DD++ L+ ++ Q E L++L + A P+ L + R+ Sbjct: 175 IRSVGLLALDDLEGLRASRVAQRELIATLDALREHGGVAAVTARGSPARLAAQGWSRRLV 234 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +RL GG++V L E R R + + + +N + + +A TT ELDG Sbjct: 235 NRLVGGLAVRLEPPSLETRRRAALER---AGQIGSVVVLNTDAIEWLAAHATTL-PELDG 290 Query: 374 AFNQLVFRHSFAPILT--------AEIAD---ELLSHLVNTGETKKMRIED--------- 413 F ++ S L A++AD +L++ V+T R E Sbjct: 291 LFYRVRLMASLQGGLGSSPRIVDRADVADWLTDLVTPDVSTKPNDSKRHEGSAVPDSTAR 350 Query: 414 ---IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 AK + + +L RR + + + R A++L+ + + +GR G RD Sbjct: 351 IAARIAATAKAFGLKPTELRGPRRSQRIAQARATAVWLALRVPGATIAGVGRALGGRDPA 410 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKR 498 T+ HA + TD ++ L R Sbjct: 411 TIRHARTVADARRATDPAYAALLDHLDR 438 >gi|170783852|gb|ACB37399.1| DnaA [Spiroplasma mirum] Length = 150 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 39/119 (32%), Positives = 62/119 (52%), Gaps = 4/119 (3%) Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K S D LLIDD+Q L + +E F ++ NS ++ KQ+V +D+ P +L + R Sbjct: 35 FKTSYDKFDCLLIDDIQLLAKRNKTNELFFYIFNSFIEKNKQIVITSDKYPDDLGGFEAR 94 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 I SR G+S+ L D+E IL+ +L Q+ + L +EE L +A + R+ Sbjct: 95 IISRFSYGLSIGLDFPDFETAIKILEQKL--KQQNNLAL-FSEESLEFIALNFNSDVRK 150 >gi|27544728|dbj|BAC55059.1| DnaA [Mycobacterium terrae] Length = 174 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 29/185 (15%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG--VEILVRSVALPSVEKTA 123 +++ L+VP++F++ I+ IT SR G +E+ VR P+ + +A Sbjct: 2 AIVEGFALLAVPSSFVQNEIERHLRTQITAAL----SRRLGHDIELGVRIAPAPADDGSA 57 Query: 124 SS--PSITKLSPINTNISKSPIILGKQTISPVF-------------GSPLDSRFVFSTFI 168 SS P+ + + +P + + P + G+ L+ R+ F TF+ Sbjct: 58 SSDNPAPARAGEDEDDEDDTPDV---EYDWPNYFTERPSDDSATADGASLNRRYTFDTFV 114 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 G+SNR A AA +IAE + Y NPLFI GLGKTHLL A N + + P +R Sbjct: 115 IGTSNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYTQRLFPGMR 169 Query: 229 VVYLT 233 V Y++ Sbjct: 170 VKYVS 174 >gi|323138031|ref|ZP_08073105.1| Chromosomal replication initiator DnaA domain [Methylocystis sp. ATCC 49242] gi|322396750|gb|EFX99277.1| Chromosomal replication initiator DnaA domain [Methylocystis sp. ATCC 49242] Length = 262 Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I DI +V + Y +++ D+ S RR +V PR +A YL+ +T +S P+IG RDHT Sbjct: 7 ISDIIEVVCEQYRVTQTDIRSARRTGRLVEPRHIAAYLAAKLTDKSLPQIG-LLMRRDHT 65 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLK 497 +VLH ++ + D T + V L+ Sbjct: 66 SVLHGRDRIAARVAEDATFAEHVYALE 92 >gi|54633732|gb|AAV35992.1| DnaA [Wolbachia endosymbiont of Zootermopsis angusticollis] gi|54633734|gb|AAV35993.1| DnaA [Wolbachia endosymbiont of Zootermopsis nevadensis] Length = 118 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 6/122 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 3 GLVADINETTFELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKV 57 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T E A E L L+ + K + IE+IQ+ A+ +NI D+ SNRR+R++ Sbjct: 58 AHTSLIGRSMTVESASETLMDLLRSNH-KSITIEEIQKKTAEFFNIKVADMQSNRRLRSL 116 Query: 439 VR 440 R Sbjct: 117 AR 118 >gi|169825622|ref|YP_001695780.1| DnaA [Lysinibacillus sphaericus C3-41] gi|168990110|gb|ACA37650.1| DnaA [Lysinibacillus sphaericus C3-41] Length = 57 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 41/57 (71%) Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYLS+ +T S P+IG FG RDHTTV+HA K+ +L+ D+ L+++V+ ++ ++ + Sbjct: 1 MYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISSLLKNDVQLQQDVKQIRSMLGK 57 >gi|82622255|gb|ABB86748.1| DnaA [Wolbachia endosymbiont of Encarsia formosa] Length = 118 Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + +E+R IL+ ++ E + I ++VL +AR + ++ REL+GA N++ Sbjct: 3 GLVADINKTTFELRLGILQAKV-----ERMNIYIPKDVLEFLARNIKSNIRELEGALNKV 57 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ Sbjct: 58 AHTSLIGRSMTVESASETLIDLLRSNH-RSITIEEIQKKVAEFFNIKVADMQSNRRLRSL 116 Query: 439 VR 440 R Sbjct: 117 AR 118 >gi|82622261|gb|ABB86751.1| DnaA [Wolbachia endosymbiont of Protocalliphora sialia] Length = 118 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 3 GLVADINETTFELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKV 57 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ Sbjct: 58 THTSLIGRSMTVESASETLIDLLRSNH-RSITIEEIQKKVAEFFNIKVADMRSNRRLRSL 116 Query: 439 VR 440 R Sbjct: 117 AR 118 >gi|322420884|ref|YP_004200107.1| Chromosomal replication initiator DnaA [Geobacter sp. M18] gi|320127271|gb|ADW14831.1| Chromosomal replication initiator DnaA [Geobacter sp. M18] Length = 235 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/213 (28%), Positives = 96/213 (45%), Gaps = 33/213 (15%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F P+ RF F F+ N+ A AQ +A S G T N L+++ G GKTHL Sbjct: 4 IFDFPVVPRFCFENFVVCGGNKTAYQFAQRLA---SGGDTE---NLLYVYGPEGSGKTHL 57 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLKDSLRNIDLL-------L 264 L A+++ R YF +R A+++ C ++ R +L L Sbjct: 58 LTALSSECDGR------------YFSFRDAASL--YCGNYRIEGPSRLAELFAGAKALIL 103 Query: 265 IDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 D + ++ E L N+ + K++ + PP EL LD + SRL G+ + Sbjct: 104 DDLDLLPDYQEVRVELWELFNAFYSAGKKIAISGLAPPKELPHLDGHLTSRLLWGLVARM 163 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 + D E R ILK +LA ED ++ + +EV+ Sbjct: 164 DVSDDESRRMILK-KLA----EDRQMTLPDEVI 191 >gi|237733412|ref|ZP_04563893.1| chromosomal replication initiator protein dnaA [Mollicutes bacterium D7] gi|229383447|gb|EEO33538.1| chromosomal replication initiator protein dnaA [Coprobacillus sp. D7] Length = 147 Score = 58.2 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 49/86 (56%) Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E I + A+ Y ++ + L+S + R + PR++ MYL + + +F EIG F +RDH+T Sbjct: 56 ESILKTTAEFYYLTISQLISKNKTRKLTTPREMCMYLMRELLDITFAEIGATFSNRDHST 115 Query: 472 VLHAVRKVEKMLETDITLKKEVELLK 497 V+ A +VE ++ D K + LK Sbjct: 116 VMKACARVETKIKKDPDYKLAINKLK 141 >gi|39996180|ref|NP_952131.1| chromosomal replication initiator protein DnaA, truncation [Geobacter sulfurreducens PCA] gi|39982945|gb|AAR34404.1| chromosomal replication initiator protein DnaA, truncation [Geobacter sulfurreducens PCA] Length = 258 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 25/256 (9%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 VF P+ ++ F F+ + N A A+ + D G N L++H G GKTHL Sbjct: 20 VFDFPVTPKYSFDNFVICAGNETACRFARRL--TDESGSE----NLLYLHGPSGSGKTHL 73 Query: 213 LQAIANASIKRQPNLRVVYLTA-----EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 L A+ A + LR V + E + + + L + R LL+DD Sbjct: 74 LMAM-GACFAGRVGLRAVPCISFKDVDEIYHGEYPA----EEVSRLAERFRGAPALLVDD 128 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + + + ++ E L N + + + PP+EL +LD + SRL G+ + Sbjct: 129 LHLIPDQQSVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHLTSRLLWGLVAKTDI 188 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D + R I++ +LA ++ + + +L+HV R V + LD + R++F+ Sbjct: 189 SDDDSRRRIMQ-KLADDRQIILPADAVDYLLVHVRRDVPSLVAALDA-----ITRYAFSA 242 Query: 387 --ILTAEIADELLSHL 400 +T +A E L+ L Sbjct: 243 KRKITMRLAREALALL 258 >gi|82622263|gb|ABB86752.1| DnaA [Wolbachia endosymbiont of Protocalliphora sialia] gi|82622265|gb|ABB86753.1| DnaA [Wolbachia endosymbiont of Nasonia giraulti] gi|82622267|gb|ABB86754.1| DnaA [Wolbachia endosymbiont of Nasonia longicornis] gi|82622269|gb|ABB86755.1| DnaA [Wolbachia endosymbiont of Nasonia vitripennis] gi|82830808|gb|ABB92520.1| DnaA [Wolbachia endosymbiont of Drosophila simulans] gi|82830810|gb|ABB92521.1| DnaA [Wolbachia endosymbiont of Drosophila simulans] gi|82830812|gb|ABB92522.1| DnaA [Wolbachia endosymbiont of Drosophila simulans] gi|82830814|gb|ABB92523.1| DnaA [Wolbachia endosymbiont of Camponotus sayi] Length = 118 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 3 GLVADINETTFELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKV 57 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ Sbjct: 58 THTSLIGRSMTVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSL 116 Query: 439 VR 440 R Sbjct: 117 AR 118 >gi|298505194|gb|ADI83917.1| DnaA regulatory inactivator Hda [Geobacter sulfurreducens KN400] Length = 242 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/256 (25%), Positives = 112/256 (43%), Gaps = 25/256 (9%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 VF P+ ++ F F+ + N A A+ + D G N L++H G GKTHL Sbjct: 4 VFDFPVTPKYSFDNFVICAGNETACRFARRL--TDESGSE----NLLYLHGPSGSGKTHL 57 Query: 213 LQAIANASIKRQPNLRVVYLTA-----EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 L A+ A + LR V + E + + + L + R LL+DD Sbjct: 58 LMAM-GACFAGRVGLRAVPCISFKDVDEIYHGEYPA----EEVSRLAERFRGAPALLVDD 112 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + + + ++ E L N + + + PP+EL +LD + SRL G+ + Sbjct: 113 LHLIPDQQSVRVELWQLFNDFYQAGRPIAITGLNPPNELPTLDGHLTSRLLWGLVAKTDI 172 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D + R I++ +LA ++ + + +L+HV R V + LD + R++F+ Sbjct: 173 SDDDSRRRIMQ-KLADDRQIILPADAVDYLLVHVRRDVPSLVAALDA-----ITRYAFSA 226 Query: 387 --ILTAEIADELLSHL 400 +T +A E L+ L Sbjct: 227 KRKITMRLAREALALL 242 >gi|27544738|dbj|BAC55064.1| DnaA [Mycobacterium xenopi] Length = 178 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL Sbjct: 105 GTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLH 159 Query: 215 AIANASIKRQPNLRVVYLT 233 A N + + P +RV Y++ Sbjct: 160 AAGNYAQRLFPGMRVKYVS 178 >gi|27544722|dbj|BAC55056.1| DnaA [Mycobacterium simiae] Length = 187 Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 5/81 (6%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 V G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHL Sbjct: 112 VGGTSLNRRYTFETFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHL 166 Query: 213 LQAIANASIKRQPNLRVVYLT 233 L A N + + P +RV Y++ Sbjct: 167 LHAAGNYAQRLFPGMRVKYVS 187 >gi|82622253|gb|ABB86747.1| DnaA [Wolbachia endosymbiont of Protocalliphora sialia] gi|82622257|gb|ABB86750.1| DnaA [Wolbachia endosymbiont of Drosophila innubila (B)] gi|82622259|gb|ABB86749.1| DnaA [Wolbachia endosymbiont of Acraea eponina] Length = 118 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 62/104 (59%), Gaps = 3/104 (2%) Query: 339 RLAISQKEDPKLNIN--EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 RL I Q + ++NI ++VL +AR + ++ REL+GA N++ +T E A E Sbjct: 16 RLGILQAKVERMNIYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSMTVESASET 75 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ R Sbjct: 76 LIDLLRSNH-RSITIEEIQKKVAEFFNIKVADMQSNRRLRSLAR 118 >gi|291280753|ref|YP_003497587.1| hypothetical protein DEFDS_P211 [Deferribacter desulfuricans SSM1] gi|290755455|dbj|BAI81831.1| hypothetical protein [Deferribacter desulfuricans SSM1] Length = 535 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 14/176 (7%) Query: 134 INTNISKSPIILGKQT--ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 I IS I+ K T I+ + G+P ++ F FI +SN +A ++IAE Sbjct: 120 IEQQISYEQILEPKNTLIINGIKGTP---QYTFDNFIVDTSNELAYHYIKNIAENKLRDG 176 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 TV L + GLGK+HLL A+ N +K+ V + T E F A R Sbjct: 177 LTVLL-----YGPTGLGKSHLLHAMIN-EMKQHYEGVVNFYTGEIFFSEVMDAFRKKETY 230 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQ---HEFCHLLNSLLDSAKQVVAAADRPPSE 304 ++ D+L+IDD+ F K + + ++LN ++ K + DR P + Sbjct: 231 IFREQQIEADMLIIDDLHFALKKANEGFISFYNNILNERINRQKWTLLTTDRHPED 286 >gi|170783848|gb|ACB37397.1| DnaA [Spiroplasma eriocheiris] gi|170783850|gb|ACB37398.1| DnaA [Spiroplasma sp. CRAYFISH] gi|170783854|gb|ACB37400.1| DnaA [Spiroplasma sp. SHRIMP] Length = 150 Score = 57.8 bits (138), Expect = 4e-06, Method: Composition-based stats. Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 10/114 (8%) Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K S D LLIDD+Q L + +E F ++ NS ++ KQ+V +D+ P +L + R Sbjct: 35 FKTSYDKFDCLLIDDIQLLAKRNKTNELFFYIFNSFIEKNKQIVITSDKYPDDLGGFEAR 94 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSIL------KNRLAISQKEDPK---LNINEEV 356 I SR G+S+ L D+E IL +N LA+ +E + LN N +V Sbjct: 95 IISRFSYGLSIGLDSPDFETAIKILEQKLKQQNNLALFSEESLEFIALNFNSDV 148 >gi|27544714|dbj|BAC55052.1| DnaA [Mycobacterium nonchromogenicum] Length = 173 Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL Sbjct: 100 GASLNRRYTFDTFVIGTSNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLH 154 Query: 215 AIANASIKRQPNLRVVYLT 233 A N + + P +RV Y++ Sbjct: 155 AAGNYTQRLFPGMRVKYVS 173 >gi|309799270|ref|ZP_07693518.1| chromosomal replication initiator protein DnaA [Streptococcus infantis SK1302] gi|308117115|gb|EFO54543.1| chromosomal replication initiator protein DnaA [Streptococcus infantis SK1302] Length = 123 Score = 57.4 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 3/99 (3%) Query: 369 RELDGAFNQLVFRHSFAPI--LTAEIADELL-SHLVNTGETKKMRIEDIQRMVAKHYNIS 425 REL+GA N + I +T +IA E + + + + + I+ IQ V Y +S Sbjct: 10 RELEGALNDISLMAKVKKINDITVDIAAEAIRARKQDVSKMIVIPIDKIQTEVGNFYGVS 69 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 ++ RRV+ +V RQVAMYL++ MT S P+IG+ F Sbjct: 70 VKEMKGTRRVQNIVLARQVAMYLAREMTDNSLPKIGKEF 108 >gi|27544690|dbj|BAC55040.1| DnaA [Mycobacterium avium subsp. avium] Length = 187 Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 85/191 (44%), Gaps = 28/191 (14%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRYLETIT-----KLFQE--------------EHSRIQG 106 +++ LSVP++F++ I+ IT +L Q+ E + I Sbjct: 2 TIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPPDDVEDALIPP 61 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--TISPVF--GSPLDSRF 162 E + A S + A + P+ P ++ I P G+ L+ R+ Sbjct: 62 AEPFPDTDAALSADDGADGEPVENGEPVTDTQPGWPNYFTERPHAIDPAVAAGTSLNRRY 121 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL A N + + Sbjct: 122 TFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQR 176 Query: 223 RQPNLRVVYLT 233 P +RV Y++ Sbjct: 177 LFPGMRVKYVS 187 >gi|47093011|ref|ZP_00230790.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 4b H7858] gi|47018579|gb|EAL09333.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 4b H7858] Length = 62 Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 25/48 (52%), Positives = 35/48 (72%) Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 MYLS+ +T S P+IG FG RDHTTV+HA K+ ++L+TD LK ++ Sbjct: 1 MYLSRELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDL 48 >gi|82622249|gb|ABB86745.1| DnaA [Wolbachia endosymbiont of Teleogryllus taiwanemma] gi|82622251|gb|ABB86746.1| DnaA [Wolbachia endosymbiont of Caudra cautella] gi|82830806|gb|ABB92519.1| DnaA [Wolbachia endosymbiont of Drosophila simulans] Length = 118 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 6/122 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 3 GLVADINETTFELRLGILQAKV-----ERMNMYVPKDVLEFLARNIKSNIRELEGALNKV 57 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T E A E L L+ + + + IE+IQ+ +A+ +NI D+ SNRR+R++ Sbjct: 58 AHTSLIGRSMTVESASETLIDLLRSNH-RSITIEEIQKKIAEFFNIKIADMQSNRRLRSL 116 Query: 439 VR 440 R Sbjct: 117 AR 118 >gi|82830816|gb|ABB92524.1| DnaA [Wolbachia endosymbiont of Camponotus vafer] Length = 118 Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 67/122 (54%), Gaps = 6/122 (4%) Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 3 GLVADINETTFELRLGILQAKV-----EQMNMYVPKDVLEFLARNIKSNIRELEGALNKV 57 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T E A E L L+ + + + IE+IQ+ A+ +NI D+ SNRR+R++ Sbjct: 58 THTSLIGRSMTVESASETLIDLLRSNH-RSITIEEIQKKAAEFFNIKVADMQSNRRLRSL 116 Query: 439 VR 440 R Sbjct: 117 AR 118 >gi|27544720|dbj|BAC55055.1| DnaA [Mycobacterium scrofulaceum] Length = 187 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL Sbjct: 114 GTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLH 168 Query: 215 AIANASIKRQPNLRVVYLT 233 A N + + P +RV Y++ Sbjct: 169 AAGNYAQRLFPGMRVKYVS 187 >gi|92114232|ref|YP_574160.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter salexigens DSM 3043] gi|91797322|gb|ABE59461.1| regulatory inactivation of DnaA Hda protein [Chromohalobacter salexigens DSM 3043] Length = 232 Score = 57.0 bits (136), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 84/183 (45%), Gaps = 22/183 (12%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LF+ ++G G++HLLQA + + R R +YL + ++ + L Sbjct: 46 LFLWGALGSGRSHLLQAACHEAGDR--GDRALYLPLHDL---------GHFPPHMLEDLE 94 Query: 259 NIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +DL+ IDD+ + G K + H N + D+ K++V AAD P +L ++ P + SRL Sbjct: 95 RLDLVAIDDLSAVLGRKRWEEGLFHFFNRMRDADKRLVIAADAAPRQLSTVLPDLASRLT 154 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG-RELDGAFN 376 GV+ + D RF L+ R + + P VAR + G R+L F+ Sbjct: 155 WGVTFHVAPLDDAGRFEALQLRARVRGMQLPD---------EVARYILHRGPRQLPALFD 205 Query: 377 QLV 379 L Sbjct: 206 ALA 208 >gi|27544702|dbj|BAC55046.1| DnaA [Mycobacterium intracellulare] Length = 189 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 5/79 (6%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL Sbjct: 116 GTSLNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLH 170 Query: 215 AIANASIKRQPNLRVVYLT 233 A N + + P +RV Y++ Sbjct: 171 AAGNYAQRLFPGMRVKYVS 189 >gi|88812592|ref|ZP_01127840.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231] gi|88790186|gb|EAR21305.1| hypothetical protein NB231_08610 [Nitrococcus mobilis Nb-231] Length = 244 Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 22/162 (13%) Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA-IA 217 D RF F+ F+ G N A+ A + I + D R ++++ G+GK+HLLQA Sbjct: 22 DERFDFAGFVAGP-NAEAVAALELIGKGD-------RRRVIYLYGEPGVGKSHLLQAACG 73 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 AS + VVYL + N + L L +D++ +DD+ L + Sbjct: 74 EASAWGRA---VVYLPLRQLV---------NRSPRLLQELEGVDVVALDDLDCLTKAIEW 121 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 Q HL N L D+ ++++ A R P++L P + SRLQG Sbjct: 122 QQAAFHLFNRLQDAGRELLMAGPRRPAKLGLALPDLVSRLQG 163 >gi|331013495|gb|EGH93551.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 234 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 19/155 (12%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK- 222 F + G+ N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 18 FVNYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHLLQA---ACLRF 69 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 Q VYL A I + + L D L +L+ +DD+Q + GK E Sbjct: 70 EQLGEPAVYLP-------LAEVIDEG--IELFDHLEQYELVCLDDLQAIVGKPEWEEALF 120 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA + P EL P ++SRL Sbjct: 121 HLFNRLRDSGRRLLIAASKSPPELPVKLPDLKSRL 155 >gi|27544692|dbj|BAC55041.1| DnaA [Mycobacterium bovis] Length = 185 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL A Sbjct: 115 LNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAG 169 Query: 218 NASIKRQPNLRVVYLT 233 N + + P +RV Y++ Sbjct: 170 NYAQRLFPGMRVKYVS 185 >gi|71734306|ref|YP_275849.1| DNA replication initiation factor [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485896|ref|ZP_05639937.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628380|ref|ZP_06461334.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289648134|ref|ZP_06479477.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi str. 2250] gi|298487973|ref|ZP_07006012.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|71554859|gb|AAZ34070.1| DnaA family protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157524|gb|EFH98605.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323391|gb|EFW79479.1| DNA replication initiation factor [Pseudomonas syringae pv. glycinea str. B076] gi|320327588|gb|EFW83600.1| DNA replication initiation factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330866057|gb|EGH00766.1| DNA replication initiation factor [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330876426|gb|EGH10575.1| DNA replication initiation factor [Pseudomonas syringae pv. glycinea str. race 4] gi|330889389|gb|EGH22050.1| DNA replication initiation factor [Pseudomonas syringae pv. mori str. 301020] gi|330986707|gb|EGH84810.1| DNA replication initiation factor [Pseudomonas syringae pv. lachrymans str. M301315] Length = 234 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 19/155 (12%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK- 222 F + G+ N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 18 FVNYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHLLQA---ACLRF 69 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 Q VYL A I + + L D L +L+ +DD+Q + GK E Sbjct: 70 EQLGEPAVYLP-------LAEVIDEG--IELFDHLEQYELVCLDDLQAIVGKPEWEEALF 120 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA + P EL P ++SRL Sbjct: 121 HLFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRL 155 >gi|27544688|dbj|BAC55039.1| DnaA [Mycobacterium africanum] gi|27544712|dbj|BAC55051.1| DnaA [Mycobacterium microti] gi|27544732|dbj|BAC55061.1| DnaA [Mycobacterium tuberculosis H37Rv] Length = 185 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/76 (46%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+ F TF+ G+SNR A AA +IAE + Y NPLFI GLGKTHLL A Sbjct: 115 LNRRYTFDTFVIGASNRFAHAAALAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAG 169 Query: 218 NASIKRQPNLRVVYLT 233 N + + P +RV Y++ Sbjct: 170 NYAQRLFPGMRVKYVS 185 >gi|330953483|gb|EGH53743.1| DNA replication initiation factor [Pseudomonas syringae Cit 7] gi|330972385|gb|EGH72451.1| DNA replication initiation factor [Pseudomonas syringae pv. aceris str. M302273PT] gi|330980218|gb|EGH78371.1| DNA replication initiation factor [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 234 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F + G+ N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 17 TFVNYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VYL A I + + L D L +L+ +DD+Q + GK E Sbjct: 69 FEQLGEPAVYLP-------LAEVIDEG--IELFDHLEQYELVCLDDLQAIVGKPDWEEAL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA + P EL P ++SRL Sbjct: 120 FHLFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRL 155 >gi|28868909|ref|NP_791528.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213971898|ref|ZP_03399998.1| DnaA family protein [Pseudomonas syringae pv. tomato T1] gi|301384468|ref|ZP_07232886.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato Max13] gi|302062183|ref|ZP_07253724.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato K40] gi|302131786|ref|ZP_07257776.1| DNA replication initiation factor [Pseudomonas syringae pv. tomato NCPPB 1108] gi|302187852|ref|ZP_07264525.1| DNA replication initiation factor [Pseudomonas syringae pv. syringae 642] gi|28852148|gb|AAO55223.1| DnaA family protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213923323|gb|EEB56918.1| DnaA family protein [Pseudomonas syringae pv. tomato T1] gi|330877082|gb|EGH11231.1| DNA replication initiation factor [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330966590|gb|EGH66850.1| DNA replication initiation factor [Pseudomonas syringae pv. actinidiae str. M302091] gi|331016800|gb|EGH96856.1| DNA replication initiation factor [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 234 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F + G+ N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 17 TFVNYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VYL A I + + L D L +L+ +DD+Q + GK E Sbjct: 69 FEQLGEPAVYLP-------LAEVIDEG--IELFDHLEQYELVCLDDLQAIVGKPEWEEAL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA + P EL P ++SRL Sbjct: 120 FHLFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRL 155 >gi|66046915|ref|YP_236756.1| DNA replication initiation factor [Pseudomonas syringae pv. syringae B728a] gi|63257622|gb|AAY38718.1| DnaA family protein [Pseudomonas syringae pv. syringae B728a] Length = 261 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F + G+ N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 44 TFVNYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHLLQA---ACLR 95 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VYL A I + + L D L +L+ +DD+Q + GK E Sbjct: 96 FEQLGEPAVYLP-------LAEVIDEG--IELFDHLEQYELVCLDDLQAIVGKPDWEEAL 146 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA + P EL P ++SRL Sbjct: 147 FHLFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRL 182 >gi|237798977|ref|ZP_04587438.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021831|gb|EGI01888.1| DNA replication initiation factor [Pseudomonas syringae pv. oryzae str. 1_6] Length = 234 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 19/155 (12%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK- 222 F + G+ N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 18 FVNYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHLLQA---ACLRF 69 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 Q VYL A I + + L D L +L+ +DD+Q + GK E Sbjct: 70 EQMGEPAVYLP-------MAEVIDEG--IELFDHLEQYELVCLDDLQAVVGKPDWEEALF 120 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA + P EL P ++SRL Sbjct: 121 HLFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRL 155 >gi|330960588|gb|EGH60848.1| DNA replication initiation factor [Pseudomonas syringae pv. maculicola str. ES4326] Length = 234 Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 77/155 (49%), Gaps = 19/155 (12%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK- 222 F + G+ N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 18 FVNYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHLLQA---ACLRF 69 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 Q VYL A I + + L D L +L+ +DD+Q + GK E Sbjct: 70 EQMGEPAVYLP-------LAEVIDEG--IELFDHLEQYELVCLDDLQAVVGKPDWEEALF 120 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA + P EL P ++SRL Sbjct: 121 HLFNRLRDSGRRLLIAASKSPRELPVKLPDLKSRL 155 >gi|170720412|ref|YP_001748100.1| DNA replication initiation factor [Pseudomonas putida W619] gi|169758415|gb|ACA71731.1| DnaA regulatory inactivator Hda [Pseudomonas putida W619] Length = 235 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 18/155 (11%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G++HLLQA + + Sbjct: 17 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKQGVGRSHLLQAATHRFQQ 72 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 R VYL + R + L D L +L+ IDD+ + GK E Sbjct: 73 RGEA--AVYLPLAQLLER---------GIGLLDYLAQYELVCIDDLHVIAGKAEWEEAMF 121 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL P ++SRL Sbjct: 122 HLFNRLRDSGRRLLLAASASPRELPIRLPDLKSRL 156 >gi|325274455|ref|ZP_08140535.1| DNA replication initiation factor [Pseudomonas sp. TJI-51] gi|324100409|gb|EGB98175.1| DNA replication initiation factor [Pseudomonas sp. TJI-51] Length = 235 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 20/156 (12%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G++HLLQA + + Sbjct: 17 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKQGVGRSHLLQAATHRFQQ 72 Query: 223 R-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 R +P VYL + R + L D L +L+ IDD+ + GK E Sbjct: 73 RGEP---AVYLPLAQLLER---------GVGLLDYLAQYELVCIDDLHVIAGKPDWEEAM 120 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL P ++SRL Sbjct: 121 FHLFNRLRDSGRRLLLAASASPRELPVKLPDLKSRL 156 >gi|330941426|gb|EGH44239.1| DNA replication initiation factor [Pseudomonas syringae pv. pisi str. 1704B] Length = 234 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 77/155 (49%), Gaps = 19/155 (12%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK- 222 F + G+ N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 18 FVNYYPGA-NAAALGYVERLCEADA-GWTQ---SVIYLWGKDGVGRTHLLQA---ACLRF 69 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 Q VYL A I + + L D L +L+ +DD+Q + GK E Sbjct: 70 EQLGEPAVYLP-------LAEVIDEG--IELFDHLEQYELVCLDDLQAIVGKPDWEEALF 120 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA + P +L P ++SRL Sbjct: 121 HLFNRLRDSGRRLLIAASKSPPQLPVKLPDLKSRL 155 >gi|167032278|ref|YP_001667509.1| DNA replication initiation factor [Pseudomonas putida GB-1] gi|166858766|gb|ABY97173.1| DnaA regulatory inactivator Hda [Pseudomonas putida GB-1] Length = 235 Score = 54.3 bits (129), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 20/156 (12%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G++HLLQA + + Sbjct: 17 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKQGVGRSHLLQAATHRFQQ 72 Query: 223 R-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 R +P VYL + R + L D L +L+ IDD+ + GK E Sbjct: 73 RGEP---AVYLPLAQLLDR---------GVGLLDYLAQYELVCIDDLHVIAGKADWEEAM 120 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL P ++SRL Sbjct: 121 FHLFNRLRDSGRRLLLAASASPRELPVKLPDLKSRL 156 >gi|114319679|ref|YP_741362.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226073|gb|ABI55872.1| regulatory inactivation of DnaA Hda protein [Alkalilimnicola ehrlichii MLHE-1] Length = 245 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 93/202 (46%), Gaps = 23/202 (11%) Query: 152 PVFGSPLDSRFV----FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 PV LD R+ +F+ G+ N+ AL A + A G+ RL LF++ + Sbjct: 12 PVQQLALDIRWTDIASLDSFVAGA-NQQALDAVRRAA----MGFGD-RL--LFLYGQGPV 63 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GK+HLLQA + +R + YL F + L + ++DLL +DD Sbjct: 64 GKSHLLQAACREAGER--GFKAAYLPLNEF-----QGMPPGSVLA---GMESMDLLALDD 113 Query: 268 MQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +Q L G+ E F +L N S ++ +ADR P +L + P + SRLQ G+++ L Sbjct: 114 LQVLAGEADWEEHFFYLFNRTRASGGHMILSADRRPVDLSLVLPDLASRLQWGLTLRLEP 173 Query: 327 HDYEMRFSILKNRLAISQKEDP 348 D + L+ R A E P Sbjct: 174 LDDVGKLQGLQARAAARGLELP 195 >gi|26988400|ref|NP_743825.1| DNA replication initiation factor [Pseudomonas putida KT2440] gi|148549256|ref|YP_001269358.1| DNA replication initiation factor [Pseudomonas putida F1] gi|24983155|gb|AAN67289.1|AE016355_7 DnaA family protein [Pseudomonas putida KT2440] gi|148513314|gb|ABQ80174.1| regulatory inactivation of DnaA Hda protein [Pseudomonas putida F1] gi|313500166|gb|ADR61532.1| DNA replication initiation factor [Pseudomonas putida BIRD-1] Length = 235 Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 20/156 (12%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G++HLLQA + + Sbjct: 17 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKQGVGRSHLLQAATHRFQQ 72 Query: 223 R-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 R +P VYL + R + L D L +L+ IDD+ + GK E Sbjct: 73 RGEP---AVYLPLAQLLDR---------GVELLDYLAQYELVCIDDLHVIAGKADWEEAM 120 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL P ++SRL Sbjct: 121 FHLFNRLRDSGRRLLLAASASPRELPIKLPDLKSRL 156 >gi|89514755|gb|ABD75266.1| chromosomal replication initiatior protein DnaA [Sinorhizobium xinjiangense] Length = 67 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/37 (62%), Positives = 30/37 (81%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV 72 +++F VS+RLK QVGPDV+ASWF RLK HSV ++V Sbjct: 31 DALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVV 67 >gi|77457863|ref|YP_347368.1| DNA replication initiation factor [Pseudomonas fluorescens Pf0-1] gi|77381866|gb|ABA73379.1| conserved hypothetical protein [Pseudomonas fluorescens Pf0-1] Length = 234 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 76/156 (48%), Gaps = 20/156 (12%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 16 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKHGVGRTHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VYL M R + + D+L +L+ +DD+Q + GK E Sbjct: 69 FEQMGEPAVYLPLAELMDR---------GIEILDNLEQYELVCLDDLQVIAGKADWEEAM 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL ++SRL Sbjct: 120 FHLFNRLRDSGRRLLIAASTSPRELPIKLADLKSRL 155 >gi|85715575|ref|ZP_01046555.1| ATPase involved in DNA replication initiation [Nitrobacter sp. Nb-311A] gi|85697514|gb|EAQ35391.1| ATPase involved in DNA replication initiation [Nitrobacter sp. Nb-311A] Length = 125 Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 48/91 (52%), Gaps = 7/91 (7%) Query: 396 LLSHL----VNTGETKKMRI-EDIQRMVAKHYNISRNDLLS-NRRVRTVVRPRQVAMYLS 449 LL+HL + T RI DI R+VA+ + I +++ R RQVAMYL+ Sbjct: 2 LLTHLSPASLGRSRTSTRRICRDIARLVAEEFEIDAAAMMAPTRGAPRAAFARQVAMYLA 61 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 + SF IGR F DRD TTV HA R VE Sbjct: 62 HVGFALSFEAIGRAF-DRDRTTVSHACRVVE 91 >gi|226945733|ref|YP_002800806.1| DNA replication initiation factor [Azotobacter vinelandii DJ] gi|226720660|gb|ACO79831.1| DnaA family protein, probable Hda [Azotobacter vinelandii DJ] Length = 234 Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 17/155 (10%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ F G+ N AL A+ + E D+ G+T + +++ + G+G++HLLQA A + Sbjct: 17 TFANFYPGA-NAAALGYAERLCEPDA-GWTE---SLIYLWGAEGVGRSHLLQA-ACIRFE 70 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 ++ L + AE + D + L D+L +L+ +DD++ + G+ E Sbjct: 71 QRRELAIYLPLAE---------VADYGPV-LLDNLEQSELVCLDDLEAIAGRADWEEALF 120 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L D ++++ +A PP EL P ++SRL Sbjct: 121 HLFNRLRDCGRRLLLSASVPPRELSIELPDLKSRL 155 >gi|19423268|gb|AAL88453.1|AF480365_1 putative DNA replication initiator [Streptomyces avermitilis] Length = 61 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%) Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 Q+AMYL + +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 1 QMAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRI 58 >gi|229591907|ref|YP_002874026.1| DNA replication initiation factor [Pseudomonas fluorescens SBW25] gi|229363773|emb|CAY51191.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25] Length = 234 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 20/156 (12%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 16 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKHGVGRTHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VYL M R + + D L +L+ +DD+Q + GK E Sbjct: 69 FEQMGEPAVYLPLAELMDR---------GIGIFDHLEQYELVCLDDLQAIAGKADWEEAL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL ++SRL Sbjct: 120 FHLFNRLRDSGRRLLIAASSSPRELPIKLADLKSRL 155 >gi|110633230|ref|YP_673438.1| chromosomal replication initiator, DnaA-like [Mesorhizobium sp. BNC1] gi|110284214|gb|ABG62273.1| Chromosomal replication initiator, DnaA-like protein [Chelativorans sp. BNC1] Length = 141 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 33/91 (36%), Positives = 54/91 (59%), Gaps = 3/91 (3%) Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRT-VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 E + +VA +N+S ++ S+ R T V R RQ+ MY++ ++ S EIGR FG RD T Sbjct: 43 ECVMDIVAALFNVSGKEIRSSGRSSTQVARVRQIGMYVAHVVLGLSMKEIGRGFG-RDRT 101 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TV HA +E M + D+ + V +++R+ + Sbjct: 102 TVQHACHLIEDMRD-DVEFDQIVLVIERVTA 131 >gi|312962335|ref|ZP_07776826.1| DnaA family protein [Pseudomonas fluorescens WH6] gi|311283262|gb|EFQ61852.1| DnaA family protein [Pseudomonas fluorescens WH6] Length = 234 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/156 (30%), Positives = 75/156 (48%), Gaps = 20/156 (12%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 16 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKQGVGRTHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VYL M R + + D L +L+ +DD+Q + GK E Sbjct: 69 FEQMGEPAVYLPLAELMDR---------GIGIFDHLEQYELVCLDDLQAIAGKADWEEAL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL ++SRL Sbjct: 120 FHLFNRLRDSGRRLLIAAATSPRELPIKLADLKSRL 155 >gi|104780562|ref|YP_607060.1| DNA replication initiation factor [Pseudomonas entomophila L48] gi|95109549|emb|CAK14250.1| conserved hypothetical protein; DnaA family protein [Pseudomonas entomophila L48] Length = 261 Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 18/155 (11%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G+THLLQA + Sbjct: 43 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKQGVGRTHLLQAATHRF-- 96 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 +Q VYL + R + L D L +L+ IDD+ + GK E Sbjct: 97 QQLGEPAVYLPLAQLLER---------GVELLDHLEQYELVCIDDLHVIAGKADWEEAMF 147 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL ++SRL Sbjct: 148 HLFNRLRDSGRRLLLAASSSPRELPIKLADLKSRL 182 >gi|154251331|ref|YP_001412155.1| chromosomal replication initiator DnaA domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154155281|gb|ABS62498.1| Chromosomal replication initiator DnaA domain [Parvibaculum lavamentivorans DS-1] Length = 136 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 2/68 (2%) Query: 414 IQRMVAKHYNISRNDLLS-NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +Q VA+ +N+ +++ S RR V + RQVAMYL+ ++ S +GR FG RD TT Sbjct: 41 MQETVARAWNVPVDEIRSPTRRRAPVAQARQVAMYLTHVLYGFSLSAVGRHFG-RDRTTA 99 Query: 473 LHAVRKVE 480 HA R VE Sbjct: 100 AHACRLVE 107 >gi|154248437|ref|YP_001419395.1| chromosomal replication initiator DnaA domain-containing protein [Xanthobacter autotrophicus Py2] gi|154162522|gb|ABS69738.1| Chromosomal replication initiator DnaA domain [Xanthobacter autotrophicus Py2] Length = 136 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 +T R+ I R+VA+ Y I + +LS ++ RPR VAM L + T + +G Sbjct: 35 AQTPPSRVATILRVVAERYGIPQRAMLSRSKLPKYQRPRLVAMALCRRCTRINSEVVGEA 94 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG R TTVL+A R V + L D T E+ L++ I Sbjct: 95 FG-RHRTTVLNAERTVARRLSIDPTFAAELGALEQTI 130 >gi|192289080|ref|YP_001989685.1| Chromosomal replication initiator DnaA domain [Rhodopseudomonas palustris TIE-1] gi|192282829|gb|ACE99209.1| Chromosomal replication initiator DnaA domain [Rhodopseudomonas palustris TIE-1] Length = 208 Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 43/73 (58%) Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA + ++ D+ + RR V R A L++ +T R++P+IGR RDHTT++HAV Sbjct: 20 VADSFGVTVQDMRARRRDGKVYHARAAACLLARELTGRTYPQIGRVLAGRDHTTIIHAVE 79 Query: 478 KVEKMLETDITLK 490 + +ML +D K Sbjct: 80 RAREMLASDDDFK 92 >gi|254492445|ref|ZP_05105617.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxidans DMS010] gi|224462337|gb|EEF78614.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxydans DMS010] Length = 234 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 16/168 (9%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 L+ L+++ G GKTHLL IA A ++ RV+YL+ + A+ Sbjct: 43 LDFLYLYGETGTGKTHLL--IACAEKVQKLGFRVIYLSLAELIQTSEPAVL--------Q 92 Query: 256 SLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 SL DLL +DD++ + G K + H N L D+ ++ +A+ P+ + P + S Sbjct: 93 SLEQADLLCLDDLEAVAGNKEWEVALFHCFNRLHDAKGSLLVSAEHNPANSQIQLPDLCS 152 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 RL G+ L E K + I Q + L +N++V ++ R Sbjct: 153 RLATGLVYQLTTMSDEQ-----KQQALILQSQKRGLTMNDDVAQYLLR 195 >gi|15596144|ref|NP_249638.1| DNA replication initiation factor [Pseudomonas aeruginosa PAO1] gi|116048871|ref|YP_792328.1| DNA replication initiation factor [Pseudomonas aeruginosa UCBPP-PA14] gi|218893083|ref|YP_002441952.1| DNA replication initiation factor [Pseudomonas aeruginosa LESB58] gi|254239298|ref|ZP_04932621.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|254245231|ref|ZP_04938553.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|296390698|ref|ZP_06880173.1| DNA replication initiation factor [Pseudomonas aeruginosa PAb1] gi|9946853|gb|AAG04336.1|AE004529_2 conserved hypothetical protein [Pseudomonas aeruginosa PAO1] gi|115584092|gb|ABJ10107.1| conserved hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14] gi|126171229|gb|EAZ56740.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719] gi|126198609|gb|EAZ62672.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192] gi|218773311|emb|CAW29123.1| conserved hypothetical protein [Pseudomonas aeruginosa LESB58] Length = 234 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ + G+ N AL + + E ++ ++ +++ G+G++HLLQA A ++ Sbjct: 17 TFANYYPGA-NAAALGYVERLCEAEAGWAESL----IYLWGHDGVGRSHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q R +YL + ++ I D+ L +L+ IDD+ L GK E Sbjct: 69 FEQFEERTIYLPMADLV-QYGPEIFDD--------LEQCELVCIDDLDVLVGKREWEEGL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L D+ ++++ AA + P EL+ P ++SRL Sbjct: 120 FHLFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRL 155 >gi|152987343|ref|YP_001349911.1| DNA replication initiation factor [Pseudomonas aeruginosa PA7] gi|150962501|gb|ABR84526.1| DnaA regulatory inactivator Hda [Pseudomonas aeruginosa PA7] Length = 234 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ + G+ N AL + + E ++ ++ +++ G+G++HLLQA A ++ Sbjct: 17 TFANYYPGA-NAAALGYVERLCEAEAGWAESL----IYLWGHDGVGRSHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q R +YL + ++ I D+ L +L+ IDD+ L GK E Sbjct: 69 FEQFEERTIYLPMADLV-QYGPEIFDD--------LEQCELVCIDDLDVLVGKRNWEEGL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L D+ ++++ AA + P EL+ P ++SRL Sbjct: 120 FHLFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRL 155 >gi|70731783|ref|YP_261525.1| DNA replication initiation factor [Pseudomonas fluorescens Pf-5] gi|68346082|gb|AAY93688.1| DnaA family protein [Pseudomonas fluorescens Pf-5] Length = 234 Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 20/156 (12%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 16 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VYL + R + + D+L +L+ +DD+Q + GK E Sbjct: 69 FEQLGEPAVYLPLAELLDR---------GIEILDNLEQYELVCLDDLQAVAGKADWEEAL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL ++SRL Sbjct: 120 FHLFNRLRDSGRRLLIAASTSPRELPVKLADLKSRL 155 >gi|222873098|gb|EEF10229.1| predicted protein [Populus trichocarpa] Length = 96 Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 3/86 (3%) Query: 417 MVAKHYNISRNDLLSNRRVRT-VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 +VA +N+S ++ S+ R T V R RQ+ MY++ ++ S EIGR FG RD TTV HA Sbjct: 3 IVAALFNVSGKEIRSSGRSSTQVARVRQIGMYVAHVVLGLSMKEIGRGFG-RDRTTVQHA 61 Query: 476 VRKVEKMLETDITLKKEVELLKRLIS 501 +E M + D+ + V +++R+ + Sbjct: 62 CHLIEDMRD-DVEFDQIVLVIERVTA 86 >gi|107100403|ref|ZP_01364321.1| hypothetical protein PaerPA_01001428 [Pseudomonas aeruginosa PACS2] gi|313105833|ref|ZP_07792096.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa 39016] gi|310878598|gb|EFQ37192.1| hypothetical protein PA39016_000110130 [Pseudomonas aeruginosa 39016] Length = 225 Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 77/156 (49%), Gaps = 19/156 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ + G+ N AL + + E ++ ++ +++ G+G++HLLQA A ++ Sbjct: 8 TFANYYPGA-NAAALGYVERLCEAEAGWAESL----IYLWGHDGVGRSHLLQA---ACLR 59 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q R +YL + ++ I D+ L +L+ IDD+ L GK E Sbjct: 60 FEQFEERTIYLPMADLV-QYGPEIFDD--------LEQCELVCIDDLDVLVGKREWEEGL 110 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L D+ ++++ AA + P EL+ P ++SRL Sbjct: 111 FHLFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRL 146 >gi|330811200|ref|YP_004355662.1| DNA replication initiation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379308|gb|AEA70658.1| Putative DNA replication initiation factor [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 234 Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 20/156 (12%) Query: 165 STFIE--GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +TFI +N AL + + E D+ G+T + +++ G+G+THLLQA A ++ Sbjct: 16 ATFINYYPGANAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VYL + R + + D+L +L+ +DD+Q + GK E Sbjct: 69 FEQLGEPAVYLPLAELLDR---------GVEILDNLEQYELVCLDDLQAVAGKADWEEAL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ AA P EL ++SRL Sbjct: 120 FHLFNRLRDSGRRLLIAASTSPRELPVKLADLKSRL 155 >gi|49081928|gb|AAT50364.1| PA0947 [synthetic construct] Length = 235 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/156 (27%), Positives = 76/156 (48%), Gaps = 19/156 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ + G+ N AL + + E ++ ++ +++ G+G++HLLQA A ++ Sbjct: 17 TFANYYPGA-NAAALGYVERLCEAEAGWAESL----IYLWGHDGVGRSHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q R +YL A ++ + D L +L+ IDD+ L GK E Sbjct: 69 FEQFEERTIYLP-------MADPVQ--YGPEIFDDLEQCELVCIDDLDVLVGKREWEEGL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L D+ ++++ AA + P EL+ P ++SRL Sbjct: 120 FHLFNRLRDTGRRLLLAASKSPRELQVKLPDLKSRL 155 >gi|121997504|ref|YP_001002291.1| chromosomal replication initiator, DnaA [Halorhodospira halophila SL1] gi|121588909|gb|ABM61489.1| regulatory inactivation of DnaA Hda protein [Halorhodospira halophila SL1] Length = 241 Score = 50.4 bits (119), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 43/151 (28%), Positives = 69/151 (45%), Gaps = 12/151 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++H G+GK+HLLQ A + + VYL + + A+ + D Sbjct: 43 LYLHGPHGVGKSHLLQG-ACRRVTTAGGV-AVYLPLDQLLGHGAAVL---------DGWE 91 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 L+ +DD+ L G+ Q HL N +++ +++ A +PP+EL P +RSRL Sbjct: 92 QAQLIALDDLDALDGRDEWQGAVFHLYNRVVERGGRLLFAGRQPPAELPLDLPDLRSRLG 151 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 G V + D +IL+ R A E P Sbjct: 152 WGPVVAVREPDETTCLAILRQRAAQRGLELP 182 >gi|331005288|ref|ZP_08328678.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] gi|330420898|gb|EGG95174.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] Length = 226 Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 37/221 (16%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PL + F S+ + ++A +S + D F G G +H+LQAI Sbjct: 10 PLSAEATFENLYISESSALTISALKSFIQQDER---------FFYLWGEGSGVSHVLQAI 60 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC---ALNLKDSLRNIDLLLIDDMQFLQG 273 + + P L +VY +RD A ++ L ID++++DD+Q + G Sbjct: 61 QHDN----PQLNIVYF-----------PLRDMIQYPAADVLAGLDTIDVVILDDVQCICG 105 Query: 274 KLIQHEFC--HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL-GLHDYE 330 + + E HL N L D KQ+V + P EL + SRLQ G+S L L D + Sbjct: 106 -VTEWELAVFHLYNRLRDGQKQLVIGSQIAPRELGISLADLHSRLQWGMSYSLEALSDED 164 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 K ++ I + ++ L I+++V+ + + R+L Sbjct: 165 ------KRKVLILRSQNLGLRISDDVIQFIFNHYSRDLRQL 199 >gi|295099698|emb|CBK88787.1| ATPase involved in DNA replication initiation [Eubacterium cylindroides T2-87] Length = 123 Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 4/86 (4%) Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 +Q + + + + F F+EG SN+ A A +A + G T NP+ I+ + G Sbjct: 34 QQRTNQLLKCTFNEEYTFENFVEGKSNQEAYAAC--LACCNQRG--THMFNPIMIYGNSG 89 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYL 232 LGKTHLL AI N + +P V L Sbjct: 90 LGKTHLLHAIGNYLKEERPECNVFML 115 >gi|330902626|gb|EGH33641.1| DNA replication initiation factor [Pseudomonas syringae pv. japonica str. M301072PT] Length = 207 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK-RQPNLRVVYLT 233 A+ + + E D+ G+ + +++ G+G+THLLQA A ++ Q VYL Sbjct: 1 AAVGYVERLCEADA-GWAE---SLIYLWGKDGVGRTHLLQA---ACLRFEQLGEPAVYLP 53 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAK 292 A I + + L D L +L+ +DD+Q + GK E HL N L DS + Sbjct: 54 -------LAEVIDEG--IELFDHLEQYELVCLDDLQAIVGKPDWEEALFHLFNRLRDSGR 104 Query: 293 QVVAAADRPPSELESLDPRIRSRL 316 +++ AA + P EL P ++SRL Sbjct: 105 RLLIAASKSPRELPVKLPDLKSRL 128 >gi|325282463|ref|YP_004255004.1| AFG1-family ATPase [Deinococcus proteolyticus MRP] gi|324314272|gb|ADY25387.1| AFG1-family ATPase [Deinococcus proteolyticus MRP] Length = 352 Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 5/107 (4%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKTHLL + A+ +R P RV ++ + M+ A++ A+ ++LR Sbjct: 86 LYLDGGFGVGKTHLLASTYYAARERDPGSRVALMSFQDLMY-LIGALKMPQAI---EALR 141 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 DLLLID+ + L H LL +L+ + VVA ++ P L Sbjct: 142 GYDLLLIDEFE-LDDPGNTHMANTLLEALIPAGVNVVATSNTAPGAL 187 >gi|254786961|ref|YP_003074390.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901] gi|237687481|gb|ACR14745.1| DnaA regulatory inactivator Hda [Teredinibacter turnerae T7901] Length = 236 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 19/165 (11%) Query: 154 FGSPLDSRFVFSTFIE-GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G L F+ ++ GS NR A+ A + +A + L F+ + G G +HL Sbjct: 10 LGIALHEEATFANYLAVGSGNRQAVDALEKVA-------SGASLENTFVWGAHGTGLSHL 62 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 LQA+ + + +L +YF + +R L + L ++DL+ +D ++ + Sbjct: 63 LQAVCHQASDCGRSL-------QYFPM---ADVRGYAPAALCEGLEDLDLVCLDGIEHIC 112 Query: 273 G-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 G + + HL N + D+ K +V ++ P+ L + P ++SRL Sbjct: 113 GSREWEQSLFHLFNRMRDAGKTLVFSSHVSPAALPIVLPDLKSRL 157 >gi|294668099|ref|ZP_06733206.1| ribosomal subunit interface protein [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309807|gb|EFE51050.1| ribosomal subunit interface protein [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 57 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M L+K +T S P IG FG RDHTTV+H ++ V K+ + D + ++ E L LI Sbjct: 1 MSLTKDLTSLSLPAIGEAFGGRDHTTVMHGIKAVAKLRQEDPEVAQDYEKLLLLI 55 >gi|325577813|ref|ZP_08148088.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC 33392] gi|325160558|gb|EGC72684.1| DnaA regulatory inactivator Hda [Haemophilus parainfluenzae ATCC 33392] Length = 231 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 72/141 (51%), Gaps = 13/141 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 ++ S +GKTHLL+A+ N I++Q + V L+ + F++A+ +N L Sbjct: 44 FYLWGSQSVGKTHLLRALCNEYIQQQRSAIYVPLSKSQY---FSTAVFEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + + K +V +AD+ P+ L P + SRL Sbjct: 93 QQELVCLDDLQTIIGNSEWEIALFDLFNRIKTNGKTLLVVSADQSPTSLPVKLPDLASRL 152 Query: 317 QGGVSVPLGLHDYEMRFSILK 337 + G S L E +F++LK Sbjct: 153 KWGESYQLIPLSDEQKFAVLK 173 >gi|332655401|ref|ZP_08421140.1| putative DNA replication protein DnaC [Ruminococcaceae bacterium D16] gi|332515696|gb|EGJ45307.1| putative DNA replication protein DnaC [Ruminococcaceae bacterium D16] Length = 331 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 62/128 (48%), Gaps = 6/128 (4%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALNLKDS 256 L + GLGKTHL AIA K V+Y++A + M +D+ AL ++ Sbjct: 190 LLFTGAPGLGKTHLSLAIAEGVAK--AGHLVMYVSAPHLMDQLELGKFHKDDAALEFREV 247 Query: 257 LRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE-SLDPRIRS 314 + DLL+IDD+ L + Q E L+N L++ K + + E+E + R+ S Sbjct: 248 IFGCDLLVIDDLGTELVTRYTQAEVYDLVNHRLNTGKPTIINTNLGLQEIERTYSSRVHS 307 Query: 315 RLQGGVSV 322 RL G +V Sbjct: 308 RLAGMYAV 315 >gi|118444581|ref|YP_877014.1| DNA replication protein DnaC [Clostridium novyi NT] gi|118135037|gb|ABK62081.1| DNA replication protein DnaC, putative [Clostridium novyi NT] Length = 330 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 62/126 (49%), Gaps = 5/126 (3%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L + + G GKT L IA + R NL V+Y TAE + IR L+D L Sbjct: 186 LLFYGNSGTGKTFLTHCIAKELLDR-GNL-VIYRTAEDLIKNLRE-IRLENNYELEDILI 242 Query: 259 NIDLLLIDDMQFLQ-GKLIQHEFCHLLNS-LLDSAKQVVAAADRPPSELESLDPRIRSRL 316 N DLL+IDD+ Q + E +LLN +L + K V++ S L++ RI SRL Sbjct: 243 NCDLLIIDDLGTEQISNFTKTELFNLLNKRILKNKKMVISTNYTLESLLKTYSERITSRL 302 Query: 317 QGGVSV 322 G ++ Sbjct: 303 FGNFTL 308 >gi|158423756|ref|YP_001525048.1| putative chromosomal replication initiator protein [Azorhizobium caulinodans ORS 571] gi|158330645|dbj|BAF88130.1| putative chromosomal replication initiator protein [Azorhizobium caulinodans ORS 571] Length = 192 Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/92 (31%), Positives = 46/92 (50%) Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 ET + + I V + S D+ S RR + VV R + +L+ +T ++F +IG Sbjct: 6 ETPEPSLRLIAAAVMEATGASMADIRSTRRQKEVVSQRHIVCWLAARLTGKTFRQIGVFL 65 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 G RD +TV AV +VE+ + D L V + Sbjct: 66 GGRDASTVREAVLRVEQRMAQDAALASRVSAM 97 >gi|406924|gb|AAD12524.1| Homology to initiation factor DnaA J01602 [Mycoplasma genitalium] Length = 99 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%) Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFC-HLLNSLLDSAKQVVAAADRPPSE 304 RD LK + N+DL+LIDD Q K E ++ N+L+ + KQ+V +D+ P E Sbjct: 4 RDKGIEKLKKNYGNLDLVLIDDTQIFGRKEKTLEILFNIFNNLVLNKKQIVLVSDKAPDE 63 Query: 305 LESLDPRIRSRLQGGVSVPLGLHD 328 L +D R+ SR + G+ + + H+ Sbjct: 64 LIDIDARMISRFKSGLLLKIEKHN 87 >gi|327481530|gb|AEA84840.1| DNA replication initiation factor [Pseudomonas stutzeri DSM 4166] Length = 234 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ F G+ N AL + + + G++ +++ G+G++HLLQA A ++ Sbjct: 17 TFANFYPGA-NAAALGYVERLCS-PAAGWSD---ELIYLWGQPGVGRSHLLQA-ACLRVE 70 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 + L V AE + A+ DN L +L+ +DD+ + G I E Sbjct: 71 ERGELAVYLPLAEVA--EYGPALLDN--------LEQSELVCLDDLDAVAGDAIWEEALF 120 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L D+ ++++ AAD P EL P ++SRL Sbjct: 121 HLFNRLRDAGRRLLLAADASPRELAIKLPDLQSRL 155 >gi|300940261|ref|ZP_07154858.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1] gi|300454902|gb|EFK18395.1| DnaA regulatory inactivator Hda [Escherichia coli MS 21-1] Length = 270 Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 55 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 105 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 106 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIF 155 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 156 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 194 >gi|315292418|gb|EFU51770.1| DnaA regulatory inactivator Hda [Escherichia coli MS 153-1] Length = 260 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 46 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 96 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 97 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 146 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 147 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 184 >gi|300958876|ref|ZP_07170982.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1] gi|300314478|gb|EFJ64262.1| DnaA regulatory inactivator Hda [Escherichia coli MS 175-1] Length = 274 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 60 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 110 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 111 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 160 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 161 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 198 >gi|300897622|ref|ZP_07116027.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1] gi|300997976|ref|ZP_07181907.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1] gi|301329019|ref|ZP_07222046.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1] gi|301644486|ref|ZP_07244483.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1] gi|300304077|gb|EFJ58597.1| DnaA regulatory inactivator Hda [Escherichia coli MS 200-1] gi|300358622|gb|EFJ74492.1| DnaA regulatory inactivator Hda [Escherichia coli MS 198-1] gi|300844653|gb|EFK72413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 78-1] gi|301077231|gb|EFK92037.1| DnaA regulatory inactivator Hda [Escherichia coli MS 146-1] Length = 257 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 43 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 93 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 94 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 143 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 144 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 181 >gi|301046372|ref|ZP_07193533.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1] gi|300301654|gb|EFJ58039.1| DnaA regulatory inactivator Hda [Escherichia coli MS 185-1] Length = 269 Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 54 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 104 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 105 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIF 154 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 155 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 193 >gi|330504184|ref|YP_004381053.1| DNA replication initiation factor [Pseudomonas mendocina NK-01] gi|328918469|gb|AEB59300.1| DNA replication initiation factor [Pseudomonas mendocina NK-01] Length = 234 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 19/156 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ + G+ N AL + + E D+ G+T + +++ + G+G++HLLQA A ++ Sbjct: 17 TFANYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGAEGVGRSHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VVYL ++ L D+L +L+ +DD+ + G+ E Sbjct: 69 FEQRGEAVVYLP-------LGEVVQHGP--ELLDNLELCELVCLDDLDAVAGRSDWEEGL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ A P EL P ++SRL Sbjct: 120 FHLFNRLRDSGRRLLLAGTMSPRELPIQLPDLKSRL 155 >gi|146283163|ref|YP_001173316.1| DNA replication initiation factor [Pseudomonas stutzeri A1501] gi|145571368|gb|ABP80474.1| DnaA family protein [Pseudomonas stutzeri A1501] Length = 223 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 74/155 (47%), Gaps = 17/155 (10%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ F G+ N AL + + + G++ +++ G+G++HLLQA A ++ Sbjct: 6 TFANFYPGA-NAAALGYVERLCS-PAAGWSD---ELIYLWGQRGVGRSHLLQA-ACLRVE 59 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FC 281 + L V AE + A+ DN L +L+ +DD+ + G I E Sbjct: 60 ERGELAVYLPLAEVA--EYGPALLDN--------LEQSELVCLDDLDAVAGDAIWEEALF 109 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L D+ ++++ AAD P EL P ++SRL Sbjct: 110 HLFNRLRDAGRRLLLAADASPRELAIKLPDLQSRL 144 >gi|300903508|ref|ZP_07121433.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1] gi|300930133|ref|ZP_07145555.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1] gi|300404540|gb|EFJ88078.1| DnaA regulatory inactivator Hda [Escherichia coli MS 84-1] gi|300461977|gb|EFK25470.1| DnaA regulatory inactivator Hda [Escherichia coli MS 187-1] gi|315300454|gb|EFU59684.1| DnaA regulatory inactivator Hda [Escherichia coli MS 16-3] Length = 255 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 41 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 91 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 92 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 141 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 142 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 179 >gi|300981824|ref|ZP_07175756.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1] gi|300408901|gb|EFJ92439.1| DnaA regulatory inactivator Hda [Escherichia coli MS 45-1] Length = 256 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 42 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 92 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 93 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 142 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 143 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 180 >gi|260869185|ref|YP_003235587.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128] gi|257765541|dbj|BAI37036.1| ATPase regulatory factor Hda [Escherichia coli O111:H- str. 11128] Length = 248 Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 34 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 84 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 85 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 134 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 135 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 172 >gi|300922203|ref|ZP_07138339.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1] gi|300421442|gb|EFK04753.1| DnaA regulatory inactivator Hda [Escherichia coli MS 182-1] gi|324020097|gb|EGB89316.1| DnaA regulatory inactivator Hda [Escherichia coli MS 117-3] Length = 257 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 43 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 93 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 94 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 143 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 144 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 181 >gi|324008594|gb|EGB77813.1| DnaA regulatory inactivator Hda [Escherichia coli MS 57-2] Length = 257 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 43 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 93 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 94 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 143 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 144 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 181 >gi|324011194|gb|EGB80413.1| DnaA regulatory inactivator Hda [Escherichia coli MS 60-1] Length = 274 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 59 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 109 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 110 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIF 159 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 160 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 198 >gi|300951801|ref|ZP_07165615.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1] gi|301024719|ref|ZP_07188362.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1] gi|300396450|gb|EFJ79988.1| DnaA regulatory inactivator Hda [Escherichia coli MS 69-1] gi|300448964|gb|EFK12584.1| DnaA regulatory inactivator Hda [Escherichia coli MS 116-1] Length = 256 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 42 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 92 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 93 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 142 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 143 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 180 >gi|15803019|ref|NP_289049.1| DNA replication initiation factor [Escherichia coli O157:H7 EDL933] gi|15832612|ref|NP_311385.1| DNA replication initiation factor [Escherichia coli O157:H7 str. Sakai] gi|24113824|ref|NP_708334.1| DNA replication initiation factor [Shigella flexneri 2a str. 301] gi|26248855|ref|NP_754895.1| DNA replication initiation factor [Escherichia coli CFT073] gi|30063870|ref|NP_838041.1| DNA replication initiation factor [Shigella flexneri 2a str. 2457T] gi|74313022|ref|YP_311441.1| DNA replication initiation factor [Shigella sonnei Ss046] gi|82544943|ref|YP_408890.1| DNA replication initiation factor [Shigella boydii Sb227] gi|89109302|ref|AP_003082.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. W3110] gi|91211817|ref|YP_541803.1| DNA replication initiation factor [Escherichia coli UTI89] gi|110642658|ref|YP_670388.1| DNA replication initiation factor [Escherichia coli 536] gi|110806426|ref|YP_689946.1| DNA replication initiation factor [Shigella flexneri 5 str. 8401] gi|117624680|ref|YP_853593.1| DNA replication initiation factor [Escherichia coli APEC O1] gi|157158460|ref|YP_001463818.1| DNA replication initiation factor [Escherichia coli E24377A] gi|157161957|ref|YP_001459275.1| DNA replication initiation factor [Escherichia coli HS] gi|168748446|ref|ZP_02773468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113] gi|168756267|ref|ZP_02781274.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401] gi|168761104|ref|ZP_02786111.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501] gi|168768587|ref|ZP_02793594.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486] gi|168778461|ref|ZP_02803468.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076] gi|168787841|ref|ZP_02812848.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869] gi|170019220|ref|YP_001724174.1| DNA replication initiation factor [Escherichia coli ATCC 8739] gi|170082106|ref|YP_001731426.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. DH10B] gi|170684093|ref|YP_001744679.1| DNA replication initiation factor [Escherichia coli SMS-3-5] gi|187733723|ref|YP_001881287.1| DNA replication initiation factor [Shigella boydii CDC 3083-94] gi|188495904|ref|ZP_03003174.1| DnaA family protein Hda [Escherichia coli 53638] gi|191169203|ref|ZP_03030958.1| DnaA family protein Hda [Escherichia coli B7A] gi|191172946|ref|ZP_03034481.1| DnaA family protein Hda [Escherichia coli F11] gi|193064697|ref|ZP_03045775.1| DnaA family protein Hda [Escherichia coli E22] gi|193068417|ref|ZP_03049380.1| DnaA family protein Hda [Escherichia coli E110019] gi|194427342|ref|ZP_03059892.1| DnaA family protein Hda [Escherichia coli B171] gi|194437674|ref|ZP_03069770.1| DnaA family protein Hda [Escherichia coli 101-1] gi|195936639|ref|ZP_03082021.1| DNA replication initiation factor [Escherichia coli O157:H7 str. EC4024] gi|208808962|ref|ZP_03251299.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206] gi|208813090|ref|ZP_03254419.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045] gi|208820209|ref|ZP_03260529.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042] gi|209400783|ref|YP_002271965.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115] gi|209919973|ref|YP_002294057.1| DNA replication initiation factor [Escherichia coli SE11] gi|215487788|ref|YP_002330219.1| DNA replication initiation factor [Escherichia coli O127:H6 str. E2348/69] gi|217327019|ref|ZP_03443102.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588] gi|218555021|ref|YP_002387934.1| DNA replication initiation factor [Escherichia coli IAI1] gi|218559420|ref|YP_002392333.1| DNA replication initiation factor [Escherichia coli S88] gi|218690611|ref|YP_002398823.1| DNA replication initiation factor [Escherichia coli ED1a] gi|218696123|ref|YP_002403790.1| DNA replication initiation factor [Escherichia coli 55989] gi|218700953|ref|YP_002408582.1| DNA replication initiation factor [Escherichia coli IAI39] gi|218705995|ref|YP_002413514.1| DNA replication initiation factor [Escherichia coli UMN026] gi|227887525|ref|ZP_04005330.1| DNA replication initiation protein A [Escherichia coli 83972] gi|237705002|ref|ZP_04535483.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA] gi|238901661|ref|YP_002927457.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli BW2952] gi|253772612|ref|YP_003035443.1| DNA replication initiation factor [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162470|ref|YP_003045578.1| DNA replication initiation factor [Escherichia coli B str. REL606] gi|254794441|ref|YP_003079278.1| DNA replication initiation factor [Escherichia coli O157:H7 str. TW14359] gi|256017356|ref|ZP_05431221.1| DNA replication initiation factor [Shigella sp. D9] gi|256021818|ref|ZP_05435683.1| DNA replication initiation factor [Escherichia sp. 4_1_40B] gi|260845126|ref|YP_003222904.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009] gi|260856590|ref|YP_003230481.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368] gi|261223071|ref|ZP_05937352.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli O157:H7 str. FRIK2000] gi|261259377|ref|ZP_05951910.1| ATPase regulatory factor Hda [Escherichia coli O157:H7 str. FRIK966] gi|291283716|ref|YP_003500534.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615] gi|300817738|ref|ZP_07097953.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1] gi|300820837|ref|ZP_07100987.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7] gi|300921429|ref|ZP_07137789.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1] gi|301023882|ref|ZP_07187613.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1] gi|301302849|ref|ZP_07208977.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1] gi|306814438|ref|ZP_07448600.1| DNA replication initiation factor [Escherichia coli NC101] gi|307139130|ref|ZP_07498486.1| DNA replication initiation factor [Escherichia coli H736] gi|307312510|ref|ZP_07592143.1| DnaA regulatory inactivator Hda [Escherichia coli W] gi|309794460|ref|ZP_07688883.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7] gi|331643113|ref|ZP_08344248.1| DnaA regulatory inactivator Hda [Escherichia coli H736] gi|331648141|ref|ZP_08349231.1| DnaA regulatory inactivator Hda [Escherichia coli M605] gi|331653921|ref|ZP_08354922.1| DnaA regulatory inactivator Hda [Escherichia coli M718] gi|331673947|ref|ZP_08374710.1| DnaA regulatory inactivator Hda [Escherichia coli TA280] gi|331678483|ref|ZP_08379158.1| DnaA regulatory inactivator Hda [Escherichia coli H591] gi|332278353|ref|ZP_08390766.1| DnaA family protein Hda [Shigella sp. D9] gi|12516884|gb|AAG57606.1|AE005479_4 putative DNA replication factor [Escherichia coli O157:H7 str. EDL933] gi|26109261|gb|AAN81463.1|AE016764_145 Hypothetical protein yfgE [Escherichia coli CFT073] gi|13362828|dbj|BAB36781.1| putative DNA replication factor [Escherichia coli O157:H7 str. Sakai] gi|24052912|gb|AAN44041.1| putative DNA replication factor [Shigella flexneri 2a str. 301] gi|30042125|gb|AAP17851.1| putative DNA replication factor [Shigella flexneri 2a str. 2457T] gi|73856499|gb|AAZ89206.1| putative DNA replication factor [Shigella sonnei Ss046] gi|81246354|gb|ABB67062.1| putative DNA replication factor [Shigella boydii Sb227] gi|85675427|dbj|BAA16384.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K12 substr. W3110] gi|91073391|gb|ABE08272.1| putative DNA replication factor [Escherichia coli UTI89] gi|110344250|gb|ABG70487.1| hypothetical protein YfgE [Escherichia coli 536] gi|110615974|gb|ABF04641.1| putative DNA replication factor [Shigella flexneri 5 str. 8401] gi|115513804|gb|ABJ01879.1| DNA replication initiation factor [Escherichia coli APEC O1] gi|157067637|gb|ABV06892.1| DnaA family protein Hda [Escherichia coli HS] gi|157080490|gb|ABV20198.1| DnaA family protein Hda [Escherichia coli E24377A] gi|169754148|gb|ACA76847.1| DnaA regulatory inactivator Hda [Escherichia coli ATCC 8739] gi|169889941|gb|ACB03648.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. DH10B] gi|170521811|gb|ACB19989.1| DnaA family protein Hda [Escherichia coli SMS-3-5] gi|187430715|gb|ACD09989.1| DnaA family protein Hda [Shigella boydii CDC 3083-94] gi|188017019|gb|EDU55141.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4113] gi|188491103|gb|EDU66206.1| DnaA family protein Hda [Escherichia coli 53638] gi|189003293|gb|EDU72279.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4076] gi|189356555|gb|EDU74974.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4401] gi|189362259|gb|EDU80678.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4486] gi|189368411|gb|EDU86827.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4501] gi|189372386|gb|EDU90802.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC869] gi|190900748|gb|EDV60542.1| DnaA family protein Hda [Escherichia coli B7A] gi|190906810|gb|EDV66414.1| DnaA family protein Hda [Escherichia coli F11] gi|192927580|gb|EDV82196.1| DnaA family protein Hda [Escherichia coli E22] gi|192958369|gb|EDV88809.1| DnaA family protein Hda [Escherichia coli E110019] gi|194414663|gb|EDX30935.1| DnaA family protein Hda [Escherichia coli B171] gi|194423480|gb|EDX39471.1| DnaA family protein Hda [Escherichia coli 101-1] gi|208728763|gb|EDZ78364.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4206] gi|208734367|gb|EDZ83054.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4045] gi|208740332|gb|EDZ88014.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4042] gi|209162183|gb|ACI39616.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4115] gi|209763558|gb|ACI80091.1| putative DNA replication factor [Escherichia coli] gi|209763560|gb|ACI80092.1| putative DNA replication factor [Escherichia coli] gi|209763562|gb|ACI80093.1| putative DNA replication factor [Escherichia coli] gi|209763564|gb|ACI80094.1| putative DNA replication factor [Escherichia coli] gi|209763566|gb|ACI80095.1| putative DNA replication factor [Escherichia coli] gi|209913232|dbj|BAG78306.1| conserved hypothetical protein [Escherichia coli SE11] gi|215265860|emb|CAS10269.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli O127:H6 str. E2348/69] gi|217319386|gb|EEC27811.1| DnaA family protein Hda [Escherichia coli O157:H7 str. TW14588] gi|218352855|emb|CAU98654.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli 55989] gi|218361789|emb|CAQ99388.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli IAI1] gi|218366189|emb|CAR03935.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli S88] gi|218370939|emb|CAR18760.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli IAI39] gi|218428175|emb|CAR09089.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli ED1a] gi|218433092|emb|CAR13987.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli UMN026] gi|222034204|emb|CAP76945.1| DnaA-homolog protein hda [Escherichia coli LF82] gi|226901368|gb|EEH87627.1| DNA replication initiation factor [Escherichia sp. 3_2_53FAA] gi|227835875|gb|EEJ46341.1| DNA replication initiation protein A [Escherichia coli 83972] gi|238860037|gb|ACR62035.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli BW2952] gi|242378094|emb|CAQ32867.1| regulator of DnaA that prevents premature reinitiation of DNA replication [Escherichia coli BL21(DE3)] gi|253323656|gb|ACT28258.1| DnaA regulatory inactivator Hda [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974371|gb|ACT40042.1| DNA replication initiation factor [Escherichia coli B str. REL606] gi|253978538|gb|ACT44208.1| DNA replication initiation factor [Escherichia coli BL21(DE3)] gi|254593841|gb|ACT73202.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli O157:H7 str. TW14359] gi|257755239|dbj|BAI26741.1| ATPase regulatory factor Hda [Escherichia coli O26:H11 str. 11368] gi|257760273|dbj|BAI31770.1| ATPase regulatory factor Hda [Escherichia coli O103:H2 str. 12009] gi|260448425|gb|ACX38847.1| DnaA regulatory inactivator Hda [Escherichia coli DH1] gi|281179547|dbj|BAI55877.1| conserved hypothetical protein [Escherichia coli SE15] gi|281601897|gb|ADA74881.1| DnaA-like protein hda [Shigella flexneri 2002017] gi|284922443|emb|CBG35530.1| DnaA-homolog protein [Escherichia coli 042] gi|290763589|gb|ADD57550.1| DnaA-like protein hda [Escherichia coli O55:H7 str. CB9615] gi|294493697|gb|ADE92453.1| DnaA family protein Hda [Escherichia coli IHE3034] gi|299880636|gb|EFI88847.1| DnaA regulatory inactivator Hda [Escherichia coli MS 196-1] gi|300411663|gb|EFJ94973.1| DnaA regulatory inactivator Hda [Escherichia coli MS 115-1] gi|300526590|gb|EFK47659.1| DnaA regulatory inactivator Hda [Escherichia coli MS 119-7] gi|300529726|gb|EFK50788.1| DnaA regulatory inactivator Hda [Escherichia coli MS 107-1] gi|300841784|gb|EFK69544.1| DnaA regulatory inactivator Hda [Escherichia coli MS 124-1] gi|305851832|gb|EFM52284.1| DNA replication initiation factor [Escherichia coli NC101] gi|306907433|gb|EFN37937.1| DnaA regulatory inactivator Hda [Escherichia coli W] gi|307554516|gb|ADN47291.1| DnaA family protein Hda [Escherichia coli ABU 83972] gi|307625952|gb|ADN70256.1| DNA replication initiation factor [Escherichia coli UM146] gi|308121916|gb|EFO59178.1| DnaA regulatory inactivator Hda [Escherichia coli MS 145-7] gi|309702774|emb|CBJ02105.1| DnaA-homolog protein [Escherichia coli ETEC H10407] gi|312947069|gb|ADR27896.1| DNA replication initiation factor [Escherichia coli O83:H1 str. NRG 857C] gi|315061814|gb|ADT76141.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli W] gi|315137119|dbj|BAJ44278.1| DnaA-like protein hda [Escherichia coli DH1] gi|315256513|gb|EFU36481.1| DnaA regulatory inactivator Hda [Escherichia coli MS 85-1] gi|320176256|gb|EFW51317.1| Chromosomal replication initiator protein DnaA [Shigella dysenteriae CDC 74-1112] gi|320180482|gb|EFW55413.1| Chromosomal replication initiator protein DnaA [Shigella boydii ATCC 9905] gi|320188828|gb|EFW63487.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC1212] gi|320196328|gb|EFW70952.1| Chromosomal replication initiator protein DnaA [Escherichia coli WV_060327] gi|320200057|gb|EFW74646.1| Chromosomal replication initiator protein DnaA [Escherichia coli EC4100B] gi|320641000|gb|EFX10484.1| DNA replication initiation factor [Escherichia coli O157:H7 str. G5101] gi|320646282|gb|EFX15209.1| DNA replication initiation factor [Escherichia coli O157:H- str. 493-89] gi|320651787|gb|EFX20167.1| DNA replication initiation factor [Escherichia coli O157:H- str. H 2687] gi|320657173|gb|EFX24982.1| DNA replication initiation factor [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662779|gb|EFX30111.1| DNA replication initiation factor [Escherichia coli O55:H7 str. USDA 5905] gi|320667583|gb|EFX34498.1| DNA replication initiation factor [Escherichia coli O157:H7 str. LSU-61] gi|323377605|gb|ADX49873.1| DnaA regulatory inactivator Hda [Escherichia coli KO11] gi|326340291|gb|EGD64095.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1125] gi|330912266|gb|EGH40776.1| chromosomal replication initiator protein DnaA [Escherichia coli AA86] gi|331039911|gb|EGI12131.1| DnaA regulatory inactivator Hda [Escherichia coli H736] gi|331043001|gb|EGI15141.1| DnaA regulatory inactivator Hda [Escherichia coli M605] gi|331048770|gb|EGI20846.1| DnaA regulatory inactivator Hda [Escherichia coli M718] gi|331069220|gb|EGI40612.1| DnaA regulatory inactivator Hda [Escherichia coli TA280] gi|331074943|gb|EGI46263.1| DnaA regulatory inactivator Hda [Escherichia coli H591] gi|332100705|gb|EGJ04051.1| DnaA family protein Hda [Shigella sp. D9] gi|332766306|gb|EGJ96516.1| dnaA regulatory inactivator Hda [Shigella flexneri 2930-71] Length = 248 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 34 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 84 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 85 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 134 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 135 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 172 >gi|82777875|ref|YP_404224.1| DNA replication initiation factor [Shigella dysenteriae Sd197] gi|81242023|gb|ABB62733.1| putative DNA replication factor [Shigella dysenteriae Sd197] Length = 248 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 34 FASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 84 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 85 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIFD 134 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 135 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 172 >gi|226524737|ref|NP_416991.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. MG1655] gi|293405931|ref|ZP_06649923.1| DNA replication initiation factor [Escherichia coli FVEC1412] gi|293410891|ref|ZP_06654467.1| DnaA regulatory inactivator Hda [Escherichia coli B354] gi|293446849|ref|ZP_06663271.1| DnaA regulatory inactivator Hda [Escherichia coli B088] gi|298381680|ref|ZP_06991279.1| DNA replication initiation factor [Escherichia coli FVEC1302] gi|269849566|sp|A7ZPT9|HDA_ECO24 RecName: Full=DnaA-homolog protein hda gi|269849567|sp|B7UGN4|HDA_ECO27 RecName: Full=DnaA-homolog protein hda gi|269849568|sp|B7MHX7|HDA_ECO45 RecName: Full=DnaA-homolog protein hda gi|269849569|sp|B7LCN6|HDA_ECO55 RecName: Full=DnaA-homolog protein hda gi|269849570|sp|P69933|HDA_ECO57 RecName: Full=DnaA-homolog protein hda gi|269849571|sp|B5Z033|HDA_ECO5E RecName: Full=DnaA-homolog protein hda gi|269849572|sp|B7NQN5|HDA_ECO7I RecName: Full=DnaA-homolog protein hda gi|269849573|sp|B7MYC3|HDA_ECO81 RecName: Full=DnaA-homolog protein hda gi|269849574|sp|B7M7K0|HDA_ECO8A RecName: Full=DnaA-homolog protein hda gi|269849575|sp|C4ZX71|HDA_ECOBW RecName: Full=DnaA-homolog protein hda gi|269849576|sp|B1XAX1|HDA_ECODH RecName: Full=DnaA-homolog protein hda gi|269849577|sp|A8A2Y8|HDA_ECOHS RecName: Full=DnaA-homolog protein hda gi|269849578|sp|A1ADY9|HDA_ECOK1 RecName: Full=DnaA-homolog protein hda gi|269849579|sp|Q0TEZ2|HDA_ECOL5 RecName: Full=DnaA-homolog protein hda gi|269849580|sp|P69932|HDA_ECOL6 RecName: Full=DnaA-homolog protein hda gi|269849581|sp|B1IWG4|HDA_ECOLC RecName: Full=DnaA-homolog protein hda gi|269849582|sp|P69931|HDA_ECOLI RecName: Full=DnaA-homolog protein hda gi|269849583|sp|B7N678|HDA_ECOLU RecName: Full=DnaA-homolog protein hda gi|269849584|sp|B6I568|HDA_ECOSE RecName: Full=DnaA-homolog protein hda gi|269849585|sp|B1LNE6|HDA_ECOSM RecName: Full=DnaA-homolog protein hda gi|269849586|sp|Q1R8P2|HDA_ECOUT RecName: Full=DnaA-homolog protein hda gi|269849588|sp|B2TXS1|HDA_SHIB3 RecName: Full=DnaA-homolog protein hda gi|269849589|sp|Q31XZ6|HDA_SHIBS RecName: Full=DnaA-homolog protein hda gi|269849590|sp|Q32D72|HDA_SHIDS RecName: Full=DnaA-homolog protein hda gi|269849591|sp|Q0T224|HDA_SHIF8 RecName: Full=DnaA-homolog protein hda gi|269849592|sp|P69934|HDA_SHIFL RecName: Full=DnaA-homolog protein hda gi|269849593|sp|Q3YZ56|HDA_SHISS RecName: Full=DnaA-homolog protein hda gi|226510964|gb|AAC75549.2| ATPase regulatory factor involved in DnaA inactivation [Escherichia coli str. K-12 substr. MG1655] gi|291323679|gb|EFE63107.1| DnaA regulatory inactivator Hda [Escherichia coli B088] gi|291428139|gb|EFF01166.1| DNA replication initiation factor [Escherichia coli FVEC1412] gi|291471359|gb|EFF13843.1| DnaA regulatory inactivator Hda [Escherichia coli B354] gi|298279122|gb|EFI20636.1| DNA replication initiation factor [Escherichia coli FVEC1302] Length = 233 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 18 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 68 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 69 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIF 118 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 119 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 157 >gi|332978505|gb|EGK15216.1| regulatory inactivation of DnaA Hda protein [Psychrobacter sp. 1501(2011)] Length = 270 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 40/146 (27%), Positives = 72/146 (49%), Gaps = 15/146 (10%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 + ++I+ S GKTHLL AI + ++ + + L+ + + N + + Sbjct: 40 IGQMYIYGSAATGKTHLLSAICESYMEMDKS--AICLSLKELL---------NTDVGVLA 88 Query: 256 SLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 SL + DL+ IDD++ ++G + Q HL+N + Q++ AA P +EL P + + Sbjct: 89 SLESFDLVAIDDLEAIRGNREWQEAIFHLINRSREGQGQLIFAAKTPATELPFELPDLLT 148 Query: 315 RL--QGGVSVPLGLHDYEMRFSILKN 338 RL VP G HD R ++L++ Sbjct: 149 RLIQSPAFRVPEG-HDIADRKAMLES 173 >gi|187775811|ref|ZP_02798598.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196] gi|189405751|ref|ZP_02823873.2| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508] gi|194432059|ref|ZP_03064348.1| DnaA family protein Hda [Shigella dysenteriae 1012] gi|293415759|ref|ZP_06658402.1| DnaA regulatory inactivator Hda [Escherichia coli B185] gi|312967773|ref|ZP_07781988.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75] gi|312973265|ref|ZP_07787437.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70] gi|331658634|ref|ZP_08359578.1| DnaA regulatory inactivator Hda [Escherichia coli TA206] gi|331664053|ref|ZP_08364963.1| DnaA regulatory inactivator Hda [Escherichia coli TA143] gi|331669238|ref|ZP_08370086.1| DnaA regulatory inactivator Hda [Escherichia coli TA271] gi|331684138|ref|ZP_08384734.1| DnaA regulatory inactivator Hda [Escherichia coli H299] gi|187770564|gb|EDU34408.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC4196] gi|189378688|gb|EDU97104.1| DnaA family protein Hda [Escherichia coli O157:H7 str. EC508] gi|194419588|gb|EDX35668.1| DnaA family protein Hda [Shigella dysenteriae 1012] gi|291433407|gb|EFF06386.1| DnaA regulatory inactivator Hda [Escherichia coli B185] gi|310331860|gb|EFP99095.1| dnaA regulatory inactivator Hda [Escherichia coli 1827-70] gi|312287970|gb|EFR15875.1| dnaA regulatory inactivator Hda [Escherichia coli 2362-75] gi|313650956|gb|EFS15356.1| dnaA regulatory inactivator Hda [Shigella flexneri 2a str. 2457T] gi|315615739|gb|EFU96371.1| dnaA regulatory inactivator Hda [Escherichia coli 3431] gi|320185194|gb|EFW59974.1| Chromosomal replication initiator protein DnaA [Shigella flexneri CDC 796-83] gi|323156100|gb|EFZ42259.1| dnaA regulatory inactivator Hda [Escherichia coli EPECa14] gi|323159349|gb|EFZ45334.1| dnaA regulatory inactivator Hda [Escherichia coli E128010] gi|323169062|gb|EFZ54739.1| dnaA regulatory inactivator Hda [Shigella sonnei 53G] gi|323170235|gb|EFZ55888.1| dnaA regulatory inactivator Hda [Escherichia coli LT-68] gi|323177383|gb|EFZ62971.1| dnaA regulatory inactivator Hda [Escherichia coli 1180] gi|323184446|gb|EFZ69821.1| dnaA regulatory inactivator Hda [Escherichia coli 1357] gi|323188212|gb|EFZ73505.1| dnaA regulatory inactivator Hda [Escherichia coli RN587/1] gi|323936388|gb|EGB32678.1| DnaA regulatory inactivator Hda [Escherichia coli E1520] gi|323941245|gb|EGB37430.1| DnaA regulatory inactivator Hda [Escherichia coli E482] gi|323944717|gb|EGB40784.1| DnaA regulatory inactivator Hda [Escherichia coli H120] gi|323949483|gb|EGB45371.1| DnaA regulatory inactivator Hda [Escherichia coli H252] gi|323955733|gb|EGB51491.1| DnaA regulatory inactivator Hda [Escherichia coli H263] gi|323961290|gb|EGB56902.1| DnaA regulatory inactivator Hda [Escherichia coli H489] gi|323967940|gb|EGB63352.1| DnaA regulatory inactivator Hda [Escherichia coli M863] gi|323970981|gb|EGB66230.1| DnaA regulatory inactivator Hda [Escherichia coli TA007] gi|323977326|gb|EGB72412.1| DnaA regulatory inactivator Hda [Escherichia coli TW10509] gi|324118160|gb|EGC12057.1| DnaA regulatory inactivator Hda [Escherichia coli E1167] gi|326344976|gb|EGD68720.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1044] gi|327252146|gb|EGE63818.1| dnaA regulatory inactivator Hda [Escherichia coli STEC_7v] gi|331054299|gb|EGI26326.1| DnaA regulatory inactivator Hda [Escherichia coli TA206] gi|331059852|gb|EGI31829.1| DnaA regulatory inactivator Hda [Escherichia coli TA143] gi|331064432|gb|EGI36343.1| DnaA regulatory inactivator Hda [Escherichia coli TA271] gi|331079090|gb|EGI50292.1| DnaA regulatory inactivator Hda [Escherichia coli H299] gi|332089745|gb|EGI94846.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 155-74] gi|332092792|gb|EGI97861.1| dnaA regulatory inactivator Hda [Shigella boydii 3594-74] gi|332344316|gb|AEE57650.1| DNA-A regulatory inactivation protein [Escherichia coli UMNK88] gi|332755140|gb|EGJ85505.1| dnaA regulatory inactivator Hda [Shigella flexneri 4343-70] gi|332755541|gb|EGJ85905.1| dnaA regulatory inactivator Hda [Shigella flexneri K-671] gi|332756537|gb|EGJ86888.1| dnaA regulatory inactivator Hda [Shigella flexneri 2747-71] gi|333001633|gb|EGK21201.1| dnaA regulatory inactivator Hda [Shigella flexneri VA-6] gi|333001784|gb|EGK21350.1| dnaA regulatory inactivator Hda [Shigella flexneri K-218] gi|333002286|gb|EGK21850.1| dnaA regulatory inactivator Hda [Shigella flexneri K-272] gi|333016108|gb|EGK35440.1| dnaA regulatory inactivator Hda [Shigella flexneri K-227] gi|333016366|gb|EGK35697.1| dnaA regulatory inactivator Hda [Shigella flexneri K-304] Length = 225 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 10 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 60 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 61 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIF 110 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 111 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 149 >gi|163942312|ref|YP_001647196.1| primosomal protein DnaI [Bacillus weihenstephanensis KBAB4] gi|163864509|gb|ABY45568.1| Primosomal DnaI domain protein [Bacillus weihenstephanensis KBAB4] Length = 312 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 11/94 (11%) Query: 184 AEVDSHGYTTVRLNP---------LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A +D+ G T LN L+++ G+GKT+LL AIAN +++ + +VY Sbjct: 141 ARIDAIGATNEFLNTYEPGEKAQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE 200 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 F+ S+I+DN D+++ + +L++DD+ Sbjct: 201 --FLREIKSSIQDNSISGKIDAVKRVQVLMLDDI 232 >gi|218548071|ref|YP_002381862.1| DNA replication initiation factor [Escherichia fergusonii ATCC 35469] gi|218355612|emb|CAQ88223.1| ATPase regulatory factor involved in DnaA inactivation [Escherichia fergusonii ATCC 35469] gi|324112986|gb|EGC06962.1| DnaA regulatory inactivator Hda [Escherichia fergusonii B253] gi|325496474|gb|EGC94333.1| DNA replication initiation factor [Escherichia fergusonii ECD227] Length = 241 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 26 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 76 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + + L+ ID+++ + G +L + Sbjct: 77 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEQLSLVCIDNIECIAGDELWEMAIF 126 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 127 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 165 >gi|297200940|ref|ZP_06918337.1| replication initiator protein [Streptomyces sviceus ATCC 29083] gi|297147774|gb|EFH28730.1| replication initiator protein [Streptomyces sviceus ATCC 29083] Length = 58 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%) Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-ELLKRL 499 MYL + +T S P+IG FG RDHTTV+HA RK+ ++ ++ +V EL R+ Sbjct: 1 MYLCRELTDLSLPKIGALFGGRDHTTVMHADRKIRNLMAERRSIYNQVTELTNRI 55 >gi|229013782|ref|ZP_04170910.1| hypothetical protein bmyco0001_41910 [Bacillus mycoides DSM 2048] gi|229062262|ref|ZP_04199583.1| hypothetical protein bcere0026_43320 [Bacillus cereus AH603] gi|229135414|ref|ZP_04264201.1| hypothetical protein bcere0014_43090 [Bacillus cereus BDRD-ST196] gi|229169305|ref|ZP_04297015.1| hypothetical protein bcere0007_42550 [Bacillus cereus AH621] gi|228614068|gb|EEK71183.1| hypothetical protein bcere0007_42550 [Bacillus cereus AH621] gi|228647975|gb|EEL04023.1| hypothetical protein bcere0014_43090 [Bacillus cereus BDRD-ST196] gi|228716990|gb|EEL68671.1| hypothetical protein bcere0026_43320 [Bacillus cereus AH603] gi|228747451|gb|EEL97326.1| hypothetical protein bmyco0001_41910 [Bacillus mycoides DSM 2048] Length = 312 Score = 47.4 bits (111), Expect = 0.006, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 51/94 (54%), Gaps = 11/94 (11%) Query: 184 AEVDSHGYTTVRLNP---------LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A +D+ G T LN L+++ G+GKT+LL AIAN +++ + +VY Sbjct: 141 ARIDAIGATNEFLNTYEPGKKAQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE 200 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 F+ S+I+DN D+++ + +L++DD+ Sbjct: 201 --FLREIKSSIQDNSISGKIDAVKRVQVLMLDDI 232 >gi|75676411|ref|YP_318832.1| ATPase involved in DNA replication initiation [Nitrobacter winogradskyi Nb-255] gi|74421281|gb|ABA05480.1| ATPase involved in DNA replication initiation [Nitrobacter winogradskyi Nb-255] Length = 330 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 47/89 (52%), Gaps = 3/89 (3%) Query: 414 IQRMVAKHYNISRNDLLS-NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I R+VA+ + + +++ R RQVAMYL+ + SF IGR F DRD TTV Sbjct: 27 IARLVAEEFELDAAAVIAPTRGAPRAAYARQVAMYLAHVGFALSFEAIGRAF-DRDRTTV 85 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 HA R VE + D L + + L+ + + Sbjct: 86 SHACRVVEDSRD-DAGLDRRLAALEAMCA 113 >gi|269849587|sp|B7LKE6|HDA_ESCF3 RecName: Full=DnaA-homolog protein hda Length = 233 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 18 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 68 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + + L+ ID+++ + G +L + Sbjct: 69 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEQLSLVCIDNIECIAGDELWEMAIF 118 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 119 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 157 >gi|254513812|ref|ZP_05125873.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3] gi|219676055|gb|EED32420.1| DnaA regulatory inactivator Hda [gamma proteobacterium NOR5-3] Length = 235 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 41/141 (29%), Positives = 66/141 (46%), Gaps = 15/141 (10%) Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 F+H + G GK+HLLQA+ +A+ VYL + ++ +L L + Sbjct: 53 FLHGAAGEGKSHLLQALCHATDG------AVYLPLAVLL--------ESPPSDLFQDLES 98 Query: 260 IDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 LL +DD+ + G+ E HL+N + + AA RP ++L + SRL G Sbjct: 99 SSLLALDDLDVIAGRREWEEALFHLINRARAAQCPLWMAARRPANDLGLQLADLSSRLAG 158 Query: 319 GVSVPLGLHDYEMRFSILKNR 339 GV+ L D + +IL+ R Sbjct: 159 GVTWALSAADDSDKQAILQFR 179 >gi|94498878|ref|ZP_01305416.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65] gi|94428510|gb|EAT13482.1| hypothetical protein RED65_08829 [Oceanobacter sp. RED65] Length = 232 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 17/181 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +FI+ G G +HLLQA + + + +L VYL E + ++ A+ +SL Sbjct: 46 IFIYGESGCGTSHLLQAACHEA--QTHDLNSVYLPLEELV-EYSPAVF--------ESLE 94 Query: 259 NIDLLLIDDMQFLQGKLIQHEFC-HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 N+ L+ +D+MQ + G E HL N + D+ ++ AA+ L ++SRL Sbjct: 95 NLPLIALDNMQAIAGLPAWEEAVFHLFNRVRDNGGHIIMAANDSIEGLGIKLADLKSRLH 154 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ L E + + LK R + L + ++V +V R + ++ A NQ Sbjct: 155 WGLVYELPELTEEDKMAALKLR-----AHNRGLELGDDVAKYVVRQMEGHMDKMFEALNQ 209 Query: 378 L 378 L Sbjct: 210 L 210 >gi|315288098|gb|EFU47498.1| DnaA regulatory inactivator Hda [Escherichia coli MS 110-3] Length = 230 Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 15 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 65 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 66 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIF 115 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 116 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 154 >gi|161502351|ref|YP_001569463.1| DNA replication initiation factor [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189042483|sp|A9MHP3|HDA_SALAR RecName: Full=DnaA-homolog protein hda gi|160863698|gb|ABX20321.1| hypothetical protein SARI_00384 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 241 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 26 TFASFWPGD-NASLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 76 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 77 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECVAGDELWEMAIF 126 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 127 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 165 >gi|16761414|ref|NP_457031.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765816|ref|NP_461431.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140889|ref|NP_804231.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181063|ref|YP_217480.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167991801|ref|ZP_02572900.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232045|ref|ZP_02657103.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168243269|ref|ZP_02668201.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261467|ref|ZP_02683440.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466758|ref|ZP_02700612.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817751|ref|ZP_02829751.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446139|ref|YP_002041757.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449619|ref|YP_002046559.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472246|ref|ZP_03078230.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735099|ref|YP_002115562.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250088|ref|YP_002147449.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263709|ref|ZP_03163783.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198242062|ref|YP_002216565.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388824|ref|ZP_03215436.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929434|ref|ZP_03220508.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353601|ref|YP_002227402.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857909|ref|YP_002244560.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213160889|ref|ZP_03346599.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425351|ref|ZP_03358101.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213582544|ref|ZP_03364370.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213616332|ref|ZP_03372158.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213647175|ref|ZP_03377228.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855522|ref|ZP_03383762.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582970|ref|YP_002636768.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913635|ref|ZP_04657472.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289829340|ref|ZP_06546952.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|57012732|sp|Q7CQ21|HDA_SALTY RecName: Full=DnaA-homolog protein hda gi|57012734|sp|Q8XEQ0|HDA_SALTI RecName: Full=DnaA-homolog protein hda gi|75481740|sp|Q57LL3|HDA_SALCH RecName: Full=DnaA-homolog protein hda gi|226740573|sp|B5F171|HDA_SALA4 RecName: Full=DnaA-homolog protein hda gi|226740574|sp|B5FQI8|HDA_SALDC RecName: Full=DnaA-homolog protein hda gi|226740575|sp|B5R558|HDA_SALEP RecName: Full=DnaA-homolog protein hda gi|226740576|sp|B5RCW8|HDA_SALG2 RecName: Full=DnaA-homolog protein hda gi|226740577|sp|B4TD71|HDA_SALHS RecName: Full=DnaA-homolog protein hda gi|226740578|sp|B4T0M5|HDA_SALNS RecName: Full=DnaA-homolog protein hda gi|226740580|sp|B4TR72|HDA_SALSV RecName: Full=DnaA-homolog protein hda gi|254800192|sp|C0PYR0|HDA_SALPC RecName: Full=DnaA-homolog protein hda gi|269969427|sp|A9N2Y3|HDA_SALPB RecName: Full=DnaA-homolog protein hda gi|25356046|pir||AF0818 conserved hypothetical protein STY2737 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421038|gb|AAL21390.1| putative ATPase involved in DNA replication initiation [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503714|emb|CAD02698.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29136514|gb|AAO68080.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128696|gb|AAX66399.1| putative ATPase involved in DNA replication initiation [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194404802|gb|ACF65024.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407923|gb|ACF68142.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458610|gb|EDX47449.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194710601|gb|ACF89822.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630731|gb|EDX49323.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213791|gb|ACH51188.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241964|gb|EDY24584.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197936578|gb|ACH73911.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605922|gb|EDZ04467.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321153|gb|EDZ06353.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273382|emb|CAR38354.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205329842|gb|EDZ16606.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333601|gb|EDZ20365.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337580|gb|EDZ24344.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205344978|gb|EDZ31742.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349619|gb|EDZ36250.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709712|emb|CAR34062.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467497|gb|ACN45327.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247694|emb|CBG25521.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994607|gb|ACY89492.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159048|emb|CBW18561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913484|dbj|BAJ37458.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086990|emb|CBY96760.1| Chromosomal replication initiator protein dnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322613765|gb|EFY10704.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619492|gb|EFY16368.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624997|gb|EFY21826.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629560|gb|EFY26336.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634010|gb|EFY30747.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635552|gb|EFY32263.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639900|gb|EFY36576.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644394|gb|EFY40935.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649152|gb|EFY45592.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655242|gb|EFY51551.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658289|gb|EFY54555.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664289|gb|EFY60486.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669457|gb|EFY65606.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673184|gb|EFY69290.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676575|gb|EFY72643.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683326|gb|EFY79340.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685788|gb|EFY81781.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715546|gb|EFZ07117.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130826|gb|ADX18256.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323192535|gb|EFZ77764.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199580|gb|EFZ84671.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204644|gb|EFZ89642.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208092|gb|EFZ93037.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210185|gb|EFZ95086.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217051|gb|EGA01773.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220610|gb|EGA05059.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225470|gb|EGA09701.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229260|gb|EGA13384.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235425|gb|EGA19509.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237389|gb|EGA21452.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245144|gb|EGA29145.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248847|gb|EGA32773.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253134|gb|EGA36966.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258704|gb|EGA42365.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260609|gb|EGA44219.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266385|gb|EGA49873.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269784|gb|EGA53234.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624320|gb|EGE30665.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628698|gb|EGE35041.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989424|gb|AEF08407.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 241 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 26 TFASFWPGD-NASLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 76 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 77 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECVAGDELWEMAIF 126 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 127 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 165 >gi|146308015|ref|YP_001188480.1| DNA replication initiation factor [Pseudomonas mendocina ymp] gi|145576216|gb|ABP85748.1| regulatory inactivation of DnaA Hda protein [Pseudomonas mendocina ymp] Length = 234 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 76/156 (48%), Gaps = 19/156 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ + G+ N AL + + E D+ G+T + +++ + G+G++HLLQA A ++ Sbjct: 17 TFANYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGAEGVGRSHLLQA---ACLR 68 Query: 223 -RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 Q VVYL ++ L D+L +L+ +DD+ + G+ E Sbjct: 69 FEQRGDAVVYLP-------LTEVVQHGP--ELLDNLELCELVCLDDLDAVAGRSDWEEGL 119 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 HL N L DS ++++ A P EL P ++SRL Sbjct: 120 FHLFNRLRDSGRRLLLAGTMSPRELPIQLPDLKSRL 155 >gi|56412621|ref|YP_149696.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361556|ref|YP_002141192.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81599733|sp|Q5PL41|HDA_SALPA RecName: Full=DnaA-homolog protein hda gi|226740579|sp|B5BB08|HDA_SALPK RecName: Full=DnaA-homolog protein hda gi|56126878|gb|AAV76384.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093032|emb|CAR58469.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 241 Score = 47.0 bits (110), Expect = 0.008, Method: Compositional matrix adjust. Identities = 42/158 (26%), Positives = 76/158 (48%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ A G G++HLL A A A + + Sbjct: 27 FASFWPGD-NASLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELSQ 77 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 78 RGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECVAGDELWEMAIFD 127 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 128 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 165 >gi|88706615|ref|ZP_01104318.1| DnaA-like protein hda [Congregibacter litoralis KT71] gi|88699111|gb|EAQ96227.1| DnaA-like protein hda [Congregibacter litoralis KT71] Length = 234 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 16/135 (11%) Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 F+H + G GK+HLLQA+ +A+ +YL A+ +N L Sbjct: 52 FLHGAAGEGKSHLLQALCHATAG------ALYLPLAELRGAHPGALLEN--------LET 97 Query: 260 IDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 LL +D+++ + G E HL+N + + AA P +L P +RSRL G Sbjct: 98 AALLALDNLEHIAGDGEWEEALFHLMNRARAAQCPLWVAARSPAMDLGIELPDLRSRLGG 157 Query: 319 GVSVPL-GLHDYEMR 332 GV+ + +D EMR Sbjct: 158 GVTWAMTPANDEEMR 172 >gi|161612751|ref|YP_001586716.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197301043|ref|ZP_02663254.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205356906|ref|ZP_02343245.2| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|161362115|gb|ABX65883.1| hypothetical protein SPAB_00450 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|197288946|gb|EDY28319.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|205325251|gb|EDZ13090.1| DnaA regulatory inactivator Hda [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|321222802|gb|EFX47873.1| Chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 225 Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 10 TFASFWPGD-NASLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 60 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 61 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECVAGDELWEMAIF 110 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 111 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 149 >gi|23099611|ref|NP_693077.1| primosomal protein DnaI [Oceanobacillus iheyensis HTE831] gi|22777841|dbj|BAC14112.1| primosome component (helicase loader) [Oceanobacillus iheyensis HTE831] Length = 308 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ S G+GKT+LL AIAN K + ++ ++Y+ F+ S+ +D+ D + Sbjct: 163 LYLYGSFGVGKTYLLGAIANELKKLEYSISLIYMPE--FVREIKSSFKDDSFNEKVDFFK 220 Query: 259 NIDLLLIDDM 268 D+L++DDM Sbjct: 221 KADILMLDDM 230 >gi|229076080|ref|ZP_04209048.1| hypothetical protein bcere0024_42770 [Bacillus cereus Rock4-18] gi|229099039|ref|ZP_04229973.1| hypothetical protein bcere0020_42620 [Bacillus cereus Rock3-29] gi|229105206|ref|ZP_04235855.1| hypothetical protein bcere0019_43400 [Bacillus cereus Rock3-28] gi|229118069|ref|ZP_04247428.1| hypothetical protein bcere0017_43380 [Bacillus cereus Rock1-3] gi|228665292|gb|EEL20775.1| hypothetical protein bcere0017_43380 [Bacillus cereus Rock1-3] gi|228678132|gb|EEL32360.1| hypothetical protein bcere0019_43400 [Bacillus cereus Rock3-28] gi|228684267|gb|EEL38211.1| hypothetical protein bcere0020_42620 [Bacillus cereus Rock3-29] gi|228706943|gb|EEL59148.1| hypothetical protein bcere0024_42770 [Bacillus cereus Rock4-18] Length = 312 Score = 46.6 bits (109), Expect = 0.010, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|93006678|ref|YP_581115.1| putative DnaA family protein [Psychrobacter cryohalolentis K5] gi|92394356|gb|ABE75631.1| regulatory inactivation of DnaA Hda protein [Psychrobacter cryohalolentis K5] Length = 270 Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 15/148 (10%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 + L++ S GK+HLL AI + I+ + + L+ + + +N+ Sbjct: 41 IGQLYLFGSPATGKSHLLSAICESFIEMDKS--AICLSLNELI---------HTDVNVLS 89 Query: 256 SLRNIDLLLIDDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 SL N L+ IDD++ + Q Q HL+N + +Q++ AA++P SEL + + Sbjct: 90 SLENFSLIAIDDLEVIEQNSQWQEALFHLINRSREGQRQLLFAANKPASELPFQLRDLLT 149 Query: 315 RLQGGVS--VPLGLHDYEMRFSILKNRL 340 RL S VP G HD+ R ++L++ L Sbjct: 150 RLAQAPSFKVPTG-HDFADREALLQSIL 176 >gi|229158181|ref|ZP_04286248.1| hypothetical protein bcere0010_43590 [Bacillus cereus ATCC 4342] gi|228625139|gb|EEK81899.1| hypothetical protein bcere0010_43590 [Bacillus cereus ATCC 4342] Length = 312 Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|196042359|ref|ZP_03109629.1| primosomal protein DnaI [Bacillus cereus NVH0597-99] gi|196047748|ref|ZP_03114946.1| primosomal protein DnaI [Bacillus cereus 03BB108] gi|225866555|ref|YP_002751933.1| primosomal protein DnaI [Bacillus cereus 03BB102] gi|228935885|ref|ZP_04098695.1| hypothetical protein bthur0009_43300 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229093675|ref|ZP_04224775.1| hypothetical protein bcere0021_43990 [Bacillus cereus Rock3-42] gi|229186834|ref|ZP_04313989.1| hypothetical protein bcere0004_43750 [Bacillus cereus BGSC 6E1] gi|196021416|gb|EDX60125.1| primosomal protein DnaI [Bacillus cereus 03BB108] gi|196026803|gb|EDX65440.1| primosomal protein DnaI [Bacillus cereus NVH0597-99] gi|225787533|gb|ACO27750.1| primosomal protein DnaI [Bacillus cereus 03BB102] gi|228596571|gb|EEK54236.1| hypothetical protein bcere0004_43750 [Bacillus cereus BGSC 6E1] gi|228689762|gb|EEL43569.1| hypothetical protein bcere0021_43990 [Bacillus cereus Rock3-42] gi|228823653|gb|EEM69475.1| hypothetical protein bthur0009_43300 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 312 Score = 46.6 bits (109), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|217962057|ref|YP_002340627.1| primosomal protein DnaI [Bacillus cereus AH187] gi|229141303|ref|ZP_04269841.1| hypothetical protein bcere0013_43960 [Bacillus cereus BDRD-ST26] gi|229198726|ref|ZP_04325424.1| hypothetical protein bcere0001_42500 [Bacillus cereus m1293] gi|217062910|gb|ACJ77160.1| primosomal protein DnaI [Bacillus cereus AH187] gi|228584748|gb|EEK42868.1| hypothetical protein bcere0001_42500 [Bacillus cereus m1293] gi|228642084|gb|EEK98377.1| hypothetical protein bcere0013_43960 [Bacillus cereus BDRD-ST26] gi|324328471|gb|ADY23731.1| primosomal protein DnaI [Bacillus thuringiensis serovar finitimus YBT-020] Length = 312 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|42783755|ref|NP_981002.1| primosomal protein DnaI [Bacillus cereus ATCC 10987] gi|42739685|gb|AAS43610.1| primosomal protein DnaI [Bacillus cereus ATCC 10987] Length = 312 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|229021033|ref|ZP_04177703.1| hypothetical protein bcere0030_54720 [Bacillus cereus AH1273] gi|229026027|ref|ZP_04182410.1| hypothetical protein bcere0029_43120 [Bacillus cereus AH1272] gi|228735243|gb|EEL85855.1| hypothetical protein bcere0029_43120 [Bacillus cereus AH1272] gi|228740265|gb|EEL90593.1| hypothetical protein bcere0030_54720 [Bacillus cereus AH1273] Length = 312 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|301061445|ref|ZP_07202215.1| bacterial DnaA protein helix-turn-helix domain protein [delta proteobacterium NaphS2] gi|300444484|gb|EFK08479.1| bacterial DnaA protein helix-turn-helix domain protein [delta proteobacterium NaphS2] Length = 173 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 3/88 (3%) Query: 405 ETKKMR--IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 E+KK+ ++ I+R + Y + N LLS+RR + PR VA++L + + EIGR Sbjct: 73 ESKKLAPDVKKIKRAICDAYGVDENSLLSSRRG-VLNEPRDVAVFLVRRLRGEKLEEIGR 131 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLK 490 +FG +++V A+ K+++ + + L+ Sbjct: 132 QFGIAKYSSVSSAIEKMKREVSANRKLR 159 >gi|228917217|ref|ZP_04080774.1| hypothetical protein bthur0012_44290 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842418|gb|EEM87509.1| hypothetical protein bthur0012_44290 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 312 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|49481336|ref|YP_038624.1| primosomal protein DnaI [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140930|ref|YP_085899.1| primosomal protein DnaI [Bacillus cereus E33L] gi|118479726|ref|YP_896877.1| primosomal protein DnaI [Bacillus thuringiensis str. Al Hakam] gi|218905805|ref|YP_002453639.1| primosomal protein DnaI [Bacillus cereus AH820] gi|228929625|ref|ZP_04092643.1| hypothetical protein bthur0010_43090 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948303|ref|ZP_04110586.1| hypothetical protein bthur0007_44290 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229124144|ref|ZP_04253336.1| hypothetical protein bcere0016_44290 [Bacillus cereus 95/8201] gi|301056084|ref|YP_003794295.1| primosomal protein DnaI [Bacillus anthracis CI] gi|49332892|gb|AAT63538.1| DNA replication primosomal protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974399|gb|AAU15949.1| DNA replication primosomal protein [Bacillus cereus E33L] gi|118418951|gb|ABK87370.1| replicative DNA helicase loader DnaI [Bacillus thuringiensis str. Al Hakam] gi|218538371|gb|ACK90769.1| primosomal protein DnaI [Bacillus cereus AH820] gi|228659446|gb|EEL15094.1| hypothetical protein bcere0016_44290 [Bacillus cereus 95/8201] gi|228811290|gb|EEM57628.1| hypothetical protein bthur0007_44290 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830012|gb|EEM75631.1| hypothetical protein bthur0010_43090 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|300378253|gb|ADK07157.1| primosomal protein DnaI [Bacillus cereus biovar anthracis str. CI] Length = 312 Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|228987825|ref|ZP_04147934.1| hypothetical protein bthur0001_44930 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771873|gb|EEM20330.1| hypothetical protein bthur0001_44930 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 312 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|30264648|ref|NP_847025.1| primosomal protein DnaI [Bacillus anthracis str. Ames] gi|47530119|ref|YP_021468.1| primosomal protein DnaI [Bacillus anthracis str. 'Ames Ancestor'] gi|49187469|ref|YP_030721.1| primosomal protein DnaI [Bacillus anthracis str. Sterne] gi|65321946|ref|ZP_00394905.1| COG1484: DNA replication protein [Bacillus anthracis str. A2012] gi|165871494|ref|ZP_02216141.1| primosomal protein DnaI [Bacillus anthracis str. A0488] gi|167636726|ref|ZP_02395010.1| primosomal protein DnaI [Bacillus anthracis str. A0442] gi|167642082|ref|ZP_02400305.1| primosomal protein DnaI [Bacillus anthracis str. A0193] gi|170689718|ref|ZP_02880892.1| primosomal protein DnaI [Bacillus anthracis str. A0465] gi|170708690|ref|ZP_02899128.1| primosomal protein DnaI [Bacillus anthracis str. A0389] gi|177653129|ref|ZP_02935416.1| primosomal protein DnaI [Bacillus anthracis str. A0174] gi|190569438|ref|ZP_03022319.1| primosomal protein DnaI [Bacillus anthracis Tsiankovskii-I] gi|227817362|ref|YP_002817371.1| primosomal protein DnaI [Bacillus anthracis str. CDC 684] gi|229601987|ref|YP_002868857.1| primosomal protein DnaI [Bacillus anthracis str. A0248] gi|254686929|ref|ZP_05150787.1| primosomal protein DnaI [Bacillus anthracis str. CNEVA-9066] gi|254720895|ref|ZP_05182686.1| primosomal protein DnaI [Bacillus anthracis str. A1055] gi|254736686|ref|ZP_05194392.1| primosomal protein DnaI [Bacillus anthracis str. Western North America USA6153] gi|254741724|ref|ZP_05199411.1| primosomal protein DnaI [Bacillus anthracis str. Kruger B] gi|254754679|ref|ZP_05206714.1| primosomal protein DnaI [Bacillus anthracis str. Vollum] gi|254757511|ref|ZP_05209538.1| primosomal protein DnaI [Bacillus anthracis str. Australia 94] gi|30259323|gb|AAP28511.1| primosomal protein DnaI [Bacillus anthracis str. Ames] gi|47505267|gb|AAT33943.1| primosomal protein DnaI [Bacillus anthracis str. 'Ames Ancestor'] gi|49181396|gb|AAT56772.1| primosomal protein DnaI [Bacillus anthracis str. Sterne] gi|164712791|gb|EDR18321.1| primosomal protein DnaI [Bacillus anthracis str. A0488] gi|167509957|gb|EDR85380.1| primosomal protein DnaI [Bacillus anthracis str. A0193] gi|167527844|gb|EDR90678.1| primosomal protein DnaI [Bacillus anthracis str. A0442] gi|170126370|gb|EDS95259.1| primosomal protein DnaI [Bacillus anthracis str. A0389] gi|170666321|gb|EDT17110.1| primosomal protein DnaI [Bacillus anthracis str. A0465] gi|172081653|gb|EDT66724.1| primosomal protein DnaI [Bacillus anthracis str. A0174] gi|190559451|gb|EDV13455.1| primosomal protein DnaI [Bacillus anthracis Tsiankovskii-I] gi|227002445|gb|ACP12188.1| primosomal protein DnaI [Bacillus anthracis str. CDC 684] gi|229266395|gb|ACQ48032.1| primosomal protein DnaI [Bacillus anthracis str. A0248] Length = 312 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|148244412|ref|YP_001219106.1| DnaA family protein [Candidatus Vesicomyosocius okutanii HA] gi|146326239|dbj|BAF61382.1| DnaA family protein [Candidatus Vesicomyosocius okutanii HA] Length = 224 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 33/225 (14%) Query: 154 FGSPL--DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 G PL +S+ + S FI G+ N Q + + + +T R +FI + GKTH Sbjct: 4 LGLPLLLNSKILLSNFI-GNKN-------QQVLDFVNRLFTQKRSAVVFISGTKSSGKTH 55 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LLQ A +++ ++ L V Y+ I+ + L ++D + ID++ L Sbjct: 56 LLQGCAFSALDKK--LNVAYID-----------IKQELPKGIISDLTSVDWICIDNVDCL 102 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 Q F L N ++ +++ AA P+EL L +++RL V+ L + + E Sbjct: 103 SITQQQALF-DLYNRNKPTSVKLIIAASSSPNELNLL-KDLKTRLSLAVAFTLEVLNDEQ 160 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + I++ ++A D +NIN +V ++ + + R+L+ N Sbjct: 161 KILIIERKMA-----DKNININSKVYHYLFKVFS---RDLNDILN 197 >gi|229163569|ref|ZP_04291519.1| hypothetical protein bcere0009_43350 [Bacillus cereus R309803] gi|228619951|gb|EEK76827.1| hypothetical protein bcere0009_43350 [Bacillus cereus R309803] Length = 312 Score = 46.2 bits (108), Expect = 0.012, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|90423283|ref|YP_531653.1| chromosomal replication initiator, DnaA-like [Rhodopseudomonas palustris BisB18] gi|90105297|gb|ABD87334.1| Chromosomal replication initiator, DnaA-like [Rhodopseudomonas palustris BisB18] Length = 131 Score = 46.2 bits (108), Expect = 0.013, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 2/58 (3%) Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RQ+AMYLS I SF IGR FG RD TTV HA R VE + D+ + + L+R+ Sbjct: 57 RQIAMYLSHIGFGLSFEAIGRLFG-RDRTTVAHACRVVEDSRD-DVWMDGRLATLERI 112 >gi|310825776|ref|YP_003958133.1| hypothetical protein ELI_0145 [Eubacterium limosum KIST612] gi|308737510|gb|ADO35170.1| hypothetical protein ELI_0145 [Eubacterium limosum KIST612] Length = 323 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 36/117 (30%), Positives = 61/117 (52%), Gaps = 6/117 (5%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI-RDNCALN-LKDSLRNIDLL 263 G+GKT + +ANA I + N V+Y+TA + + S I DN +N + L DLL Sbjct: 189 GVGKTFMSNCVANALIGQGYN--VIYITAAHLVQDIQSKIFNDNIPINEIYSPLFTADLL 246 Query: 264 LIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRP-PSELESLDPRIRSRLQG 318 +IDD + + ++N+ L K+++ + + P LE+ D R+ SR++G Sbjct: 247 IIDDFGAEFYSDFSKKQLFEVINTRLQEHKKIILSTNLTMPQILENYDERLTSRIRG 303 >gi|157144575|ref|YP_001451894.1| DNA replication initiation factor [Citrobacter koseri ATCC BAA-895] gi|167008785|sp|A8AD95|HDA_CITK8 RecName: Full=DnaA-homolog protein hda gi|157081780|gb|ABV11458.1| hypothetical protein CKO_00295 [Citrobacter koseri ATCC BAA-895] Length = 241 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 77/159 (48%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ + G G++HLL A A A + Sbjct: 26 TFASFWPGD-NASLLAALQNVLRQEHSGY-------IYLWSREGAGRSHLLHA-ACAELS 76 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 77 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECVAGDELWEMAIF 126 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L+ P + SRL G Sbjct: 127 DLYNRILESGKTRLLITGDRPPRQLKLGLPDLASRLDWG 165 >gi|213027208|ref|ZP_03341655.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 168 Score = 46.2 bits (108), Expect = 0.013, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 10 TFASFWPGD-NASLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 60 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 61 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECVAGDELWEMAIF 110 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 111 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 149 >gi|222098040|ref|YP_002532097.1| primosomal protein dnai [Bacillus cereus Q1] gi|221242098|gb|ACM14808.1| DNA replication primosomal protein [Bacillus cereus Q1] Length = 264 Score = 46.2 bits (108), Expect = 0.014, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN Sbjct: 113 KVQGLYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 170 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 171 DAVKRVQVLMLDDI 184 >gi|304440042|ref|ZP_07399935.1| replicative DNA helicase [Peptoniphilus duerdenii ATCC BAA-1640] gi|325849663|ref|ZP_08170866.1| hypothetical protein HMPREF9246_1699 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|304371534|gb|EFM25147.1| replicative DNA helicase [Peptoniphilus duerdenii ATCC BAA-1640] gi|325480004|gb|EGC83082.1| hypothetical protein HMPREF9246_1699 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 275 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F F+ +G + +VA A+S ++ D+ G L H VG G Sbjct: 73 CFSSPLQHQYNFERFLNEKGQAYKVAYNYAKSFEQMKEDNVG--------LLFHGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 KT+L +IAN I+R Q ++++ L+ + ++ D + + D+L NI LL++DD Sbjct: 125 KTYLACSIANELIEREQVKVKIMNLSQVINQIQKSAFKLD--SNEIIDNLSNIPLLILDD 182 Query: 268 M 268 + Sbjct: 183 L 183 >gi|169824682|ref|YP_001692293.1| hypothetical protein FMG_0985 [Finegoldia magna ATCC 29328] gi|167831487|dbj|BAG08403.1| DNA replication protein [Finegoldia magna ATCC 29328] Length = 275 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/121 (30%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F F+ +G + +VA A+S ++ D+ G L H VG G Sbjct: 73 CFSSPLQHQYNFERFLNEKGQAYKVAYNYAKSFEQMKEDNVG--------LLFHGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 KT+L +IAN I+R Q ++++ L+ + ++ D + + D+L NI LL++DD Sbjct: 125 KTYLACSIANELIEREQVKVKIMNLSQVINQIQKSAFKLD--SNEIIDNLSNIPLLILDD 182 Query: 268 M 268 + Sbjct: 183 L 183 >gi|304393956|ref|ZP_07375880.1| bacterial DnaA protein helix-turn-helix domain containing protein [Ahrensia sp. R2A130] gi|303293931|gb|EFL88307.1| bacterial DnaA protein helix-turn-helix domain containing protein [Ahrensia sp. R2A130] Length = 288 Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 4/67 (5%) Query: 415 QRMVAK---HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 QR++AK + ++ +D+L RR + R RQ Y + S P+IGR G RDHT+ Sbjct: 87 QRLLAKVADKHELTVDDMLGPRRFVEIARARQEFYYRATDELGASQPQIGRWVG-RDHTS 145 Query: 472 VLHAVRK 478 VLH +RK Sbjct: 146 VLHGIRK 152 >gi|228954847|ref|ZP_04116867.1| hypothetical protein bthur0006_42140 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228804836|gb|EEM51435.1| hypothetical protein bthur0006_42140 [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 312 Score = 45.8 bits (107), Expect = 0.017, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN D+++ Sbjct: 165 LYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKIDAVK 222 Query: 259 NIDLLLIDDM 268 + +L++DD+ Sbjct: 223 RVQVLMLDDI 232 >gi|228960848|ref|ZP_04122481.1| hypothetical protein bthur0005_43030 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798744|gb|EEM45724.1| hypothetical protein bthur0005_43030 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 312 Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN D+++ Sbjct: 165 LYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKIDAVK 222 Query: 259 NIDLLLIDDM 268 + +L++DD+ Sbjct: 223 RVQVLMLDDI 232 >gi|30022654|ref|NP_834285.1| primosomal protein DnaI [Bacillus cereus ATCC 14579] gi|206969644|ref|ZP_03230598.1| primosomal protein DnaI [Bacillus cereus AH1134] gi|228923322|ref|ZP_04086610.1| hypothetical protein bthur0011_43010 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|229048286|ref|ZP_04193854.1| hypothetical protein bcere0027_42540 [Bacillus cereus AH676] gi|229072080|ref|ZP_04205289.1| hypothetical protein bcere0025_42460 [Bacillus cereus F65185] gi|229081830|ref|ZP_04214322.1| hypothetical protein bcere0023_44580 [Bacillus cereus Rock4-2] gi|229112043|ref|ZP_04241586.1| hypothetical protein bcere0018_42860 [Bacillus cereus Rock1-15] gi|229129862|ref|ZP_04258828.1| hypothetical protein bcere0015_43020 [Bacillus cereus BDRD-Cer4] gi|229147138|ref|ZP_04275496.1| hypothetical protein bcere0012_42740 [Bacillus cereus BDRD-ST24] gi|229180897|ref|ZP_04308232.1| hypothetical protein bcere0005_42410 [Bacillus cereus 172560W] gi|229192779|ref|ZP_04319737.1| hypothetical protein bcere0002_44300 [Bacillus cereus ATCC 10876] gi|296505050|ref|YP_003666750.1| primosomal protein DnaI [Bacillus thuringiensis BMB171] gi|29898212|gb|AAP11486.1| Primosomal protein dnaI [Bacillus cereus ATCC 14579] gi|206735332|gb|EDZ52500.1| primosomal protein DnaI [Bacillus cereus AH1134] gi|228590618|gb|EEK48479.1| hypothetical protein bcere0002_44300 [Bacillus cereus ATCC 10876] gi|228602454|gb|EEK59940.1| hypothetical protein bcere0005_42410 [Bacillus cereus 172560W] gi|228636248|gb|EEK92720.1| hypothetical protein bcere0012_42740 [Bacillus cereus BDRD-ST24] gi|228653553|gb|EEL09425.1| hypothetical protein bcere0015_43020 [Bacillus cereus BDRD-Cer4] gi|228671366|gb|EEL26667.1| hypothetical protein bcere0018_42860 [Bacillus cereus Rock1-15] gi|228701418|gb|EEL53912.1| hypothetical protein bcere0023_44580 [Bacillus cereus Rock4-2] gi|228711014|gb|EEL62980.1| hypothetical protein bcere0025_42460 [Bacillus cereus F65185] gi|228723011|gb|EEL74388.1| hypothetical protein bcere0027_42540 [Bacillus cereus AH676] gi|228836276|gb|EEM81629.1| hypothetical protein bthur0011_43010 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296326102|gb|ADH09030.1| primosomal protein DnaI [Bacillus thuringiensis BMB171] Length = 312 Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN D+++ Sbjct: 165 LYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKIDAVK 222 Query: 259 NIDLLLIDDM 268 + +L++DD+ Sbjct: 223 RVQVLMLDDI 232 >gi|218233313|ref|YP_002369374.1| primosomal protein DnaI [Bacillus cereus B4264] gi|229152773|ref|ZP_04280956.1| hypothetical protein bcere0011_43050 [Bacillus cereus m1550] gi|218161270|gb|ACK61262.1| primosomal protein DnaI [Bacillus cereus B4264] gi|228630593|gb|EEK87239.1| hypothetical protein bcere0011_43050 [Bacillus cereus m1550] Length = 312 Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN D+++ Sbjct: 165 LYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKIDAVK 222 Query: 259 NIDLLLIDDM 268 + +L++DD+ Sbjct: 223 RVQVLMLDDI 232 >gi|75763047|ref|ZP_00742835.1| Primosomal protein dnaI [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218899731|ref|YP_002448142.1| primosomal protein DnaI [Bacillus cereus G9842] gi|228903095|ref|ZP_04067231.1| hypothetical protein bthur0014_42610 [Bacillus thuringiensis IBL 4222] gi|228910402|ref|ZP_04074217.1| hypothetical protein bthur0013_45490 [Bacillus thuringiensis IBL 200] gi|228967675|ref|ZP_04128695.1| hypothetical protein bthur0004_44670 [Bacillus thuringiensis serovar sotto str. T04001] gi|74489464|gb|EAO52892.1| Primosomal protein dnaI [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|218544371|gb|ACK96765.1| primosomal protein DnaI [Bacillus cereus G9842] gi|228792008|gb|EEM39590.1| hypothetical protein bthur0004_44670 [Bacillus thuringiensis serovar sotto str. T04001] gi|228849168|gb|EEM94007.1| hypothetical protein bthur0013_45490 [Bacillus thuringiensis IBL 200] gi|228856504|gb|EEN01028.1| hypothetical protein bthur0014_42610 [Bacillus thuringiensis IBL 4222] Length = 312 Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN D+++ Sbjct: 165 LYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKIDAVK 222 Query: 259 NIDLLLIDDM 268 + +L++DD+ Sbjct: 223 RVQVLMLDDI 232 >gi|228941757|ref|ZP_04104304.1| hypothetical protein bthur0008_43930 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974681|ref|ZP_04135247.1| hypothetical protein bthur0003_44340 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981275|ref|ZP_04141575.1| hypothetical protein bthur0002_44360 [Bacillus thuringiensis Bt407] gi|228778475|gb|EEM26742.1| hypothetical protein bthur0002_44360 [Bacillus thuringiensis Bt407] gi|228785084|gb|EEM33097.1| hypothetical protein bthur0003_44340 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817969|gb|EEM64047.1| hypothetical protein bthur0008_43930 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326942361|gb|AEA18257.1| primosomal protein DnaI [Bacillus thuringiensis serovar chinensis CT-43] Length = 312 Score = 45.8 bits (107), Expect = 0.018, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ G+GKT+LL AIAN +++ + +VY F+ S+I+DN D+++ Sbjct: 165 LYLYGKFGVGKTYLLGAIANELARKKISSMLVYFPE--FLREIKSSIQDNSIGEKIDAVK 222 Query: 259 NIDLLLIDDM 268 + +L++DD+ Sbjct: 223 RVQVLMLDDI 232 >gi|283786112|ref|YP_003365977.1| DnaA-homolog protein [Citrobacter rodentium ICC168] gi|282949566|emb|CBG89184.1| DnaA-homolog protein [Citrobacter rodentium ICC168] Length = 248 Score = 45.8 bits (107), Expect = 0.019, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 75/158 (47%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q++ + GY +++ + G G++HLL A A A + + Sbjct: 34 FASFWPGD-NASLLAALQNVLRQEHSGY-------IYLWSREGAGRSHLLHA-ACAELSQ 84 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 + + V Y+ + W + D + + L+ ID+++ + G +L + Sbjct: 85 RGD-AVGYVPLDKRTWFVPEVL---------DGMEQLSLVCIDNIECVAGDELWEMAIFD 134 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 135 LYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 172 >gi|229823048|ref|ZP_04449117.1| hypothetical protein GCWU000282_00343 [Catonella morbi ATCC 51271] gi|229787487|gb|EEP23601.1| hypothetical protein GCWU000282_00343 [Catonella morbi ATCC 51271] Length = 312 Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 1/70 (1%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+I G+GKT+LL A+AN ++ + V +L F ++IRDN D ++ Sbjct: 160 LYITGPYGVGKTYLLGALANHLVEEE-GATVTFLHFPTFASDMRASIRDNSTQANLDKVK 218 Query: 259 NIDLLLIDDM 268 +D+L++DDM Sbjct: 219 QVDVLMLDDM 228 >gi|308271134|emb|CBX27743.1| hypothetical protein N47_C18010 [uncultured Desulfobacterium sp.] Length = 341 Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust. Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 1/86 (1%) Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 +V ++Y + D+ +RR + PR V +YL +++ + +IG+ F T+V + Sbjct: 237 VVCEYYAVDEKDIYKSRR-GSYNEPRNVLIYLIRVLRRDNMKQIGQYFNIDKSTSVSSII 295 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 +V+K L+TD +LKK V+ L ++++ Sbjct: 296 ERVKKQLQTDKSLKKRVDELINMVNK 321 >gi|169823790|ref|YP_001691401.1| DNA replication protein DnaC [Finegoldia magna ATCC 29328] gi|167830595|dbj|BAG07511.1| putative DNA replication protein [Finegoldia magna ATCC 29328] Length = 325 Score = 45.4 bits (106), Expect = 0.023, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 25/198 (12%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 VF + DS +G S R + A + S YT L ++ VG GKT+L Sbjct: 143 VFDTKKDSS-------QGMSQRENMQAISENLKYYSKNYTK-NAKSLLLYGQVGTGKTYL 194 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL----NLKDSLRNIDLLLIDDM 268 L +A I + V+YL+A + + S N ++D + N D+L+IDD+ Sbjct: 195 LSCMAKEII--ENGFSVIYLSAMQLLKQLFSIRYQNFNEAPQPEVEDIIYNCDVLMIDDL 252 Query: 269 QFLQGKLIQHE-----FCHLLNSLLDSAKQVVAAADRPPSELES-LDPRIRSRLQGGVSV 322 G E LLN + + K + + + +L+S D RI SR++G + Sbjct: 253 ----GTENSTETNISLLFDLLNYRIQNQKTTIISTNIDLDDLQSQYDQRISSRIKGEF-I 307 Query: 323 PLGLHDYEMRFSILKNRL 340 P+ ++R KN L Sbjct: 308 PIQFFGRDIREERFKNGL 325 >gi|160872450|ref|ZP_02062582.1| DnaA regulatory inactivator Hda [Rickettsiella grylli] gi|159121249|gb|EDP46587.1| DnaA regulatory inactivator Hda [Rickettsiella grylli] Length = 231 Score = 45.4 bits (106), Expect = 0.024, Method: Compositional matrix adjust. Identities = 46/177 (25%), Positives = 75/177 (42%), Gaps = 22/177 (12%) Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + Q I P+ P D+ F F G N V L Q + Y ++I Sbjct: 1 MSTQLILPI--QPPDAH-SFENFYRGQ-NEVLLDCLQQFSLRRGESY-------IYIWGH 49 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G G THLLQA + + +Q V YL S ++ N + + L ++D++ Sbjct: 50 PGAGCTHLLQACCHTA--QQYGFSVAYLP--------LSTLKKNNSSEILRGLESVDMVC 99 Query: 265 IDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 IDD++ + + E H N L + ++ ++ AA P +L P + SRL G+ Sbjct: 100 IDDLESVVNESSWEESLFHFYNRLQEQSRYLLIAAKHNPHQLNFSLPDLISRLSSGI 156 >gi|304320213|ref|YP_003853856.1| ATPase [Parvularcula bermudensis HTCC2503] gi|303299116|gb|ADM08715.1| ATPase [Parvularcula bermudensis HTCC2503] Length = 133 Score = 45.1 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Query: 415 QRMVAKHYNISRNDLLSNRRVRT-VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 +R+VA + +S ++++ R + + RQVAMYL+ ++ ++ E+ FG R+ TTV Sbjct: 19 RRLVAGEFGVSEDEMMGASRAKAPIAFARQVAMYLAHVVYQLTYNEVAEAFG-RERTTVA 77 Query: 474 HAVRKVE 480 HA VE Sbjct: 78 HACAVVE 84 >gi|94995076|ref|YP_603174.1| hypothetical protein MGAS10750_Spy1680 [Streptococcus pyogenes MGAS10750] gi|94548584|gb|ABF38630.1| Replicative DNA helicase [Streptococcus pyogenes MGAS10750] Length = 275 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F ++ +G + RVA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYTFEKYLNEKGQAYRVAYNYAKSFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 KT+L +IAN I+R Q ++++ L+ + ++ D + + D+L NI LL++DD Sbjct: 125 KTYLACSIANELIERKQVKVKIMNLSQVINQIQKSAFKLD--SNEIIDNLSNIPLLILDD 182 Query: 268 M 268 + Sbjct: 183 L 183 >gi|53803270|ref|YP_114933.1| DnaA domain-containing protein [Methylococcus capsulatus str. Bath] gi|53757031|gb|AAU91322.1| DnaA domain protein [Methylococcus capsulatus str. Bath] Length = 232 Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust. Identities = 33/145 (22%), Positives = 66/145 (45%), Gaps = 12/145 (8%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ GLGKTHL+ A + + + L A+ C + + + Sbjct: 44 LYLWGDTGLGKTHLVNAACREAFHNGRSAACLPL-----------ALIGECGPAVLEGME 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 N +L+ +DD+ + G+ + + L N++ D+ ++ A PP+EL P +++RL Sbjct: 93 NQNLVCLDDIDTIAGRDDWERQLFGLFNAMRDAGNTLLITATAPPAELPVALPDLKTRLA 152 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAI 342 G+ + L E + + L+ R + Sbjct: 153 WGLVLRLHPLTDEHKLAALERRAGM 177 >gi|170767200|ref|ZP_02901653.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627] gi|170123534|gb|EDS92465.1| DnaA regulatory inactivator Hda [Escherichia albertii TW07627] Length = 225 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 10 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 60 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + + L+ ID+++ + G +L + Sbjct: 61 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEQLSLVCIDNIECIAGDELWEMAIF 110 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S +++ DRPP +L P + SRL G Sbjct: 111 DLYNRILESGNTRLLITGDRPPRQLNLGLPDLASRLDWG 149 >gi|172058203|ref|YP_001814663.1| primosomal DnaI domain-containing protein [Exiguobacterium sibiricum 255-15] gi|171990724|gb|ACB61646.1| Primosomal DnaI domain protein [Exiguobacterium sibiricum 255-15] Length = 305 Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust. Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 24/142 (16%) Query: 164 FSTFIEGSSNR-VALTAAQSIAEVDSHGYTTVR----LNPLFIHASVGLGKTHLLQAIAN 218 FS F +++R +AL AA S TVR + L++H S G+GKT+LL AI N Sbjct: 126 FSDFDLTTTDRKLALRAA-------SQFLNTVRSKQQVKGLYLHGSFGVGKTYLLAAIGN 178 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF-------- 270 A K + + + + A F+ IR + +S + + +LLIDD+ Sbjct: 179 ALKKER--VATILVHAPGFVSEAKRRIRSDSFDTFLESFQTVPVLLIDDIGAESISPWVR 236 Query: 271 --LQGKLIQHEFCHLLNSLLDS 290 L G ++Q+ H L +L S Sbjct: 237 DELFGIILQYRMMHRLPTLFSS 258 >gi|205374564|ref|ZP_03227360.1| primosomal protein DnaI [Bacillus coahuilensis m4-4] Length = 310 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 3/71 (4%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK-DSL 257 L+IH G+GK+++L AIAN ++ + +VY+ F SA+ D+ N K D++ Sbjct: 163 LYIHGKFGVGKSYILGAIANELATKKISSYIVYVPE--FFREMKSALGDSGKFNDKLDAV 220 Query: 258 RNIDLLLIDDM 268 +N +L++DD+ Sbjct: 221 KNAPVLMLDDI 231 >gi|160946182|ref|ZP_02093393.1| hypothetical protein PEPMIC_00144 [Parvimonas micra ATCC 33270] gi|158447705|gb|EDP24700.1| hypothetical protein PEPMIC_00144 [Parvimonas micra ATCC 33270] Length = 326 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 15/132 (11%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-EYF--MWRFA-SAIRDNCALNLK 254 +F + G GKT+ A+ N + R R ++TA E+F M ++ S RD L + Sbjct: 180 IFFYGKSGAGKTYFASAMVNYMLDRGK--RACFITATEFFELMSNYSYSFYRDKKELQDR 237 Query: 255 -DSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDS----AKQVVAAADRPPSEL-ESL 308 D +RN+D L+IDD L +++ L+SLLD + ++ +L E Sbjct: 238 IDFIRNVDFLVIDD---LGNEILSKNNNSFLSSLLDYRIERGLNTIITSNLSEYDLAECY 294 Query: 309 DPRIRSRLQGGV 320 D R+ SR++G Sbjct: 295 DSRVASRIRGNF 306 >gi|307266325|ref|ZP_07547864.1| IstB domain protein ATP-binding protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326391189|ref|ZP_08212733.1| IstB domain protein ATP-binding protein [Thermoanaerobacter ethanolicus JW 200] gi|306918632|gb|EFN48867.1| IstB domain protein ATP-binding protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325992758|gb|EGD51206.1| IstB domain protein ATP-binding protein [Thermoanaerobacter ethanolicus JW 200] Length = 327 Score = 45.1 bits (105), Expect = 0.028, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALN-LKD 255 LF + GLGKT L IA + R + V+Y TA + R D + N + Sbjct: 185 LFFYGDSGLGKTFLANCIAKELLDRGKS--VIYRTAPDLIEGLRINKLNADGSSYNEYLE 242 Query: 256 SLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP-RI 312 L+ DLL+IDD+ + + +Q EF ++LN+ L K+ + + + P SE+ ++ P RI Sbjct: 243 LLKECDLLIIDDLGTESITAFSLQ-EFFNILNTRLLLGKKFIISTNLPLSEIMAIYPERI 301 Query: 313 RSRLQG 318 SR+ G Sbjct: 302 YSRIFG 307 >gi|229032223|ref|ZP_04188196.1| hypothetical protein bcere0028_42650 [Bacillus cereus AH1271] gi|229175287|ref|ZP_04302802.1| hypothetical protein bcere0006_43670 [Bacillus cereus MM3] gi|228608119|gb|EEK65426.1| hypothetical protein bcere0006_43670 [Bacillus cereus MM3] gi|228729003|gb|EEL80006.1| hypothetical protein bcere0028_42650 [Bacillus cereus AH1271] Length = 312 Score = 45.1 bits (105), Expect = 0.030, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ G+GKT+LL A+AN +++ + +VY F+ S+I+DN Sbjct: 161 KVQGLYLYGKFGVGKTYLLGAMANELAQKKISSMLVYFPE--FLREIKSSIQDNSIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|168187318|ref|ZP_02621953.1| DNA replication protein DnaC [Clostridium botulinum C str. Eklund] gi|169294749|gb|EDS76882.1| DNA replication protein DnaC [Clostridium botulinum C str. Eklund] Length = 330 Score = 45.1 bits (105), Expect = 0.031, Method: Compositional matrix adjust. Identities = 44/126 (34%), Positives = 61/126 (48%), Gaps = 5/126 (3%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L + + G GKT L IA + R NL V+Y TAE + IR L+D L Sbjct: 186 LLFYGNSGTGKTFLTHCIAKELLDR-GNL-VIYRTAEDLIKNLRE-IRLENNNELEDLLI 242 Query: 259 NIDLLLIDDMQFLQ-GKLIQHEFCHLLNS-LLDSAKQVVAAADRPPSELESLDPRIRSRL 316 N DLL+IDD+ Q + E +LLN LL + K V++ L++ RI SRL Sbjct: 243 NCDLLIIDDLGTEQITNFTKTELFNLLNKRLLKNRKMVISTNYTLELLLKTYSERITSRL 302 Query: 317 QGGVSV 322 G ++ Sbjct: 303 FGNFTL 308 >gi|210624087|ref|ZP_03294187.1| hypothetical protein CLOHIR_02143 [Clostridium hiranonis DSM 13275] gi|210153220|gb|EEA84226.1| hypothetical protein CLOHIR_02143 [Clostridium hiranonis DSM 13275] Length = 328 Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 14/146 (9%) Query: 199 LFIHASVGLGKTHLLQAIANA------SIKRQPNLRVVYLTAEY-FMWRFASAIRDNCAL 251 LF H + GLGKT++ IA A S+ Q R++ + Y F S I D Sbjct: 188 LFFHGATGLGKTYMCNCIAKALLDQGYSVIYQTAFRILEILENYKFRKDEDSRINDENYK 247 Query: 252 NLKDSLRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLD 309 NL D DLL+IDD+ L E +++N+ L + K+++ + + S++ E Sbjct: 248 NLFDC----DLLIIDDLGTELNNSFSSGEIFNIVNTRLLAGKKIIISTNLDSSKIVELYS 303 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSI 335 R SR+ G + L +++R+ + Sbjct: 304 QRTFSRIVGNFRI-LEFLGHDLRWEV 328 >gi|229916383|ref|YP_002885029.1| Primosomal DnaI domain protein [Exiguobacterium sp. AT1b] gi|229467812|gb|ACQ69584.1| Primosomal DnaI domain protein [Exiguobacterium sp. AT1b] Length = 304 Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 12/106 (11%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++N L++H S G+GKT+LL AIAN + ++ + + A F+ IR + Sbjct: 155 KVNGLYLHGSFGVGKTYLLAAIANEL--KVADIETILVHAPGFVSEAKRKIRTESFDSFL 212 Query: 255 DSLRNIDLLLIDDMQF----------LQGKLIQHEFCHLLNSLLDS 290 S +++ +LLIDD+ L G ++Q+ H L +L S Sbjct: 213 TSFQHVPVLLIDDIGAEAISPWVRDELFGIILQYRMMHRLPTLYSS 258 >gi|332087942|gb|EGI93067.1| dnaA regulatory inactivator Hda [Shigella boydii 5216-82] Length = 225 Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 75/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ A G G++HLL A A A + Sbjct: 10 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWAREGAGRSHLLHA-ACAELS 60 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + D + ++ L+ ID+++ + G +L + Sbjct: 61 QRGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECIAGDELWEMAIF 110 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N + +S K +++ DRPP +L P + SRL G Sbjct: 111 DLYNRIQESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 149 >gi|325478389|gb|EGC81504.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii ACS-065-V-Col13] Length = 275 Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 13/120 (10%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F ++ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYTFEKYLNEKGQAYKVAYNYAKSFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KT+L AIAN I+R+ ++V + + + ++ + + ++L NI LL++DD+ Sbjct: 125 KTYLACAIANELIERE-QVKVKIMNLSQVINQIQKSVFKLDSNEIINNLSNIPLLILDDL 183 >gi|195867575|ref|ZP_03079578.1| replicative DNA helicase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|297588651|ref|ZP_06947294.1| replicative DNA helicase [Finegoldia magna ATCC 53516] gi|195660819|gb|EDX54073.1| replicative DNA helicase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|297574024|gb|EFH92745.1| replicative DNA helicase [Finegoldia magna ATCC 53516] Length = 275 Score = 44.7 bits (104), Expect = 0.036, Method: Compositional matrix adjust. Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 13/120 (10%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F F+ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYTFEKFLNEKGQAYKVAYNYAKSFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KT+L AIAN I+R +RV L + + + + + +L NI LL++DD+ Sbjct: 125 KTYLACAIANELIER-TQVRVKILNLSQVINQIQKSAFKLDSNEIISNLSNIPLLILDDL 183 >gi|302380811|ref|ZP_07269275.1| chromosomal replication initiator protein DnaA [Finegoldia magna ACS-171-V-Col3] gi|302311411|gb|EFK93428.1| chromosomal replication initiator protein DnaA [Finegoldia magna ACS-171-V-Col3] Length = 275 Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 13/120 (10%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SP ++ F F+ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPNQHQYTFERFLNEKGQAYKVAYNYAKSFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KT+L +IAN I+R+ +RV + M + + + + D+L NI LL++DD+ Sbjct: 125 KTYLACSIANELIERK-QVRVKIMNLSQVMNQIQKSAFKLDSNEIIDNLSNIPLLILDDL 183 >gi|237732473|ref|ZP_04562954.1| DNA replication initiation factor [Citrobacter sp. 30_2] gi|283832129|ref|ZP_06351870.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220] gi|226908012|gb|EEH93930.1| DNA replication initiation factor [Citrobacter sp. 30_2] gi|291071759|gb|EFE09868.1| DnaA regulatory inactivator Hda [Citrobacter youngae ATCC 29220] Length = 241 Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY +++ + G G++HLL A A A + Sbjct: 26 TFASFWPGD-NSSLLAALQNVLRQEHSGY-------IYLWSREGAGRSHLLHA-ACAELS 76 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 + + V Y+ + W + D + ++ L+ ID+++ + G L + Sbjct: 77 ARGD-AVGYVPLDKRTWFVPEVL---------DGMEHLSLVCIDNIECVAGDSLWEMAIF 126 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S K +++ DRPP +L P + SRL G Sbjct: 127 DLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 165 >gi|296533905|ref|ZP_06896431.1| ATPase [Roseomonas cervicalis ATCC 49957] gi|296265759|gb|EFH11858.1| ATPase [Roseomonas cervicalis ATCC 49957] Length = 121 Score = 44.3 bits (103), Expect = 0.043, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 50/96 (52%), Gaps = 5/96 (5%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + RL+ +VG Y SW +++ ++ + +PT FL+ W+++ Y + + L+ E+ Sbjct: 23 IRGRLREEVGEVEYRSWLRQMTLSAIEGEEAVILLPTRFLRDWVRSHYGDRLRNLWMAEN 82 Query: 102 SRIQGVEILV-----RSVALPSVEKTASSPSITKLS 132 ++ VEI V A P++ + ++PS LS Sbjct: 83 LGVRRVEIRVAPEGRAPEAEPALAEGLAAPSPAGLS 118 >gi|46203522|ref|ZP_00209000.1| COG0593: ATPase involved in DNA replication initiation [Magnetospirillum magnetotacticum MS-1] Length = 149 Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%) Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR-SFPEIGRRFGDRDHTTV 472 I R VA+ Y ++ D++ RR +V R A+ ++ P S ++GR FG RDHT++ Sbjct: 70 IIRRVAEKYGVTYADIIGTRRFDHLVSARHEAIRAVRLAHPTYSTLKLGRIFGGRDHTSI 129 Query: 473 LHAVR 477 LHA+R Sbjct: 130 LHALR 134 >gi|197303949|ref|ZP_03168981.1| hypothetical protein RUMLAC_02686 [Ruminococcus lactaris ATCC 29176] gi|197296917|gb|EDY31485.1| hypothetical protein RUMLAC_02686 [Ruminococcus lactaris ATCC 29176] Length = 328 Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 10/104 (9%) Query: 170 GSSNRVALTAAQSIAE--VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 G S R A+ I VDS G + LF++ VG+GKT+L IA I R+ Sbjct: 158 GRSAREAMENTLEICRHFVDSFG---TEFHNLFLYGDVGVGKTYLSTCIAKEIINRE--F 212 Query: 228 RVVYLTAEYFMWRFASAI---RDNCALNLKDSLRNIDLLLIDDM 268 V+Y +A A +D A N+ + + DLL+IDD+ Sbjct: 213 SVIYFSAPQLFNTLAQNTFDKKDVDARNMSEYIFECDLLIIDDL 256 >gi|221632702|ref|YP_002521923.1| putative chromosome replication initiation protein [Thermomicrobium roseum DSM 5159] gi|221155787|gb|ACM04914.1| putative chromosome replication initiation protein [Thermomicrobium roseum DSM 5159] Length = 215 Score = 44.3 bits (103), Expect = 0.047, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 18/127 (14%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQ---PNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 L + G GKTHL AIAN + Q P VV +Y FA R + N + Sbjct: 73 LLLMGGFGCGKTHLAAAIANYVLHHQRLFPLFTVVPDLLDYLRATFAPD-RTDSYDNRFE 131 Query: 256 SLRNIDLLLIDDMQ------FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 +RN LL++DD+ + KL Q ++N + K V +R +L+ LD Sbjct: 132 QVRNAGLLVLDDLGTEHTTPWATEKLFQ-----IINYRYNQRKPTVITTNR---DLDDLD 183 Query: 310 PRIRSRL 316 RIRSRL Sbjct: 184 ERIRSRL 190 >gi|297545601|ref|YP_003677903.1| IstB domain-containing protein ATP-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843376|gb|ADH61892.1| IstB domain protein ATP-binding protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 327 Score = 44.3 bits (103), Expect = 0.050, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALN-LKD 255 LF + GLGKT L IA + R + V+Y TA + R D + N + Sbjct: 185 LFFYGDSGLGKTFLANCIAKELLDRGKS--VIYRTAPDLIEGLRINKLNADGNSYNDYLE 242 Query: 256 SLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP-RI 312 L+ DLL+IDD+ + + +Q EF ++LN+ L K+ + + + P SE+ ++ P RI Sbjct: 243 LLKECDLLIIDDLGTESITAFSLQ-EFFNILNARLLLGKKFIISTNLPLSEIMAIYPERI 301 Query: 313 RSRLQG 318 SR+ G Sbjct: 302 YSRIFG 307 >gi|71066177|ref|YP_264904.1| regulatory inactivation of DnaA Hda protein [Psychrobacter arcticus 273-4] gi|71039162|gb|AAZ19470.1| regulatory inactivation of DnaA Hda protein [Psychrobacter arcticus 273-4] Length = 270 Score = 44.3 bits (103), Expect = 0.051, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 15/148 (10%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 + L++ S GK+HLL AI + I+ + + L+ + + +N+ Sbjct: 41 IGQLYLFGSPATGKSHLLSAICESFIEMDKS--AICLSLNELI---------HTDVNVLS 89 Query: 256 SLRNIDLLLIDDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 SL N L+ IDD++ + Q Q HL+N + +Q++ AA++P SEL + + Sbjct: 90 SLENFSLIAIDDLEVIEQNSQWQEALFHLINRSREGQRQLLFAANKPASELPFQLRDLLT 149 Query: 315 RLQGGVS--VPLGLHDYEMRFSILKNRL 340 RL S VP G HD R ++L++ L Sbjct: 150 RLAQAPSFKVPTG-HDLADREALLQSIL 176 >gi|289579457|ref|YP_003478084.1| IstB domain protein ATP-binding protein [Thermoanaerobacter italicus Ab9] gi|289529170|gb|ADD03522.1| IstB domain protein ATP-binding protein [Thermoanaerobacter italicus Ab9] Length = 327 Score = 44.3 bits (103), Expect = 0.052, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 9/126 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALN-LKD 255 LF + GLGKT L IA + R + V+Y TA + R D + N + Sbjct: 185 LFFYGDSGLGKTFLANCIAKELLDRGKS--VIYRTAPDLIEGLRINKLNADGNSYNDYLE 242 Query: 256 SLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP-RI 312 L+ DLL+IDD+ + + +Q EF ++LN+ L K+ + + + P SE+ ++ P RI Sbjct: 243 LLKECDLLIIDDLGTESITAFSLQ-EFFNILNARLLLGKKFIISTNLPLSEIMAIYPERI 301 Query: 313 RSRLQG 318 SR+ G Sbjct: 302 YSRIFG 307 >gi|303233470|ref|ZP_07320134.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|302495421|gb|EFL55163.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 275 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F ++ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYTFEKYLNEKGQAYKVAYNYAKSFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 KT+L +IAN I+R Q ++++ L+ + ++ D + + D+L NI LL++DD Sbjct: 125 KTYLACSIANELIEREQVKVKIMNLSQVINQIQKSAFKLD--SNEIIDNLSNIPLLILDD 182 Query: 268 M 268 + Sbjct: 183 L 183 >gi|289207741|ref|YP_003459807.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix] gi|288943372|gb|ADC71071.1| DnaA regulatory inactivator Hda [Thioalkalivibrio sp. K90mix] Length = 243 Score = 43.9 bits (102), Expect = 0.055, Method: Compositional matrix adjust. Identities = 60/215 (27%), Positives = 92/215 (42%), Gaps = 22/215 (10%) Query: 157 PLDSRFV----FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 PLD R FS F N +A A Q++ S G T ++ + +H G GKTHL Sbjct: 14 PLDLRLRDASRFSGFY-ARGNALARDAVQAL----SVG-TGIQEPQILLHGPSGSGKTHL 67 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 LQA +R V YL + + + + D L L+ +DD++ + Sbjct: 68 LQAACYQGHERGDP--VSYLP--------LGEVAEAPPMAVLDGLERSCLVALDDLEAVV 117 Query: 273 GKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 G+ E L+N L D+ +V+ AA PP L P + SRL G + D Sbjct: 118 GRGDWDEALFGLVNRLRDAGCRVLLAAAAPPEGLPVRLPDLASRLAWGPVFRMQRPDDVA 177 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 IL R A+ E P+ + + +L +R ++T Sbjct: 178 CKEILAQRAALRGLELPE-PVADYLLRRCSRDLST 211 >gi|295399486|ref|ZP_06809468.1| Primosomal DnaI domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312109956|ref|YP_003988272.1| Primosomal DnaI domain protein [Geobacillus sp. Y4.1MC1] gi|294978952|gb|EFG54548.1| Primosomal DnaI domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311215057|gb|ADP73661.1| Primosomal DnaI domain protein [Geobacillus sp. Y4.1MC1] Length = 312 Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ S G+GKT++L AIANA K+ +VY+ F S+++D Sbjct: 161 KMKGLYLYGSFGVGKTYILGAIANALAKKNVPSLIVYVPE--FFRELKSSLQDQTINEKL 218 Query: 255 DSLRNIDLLLIDDM 268 D ++ + +L++DD+ Sbjct: 219 DYVKKVPILMLDDI 232 >gi|326802730|ref|YP_004320548.1| hypothetical protein HMPREF9243_0138 [Aerococcus urinae ACS-120-V-Col10a] gi|326651037|gb|AEA01220.1| conserved hypothetical protein [Aerococcus urinae ACS-120-V-Col10a] Length = 275 Score = 43.9 bits (102), Expect = 0.060, Method: Compositional matrix adjust. Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 17/122 (13%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL +++F ++ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYIFEKYLNEKGQAYKVAYNYAKSFEQMKKDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYF-MWRFASAIRDNCALNLKDSLRNIDLLLID 266 KT+L +IAN I+R Q ++++ L+ + + A + N +N +L NI LL++D Sbjct: 125 KTYLACSIANELIERKQIKVKIMNLSQVINQIQKSAFKLDSNEIIN---NLSNIPLLILD 181 Query: 267 DM 268 D+ Sbjct: 182 DL 183 >gi|254977314|ref|ZP_05273786.1| DNA replication protein DnaC [Clostridium difficile QCD-66c26] gi|255094645|ref|ZP_05324123.1| DNA replication protein DnaC [Clostridium difficile CIP 107932] gi|255316398|ref|ZP_05357981.1| DNA replication protein DnaC [Clostridium difficile QCD-76w55] gi|255519057|ref|ZP_05386733.1| DNA replication protein DnaC [Clostridium difficile QCD-97b34] gi|255652241|ref|ZP_05399143.1| DNA replication protein DnaC [Clostridium difficile QCD-37x79] gi|260685195|ref|YP_003216480.1| DNA replication protein DnaC [Clostridium difficile CD196] gi|260688854|ref|YP_003219988.1| DNA replication protein DnaC [Clostridium difficile R20291] gi|306521958|ref|ZP_07408305.1| DNA replication protein DnaC [Clostridium difficile QCD-32g58] gi|260211358|emb|CBA66991.1| putative DNA replication protein [Clostridium difficile CD196] gi|260214871|emb|CBE07661.1| putative DNA replication protein [Clostridium difficile R20291] Length = 330 Score = 43.9 bits (102), Expect = 0.063, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR------QPNLRVVYLTAE 235 SI E H + L + S GLGKT++ IA + + Q + R++ + + Sbjct: 171 SICENFVHDFKKDNSENLLFYGSTGLGKTYMCNCIAKELLDKGNVVIYQTSFRILDILED 230 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQV 294 Y +F + + + +L + DLL+IDD+ L E +++N+ L + K++ Sbjct: 231 Y---KFRRDTNNQISEDNYKNLFDCDLLIIDDLGTELNNSFTSGEIFNIVNTRLVAGKKI 287 Query: 295 VAAADRPPSEL 305 + + + PS++ Sbjct: 288 IISTNLTPSQI 298 >gi|302668636|ref|YP_003833084.1| DnaA C-terminal domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302397600|gb|ADL36502.1| DnaA C-terminal domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 116 Score = 43.9 bits (102), Expect = 0.067, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 39/72 (54%) Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I R V ++ ++ D++S ++ + R + MYL + T S IG+ G RDHT V+ Sbjct: 26 IMRAVCEYCHVDEGDIVSKKKDEKLDSARTLIMYLCRKYTDMSLEGIGKMLGIRDHTKVM 85 Query: 474 HAVRKVEKMLET 485 + V++ +E+ Sbjct: 86 SGIFSVKREMES 97 >gi|126701281|ref|YP_001090178.1| DNA replication protein DnaC [Clostridium difficile 630] gi|255102871|ref|ZP_05331848.1| DNA replication protein DnaC [Clostridium difficile QCD-63q42] gi|255308691|ref|ZP_05352862.1| DNA replication protein DnaC [Clostridium difficile ATCC 43255] gi|115252718|emb|CAJ70562.1| DNA replication protein DnaC [Clostridium difficile] Length = 330 Score = 43.9 bits (102), Expect = 0.067, Method: Compositional matrix adjust. Identities = 31/131 (23%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR------QPNLRVVYLTAE 235 SI E H + L + S GLGKT++ IA + + Q + R++ + + Sbjct: 171 SICENFVHDFKKDNSENLLFYGSTGLGKTYMCNCIAKELLDKGNVVIYQTSFRILDILED 230 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQV 294 Y +F + + + +L + DLL+IDD+ L E +++N+ L + K++ Sbjct: 231 Y---KFRRDTNNQISEDNYKNLFDCDLLIIDDLGTELNNSFTSGEIFNIVNTRLVAGKKI 287 Query: 295 VAAADRPPSEL 305 + + + PS++ Sbjct: 288 IISTNLTPSQI 298 >gi|297587960|ref|ZP_06946604.1| probable DNA replication protein [Finegoldia magna ATCC 53516] gi|297574649|gb|EFH93369.1| probable DNA replication protein [Finegoldia magna ATCC 53516] Length = 325 Score = 43.9 bits (102), Expect = 0.069, Method: Compositional matrix adjust. Identities = 52/199 (26%), Positives = 86/199 (43%), Gaps = 27/199 (13%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 VF + DS +G S R + A + S YT L ++ VG GKT+L Sbjct: 143 VFDTKKDS-------AQGMSQRENMEAISENLKYYSKNYTK-NAKSLLLYGQVGTGKTYL 194 Query: 213 LQAIANASIKRQPNLRVVYLTA-----EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 L +A I + V+YL+A + F R+ + + ++D + N D+L+IDD Sbjct: 195 LSCMAKEII--ENGFSVIYLSAMQLLKQLFSIRYQN-FNEKPQPEVEDIIYNCDVLMIDD 251 Query: 268 MQFLQGKLIQHE-----FCHLLNSLLDSAKQVVAAADRPPSELES-LDPRIRSRLQGGVS 321 + G E LLN + + K + + + +L + D RI SR++G Sbjct: 252 L----GTENSTETNISLLFDLLNYRIQNQKTTIISTNIDLDDLTTQYDQRISSRIKGEF- 306 Query: 322 VPLGLHDYEMRFSILKNRL 340 +P+ ++R KN L Sbjct: 307 IPIQFFGRDIREERFKNGL 325 >gi|302379873|ref|ZP_07268356.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] gi|302312351|gb|EFK94349.1| conserved hypothetical protein [Finegoldia magna ACS-171-V-Col3] Length = 325 Score = 43.9 bits (102), Expect = 0.071, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 80/182 (43%), Gaps = 20/182 (10%) Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G S +V + + E S Y + L ++ VG GKT+LL +A I + V Sbjct: 153 GVSQKVYMQRMKDYLEKYSKEYPEDK-QSLLLYGKVGTGKTYLLSCMAKEII--ENGFSV 209 Query: 230 VYLTA-----EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE----- 279 +YL+A + F R+ + + ++D + N D+L+IDD+ G E Sbjct: 210 IYLSAMQLLKQLFSIRYQN-FNEKPQPEVEDIIYNCDVLMIDDL----GTENSTETNISL 264 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 LLN + + K + + + +L D RI SR++G S PL ++R KN Sbjct: 265 LFDLLNYRIQNQKTTIISTNIDLEDLPRQYDQRISSRIKGEFS-PLKFFGRDIREERFKN 323 Query: 339 RL 340 L Sbjct: 324 GL 325 >gi|300814620|ref|ZP_07094871.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511239|gb|EFK38488.1| conserved hypothetical protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 275 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F ++ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYTFEKYLNEKGQAFKVAYNYAKSFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 KT+L +IAN I+R Q ++++ L+ + ++ D + + D+L NI LL++DD Sbjct: 125 KTYLACSIANELIEREQVKVKIMNLSQVINQIQKSAFKLD--SNEIIDNLSNISLLILDD 182 Query: 268 M 268 + Sbjct: 183 L 183 >gi|255657610|ref|ZP_05403019.1| DNA replication protein DnaC [Clostridium difficile QCD-23m63] gi|296452710|ref|ZP_06894400.1| DNA replication protein [Clostridium difficile NAP08] gi|296880037|ref|ZP_06904007.1| DNA replication protein [Clostridium difficile NAP07] gi|296258400|gb|EFH05305.1| DNA replication protein [Clostridium difficile NAP08] gi|296429014|gb|EFH14891.1| DNA replication protein [Clostridium difficile NAP07] Length = 330 Score = 43.5 bits (101), Expect = 0.072, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 12/132 (9%) Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR------QPNLRVVYLTAE 235 SI E H + L + S GLGKT++ IA + + Q + R++ + + Sbjct: 171 SICENFVHDFKKDNSENLLFYGSTGLGKTYMCNCIAKELLDKGNVVIYQTSFRILDILED 230 Query: 236 YFMWRFA-SAIRDNCALNLKDSLRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQ 293 Y R + + I ++ NL D DLL+IDD+ L E +++N+ L + K+ Sbjct: 231 YKFRRDSNNQISEDNYKNLFDC----DLLIIDDLGTELNNSFTSGEIFNIVNTRLVAGKK 286 Query: 294 VVAAADRPPSEL 305 ++ + + PS++ Sbjct: 287 IIISTNLTPSQI 298 >gi|239827999|ref|YP_002950623.1| primosomal protein DnaI [Geobacillus sp. WCH70] gi|239808292|gb|ACS25357.1| Primosomal DnaI domain protein [Geobacillus sp. WCH70] Length = 312 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+++ S G+GKT++L AIANA ++ + +VY+ F S+++D Sbjct: 161 KMKGLYLYGSFGVGKTYILGAIANALAQKNVSSLIVYVPE--FFRELKSSLQDQTINEKL 218 Query: 255 DSLRNIDLLLIDDM 268 D ++ + +L++DD+ Sbjct: 219 DYVKKVPILMLDDI 232 >gi|303235370|ref|ZP_07321987.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|302493491|gb|EFL53280.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 325 Score = 43.5 bits (101), Expect = 0.074, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 27/191 (14%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 VF + DS +G S R + A + S YT L ++ VG GKT+L Sbjct: 143 VFDTKKDSS-------QGMSQRENMQAISENLKYYSKNYTK-NAKSLLLYGQVGTGKTYL 194 Query: 213 LQAIANASIKRQPNLRVVYLTA-----EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 L +A I + V+YL+A + F R+ + + ++D + N D+L+IDD Sbjct: 195 LSCMAKEII--ENGFSVIYLSAMQLLKQLFSIRYQN-FNEEPQPEVEDIIYNCDVLMIDD 251 Query: 268 MQFLQGKLIQHE-----FCHLLNSLLDSAKQVVAAADRPPSELES-LDPRIRSRLQGGVS 321 + G E LLN + + K + + + +L+S D RI SR++G Sbjct: 252 L----GTENSTETNISLLFDLLNYRIQNQKTTIISTNIDLDDLQSQYDQRISSRIKGEF- 306 Query: 322 VPLGLHDYEMR 332 +P+ ++R Sbjct: 307 IPIQFFGRDIR 317 >gi|307332670|ref|ZP_07611702.1| IstB domain protein ATP-binding protein [Streptomyces violaceusniger Tu 4113] gi|306881684|gb|EFN12838.1| IstB domain protein ATP-binding protein [Streptomyces violaceusniger Tu 4113] Length = 279 Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GK+HL +A+AN +I ++V + T E A DN + DL+++ Sbjct: 134 GTGKSHLAEALANKAIDE--GMKVSWFTLESLTAHLGRATVDNTVSKAVAKITRSDLIIV 191 Query: 266 DDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 DD+ L G+ F ++++ + + V+ ++ PS +S+ P+ Sbjct: 192 DDIGMLPSGQAAAEAFYRVIDAAYER-RSVIVTSNLHPSGFDSIMPK 237 >gi|325261329|ref|ZP_08128067.1| putative DNA replication protein DnaC [Clostridium sp. D5] gi|324032783|gb|EGB94060.1| putative DNA replication protein DnaC [Clostridium sp. D5] Length = 331 Score = 43.5 bits (101), Expect = 0.078, Method: Compositional matrix adjust. Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 10/183 (5%) Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTV--RLNPLFIHASVGLGKTHLLQAIANASIK 222 + +I+ + R ++ Q ++ H T N LF++ VG+GKT L IA + Sbjct: 139 NNYIDSKTGRSSMQVIQDALQLCHHFADTFGKEFNNLFLYGDVGVGKTFLSNCIAKELMD 198 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNC---ALNLKDSLRNIDLLLIDDMQF-LQGKLIQH 278 R+ + V+Y ++ F A D A N+ + + + DLL++DD+ + Sbjct: 199 REYS--VLYFSSSKFFSILAKNTFDKNNIDAQNMYEYIFDCDLLIVDDLGTEFTNSFVAS 256 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVSV-PLGLHDYEMRFSIL 336 +F +N L S K + + + L L R SR+ ++ L D ++ ++ Sbjct: 257 QFFTCINERLLSRKSTIISTNLSLDTLADLYTERSFSRITSNYTMLKLIGDDIRIKKKLI 316 Query: 337 KNR 339 KNR Sbjct: 317 KNR 319 >gi|256544721|ref|ZP_05472093.1| replicative DNA helicase [Anaerococcus vaginalis ATCC 51170] gi|256399610|gb|EEU13215.1| replicative DNA helicase [Anaerococcus vaginalis ATCC 51170] Length = 275 Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 63/122 (51%), Gaps = 17/122 (13%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F F+ +G + +VA A++ ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYTFEKFLNEKGQAYKVAYNYAKNFEQMKKDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYF-MWRFASAIRDNCALNLKDSLRNIDLLLID 266 KT+L AIAN I R Q ++++ L+ + + A + N +N +L NI LL++D Sbjct: 125 KTYLACAIANELIGRKQVKVKIMNLSQVINQIQKSAFKLDSNEIIN---NLSNIPLLILD 181 Query: 267 DM 268 D+ Sbjct: 182 DL 183 >gi|229087134|ref|ZP_04219284.1| hypothetical protein bcere0022_37070 [Bacillus cereus Rock3-44] gi|228696202|gb|EEL49037.1| hypothetical protein bcere0022_37070 [Bacillus cereus Rock3-44] Length = 312 Score = 43.5 bits (101), Expect = 0.079, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+ + G+GKT+LL AIAN ++ + +VYL F+ S++++N Sbjct: 161 KIQGLYFYGKFGVGKTYLLGAIANELALKKISSMIVYLPE--FLREIKSSLQNNTIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|28893814|gb|AAM52332.1| replication initiator RepA [Bacillus subtilis] gi|145286426|gb|ABP52082.1| replication initiation factor RepA [Bacillus subtilis] Length = 344 Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 3/96 (3%) Query: 16 EIAEKTPN--VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVH 73 EI ++ PN + + E + + + S ++N+V + +WF+ K N + Sbjct: 246 EIKKQIPNPTTSFESISMTTEEEKVDSTLKSEMQNRVSKPSFDTWFKNTKIKIENKNCL- 304 Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 L VP+ F WIK RYLETI + +E + +E+ Sbjct: 305 LLVPSEFAFEWIKKRYLETIKTVLEEAGYVFEKIEL 340 >gi|281500623|pdb|2W58|A Chain A, Crystal Structure Of The Dnai gi|281500624|pdb|2W58|B Chain B, Crystal Structure Of The Dnai Length = 202 Score = 43.5 bits (101), Expect = 0.082, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L++H S G+GKT+LL AIAN KR + +VY+ E F +++D Sbjct: 53 KMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYV-PELFR-ELKHSLQDQTMNEKL 110 Query: 255 DSLRNIDLLLIDDM 268 D ++ + +L++DD+ Sbjct: 111 DYIKKVPVLMLDDL 124 >gi|313678802|ref|YP_004056542.1| primosomal protein dnaI-like protein [Mycoplasma bovis PG45] gi|312950153|gb|ADR24748.1| primosomal protein dnaI-like protein [Mycoplasma bovis PG45] Length = 299 Score = 43.5 bits (101), Expect = 0.085, Method: Compositional matrix adjust. Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 4/88 (4%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKD 255 N ++I+ S G GKT++ A+ N+ R + Y+ + + ++ +LN +K Sbjct: 151 NSIYIYGSNGTGKTYIANAMVNSFASR--GISSAYIKLNDLFTYLKNKMSNSISLNEIKS 208 Query: 256 SLRNIDLLLIDDMQFLQ-GKLIQHEFCH 282 SL+N+ LL+IDD+ F + + +++F + Sbjct: 209 SLKNVSLLVIDDLGFEKHNEWFKYDFVY 236 >gi|228999358|ref|ZP_04158937.1| hypothetical protein bmyco0003_39130 [Bacillus mycoides Rock3-17] gi|229006913|ref|ZP_04164543.1| hypothetical protein bmyco0002_38140 [Bacillus mycoides Rock1-4] gi|228754313|gb|EEM03728.1| hypothetical protein bmyco0002_38140 [Bacillus mycoides Rock1-4] gi|228760303|gb|EEM09270.1| hypothetical protein bmyco0003_39130 [Bacillus mycoides Rock3-17] Length = 312 Score = 43.5 bits (101), Expect = 0.089, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+ + G+GKT+LL AIAN ++ + +VYL F+ S++++N Sbjct: 161 KVQALYFYGKFGVGKTYLLGAIANELALKKISSMIVYLPE--FLREIKSSLQNNTIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|303234379|ref|ZP_07321018.1| conserved hypothetical protein [Finegoldia magna BVS033A4] gi|302494495|gb|EFL54262.1| conserved hypothetical protein [Finegoldia magna BVS033A4] Length = 275 Score = 43.5 bits (101), Expect = 0.090, Method: Compositional matrix adjust. Identities = 35/121 (28%), Positives = 64/121 (52%), Gaps = 15/121 (12%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F ++ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYTFEKYLNEKGQAFKVAYNYAKSFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 KT+L +IAN I+R Q ++++ L+ + ++ D + + D+L NI LL++DD Sbjct: 125 KTYLACSIANELIERKQVKVKIMNLSQVINQIQKSAFKLD--SNEIIDNLSNIPLLILDD 182 Query: 268 M 268 + Sbjct: 183 L 183 >gi|289677080|ref|ZP_06497970.1| DNA replication initiation factor [Pseudomonas syringae pv. syringae FF5] Length = 140 Score = 43.1 bits (100), Expect = 0.095, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 21/149 (14%) Query: 157 PLDSRF----VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 PL R F + G+ N AL + + E D+ G+T + +++ G+G+THL Sbjct: 7 PLSVRLRDDATFVNYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRTHL 61 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 LQA LR L A I + + L D L +L+ +DD+Q + Sbjct: 62 LQAAC---------LRFEQLGEPAVYLPLAEVIDE--GIELFDHLEQYELVCLDDLQAIV 110 Query: 273 GKLIQHE-FCHLLNSLLDSAKQVVAAADR 300 GK E HL N L DS ++++ AA + Sbjct: 111 GKPDWEEALFHLFNRLRDSGRRLLIAASQ 139 >gi|228993305|ref|ZP_04153221.1| hypothetical protein bpmyx0001_40370 [Bacillus pseudomycoides DSM 12442] gi|228766373|gb|EEM15016.1| hypothetical protein bpmyx0001_40370 [Bacillus pseudomycoides DSM 12442] Length = 312 Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+ + G+GKT+LL AIAN ++ + +VYL F+ S++++N Sbjct: 161 KVQALYFYGKFGVGKTYLLGAIANELALKKISSMIVYLPE--FLREIKSSLQNNTIGEKI 218 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 219 DAVKRVQVLMLDDI 232 >gi|295695374|ref|YP_003588612.1| Chromosomal replication initiator DnaA [Bacillus tusciae DSM 2912] gi|295410976|gb|ADG05468.1| Chromosomal replication initiator DnaA [Bacillus tusciae DSM 2912] Length = 324 Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust. Identities = 39/151 (25%), Positives = 66/151 (43%), Gaps = 9/151 (5%) Query: 159 DSRFVFSTFIEGSSNRVA--LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 D RF F F E R AA AE G V + L+I G+GKTHLL AI Sbjct: 120 DGRFTFENFPEEQKRRFPDLYKAAVEFAETVEPG---VPMKGLYIFGPPGVGKTHLLLAI 176 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSLRNIDLLLIDDM-QFLQGK 274 N +R+ + +++ A+ R S I + + ++ + +L ID+ Q Sbjct: 177 VNRLEERR--VPTLFVRADMIFDRLRSRIASGQDVEPIVEAYCRVPVLAIDEFAQERPSD 234 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + ++N+ +A+ + ++ PP E+ Sbjct: 235 FTLEKMFRIINARFTTARPTLFTSNYPPPEI 265 >gi|328544570|ref|YP_004304679.1| ATPase involved in DNA replication initiation [polymorphum gilvum SL003B-26A1] gi|326414312|gb|ADZ71375.1| ATPase involved in DNA replication initiation [Polymorphum gilvum SL003B-26A1] Length = 103 Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 38/65 (58%), Gaps = 2/65 (3%) Query: 417 MVAKHYNISRNDLLSNRRVRT-VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 ++A+ IS +++ + R R RQ+ MYL+ +M S E+GRR+ RD +TV HA Sbjct: 5 LIAEGLGISPDEIHHSTRGRARSAEARQMVMYLAHVMLGLSLCEVGRRY-RRDRSTVAHA 63 Query: 476 VRKVE 480 RK E Sbjct: 64 CRKWE 68 >gi|313652041|ref|YP_004046719.1| Chromosomal replication initiator DnaA [Calditerrivibrio nitroreducens DSM 19672] gi|312940792|gb|ADR19983.1| Chromosomal replication initiator DnaA [Calditerrivibrio nitroreducens DSM 19672] Length = 485 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 16/122 (13%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 ++++ F ++ S+N A +S+AE + G P G+GKTHL+ Sbjct: 117 ADSFNTKYSFDNYLVDSTNHSAYMTMKSVAEGNYGGKIITLYGP------TGVGKTHLVS 170 Query: 215 AIANASIKRQPNLRVVYLTAEYF--MWRFASAIRDNCALNLKDSLRNI---DLLLIDDMQ 269 A+ NA ++ Y Y+ + + S++R L+ LR I D++ IDD+ Sbjct: 171 AMLNAFSEKYEGKSAYYFVKSYWVELIKKYSSMR-----QLEIFLREINKADIIAIDDLS 225 Query: 270 FL 271 F+ Sbjct: 226 FI 227 >gi|269837626|ref|YP_003319854.1| IstB domain-containing protein ATP-binding protein [Sphaerobacter thermophilus DSM 20745] gi|269786889|gb|ACZ39032.1| IstB domain protein ATP-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 241 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 25/148 (16%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALNLK-D 255 LF+ G GKTHL A+A+ I Q +R ++L + R A + + + Sbjct: 94 LFLLGGYGCGKTHLAAAVAHYVIAHQ-RMRALFLVVPDLLDHLRATFAPDQGATYDARFN 152 Query: 256 SLRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 ++R IDLL++DD+ + + KL Q ++N + + + ++R + LD Sbjct: 153 AIRTIDLLVLDDLGTEHTTPWAREKLFQ-----IINFRYNERRPTIITSNR---NFDELD 204 Query: 310 PRIRSRLQG-----GVSVPLGLHDYEMR 332 PR+ SRL V +P G DY +R Sbjct: 205 PRVASRLSDPRICHAVLIPAG--DYRVR 230 >gi|257464853|ref|ZP_05629224.1| DNA replication initiation factor [Actinobacillus minor 202] gi|257450513|gb|EEV24556.1| DNA replication initiation factor [Actinobacillus minor 202] Length = 236 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 20/148 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I GK+HLL+A++N ++ Q + + L+ ++ F+ + DN A Sbjct: 42 FYIWGGKSCGKSHLLKAVSNYYLQNQRSSSYIPLSKSHY---FSPMVLDNAA-------- 90 Query: 259 NIDLLLIDDMQFLQG-KLIQHEFCHLLN------SLLDSAKQ--VVAAADRPPSELESLD 309 +D++ +DD+Q + G + + L N SL + + ++ +AD PP EL+ Sbjct: 91 QLDVICLDDIQAIAGNEEWEVAIFDLFNQIREQQSLFGNGHKTLLLISADCPPHELKIKL 150 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILK 337 P +RSRL G L + E + ILK Sbjct: 151 PDLRSRLIWGEVYHLNHLNDEQKQKILK 178 >gi|56421256|ref|YP_148574.1| primosomal protein DnaI [Geobacillus kaustophilus HTA426] gi|56381098|dbj|BAD77006.1| primosome component (helicase loader) [Geobacillus kaustophilus HTA426] Length = 313 Score = 43.1 bits (100), Expect = 0.10, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L++H S G+GKT+LL AIAN KR + +VY+ +++D Sbjct: 160 KMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE--LFRELKHSLQDQTMNEKL 217 Query: 255 DSLRNIDLLLIDDM 268 D ++ + +L++DD+ Sbjct: 218 DYIKKVPVLMLDDL 231 >gi|240949838|ref|ZP_04754164.1| DNA replication initiation factor [Actinobacillus minor NM305] gi|240295692|gb|EER46394.1| DNA replication initiation factor [Actinobacillus minor NM305] Length = 236 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 40/148 (27%), Positives = 71/148 (47%), Gaps = 20/148 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I GK+HLL+A++N ++ Q + + L+ ++ F+ + DN A Sbjct: 42 FYIWGGKSCGKSHLLKAVSNYYLQNQRSSSYIPLSKSHY---FSPMVLDNAA-------- 90 Query: 259 NIDLLLIDDMQFLQG-KLIQHEFCHLLN------SLLDSAKQ--VVAAADRPPSELESLD 309 +D++ +DD+Q + G + + L N SL + + ++ +AD PP EL+ Sbjct: 91 QLDVICLDDIQAIAGNEEWEVAIFDLFNQIREQQSLFGNGHKTLLLISADCPPHELKIKL 150 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILK 337 P +RSRL G L + E + ILK Sbjct: 151 PDLRSRLIWGEVYHLNHLNDEQKQKILK 178 >gi|291165618|gb|EFE27667.1| DNA replication protein DnaC [Filifactor alocis ATCC 35896] Length = 330 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 65/123 (52%), Gaps = 12/123 (9%) Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-------EYFMWRFASAIRDNCALNLKD 255 VGLGK++L +A ++ Q V+Y + E +++R IR + ++ Sbjct: 190 GQVGLGKSYLSSCVAKEAM--QSEKTVIYFSVRELIDCLECYVFRREEYIRRYRPIT-RE 246 Query: 256 SLRNIDLLLIDDM-QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIR 313 + + DLL+IDD+ + + +Q E H++NS ++ KQ++ + ++ P EL + RI Sbjct: 247 MIFDSDLLIIDDLGSEIPNQFVQSELFHIINSRMERGKQMIISTNKNPLELRDIYGERIY 306 Query: 314 SRL 316 SR+ Sbjct: 307 SRM 309 >gi|254479673|ref|ZP_05092971.1| IstB-like ATP binding protein [Carboxydibrachium pacificum DSM 12653] gi|214034385|gb|EEB75161.1| IstB-like ATP binding protein [Carboxydibrachium pacificum DSM 12653] Length = 327 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 9/126 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALN-LKD 255 LF + + GLGKT L IA + R + V+Y TA + R D+ N + Sbjct: 185 LFFYGNSGLGKTFLANCIAKELLDRGKS--VIYRTAPDLIEGLRINKLNPDSEVYNEYLE 242 Query: 256 SLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP-RI 312 L+ DLL+IDD+ + + +Q EF ++LN+ L K+ + + + P SE+ ++ P RI Sbjct: 243 LLKECDLLIIDDLGTEPITAFSLQ-EFFNILNTRLLLGKKFIISTNLPLSEIMAIYPERI 301 Query: 313 RSRLQG 318 SR+ G Sbjct: 302 YSRIFG 307 >gi|261418264|ref|YP_003251946.1| primosomal protein DnaI [Geobacillus sp. Y412MC61] gi|297529118|ref|YP_003670393.1| Primosomal DnaI domain protein [Geobacillus sp. C56-T3] gi|319767776|ref|YP_004133277.1| Primosomal DnaI domain protein [Geobacillus sp. Y412MC52] gi|261374721|gb|ACX77464.1| Primosomal DnaI domain protein [Geobacillus sp. Y412MC61] gi|297252370|gb|ADI25816.1| Primosomal DnaI domain protein [Geobacillus sp. C56-T3] gi|317112642|gb|ADU95134.1| Primosomal DnaI domain protein [Geobacillus sp. Y412MC52] Length = 313 Score = 43.1 bits (100), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L++H S G+GKT+LL AIAN KR + +VY+ +++D Sbjct: 160 KMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE--LFREMKHSLQDQTMNEKL 217 Query: 255 DSLRNIDLLLIDDM 268 D ++ + +L++DD+ Sbjct: 218 DYIKKVPVLMLDDL 231 >gi|315038858|ref|YP_004032426.1| primosomal protein DnaI [Lactobacillus amylovorus GRL 1112] gi|312276991|gb|ADQ59631.1| primosomal protein DnaI [Lactobacillus amylovorus GRL 1112] gi|327184029|gb|AEA32476.1| primosomal protein DnaI [Lactobacillus amylovorus GRL 1118] Length = 305 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + N V++L F+ AS DN ++L++ +R Sbjct: 153 LYLSGDFGVGKTYILAGLANYVVTNM-NKNVIFLHVPTFIAGLASHFDDNSRISLQEEIR 211 Query: 259 NI---DLLLIDDM 268 + DLL++DD+ Sbjct: 212 RLSECDLLILDDI 224 >gi|325957299|ref|YP_004292711.1| primosomal protein DnaI [Lactobacillus acidophilus 30SC] gi|325333864|gb|ADZ07772.1| primosomal protein DnaI [Lactobacillus acidophilus 30SC] Length = 305 Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + N V++L F+ AS DN ++L++ +R Sbjct: 153 LYLSGDFGVGKTYILAGLANYVVTNM-NKNVIFLHVPTFIAGLASHFDDNSRISLQEEIR 211 Query: 259 NI---DLLLIDDM 268 + DLL++DD+ Sbjct: 212 RLSECDLLILDDI 224 >gi|257469553|ref|ZP_05633645.1| hypothetical protein FulcA4_09453 [Fusobacterium ulcerans ATCC 49185] gi|317063793|ref|ZP_07928278.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] gi|313689469|gb|EFS26304.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185] Length = 269 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 39/201 (19%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S +D +F+ STF + + + A+ E TT+ LF+H VG GKT Sbjct: 72 SIMDLKFLNSTFEKADMSIPVMKMAKKYTEKFIEKGTTL---GLFLHGRVGTGKTFASAC 128 Query: 216 IANASIKRQPNLRVV----YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 IAN + R + V+ YL W A A RD + D ++N DLL+IDD+ Sbjct: 129 IANELMARGKTVLVMNFGLYLNKIRRDW--AEAERD-----VLDYVQNCDLLIIDDI--- 178 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL-DPRIRSRLQGGVSVPLGLHDYE 330 V A D +L +L D R R+ V+ L L + Sbjct: 179 ---------------------GVEAVTDWMQDKLFTLIDTRYRAEKPMIVTTNLELDNSS 217 Query: 331 MRFSILKNRLAISQKEDPKLN 351 + S ++N+L++ + +P+++ Sbjct: 218 LTESQIENKLSVESRFNPRIS 238 >gi|237737477|ref|ZP_04567958.1| replicative DNA helicase [Fusobacterium mortiferum ATCC 9817] gi|229421339|gb|EEO36386.1| replicative DNA helicase [Fusobacterium mortiferum ATCC 9817] Length = 261 Score = 42.7 bits (99), Expect = 0.14, Method: Compositional matrix adjust. Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 17/170 (10%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S +D +F+ S F + A+ AE + Y T + ++ VG GKT+ Sbjct: 76 SVIDKKFLDSRFDNADMADKHMAMAKKYAE-NFIKYGTAE-GGILLYGGVGTGKTYATAC 133 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM------Q 269 I N + + V+ L Y R A +N LN ++ DLL+IDD+ + Sbjct: 134 ICNELMSNGKTVLVMNLGLYYLKLRREWAEAENDVLNY---VKTCDLLVIDDLGTENVSE 190 Query: 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPRIRSRLQG 318 F + K+ +L+++ + K ++ + P E+ E L RI R+ G Sbjct: 191 FTKEKMF-----NLIDTRYRANKPMLITTNLTPDEIREKLGSRIADRIAG 235 >gi|20809037|ref|NP_624208.1| DNA replication protein DnaC [Thermoanaerobacter tengcongensis MB4] gi|20517709|gb|AAM25812.1| DNA replication protein [Thermoanaerobacter tengcongensis MB4] Length = 327 Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 9/126 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCALN-LKD 255 LF + + GLGKT L IA + R + V+Y TA + R D+ N + Sbjct: 185 LFFYGNSGLGKTFLANCIAKELLDRGKS--VIYRTAPDLIEGLRINKLNPDSEIYNEYLE 242 Query: 256 SLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP-RI 312 L+ DLL+IDD+ + + +Q EF ++LN+ L K+ + + + P SE+ ++ P RI Sbjct: 243 LLKECDLLIIDDLGTEPITAFSLQ-EFFNILNTRLLLGKKFIISTNLPLSEIMAIYPERI 301 Query: 313 RSRLQG 318 SR+ G Sbjct: 302 YSRIFG 307 >gi|320160096|ref|YP_004173320.1| hypothetical protein ANT_06860 [Anaerolinea thermophila UNI-1] gi|319993949|dbj|BAJ62720.1| hypothetical protein ANT_06860 [Anaerolinea thermophila UNI-1] Length = 473 Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 24/130 (18%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-W-RFASAIRDNCALNLKDS 256 L + G+GKTHL AIA+ ++ + ++LT + W R+A D+ + Sbjct: 132 LLLIGGYGVGKTHLAAAIAHEAVSL--GVPTLFLTVPDLLDWLRYAYDAPDDTFEARFEE 189 Query: 257 LRNIDLLLIDDM------QFLQGKLIQ---HEFCHLLNSLLDSAKQVVAAADRPPSELES 307 +RNI LL++DD+ + Q KL Q H + H L++++ + + LE Sbjct: 190 IRNIRLLVLDDLGTQNATAWAQEKLYQIFNHRYIHRLSTVITTNQA-----------LEE 238 Query: 308 LDPRIRSRLQ 317 ++ RI+SRL+ Sbjct: 239 IEGRIQSRLR 248 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 76/183 (41%), Gaps = 44/183 (24%) Query: 157 PLDSRFVFSTF-----------IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 PL SR F TF E ++ R A A AE + G+ L + Sbjct: 279 PLYSRMTFGTFHFREKEKNITSEERANLRRAFEIAYEFAE-NPRGW-------LVLSGDY 330 Query: 206 GLGKTHLLQAIAN--ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSLRNIDL 262 G GKTHL AI N AS+ P VV ++ F+ N + + + + +R+ L Sbjct: 331 GCGKTHLAAAIGNYQASLGNPPLFVVVPDLLDHLRSTFSPT--SNVSYDEVFEEVRSAKL 388 Query: 263 LLIDDMQFLQG---------KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 L++DD+ ++I H + L + V+ + +P E +DPRIR Sbjct: 389 LILDDLGTQSATPWAREKLYQIINHRYIAELPT-------VITTSSKP----EEIDPRIR 437 Query: 314 SRL 316 SR+ Sbjct: 438 SRM 440 >gi|331268229|ref|YP_004394721.1| DNA replication protein DnaC [Clostridium botulinum BKT015925] gi|329124779|gb|AEB74724.1| DNA replication protein DnaC, putative [Clostridium botulinum BKT015925] Length = 319 Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust. Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 7/127 (5%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIRDNCALNLKDSL 257 L + + G GKT L IA + R V+Y TAE + + +++N L+D L Sbjct: 175 LLFYGNSGTGKTFLTHCIAKELLDRGH--LVIYRTAEDLIKNLRETKLQNN--YELEDLL 230 Query: 258 RNIDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPRIRSR 315 N DLL+IDD+ Q + E +LLN + K++V + + L ++ RI SR Sbjct: 231 INCDLLIIDDLGTEQISNFTKTELFNLLNKRILKNKKMVISTNYALELLSQTYSERITSR 290 Query: 316 LQGGVSV 322 L G ++ Sbjct: 291 LFGNFTL 297 >gi|299822778|ref|ZP_07054664.1| primosomal protein DnaI [Listeria grayi DSM 20601] gi|299816307|gb|EFI83545.1| primosomal protein DnaI [Listeria grayi DSM 20601] Length = 310 Score = 42.7 bits (99), Expect = 0.15, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 5/103 (4%) Query: 167 FIEGSSNRVALTAAQSIAEVDSH-GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F + S +VAL A ++S+ RL L+IH + G GK++LL A+A + Sbjct: 133 FTDEESRQVALVEAYQF--LNSYPSANGERLKGLYIHGNFGTGKSYLLGAMAKELAVKGI 190 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 + +VYL FM +I DN + D+L++DD+ Sbjct: 191 SSTLVYLPE--FMREIKQSISDNTVGEKIQFAKETDILMLDDI 231 >gi|116626639|ref|YP_828795.1| chromosomal replication initiator DnaA domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229801|gb|ABJ88510.1| Chromosomal replication initiator, DnaA C-terminal domain [Candidatus Solibacter usitatus Ellin6076] Length = 169 Score = 42.7 bits (99), Expect = 0.16, Method: Compositional matrix adjust. Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 4/57 (7%) Query: 430 LSNRRVRTVVRP----RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 L + RV P RQ+AMYL+K + S +IGR + RD +TV +AV+K+E + Sbjct: 28 LGHTRVSGSAHPAVFNRQIAMYLAKHVGGWSTTQIGRFYNGRDRSTVCYAVKKIEML 84 >gi|152976961|ref|YP_001376478.1| primosomal protein DnaI [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152025713|gb|ABS23483.1| Primosomal DnaI domain protein [Bacillus cytotoxicus NVH 391-98] Length = 311 Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L+ + G+GKT +L AIAN +R+ + +VYL F+ S++++N Sbjct: 160 KVQALYFYGPFGVGKTFILGAIANELAQRKISSMIVYLPE--FLREIKSSLQNNTISEKI 217 Query: 255 DSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 218 DAVKYVPVLMLDDI 231 >gi|138896282|ref|YP_001126735.1| primosomal protein DnaI [Geobacillus thermodenitrificans NG80-2] gi|196249904|ref|ZP_03148599.1| Primosomal DnaI domain protein [Geobacillus sp. G11MC16] gi|134267795|gb|ABO67990.1| Primosomal protein DnaI [Geobacillus thermodenitrificans NG80-2] gi|196210418|gb|EDY05182.1| Primosomal DnaI domain protein [Geobacillus sp. G11MC16] Length = 313 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 4/75 (5%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQ-PNLRVVYLTAEYFMWRFASAIRDNCALNL 253 ++ L++H S G+GKT+LL AIAN KR P+L +VY+ +++D Sbjct: 160 KMKGLYLHGSFGVGKTYLLGAIANELAKRNIPSL-IVYVPE--LFRELKHSLQDQTMNEK 216 Query: 254 KDSLRNIDLLLIDDM 268 D ++ + +L++DD+ Sbjct: 217 LDYVKKVPILMLDDL 231 >gi|260598871|ref|YP_003211442.1| DNA replication initiation factor [Cronobacter turicensis z3032] gi|260218048|emb|CBA32767.1| DnaA-homolog protein hda [Cronobacter turicensis z3032] Length = 233 Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ D GY ++ + G G++HLL A A A + Sbjct: 18 TFASFWPGD-NPSLLAALQTMLRHDRSGY-------IYFWSREGGGRSHLLHA-ACAELS 68 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + + + + L+ ID+++ + G +L + Sbjct: 69 QRGD-AVGYVPLDKRTWFVPEVL---------EGMEQLSLVCIDNIECIAGDELWEMAIF 118 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 +L N +L+S +++ DRPP +L P + SRL G Sbjct: 119 NLYNRILESGNTRLLITGDRPPRQLNLKLPDLASRLDWG 157 >gi|238898965|ref|YP_002924647.1| regulatory factor involved in inactivation of DnaA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466725|gb|ACQ68499.1| regulatory factor involved in inactivation of DnaA [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 246 Score = 42.4 bits (98), Expect = 0.18, Method: Compositional matrix adjust. Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 FS F G ++ AL AA A DSHG ++ + G G++HLL A + K+ Sbjct: 32 FSGFYPGDNS--ALLAAIESALCDSHGRY------IYFWSKQGSGRSHLLHAACSTLSKQ 83 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCH 282 + V L + + + + + + L+ ID+++ + G + + H Sbjct: 84 GKAVGYVPLDKRAYF-----------TVEVLEGMEQLALICIDNIEHIVGDIEWEMGIFH 132 Query: 283 LLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+ ++ DRPP +L P + SRL G Sbjct: 133 LYNRILEKDHTCLLMTGDRPPRQLHLHLPDLASRLDWG 170 >gi|300857350|ref|YP_003782334.1| putative DNA replication protein DnaC [Clostridium ljungdahlii DSM 13528] gi|300437465|gb|ADK17232.1| putative DNA replication protein DnaC [Clostridium ljungdahlii DSM 13528] Length = 328 Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 3/70 (4%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L + S G GKT L IA I R V+Y T+E + + IR N ++ L+D L Sbjct: 186 LLFYGSAGTGKTFLSNCIAKELIDR--GFLVIYRTSESLI-KDLKDIRFNNSIELEDILM 242 Query: 259 NIDLLLIDDM 268 N DLL+IDD+ Sbjct: 243 NCDLLIIDDL 252 >gi|170758647|ref|YP_001788952.1| DNA replication protein DnaC [Clostridium botulinum A3 str. Loch Maree] gi|169405636|gb|ACA54047.1| dnaC family protein [Clostridium botulinum A3 str. Loch Maree] Length = 325 Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 14/132 (10%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N +FI + G GKT L IA + R VVY TA+ + S DN +L+D Sbjct: 185 NFMFI-GTPGTGKTFLSNCIAKELLDRGN--FVVYRTADELIQNLRSIKFDN-DKHLEDI 240 Query: 257 LRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 L N DLL+IDD+ +F + +L F + LL K ++++ + L+S Sbjct: 241 LLNCDLLIIDDLGTESINEFSKVEL----FNFINKKLLMRKKMIISSNYSIETILKSYSE 296 Query: 311 RIRSRLQGGVSV 322 RI SRL G ++ Sbjct: 297 RISSRLLGNFTL 308 >gi|332982999|ref|YP_004464440.1| IstB domain-containing protein ATP-binding protein [Mahella australiensis 50-1 BON] gi|332700677|gb|AEE97618.1| IstB domain protein ATP-binding protein [Mahella australiensis 50-1 BON] Length = 225 Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust. Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 17/144 (11%) Query: 134 INTNISKSPIILGKQTISPV----FGSPLDSRF---VFSTFIEGSSNRVALTAAQSIAEV 186 IN N ++ ++ KQ V S L RF F F+ R AL A + A Sbjct: 16 INKNQQEAKALMIKQRQEKVSELLIQSGLGKRFQNKTFDNFVSAGQLRNALEQATAFA-- 73 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI- 245 G+ V+ L + VG+GKTHL AI N KR VV+ + + R Sbjct: 74 --AGFPAVK--GLLLTGPVGVGKTHLAAAIVNELTKRM--YVVVFGNSISIISRIKQTYG 127 Query: 246 -RDNCALNLKDSLRNIDLLLIDDM 268 L++ ++L ++DLL+IDD+ Sbjct: 128 KTGESELDIINALTSVDLLVIDDL 151 >gi|307544884|ref|YP_003897363.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581] gi|307216908|emb|CBV42178.1| K10763 DnaA-homolog protein [Halomonas elongata DSM 2581] Length = 233 Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 78/181 (43%), Gaps = 20/181 (11%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ + G+G++HLLQA +A+ + + R +YL E + L L++ R Sbjct: 47 LYLWGADGVGRSHLLQAACHAASDQ--DRRALYLPLE--------ELGHFPPLMLEEVER 96 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 L + D + + K + H N L D ++++ AA PP +L P + SRL Sbjct: 97 LDLLAIDDLDRVVGRKRWEEALFHAFNRLRDDGRRLIVAASAPPRQLAVTLPDLASRLTW 156 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG-RELDGAFNQ 377 G++ + D + R L+ R E P VAR + G R L+ F Sbjct: 157 GMTFQVPGLDDQGRLEALRLRAGGRGMELPD---------EVARYILHRGPRRLEALFEV 207 Query: 378 L 378 L Sbjct: 208 L 208 >gi|295706839|ref|YP_003599914.1| primosomal protein DnaI [Bacillus megaterium DSM 319] gi|294804498|gb|ADF41564.1| primosomal protein DnaI [Bacillus megaterium DSM 319] Length = 310 Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L++H S G+GKT+ L AIANA +++ ++Y+ F+ + +D Sbjct: 159 KMKALYLHGSFGVGKTYFLGAIANALAEKKVKSTILYVPE--FLRELKGSFQDQSFNEKI 216 Query: 255 DSLRNIDLLLIDDM 268 + ++ + +L++DD+ Sbjct: 217 EYVKKVPVLMLDDL 230 >gi|254522116|ref|ZP_05134171.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14] gi|219719707|gb|EED38232.1| DnaA regulatory inactivator Hda [Stenotrophomonas sp. SKA14] Length = 235 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 63/232 (27%), Positives = 98/232 (42%), Gaps = 33/232 (14%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P D R TFI AL ++IA SH + +++ + G GKTH QA+ Sbjct: 13 PRDQRL--ETFIGAPDG--ALAQLRAIAVGASHDW-------VYLEGAAGTGKTH--QAL 59 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KL 275 A S Q Y+ R +A+ D L + +L+ +D + + G + Sbjct: 60 AMCSSAEQAGRLPTYVPLASAAGRVRAAL---------DGLESRELVALDGLDEVAGSRE 110 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + N + V+ A + P EL L P +RSRL V V L D E R ++ Sbjct: 111 DEIALFDFHNRARAAGVTVLYTAQKAPGELGLLLPDLRSRLGQCVRVLLQPLDEEGRAAV 170 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFA 385 L+ R A+ + L I+E + + ++ +GREL G L + R S A Sbjct: 171 LRER-ALRR----GLAIDEAAIEWL---LSHTGRELGGLITLLDWLDRESLA 214 >gi|28378227|ref|NP_785119.1| primosomal protein DnaI [Lactobacillus plantarum WCFS1] gi|254556434|ref|YP_003062851.1| primosomal protein DnaI [Lactobacillus plantarum JDM1] gi|308180378|ref|YP_003924506.1| primosomal protein DnaI [Lactobacillus plantarum subsp. plantarum ST-III] gi|28271062|emb|CAD63967.1| primosomal protein DnaI [Lactobacillus plantarum WCFS1] gi|254045361|gb|ACT62154.1| primosomal protein DnaI [Lactobacillus plantarum JDM1] gi|308045869|gb|ADN98412.1| primosomal protein DnaI [Lactobacillus plantarum subsp. plantarum ST-III] Length = 311 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 5/104 (4%) Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN-PLFIHASVGLGKTHLLQAIANASIKRQ 224 T+ + AL AA +D++ R + L+++ S G+GKT+LL +ANA + Sbjct: 128 TYDQDGDRATALMAALDF--IDAYTQAPKRFHRGLYLYGSFGVGKTYLLGGMANALAAKG 185 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 N +++ + F +I +N + + D+++ +L+IDD+ Sbjct: 186 FNTTLIHFPS--FAVEMKRSISNNTSADKVDAIKRAPILMIDDI 227 >gi|152971350|ref|YP_001336459.1| DNA replication initiation factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206580464|ref|YP_002237176.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342] gi|238895946|ref|YP_002920682.1| DNA replication initiation factor [Klebsiella pneumoniae NTUH-K2044] gi|262042106|ref|ZP_06015281.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288934116|ref|YP_003438175.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22] gi|290508321|ref|ZP_06547692.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55] gi|269969359|sp|B5XNQ6|HDA_KLEP3 RecName: Full=DnaA-homolog protein hda gi|269969360|sp|A6TCA8|HDA_KLEP7 RecName: Full=DnaA-homolog protein hda gi|150956199|gb|ABR78229.1| DNA replication initiation factor [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|206569522|gb|ACI11298.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae 342] gi|238548264|dbj|BAH64615.1| DNA replication initiation factor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040536|gb|EEW41632.1| DnaA regulatory inactivator Hda [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|288888845|gb|ADC57163.1| DnaA regulatory inactivator Hda [Klebsiella variicola At-22] gi|289777715|gb|EFD85712.1| DnaA regulatory inactivator Hda [Klebsiella sp. 1_1_55] Length = 225 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY ++I + G G++HLL A A A + Sbjct: 10 TFASFWPGD-NPSLLAALQNVLRQEHSGY-------IYIWSREGAGRSHLLHA-ACAELS 60 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + + + + L+ ID+++ + G + + Sbjct: 61 QRGD-AVGYVPLDKRTWFVPEVL---------EGMEQLALVCIDNIECVAGDEPWEMAIF 110 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 +L N +L+S K +++ DRPP +L P + SRL G Sbjct: 111 NLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 149 >gi|227892832|ref|ZP_04010637.1| primosomal protein DnaI [Lactobacillus ultunensis DSM 16047] gi|227865334|gb|EEJ72755.1| primosomal protein DnaI [Lactobacillus ultunensis DSM 16047] Length = 305 Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 4/73 (5%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + N V++L F+ AS DN ++L++ +R Sbjct: 153 LYLSGDFGVGKTYILAGLANYVVT-NFNKNVIFLHVPTFIAGLASHFDDNSRMSLQEEIR 211 Query: 259 ---NIDLLLIDDM 268 + DLL++DD+ Sbjct: 212 RLSDCDLLIMDDI 224 >gi|294501491|ref|YP_003565191.1| primosomal protein DnaI [Bacillus megaterium QM B1551] gi|294351428|gb|ADE71757.1| primosomal protein DnaI [Bacillus megaterium QM B1551] Length = 310 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 ++ L++H S G+GKT+ L AIANA +++ ++Y+ F+ + +D Sbjct: 159 KMKALYLHGSFGVGKTYFLGAIANALAEKKVKSTILYVPE--FLRELKGSFQDQSFNEKI 216 Query: 255 DSLRNIDLLLIDDM 268 + ++ + +L++DD+ Sbjct: 217 EYVKKVPVLMLDDL 230 >gi|148381547|ref|YP_001256088.1| putative DNA replication protein DnaC [Clostridium botulinum A str. ATCC 3502] gi|153932777|ref|YP_001385921.1| DNA replication protein DnaC [Clostridium botulinum A str. ATCC 19397] gi|153935133|ref|YP_001389328.1| DNA replication protein DnaC [Clostridium botulinum A str. Hall] gi|148291031|emb|CAL85168.1| DNA replication protein [Clostridium botulinum A str. ATCC 3502] gi|152928821|gb|ABS34321.1| dnaC family protein [Clostridium botulinum A str. ATCC 19397] gi|152931047|gb|ABS36546.1| dnaC family protein [Clostridium botulinum A str. Hall] Length = 325 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 20/175 (11%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDS------HGYTTVRLNPLFIHASVGLGKTHLL 213 S F F F ++ + T ++I ++ + + T+ N +FI + G GKT L Sbjct: 142 SNFNFEYFTNEKTDFHSDTPRKNIEKILNKMWHFIENFDTIDENFMFI-GTPGTGKTFLS 200 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM----- 268 IA + R VVY TA+ + S I+ + +L+D L N DLL+IDD+ Sbjct: 201 NCIAKELLDRGN--FVVYRTADELIQNLRS-IKFSNDKHLEDILINCDLLIIDDLGTESI 257 Query: 269 -QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +F + +L F + LL K ++++ + L+S RI SRL G ++ Sbjct: 258 NEFSKVEL----FNFINKKLLMRKKMIISSNYSIETILKSYSERISSRLLGNFTL 308 >gi|227500516|ref|ZP_03930572.1| DNA replication protein [Anaerococcus tetradius ATCC 35098] gi|227217367|gb|EEI82695.1| DNA replication protein [Anaerococcus tetradius ATCC 35098] Length = 275 Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 13/120 (10%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SP ++ F F+ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPNQHQYTFEKFLNEKGQAYKVAYNYAKSFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KT+L +IAN I+R+ ++V + + + + + + D+L NI LL++DD+ Sbjct: 125 KTYLACSIANELIERE-QVKVKIMNLSQVINQIQKSAFKVDSNEIIDNLSNIPLLILDDL 183 >gi|307067491|ref|YP_003876457.1| DNA replication protein [Streptococcus pneumoniae AP200] gi|306409028|gb|ADM84455.1| DNA replication protein [Streptococcus pneumoniae AP200] Length = 275 Score = 42.0 bits (97), Expect = 0.23, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 15/121 (12%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F F+ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYTFEKFLNEKGQAYKVAYNYAKSFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 KT+L +IAN I+R Q ++++ L+ + ++ D + + D+L + LL++DD Sbjct: 125 KTYLACSIANELIEREQVKVKIMNLSQVINQIQKSAFKLD--SNEIIDNLSKVPLLILDD 182 Query: 268 M 268 + Sbjct: 183 L 183 >gi|315303327|ref|ZP_07873956.1| primosomal protein DnaI [Listeria ivanovii FSL F6-596] gi|313628307|gb|EFR96811.1| primosomal protein DnaI [Listeria ivanovii FSL F6-596] Length = 307 Score = 42.0 bits (97), Expect = 0.24, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ L+IH S G GK++LL AIA + + +VYL FM +I DN Sbjct: 157 RVKALYIHGSFGTGKSYLLGAIAKELALKGISTTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|330007332|ref|ZP_08305940.1| DnaA regulatory inactivator Hda [Klebsiella sp. MS 92-3] gi|328535477|gb|EGF61942.1| DnaA regulatory inactivator Hda [Klebsiella sp. MS 92-3] Length = 225 Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 75/159 (47%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ + GY ++I + G G++HLL A A A + Sbjct: 10 TFASFWPGD-NPSLLAALQNVLRQEHSGY-------IYIWSREGAGRSHLLHA-ACAELS 60 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + + + + L+ ID+++ + G + + Sbjct: 61 QRGD-AVGYVPLDKRTWFVPEVL---------EGMEQLALVCIDNIECVAGDEPWEMAIF 110 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 +L N +L+S K +++ DRPP +L P + SRL G Sbjct: 111 NLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWG 149 >gi|307332489|ref|ZP_07611549.1| IstB domain protein ATP-binding protein [Streptomyces violaceusniger Tu 4113] gi|306881870|gb|EFN12996.1| IstB domain protein ATP-binding protein [Streptomyces violaceusniger Tu 4113] Length = 279 Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust. Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 4/107 (3%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GK+HL +A+AN +I ++V + T E A D+ + DL+++ Sbjct: 134 GTGKSHLAEALANKAIDE--GMKVSWFTLESLTAHLGRATVDSTVSKAVAKITRSDLIIV 191 Query: 266 DDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 DD+ L G+ F L+++ + + V+ ++ PS +S+ P+ Sbjct: 192 DDIGMLPSGQAAAEAFYCLIDAAYER-RSVIVTSNLHPSGFDSIMPK 237 >gi|300114434|ref|YP_003761009.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113] gi|299540371|gb|ADJ28688.1| DnaA regulatory inactivator Hda [Nitrosococcus watsonii C-113] Length = 232 Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 75/186 (40%), Gaps = 19/186 (10%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F + ++NR + A + + + L + G+GKTHLL +A I Sbjct: 18 FENYYLAAANREPIAAVERCGQGKGERF-------LCLWGPSGVGKTHLL--LAACQIAA 68 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 Q + RV Y+ + A + L + IDD+ + G + + H Sbjct: 69 QESERVAYVPLKRV---------GIMAPEILGGLEAAAFVAIDDIDHVAGYRHWEESLLH 119 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 L N L + +++ A+ PS L L P +RSRL GV L D + + L+ + A Sbjct: 120 LYNLLQEEQGRLLLASTDKPSTLHWLLPDLRSRLGWGVGYQLQPLDDHQKHAALQFQAAK 179 Query: 343 SQKEDP 348 E P Sbjct: 180 RGLELP 185 >gi|117925602|ref|YP_866219.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp. MC-1] gi|117609358|gb|ABK44813.1| regulatory inactivation of DnaA Hda protein [Magnetococcus sp. MC-1] Length = 247 Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 14/168 (8%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD + + G+ N +A+ + + ++ L + + G GKTHLLQA Sbjct: 13 PLDPVLSWENLVVGAHNTIAIHGVRQL--------EAAKVPGLILTGAAGAGKTHLLQA- 63 Query: 217 ANASIKRQPNLR-VVYL---TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 A AS++ Q VYL T + A + D + L ID+++ L+ Sbjct: 64 AVASVRAQYGEHAAVYLDLATLSKHLENQPKAHSEALLSRFIDRYGSCRLAAIDELELLE 123 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 + +Q +L N L + ++ A PS + L +RSRL G Sbjct: 124 HAVGLQEGVLYLYNRLRVAGGHLLGAGREDPSTMSGLRDDLRSRLLWG 171 >gi|266620977|ref|ZP_06113912.1| ATPase [Clostridium hathewayi DSM 13479] gi|288867398|gb|EFC99696.1| ATPase [Clostridium hathewayi DSM 13479] Length = 155 Score = 42.0 bits (97), Expect = 0.27, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 16/145 (11%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W LK HS+ + V ++VP +I+ +Y + K+ EE + G E V V Sbjct: 27 FKTWLLPLKVHSINGDTVTVTVPDVEFLGYIRKKY-GFLLKITIEE---VTGFECNVDFV 82 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 VE + K NT I+ + + + S + + L+ ++ F TF+ G++N Sbjct: 83 ----VENQVPQEEVPKAQTGNTLINNA---MNTVSQSAIINANLNPKYTFDTFVVGANNN 135 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPL 199 +A A+ ++AE Y NPL Sbjct: 136 LAHAASLAVAESPGEIY-----NPL 155 >gi|47093097|ref|ZP_00230874.1| primosomal protein DnaI [Listeria monocytogenes str. 4b H7858] gi|254852183|ref|ZP_05241531.1| primosomal protein DnaI [Listeria monocytogenes FSL R2-503] gi|300764774|ref|ZP_07074764.1| primosomal protein DnaI [Listeria monocytogenes FSL N1-017] gi|47018537|gb|EAL09293.1| primosomal protein DnaI [Listeria monocytogenes str. 4b H7858] gi|258605488|gb|EEW18096.1| primosomal protein DnaI [Listeria monocytogenes FSL R2-503] gi|300514450|gb|EFK41507.1| primosomal protein DnaI [Listeria monocytogenes FSL N1-017] gi|328465595|gb|EGF36824.1| primosomal protein DnaI [Listeria monocytogenes 1816] Length = 307 Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 157 RVKGLFIHGSFGTGKSYLLGALAKELALKGISTTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|16803600|ref|NP_465085.1| primosomal protein DnaI [Listeria monocytogenes EGD-e] gi|46907791|ref|YP_014180.1| primosomal protein DnaI [Listeria monocytogenes serotype 4b str. F2365] gi|224499782|ref|ZP_03668131.1| primosomal protein DnaI [Listeria monocytogenes Finland 1988] gi|224501500|ref|ZP_03669807.1| primosomal protein DnaI [Listeria monocytogenes FSL R2-561] gi|254828205|ref|ZP_05232892.1| primosomal protein DnaI [Listeria monocytogenes FSL N3-165] gi|254831961|ref|ZP_05236616.1| primosomal protein DnaI [Listeria monocytogenes 10403S] gi|254994222|ref|ZP_05276412.1| primosomal protein DnaI [Listeria monocytogenes FSL J2-064] gi|255017530|ref|ZP_05289656.1| primosomal protein DnaI [Listeria monocytogenes FSL F2-515] gi|255027299|ref|ZP_05299285.1| primosomal protein DnaI [Listeria monocytogenes FSL J2-003] gi|284801951|ref|YP_003413816.1| primosomal protein DnaI [Listeria monocytogenes 08-5578] gi|284995093|ref|YP_003416861.1| primosomal protein DnaI [Listeria monocytogenes 08-5923] gi|16410989|emb|CAC99638.1| primosome component (helicase loader) DnaI [Listeria monocytogenes EGD-e] gi|46881060|gb|AAT04357.1| primosomal protein DnaI [Listeria monocytogenes serotype 4b str. F2365] gi|258600593|gb|EEW13918.1| primosomal protein DnaI [Listeria monocytogenes FSL N3-165] gi|284057513|gb|ADB68454.1| primosomal protein DnaI [Listeria monocytogenes 08-5578] gi|284060560|gb|ADB71499.1| primosomal protein DnaI [Listeria monocytogenes 08-5923] Length = 307 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 157 RVKGLFIHGSFGTGKSYLLGALAKELALKGISTTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|301059120|ref|ZP_07200068.1| conserved hypothetical protein [delta proteobacterium NaphS2] gi|300446773|gb|EFK10590.1| conserved hypothetical protein [delta proteobacterium NaphS2] Length = 326 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E IQ +V + Y I++ +L+ ++R T PR VA+YL++++ +I + + R +++ Sbjct: 232 EGIQELVCRTYGITKGELVKSKRG-TFNEPRGVAIYLTRMIRSDGLMDICKDYNLRKYSS 290 Query: 472 VLHAVRKVEKMLETDITLKKEV-ELLKRLI 500 V V+K L D + V EL ++L+ Sbjct: 291 ASSVVENVKKKLLKDRKFRNRVNELSQKLV 320 >gi|289434840|ref|YP_003464712.1| primosomal protein DnaI [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171084|emb|CBH27626.1| primosomal protein DnaI [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633098|gb|EFR99997.1| primosomal protein DnaI [Listeria seeligeri FSL N1-067] gi|313637675|gb|EFS03056.1| primosomal protein DnaI [Listeria seeligeri FSL S4-171] Length = 307 Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ L+IH S G GK++LL AIA + + +VYL FM +I DN Sbjct: 157 RVKALYIHGSFGTGKSYLLGAIAKELALKGISTTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|227889525|ref|ZP_04007330.1| primosomal protein DnaI [Lactobacillus johnsonii ATCC 33200] gi|227850003|gb|EEJ60089.1| primosomal protein DnaI [Lactobacillus johnsonii ATCC 33200] Length = 299 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +ANA I RQ + RVV+L F+ S +DN + D + Sbjct: 154 LYLTGDFGVGKTYILAGVANA-IARQGS-RVVFLHVPSFIASLGSHFQDNSLNDEIDRIA 211 Query: 259 NIDLLLIDDM 268 + +L+ DD+ Sbjct: 212 SAPVLIFDDI 221 >gi|225551513|ref|ZP_03772459.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379328|gb|EEH01693.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 321 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 14/103 (13%) Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT------- 233 QS + D+ +L FI+ G+GK+ + QA N +I + NL++ Y+T Sbjct: 145 QSANKEDNITTNDQQLKSAFIYGDFGVGKSIITQAYTN-TISLKYNLKIAYITLNELFKN 203 Query: 234 -AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 ++F ++ I D+ L + L NID+L+IDD F G L Sbjct: 204 VIQFFNYK---DISDSVVNELINELSNIDVLVIDD--FSSGNL 241 >gi|185179166|ref|ZP_02964873.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|184208900|gb|EDU05943.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 5 str. ATCC 27817] Length = 321 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 14/103 (13%) Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT------- 233 QS + D+ +L FI+ G+GK+ + QA N +I + NL++ Y+T Sbjct: 145 QSANKEDNITTNDQQLKSAFIYGDFGVGKSIITQAYTN-TISLKYNLKIAYITLNELFKN 203 Query: 234 -AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 ++F ++ I D+ L + L NID+L+IDD F G L Sbjct: 204 VIQFFNYK---DISDSVVNELINELSNIDVLVIDD--FSSGNL 241 >gi|268319911|ref|YP_003293567.1| Primosomal protein DnaI [Lactobacillus johnsonii FI9785] gi|262398286|emb|CAX67300.1| Primosomal protein DnaI [Lactobacillus johnsonii FI9785] Length = 299 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +ANA I RQ + RVV+L F+ S +DN + D + Sbjct: 154 LYLTGDFGVGKTYILAGVANA-IARQGS-RVVFLHVPSFIASLGSHFQDNSLNDEIDRIA 211 Query: 259 NIDLLLIDDM 268 + +L+ DD+ Sbjct: 212 SAPVLIFDDI 221 >gi|171920989|ref|ZP_02696373.2| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188024221|ref|ZP_02996926.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518631|ref|ZP_03004074.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524485|ref|ZP_03004490.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867665|ref|ZP_03079667.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273721|ref|ZP_03206256.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554539|ref|YP_002284705.1| hypothetical protein UUR10_0311 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|171903020|gb|EDT49309.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188018876|gb|EDU56916.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997801|gb|EDU66898.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195659706|gb|EDX53086.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660722|gb|EDX53977.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249749|gb|EDY74530.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209542040|gb|ACI60269.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 321 Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust. Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 14/103 (13%) Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT------- 233 QS + D+ +L FI+ G+GK+ + QA N +I + NL++ Y+T Sbjct: 145 QSANKEDNITTNDQQLKSAFIYGDFGVGKSIITQAYTN-TISLKYNLKIAYITLNELFKN 203 Query: 234 -AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 ++F ++ I D+ L + L NID+L+IDD F G L Sbjct: 204 VIQFFNYK---DISDSVVNELINELSNIDVLVIDD--FSSGNL 241 >gi|329667762|gb|AEB93710.1| Helicase loader DnaI [Lactobacillus johnsonii DPC 6026] Length = 299 Score = 41.6 bits (96), Expect = 0.30, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +ANA I RQ + RVV+L F+ S +DN + D + Sbjct: 154 LYLTGDFGVGKTYILAGVANA-IARQGS-RVVFLHVPSFIASLGSHFQDNSLNDEIDRIA 211 Query: 259 NIDLLLIDDM 268 + +L+ DD+ Sbjct: 212 SAPVLIFDDI 221 >gi|299133489|ref|ZP_07026683.1| Chromosomal replication initiator DnaA domain protein [Afipia sp. 1NLS2] gi|298591325|gb|EFI51526.1| Chromosomal replication initiator DnaA domain protein [Afipia sp. 1NLS2] Length = 119 Score = 41.6 bits (96), Expect = 0.31, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 2/60 (3%) Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAMYL + SF IGR F RD TTV +A R +E+ E D+ + L+R+++ Sbjct: 56 RQVAMYLCHVGFALSFEGIGRLF-HRDRTTVAYACRVIEERRE-DVWFDSRIAALERVVA 113 >gi|90020543|ref|YP_526370.1| regulatory inactivation of DnaA Hda protein [Saccharophagus degradans 2-40] gi|89950143|gb|ABD80158.1| regulatory inactivation of DnaA Hda protein [Saccharophagus degradans 2-40] Length = 239 Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 22/181 (12%) Query: 145 LGKQTISPV---FGSPLDSRFVFSTFIEG-SSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + ++T +PV G L F+ F+ SN + A Q A + G V Sbjct: 1 MNEKTSTPVQLSLGVSLREETTFANFLGAVGSNAQPVAALQQFAA--NEGEQNV-----L 53 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 + + G G THLLQA+ + + + L V YL + + A +I C D L + Sbjct: 54 VWGAPGSGLTHLLQAVCHRAYEH--GLAVQYLPLQDMVGYDAQSI---C-----DGLEQM 103 Query: 261 DLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 ++ +D + + G K + HL N+L D+ +++ A+ P L P ++SR+ G Sbjct: 104 QVVCLDGIDHICGIKSWEQGVFHLYNNLRDAGHRLLIASHTSPPALPLTLPDLKSRVLGS 163 Query: 320 V 320 V Sbjct: 164 V 164 >gi|238853769|ref|ZP_04644135.1| primosomal protein DnaI [Lactobacillus gasseri 202-4] gi|238833578|gb|EEQ25849.1| primosomal protein DnaI [Lactobacillus gasseri 202-4] Length = 299 Score = 41.6 bits (96), Expect = 0.33, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +ANA I RQ + RVV+L F+ S +DN + D + Sbjct: 154 LYLTGDFGVGKTYILAGLANA-IARQGS-RVVFLHVPSFIASLGSYFQDNSLSDEIDRIA 211 Query: 259 NIDLLLIDDM 268 + +L+ DD+ Sbjct: 212 SAPVLVFDDI 221 >gi|116872989|ref|YP_849770.1| primosomal protein DnaI [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741867|emb|CAK20991.1| chromosomal replication initiator protein DnaA [Listeria welshimeri serovar 6b str. SLCC5334] Length = 307 Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 157 RVKGLFIHGSFGTGKSYLLGALAKELALKGVSTTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|16800663|ref|NP_470931.1| primosomal protein DnaI [Listeria innocua Clip11262] gi|16414082|emb|CAC96826.1| primosome component (helicase loader) DnaI [Listeria innocua Clip11262] gi|313623626|gb|EFR93789.1| primosomal protein DnaI [Listeria innocua FSL J1-023] Length = 307 Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 157 RVKGLFIHGSFGTGKSYLLGALAKELALKGISTTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|313889122|ref|ZP_07822778.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844862|gb|EFR32267.1| conserved hypothetical protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 275 Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 64/122 (52%), Gaps = 17/122 (13%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SP+ ++ F ++ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPIQHKYNFEKYLNEKGQAYKVAYNYAKSFEQMKKDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYF-MWRFASAIRDNCALNLKDSLRNIDLLLID 266 KT+L +IAN I+R Q ++++ L+ + + A + N +N +L NI LL++D Sbjct: 125 KTYLACSIANELIERKQVKVKIMNLSQVINQIQKSAFKLDSNEIIN---NLSNIPLLILD 181 Query: 267 DM 268 D+ Sbjct: 182 DL 183 >gi|307823566|ref|ZP_07653795.1| DnaA regulatory inactivator Hda [Methylobacter tundripaludum SV96] gi|307735551|gb|EFO06399.1| DnaA regulatory inactivator Hda [Methylobacter tundripaludum SV96] Length = 234 Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust. Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 20/161 (12%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F G+++ + Q IA + +F+ G GKTHLLQA + + Sbjct: 16 TFDDFFPGANHEIITHLQQCIAGLGEQ--------QIFLWGKSGQGKTHLLQACCHRA-- 65 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQH-EFC 281 + NL Y + + D LN L D++ D+++ + G F Sbjct: 66 QNQNLSSFYFDLS------QAELPDPSLLN---GLDEYDVVCFDNIERIAGNATWELAFF 116 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 + N D +++ +A P+E+ P +++RL G+S+ Sbjct: 117 NFFNQHRDRGHKLIVSASSAPNEIAIQLPDLKTRLNWGLSL 157 >gi|146296387|ref|YP_001180158.1| DNA replication protein DnaC [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409963|gb|ABP66967.1| replicative DNA helicase loader DnaI [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 345 Score = 41.6 bits (96), Expect = 0.35, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 12/98 (12%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA----EYFMWRFASAIR--DNCALN 252 L + S GLGKT L IA I ++ V++L + E +++ +R D Sbjct: 193 LLFYGSTGLGKTFLAHCIAKEIIDKKKT--VIFLDSIAFFEILKEKYSKMVRLYDEVDDE 250 Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQHEFCH-LLNSLLD 289 SL +DLL+IDD+ +GK EFCH + SLLD Sbjct: 251 EYKSLEEVDLLIIDDLGN-EGK--SPEFCHGVFQSLLD 285 >gi|255528537|ref|ZP_05395317.1| DNA replication protein DnaC [Clostridium carboxidivorans P7] gi|296186829|ref|ZP_06855230.1| DNA replication protein DnaC [Clostridium carboxidivorans P7] gi|255507770|gb|EET84230.1| DNA replication protein DnaC [Clostridium carboxidivorans P7] gi|296048543|gb|EFG87976.1| DNA replication protein DnaC [Clostridium carboxidivorans P7] Length = 244 Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust. Identities = 45/128 (35%), Positives = 63/128 (49%), Gaps = 6/128 (4%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N LF+ S G GK+ L IA + R VVY TAE + IR N + L+D Sbjct: 102 NMLFLGNS-GTGKSFLSYCIAKELLDRGH--LVVYRTAETLIHDLK-QIRFNNSDELEDL 157 Query: 257 LRNIDLLLIDDMQFLQ-GKLIQHEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRS 314 L N DLL+IDD+ Q + E +LLN LL + K +++ L++ RI S Sbjct: 158 LINCDLLIIDDLGSEQITDFSKTELFNLLNIKLLKNRKMLISTNCGLEELLKNYSERISS 217 Query: 315 RLQGGVSV 322 RL G ++ Sbjct: 218 RLLGEFTL 225 >gi|153815037|ref|ZP_01967705.1| hypothetical protein RUMTOR_01254 [Ruminococcus torques ATCC 27756] gi|317501876|ref|ZP_07960061.1| hypothetical protein HMPREF1026_02005 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088611|ref|ZP_08337522.1| hypothetical protein HMPREF1025_01105 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847605|gb|EDK24523.1| hypothetical protein RUMTOR_01254 [Ruminococcus torques ATCC 27756] gi|316896766|gb|EFV18852.1| hypothetical protein HMPREF1026_02005 [Lachnospiraceae bacterium 8_1_57FAA] gi|330407568|gb|EGG87068.1| hypothetical protein HMPREF1025_01105 [Lachnospiraceae bacterium 3_1_46FAA] Length = 332 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL---N 252 N LF + SVG+GKT L IA ++R+ V+Y +A D + N Sbjct: 183 FNNLFFYGSVGVGKTFLSTCIAREIMERE--FSVLYFSAPQLFSVLTQTKFDRNDVDSKN 240 Query: 253 LKDSLRNIDLLLIDDM 268 + D + N DLL+IDD+ Sbjct: 241 MNDYIFNCDLLIIDDL 256 >gi|148653240|ref|YP_001280333.1| DNA replication initiation ATPase-like protein [Psychrobacter sp. PRwf-1] gi|148572324|gb|ABQ94383.1| regulatory inactivation of DnaA Hda protein [Psychrobacter sp. PRwf-1] Length = 270 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 35/156 (22%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 + ++I S GKTHLL AI E +M SAI L+LK+ Sbjct: 40 IGQMYIFGSAATGKTHLLSAI-----------------CESYMEMDKSAI----CLSLKE 78 Query: 256 ----------SLRNIDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 SL + DL+ IDD++ ++ + Q HL+N + Q++ AA P +E Sbjct: 79 LLHTDVAVLASLESFDLVAIDDLEAIKDSREWQEAIFHLINRSREGRGQLIFAAKTPATE 138 Query: 305 LESLDPRIRSRL--QGGVSVPLGLHDYEMRFSILKN 338 L P + +RL VP G HD R ++L++ Sbjct: 139 LPFELPDLLTRLIQSPAFRVPEG-HDIADRKAMLES 173 >gi|313618754|gb|EFR90659.1| primosomal protein DnaI [Listeria innocua FSL S4-378] Length = 310 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 160 RVKGLFIHGSFGTGKSYLLGALAKELALKGISTTLVYLPE--FMREVKQSISDNTVGEKI 217 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 218 QFAKETEVLMLDDI 231 >gi|126667545|ref|ZP_01738515.1| DNA replication initiation factor [Marinobacter sp. ELB17] gi|126627971|gb|EAZ98598.1| DNA replication initiation factor [Marinobacter sp. ELB17] Length = 238 Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust. Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 12/134 (8%) Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GK+HLLQA+ + + + + + +T + F + L +L+ +DD Sbjct: 61 GKSHLLQALCHYAESQSLSAVCISITE---LGPFGP--------DALTGLEQFNLVCLDD 109 Query: 268 MQFLQGKLIQHEFC-HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + + G+ E HL N +LD+ Q+V + P+ L + P + SRL G+++ LG+ Sbjct: 110 LDSVVGQTGWEEAVFHLYNRMLDAGHQLVVSLSDVPASLPFILPDLSSRLSHGLTLQLGI 169 Query: 327 HDYEMRFSILKNRL 340 + R IL R+ Sbjct: 170 YRDSDRKRILMARV 183 >gi|262379394|ref|ZP_06072550.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SH164] gi|262298851|gb|EEY86764.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SH164] Length = 235 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 26/135 (19%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 +N +I+ + G GK+HLL AI ++ +M SAI+ + L L D Sbjct: 39 MNRFYIYGAAGSGKSHLLSAICDS-----------------YMEVGKSAIKVSL-LELLD 80 Query: 256 -------SLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 SL DL+ +DD++ + G Q HL+N + Q++ ++ P EL+ Sbjct: 81 APIEAITSLEKYDLVALDDIEAISGVPHWQRAVFHLINYNNEEGGQLIFSSRFAPMELKL 140 Query: 308 LDPRIRSRLQGGVSV 322 P ++SRL VSV Sbjct: 141 ELPDLQSRLTQAVSV 155 >gi|187777406|ref|ZP_02993879.1| hypothetical protein CLOSPO_00973 [Clostridium sporogenes ATCC 15579] gi|187774334|gb|EDU38136.1| hypothetical protein CLOSPO_00973 [Clostridium sporogenes ATCC 15579] Length = 325 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 14/132 (10%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N +FI + G GKT L IA + R VVY TA+ + S I+ N +L+D Sbjct: 185 NFMFI-GNPGTGKTFLSNCIAKELLDRGN--FVVYRTADELIQNLRS-IKFNNDKHLEDI 240 Query: 257 LRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 L N DLL+IDD+ +F + +L F + LL K ++++ S L++ Sbjct: 241 LINCDLLIIDDLGTESINEFSKVEL----FNFINKKLLMRKKMIISSNYSIESILKNYSE 296 Query: 311 RIRSRLQGGVSV 322 RI SRL G ++ Sbjct: 297 RISSRLLGNFTL 308 >gi|311110328|ref|ZP_07711725.1| primosome component (helicase loader) [Lactobacillus gasseri MV-22] gi|311065482|gb|EFQ45822.1| primosome component (helicase loader) [Lactobacillus gasseri MV-22] Length = 300 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +ANA I RQ + RVV+L F+ S +DN + D + Sbjct: 155 LYLTGDFGVGKTYILAGLANA-IARQGS-RVVFLHVPSFIASLGSHFQDNSLSDEIDRIA 212 Query: 259 NIDLLLIDDM 268 + +L+ DD+ Sbjct: 213 SAPVLVFDDI 222 >gi|291537551|emb|CBL10663.1| ATP-dependent transcriptional regulator [Roseburia intestinalis M50/1] Length = 787 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 19/88 (21%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LF A G GKT +A+A ++ + LR SA +CA+ S + Sbjct: 25 LFFSAPCGFGKT----VLADALLRGRNVLR-------------QSAADPDCAI--PPSAQ 65 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNS 286 + D+LLIDD+QF+Q + Q C L+ S Sbjct: 66 DWDILLIDDLQFMQEEAGQQALCELIRS 93 >gi|212695812|ref|ZP_03303940.1| hypothetical protein ANHYDRO_00345 [Anaerococcus hydrogenalis DSM 7454] gi|212677187|gb|EEB36794.1| hypothetical protein ANHYDRO_00345 [Anaerococcus hydrogenalis DSM 7454] Length = 284 Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 19/136 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-------EYFMWRFASAIRDNCAL 251 L+I VG GKT L+ +IA + R N V+YLTA +++ F+ +D Sbjct: 144 LYIFGEVGRGKTFLINSIAKEILDR--NYSVLYLTATKLFSFMNDYLYAFSEKKQD---- 197 Query: 252 NLKDSLRNI---DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE-LE 306 L++S I DLL+IDD+ + + ++N + + K ++ +++ E +E Sbjct: 198 -LQESYDLIFDSDLLIIDDLGSENDRNSNEANLFEIVNDRIINKKPIIFSSNYSEDEIME 256 Query: 307 SLDPRIRSRLQGGVSV 322 PRI SR+ G V Sbjct: 257 VYGPRIYSRIIGSSDV 272 >gi|116630043|ref|YP_815215.1| primosomal protein DnaI [Lactobacillus gasseri ATCC 33323] gi|282851335|ref|ZP_06260700.1| primosomal protein DnaI [Lactobacillus gasseri 224-1] gi|116095625|gb|ABJ60777.1| replicative DNA helicase loader DnaI [Lactobacillus gasseri ATCC 33323] gi|282557303|gb|EFB62900.1| primosomal protein DnaI [Lactobacillus gasseri 224-1] Length = 299 Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +ANA I RQ + RVV+L F+ S +DN + D + Sbjct: 154 LYLTGDFGVGKTYILAGLANA-IARQGS-RVVFLHVPSFIASLGSHFQDNSLSDEIDRIA 211 Query: 259 NIDLLLIDDM 268 + +L+ DD+ Sbjct: 212 SAPVLVFDDI 221 >gi|255319431|ref|ZP_05360646.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82] gi|255303499|gb|EET82701.1| DnaA regulatory inactivator Hda [Acinetobacter radioresistens SK82] Length = 239 Score = 41.2 bits (95), Expect = 0.39, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 26/135 (19%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 +N +I+ + G GK+HLL AI ++ +M SAI+ + L L D Sbjct: 43 MNRFYIYGAAGSGKSHLLSAICDS-----------------YMEVGKSAIKVSL-LELLD 84 Query: 256 -------SLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 SL DL+ +DD++ + G Q HL+N + Q++ ++ P EL+ Sbjct: 85 APIEAITSLEKYDLVALDDIEAISGVPHWQRAVFHLINYNNEEGGQLIFSSRFAPMELKL 144 Query: 308 LDPRIRSRLQGGVSV 322 P ++SRL VSV Sbjct: 145 ELPDLQSRLTQAVSV 159 >gi|47096725|ref|ZP_00234310.1| primosomal protein DnaI [Listeria monocytogenes str. 1/2a F6854] gi|217964293|ref|YP_002349971.1| primosomal protein DnaI [Listeria monocytogenes HCC23] gi|254898273|ref|ZP_05258197.1| primosomal protein DnaI [Listeria monocytogenes J0161] gi|254912234|ref|ZP_05262246.1| primosomal protein DnaI [Listeria monocytogenes J2818] gi|254931500|ref|ZP_05264859.1| primosomal protein DnaI [Listeria monocytogenes HPB2262] gi|254936562|ref|ZP_05268259.1| primosomal protein DnaI [Listeria monocytogenes F6900] gi|290893961|ref|ZP_06556937.1| primosomal protein DnaI [Listeria monocytogenes FSL J2-071] gi|47014909|gb|EAL05857.1| primosomal protein DnaI [Listeria monocytogenes str. 1/2a F6854] gi|217333563|gb|ACK39357.1| primosomal protein DnaI [Listeria monocytogenes HCC23] gi|258609156|gb|EEW21764.1| primosomal protein DnaI [Listeria monocytogenes F6900] gi|290556499|gb|EFD90037.1| primosomal protein DnaI [Listeria monocytogenes FSL J2-071] gi|293583052|gb|EFF95084.1| primosomal protein DnaI [Listeria monocytogenes HPB2262] gi|293590210|gb|EFF98544.1| primosomal protein DnaI [Listeria monocytogenes J2818] gi|307571141|emb|CAR84320.1| primosomal protein DnaI [Listeria monocytogenes L99] gi|328474914|gb|EGF45714.1| primosomal protein DnaI [Listeria monocytogenes 220] gi|332312002|gb|EGJ25097.1| Chromosomal replication initiator protein DnaA [Listeria monocytogenes str. Scott A] Length = 307 Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 157 RVKGLFIHGSFGTGKSYLLGALAKELALKGISSTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|159896622|ref|YP_001542869.1| IstB ATP binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159889661|gb|ABX02741.1| IstB domain protein ATP-binding protein [Herpetosiphon aurantiacus ATCC 23779] Length = 266 Score = 41.2 bits (95), Expect = 0.40, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 60/127 (47%), Gaps = 19/127 (14%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---D 255 L + G GKTHL AIAN +++R+ + +++ + S N + D Sbjct: 122 LLLVGGYGCGKTHLAAAIANEAVRRE--YQTIFMVVPDLLDYLRSTFGPNSEVAYDERFD 179 Query: 256 SLRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 +R+I LL++DD+ + + KL Q ++N ++ V + +L+ LD Sbjct: 180 KIRSIQLLVLDDLGAESSTAWAREKLFQ-----IINHRYNNHLPTVFTTN---VDLDKLD 231 Query: 310 PRIRSRL 316 PRI SRL Sbjct: 232 PRIASRL 238 >gi|300361193|ref|ZP_07057370.1| primosomal protein DnaI [Lactobacillus gasseri JV-V03] gi|300353812|gb|EFJ69683.1| primosomal protein DnaI [Lactobacillus gasseri JV-V03] Length = 299 Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +ANA I RQ + RVV+L F+ S +DN + D + Sbjct: 154 LYLTGDFGVGKTYILAGLANA-IARQGS-RVVFLHVPSFIASLGSHFQDNSLSDEIDRIA 211 Query: 259 NIDLLLIDDM 268 + +L+ DD+ Sbjct: 212 SAPVLVFDDI 221 >gi|254824381|ref|ZP_05229382.1| primosomal protein DnaI [Listeria monocytogenes FSL J1-194] gi|293593616|gb|EFG01377.1| primosomal protein DnaI [Listeria monocytogenes FSL J1-194] Length = 307 Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 157 RVKGLFIHGSFGTGKSYLLGALAKELALKGISSTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|227874164|ref|ZP_03992368.1| DNA replication protein DnaC [Oribacterium sinus F0268] gi|227839985|gb|EEJ50411.1| DNA replication protein DnaC [Oribacterium sinus F0268] Length = 318 Score = 41.2 bits (95), Expect = 0.41, Method: Compositional matrix adjust. Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S G GKT+ L +IA A + R + V+Y TA F+ +R+ + +D + +D+ Sbjct: 192 GSTGTGKTYFLHSIAKALLDR--GVSVLYFTATGLFEYFSKRMREE---DTEDYIEEVDV 246 Query: 263 LLIDDM 268 +LIDD+ Sbjct: 247 ILIDDL 252 >gi|255023456|ref|ZP_05295442.1| primosomal protein DnaI [Listeria monocytogenes FSL J1-208] Length = 307 Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 157 RVKGLFIHGSFGTGKSYLLGALAKELALKGISSTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|145633314|ref|ZP_01789045.1| DNA replication initiation factor [Haemophilus influenzae 3655] gi|144986160|gb|EDJ92750.1| DNA replication initiation factor [Haemophilus influenzae 3655] Length = 231 Score = 41.2 bits (95), Expect = 0.42, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I G GKTHLL+A +N + +Q V L+ + F++A+ +N L Sbjct: 44 FYIWGDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|313608611|gb|EFR84473.1| primosomal protein DnaI [Listeria monocytogenes FSL F2-208] Length = 310 Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R+ LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 160 RVKGLFIHGSFGTGKSYLLGALAKELALKGISSTLVYLPE--FMREVKQSISDNTVGEKI 217 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 218 QFAKETEVLMLDDI 231 >gi|282882758|ref|ZP_06291365.1| DNA replication protein [Peptoniphilus lacrimalis 315-B] gi|281297419|gb|EFA89908.1| DNA replication protein [Peptoniphilus lacrimalis 315-B] Length = 275 Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust. Identities = 30/118 (25%), Positives = 58/118 (49%), Gaps = 9/118 (7%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F SP ++ F ++ +G + +VA A+S +++ L + VG GKT Sbjct: 73 CFSSPNQHQYTFEKYLNEKGQAYKVAYNYARSFEQMNEDNVG------LLFYGDVGSGKT 126 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 +L +IAN I+R+ ++V + + + + + + D+L NI LL++DD+ Sbjct: 127 YLACSIANELIERE-QVKVKIMNLSQVINQIQKSAFKVDSNEIIDNLSNIPLLILDDL 183 >gi|145634445|ref|ZP_01790155.1| DNA replication initiation factor [Haemophilus influenzae PittAA] gi|145268425|gb|EDK08419.1| DNA replication initiation factor [Haemophilus influenzae PittAA] Length = 231 Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I G GKTHLL+A +N + +Q V L+ + F++A+ +N L Sbjct: 44 FYIWGDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|328724733|ref|XP_003248236.1| PREDICTED: kinesin-like protein KIF12-like [Acyrthosiphon pisum] Length = 759 Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust. Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 13/114 (11%) Query: 105 QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 G+ ++VRS L + E AS PSI P N I ++ G QTI G P F F Sbjct: 38 NGIYVIVRSRPLSTKENRASEPSIVSF-PGNGRI----LVEGFQTIGGSNG-PKSKLFSF 91 Query: 165 STFIEGSSNR---VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + E ++ + + + + E+ + G+ T F + G GKTH L Sbjct: 92 NVVFEPAATQEDIFQYSGIKKLIEMAAEGFNTT----CFCYGQTGSGKTHTLTG 141 >gi|315282483|ref|ZP_07870887.1| primosomal protein DnaI [Listeria marthii FSL S4-120] gi|313613867|gb|EFR87607.1| primosomal protein DnaI [Listeria marthii FSL S4-120] Length = 307 Score = 40.8 bits (94), Expect = 0.48, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R LFIH S G GK++LL A+A + + +VYL FM +I DN Sbjct: 157 RAKGLFIHGSFGTGKSYLLGALAKELALKGVSTTLVYLPE--FMREVKQSISDNTVGEKI 214 Query: 255 DSLRNIDLLLIDDM 268 + ++L++DD+ Sbjct: 215 QFAKETEVLMLDDI 228 >gi|229825980|ref|ZP_04452049.1| hypothetical protein GCWU000182_01344 [Abiotrophia defectiva ATCC 49176] gi|229789722|gb|EEP25836.1| hypothetical protein GCWU000182_01344 [Abiotrophia defectiva ATCC 49176] Length = 328 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 43/136 (31%), Positives = 64/136 (47%), Gaps = 22/136 (16%) Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-------EYFMWRFASAIRDNCALNL 253 I+ VG+GKT L +ANA IK VV+LTA E + +R A +N ++ Sbjct: 190 IYGGVGVGKTFLASCLANALIK--DGRSVVFLTAFRFFDIFEKYTFRRDEA-DENTSIPS 246 Query: 254 KDSLRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE- 306 + L + DLL+IDD+ F KL LN + K V + + P+ ++ Sbjct: 247 TEPLFDCDLLVIDDIGTEVSNSFTTSKLFD-----CLNERILRNKATVISTNLSPALIKA 301 Query: 307 SLDPRIRSRLQGGVSV 322 + RI SRL G S+ Sbjct: 302 TYSDRIFSRLVGSYSL 317 >gi|300767158|ref|ZP_07077070.1| primosomal protein DnaI [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300494977|gb|EFK30133.1| primosomal protein DnaI [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 311 Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ S G+GKT+LL +ANA + N +++ + F +I +N + + D+++ Sbjct: 160 LYLYGSFGVGKTYLLGGMANALAAKGFNTTLIHFPS--FAVEMKRSISNNTSADKVDAIK 217 Query: 259 NIDLLLIDDM 268 +L+IDD+ Sbjct: 218 RAPILMIDDI 227 >gi|291542838|emb|CBL15948.1| DNA replication protein [Ruminococcus bromii L2-63] Length = 328 Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 11/126 (8%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR----FASAIRDNCALNLK 254 + + + GLGKTHL AIAN +IKR V+Y +A + + + S D+ Sbjct: 191 ILMKGATGLGKTHLSLAIANEAIKR--GYGVIYASAPQLVSKLEKIYFSNKEDDSTF--- 245 Query: 255 DSLRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPRI 312 D L DLL+IDD+ + + ++ NS + S K V+ + +L E+ R Sbjct: 246 DMLVECDLLIIDDLGTEFHSQFSVSQLYNIFNSRMLSNKPVIINTNLTIRDLQENYTDRF 305 Query: 313 RSRLQG 318 SR+ G Sbjct: 306 VSRICG 311 >gi|289422534|ref|ZP_06424377.1| DNA replication protein DnaC [Peptostreptococcus anaerobius 653-L] gi|289157106|gb|EFD05728.1| DNA replication protein DnaC [Peptostreptococcus anaerobius 653-L] Length = 328 Score = 40.8 bits (94), Expect = 0.51, Method: Compositional matrix adjust. Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 18/178 (10%) Query: 161 RFVFSTFIEGSSNRVALTAAQSI----AEVDSHGY-----TTVRLNPLFIHASVGLGKTH 211 +F FS F + L+ +++ +++D + Y T + L + GLGKT+ Sbjct: 142 KFNFSVFSDQEFENYELSPRENMKNIMSDIDEYLYYFKENKTCGKDNLLFTGTPGLGKTY 201 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFM-----WRFASAIRDNCALNLKDSLRNIDLLLID 266 L IA +K V+Y TA M +RF A +++ DLL+ID Sbjct: 202 LCSCIAREILKEGHT--VIYQTAFNLMDIIEKYRFKRADYSRSDQENYNNVYETDLLIID 259 Query: 267 DMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPRIRSRLQGGVSV 322 D+ + E ++LNS ++S K+ + + + L + RI SR+ G + Sbjct: 260 DLGTEMVNSFTISELFNILNSRINSKKKTIISTNLDVGMLYQVYTDRITSRIVGNFKI 317 >gi|229846871|ref|ZP_04466978.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1] gi|229810360|gb|EEP46079.1| DNA replication initiation factor [Haemophilus influenzae 7P49H1] Length = 231 Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I G GKTHLL+A +N + +Q V L+ + F++A+ +N L Sbjct: 44 FYIWGDKGSGKTHLLRAFSNEYLIKQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|312135732|ref|YP_004003070.1| aaa atpase [Caldicellulosiruptor owensensis OL] gi|311775783|gb|ADQ05270.1| AAA ATPase [Caldicellulosiruptor owensensis OL] Length = 342 Score = 40.8 bits (94), Expect = 0.53, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 16/112 (14%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW----RFASAIR--DNCALN 252 L + GLGKT L IA I + V++L + F +++ IR D + Sbjct: 191 LLFYGPTGLGKTFLAHCIAKEIIDKGKT--VIFLDSISFFEILKDKYSKMIRLYDEVSDE 248 Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQHEFCH-LLNSLLD----SAKQVVAAAD 299 SL +DLL+IDD+ +GK EFCH + SLLD S K++V + Sbjct: 249 EYKSLEEVDLLIIDDLG-NEGK--NTEFCHGVFQSLLDKRFLSGKKMVITTN 297 >gi|77164694|ref|YP_343219.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani ATCC 19707] gi|254434656|ref|ZP_05048164.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] gi|76883008|gb|ABA57689.1| regulatory inactivation of DnaA Hda protein [Nitrosococcus oceani ATCC 19707] gi|207090989|gb|EDZ68260.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] Length = 232 Score = 40.8 bits (94), Expect = 0.54, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 19/186 (10%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F + ++NR ++ A + + + +R G+GKTHLL +A I Sbjct: 18 FENYYLAAANRESVAAVERCGQGKGDRFLCLR-------GPSGVGKTHLL--LAACQIAA 68 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 Q RV Y+ + + A + L + IDD+ + G + + H Sbjct: 69 QKGERVAYVPLKRAV---------IMAPEILGGLEVAAFVAIDDIDHIAGYRHWEESLLH 119 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 L N L + +++ A+ PS L L P +RSRL G+ L D + + L+ + A Sbjct: 120 LYNLLQEGRGRLLLASTDKPSTLHWLLPDLRSRLGWGLGYQLQPLDDHQKHAALQFQAAK 179 Query: 343 SQKEDP 348 E P Sbjct: 180 RGLELP 185 >gi|261868685|ref|YP_003256607.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D11S-1] gi|293391763|ref|ZP_06636097.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D7S-1] gi|261414017|gb|ACX83388.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D11S-1] gi|290952297|gb|EFE02416.1| DnaA regulatory inactivator Hda [Aggregatibacter actinomycetemcomitans D7S-1] Length = 234 Score = 40.8 bits (94), Expect = 0.57, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 15/142 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQ-PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 +I + G GK+HLL+AI + + +Q P L V A+Y F+ A+ +N L Sbjct: 47 FYIWGNRGSGKSHLLKAICHHYLTQQRPALYVPLNKAQY----FSPAVLEN--------L 94 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSR 315 D++ +DD+Q + G + L+N + ++ K ++ AD+ P+ L + P + SR Sbjct: 95 ERQDVVCLDDVQEVIGNAEWELAIFDLINRIRETGKTLLLMGADQSPANLAARLPDLHSR 154 Query: 316 LQGGVSVPLGLHDYEMRFSILK 337 L G L D + ++L+ Sbjct: 155 LTWGEVYQLMPLDDAQKIAVLQ 176 >gi|269926921|ref|YP_003323544.1| IstB domain protein ATP-binding protein [Thermobaculum terrenum ATCC BAA-798] gi|269790581|gb|ACZ42722.1| IstB domain protein ATP-binding protein [Thermobaculum terrenum ATCC BAA-798] Length = 280 Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 69/157 (43%), Gaps = 32/157 (20%) Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK-RQPN--LR 228 S A A + AE + HG+ + + G GKTHL AI N SI RQ N Sbjct: 107 SAATAFEATKQYAE-NPHGW-------IMLCGPCGSGKTHLAAAIVNYSISVRQSNSLFM 158 Query: 229 VVYLTAEYFMWRF---ASAIRDNCALNLKDSLRNIDLLLIDDM------QFLQGKLIQHE 279 +V +Y F + D L +R + LL++DD+ + + KL Q Sbjct: 159 IVPDLLDYLRETFNPKSDITYDERFL----MIREVPLLVLDDLGTENATSWAREKLYQ-- 212 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 L+N +S V ++PP E++D RIRSRL Sbjct: 213 ---LINHRYNSEMPTVITTNQPP---EAIDDRIRSRL 243 >gi|28209894|ref|NP_780838.1| DNA replication protein DnaC [Clostridium tetani E88] gi|28202329|gb|AAO34775.1| DNA replication protein dnaC [Clostridium tetani E88] Length = 329 Score = 40.8 bits (94), Expect = 0.59, Method: Compositional matrix adjust. Identities = 42/126 (33%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L + G GK+ L IA I VVY TA + IR N NL++ L Sbjct: 187 LLFFGNSGTGKSFLAHCIAKELI--DNGYMVVYKTAVELINELRE-IRFNPNQNLENILI 243 Query: 259 NIDLLLIDDMQFLQ-GKLIQHEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 N DLL+IDD+ + + EF +LLN LL K +V+ L++ RI SRL Sbjct: 244 NCDLLIIDDLGTEPLTEFSKVEFFNLLNRKLLKRKKMIVSTNFSIEGLLKTYSERISSRL 303 Query: 317 QGGVSV 322 G ++ Sbjct: 304 LGNFTL 309 >gi|309784767|ref|ZP_07679400.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617] gi|308927137|gb|EFP72611.1| dnaA regulatory inactivator Hda [Shigella dysenteriae 1617] Length = 197 Score = 40.4 bits (93), Expect = 0.61, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +++ A G G++HLL A A A + ++ + V Y+ + W + D + Sbjct: 10 IYLWAREGAGRSHLLHA-ACAELSQRGD-AVGYVPLDKRTWFVPEVL---------DGME 58 Query: 259 NIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRL 316 ++ L+ ID+++ + G +L + L N +L+S K +++ DRPP +L P + SRL Sbjct: 59 HLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRL 118 Query: 317 QGG 319 G Sbjct: 119 DWG 121 >gi|225166507|ref|ZP_03728143.1| chromosomal replication initiator protein DnaA [Opitutaceae bacterium TAV2] gi|224799254|gb|EEG17845.1| chromosomal replication initiator protein DnaA [Opitutaceae bacterium TAV2] Length = 105 Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 30/59 (50%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S++ +V S K DVY WF+ + + + L VP +F WI + YL+ IT+ Sbjct: 9 SLWELVKSDFKTLFPEDVYQLWFEPIVCLETTEDSLVLGVPNDFAAIWISDNYLDLITQ 67 >gi|94970404|ref|YP_592452.1| chromosomal replication initiator, DnaA-like [Candidatus Koribacter versatilis Ellin345] gi|94552454|gb|ABF42378.1| Chromosomal replication initiator, DnaA-like protein [Candidatus Koribacter versatilis Ellin345] Length = 276 Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 1/80 (1%) Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VAK + + + R+ + RQV L+ +TP S EI R+ D HTT+ + VR Sbjct: 83 VAKEFEVPLEYFSTPRKFSRMALVRQVMWLLASHLTPYSLSEIARK-SDVHHTTLCYGVR 141 Query: 478 KVEKMLETDITLKKEVELLK 497 ++++ L TD L + V +K Sbjct: 142 RIKERLVTDPQLARTVRTIK 161 >gi|291334438|gb|ADD94093.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1035] gi|291334491|gb|ADD94145.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1161] gi|291334564|gb|ADD94215.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C1227] gi|291334686|gb|ADD94332.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C890] gi|291336588|gb|ADD96136.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C777] Length = 96 Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust. Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 V + Y +S++D+ S R R VVR R + L S + R F ++DHTT++H++R Sbjct: 11 VCEKYTVSKHDIFSKGRTRDVVRARSIIYNLLYEGYNVSLSSMARLF-NQDHTTIIHSLR 69 >gi|156839538|ref|XP_001643459.1| hypothetical protein Kpol_483p20 [Vanderwaltozyma polyspora DSM 70294] gi|156114070|gb|EDO15601.1| hypothetical protein Kpol_483p20 [Vanderwaltozyma polyspora DSM 70294] Length = 783 Score = 40.4 bits (93), Expect = 0.65, Method: Compositional matrix adjust. Identities = 47/185 (25%), Positives = 85/185 (45%), Gaps = 23/185 (12%) Query: 191 YTTVRLNP---LFIHASVGLGKTHLLQAIANAS-----IKRQPNLRVVYLTAEYFMWR-- 240 ++ +NP + +H G GKT LL+ +AN+S P++ YL R Sbjct: 272 FSDFGINPPRGVLLHGPPGTGKTMLLRCVANSSNAHVLTINGPSIVSKYLGETEAKLREI 331 Query: 241 FASAIRDNCALNLKDSLRNIDLLLI----DDMQFLQGKLIQHEFCHLLNSLLDSAKQVVA 296 F A + ++ D ID L DD ++ +++ L++ + S + VV Sbjct: 332 FDEAQKYQPSIIFIDE---IDSLAPNRANDDSGEVESRVVAT-LLTLMDGMGGSGRLVVV 387 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 AA P+ S+DP +R + V +G+ D + RF ILK + S+ + + +NE+ Sbjct: 388 AATNRPN---SVDPALRRPGRFDQEVEIGIPDVDARFDILKKQF--SRMSEERHTLNEDD 442 Query: 357 LMHVA 361 + ++A Sbjct: 443 IKNIA 447 >gi|325846105|ref|ZP_08169199.1| putative DNA replication protein DnaC [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481698|gb|EGC84733.1| putative DNA replication protein DnaC [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 319 Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust. Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 19/136 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA-------EYFMWRFASAIRDNCAL 251 L+I VG GKT L+ +IA + R N V+YLTA +++ F+ +D Sbjct: 179 LYIFGEVGRGKTFLINSIAKEILDR--NYSVLYLTATKLFSFMNDYLYAFSEKKQD---- 232 Query: 252 NLKDSLRNI---DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE-LE 306 L++S I DLL+IDD+ + + ++N + + K ++ +++ E +E Sbjct: 233 -LQESYDLIFDSDLLIIDDLGSENDRNSNEANLFEIVNDRIINKKPIIFSSNYSEDEIME 291 Query: 307 SLDPRIRSRLQGGVSV 322 PRI SR+ G V Sbjct: 292 VYGPRIFSRIIGSSHV 307 >gi|253681332|ref|ZP_04862130.1| DNA replication protein DnaC [Clostridium botulinum D str. 1873] gi|253562570|gb|EES92021.1| DNA replication protein DnaC [Clostridium botulinum D str. 1873] Length = 330 Score = 40.4 bits (93), Expect = 0.66, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 5/126 (3%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L + + G GKT L IA + R V+Y TAE + N L++ L Sbjct: 186 LLFYGNSGTGKTFLTHCIAKELLDRGH--LVIYRTAEDLIKNLRETKLQN-NYELEELLI 242 Query: 259 NIDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPRIRSRL 316 N DLL+IDD+ Q + E +LLN + K++V + + L ++ RI SRL Sbjct: 243 NCDLLIIDDLGTEQISNFTKTELFNLLNKRILKNKKMVISTNYTLELLSQTYSERITSRL 302 Query: 317 QGGVSV 322 G ++ Sbjct: 303 FGNFTL 308 >gi|225550542|ref|ZP_03771491.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379696|gb|EEH02058.1| conserved hypothetical protein [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 321 Score = 40.4 bits (93), Expect = 0.68, Method: Compositional matrix adjust. Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 14/103 (13%) Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT------- 233 QS + D+ +L FI+ G+GK+ + QA N +I + NL++ Y+T Sbjct: 145 QSANKEDNITTNDQQLKSAFIYGDFGVGKSIITQAYTN-TISLKYNLKIAYITLNELFKN 203 Query: 234 -AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 ++F ++ I D+ L + L N+D+L+IDD F G L Sbjct: 204 VIQFFNYK---DISDSVVNELINELSNLDVLVIDD--FSSGNL 241 >gi|301169967|emb|CBW29571.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus influenzae 10810] Length = 231 Score = 40.4 bits (93), Expect = 0.69, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I + G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|168181077|ref|ZP_02615741.1| putative DNA replication protein DnaC [Clostridium botulinum NCTC 2916] gi|182668136|gb|EDT80115.1| putative DNA replication protein DnaC [Clostridium botulinum NCTC 2916] Length = 325 Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 14/132 (10%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N +FI + G GKT L IA + R VVY TA+ + S I+ N +L+D Sbjct: 185 NFMFI-GNPGTGKTFLSNCIAKELLDRGN--FVVYRTADELIQNLRS-IKFNNDKHLEDI 240 Query: 257 LRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + N DLL+IDD+ +F + +L F + LL K ++++ S L++ Sbjct: 241 IINCDLLIIDDLGTESINEFSKVEL----FNFINKKLLMRKKMIISSNYSIESILKNYSE 296 Query: 311 RIRSRLQGGVSV 322 RI SRL G ++ Sbjct: 297 RISSRLLGNFTL 308 >gi|9635698|ref|NP_061611.1| hypothetical protein phiPV83p21 [Staphylococcus prophage phiPV83] gi|8918768|dbj|BAA97828.1| unnamed protein product [Staphylococcus prophage phiPV83] Length = 257 Score = 40.4 bits (93), Expect = 0.71, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 94 NEKQVQAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 150 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 + M R +A N + +R +IDLL++DDM Sbjct: 151 HIQMLMDRIKAAYNKNAVETTDELVRLLSDIDLLVLDDM 189 >gi|156743910|ref|YP_001434039.1| IstB ATP binding domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156235238|gb|ABU60021.1| IstB domain protein ATP-binding protein [Roseiflexus castenholzii DSM 13941] Length = 263 Score = 40.4 bits (93), Expect = 0.72, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 19/127 (14%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---D 255 L + + G GKTHL AIAN I Q + RV++ + S + + + Sbjct: 111 LILFGNYGCGKTHLAAAIANQLI--QNHYRVLFAVVPDLLDHLRSTFGPSSEIEYDQRFE 168 Query: 256 SLRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 +R D+L++DD+ + + KL Q ++N + A V ++R P E +D Sbjct: 169 DIREADVLILDDLGTENTTSWAREKLFQ-----IINHRYNFALPTVITSNRKP---EEID 220 Query: 310 PRIRSRL 316 PRI SR+ Sbjct: 221 PRIFSRM 227 >gi|309792400|ref|ZP_07686867.1| IstB domain protein ATP-binding protein [Oscillochloris trichoides DG6] gi|308225555|gb|EFO79316.1| IstB domain protein ATP-binding protein [Oscillochloris trichoides DG6] Length = 234 Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust. Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 14/159 (8%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---D 255 L ++ G GKTHL AIAN +K N V++ + S + + D Sbjct: 74 LILYGGYGCGKTHLAAAIANEVLKM--NTEVLFTVVPDLLDHLRSTFGPHSEVAYDERFD 131 Query: 256 SLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 +R LL++DD+ + + ++N + A V ++R P + +DPRI S Sbjct: 132 QVRGAKLLILDDLGTENATPWAREKLYQIINHRYNYALPTVITSNREPKD---IDPRILS 188 Query: 315 RLQGGVSVP----LGLHDYEMRFSILKNRLAISQKEDPK 349 R++ P L DY R S+ + A ++ +P+ Sbjct: 189 RMEDVALCPERIMLDAGDYR-RLSVDQRFGARKRRPEPR 226 >gi|301154665|emb|CBW14127.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus parainfluenzae T3T1] Length = 231 Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 74/148 (50%), Gaps = 13/148 (8%) Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 T ++ ++ + +GKTHLL+A+ + I++Q + V L+ + F++A+ +N Sbjct: 37 TDLQQQFFYLWGNQSVGKTHLLRALCHKYIQQQRSAIYVPLSKSQY---FSTAVFEN--- 90 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLD 309 L +L+ +DD+Q + G + L N + + K +V +A++ P+ L Sbjct: 91 -----LEQQELVCLDDLQAVIGNSEWEIALFDLFNCIKANGKTLLVVSAEQSPTALPVKL 145 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILK 337 P + SRL+ G S L E + ++LK Sbjct: 146 PDLASRLKWGESYQLIPLSDEQKLAVLK 173 >gi|163759049|ref|ZP_02166135.1| hypothetical protein HPDFL43_04775 [Hoeflea phototrophica DFL-43] gi|162283453|gb|EDQ33738.1| hypothetical protein HPDFL43_04775 [Hoeflea phototrophica DFL-43] Length = 213 Score = 40.4 bits (93), Expect = 0.75, Method: Compositional matrix adjust. Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 4/95 (4%) Query: 409 MRIEDIQRMVAKHYNISRNDLLSN--RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 +R + R+V + ++ + L+N R R RQ+AMYLS ++ + I R FG Sbjct: 108 LRCRVVLRLVTELFDAALERELANGVARRRPRCHMRQIAMYLSHVVLSVPYRTIARAFG- 166 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RD TTV+HA VE + D + VE +R ++ Sbjct: 167 RDRTTVVHACAVVEDRRD-DPGYDRFVERCERCVN 200 >gi|229552553|ref|ZP_04441278.1| primosomal protein DnaI [Lactobacillus rhamnosus LMS2-1] gi|258508751|ref|YP_003171502.1| primosomal protein DnaI [Lactobacillus rhamnosus GG] gi|229314105|gb|EEN80078.1| primosomal protein DnaI [Lactobacillus rhamnosus LMS2-1] gi|257148678|emb|CAR87651.1| Primosomal protein DnaI [Lactobacillus rhamnosus GG] gi|259650057|dbj|BAI42219.1| primosomal protein DnaI [Lactobacillus rhamnosus GG] Length = 311 Score = 40.4 bits (93), Expect = 0.76, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 17/123 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT+LL AIAN + + + + F+ +AI +N L DS++ Sbjct: 160 LYLSGPFGVGKTYLLGAIAN-DLASKGGIATTLIHVPTFVVEMKNAIGNNSVLKKIDSVK 218 Query: 259 NIDLLLIDDMQF----------LQGKLIQHEFCHLLNSLLDSAKQV------VAAADRPP 302 +L++DD+ + G ++Q+ + +L S K + +A DR Sbjct: 219 RAPILMLDDIGAESISPWVRDDVLGIILQYRMQEKMPTLFSSNKSMAELTESLAGTDRGN 278 Query: 303 SEL 305 SE+ Sbjct: 279 SEM 281 >gi|227890559|ref|ZP_04008364.1| primosomal protein DnaI [Lactobacillus salivarius ATCC 11741] gi|227867497|gb|EEJ74918.1| primosomal protein DnaI [Lactobacillus salivarius ATCC 11741] Length = 312 Score = 40.4 bits (93), Expect = 0.78, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ S G+GKT+LL AIAN ++ + +V++ + F ++I N + D+L+ Sbjct: 164 LYLSGSFGVGKTYLLGAIANKLAEKGIKVTLVHMPS--FAVEIKNSIGKNTTMEKVDALK 221 Query: 259 NIDLLLIDDM 268 +L++DD+ Sbjct: 222 KAPVLMMDDI 231 >gi|90961469|ref|YP_535385.1| primosomal protein DnaI [Lactobacillus salivarius UCC118] gi|90820663|gb|ABD99302.1| Primosomal protein [Lactobacillus salivarius UCC118] Length = 309 Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ S G+GKT+LL AIAN ++ + +V++ + F ++I N + D+L+ Sbjct: 161 LYLSGSFGVGKTYLLGAIANKLAEKGIKVTLVHMPS--FAVEIKNSIGKNTTMEKVDALK 218 Query: 259 NIDLLLIDDM 268 +L++DD+ Sbjct: 219 KAPVLMMDDI 228 >gi|323706151|ref|ZP_08117719.1| AAA ATPase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534444|gb|EGB24227.1| AAA ATPase [Thermoanaerobacterium xylanolyticum LX-11] Length = 326 Score = 40.0 bits (92), Expect = 0.81, Method: Compositional matrix adjust. Identities = 45/150 (30%), Positives = 72/150 (48%), Gaps = 11/150 (7%) Query: 181 QSIAEV--DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 +SI EV D Y V LF + GLGKT L +A + + V+Y TA + Sbjct: 164 KSIVEVAKDFIDYFDVEKESLFFYGDSGLGKTFLSHCVAKELLDKGK--VVLYRTAPDLV 221 Query: 239 --WRFASAIRDNCAL-NLKDSLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQ 293 R DN + D LR DLL+IDD+ + + +Q F ++N+ L + K+ Sbjct: 222 EGLRLNKLNSDNDSYYEYTDLLRECDLLIIDDLGTEPITPFSLQEIF-SIVNARLLANKK 280 Query: 294 VVAAADRPPSELESLDP-RIRSRLQGGVSV 322 + + + P SE+ ++ P R+ SR+ G + Sbjct: 281 FIISTNLPLSEVMNIYPERLCSRILGNFKL 310 >gi|68250242|ref|YP_249354.1| DNA replication initiation factor [Haemophilus influenzae 86-028NP] gi|68058441|gb|AAX88694.1| predicted ATPase involved in DNA replication initiation [Haemophilus influenzae 86-028NP] Length = 231 Score = 40.0 bits (92), Expect = 0.84, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|326567507|gb|EGE17622.1| DnaA family protein [Moraxella catarrhalis BC1] Length = 254 Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 L LFI G GKTHL AI + + E +D A L Sbjct: 42 LRELFIVGDSGFGKTHLASAIYEHYTSMTSKMVISLNLTELIE-------QDPHATALV- 93 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELES--LDPRI 312 L DL+++DD+Q ++ Q HL+N L + KQ++ AD P EL+ LD Sbjct: 94 GLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDLHT 153 Query: 313 RSRLQGGVSVP 323 R L +++P Sbjct: 154 RLSLAPMLTLP 164 >gi|326563702|gb|EGE13953.1| DnaA family protein [Moraxella catarrhalis 46P47B1] gi|326564422|gb|EGE14650.1| DnaA family protein [Moraxella catarrhalis 12P80B1] gi|326577487|gb|EGE27367.1| DnaA family protein [Moraxella catarrhalis O35E] Length = 254 Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 L LFI G GKTHL AI + + E +D A L Sbjct: 42 LRELFIVGDSGFGKTHLASAIYEHYTSMTSKMVISLNLTELIE-------QDPHATALV- 93 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELES--LDPRI 312 L DL+++DD+Q ++ Q HL+N L + KQ++ AD P EL+ LD Sbjct: 94 GLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDLHT 153 Query: 313 RSRLQGGVSVP 323 R L +++P Sbjct: 154 RLSLAPMLTLP 164 >gi|148825820|ref|YP_001290573.1| DNA replication initiation factor [Haemophilus influenzae PittEE] gi|148715980|gb|ABQ98190.1| hypothetical protein CGSHiEE_03865 [Haemophilus influenzae PittEE] Length = 231 Score = 40.0 bits (92), Expect = 0.87, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNQIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|229845047|ref|ZP_04465183.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1] gi|229812019|gb|EEP47712.1| DNA replication initiation factor [Haemophilus influenzae 6P18H1] Length = 231 Score = 40.0 bits (92), Expect = 0.88, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|212695602|ref|ZP_03303730.1| hypothetical protein ANHYDRO_00119 [Anaerococcus hydrogenalis DSM 7454] gi|212677480|gb|EEB37087.1| hypothetical protein ANHYDRO_00119 [Anaerococcus hydrogenalis DSM 7454] Length = 275 Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust. Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 15/121 (12%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SPL ++ F ++ +G + +VA A+S ++ D+ G L + VG G Sbjct: 73 CFSSPLQHQYNFEKYLNEKGQAYKVAYNYAKSFEQMKKDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASIKR-QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 KT+L +IAN I+R Q ++++ L+ + ++ D + + +L NI LL++DD Sbjct: 125 KTYLACSIANELIERKQVKVKIMNLSQVINQIQKSAFKLD--SNEIISNLSNIPLLILDD 182 Query: 268 M 268 + Sbjct: 183 L 183 >gi|260582654|ref|ZP_05850443.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127] gi|260094326|gb|EEW78225.1| DnaA regulatory inactivator Hda [Haemophilus influenzae NT127] Length = 231 Score = 40.0 bits (92), Expect = 0.89, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I + G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|221135254|ref|ZP_03561557.1| hypothetical protein GHTCC_10030 [Glaciecola sp. HTCC2999] Length = 40 Score = 40.0 bits (92), Expect = 0.89, Method: Composition-based stats. Identities = 16/33 (48%), Positives = 21/33 (63%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 L PLFI+ GLGKTHLL A+ N + +P + Sbjct: 2 LYPLFIYGGTGLGKTHLLHAVGNGIVASKPGCK 34 >gi|319776111|ref|YP_004138599.1| ATPase involved in DNA replication initiation [Haemophilus influenzae F3047] gi|317450702|emb|CBY86922.1| predicted ATPase involved in DNA replication initiation [Haemophilus influenzae F3047] Length = 231 Score = 40.0 bits (92), Expect = 0.90, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I + G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQNVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|326561047|gb|EGE11412.1| DnaA family protein [Moraxella catarrhalis 7169] gi|326566731|gb|EGE16870.1| DnaA family protein [Moraxella catarrhalis 103P14B1] gi|326569353|gb|EGE19413.1| DnaA family protein [Moraxella catarrhalis BC8] gi|326571448|gb|EGE21463.1| DnaA family protein [Moraxella catarrhalis BC7] gi|326575269|gb|EGE25197.1| DnaA family protein [Moraxella catarrhalis CO72] gi|326576644|gb|EGE26551.1| DnaA family protein [Moraxella catarrhalis 101P30B1] Length = 254 Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 L LFI G GKTHL AI + + E +D A L Sbjct: 42 LRELFIVGDSGFGKTHLASAIYEHYTSMTSKMVISLNLTELIE-------QDPHATALV- 93 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELES--LDPRI 312 L DL+++DD+Q ++ Q HL+N L + KQ++ AD P EL+ LD Sbjct: 94 GLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDLHT 153 Query: 313 RSRLQGGVSVP 323 R L +++P Sbjct: 154 RLSLAPMLTLP 164 >gi|167621634|ref|YP_001672142.1| hypothetical protein Caul_5364 [Caulobacter sp. K31] gi|167351757|gb|ABZ74483.1| hypothetical protein Caul_5364 [Caulobacter sp. K31] Length = 468 Score = 40.0 bits (92), Expect = 0.92, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 29/58 (50%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E + +++ L+ + + SWF R+ FH + ++ LS PT IK Y+E I Sbjct: 390 EVPWPEINAELRRLIREGAHGSWFNRVGFHGIDDGLISLSTPTGIAAERIKRDYVEAI 447 >gi|332983111|ref|YP_004464552.1| IstB domain-containing protein ATP-binding protein [Mahella australiensis 50-1 BON] gi|332700789|gb|AEE97730.1| IstB domain protein ATP-binding protein [Mahella australiensis 50-1 BON] Length = 327 Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 10/131 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-----WRFASAIRDNCALNL 253 L + GLGKT L IA + R V+Y TA ++F+ D Sbjct: 187 LLFYGPTGLGKTFLSSCIARELLDRGKT--VLYQTAFSIFEILREYKFSLNKSDYIPQQF 244 Query: 254 KDSLRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPR 311 D L ++DLL+IDD+ L I E ++LNS L + K+ + + + S+L ++ R Sbjct: 245 -DMLLDVDLLIIDDLGTELNNSFISSELFNVLNSRLLAGKKTIISTNLTLSQLNDAYSER 303 Query: 312 IRSRLQGGVSV 322 I SR+ G ++ Sbjct: 304 IISRIIGHYTI 314 >gi|153952751|ref|YP_001393516.1| DNA replication protein DnaC [Clostridium kluyveri DSM 555] gi|219853417|ref|YP_002470539.1| hypothetical protein CKR_0074 [Clostridium kluyveri NBRC 12016] gi|146345632|gb|EDK32168.1| DnaC-related protein [Clostridium kluyveri DSM 555] gi|219567141|dbj|BAH05125.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 328 Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 71/151 (47%), Gaps = 11/151 (7%) Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A T+ + I +++ + N LF + + G GKT L IA + R VVY T Sbjct: 167 KIASTSWKYI-----ENFSSSKENLLF-YGNPGTGKTFLSNCIAKELLDR--GFLVVYRT 218 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ-GKLIQHEFCHLLN-SLLDSA 291 +E + S IR L+D + N DLL+IDD+ Q + E +L+N LL Sbjct: 219 SEALIQDLKS-IRFKENNKLEDLIINCDLLIIDDLGSEQITDFSKTELFNLINRKLLKQN 277 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 K +++ L+ RI SRL G ++ Sbjct: 278 KMLISTNCDLEELLKYYSERISSRLLGEFTL 308 >gi|213420310|ref|ZP_03353376.1| DNA replication initiation factor [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 176 Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust. Identities = 33/123 (26%), Positives = 62/123 (50%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +++ A G G++HLL A A A + ++ + V Y+ + W + D + Sbjct: 10 IYLWAREGAGRSHLLHA-ACAELSQRGD-AVGYVPLDKRTWFVPEVL---------DGME 58 Query: 259 NIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRL 316 ++ L+ ID+++ + G +L + L N +L+S K +++ DRPP +L P + SRL Sbjct: 59 HLSLVCIDNIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRL 118 Query: 317 QGG 319 G Sbjct: 119 DWG 121 >gi|323490460|ref|ZP_08095667.1| primosomal protein DnaI [Planococcus donghaensis MPA1U2] gi|323395864|gb|EGA88703.1| primosomal protein DnaI [Planococcus donghaensis MPA1U2] Length = 311 Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%) Query: 199 LFIHASVGLGKTHLLQAIAN--ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 L+++ G+GK++LL A+AN A I N++ V + FM AI D D Sbjct: 165 LYLYGQFGIGKSYLLSAVANELAEI----NVKSVLVFVPEFMREMKQAIGDQTLQEKVDY 220 Query: 257 LRNIDLLLIDDM 268 ++ D+L++DD+ Sbjct: 221 VKKADVLMLDDI 232 >gi|156932962|ref|YP_001436878.1| DNA replication initiation factor [Cronobacter sakazakii ATCC BAA-894] gi|269969358|sp|A7ML17|HDA_ENTS8 RecName: Full=DnaA-homolog protein hda gi|156531216|gb|ABU76042.1| hypothetical protein ESA_00765 [Cronobacter sakazakii ATCC BAA-894] Length = 225 Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust. Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 21/159 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F++F G N L A Q++ D GY ++ + G G++HLL A A A + Sbjct: 10 TFASFWPGD-NPSLLAALQTMLRHDRSGY-------IYFWSREGGGRSHLLHA-ACAELS 60 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 ++ + V Y+ + W + + + + L+ ID+++ + G + + Sbjct: 61 QRGD-AVGYVPLDKRTWFVPEVL---------EGMEQLSLVCIDNIECIAGDEPWEMAIF 110 Query: 282 HLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 +L N +L+S +++ DRPP +L P + SRL G Sbjct: 111 NLYNRILESGNTRLLITGDRPPRQLNLKLPDLASRLDWG 149 >gi|296112801|ref|YP_003626739.1| DnaA family protein [Moraxella catarrhalis RH4] gi|295920495|gb|ADG60846.1| DnaA family protein [Moraxella catarrhalis RH4] Length = 254 Score = 40.0 bits (92), Expect = 0.97, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 56/131 (42%), Gaps = 11/131 (8%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 L LFI G GKTHL AI + + E +D A L Sbjct: 42 LRELFIVGDSGFGKTHLASAIYEHYTSMTSKMVISLNLTELIE-------QDPHATALV- 93 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELES--LDPRI 312 L DL+++DD+Q ++ Q HL+N L + KQ++ AD P EL+ LD Sbjct: 94 GLEMFDLIIVDDLQMVRHSYEWQEGLFHLINRLREHQKQILYLADDPARELQIGLLDLHT 153 Query: 313 RSRLQGGVSVP 323 R L +++P Sbjct: 154 RLSLAPMLTLP 164 >gi|291320651|ref|YP_003515916.1| putative DNA helicase [Mycoplasma agalactiae] gi|290752987|emb|CBH40963.1| Putative DNA helicase [Mycoplasma agalactiae] Length = 299 Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 4/86 (4%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSL 257 ++I+ S G GKT++ A+ N+ R + Y+ + ++ +LN +K SL Sbjct: 153 IYIYGSNGTGKTYIANAMVNSFASR--GISSAYIKLNDLFNYLKKKMSNSISLNEIKSSL 210 Query: 258 RNIDLLLIDDMQFLQ-GKLIQHEFCH 282 +N+ LL+IDD+ F + + +++F + Sbjct: 211 KNVSLLVIDDLGFEKHNEWFKYDFVY 236 >gi|110802282|ref|YP_699870.1| DNA replication protein DnaC [Clostridium perfringens SM101] gi|110682783|gb|ABG86153.1| putative DNA replication protein DnaC [Clostridium perfringens SM101] Length = 331 Score = 40.0 bits (92), Expect = 0.99, Method: Compositional matrix adjust. Identities = 52/163 (31%), Positives = 70/163 (42%), Gaps = 10/163 (6%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGY----TTVRLNPLFIHASVGLGKTHLLQAIAN 218 VFS G+ Q I + +GY T N LF + S G GKT L IA Sbjct: 146 VFSPLNNGNEKYSPRENMQIIIDKMVNGYIPKFDTHNENILF-YGSPGTGKTFLTYCIAK 204 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ-GKLIQ 277 + VVY T++ + R IR N L+D L N DLL+IDD+ Q Sbjct: 205 ELLDN--GFLVVYRTSDELI-RNLREIRFNNDHELEDLLINCDLLVIDDLGAEQITDFST 261 Query: 278 HEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 E LLN +L + K +++ P ++ RI SRL G Sbjct: 262 TELFTLLNKKILLNKKMIISTNLNLPELKQAYAERITSRLLGN 304 >gi|332995872|gb|AEF05927.1| flavodoxin [Alteromonas sp. SN2] Length = 273 Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust. Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 26/222 (11%) Query: 147 KQTISPVFG-SPLDSRFVFSTFIEGSSNRV-ALTAAQS-IAEVDSHGYTTVRLNPLFIHA 203 K + + G S L+ ++ F+ IE S + + A++ AQS IA D + + + + Sbjct: 52 KARVEAIHGRSDLNPKWTFANLIEDSDDVIEAVSIAQSFIAAHDDPAWRQSGSHMMLFYG 111 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVY------LTAEYFMWRFASAIRDNCALNLKDS- 256 G GK+H+ AIA+ I+ Q + V+Y L Y + F++ DN +++ Sbjct: 112 DYGRGKSHIAGAIAHQLIE-QYEISVLYRQLSTLLEMRYSSYDFSAT--DNIGQKFREAN 168 Query: 257 --LRNIDLLLIDDM---QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 L +DLL++D++ + + K Q +LL L + K + + ELE R Sbjct: 169 QELLEVDLLILDEVCVNETVLKKNTQSWLGNLLRQRLVNKKNCILITNHSLGELEHAMGR 228 Query: 312 IRSRLQGGVSVPLGLHD-YEMRFSILKNRLAISQKEDPKLNI 352 + +D Y++RF R ++Q E NI Sbjct: 229 Y-------CFESVKEYDTYKVRFQGPSRREGLTQDEAEAQNI 263 >gi|226224161|ref|YP_002758268.1| primosome component (helicase loader) DnaI [Listeria monocytogenes Clip81459] gi|225876623|emb|CAS05332.1| primosome component (helicase loader) DnaI [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 307 Score = 40.0 bits (92), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIH S G GK++LL A+A + + +VYL FM +I DN + Sbjct: 161 LFIHGSFGTGKSYLLGALAKELALKGISTTLVYLPE--FMREVKQSISDNTVGEKIQFAK 218 Query: 259 NIDLLLIDDM 268 ++L++DD+ Sbjct: 219 ETEVLMLDDI 228 >gi|148377926|ref|YP_001256802.1| putative DNA helicase [Mycoplasma agalactiae PG2] gi|148291972|emb|CAL59364.1| Putative DNA helicase [Mycoplasma agalactiae PG2] Length = 299 Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 4/86 (4%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-LKDSL 257 ++I+ S G GKT++ A+ N+ R + Y+ + ++ +LN +K SL Sbjct: 153 IYIYGSNGTGKTYIANAMVNSFASR--GISSAYIKLNDLFNYLKKKMSNSISLNEIKSSL 210 Query: 258 RNIDLLLIDDMQFLQ-GKLIQHEFCH 282 +N+ LL+IDD+ F + + +++F + Sbjct: 211 KNVSLLVIDDLGFEKHNEWFKYDFVY 236 >gi|329123275|ref|ZP_08251843.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116] gi|327471484|gb|EGF16932.1| DnaA regulatory inactivator Hda [Haemophilus aegyptius ATCC 11116] Length = 236 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I + G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 49 FYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 97 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 98 QQELVCLDDLQNVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 157 Query: 317 QGG 319 G Sbjct: 158 TWG 160 >gi|262089713|gb|ACY24808.1| DnaA family protein [uncultured organism] Length = 237 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 17/127 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL---NLKD 255 +++ + G G THLLQA + + ++ V YL +RD +L Sbjct: 50 IYLWGAPGCGLTHLLQAACHQA--QEMGSSVQYLP-----------LRDLVGYAPDDLFT 96 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 L +DL+ +D + + G+ + HL N L D+ K ++ AA+ P EL +RS Sbjct: 97 GLEMVDLVCLDCLPTIAGRADWELAIFHLYNRLRDAGKCLLVAAEHSPRELALSLEDLRS 156 Query: 315 RLQGGVS 321 RLQ G++ Sbjct: 157 RLQWGLT 163 >gi|240140428|ref|YP_002964907.1| hypothetical protein MexAM1_META1p3948 [Methylobacterium extorquens AM1] gi|240010404|gb|ACS41630.1| Hypothetical protein MexAM1_META1p3948 [Methylobacterium extorquens AM1] Length = 136 Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%) Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMY-LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 + +S +++ RR R + R A + ++K S +I R FG+RDH+TVL +RK Sbjct: 69 QHGVSYGEVIGPRRSRKITSARFAAYHAVAKARPDYSLSQIARHFGNRDHSTVLRGLRK 127 >gi|327439262|dbj|BAK15627.1| DNA replication protein [Solibacillus silvestris StLB046] Length = 319 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ + G+GKT++L AIANA K + +VY+ F+ S++ + D ++ Sbjct: 173 LYLYGTFGVGKTYILGAIANALSKERIQTLLVYMPE--FIRELKSSVTEGSIEQKIDFVK 230 Query: 259 NIDLLLIDDM 268 + +L++DD+ Sbjct: 231 KVPVLMLDDV 240 >gi|300214321|gb|ADJ78737.1| Primosomal protein [Lactobacillus salivarius CECT 5713] Length = 309 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ S G+GKT+LL AIAN ++ + +V++ + F ++I N + D+L+ Sbjct: 161 LYLSGSFGVGKTYLLGAIANKLAEKGIKVTLVHMPS--FAVEIKNSIGKNTTMEKVDALK 218 Query: 259 NIDLLLIDDM 268 +L++DD+ Sbjct: 219 KSPVLMMDDI 228 >gi|229830140|ref|ZP_04456209.1| hypothetical protein GCWU000342_02247 [Shuttleworthia satelles DSM 14600] gi|229791438|gb|EEP27552.1| hypothetical protein GCWU000342_02247 [Shuttleworthia satelles DSM 14600] Length = 339 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 38/120 (31%), Positives = 58/120 (48%), Gaps = 6/120 (5%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF-ASAIR-DNCALNLKDSLRNIDLL 263 G+GKT L IANA + Q V+Y TA + F AS R D A D++ + DLL Sbjct: 204 GIGKTFLSNCIANALM--QKGHSVIYFTAFQLLKAFEASTFRHDEEAGRESDNIFSCDLL 261 Query: 264 LIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPRIRSRLQGGVS 321 +IDD+ + +F ++N L K V +++ +L ++ R+ SRL S Sbjct: 262 IIDDLGTEMNNSFTNSKFFEVVNERLLRKKSTVISSNLDMGQLRDTYSDRVYSRLASNYS 321 >gi|16273145|ref|NP_439382.1| DNA replication initiation factor [Haemophilus influenzae Rd KW20] gi|260581145|ref|ZP_05848965.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW] gi|6136705|sp|O86235|Y122B_HAEIN RecName: Full=Uncharacterized protein HI_1225.1 gi|3212215|gb|AAC22879.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092173|gb|EEW76116.1| DnaA regulatory inactivator Hda [Haemophilus influenzae RdAW] gi|309972964|gb|ADO96165.1| DNA replication initiation factor Had [Haemophilus influenzae R2846] Length = 231 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|332671374|ref|YP_004454382.1| IstB domain-containing protein ATP-binding protein [Cellulomonas fimi ATCC 484] gi|332340412|gb|AEE46995.1| IstB domain protein ATP-binding protein [Cellulomonas fimi ATCC 484] Length = 262 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 9/96 (9%) Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 A IA + + + R N +F+ G GKTHL IA + Q RV++ TA ++ Sbjct: 92 ARDQIAHLGTLDFVAARDNVVFL-GPPGTGKTHLATGIAVRAC--QAGHRVLFATASEWV 148 Query: 239 WRFASAIRDNCALNLKDSLRNID---LLLIDDMQFL 271 R ASA D L+D LR + LL+ID++ ++ Sbjct: 149 DRLASAHHDG---RLQDELRRLGRYPLLVIDEVGYI 181 >gi|194364750|ref|YP_002027360.1| hypothetical protein Smal_0972 [Stenotrophomonas maltophilia R551-3] gi|194347554|gb|ACF50677.1| DnaA regulatory inactivator Hda [Stenotrophomonas maltophilia R551-3] Length = 235 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 62/232 (26%), Positives = 97/232 (41%), Gaps = 33/232 (14%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P D R TFI AL ++IA SH + +++ + G GKTH QA+ Sbjct: 13 PRDQRL--ETFIGAPDG--ALAQLRAIAVGASHDW-------VYLEGAAGTGKTH--QAL 59 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KL 275 A S Q Y+ R +A+ D L +L+ +D + + G + Sbjct: 60 AMCSSAEQAGRLPTYVPLASAAGRVRAAL---------DGLEARELVALDGLDEIAGNRE 110 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + N + V+ A + P EL + P +RSRL V V L D E R ++ Sbjct: 111 DEIALFDFHNRARAAGVTVLYTAQKAPGELGLVLPDLRSRLGQCVRVLLQPLDEEGRAAV 170 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF--RHSFA 385 L+ R A+ + L I+E + + ++ +GREL G L + R S A Sbjct: 171 LRER-ALRR----GLAIDEASIEWL---LSHTGRELGGLITLLDWLDRESLA 214 >gi|145629279|ref|ZP_01785078.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae 22.1-21] gi|145639207|ref|ZP_01794814.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII] gi|144978782|gb|EDJ88505.1| hypothetical protein CGSHi22121_10765 [Haemophilus influenzae 22.1-21] gi|145271769|gb|EDK11679.1| hypothetical protein CGSHiII_04194 [Haemophilus influenzae PittII] gi|309750783|gb|ADO80767.1| DNA replication initiation factor Had [Haemophilus influenzae R2866] Length = 231 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|145636912|ref|ZP_01792577.1| DNA replication initiation factor [Haemophilus influenzae PittHH] gi|145269993|gb|EDK09931.1| DNA replication initiation factor [Haemophilus influenzae PittHH] Length = 231 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGDKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 +L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQELVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|16125310|ref|NP_419874.1| hypothetical protein CC_1058 [Caulobacter crescentus CB15] gi|221234048|ref|YP_002516484.1| hypothetical protein CCNA_01111 [Caulobacter crescentus NA1000] gi|13422356|gb|AAK23042.1| DnaA-related protein [Caulobacter crescentus CB15] gi|220963220|gb|ACL94576.1| DnaA-related protein [Caulobacter crescentus NA1000] Length = 122 Score = 39.7 bits (91), Expect = 1.1, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 R T VR RQ+A+YL+ I + FG RD TT HA RK+E + E + ++ Sbjct: 46 RVSHTAVRARQLAIYLTHITLHWPLARVAFAFG-RDRTTCGHACRKIEDLREDEAFDRRL 104 Query: 493 VEL 495 EL Sbjct: 105 CEL 107 >gi|225018660|ref|ZP_03707852.1| hypothetical protein CLOSTMETH_02610 [Clostridium methylpentosum DSM 5476] gi|224948568|gb|EEG29777.1| hypothetical protein CLOSTMETH_02610 [Clostridium methylpentosum DSM 5476] Length = 332 Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 15/134 (11%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI--RDNCALNLKDS 256 +F+ GLGKTHL AIA +I R N V+Y + + R + R ++ + Sbjct: 188 IFMTGKTGLGKTHLSLAIAAKAIDRGYN--VIYSSVSDIVRRVSGQYFGRKQEGDDVLEL 245 Query: 257 LRNIDLLLIDDMQFLQGKLIQHEFC-----HLLNSLLDSAKQVVAAADRPPSELES-LDP 310 + DLL++DD+ G + F ++NS + + + + + P ELE Sbjct: 246 VTKTDLLILDDL----GAEFESSFSTSAVYDVINSRIAAGRPTIINTNLTPGELEKRYSE 301 Query: 311 RIRSRLQGGVSVPL 324 RI SRL + VPL Sbjct: 302 RIVSRLYAQL-VPL 314 >gi|255520158|ref|ZP_05387395.1| primosomal protein DnaI [Listeria monocytogenes FSL J1-175] Length = 307 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIH S G GK++LL A+A + + +VYL FM +I DN + Sbjct: 161 LFIHGSFGTGKSYLLGALAKELALKGISTTLVYLPE--FMREVKQSISDNTVGEKIQFAK 218 Query: 259 NIDLLLIDDM 268 ++L++DD+ Sbjct: 219 ETEVLMLDDI 228 >gi|199599518|ref|ZP_03212907.1| DNA replication protein [Lactobacillus rhamnosus HN001] gi|199589587|gb|EDY97704.1| DNA replication protein [Lactobacillus rhamnosus HN001] Length = 311 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 31/123 (25%), Positives = 57/123 (46%), Gaps = 17/123 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT+LL AIAN + + + + F+ +AI +N L DS++ Sbjct: 160 LYLSGPFGVGKTYLLGAIAN-DLASKGGIATTLIHVPTFVVEMKNAIGNNNVLKKIDSVK 218 Query: 259 NIDLLLIDDMQF----------LQGKLIQHEFCHLLNSLLDSAKQV------VAAADRPP 302 +L++DD+ + G ++Q+ + +L S K + +A DR Sbjct: 219 RAPILMLDDIGAESISPWVRDDVLGIILQYRMQEKMPTLFSSNKSMAELTESLAGTDRGN 278 Query: 303 SEL 305 SE+ Sbjct: 279 SEM 281 >gi|312126611|ref|YP_003991485.1| IstB domain-containing protein ATP-binding protein [Caldicellulosiruptor hydrothermalis 108] gi|311776630|gb|ADQ06116.1| IstB domain protein ATP-binding protein [Caldicellulosiruptor hydrothermalis 108] Length = 283 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 15/121 (12%) Query: 156 SPLDSRFVFSTF------IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S L RF TF + + RVAL AQ+ EV +H + L S G+GK Sbjct: 90 SNLGRRFRERTFENFRFELNPEAYRVALDYAQNF-EVYAH-----KGQGLIFTGSFGVGK 143 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA--IRDNCALNLKDSLRNIDLLLIDD 267 THL AIAN I + ++ VV+ + + + A + A ++ L +DLL+IDD Sbjct: 144 THLAAAIANYLIIHK-SVPVVFGSVSFLLGELKRAYELEAISADRIEKQLCTVDLLVIDD 202 Query: 268 M 268 + Sbjct: 203 L 203 >gi|229543580|ref|ZP_04432640.1| Primosomal DnaI domain protein [Bacillus coagulans 36D1] gi|229328000|gb|EEN93675.1| Primosomal DnaI domain protein [Bacillus coagulans 36D1] Length = 314 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 5/76 (6%) Query: 195 RLNPLFIHASVGLGKTHLLQAIAN--ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 ++ L+++ + G+GK++LL AIAN A +K+ +L +VY+ F +I D+ Sbjct: 163 KMKGLYLYGNFGVGKSYLLGAIANELADLKQVSSL-IVYVPE--FFREMKDSIGDHSTGE 219 Query: 253 LKDSLRNIDLLLIDDM 268 D+++ + +L++DD+ Sbjct: 220 KLDTVKQVPVLMLDDI 235 >gi|226951062|ref|YP_002806153.1| putative DNA replication protein DnaC [Clostridium botulinum A2 str. Kyoto] gi|226842228|gb|ACO84894.1| putative DNA replication protein DnaC [Clostridium botulinum A2 str. Kyoto] Length = 325 Score = 39.7 bits (91), Expect = 1.2, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 14/132 (10%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N +FI + G GKT L IA + R VVY TA+ + S I+ N +L+D Sbjct: 185 NFMFI-GNPGTGKTFLSNCIAKELLDRGN--FVVYRTADELIQNLRS-IKFNNDKHLEDI 240 Query: 257 LRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + N DLL+IDD+ +F + +L F + LL K ++++ S L++ Sbjct: 241 IINCDLLIIDDLGTESINEFSKVEL----FNFINKKLLMRKKMMISSNYSIESILKNYSE 296 Query: 311 RIRSRLQGGVSV 322 RI SRL G ++ Sbjct: 297 RISSRLLGNFTL 308 >gi|321309519|ref|YP_004191848.1| chromosomal replication initiator protein DnaA [Mycoplasma haemofelis str. Langford 1] gi|319801363|emb|CBY92009.1| chromosomal replication initiator protein DnaA [Mycoplasma haemofelis str. Langford 1] Length = 420 Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust. Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 4/81 (4%) Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 + K N ++L N R + V R + +YL K + EIG+ F ++ H+T+ H++ Sbjct: 342 FICKKLNFKTEEILENTRKKETVSKRDIVIYLLKTKFNLTHQEIGKIF-NKKHSTISHSL 400 Query: 477 RKV-EKMLETDITLKKEVELL 496 +K+ K+LE + KK +E L Sbjct: 401 KKMNNKLLERN--FKKYLESL 419 >gi|168183688|ref|ZP_02618352.1| putative DNA replication protein DnaC [Clostridium botulinum Bf] gi|182673146|gb|EDT85107.1| putative DNA replication protein DnaC [Clostridium botulinum Bf] Length = 325 Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 14/139 (10%) Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 + + N +FI + G GKT L IA + R VVY TA+ + S I+ + Sbjct: 178 NFDKIDENFMFI-GTPGTGKTFLSNCIAKELLDRGN--FVVYRTADELIQNLRS-IKFSN 233 Query: 250 ALNLKDSLRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +L+D L N DLL+IDD+ +F + +L F + LL K ++++ + Sbjct: 234 DKHLEDILINCDLLIIDDLGTESINEFSKVEL----FNFINKKLLMRKKMIISSNYSIET 289 Query: 304 ELESLDPRIRSRLQGGVSV 322 L+S RI SRL G ++ Sbjct: 290 ILKSYSERISSRLLGNFTL 308 >gi|317124006|ref|YP_004098118.1| IstB domain protein ATP-binding protein [Intrasporangium calvum DSM 43043] gi|317124272|ref|YP_004098384.1| IstB domain protein ATP-binding protein [Intrasporangium calvum DSM 43043] gi|315588094|gb|ADU47391.1| IstB domain protein ATP-binding protein [Intrasporangium calvum DSM 43043] gi|315588360|gb|ADU47657.1| IstB domain protein ATP-binding protein [Intrasporangium calvum DSM 43043] Length = 278 Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 2/106 (1%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 + I VG GKTHL A+ +A+I+R+ + VV+ A+ R +A D+ L Sbjct: 125 VLILGPVGAGKTHLATALGHAAIRRR--MSVVFARADKLFTRLRAARLDHTLEAEVRRLA 182 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 +DLL++DD Q + L K + ++R PSE Sbjct: 183 AVDLLIVDDFALRALDATQTNDFYELVVERHRKKSTIWVSNREPSE 228 >gi|237797067|ref|YP_002864619.1| putative DNA replication protein DnaC [Clostridium botulinum Ba4 str. 657] gi|229263415|gb|ACQ54448.1| dnaC family protein [Clostridium botulinum Ba4 str. 657] Length = 325 Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust. Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 14/132 (10%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N +FI + G GKT L IA + R VVY TA+ + S I+ + +L+D Sbjct: 185 NFMFI-GTPGTGKTFLSNCIAKELLDRGN--FVVYRTADELIQNLRS-IKFSNDKHLEDI 240 Query: 257 LRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 L N DLL+IDD+ +F + +L F + LL K ++++ + L+S Sbjct: 241 LINCDLLIIDDLGTESINEFSKVEL----FNFINKKLLMRKKMIISSNYSIETILKSYSE 296 Query: 311 RIRSRLQGGVSV 322 RI SRL G ++ Sbjct: 297 RISSRLLGNFTL 308 >gi|42519523|ref|NP_965453.1| primosomal protein DnaI [Lactobacillus johnsonii NCC 533] gi|41583812|gb|AAS09419.1| primosomal protein DnaI [Lactobacillus johnsonii NCC 533] Length = 299 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L + N SI RQ + RVV+L F+ S +DN + D + Sbjct: 154 LYLTGDFGVGKTYILAGLTN-SIARQGS-RVVFLHVPSFIASLGSHFQDNSLNDEIDRIS 211 Query: 259 NIDLLLIDDM 268 + +L+ DD+ Sbjct: 212 SAPVLIFDDI 221 >gi|218678728|ref|ZP_03526625.1| chromosomal replication initiation protein [Rhizobium etli CIAT 894] Length = 31 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 19/31 (61%), Positives = 25/31 (80%) Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +LHAVRK+E+++ D L EVELLKRLI+E Sbjct: 1 MLHAVRKIEELISGDTKLSHEVELLKRLINE 31 >gi|304439018|ref|ZP_07398938.1| DNA replication protein DnaC [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372507|gb|EFM26093.1| DNA replication protein DnaC [Peptoniphilus duerdenii ATCC BAA-1640] Length = 318 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 10/141 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD--- 255 L + + G GKT LL IA + + VVY T+ + ++ F R +N + Sbjct: 181 LLFYGATGQGKTFLLNCIAREILDSGHS--VVYQTS-WELFDFLEERRFRRDINFDENKF 237 Query: 256 -SLRNIDLLLIDDM-QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPRI 312 +L + DLL+IDD+ KL+ E +++N L S K+ + + + P EL + R+ Sbjct: 238 KALLSCDLLIIDDLGSEFSSKLVAAELFNIINLRLLSGKKCLFSTNLDPEELAATYSDRV 297 Query: 313 RSRLQGGVSVPLGLHDYEMRF 333 SR+ VP+ + ++R+ Sbjct: 298 FSRVFEKF-VPIKFYGKDLRW 317 >gi|269468308|gb|EEZ79987.1| DnaA family protein [uncultured SUP05 cluster bacterium] Length = 224 Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 73/165 (44%), Gaps = 25/165 (15%) Query: 154 FGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 G P LDS+ + F+ G N Q I + S T + ++++ G+TH Sbjct: 4 LGLPFSLDSKMLLDNFV-GKKN-------QQILDFISQLSTQKAPSVVYVYGGKSSGRTH 55 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LLQ A A++K + L V Y+ F + DN L ++D + +D++ L Sbjct: 56 LLQGCAFAALKEK--LEVTYID---FNQDLPDGVMDN--------LESLDWVCLDNVNCL 102 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 Q E L N + + +++ + D P+EL L +++RL Sbjct: 103 NENQ-QQELFDLYNRSVQTQVKLIMSGDDLPTELNLL-KDLKTRL 145 >gi|163752657|ref|ZP_02159827.1| putative transposase [Shewanella benthica KT99] gi|161327451|gb|EDP98667.1| putative transposase [Shewanella benthica KT99] Length = 250 Score = 39.3 bits (90), Expect = 1.5, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 20/142 (14%) Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G S V ++A Q + + N L AS GLGKTH+ A+ A I++ ++RV Sbjct: 71 GFSEVVGISAVQVKRKASELSWLRQGHNILLFGAS-GLGKTHIAAALGYALIEQ--SVRV 127 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNID---LLLIDDMQFLQG---------KLIQ 277 + T + A L L+D+L+ +D LL++DD+ +++ +LI Sbjct: 128 KFTTGTAMVQHLQKA---REGLGLEDALKKLDKYELLILDDIGYVKKSDSESQVLFELIA 184 Query: 278 HEFCHLLNSLLDSAKQVVAAAD 299 H + NSL+ + QV + D Sbjct: 185 HRYER--NSLVITTNQVFSEWD 204 >gi|307244711|ref|ZP_07526813.1| putative DNA replication protein DnaC [Peptostreptococcus stomatis DSM 17678] gi|306491888|gb|EFM63939.1| putative DNA replication protein DnaC [Peptostreptococcus stomatis DSM 17678] Length = 329 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 10/144 (6%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM-----WRFASAIRDNCAL 251 N L G GKT L IA + R V+Y TA M ++F + + Sbjct: 188 NNLLFRGPTGQGKTFLCSCIAKQIMDR--GYTVIYQTAFNLMDIIERYKFKTEYYTDSDE 245 Query: 252 NLKDSLRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL-D 309 +L N DLL+IDD+ L E ++LNS L+S K+V+ + + + + +L Sbjct: 246 ENYRNLFNCDLLIIDDLGTELINSFTSAELFNILNSRLNSRKKVIISTNLDIAHIGNLYT 305 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRF 333 R SR+ G + + ++RF Sbjct: 306 DRTLSRIVGNFHI-YDFYGSDLRF 328 >gi|169829543|ref|YP_001699701.1| primosomal protein [Lysinibacillus sphaericus C3-41] gi|168994031|gb|ACA41571.1| Primosomal protein [Lysinibacillus sphaericus C3-41] Length = 289 Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 10/97 (10%) Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN--ASIKRQPNLRVVYL 232 +A AAQ + G+ + +++ G+GK+ +L AIAN ASIK +R V + Sbjct: 121 IAQKAAQFVKATKESGHLPSK--GFYLYGKFGVGKSFVLGAIANELASIK----IRSVVV 174 Query: 233 TAEYFMWRFASAIRDNCALNLK-DSLRNIDLLLIDDM 268 F+ +AI DN LN K D ++ +L++DD+ Sbjct: 175 FVPEFLREMKNAIGDN-TLNEKIDYIKKAPVLMLDDL 210 >gi|322515535|ref|ZP_08068519.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976] gi|322118425|gb|EFX90682.1| DnaA regulatory inactivator Hda [Actinobacillus ureae ATCC 25976] Length = 236 Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 89/206 (43%), Gaps = 25/206 (12%) Query: 179 AAQSIAEVDS--HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A S+ +DS + V+ +I GK+HLL+A++N + Q + L Sbjct: 20 AENSLVLLDSLRQNFVDVQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQQTSSYIPLEKSQ 79 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLN------SLLD 289 + F+ + DN +D++ +DD+Q + G + + +L N L Sbjct: 80 Y---FSPMVLDNA--------EQLDVICLDDLQVVAGDEAWELAIFNLFNQIREQQGLFG 128 Query: 290 SAKQ--VVAAADRPPSELESLDPRIRSRLQGGVSVPLG-LHDYEMRFSILKNRLAISQKE 346 S + ++ +AD PP +L+ P +RSRL G L L D + R I+ R A + Sbjct: 129 SGHKTLLLISADCPPHQLKINLPDLRSRLTWGEVYQLNDLSDEQKR--IILQRNAYQKGM 186 Query: 347 DPKLNINEEVLMHVARTVTTSGRELD 372 + + +L + R + T ELD Sbjct: 187 ELSDEVANFLLKRLDRDLQTLSTELD 212 >gi|187935318|ref|YP_001887705.1| DNA replication protein DnaC [Clostridium botulinum B str. Eklund 17B] gi|187723471|gb|ACD24692.1| dnaC family protein [Clostridium botulinum B str. Eklund 17B] Length = 326 Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 7/153 (4%) Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 +++ +N LF + G GKT+L ++ A + + VVY T++ + S IR N Sbjct: 178 NFSSQNVNLLFF-GNPGSGKTYLSYCLSKAILDK--GYLVVYKTSDELIKNL-SEIRFNN 233 Query: 250 ALNLKDSLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 NL+ L N DLL+IDD+ + L I F + +L+ K +++ P + Sbjct: 234 NYNLESILLNCDLLIIDDLGAEHLNEFSITELFNIINKRILNKKKMLISTNLTLPGITKQ 293 Query: 308 LDPRIRSRLQGGVSV-PLGLHDYEMRFSILKNR 339 RI SRL G + D ++ ++ KNR Sbjct: 294 YTERIASRLLGDFKLCKFYSEDIRIKKNLQKNR 326 >gi|219849221|ref|YP_002463654.1| IstB domain-containing protein ATP-binding protein [Chloroflexus aggregans DSM 9485] gi|219543480|gb|ACL25218.1| IstB domain protein ATP-binding protein [Chloroflexus aggregans DSM 9485] Length = 241 Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 19/127 (14%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL- 257 L + G GKTHL AIAN +++R ++ V++ + S N + Sbjct: 85 LILFGGYGCGKTHLAAAIANEALER--HMPVLFTVVPDLLDHLRSTFGPNSETAYDERFE 142 Query: 258 --RNIDLLLIDDMQ------FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 R++ LL++DD+ + + KL Q ++N + A V ++R P + +D Sbjct: 143 LVRDVALLILDDLGTENTTPWAREKLYQ-----IMNHRYNYALPTVITSNRDPKD---ID 194 Query: 310 PRIRSRL 316 PRI SR+ Sbjct: 195 PRILSRM 201 >gi|89894385|ref|YP_517872.1| hypothetical protein DSY1639 [Desulfitobacterium hafniense Y51] gi|89333833|dbj|BAE83428.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 282 Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 20/110 (18%) Query: 166 TFIEGSSNRVALTAAQSIAEV------DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 +++EG ALTA + E D HG + + P VG GKT L AIANA Sbjct: 107 SYLEG-----ALTALHASKEFVARCLDDYHGLGLILIGP------VGAGKTFLAAAIANA 155 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIR-DNCALNLKDSLRNIDLLLIDDM 268 ++++ +V++L + + + + D L+L D+ R I +L++DD+ Sbjct: 156 LMEQEH--QVLFLVVPDLLDQLRATYKTDENELDLLDTAREIPILILDDL 203 >gi|296284304|ref|ZP_06862302.1| hypothetical protein CbatJ_11796 [Citromicrobium bathyomarinum JL354] Length = 107 Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%) Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP--RSFPEIGRRFGDRDHTTVLH 474 V + ++R DL S RR VV R + ++L + P S+P+I RDH T++H Sbjct: 14 FVERETGLTRFDLFSKRRTADVVWARTLLVWLLREHRPGSMSYPKIASLLNGRDHATIIH 73 Query: 475 A 475 A Sbjct: 74 A 74 >gi|304393561|ref|ZP_07375489.1| DnaA related protein [Ahrensia sp. R2A130] gi|303294568|gb|EFL88940.1| DnaA related protein [Ahrensia sp. R2A130] Length = 193 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query: 416 RMVAKHYNISRNDLLS-NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 R VA +S + L S +R + RQ+AMYLS M E+GR F RD TTV + Sbjct: 85 RTVAIALQVSLDALNSPDRENGETSKARQIAMYLSATMFNLCATEVGRAF-KRDRTTVAY 143 Query: 475 AVRKVEKMLE 484 A+ ++E+ E Sbjct: 144 ALERIEEQRE 153 >gi|323303728|gb|EGA57514.1| Afg2p [Saccharomyces cerevisiae FostersB] gi|323307896|gb|EGA61156.1| Afg2p [Saccharomyces cerevisiae FostersO] Length = 780 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKDS 256 + +H G GKT LL+ +AN S + + ++Y + +A+RD N A + S Sbjct: 282 ILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKY-LGETEAALRDIFNEARKYQPS 340 Query: 257 LRNIDLL-------LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + ID + DD ++ +++ L++ + + K VV AA P+ S+D Sbjct: 341 IIFIDEIDSIAPNRANDDSGEVESRVVA-TLLTLMDGMGAAGKVVVIAATNRPN---SVD 396 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 P +R + V +G+ D + RF IL + + Sbjct: 397 PALRRPGRFDQEVEIGIPDVDARFDILTKQFS 428 >gi|219668810|ref|YP_002459245.1| IstB domain protein ATP-binding protein [Desulfitobacterium hafniense DCB-2] gi|219539070|gb|ACL20809.1| IstB domain protein ATP-binding protein [Desulfitobacterium hafniense DCB-2] Length = 275 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 20/110 (18%) Query: 166 TFIEGSSNRVALTAAQSIAEV------DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 +++EG ALTA + E D HG + + P VG GKT L AIANA Sbjct: 100 SYLEG-----ALTALHASKEFVARCLDDYHGLGLILIGP------VGAGKTFLAAAIANA 148 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIR-DNCALNLKDSLRNIDLLLIDDM 268 ++++ +V++L + + + + D L+L D+ R I +L++DD+ Sbjct: 149 LMEQEH--QVLFLVVPDLLDQLRATYKTDENELDLLDTAREIPILILDDL 196 >gi|192361067|ref|YP_001982112.1| DnaA family protein [Cellvibrio japonicus Ueda107] gi|190687232|gb|ACE84910.1| DnaA family protein [Cellvibrio japonicus Ueda107] Length = 239 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 27/132 (20%) Query: 199 LFIHASVGLGKTHLLQAIA------NASIKRQPNLR--VVYLTAEYFMWRFASAIRDNCA 250 +++ + G G THLLQA SI+ P LR Y AE F+ Sbjct: 52 VYLWGAPGAGLTHLLQASCHYAQTLGQSIQYLP-LRDMAGYAPAELFV------------ 98 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 L +DL+ +D + + G+ + +L N+L D K+++ AA++ P EL Sbjct: 99 -----GLEALDLVCLDCLTSIAGRGDWELAIFNLYNALRDGGKKLLVAAEQSPRELPLQL 153 Query: 310 PRIRSRLQGGVS 321 +RSRLQ GV+ Sbjct: 154 EDLRSRLQWGVT 165 >gi|148655299|ref|YP_001275504.1| IstB ATP binding domain-containing protein [Roseiflexus sp. RS-1] gi|148567409|gb|ABQ89554.1| IstB domain protein ATP-binding protein [Roseiflexus sp. RS-1] Length = 263 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 19/127 (14%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---D 255 L + + G GKTHL AIAN + Q + RV++ + S + + + Sbjct: 111 LILFGNYGCGKTHLAAAIANQLL--QNHYRVLFAVVPDLLDHLRSTFGPSSEIEYDQRFE 168 Query: 256 SLRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 +R D+L++DD+ + + KL Q ++N + A V ++R P E +D Sbjct: 169 DIREADVLILDDLGTENTTPWAREKLFQ-----IINHRYNFALPTVITSNRKP---EEID 220 Query: 310 PRIRSRL 316 PRI SR+ Sbjct: 221 PRIFSRM 227 >gi|151940918|gb|EDN59300.1| ATPase family protein [Saccharomyces cerevisiae YJM789] Length = 780 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKDS 256 + +H G GKT LL+ +AN S + + ++Y + +A+RD N A + S Sbjct: 282 ILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKY-LGETEAALRDIFNEARKYQPS 340 Query: 257 LRNIDLL-------LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + ID + DD ++ +++ L++ + + K VV AA P+ S+D Sbjct: 341 IIFIDEIDSIAPNRANDDSGEVESRVVA-TLLTLMDGMGAAGKVVVIAATNRPN---SVD 396 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 P +R + V +G+ D + RF IL + + Sbjct: 397 PALRRPGRFDQEVEIGIPDVDARFDILTKQFS 428 >gi|6323429|ref|NP_013501.1| Afg2p [Saccharomyces cerevisiae S288c] gi|416590|sp|P32794|AFG2_YEAST RecName: Full=ATPase family gene 2 protein gi|295573|gb|AAC37367.1| AFG2 [Saccharomyces cerevisiae] gi|625113|gb|AAB82355.1| Afg2p [Saccharomyces cerevisiae] gi|51013683|gb|AAT93135.1| YLR397C [Saccharomyces cerevisiae] gi|259148375|emb|CAY81622.1| Afg2p [Saccharomyces cerevisiae EC1118] gi|285813802|tpg|DAA09698.1| TPA: Afg2p [Saccharomyces cerevisiae S288c] gi|323332432|gb|EGA73841.1| Afg2p [Saccharomyces cerevisiae AWRI796] gi|323336415|gb|EGA77683.1| Afg2p [Saccharomyces cerevisiae Vin13] gi|323353724|gb|EGA85580.1| Afg2p [Saccharomyces cerevisiae VL3] Length = 780 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKDS 256 + +H G GKT LL+ +AN S + + ++Y + +A+RD N A + S Sbjct: 282 ILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKY-LGETEAALRDIFNEARKYQPS 340 Query: 257 LRNIDLL-------LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + ID + DD ++ +++ L++ + + K VV AA P+ S+D Sbjct: 341 IIFIDEIDSIAPNRANDDSGEVESRVVA-TLLTLMDGMGAAGKVVVIAATNRPN---SVD 396 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 P +R + V +G+ D + RF IL + + Sbjct: 397 PALRRPGRFDQEVEIGIPDVDARFDILTKQFS 428 >gi|292491000|ref|YP_003526439.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4] gi|291579595|gb|ADE14052.1| DnaA regulatory inactivator Hda [Nitrosococcus halophilus Nc4] Length = 235 Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 84/199 (42%), Gaps = 30/199 (15%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 +G+P F + SNR + A + + + + L++ G+GKTHLL Sbjct: 13 YGAP-----SFENYYLADSNRELVAAVERCGQGEGERF-------LYLWGPSGVGKTHLL 60 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID---LLLIDDMQF 270 A A+ +R RV Y+ + A+ + LR ++ L+ IDD+ Sbjct: 61 LAACQAAAQR--GERVAYVPLK------------RAAIMAPEILRGLEAAALVAIDDIDR 106 Query: 271 LQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + G + + HL N + Q++ A+ + P L L P +RSRL G+ L D Sbjct: 107 IAGCRYWEESLLHLYNLSREGPSQLLLASSKKPGALPLLLPDLRSRLGWGLVYQLQPLDD 166 Query: 330 EMRFSILKNRLAISQKEDP 348 + + LK + A E P Sbjct: 167 HQKHAALKLQAAKRGMELP 185 >gi|256545462|ref|ZP_05472824.1| DNA replication protein [Anaerococcus vaginalis ATCC 51170] gi|256398858|gb|EEU12473.1| DNA replication protein [Anaerococcus vaginalis ATCC 51170] Length = 319 Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 9/131 (6%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY---FM--WRFASAIRDNCALNL 253 L+I VG GKT L+ +IA + R N V+YLTA FM + +A + R Sbjct: 179 LYIFGDVGRGKTFLINSIAKEILDR--NYSVIYLTATKLFSFMNDYLYAFSERKEELKER 236 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ESLDPR 311 D + DLL+IDD+ + + ++N + + K ++ +++ EL E R Sbjct: 237 YDLIFESDLLIIDDLGSENDRNSNESNLFEIVNDRMINKKPIIFSSNYSEDELMEFYGDR 296 Query: 312 IRSRLQGGVSV 322 I SR+ G V Sbjct: 297 IFSRIIGSSHV 307 >gi|308069817|ref|YP_003871422.1| DNA replication protein [Paenibacillus polymyxa E681] gi|305859096|gb|ADM70884.1| DNA replication protein [Paenibacillus polymyxa E681] Length = 318 Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust. Identities = 37/155 (23%), Positives = 73/155 (47%), Gaps = 12/155 (7%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV-----FSTF--IEGSSNR 174 + + PS TK + + K P+++ + + G + S ++ +TF IE R Sbjct: 84 SVAEPSPTKGDELVFRLRKCPLLVAHEREQGI-GQRIKSHYIPAHILNATFEDIEPDPQR 142 Query: 175 V-ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 + A+ A S + G TT L + + +G+GK+ ++ AIA KR ++ +VY+ Sbjct: 143 ISAIAEAISFCDEFVPGQTTTGL---YFYGQMGVGKSRIVGAIAQELAKRDVSVLMVYVP 199 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 + A + + D+LR + +L++DD+ Sbjct: 200 DFLLEVKDAIGSKTESVESKLDALRTVPVLILDDI 234 >gi|227890181|ref|ZP_04007986.1| DNA replication protein [Lactobacillus johnsonii ATCC 33200] gi|227849276|gb|EEJ59362.1| DNA replication protein [Lactobacillus johnsonii ATCC 33200] Length = 266 Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust. Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 11/132 (8%) Query: 201 IHASVGLGKTHLLQAIANA-SIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL----NLKD 255 ++ + G GKTHL AI A + P + +++ E + ++ + + N+KD Sbjct: 118 LYGTPGTGKTHLSMAILKAVNENADPAQKCLFMNVESLFGKIKASFENPNSWWTVENVKD 177 Query: 256 SLRNIDLLLIDDMQF-----LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL-D 309 ++DLL++DD+ QG + L +LD ++V+ + +L + + Sbjct: 178 LFESVDLLVLDDLGTESAMRRQGDEASNFVQETLKEILDKQRRVIITTNLNSDQLNRVYN 237 Query: 310 PRIRSRLQGGVS 321 P++ SR+ G S Sbjct: 238 PKVVSRILRGSS 249 >gi|229061576|ref|ZP_04198920.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus AH603] gi|228717810|gb|EEL69460.1| Prophage LambdaBa02, DNA replication protein DnaC [Bacillus cereus AH603] Length = 218 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 7/126 (5%) Query: 147 KQTISPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 K+ I +F S L RF STF ++TA Q IA+ + + L I Sbjct: 18 KREIDKLFSISNLGERFKKSTFEAFREREGSVTAGQ-IAKKYVNEFKKWNGESLMIWGEP 76 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI---DL 262 G GKTHL AIAN K+ VV+ + + R S + N +R + DL Sbjct: 77 GNGKTHLAAAIANELSKQ--GFIVVFQSVPELLQRIRSTFNSDNKENETQIMRALLECDL 134 Query: 263 LLIDDM 268 L++DD+ Sbjct: 135 LILDDI 140 >gi|323466102|gb|ADX69789.1| Primosome component (Helicase loader) [Lactobacillus helveticus H10] Length = 302 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + N VV+L F+ AS DN + L Sbjct: 153 LYLSGDYGVGKTYILAGLANYVVTNM-NKNVVFLHVPTFIAGLASHFDDNSLQSEIRRLS 211 Query: 259 NIDLLLIDDM 268 DLL++DD+ Sbjct: 212 ECDLLILDDI 221 >gi|319896920|ref|YP_004135115.1| atpase regulatory factor involved in dnaa inactivation [Haemophilus influenzae F3031] gi|317432424|emb|CBY80779.1| ATPase regulatory factor involved in DnaA inactivation [Haemophilus influenzae F3031] Length = 231 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 13/123 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I + G GKTHLL+A +N + Q V L+ + F++A+ +N L Sbjct: 44 FYIWGNKGSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LE 92 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 L+ +DD+Q + G + L N + S K ++ +AD+ PS L P + SRL Sbjct: 93 QQALVCLDDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRL 152 Query: 317 QGG 319 G Sbjct: 153 TWG 155 >gi|256822898|ref|YP_003146861.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069] gi|256796437|gb|ACV27093.1| DnaA regulatory inactivator Hda [Kangiella koreensis DSM 16069] Length = 229 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 24/165 (14%) Query: 157 PLD----SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 PLD S F+ F+ G N++ L ++I + +S + ++I++ G G++HL Sbjct: 5 PLDIELHSDATFANFMVGE-NQLLLQKLEAICQGES--------DFIYIYSEQGHGRSHL 55 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ-FL 271 LQA+ +A ++ P+ + YL E M + D L D + +D ++ + Sbjct: 56 LQALTHAYSEQNPDKLIAYLPLENSM----------LVPQMLDGLVAFDCVSLDGIEKVI 105 Query: 272 QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 K Q +L N L + K + PS+L ++SRL Sbjct: 106 ADKEWQTAIFNLYNQLKEQGKSFLITGLNAPSQLALELKDLKSRL 150 >gi|190150693|ref|YP_001969218.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189915824|gb|ACE62076.1| hypothetical protein APP7_1424 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 246 Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 25/206 (12%) Query: 179 AAQSIAEVDS--HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A S+ +DS + V+ +I GK+HLL+A++N + Q + L Sbjct: 30 AENSLVLLDSLRQNFIDVQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQQTSSYIPLEKSQ 89 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG----KLIQHEFCHLL---NSLLD 289 + F+ + DN +D++ +DD+Q + G +L +L+ SL Sbjct: 90 Y---FSPMVLDNA--------EQLDVICLDDIQIVAGNEEWELAIFNLFNLIREQQSLFG 138 Query: 290 SAKQ--VVAAADRPPSELESLDPRIRSRLQGGVSVPLG-LHDYEMRFSILKNRLAISQKE 346 + + ++ +AD PP +L+ P +RSRL G L L D + R I+ R A + Sbjct: 139 NGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQLNDLSDDQKR--IILQRNAYQKGM 196 Query: 347 DPKLNINEEVLMHVARTVTTSGRELD 372 + + +L + R + T ELD Sbjct: 197 ELSDEVANFLLKRLDRDLQTLSTELD 222 >gi|258539926|ref|YP_003174425.1| primosomal protein DnaI [Lactobacillus rhamnosus Lc 705] gi|257151602|emb|CAR90574.1| Primosomal protein DnaI [Lactobacillus rhamnosus Lc 705] Length = 311 Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 56/122 (45%), Gaps = 17/122 (13%) Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 ++ G+GKT+LL AIAN + + + + F+ +AI +N L DS++ Sbjct: 161 YLSGPFGVGKTYLLGAIAN-DLASKGGIATTLIHVPTFVVEMKNAIGNNSVLKKIDSVKR 219 Query: 260 IDLLLIDDMQF----------LQGKLIQHEFCHLLNSLLDSAKQV------VAAADRPPS 303 +L++DD+ + G ++Q+ + +L S K + +A DR S Sbjct: 220 APILMLDDIGAESISPWVRDDVLGIILQYRMQEKMPTLFSSNKSMAELTESLAGTDRGNS 279 Query: 304 EL 305 E+ Sbjct: 280 EM 281 >gi|262375589|ref|ZP_06068822.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145] gi|262309843|gb|EEY90973.1| DnaA regulatory inactivator Hda [Acinetobacter lwoffii SH145] Length = 234 Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 28/140 (20%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 +N +I+ G GK+HLL AI ++ YL SAI+ + L L D Sbjct: 39 INRFYIYGGAGTGKSHLLSAICDS-----------YLEVG------KSAIQVSL-LELLD 80 Query: 256 -------SLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 SL DL+ +DD++ + G Q HL+N + Q+V ++ P EL+ Sbjct: 81 APTEAITSLDRFDLVALDDIEAISGVPHWQRAVFHLINYNNEGGGQLVFSSRFAPIELKL 140 Query: 308 LDPRIRSRLQGGVS--VPLG 325 P ++SRL VS VP G Sbjct: 141 ELPDLQSRLTQAVSTRVPSG 160 >gi|260103160|ref|ZP_05753397.1| primosomal protein DnaI [Lactobacillus helveticus DSM 20075] gi|260083019|gb|EEW67139.1| primosomal protein DnaI [Lactobacillus helveticus DSM 20075] gi|328464764|gb|EGF36082.1| primosomal protein DnaI [Lactobacillus helveticus MTCC 5463] Length = 308 Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + N VV+L F+ AS DN + L Sbjct: 159 LYLSGDYGVGKTYILAGLANYVVTNM-NKNVVFLHVPTFIAGLASHFDDNSLQSEIRRLS 217 Query: 259 NIDLLLIDDM 268 DLL++DD+ Sbjct: 218 ECDLLILDDI 227 >gi|53728974|ref|ZP_00134440.2| COG0593: ATPase involved in DNA replication initiation [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208837|ref|YP_001054062.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae L20] gi|165976798|ref|YP_001652391.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250541|ref|ZP_07336738.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303253536|ref|ZP_07339675.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307246294|ref|ZP_07528375.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307248407|ref|ZP_07530430.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307250635|ref|ZP_07532575.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307253015|ref|ZP_07534902.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307255278|ref|ZP_07537093.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307257441|ref|ZP_07539210.1| hypothetical protein appser10_14380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307259713|ref|ZP_07541436.1| hypothetical protein appser11_15100 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307261861|ref|ZP_07543525.1| hypothetical protein appser12_14200 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307264043|ref|ZP_07545643.1| hypothetical protein appser13_14480 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126097629|gb|ABN74457.1| hypothetical protein APL_1373 [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165876899|gb|ABY69947.1| ATPase involved in DNA replication initiation [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302647646|gb|EFL77863.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650529|gb|EFL80688.1| DNA replication initiation factor [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306852903|gb|EFM85127.1| hypothetical protein appser1_14980 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306855145|gb|EFM87325.1| hypothetical protein appser2_13830 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306857338|gb|EFM89454.1| hypothetical protein appser4_14110 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306859544|gb|EFM91570.1| hypothetical protein appser6_15250 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306861827|gb|EFM93806.1| hypothetical protein appser9_15130 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306864093|gb|EFM96007.1| hypothetical protein appser10_14380 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306866253|gb|EFM98118.1| hypothetical protein appser11_15100 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306868478|gb|EFN00291.1| hypothetical protein appser12_14200 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306870654|gb|EFN02398.1| hypothetical protein appser13_14480 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 236 Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust. Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 25/206 (12%) Query: 179 AAQSIAEVDS--HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A S+ +DS + V+ +I GK+HLL+A++N + Q + L Sbjct: 20 AENSLVLLDSLRQNFIDVQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQQTSSYIPLEKSQ 79 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG----KLIQHEFCHLL---NSLLD 289 + F+ + DN +D++ +DD+Q + G +L +L+ SL Sbjct: 80 Y---FSPMVLDNA--------EQLDVICLDDIQIVAGNEEWELAIFNLFNLIREQQSLFG 128 Query: 290 SAKQ--VVAAADRPPSELESLDPRIRSRLQGGVSVPLG-LHDYEMRFSILKNRLAISQKE 346 + + ++ +AD PP +L+ P +RSRL G L L D + R I+ R A + Sbjct: 129 NGHKTLLLISADCPPHQLQINLPDLRSRLTWGEVYQLNDLSDDQKR--IILQRNAYQKGM 186 Query: 347 DPKLNINEEVLMHVARTVTTSGRELD 372 + + +L + R + T ELD Sbjct: 187 ELSDEVANFLLKRLDRDLQTLSTELD 212 >gi|212638368|ref|YP_002314888.1| primosomal protein DnaI [Anoxybacillus flavithermus WK1] gi|212559848|gb|ACJ32903.1| Primosome component, helicase loader [Anoxybacillus flavithermus WK1] Length = 311 Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust. Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R L+++ S G+GKT+LL A+AN KR +VY+ F+ S+++ + + Sbjct: 159 RTKGLYLYGSFGVGKTYLLSAMANELAKRHIASFLVYVPE--FVRSLKSSLQTDAFQDTI 216 Query: 255 DSLRNIDLLLIDDM 268 + + + +L++DD+ Sbjct: 217 EYAKQVPVLMLDDL 230 >gi|50085702|ref|YP_047212.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter sp. ADP1] gi|49531678|emb|CAG69390.1| putative chromosomal replication initiator, DnaA-type [Acinetobacter sp. ADP1] Length = 235 Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 14/131 (10%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIK-RQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 +N +I+ G GK+HLL AI ++ ++ + ++V L + + Sbjct: 39 MNRFYIYGGAGSGKSHLLSAICDSYLEIGKSAIKVSLLELL------------DAPIEAI 86 Query: 255 DSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 SL DL+ +DD++ + G Q HL+N + Q+V ++ P EL P ++ Sbjct: 87 TSLERYDLVALDDIEAISGVPHWQKAVFHLINYNNEVGGQLVFSSRVAPIELRLELPDLQ 146 Query: 314 SRLQGGVSVPL 324 SRL VSV L Sbjct: 147 SRLTQAVSVKL 157 >gi|291278711|ref|YP_003495546.1| transposase IS21 family [Deferribacter desulfuricans SSM1] gi|290753413|dbj|BAI79790.1| transposase, IS21 family [Deferribacter desulfuricans SSM1] Length = 252 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 5/77 (6%) Query: 197 NPLFIHASVGLGKTHLLQAIA-NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 N LF+ G+GKTHL I A++ R+ RV++ E M +A N + Sbjct: 106 NILFV-GPPGVGKTHLAVGIGIKAAMMRK---RVLFYNTEELMTELIAAKIGNKTAEYIE 161 Query: 256 SLRNIDLLLIDDMQFLQ 272 SL IDLL+ID++ +L+ Sbjct: 162 SLSRIDLLIIDELGYLE 178 >gi|226228915|ref|YP_002763021.1| putative transposase orfB for insertion sequence element [Gemmatimonas aurantiaca T-27] gi|226092106|dbj|BAH40551.1| putative transposase orfB for insertion sequence element [Gemmatimonas aurantiaca T-27] Length = 254 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%) Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 I E+ + + T R + L + S G GK+H+ QA+ +A+I Q RV+Y A + Sbjct: 88 IFELATGRFITQREDLLLV-GSPGTGKSHVAQALGHAAI--QQGHRVLYREAHLLLEELT 144 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDM 268 A D + L + LL+IDD+ Sbjct: 145 DATLDGTRKEVFTELSTVPLLIIDDL 170 >gi|197658964|emb|CAR47837.1| putative transposition helper protein [Rhodococcus sp. PY11] Length = 256 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 28/118 (23%), Positives = 53/118 (44%), Gaps = 4/118 (3%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R L + G GKTH ++A+A+A I +RV + E A D Sbjct: 103 RAENLAVSGPSGTGKTHFVEALAHAVI--DAGMRVSWFGLESLTAAIGRAAVDGSITKAI 160 Query: 255 DSLRNIDLLLIDDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + +L+++DD+ L G+ F L+++ + + VV ++ PS +++ P+ Sbjct: 161 TRITRAELIVVDDIGMLPSGQAAAEAFYRLVDAAYER-RSVVVTSNLHPSGFDTIMPK 217 >gi|183599403|ref|ZP_02960896.1| hypothetical protein PROSTU_02876 [Providencia stuartii ATCC 25827] gi|188021645|gb|EDU59685.1| hypothetical protein PROSTU_02876 [Providencia stuartii ATCC 25827] Length = 253 Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust. Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 27/161 (16%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G + AL +A +A SHG + ++ + G GK+HLL A A A + Sbjct: 39 FASFYAGENE--ALLSAIKLAINQSHG------SYIYYWSREGGGKSHLLHA-ACAELSE 89 Query: 224 QPNLRVVYLTAE---YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 Q ++ V Y+ + YF+ + D + ++ L+ ID++Q + G + Sbjct: 90 Q-DMAVGYVPLDKRAYFV------------PEVLDGMEHLSLVCIDNIQCIAGDPEWEMA 136 Query: 280 FCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGG 319 +L N +L+ + ++ DRPP +++ P + SRL G Sbjct: 137 VFNLYNRILEIGRTCLLITGDRPPRQIDLSLPDLASRLDWG 177 >gi|27544700|dbj|BAC55045.1| DnaA [Mycobacterium gordonae] Length = 127 Score = 38.5 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 5/49 (10%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 S G+ L+ R+ F TF+ GSSNR A A +IAE + Y NPL Sbjct: 84 SAASGTSLNRRYTFDTFVIGSSNRFAHAATLAIAEAPARAY-----NPL 127 >gi|331701571|ref|YP_004398530.1| Primosomal DnaI domain-containing protein [Lactobacillus buchneri NRRL B-30929] gi|329128914|gb|AEB73467.1| Primosomal DnaI domain protein [Lactobacillus buchneri NRRL B-30929] Length = 319 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+I+ G+GKT+L AIAN +V+ + F SAI DN D ++ Sbjct: 171 LYIYGPFGVGKTYLTGAIANELADNGIQTTMVHFPS--FAVEMKSAITDNSVTEKIDVIK 228 Query: 259 NIDLLLIDDM 268 +L+IDD+ Sbjct: 229 KSPVLMIDDI 238 >gi|207342744|gb|EDZ70411.1| YLR397Cp-like protein [Saccharomyces cerevisiae AWRI1631] Length = 671 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKDS 256 + +H G GKT LL+ +AN S + + ++Y + +A+RD N A + S Sbjct: 173 ILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKY-LGETEAALRDIFNEARKYQPS 231 Query: 257 LRNIDLL-------LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + ID + DD ++ +++ L++ + + K VV AA P+ S+D Sbjct: 232 IIFIDEIDSIAPNRANDDSGEVESRVVAT-LLTLMDGMGAAGKVVVIAATNRPN---SVD 287 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 P +R + V +G+ D + RF IL + + Sbjct: 288 PALRRPGRFDQEVEIGIPDVDARFDILTKQFS 319 >gi|322807932|emb|CBZ05507.1| DNA replication protein DnaC [Clostridium botulinum H04402 065] Length = 325 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 14/132 (10%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N +F+ + G GKT L IA + R VVY TA+ + S I+ + +L+D Sbjct: 185 NFMFL-GTPGTGKTFLSNCIAKELLDRGN--FVVYRTADELIQNLRS-IKFSNDKHLEDI 240 Query: 257 LRNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 L N DLL+IDD+ +F + +L F + LL K ++++ + L+S Sbjct: 241 LINCDLLIIDDLGTESINEFSKVEL----FNFINKKLLMRKKMIISSNYSIETILKSYSE 296 Query: 311 RIRSRLQGGVSV 322 RI SRL G ++ Sbjct: 297 RISSRLLGNFTL 308 >gi|161507865|ref|YP_001577829.1| primosomal protein DnaI [Lactobacillus helveticus DPC 4571] gi|160348854|gb|ABX27528.1| Primosome component [Lactobacillus helveticus DPC 4571] Length = 302 Score = 38.5 bits (88), Expect = 2.4, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + N VV+L F+ AS DN + L Sbjct: 153 LYLSGDYGVGKTYILAGLANYVVTNM-NKNVVFLHVPTFIAGLASHFDDNSLQSEIRRLS 211 Query: 259 NIDLLLIDDM 268 DLL++DD+ Sbjct: 212 ECDLLILDDI 221 >gi|260062691|ref|YP_003195771.1| hypothetical protein RB2501_13909 [Robiginitalea biformata HTCC2501] gi|88784258|gb|EAR15428.1| hypothetical protein RB2501_13909 [Robiginitalea biformata HTCC2501] Length = 128 Score = 38.5 bits (88), Expect = 2.5, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 48/87 (55%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 +E++ ++++ + I ++L RV+ ++ + + YL+ S P+I R+ G DH+ Sbjct: 1 MEELLQVISDYSRIPMDELREKTRVQRIIYYQFIFCYLALDQKIASAPDISRKLGRFDHS 60 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLK 497 + RK+++ L D L ++++ ++ Sbjct: 61 FARRSRRKIKEWLSYDKNLARDIQAIE 87 >gi|288941358|ref|YP_003443598.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180] gi|288896730|gb|ADC62566.1| DnaA regulatory inactivator Hda [Allochromatium vinosum DSM 180] Length = 237 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 13/122 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L + + G GKTHLLQA ++ V L M A+ +N L Sbjct: 47 LLLFGASGTGKTHLLQASCQTVVRSGRQAHFVPLG----MADLDPAMLEN--------LE 94 Query: 259 NIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +DL+ IDD+Q + G + L N L + + ++ A D P L P + SRL Sbjct: 95 QMDLVAIDDIQCIVGDPAWERALFDLFNRLREQGRSLLGATDAAPDSLPFSLPDLASRLL 154 Query: 318 GG 319 G Sbjct: 155 WG 156 >gi|146312625|ref|YP_001177699.1| DNA replication initiation factor [Enterobacter sp. 638] gi|145319501|gb|ABP61648.1| regulatory inactivation of DnaA Hda protein [Enterobacter sp. 638] Length = 197 Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust. Identities = 35/135 (25%), Positives = 65/135 (48%), Gaps = 20/135 (14%) Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 D GY ++I + G G++HLL A A A + ++ + V Y+ + W + Sbjct: 5 DHSGY-------IYIWSREGAGRSHLLHA-ACAELSQRGDA-VGYVPLDKRTWFVPEVL- 54 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAK-QVVAAADRPPSE 304 D + ++ L+ ID+++ + G + + +L N +L+S K +++ DRPP + Sbjct: 55 --------DGMEHLSLVCIDNIECIAGDEQWEMAMFNLYNRILESGKTRLLITGDRPPRQ 106 Query: 305 LESLDPRIRSRLQGG 319 L P + SRL G Sbjct: 107 LNLGLPDLASRLDWG 121 >gi|331003530|ref|ZP_08327027.1| hypothetical protein HMPREF0491_01889 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412371|gb|EGG91762.1| hypothetical protein HMPREF0491_01889 [Lachnospiraceae oral taxon 107 str. F0167] Length = 341 Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 12/146 (8%) Query: 181 QSIAEVD---SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA--- 234 Q+ AE D G R N +F + G+GKT+L IA ++ R V+YL+A Sbjct: 182 QNRAENDIALDSGEENDRKNIIF-SGNTGVGKTYLSNCIAKVALDRY--YSVIYLSAKEL 238 Query: 235 -EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAK 292 E + + L L D + D+L+IDD+ L EF H++N +++ K Sbjct: 239 FEVLVKVKMEKSEEQKYLLLLDGIYESDMLIIDDLGTELSNHFTTTEFFHIINRRINNEK 298 Query: 293 QVVAAADRPPSELESL-DPRIRSRLQ 317 + + + E+ + R+ SR++ Sbjct: 299 STIISTNLSLDEMRDIYSERVTSRIR 324 >gi|226952106|ref|ZP_03822570.1| DnaA family chromosomal replication initiator [Acinetobacter sp. ATCC 27244] gi|294651081|ref|ZP_06728418.1| DnaA-type chromosomal replication initiator [Acinetobacter haemolyticus ATCC 19194] gi|226837162|gb|EEH69545.1| DnaA family chromosomal replication initiator [Acinetobacter sp. ATCC 27244] gi|292823030|gb|EFF81896.1| DnaA-type chromosomal replication initiator [Acinetobacter haemolyticus ATCC 19194] Length = 232 Score = 38.5 bits (88), Expect = 2.6, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 62/126 (49%), Gaps = 17/126 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIK-RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 L+I+ G GK+HLL AI ++ ++ +P ++V L A+ D + +L Sbjct: 42 LYIYGGAGTGKSHLLSAICDSYLELGRPAIKVSLL-----------ALLD-APIEAITAL 89 Query: 258 RNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 DL+ +DD+ + G Q HL+N + Q+V ++ P EL+ P ++SRL Sbjct: 90 EFYDLVALDDIDAISGVPHWQKAVFHLMN---NHEGQLVFSSRVAPIELKLELPDLQSRL 146 Query: 317 QGGVSV 322 VSV Sbjct: 147 TQAVSV 152 >gi|312984109|ref|ZP_07791456.1| primosome component (helicase loader) [Lactobacillus crispatus CTV-05] gi|310894463|gb|EFQ43538.1| primosome component (helicase loader) [Lactobacillus crispatus CTV-05] Length = 302 Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + + VV+L F+ +S DN L+D +R Sbjct: 153 LYLSGDFGIGKTYMLAGLAN-YVATNFDRNVVFLHVPTFIAGLSSHFGDNS---LQDEIR 208 Query: 259 NI---DLLLIDDM 268 N+ D+L++DD+ Sbjct: 209 NLAECDILILDDI 221 >gi|145641119|ref|ZP_01796700.1| hypothetical protein CGSHiR3021_08616 [Haemophilus influenzae R3021] gi|145274280|gb|EDK14145.1| hypothetical protein CGSHiR3021_08616 [Haemophilus influenzae 22.4-21] Length = 113 Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 13/116 (11%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GKTHLL+A +N + Q V L+ + F++A+ +N L +L+ + Sbjct: 5 GSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LEQQELVCL 53 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGG 319 DD+Q + G + L N + S K ++ +AD+ PS L P + SRL G Sbjct: 54 DDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWG 109 >gi|54295630|ref|YP_128045.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens] gi|53755462|emb|CAH16958.1| hypothetical protein lpl2717 [Legionella pneumophila str. Lens] gi|307611672|emb|CBX01364.1| hypothetical protein LPW_30571 [Legionella pneumophila 130b] Length = 230 Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G GK+HLLQA A Q +YL + +I + L Sbjct: 44 LYLWGPKGSGKSHLLQACCQAINLTQS---AIYLPLAFLKEWGPQSI---------EGLE 91 Query: 259 NIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 + L+ IDD+ + E HL N + DS + ++ + ++PP + + +RSRL Sbjct: 92 DQTLICIDDINTIANDSTWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRL 151 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 G+ + L + + + + LK R A E P+ Sbjct: 152 SWGLVIQLNELNDDEKINTLKMRAAKRGFELPE 184 >gi|153940258|ref|YP_001392964.1| DNA replication protein DnaC [Clostridium botulinum F str. Langeland] gi|152936154|gb|ABS41652.1| putative DNA replication protein DnaC [Clostridium botulinum F str. Langeland] gi|295320941|gb|ADG01319.1| putative DNA replication protein DnaC [Clostridium botulinum F str. 230613] Length = 325 Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 20/175 (11%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDS------HGYTTVRLNPLFIHASVGLGKTHLL 213 S F F F ++ + T ++I ++ + + + N +FI + G GKT L Sbjct: 142 SNFNFEYFTNEKTDFHSDTPRKNIEKILNKMWHFIENFDKIDENFMFI-GTPGTGKTFLS 200 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM----- 268 IA + R VVY TA+ + S I+ + +++D L N DLL+IDD+ Sbjct: 201 NCIAKELLDRGN--FVVYRTADELIQNLRS-IKFSNDKHVEDILINCDLLIIDDLGTESI 257 Query: 269 -QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +F + +L F + LL K ++++ + L+S RI SRL G ++ Sbjct: 258 NEFSKVEL----FNFINKKLLMRKKMIISSNYSIETILKSYSERISSRLLGNFTL 308 >gi|170755548|ref|YP_001783245.1| DNA replication protein DnaC [Clostridium botulinum B1 str. Okra] gi|169120760|gb|ACA44596.1| dnaC family protein [Clostridium botulinum B1 str. Okra] Length = 325 Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 81/175 (46%), Gaps = 20/175 (11%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDS------HGYTTVRLNPLFIHASVGLGKTHLL 213 S F F F ++ + T ++I ++ + + + N +FI + G GKT L Sbjct: 142 SNFNFEYFTNEKTDFHSDTPRKNIEKILNKMWHFIENFDKIDENFMFI-GTPGTGKTFLS 200 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM----- 268 IA + R VVY TA+ + S I+ + +++D L N DLL+IDD+ Sbjct: 201 NCIAKELLDRGN--FVVYRTADELIQNLRS-IKFSNDKHVEDILINCDLLIIDDLGTESI 257 Query: 269 -QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +F + +L F + LL K ++++ + L+S RI SRL G ++ Sbjct: 258 NEFSKVEL----FNFINKKLLMRKKMIISSNYSIETILKSYSERISSRLLGNFTL 308 >gi|66394885|ref|YP_239783.1| ORF015 [Staphylococcus phage 85] gi|62635814|gb|AAX90925.1| ORF015 [Staphylococcus phage 85] Length = 259 Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust. Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A QS E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 96 NEKQVHAKQSAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 152 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 153 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 191 >gi|290475625|ref|YP_003468514.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus bovienii SS-2004] gi|289174947|emb|CBJ81748.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus bovienii SS-2004] Length = 221 Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust. Identities = 51/215 (23%), Positives = 98/215 (45%), Gaps = 28/215 (13%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +F++F G + +L AA +A SHG + ++ + G GK+HLL A + A + Sbjct: 6 IFASFFAGENT--SLLAAIKLAISQSHG------SYIYFWSRDGGGKSHLLHA-SCAELS 56 Query: 223 RQPNLRVVYLTAE---YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQH 278 +Q V Y+ + YF+ + D + ++ L+ ID+++ + G + + Sbjct: 57 QQGE-AVGYVPLDKRAYFV------------PEVLDGMEHLSLVCIDNIECIAGDQEWEM 103 Query: 279 EFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 +L N +++ + ++ DRPP ++ P + SRL G L + + L+ Sbjct: 104 AIFNLYNRIVEIGRTCLLITGDRPPRQINLTLPDLASRLDWGQIYKLQPLSDDEKIQALQ 163 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 R + E P+ ++ VL + R + T R LD Sbjct: 164 LRAKLRGFELPE-DVGRFVLKRLDREMQTLFRTLD 197 >gi|118602306|ref|YP_903521.1| regulatory inactivation of DnaA Hda protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567245|gb|ABL02050.1| regulatory inactivation of DnaA Hda protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 224 Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust. Identities = 53/226 (23%), Positives = 100/226 (44%), Gaps = 35/226 (15%) Query: 154 FGSPL--DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 G PL +S+ + S FI G N+ L + S +FI + GKTH Sbjct: 4 LGLPLSLNSKMLLSNFI-GKKNQQVLDFVNQLLTQKSSAV-------VFISGAKSSGKTH 55 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LLQ A +++ Q L V+Y+ I+ + + L ++D + ID++ +L Sbjct: 56 LLQGCAFSALDGQ--LGVIYID-----------IKQELPEGIINDLVSVDWICIDNVDYL 102 Query: 272 QGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 +IQ + L N + + +++ +A P EL L +++RL V L + E Sbjct: 103 --SIIQQQALFDLYNRIKLADTKLIVSAGSLPGELNLL-KDLKTRLSLAVVFTLETLNDE 159 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + I++ ++ D +NI+ +V ++ + + R+L+ N Sbjct: 160 QKILIIERKMT-----DININIDIKVYHYLFKVFS---RDLNDVLN 197 >gi|332638556|ref|ZP_08417419.1| primosomal protein DnaI [Weissella cibaria KACC 11862] Length = 314 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 1/70 (1%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+IH S G+GKTHL+ A+AN + + +V+ + R A ++N + ++++ Sbjct: 165 LYIHGSYGIGKTHLMGAMANELAQEGIPVTLVHFPSFAVEMRSAIGSKENPQDKI-NTIK 223 Query: 259 NIDLLLIDDM 268 + +L++DD+ Sbjct: 224 QVPILVLDDI 233 >gi|256269128|gb|EEU04463.1| Afg2p [Saccharomyces cerevisiae JAY291] Length = 780 Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 14/152 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKDS 256 + +H G GKT LL+ +AN S + + ++Y + +A+RD N A + S Sbjct: 282 ILLHGPPGTGKTMLLRVVANTSNAHVLTINGPSIVSKY-LGETEAALRDIFNEARKYQPS 340 Query: 257 LRNIDLL-------LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + ID + DD ++ +++ L++ + + K VV AA P+ S+D Sbjct: 341 IIFIDEIDSIAPNRANDDSGEVESRVVA-TLLTLMDGMGVAGKVVVIAATNRPN---SVD 396 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 P +R + V +G+ D + RF IL + + Sbjct: 397 PALRRPGRFDQEVEIGIPDVDARFDILTKQFS 428 >gi|311694193|gb|ADP97066.1| DNA replication initiation factor [marine bacterium HP15] Length = 232 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 12/133 (9%) Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GK+HLLQA+ + ++Q V AE + + L +++ +DD Sbjct: 55 GKSHLLQAVCHLG-EKQGRAAVCISIAEL----------EPFGPDALSGLETHEIVCLDD 103 Query: 268 MQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + + G+ + E HL N +LD ++ + P+ L P + SR G+ + LG+ Sbjct: 104 VDRIAGQRVWEEAIFHLYNRILDRGGLLLVSLADLPASLPFELPDLISRFSHGLVIQLGI 163 Query: 327 HDYEMRFSILKNR 339 + E R +IL+ R Sbjct: 164 YRDEDRLTILRAR 176 >gi|295693388|ref|YP_003601998.1| primosomal protein dnai [Lactobacillus crispatus ST1] gi|295031494|emb|CBL50973.1| Primosomal protein DnaI [Lactobacillus crispatus ST1] Length = 302 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + + VV+L F+ +S DN L+D +R Sbjct: 153 LYLSGDFGIGKTYMLAGLAN-YVATNFDRNVVFLHVPTFIAGLSSHFGDNS---LQDEIR 208 Query: 259 NI---DLLLIDDM 268 N+ D+L++DD+ Sbjct: 209 NLAECDVLILDDI 221 >gi|259503614|ref|ZP_05746516.1| primosomal protein DnaI [Lactobacillus antri DSM 16041] gi|259168438|gb|EEW52933.1| primosomal protein DnaI [Lactobacillus antri DSM 16041] Length = 318 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP-LFIHASVGLGKTHLLQAIANASIKRQP 225 + + S N + L A + + + Y+ P L+++ S G+GKT+LL AIAN + +Q Sbjct: 136 YTDDSQNDLRLNAIDAAYQF-TEDYSADHFLPGLYLYGSFGVGKTYLLGAIAN-ELAKQK 193 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 + L F ++I+ N ++++ +L++DD+ Sbjct: 194 GVATTMLHFPSFAVEMRNSIKKNNTSEKLEAVKKAPVLMLDDI 236 >gi|227877041|ref|ZP_03995130.1| primosomal protein DnaI [Lactobacillus crispatus JV-V01] gi|256843645|ref|ZP_05549133.1| primosome component [Lactobacillus crispatus 125-2-CHN] gi|256850111|ref|ZP_05555541.1| primosome component [Lactobacillus crispatus MV-1A-US] gi|262047410|ref|ZP_06020367.1| primosome component [Lactobacillus crispatus MV-3A-US] gi|293381760|ref|ZP_06627737.1| primosomal protein DnaI [Lactobacillus crispatus 214-1] gi|227863359|gb|EEJ70789.1| primosomal protein DnaI [Lactobacillus crispatus JV-V01] gi|256615065|gb|EEU20266.1| primosome component [Lactobacillus crispatus 125-2-CHN] gi|256713083|gb|EEU28074.1| primosome component [Lactobacillus crispatus MV-1A-US] gi|260572384|gb|EEX28947.1| primosome component [Lactobacillus crispatus MV-3A-US] gi|290921680|gb|EFD98705.1| primosomal protein DnaI [Lactobacillus crispatus 214-1] Length = 302 Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 7/73 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + + VV+L F+ +S DN L+D +R Sbjct: 153 LYLSGDFGIGKTYMLAGLAN-YVATNFDRNVVFLHVPTFIAGLSSHFGDNS---LQDEIR 208 Query: 259 NI---DLLLIDDM 268 N+ D+L++DD+ Sbjct: 209 NLAECDVLILDDI 221 >gi|325847962|ref|ZP_08170116.1| hypothetical protein HMPREF9246_2025 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480790|gb|EGC83845.1| hypothetical protein HMPREF9246_2025 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 275 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 17/122 (13%) Query: 153 VFGSPLDSRFVFSTFI--EGSSNRVALTAAQSIAEV--DSHGYTTVRLNPLFIHASVGLG 208 F SP ++ F F+ +G S +VA A++ ++ D+ G L + VG G Sbjct: 73 CFSSPNQHQYTFERFLNEKGQSYKVAYNYAKNFEQMKEDNVG--------LLFYGDVGSG 124 Query: 209 KTHLLQAIANASI-KRQPNLRVVYLTAEYF-MWRFASAIRDNCALNLKDSLRNIDLLLID 266 KT+L +IAN I K Q ++++ L+ + + A + N + +L NI LL++D Sbjct: 125 KTYLACSIANELIEKEQVKVKIMNLSQVINQIQKSAFKVDSN---EIISNLSNIPLLILD 181 Query: 267 DM 268 D+ Sbjct: 182 DL 183 >gi|304318078|ref|YP_003853223.1| ATPase AAA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779580|gb|ADL70139.1| AAA ATPase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 326 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 40/130 (30%), Positives = 64/130 (49%), Gaps = 9/130 (6%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM--WRFASAIRDNCAL-NLKD 255 LF + GLGKT L IA + R V+Y TA + R DN + D Sbjct: 184 LFFYGDSGLGKTFLSNCIAKELLDRGK--VVLYRTAPDLVEGLRLNKLNSDNDSYYEYTD 241 Query: 256 SLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP-RI 312 LR DLL+IDD+ + + +Q F ++N+ L + K+ + + + P SE+ ++ P R+ Sbjct: 242 LLRECDLLIIDDLGTEPITPFSLQEIF-SIVNARLLANKKFIISTNLPLSEVMNIYPERL 300 Query: 313 RSRLQGGVSV 322 SR+ G + Sbjct: 301 CSRILGNFKL 310 >gi|188588854|ref|YP_001922688.1| DNA replication protein DnaC [Clostridium botulinum E3 str. Alaska E43] gi|188499135|gb|ACD52271.1| dnaC family protein [Clostridium botulinum E3 str. Alaska E43] Length = 326 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 +++ +N LF + G GKT+L ++ A + + VVY T++ + S IR N Sbjct: 178 NFSSQNVNLLFF-GNPGSGKTYLSYCLSKAILDK--GYLVVYKTSDELIKNL-SEIRFNN 233 Query: 250 ALNLKDSLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 NL+ L N DLL+IDD+ + L I F + +L+ K +++ P + Sbjct: 234 NHNLESLLLNCDLLIIDDLGAEHLNEFSITELFNIINKRILNKKKMLISTNLTLPGITKQ 293 Query: 308 LDPRIRSRLQG 318 RI SRL G Sbjct: 294 YTERIASRLLG 304 >gi|114706979|ref|ZP_01439878.1| ATPase involved in DNA replication initiation [Fulvimarina pelagi HTCC2506] gi|114537529|gb|EAU40654.1| ATPase involved in DNA replication initiation [Fulvimarina pelagi HTCC2506] Length = 127 Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%) Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 NR + V R VAMY++ ++ S G FG RD T++ HAVR++E Sbjct: 44 NRSLAPVCEARHVAMYIAHVVFQVSLIRSGMAFG-RDRTSIAHAVRRIE 91 >gi|126651395|ref|ZP_01723602.1| primosomal protein DnaI [Bacillus sp. B14905] gi|126591924|gb|EAZ86007.1| primosomal protein DnaI [Bacillus sp. B14905] Length = 289 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 51/97 (52%), Gaps = 10/97 (10%) Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN--ASIKRQPNLRVVYL 232 +A AAQ + G+ + +++ G+GK+ +L A+AN ASIK +R V + Sbjct: 121 IAQKAAQFVKATKESGHLPSK--GFYLYGKFGVGKSFVLGALANELASIK----IRSVVV 174 Query: 233 TAEYFMWRFASAIRDNCALNLK-DSLRNIDLLLIDDM 268 F+ +AI DN LN K D ++ +L++DD+ Sbjct: 175 FVPEFLREMKNAIGDN-TLNEKIDYIKKAPVLMLDDL 210 >gi|52842998|ref|YP_096797.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630109|gb|AAU28850.1| DnaA-like family protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 245 Score = 38.1 bits (87), Expect = 3.3, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 14/145 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G GK+HLLQA A Q +YL + +I + L Sbjct: 59 LYLWGPKGSGKSHLLQACCQAINLTQS---AIYLPLAFLKEWGPQSI---------EGLE 106 Query: 259 NIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 + L+ IDD+ + E HL N + DS + ++ + ++PP + + +RSRL Sbjct: 107 DQTLICIDDINTIANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRL 166 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLA 341 G+ + L + + + + LK R A Sbjct: 167 SWGLVIQLNELNDDEKINTLKMRAA 191 >gi|296165981|ref|ZP_06848436.1| transposition helper protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898665|gb|EFG78216.1| transposition helper protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 259 Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust. Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%) Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 I ++ + G+ +PL + G GK+HLL IA ++ + RV Y A + Sbjct: 97 IGQLATCGWVKAG-HPLCLIGDSGTGKSHLL--IALGTLAAESGYRVRYTLASKLVNELV 153 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 A D L +DL+L+D++ +LQ Sbjct: 154 EAADDKQLTKLIGRYGRVDLILVDELGYLQ 183 >gi|154503751|ref|ZP_02040811.1| hypothetical protein RUMGNA_01575 [Ruminococcus gnavus ATCC 29149] gi|153795851|gb|EDN78271.1| hypothetical protein RUMGNA_01575 [Ruminococcus gnavus ATCC 29149] Length = 332 Score = 38.1 bits (87), Expect = 3.4, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 10/104 (9%) Query: 170 GSSNRVALTAAQSIAE--VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 G S+R + A I V S G LF++ VG+GKT L IA + ++ + Sbjct: 158 GRSSRQVIEDALRICRNFVTSFG---TDFQNLFLYGDVGVGKTFLSNCIAKELMDKEYS- 213 Query: 228 RVVYLTAEYF---MWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 V+Y +A F + + A +D A N+ + + N D L+IDD+ Sbjct: 214 -VLYFSASKFFSSLAKHAFDKQDVDAQNMFELIYNCDCLIIDDL 256 >gi|154483289|ref|ZP_02025737.1| hypothetical protein EUBVEN_00990 [Eubacterium ventriosum ATCC 27560] gi|149735799|gb|EDM51685.1| hypothetical protein EUBVEN_00990 [Eubacterium ventriosum ATCC 27560] Length = 330 Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust. Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 21/173 (12%) Query: 175 VALTAAQSIAEVDSHGYTTVR-----LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 ++AA++I V H + + + L + G GKT L+ IA I++ + V Sbjct: 157 TGISAAENIDAVVDHCHYFINNFDKTFDNLLFYGRAGTGKTFLINCIAKELIEK--SYSV 214 Query: 230 VYLTA--------EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF-LQGKLIQHEF 280 +YL+A +Y R + I + D L DLL+IDD+ + + Sbjct: 215 IYLSAVQLFDLLADYSFKRSNTTIYRQISF---DELLRCDLLIIDDLGTEMSNSFTESSL 271 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELES-LDPRIRSRLQGGVSVPLGLHDYEMR 332 LN L K + + + EL+ + RI SR G + PL + ++R Sbjct: 272 FDCLNERLIHQKSTIISTNFSLQELQQKYEERIFSRTAGNYT-PLKIFGDDIR 323 >gi|148361114|ref|YP_001252321.1| DnaA-like family transporter protein [Legionella pneumophila str. Corby] gi|296108445|ref|YP_003620146.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy] gi|148282887|gb|ABQ56975.1| DnaA-like family protein [Legionella pneumophila str. Corby] gi|295650347|gb|ADG26194.1| DnaA-like family protein [Legionella pneumophila 2300/99 Alcoy] Length = 230 Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G GK+HLLQA A Q +YL + +I + L Sbjct: 44 LYLWGPKGSGKSHLLQACCQAINLTQS---AIYLPLAFLKEWGPQSI---------EGLE 91 Query: 259 NIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 + L+ IDD+ + E HL N + DS + ++ + ++PP + + +RSRL Sbjct: 92 DQTLICIDDINTIANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRL 151 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 G+ + L + + + + LK R A E P+ Sbjct: 152 SWGLVIQLNELNDDEKINTLKMRAAKRGFELPE 184 >gi|327409439|ref|YP_004301581.1| gp47 [Brochothrix phage BL3] gi|296245515|gb|ADH03128.1| gp47 [Brochothrix phage BL3] Length = 258 Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 54/128 (42%), Gaps = 18/128 (14%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV--RLNP--LFIHASVGLGKT 210 GS + R +TF N V+ AQ + Y + + P LF+ + G GK+ Sbjct: 61 GSYISERLKEATF----DNYVSENKAQEKIRLTCKRYVEIFDKKKPMNLFLTGNYGTGKS 116 Query: 211 HLLQAIANA-SIKRQPNLRVVYLTAEY---------FMWRFASAIRDNCALNLKDSLRNI 260 HL AI S K++ N + EY + S DN +S++N+ Sbjct: 117 HLAAAIHQELSSKKKMNNETLVDQYEYKSLFINLPDLVDELTSGYADNSRREKFESIKNV 176 Query: 261 DLLLIDDM 268 DLL+IDD Sbjct: 177 DLLIIDDF 184 >gi|54298784|ref|YP_125153.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris] gi|53752569|emb|CAH14001.1| hypothetical protein lpp2848 [Legionella pneumophila str. Paris] Length = 230 Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust. Identities = 39/153 (25%), Positives = 67/153 (43%), Gaps = 14/153 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G GK+HLLQA A Q +YL + +I + L Sbjct: 44 LYLWGPKGSGKSHLLQACCQAINLTQS---AIYLPLAFLKEWGPQSI---------EGLE 91 Query: 259 NIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRL 316 + L+ IDD+ + E HL N + DS + ++ + ++PP + + +RSRL Sbjct: 92 DQTLICIDDINTIANDSAWEEALFHLYNKIKDSERSLLIISGNQPPIKCDIKLADLRSRL 151 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 G+ + L + + + + LK R A E P+ Sbjct: 152 SWGLVIQLNELNDDEKINTLKMRAAKRGFELPE 184 >gi|284024180|ref|ZP_06378578.1| hypothetical protein Saura13_06294 [Staphylococcus aureus subsp. aureus 132] gi|295407524|ref|ZP_06817318.1| hypothetical protein SMAG_02694 [Staphylococcus aureus A8819] gi|297246783|ref|ZP_06930594.1| hypothetical protein SLAG_02830 [Staphylococcus aureus A8796] gi|294967633|gb|EFG43668.1| hypothetical protein SMAG_02694 [Staphylococcus aureus A8819] gi|297176363|gb|EFH35637.1| hypothetical protein SLAG_02830 [Staphylococcus aureus A8796] Length = 259 Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 96 NEKQVKAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKSKGHT-VAFM 152 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 153 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 191 >gi|317129896|ref|YP_004096178.1| Primosomal DnaI domain protein [Bacillus cellulosilyticus DSM 2522] gi|315474844|gb|ADU31447.1| Primosomal DnaI domain protein [Bacillus cellulosilyticus DSM 2522] Length = 311 Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ G+GKT L+ AIAN R+ + +VY A F + I D + D ++ Sbjct: 162 LYVYGPFGVGKTFLMGAIANELADREVSTLIVY--APDFFRELKNGISDGSYQSKLDEVK 219 Query: 259 NIDLLLIDDM 268 +L++DD+ Sbjct: 220 QAPVLILDDI 229 >gi|283771004|ref|ZP_06343895.1| replicative DNA helicase [Staphylococcus aureus subsp. aureus H19] gi|283459598|gb|EFC06689.1| replicative DNA helicase [Staphylococcus aureus subsp. aureus H19] Length = 259 Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 5/82 (6%) Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 G++T L + S G GK+HL AIA A +K + + V ++ M R + N Sbjct: 112 GFSTKEAKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFMHIPMLMDRIKATYNKNA 169 Query: 250 ALNLKDSLR---NIDLLLIDDM 268 + +R +IDLL++DDM Sbjct: 170 VETTDELVRLLSDIDLLVLDDM 191 >gi|251778022|ref|ZP_04820942.1| dnaC family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082337|gb|EES48227.1| dnaC family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 327 Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust. Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 6/131 (4%) Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 +++ +N LF + G GKT+L ++ A + + VVY T++ + S IR N Sbjct: 178 NFSSQNVNLLFF-GNPGSGKTYLSYCLSKAILDK--GYLVVYKTSDELIKNL-SEIRFNN 233 Query: 250 ALNLKDSLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 NL+ L N DLL+IDD+ + L I F + +L+ K +++ P + Sbjct: 234 NHNLESLLLNCDLLIIDDLGAEHLNEFSITELFNIINKRILNKKKMLISTNLTLPGITKQ 293 Query: 308 LDPRIRSRLQG 318 RI SRL G Sbjct: 294 YTERIASRLLG 304 >gi|67459812|ref|YP_247435.1| hypothetical protein RF_p19 [Rickettsia felis URRWXCal2] gi|67005345|gb|AAY62270.1| unknown [Rickettsia felis URRWXCal2] Length = 396 Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust. Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 3/92 (3%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLK 82 +D+ K N +++ + L+ ++G + +WF + + + ++ L++PT F+ Sbjct: 306 LDIGKELDATNKNTVWHQIRKGLRKELGEHIDQAWFAKAEAKECRNTGLLTLTMPTRFMA 365 Query: 83 AWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 W++N Y I +L E I+ VE +R + Sbjct: 366 DWVRNNYSHVIRRL--SEGYGIKRVEYGMRDI 395 >gi|62181201|ref|YP_217618.1| putative replication protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128834|gb|AAX66537.1| Gifsy-1 prophage DnaC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715689|gb|EFZ07260.1| putative replication protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 249 Score = 38.1 bits (87), Expect = 3.8, Method: Compositional matrix adjust. Identities = 54/208 (25%), Positives = 85/208 (40%), Gaps = 24/208 (11%) Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTF-IEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 S++ I G+ I L F+ + + G R A T A+S A+ G+ + Sbjct: 54 SRTEKIFGRSGIQD-----LHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGFAS---- 104 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN-CALNLKDS 256 +G GK HL AI N + ++ VV T M R +L D Sbjct: 105 -FVFSGGLGTGKNHLAAAIGNHLLAGGHSVLVV--TIPDLMLRVRECYDGGQSEASLLDD 161 Query: 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLD---SAKQVVAAADRPPSE--LESLDPR 311 L +DLL++D++ +G + +LN ++D S+ + V E L+SL R Sbjct: 162 LCKVDLLVLDEVGIQRGSSGEKV---ILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGAR 218 Query: 312 IRSRLQ--GGVSVPLGLHDYEMRFSILK 337 + RLQ GG+ V Y S L+ Sbjct: 219 VIDRLQMDGGMWVNFDWGSYRKNVSHLR 246 >gi|116333674|ref|YP_795201.1| primosomal protein DnaI [Lactobacillus brevis ATCC 367] gi|116099021|gb|ABJ64170.1| Replicative DNA helicase loader DnaI [Lactobacillus brevis ATCC 367] Length = 308 Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R L++ S G+GKT+LL A+AN + +V+ + F +AI N Sbjct: 156 RHQALYLSGSFGVGKTYLLAAVANQLAADGFSTTLVHFPS--FAVEMKNAIAQNGVAEKL 213 Query: 255 DSLRNIDLLLIDDM 268 D+L+ +L+IDD+ Sbjct: 214 DALKKAKVLMIDDI 227 >gi|254503922|ref|ZP_05116073.1| hypothetical protein SADFL11_3961 [Labrenzia alexandrii DFL-11] gi|222439993|gb|EEE46672.1| hypothetical protein SADFL11_3961 [Labrenzia alexandrii DFL-11] Length = 89 Score = 37.7 bits (86), Expect = 3.9, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%) Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI--TL 489 NR + V RQ+ MYL+ + S +GRR+ RD +T HA +K+E M E L Sbjct: 7 NRGPKHVSDARQLMMYLAHVEFGLSLAVVGRRYF-RDRSTASHACKKIEIMREDPFFDEL 65 Query: 490 KKEVELLKRL 499 E+E L L Sbjct: 66 VSEIEALITL 75 >gi|315634909|ref|ZP_07890191.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393] gi|315476461|gb|EFU67211.1| DnaA regulatory inactivator Hda [Aggregatibacter segnis ATCC 33393] Length = 234 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 15/124 (12%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQ-PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 ++ GK+HLL+AI + + Q P L V A+YF + A+ +N L Sbjct: 47 FYLWGQRSCGKSHLLKAICHHYLTHQRPALYVPLNKAQYF----SPAVLEN--------L 94 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQV-VAAADRPPSELESLDPRIRSR 315 +L+ +DD+Q + G + L+N + ++ K + V +AD+ P+ L + P + SR Sbjct: 95 EQQELVCLDDLQEVIGNPDWELAIFDLINRIRETGKTLLVISADQSPTNLSAHLPDLASR 154 Query: 316 LQGG 319 L G Sbjct: 155 LTWG 158 >gi|227904457|ref|ZP_04022262.1| primosomal protein DnaI [Lactobacillus acidophilus ATCC 4796] gi|227867832|gb|EEJ75253.1| primosomal protein DnaI [Lactobacillus acidophilus ATCC 4796] Length = 305 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + VV+L F+ AS DN L+D +R Sbjct: 156 LYLSGDFGVGKTYILAGLANYVVTNMEK-DVVFLHVPTFIAGLASHFGDNS---LQDEIR 211 Query: 259 NI---DLLLIDDM 268 + DLL++DD+ Sbjct: 212 RLSECDLLILDDI 224 >gi|116235531|gb|ABJ88866.1| conserved DnaC-like protein [Staphylococcus phage 80] Length = 259 Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 96 NEKQVQAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 152 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 153 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 191 >gi|111023934|ref|YP_706906.1| insertion sequence ATP-binding protein [Rhodococcus jostii RHA1] gi|110823464|gb|ABG98748.1| possible insertion sequence ATP-binding protein [Rhodococcus jostii RHA1] Length = 167 Score = 37.7 bits (86), Expect = 4.0, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 63/121 (52%), Gaps = 5/121 (4%) Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 T +R++ L + S G GK+H ++A+A+A+I + +LRV++ T E A D Sbjct: 12 TLMRVDELPLITS-GTGKSHFVEALAHAAI--EADLRVLWFTLETLTQTVNKAKADGSVA 68 Query: 252 NLKDSLRNIDLLLIDDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + + DL+++DD+ L G+ F ++++ + + V ++ PS +++ P Sbjct: 69 RTVAKVCSCDLVVVDDIGMLPAGQDAAEAFYRIVDAAYER-RSVAVTSNIHPSGFDTIMP 127 Query: 311 R 311 + Sbjct: 128 K 128 >gi|58337808|ref|YP_194393.1| primosomal protein DnaI [Lactobacillus acidophilus NCFM] gi|58255125|gb|AAV43362.1| primosome component (helicase loader) [Lactobacillus acidophilus NCFM] Length = 302 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT++L +AN + VV+L F+ AS DN L+D +R Sbjct: 153 LYLSGDFGVGKTYILAGLANYVVTNMEK-DVVFLHVPTFIAGLASHFGDNS---LQDEIR 208 Query: 259 NI---DLLLIDDM 268 + DLL++DD+ Sbjct: 209 RLSECDLLILDDI 221 >gi|148262868|ref|YP_001229574.1| hypothetical protein Gura_0793 [Geobacter uraniireducens Rf4] gi|146396368|gb|ABQ25001.1| protein of unknown function DUF1568 [Geobacter uraniireducens Rf4] Length = 314 Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust. Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%) Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 RQV +YL + EIG RF RD T + A R++ + +ETD L ++VE +K Sbjct: 252 RQVCIYLCHKYSGMRLQEIGDRFNVRD-TAISEASRRLVRKMETDEVLGRKVEKIK 306 >gi|313884815|ref|ZP_07818567.1| primosomal protein DnaI [Eremococcus coleocola ACS-139-V-Col8] gi|312619506|gb|EFR30943.1| primosomal protein DnaI [Eremococcus coleocola ACS-139-V-Col8] Length = 309 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%) Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 V+++ L L++ G+GKT++ A+AN ++ ++ +++ F+ AI Sbjct: 147 VEAYEAGQTGLQGLYVSGPFGVGKTYIFGALANRLVESHHSVTMIHYPT--FVQDMKEAI 204 Query: 246 RDNCALNLKDSLRNIDLLLIDDM 268 +L D ++ +D+L IDD+ Sbjct: 205 NTKNVQSLLDRVKQVDVLFIDDI 227 >gi|182626508|ref|ZP_02954258.1| putative DNA replication protein DnaC [Clostridium perfringens D str. JGS1721] gi|177908194|gb|EDT70758.1| putative DNA replication protein DnaC [Clostridium perfringens D str. JGS1721] Length = 331 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N LF + S G GKT L IA + VVY T++ + R IR N L+D Sbjct: 184 NILF-YGSPGTGKTFLTYCIAKELLDN--GFLVVYRTSDELI-RNLREIRFNNDHELEDL 239 Query: 257 LRNIDLLLIDDMQFLQ-GKLIQHEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRS 314 L N DLL+IDD+ Q E LLN +L + K +++ P ++ RI S Sbjct: 240 LINCDLLVIDDLGAEQITDFSTTELFTLLNKKILLNKKMIISTNLNLPELKQAYAERITS 299 Query: 315 RLQGG 319 RL G Sbjct: 300 RLLGN 304 >gi|168217383|ref|ZP_02643008.1| putative DNA replication protein DnaC [Clostridium perfringens NCTC 8239] gi|182380565|gb|EDT78044.1| putative DNA replication protein DnaC [Clostridium perfringens NCTC 8239] Length = 331 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N LF + S G GKT L IA + VVY T++ + R IR N L+D Sbjct: 184 NILF-YGSPGTGKTFLTYCIAKELLDN--GFLVVYRTSDELI-RNLREIRFNNDHELEDL 239 Query: 257 LRNIDLLLIDDMQFLQ-GKLIQHEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRS 314 L N DLL+IDD+ Q E LLN +L + K +++ P ++ RI S Sbjct: 240 LINCDLLVIDDLGAEQITDFSTTELFTLLNKKILLNKKMIISTNLNLPELKQAYAERITS 299 Query: 315 RLQGG 319 RL G Sbjct: 300 RLLGN 304 >gi|169342278|ref|ZP_02628448.2| putative DNA replication protein DnaC [Clostridium perfringens C str. JGS1495] gi|169299659|gb|EDS81717.1| putative DNA replication protein DnaC [Clostridium perfringens C str. JGS1495] Length = 331 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N LF + S G GKT L IA + VVY T++ + R IR N L+D Sbjct: 184 NILF-YGSPGTGKTFLTYCIAKELLDN--GFLVVYRTSDELI-RNLREIRFNNDHELEDL 239 Query: 257 LRNIDLLLIDDMQFLQ-GKLIQHEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRS 314 L N DLL+IDD+ Q E LLN +L + K +++ P ++ RI S Sbjct: 240 LINCDLLVIDDLGAEQITDFSTTELFTLLNKKILLNKKMIISTNLNLPELKQAYAERITS 299 Query: 315 RLQGG 319 RL G Sbjct: 300 RLLGN 304 >gi|219872144|ref|YP_002476519.1| DNA replication initiation factor [Haemophilus parasuis SH0165] gi|219692348|gb|ACL33571.1| DNA replication initiation factor/chromosomal replication initiator DnaA [Haemophilus parasuis SH0165] Length = 246 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 20/148 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I GK+HLL+A++N + Q + + L ++ FA + DN Sbjct: 52 FYIWGGKSSGKSHLLKAVSNHYLLNQQSATYIPLDKSHY---FAPTVLDNG--------D 100 Query: 259 NIDLLLIDDMQFLQG-KLIQHEFCHLLN------SLLDSAKQ--VVAAADRPPSELESLD 309 +D++ +DD+Q + G + + L N L + K+ ++ +AD PP +L Sbjct: 101 QLDVVCLDDIQAVAGDEEWELAIFDLFNQIREQQGLFNQGKKTLLLISADCPPHQLAIHL 160 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILK 337 P +RSRL G L D E + IL+ Sbjct: 161 PDLRSRLTWGEVYRLADLDDEQKRIILQ 188 >gi|163847144|ref|YP_001635188.1| IstB ATP binding domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524981|ref|YP_002569452.1| IstB domain-containing protein ATP-binding protein [Chloroflexus sp. Y-400-fl] gi|163668433|gb|ABY34799.1| IstB domain protein ATP-binding protein [Chloroflexus aurantiacus J-10-fl] gi|222448860|gb|ACM53126.1| IstB domain protein ATP-binding protein [Chloroflexus sp. Y-400-fl] Length = 229 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 19/127 (14%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL- 257 L + G GKTHL AIAN ++ R + V++ + S N + Sbjct: 71 LVLFGGYGCGKTHLAAAIANEALDR--HTPVLFTVVPDLLDHLRSTFGPNSETAYDERFE 128 Query: 258 --RNIDLLLIDDM------QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 R++ LL++DD+ + + KL Q ++N + A V ++R P + +D Sbjct: 129 LVRDVPLLILDDLGTENTTPWAREKLYQ-----IMNHRYNYALPTVITSNRDPKD---ID 180 Query: 310 PRIRSRL 316 PRI SR+ Sbjct: 181 PRILSRM 187 >gi|18311595|ref|NP_563529.1| DNA replication protein DnaC [Clostridium perfringens str. 13] gi|18146279|dbj|BAB82319.1| probable chromosome replication initiation protein [Clostridium perfringens str. 13] Length = 331 Score = 37.7 bits (86), Expect = 4.2, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N LF + S G GKT L IA + VVY T++ + R IR N L+D Sbjct: 184 NILF-YGSPGTGKTFLTYCIAKELLDN--GFLVVYRTSDELI-RNLREIRFNNDHELEDL 239 Query: 257 LRNIDLLLIDDMQFLQ-GKLIQHEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRS 314 L N DLL+IDD+ Q E LLN +L + K +++ P ++ RI S Sbjct: 240 LINCDLLVIDDLGAEQITDFSTTELFTLLNKKILLNKKMIISTNLNLPELKQAYAERITS 299 Query: 315 RLQGG 319 RL G Sbjct: 300 RLLGN 304 >gi|167854501|ref|ZP_02477282.1| hypothetical protein HPS_01939 [Haemophilus parasuis 29755] gi|167854256|gb|EDS25489.1| hypothetical protein HPS_01939 [Haemophilus parasuis 29755] Length = 236 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 20/148 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 +I GK+HLL+A++N + Q + + L ++ FA + DN Sbjct: 42 FYIWGGKSSGKSHLLKAVSNHYLLNQQSATYIPLDKSHY---FAPTVLDNG--------D 90 Query: 259 NIDLLLIDDMQFLQG-KLIQHEFCHLLN------SLLDSAKQ--VVAAADRPPSELESLD 309 +D++ +DD+Q + G + + L N L + K+ ++ +AD PP +L Sbjct: 91 QLDVVCLDDIQAVAGDEEWELAIFDLFNQIREQQGLFNQGKKTLLLISADCPPHQLAIHL 150 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILK 337 P +RSRL G L D E + IL+ Sbjct: 151 PDLRSRLTWGEVYRLADLDDEQKRIILQ 178 >gi|332653728|ref|ZP_08419472.1| putative DNA replication protein DnaC [Ruminococcaceae bacterium D16] gi|332516814|gb|EGJ46419.1| putative DNA replication protein DnaC [Ruminococcaceae bacterium D16] Length = 334 Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust. Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 10/128 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI--RDNCALN-LKD 255 LF+ + GLGKT L IA S+ Q VVY TA +F + RD + +D Sbjct: 189 LFLTGAPGLGKTFLSACIAR-SVSEQ-GFSVVYDTAGNIFSQFETRKFQRDTQGVQEARD 246 Query: 256 SLR---NIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSE-LESLDP 310 R DLL++DD+ L + +Q LLN+ L K V +++ E P Sbjct: 247 ETRRYLTCDLLILDDLGSELTTQFVQSALYELLNTRLVGEKHTVISSNLTMEEAARRYSP 306 Query: 311 RIRSRLQG 318 +I SRL G Sbjct: 307 QIASRLMG 314 >gi|108802897|ref|YP_642834.1| hypothetical protein Rxyl_0041 [Rubrobacter xylanophilus DSM 9941] gi|108764140|gb|ABG03022.1| IstB-like ATP-binding protein [Rubrobacter xylanophilus DSM 9941] Length = 241 Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust. Identities = 33/117 (28%), Positives = 59/117 (50%), Gaps = 11/117 (9%) Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSH--GYTTVRLNP--LFIHASVGLGKTHLLQA 215 SR + + G + V+ AA+++ +V+++ G+ R L+ VG GKTHL A Sbjct: 54 SRRMKGYTLSGFNPYVSPAAAKALEKVEAYLKGWEENREQGRGLYFCGGVGTGKTHLAVA 113 Query: 216 IANASIKRQ--PNLRVVYLTAEYFMWRFASAIRDNCA--LNLKDSLRNIDLLLIDDM 268 + N I+R+ P+L ++T + A D D+++N +LLL+DD+ Sbjct: 114 VMNELIQRRRVPSL---FVTVPELLDNLRGAYNDPGRDLDEWMDAVKNAELLLLDDL 167 >gi|94498172|ref|ZP_01304734.1| transposition helper protein [Sphingomonas sp. SKA58] gi|94422452|gb|EAT07491.1| transposition helper protein [Sphingomonas sp. SKA58] Length = 223 Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 13/110 (11%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L + G GKTH + AI +A I RV++ + + + SA RD + D L Sbjct: 63 LLLFGQSGTGKTHAVAAIGHALI--DTGRRVLFCSTTDMVQKLQSARRDLSLPAMLDKLD 120 Query: 259 NIDLLLIDDMQFLQG---------KLIQHEFCHLLNSLLDSAKQVVAAAD 299 DL+++DD+ +++ +LI H + +SL +A Q +A D Sbjct: 121 KFDLIVLDDLSYVRKDQVETSALFELIAHRYER--HSLAITANQPFSAWD 168 >gi|94495102|ref|ZP_01301683.1| transposase [Sphingomonas sp. SKA58] gi|94425368|gb|EAT10388.1| transposase [Sphingomonas sp. SKA58] Length = 269 Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 13/110 (11%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L + G GKTH + AI +A I RV++ + + + SA RD + D L Sbjct: 109 LLLFGQSGTGKTHAVAAIGHALI--DTGRRVLFCSTTDMVQKLQSARRDLSLPAMLDKLD 166 Query: 259 NIDLLLIDDMQFLQG---------KLIQHEFCHLLNSLLDSAKQVVAAAD 299 DL+++DD+ +++ +LI H + +SL +A Q +A D Sbjct: 167 KFDLIVLDDLSYVRKDQVETSALFELIAHRYER--HSLAITANQPFSAWD 214 >gi|110800140|ref|YP_697304.1| DNA replication protein DnaC [Clostridium perfringens ATCC 13124] gi|168209856|ref|ZP_02635481.1| putative DNA replication protein DnaC [Clostridium perfringens B str. ATCC 3626] gi|168214928|ref|ZP_02640553.1| putative DNA replication protein DnaC [Clostridium perfringens CPE str. F4969] gi|110674787|gb|ABG83774.1| putative DNA replication protein DnaC [Clostridium perfringens ATCC 13124] gi|170712049|gb|EDT24231.1| putative DNA replication protein DnaC [Clostridium perfringens B str. ATCC 3626] gi|170713636|gb|EDT25818.1| putative DNA replication protein DnaC [Clostridium perfringens CPE str. F4969] Length = 331 Score = 37.7 bits (86), Expect = 4.5, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N LF + S G GKT L IA + VVY T++ + R IR N L+D Sbjct: 184 NILF-YGSPGTGKTFLTYCIAKELL--DNGFLVVYRTSDELI-RNLREIRFNNDHELEDL 239 Query: 257 LRNIDLLLIDDMQFLQ-GKLIQHEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRS 314 L N DLL+IDD+ Q E LLN +L + K +++ P ++ RI S Sbjct: 240 LINCDLLVIDDLGAEQITDFSTTELFTLLNKKILLNKKMIISTNLNLPELKQAYAERITS 299 Query: 315 RLQGG 319 RL G Sbjct: 300 RLLGN 304 >gi|239946564|ref|ZP_04698318.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] gi|239920840|gb|EER20865.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes scapularis] Length = 821 Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust. Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Query: 25 DVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKA 83 DVD +N + + + RL+ ++G + +WF + NI+ +++PT F+ Sbjct: 734 DVDT----INENTSWHQIRKRLRTELGEAIDTAWFSKAVVKECKETNILTITMPTRFMAD 789 Query: 84 WIKNRYLETITKL 96 WI+N Y + I +L Sbjct: 790 WIRNNYSQMIRRL 802 >gi|50365396|ref|YP_053821.1| chromosomal replication initiator protein [Mesoplasma florum L1] gi|50363952|gb|AAT75937.1| chromosomal replication initiator protein [Mesoplasma florum L1] Length = 311 Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust. Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 9/100 (9%) Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 +S ++ + + I +D + +++H + G+GKT +L+ +AN + KR +V Sbjct: 138 NSGKLVVDYIKDIKNIDR-----TNIKGVYLHGNPGIGKTTMLKTLANEAAKRDA--KVF 190 Query: 231 YLTAEYFMWRFASAI--RDNCALNLKDSLRNIDLLLIDDM 268 + TA + + N ++ D ++ D+L IDD Sbjct: 191 FCTAPDIIEKCKEQFSKNSNSSIPYIDQMKKADILFIDDF 230 >gi|90422127|ref|YP_530497.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90422520|ref|YP_530890.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90424553|ref|YP_532923.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90425963|ref|YP_534333.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90104141|gb|ABD86178.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90104534|gb|ABD86571.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90106567|gb|ABD88604.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] gi|90107977|gb|ABD90014.1| IstB-like ATP-binding protein [Rhodopseudomonas palustris BisB18] Length = 277 Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 2/112 (1%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L G+GK+HL A+ A I+ RV++ + R +A RD N+ + L Sbjct: 115 LLAFGPPGVGKSHLGAALGQALIEN--GYRVLFTRTTDMVQRLQAARRDLTLQNVMEKLD 172 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 DLL++DD+ +++ + L S + ++ A++P E + P Sbjct: 173 KYDLLILDDLSYVRKDQAETSVLFELISARYERRSLLITANQPFGGWEEIFP 224 >gi|90417462|ref|ZP_01225385.1| DnaA family protein [marine gamma proteobacterium HTCC2207] gi|90330703|gb|EAS45982.1| DnaA family protein [marine gamma proteobacterium HTCC2207] Length = 234 Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 11/132 (8%) Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 ++ S G G +HL+QA+ N VYL + + D A + + L + Sbjct: 46 YVCGSSGTGLSHLMQAVCQQHSTGLNNGAAVYLPLK--------ELCDYPAGQVLEGLES 97 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 DL+ +DD+ + G+ Q + N +S +++ A P LE L + SRL+ Sbjct: 98 SDLVCLDDLDQVAGREEWQAPLFNFFNRCSESGTRLLITAHTLPDYLEVLLDDLLSRLKS 157 Query: 319 GVSVPLGLHDYE 330 G+S L L DY+ Sbjct: 158 GIS--LQLMDYK 167 >gi|291067002|gb|ADD74118.1| chromosomal replication initiator protein DnaA-like protein [Rickettsia felis] Length = 261 Score = 37.7 bits (86), Expect = 4.8, Method: Compositional matrix adjust. Identities = 20/89 (22%), Positives = 45/89 (50%), Gaps = 2/89 (2%) Query: 10 IQENDVEIAEKTPNV-DVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL 68 I+E D+ + K + D+ K N +++ + L+ ++G + +WF + + Sbjct: 159 IKEPDIISSNKDIGILDIGKELDATNKNTVWHQIRKGLRKELGEHIDQAWFAKAEAKECR 218 Query: 69 H-NIVHLSVPTNFLKAWIKNRYLETITKL 96 + ++ L++PT F+ W++N Y I +L Sbjct: 219 NTGLLTLTMPTRFMADWVRNNYSHVIRRL 247 >gi|331013866|gb|EGH93922.1| DNA replication initiation factor [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 80 Score = 37.7 bits (86), Expect = 5.0, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%) Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSEL 305 + L D L +L+ +DD+Q + GK E HL N L DS ++++ AA + P EL Sbjct: 17 GIELFDHLEQYELVCLDDLQAIVGKPEWEEALFHLFNRLRDSGRRLLIAASKSPREL 73 >gi|88810687|ref|ZP_01125944.1| putative orphan protein [Nitrococcus mobilis Nb-231] gi|88792317|gb|EAR23427.1| putative orphan protein [Nitrococcus mobilis Nb-231] Length = 322 Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust. Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 +++I +VA H+ + + +L R + +PR VAMYL + + S I + FG R + Sbjct: 232 LKNILSVVAAHHGLRQAELTEGGRGKRN-QPRVVAMYLCQEVGGLSLQVIAKAFGVRSES 290 Query: 471 TVLHAVRKVEKMLETDITLKKEVEL 495 V H + K+ + L + L+ ++E+ Sbjct: 291 GVSHQIGKLRRELADNPDLRNDLEM 315 >gi|226311000|ref|YP_002770894.1| primosomal protein DnaI [Brevibacillus brevis NBRC 100599] gi|226093948|dbj|BAH42390.1| primosomal protein DnaI [Brevibacillus brevis NBRC 100599] Length = 310 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/141 (21%), Positives = 61/141 (43%), Gaps = 5/141 (3%) Query: 128 ITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 I+ ++P + +S I ++ + + S F + S N + AA E Sbjct: 96 ISSMTPCSKQLSHEEEIRRRRLMRSYYVSEETLNASFEGLVIDSGNLATVDAAIQFCEKV 155 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 G R+ L++H G+GK++++ AI +R +VY+ F+ +I D Sbjct: 156 GTG---ERVKGLYLHGPFGVGKSYIMGAIGRELSERNVASLLVYVPD--FIREMKDSISD 210 Query: 248 NCALNLKDSLRNIDLLLIDDM 268 + L+ + +L++DD+ Sbjct: 211 QSYAGKLELLKEVPVLILDDI 231 >gi|41189528|ref|NP_958645.1| 77ORF013 [Staphylococcus phage 77] gi|40557229|gb|AAR87885.1| 77ORF013 [Staphylococcus phage 77] Length = 259 Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 96 NEKQVHAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 152 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 153 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 191 >gi|114569445|ref|YP_756125.1| DnaA related protein [Maricaulis maris MCS10] gi|114339907|gb|ABI65187.1| DnaA related protein [Maricaulis maris MCS10] Length = 128 Score = 37.4 bits (85), Expect = 5.2, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 2/67 (2%) Query: 415 QRMVAKHYNISRNDLLS-NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 Q VA + IS+ +L + RR R RQ AMYL+ + + FG RD TT Sbjct: 19 QSAVAYAFGISQRELEAPTRRSREAALARQAAMYLAHVAFELPLTRVALAFG-RDRTTAA 77 Query: 474 HAVRKVE 480 HA ++E Sbjct: 78 HACHRIE 84 >gi|168207704|ref|ZP_02633709.1| putative DNA replication protein DnaC [Clostridium perfringens E str. JGS1987] gi|170660975|gb|EDT13658.1| putative DNA replication protein DnaC [Clostridium perfringens E str. JGS1987] Length = 331 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 6/125 (4%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 N LF + S G GKT L IA + VVY T++ + R IR N L+D Sbjct: 184 NILF-YGSPGTGKTFLTYCIAKDLLDN--GFLVVYRTSDELI-RNLREIRFNNDHELEDL 239 Query: 257 LRNIDLLLIDDMQFLQ-GKLIQHEFCHLLN-SLLDSAKQVVAAADRPPSELESLDPRIRS 314 L N DLL+IDD+ Q E LLN +L + K +++ P ++ RI S Sbjct: 240 LINCDLLVIDDLGAEQITDFSTTELFTLLNKKILLNKKMIISTNLNLPELKQAYAERITS 299 Query: 315 RLQGG 319 RL G Sbjct: 300 RLLGN 304 >gi|241896106|ref|ZP_04783402.1| primosomal protein DnaI [Weissella paramesenteroides ATCC 33313] gi|241870620|gb|EER74371.1| primosomal protein DnaI [Weissella paramesenteroides ATCC 33313] Length = 326 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI-RDNCALNLKDSL 257 L+IH S G+GKTHL+ A+AN + +V+L + F+ AI D + +++ Sbjct: 177 LYIHGSYGVGKTHLMGAMANELALEGIPVTLVHLPS--FVVEIRGAIGTDQKPQEMINTI 234 Query: 258 RNIDLLLIDDM 268 + + +L++DD+ Sbjct: 235 KQVPILVLDDI 245 >gi|148827064|ref|YP_001291817.1| DNA replication initiation factor [Haemophilus influenzae PittGG] gi|148718306|gb|ABQ99433.1| DNA replication initiation factor [Haemophilus influenzae PittGG] Length = 185 Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 13/116 (11%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GKTHLL+A +N + Q V L+ + F++A+ +N L +L+ + Sbjct: 5 GSGKTHLLRAFSNEYLINQRTAIYVPLSKSQY---FSTAVLEN--------LEQQELVCL 53 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGG 319 DD+Q + G + L N + S K ++ +AD+ PS L P + SRL G Sbjct: 54 DDLQSVIGNDEWELAIFDLFNRIKASGKTLLLISADKSPSALSVKLPDLNSRLTWG 109 >gi|12719414|ref|NP_075485.1| hypothetical protein phiSLTp22 [Staphylococcus phage phiSLT] gi|29028683|ref|NP_803371.1| dnaC [Staphylococcus phage phi13] gi|66395388|ref|YP_239700.1| ORF018 [Staphylococcus phage 53] gi|88195890|ref|YP_500701.1| phage DnaC-like protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|118430743|ref|YP_873968.1| DNA replication protein [Staphylococcus phage phiNM] gi|122891737|ref|YP_001004283.1| replicative DNA helicase [Staphylococcus phage phiETA2] gi|122891806|ref|YP_001004351.1| replicative DNA helicase [Staphylococcus phage phiETA3] gi|148267302|ref|YP_001246245.1| DNA replication protein-like protein [Staphylococcus aureus subsp. aureus JH9] gi|148717863|ref|YP_001285335.1| DnaC [Staphylococcus phage 80alpha] gi|150393353|ref|YP_001316028.1| phage DnaC-like protein [Staphylococcus aureus subsp. aureus JH1] gi|151220488|ref|YP_001331310.1| hypothetical protein NWMN_0276 [Staphylococcus aureus subsp. aureus str. Newman] gi|151221216|ref|YP_001332038.1| hypothetical protein NWMN_1004 [Staphylococcus aureus subsp. aureus str. Newman] gi|151222016|ref|YP_001332838.1| hypothetical protein NWMN_1804 [Staphylococcus aureus subsp. aureus str. Newman] gi|189427142|ref|YP_001949818.1| putative DNA replication protein [Staphylococcus phage phiMR25] gi|253316898|ref|ZP_04840111.1| hypothetical protein SauraC_12279 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731476|ref|ZP_04865641.1| DNA replication protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257433197|ref|ZP_05609555.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|258418152|ref|ZP_05682417.1| replicative DNA helicase [Staphylococcus aureus A9763] gi|258424440|ref|ZP_05687320.1| DNA replication protein dnaC [Staphylococcus aureus A9635] gi|258441865|ref|ZP_05691050.1| DNA replication protein [Staphylococcus aureus A8115] gi|258448927|ref|ZP_05697036.1| replicative DNA helicase [Staphylococcus aureus A6224] gi|258453905|ref|ZP_05701877.1| DNA replication protein [Staphylococcus aureus A5937] gi|282909305|ref|ZP_06317121.1| replicative DNA helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282917196|ref|ZP_06324951.1| hypothetical protein SATG_01770 [Staphylococcus aureus subsp. aureus D139] gi|282929278|ref|ZP_06336851.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|283958748|ref|ZP_06376194.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|295406572|ref|ZP_06816378.1| hypothetical protein SMAG_01740 [Staphylococcus aureus A8819] gi|297245298|ref|ZP_06929172.1| hypothetical protein SLAG_01394 [Staphylococcus aureus A8796] gi|12697844|dbj|BAB21716.1| unnamed protein product [Staphylococcus phage phiSLT] gi|18920607|gb|AAL82346.1| dnaC [Staphylococcus phage phi13] gi|62635738|gb|AAX90849.1| ORF018 [Staphylococcus phage 53] gi|87203448|gb|ABD31258.1| phage DnaC-like protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|103058649|gb|ABF71592.1| DnaC [Staphylococcus phage 80alpha] gi|104641635|gb|ABF73049.1| DNA replication protein [Staphylococcus aureus phage phiNM1] gi|104641736|gb|ABF73114.1| DNA replication protein [Staphylococcus aureus phage phiNM2] gi|104641937|gb|ABF73245.1| hypothetical protein [Staphylococcus aureus phage phiNM4] gi|121309216|dbj|BAF43838.1| replicative DNA helicase [Staphylococcus phage phiETA2] gi|121309285|dbj|BAF43906.1| replicative DNA helicase [Staphylococcus phage phiETA3] gi|147740371|gb|ABQ48669.1| DNA replication protein-like protein [Staphylococcus aureus subsp. aureus JH9] gi|149945805|gb|ABR51741.1| phage DnaC-like protein [Staphylococcus aureus subsp. aureus JH1] gi|150373288|dbj|BAF66548.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|150374016|dbj|BAF67276.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|150374816|dbj|BAF68076.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus str. Newman] gi|189339053|dbj|BAG48117.1| putative DNA replication protein [Staphylococcus phage phiMR25] gi|253724719|gb|EES93448.1| DNA replication protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257281290|gb|EEV11427.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus E1410] gi|257838945|gb|EEV63424.1| replicative DNA helicase [Staphylococcus aureus A9763] gi|257845453|gb|EEV69487.1| DNA replication protein dnaC [Staphylococcus aureus A9635] gi|257852116|gb|EEV76044.1| DNA replication protein [Staphylococcus aureus A8115] gi|257857823|gb|EEV80715.1| replicative DNA helicase [Staphylococcus aureus A6224] gi|257863770|gb|EEV86526.1| DNA replication protein [Staphylococcus aureus A5937] gi|282318823|gb|EFB49178.1| hypothetical protein SATG_01770 [Staphylococcus aureus subsp. aureus D139] gi|282326873|gb|EFB57170.1| replicative DNA helicase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282589154|gb|EFB94252.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|283789788|gb|EFC28610.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus A017934/97] gi|285816547|gb|ADC37034.1| phage like DNA replication protein dnaC [Staphylococcus phage phiSaST5K] gi|294968717|gb|EFG44740.1| hypothetical protein SMAG_01740 [Staphylococcus aureus A8819] gi|297177969|gb|EFH37218.1| hypothetical protein SLAG_01394 [Staphylococcus aureus A8796] gi|315128939|gb|EFT84936.1| hypothetical protein CGSSa03_14053 [Staphylococcus aureus subsp. aureus CGS03] gi|329728600|gb|EGG65030.1| hypothetical protein SA21189_1567 [Staphylococcus aureus subsp. aureus 21189] Length = 259 Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 96 NEKQVHAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 152 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 153 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 191 >gi|82523748|emb|CAI78748.1| chromosomal replication initiator protein dnaA [uncultured gamma proteobacterium] Length = 243 Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust. Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 20/145 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 ++++ G GK+HLLQA +A +YL + +R + + Sbjct: 59 IYVYGPPGAGKSHLLQASCHAG-----RAETLYLP--------LAELRQFPGQEVMQGVE 105 Query: 259 NIDLLLIDDMQFLQG----KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 +D + IDD+Q + G +L FC N ++V A D P L +RS Sbjct: 106 RLDRVCIDDVQAVLGDADWELALFNFC---NGARQRGCRMVVAGDAAPRALAVNLADLRS 162 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNR 339 RL G+ L E + IL+ R Sbjct: 163 RLSWGIVYQLAEGSDEEKVDILRFR 187 >gi|149182845|ref|ZP_01861306.1| primosomal protein DnaI [Bacillus sp. SG-1] gi|148849460|gb|EDL63649.1| primosomal protein DnaI [Bacillus sp. SG-1] Length = 313 Score = 37.4 bits (85), Expect = 5.6, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 54/107 (50%), Gaps = 8/107 (7%) Query: 164 FSTFIEGSSNRV-ALTAAQSIAEVDSHGYTTVR-LNPLFIHASVGLGKTHLLQAIANASI 221 FST S R+ A+ A E Y R L L++H G+GK++LL AIAN Sbjct: 134 FSTIDLDSPGRLEAVDLANEFVE----NYEAGRNLKGLYLHGKFGVGKSYLLGAIANQLA 189 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 +++ +VY+ F+ ++ D+ + ++++ +L++DD+ Sbjct: 190 EKKVASLLVYIPE--FVREMKQSLNDHSMDDKLEAVKKAPVLMLDDI 234 >gi|227542891|ref|ZP_03972940.1| IstB family ATP-binding protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181324|gb|EEI62296.1| IstB family ATP-binding protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 201 Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 7/75 (9%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPN---LRVVYLTAEYFMWRFASAIRDNCALNL 253 N L I S G+GKT+L +A+ N + ++ + RV L A+ +W S R L Sbjct: 58 NNLIIIGSTGVGKTYLAEALINQACRKNYSALFTRVDDLQAQLAIWGEESEQR----YKL 113 Query: 254 KDSLRNIDLLLIDDM 268 +L+ +DLL++DD Sbjct: 114 LKNLKRVDLLVLDDF 128 >gi|116495185|ref|YP_806919.1| DNA replication protein [Lactobacillus casei ATCC 334] gi|191638694|ref|YP_001987860.1| Primosomal protein DnaI (Helicase loader) [Lactobacillus casei BL23] gi|227534797|ref|ZP_03964846.1| primosomal protein DnaI [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239632067|ref|ZP_04675098.1| DNA replication protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066749|ref|YP_003788772.1| DNA replication protein [Lactobacillus casei str. Zhang] gi|116105335|gb|ABJ70477.1| replicative DNA helicase loader DnaI [Lactobacillus casei ATCC 334] gi|190712996|emb|CAQ67002.1| Primosomal protein DnaI (Helicase loader) [Lactobacillus casei BL23] gi|227187553|gb|EEI67620.1| primosomal protein DnaI [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526532|gb|EEQ65533.1| DNA replication protein [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300439156|gb|ADK18922.1| DNA replication protein [Lactobacillus casei str. Zhang] gi|327382735|gb|AEA54211.1| Primosomal DnaI domain-containing protein [Lactobacillus casei LC2W] gi|327385922|gb|AEA57396.1| Primosomal DnaI domain-containing protein [Lactobacillus casei BD-II] Length = 311 Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust. Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 17/123 (13%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++ G+GKT+LL AIAN + + + + F+ +AI +N L D ++ Sbjct: 160 LYLSGPFGVGKTYLLGAIAN-DLAEKGGIASTLIHVPTFVVEMKNAIGNNTVLPKIDRIK 218 Query: 259 NIDLLLIDDMQF----------LQGKLIQHEFCHLLNSLLDSAKQV------VAAADRPP 302 +L++DD+ + G ++Q+ + +L S K + +A DR Sbjct: 219 RAQVLILDDIGAESISPWVRDDVLGIILQYRMQEKMPTLFSSNKSMEDLTASLAGTDRGN 278 Query: 303 SEL 305 SE+ Sbjct: 279 SEM 281 >gi|269202493|ref|YP_003281762.1| DnaC [Staphylococcus aureus subsp. aureus ED98] gi|262074783|gb|ACY10756.1| DnaC [Staphylococcus aureus subsp. aureus ED98] Length = 257 Score = 37.4 bits (85), Expect = 5.7, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 94 NEKQVQAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 150 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 151 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 189 >gi|288869580|ref|ZP_05975070.2| AAA family ATPase [Methanobrevibacter smithii DSM 2374] gi|288861611|gb|EFC93909.1| AAA family ATPase [Methanobrevibacter smithii DSM 2374] Length = 740 Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust. Identities = 68/310 (21%), Positives = 129/310 (41%), Gaps = 50/310 (16%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 + +H G GKT L +A+A+ S + + + M ++ +N +++ Sbjct: 250 VLMHGPPGTGKTLLAKAVASES-----DAHFIAINGPEIMSKYVGGSEENLREYFEEAEE 304 Query: 259 NI-DLLLIDDMQFL-------QGKLIQHEFCHLLNSLLDSAKQ-----VVAAADRPPSEL 305 N ++ ID++ + QG+ + LL +L+D K V+ A +RP Sbjct: 305 NAPSIIFIDELDAIAPKREDTQGETERRTVAQLL-TLMDGLKSRGQVVVIGATNRP---- 359 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 +SLD +R + + +G+ D E R IL+ I + P + E+V +H + T Sbjct: 360 DSLDQALRRPGRFDREIEIGVPDSEEREEILE----IHTRNMP---LAEDVDLHKLASTT 412 Query: 366 TS--GRELDGAFNQLVFR--HSFAPILT--AEIADELLSHLVNTGETKKMRIEDIQ---- 415 G +L+ + R P + EI +E+L +V T + K +++IQ Sbjct: 413 HGFVGADLESLCKEAAMRVVRRIIPEIKNDEEIPEEVLKKIVVTNDDFKSALKEIQPSAL 472 Query: 416 -RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR-DHTTVL 473 ++ + N+ +D+ V+ ++ + P PE +FG R T+L Sbjct: 473 REVLVQVPNVKWDDVGGLDDVKQELK--------EAVEWPLKHPEKFEKFGVRPPKGTLL 524 Query: 474 HAVRKVEKML 483 + V K L Sbjct: 525 YGVPGTGKTL 534 >gi|222445802|ref|ZP_03608317.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii DSM 2375] gi|222435367|gb|EEE42532.1| hypothetical protein METSMIALI_01445 [Methanobrevibacter smithii DSM 2375] Length = 740 Score = 37.4 bits (85), Expect = 5.8, Method: Compositional matrix adjust. Identities = 68/310 (21%), Positives = 129/310 (41%), Gaps = 50/310 (16%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 + +H G GKT L +A+A+ S + + + M ++ +N +++ Sbjct: 250 VLMHGPPGTGKTLLAKAVASES-----DAHFIAINGPEIMSKYVGGSEENLREYFEEAEE 304 Query: 259 NI-DLLLIDDMQFL-------QGKLIQHEFCHLLNSLLDSAKQ-----VVAAADRPPSEL 305 N ++ ID++ + QG+ + LL +L+D K V+ A +RP Sbjct: 305 NAPSIIFIDELDAIAPKREDTQGETERRTVAQLL-TLMDGLKSRGQVVVIGATNRP---- 359 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 +SLD +R + + +G+ D E R IL+ I + P + E+V +H + T Sbjct: 360 DSLDQALRRPGRFDREIEIGVPDSEEREEILE----IHTRNMP---LAEDVDLHKLASTT 412 Query: 366 TS--GRELDGAFNQLVFR--HSFAPILT--AEIADELLSHLVNTGETKKMRIEDIQ---- 415 G +L+ + R P + EI +E+L +V T + K +++IQ Sbjct: 413 HGFVGADLESLCKEAAMRVVRRIIPEIKNDEEIPEEVLKKIVVTNDDFKSALKEIQPSAL 472 Query: 416 -RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR-DHTTVL 473 ++ + N+ +D+ V+ ++ + P PE +FG R T+L Sbjct: 473 REVLVQVPNVKWDDVGGLDDVKQELK--------EAVEWPLKHPEKFEKFGVRPPKGTLL 524 Query: 474 HAVRKVEKML 483 + V K L Sbjct: 525 YGVPGTGKTL 534 >gi|239507381|ref|YP_002939692.1| hypothetical protein CUR020 [Staphylococcus phage phiPVL-CN125] gi|238684006|gb|ACR54209.1| hypothetical protein CUR020 [Staphylococcus phage phiPVL-CN125] Length = 257 Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 94 NEKQVQAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 150 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 151 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 189 >gi|304443285|ref|YP_003857115.1| hypothetical protein SAP26_gp47 [Staphylococcus phage SAP-26] gi|302749893|gb|ADL66978.1| hypothetical protein [Staphylococcus phage SAP-26] Length = 257 Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 94 NEKQVQAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 150 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 151 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 189 >gi|291276893|ref|YP_003516665.1| putative hypothetical glycine-rich autotransporter [Helicobacter mustelae 12198] gi|290964087|emb|CBG39931.1| putative hypothetical glycine-rich autotransporter [Helicobacter mustelae 12198] Length = 2120 Score = 37.4 bits (85), Expect = 5.9, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 68/159 (42%), Gaps = 16/159 (10%) Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVAL-PSVEKTASSPSITKLSPINTNISKSPII 144 KN +T+TK ++I G IL +L PS K + SI L +N N P I Sbjct: 4 KNYLSKTLTK------NKIFGSMILAMLGSLSPSFAKENITNSIWSLQNVN-NYGAGPFI 56 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH--GYTTVRLNPLFIH 202 G T +G+ ++ T I G+S VA T+ I GY T N I+ Sbjct: 57 AGNTTTWSTWGASFSQSYLNGTLIFGNSGEVANTSGGGIWFGRGGDVGYITASFNAKNIY 116 Query: 203 ASVGLGKTHLLQ----AIANASIKRQPNLRVVYLTAEYF 237 + LG + + A N S ++ NL+ LT E++ Sbjct: 117 LTSTLGAGNSWRTGGGASLNFSATQKANLQS--LTLEFY 153 >gi|257426135|ref|ZP_05602551.1| DnaC [Staphylococcus aureus subsp. aureus 55/2053] gi|257428796|ref|ZP_05605191.1| DnaC [Staphylococcus aureus subsp. aureus 65-1322] gi|257431407|ref|ZP_05607781.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257434118|ref|ZP_05610469.1| DnaC protein [Staphylococcus aureus subsp. aureus E1410] gi|282914843|ref|ZP_06322624.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|282925340|ref|ZP_06332996.1| hypothetical protein SARG_02503 [Staphylococcus aureus subsp. aureus C101] gi|293507857|ref|ZP_06667699.1| hypothetical protein SCAG_02373 [Staphylococcus aureus subsp. aureus 58-424] gi|293510829|ref|ZP_06669529.1| DnaC [Staphylococcus aureus subsp. aureus M809] gi|293545429|ref|ZP_06672105.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|257271043|gb|EEV03212.1| DnaC [Staphylococcus aureus subsp. aureus 55/2053] gi|257274440|gb|EEV05952.1| DnaC [Staphylococcus aureus subsp. aureus 65-1322] gi|257277853|gb|EEV08517.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 68-397] gi|257281044|gb|EEV11188.1| DnaC protein [Staphylococcus aureus subsp. aureus E1410] gi|282312974|gb|EFB43374.1| hypothetical protein SARG_02503 [Staphylococcus aureus subsp. aureus C101] gi|282321237|gb|EFB51567.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M899] gi|290919740|gb|EFD96812.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus M1015] gi|291094920|gb|EFE25188.1| hypothetical protein SCAG_02373 [Staphylococcus aureus subsp. aureus 58-424] gi|291466301|gb|EFF08827.1| DnaC [Staphylococcus aureus subsp. aureus M809] Length = 257 Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 94 NEKQVQAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 150 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 151 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 189 >gi|66395310|ref|YP_239621.1| ORF017 [Staphylococcus phage 69] gi|62635661|gb|AAX90772.1| ORF017 [Staphylococcus phage 69] Length = 259 Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 96 NEKQVHAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 152 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 153 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 191 >gi|227530471|ref|ZP_03960520.1| primosomal protein DnaI [Lactobacillus vaginalis ATCC 49540] gi|227349576|gb|EEJ39867.1| primosomal protein DnaI [Lactobacillus vaginalis ATCC 49540] Length = 311 Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 59/117 (50%), Gaps = 7/117 (5%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP-LFIHASVGLGKTH 211 + G+ D + + + + +AL AA VD Y+ +P L+++ G+GKT+ Sbjct: 121 IHGASFDHFYTEEPY-QTETRNIALNAALDF--VDQ--YSPNEFHPGLYLYGRFGVGKTY 175 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 LL AIAN + +Q + + F+ ++I+ N + D+++ +L++DD+ Sbjct: 176 LLGAIAN-ELAQQKGVATTMMHFPSFVVEMRNSIKTNNIGSKLDAVKKAPVLVLDDI 231 >gi|156604038|ref|YP_001429983.1| DnaC [Staphylococcus phage tp310-3] gi|154818124|gb|ABS87550.1| DnaC [Staphylococcus phage tp310-3] Length = 257 Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 94 NEKQVQAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 150 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 151 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 189 >gi|17228644|ref|NP_485192.1| hypothetical protein all1149 [Nostoc sp. PCC 7120] gi|17130495|dbj|BAB73106.1| all1149 [Nostoc sp. PCC 7120] Length = 162 Score = 37.4 bits (85), Expect = 6.0, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 47/103 (45%), Gaps = 9/103 (8%) Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F FSTF+ + R L Q IA + S T + NPLF+ A +G G ++ I++ Sbjct: 27 FAFSTFVMNALAR--LQPTQGIAAMQSINITVI--NPLFMTAFLGTGVACIILLISSLLG 82 Query: 222 KRQPNLRVVYLTAE---YFMWRFASAIRDNCALNLKDSLRNID 261 QPN VYL Y + F I N LN ++ N D Sbjct: 83 WHQPN--AVYLLVASLLYLVGTFGVTIVFNVPLNEALAIANPD 123 >gi|257438762|ref|ZP_05614517.1| putative DNA replication protein [Faecalibacterium prausnitzii A2-165] gi|257198799|gb|EEU97083.1| putative DNA replication protein [Faecalibacterium prausnitzii A2-165] Length = 323 Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 50/97 (51%), Gaps = 7/97 (7%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--ALNLKDS 256 L + + GLGKTH A+A A I Q + V+Y+++ F + +A D+ A L + Sbjct: 183 LMLFGNAGLGKTH--AALAIAGIVLQKDFDVIYVSSPDFFGKLENARFDSSEDAETLLRT 240 Query: 257 LRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSA 291 DLL++DD+ +F+ I F LLN+ L + Sbjct: 241 ASAADLLILDDLGTEFVTPYFITT-FYSLLNNRLGAG 276 >gi|323439183|gb|EGA96911.1| hypothetical protein SAO11_2021 [Staphylococcus aureus O11] Length = 257 Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 94 NEKQVQAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 150 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 151 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 189 >gi|326203438|ref|ZP_08193302.1| IstB domain protein ATP-binding protein [Clostridium papyrosolvens DSM 2782] gi|325986258|gb|EGD47090.1| IstB domain protein ATP-binding protein [Clostridium papyrosolvens DSM 2782] Length = 244 Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust. Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 6/93 (6%) Query: 180 AQSIAEVDSHGYTTVRL---NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A++IA H + T++L N + + G GKTHL AIAN +KR + V+Y+ Sbjct: 77 ARTIATEYLHNFQTIKLGRNNSIALLGQPGSGKTHLTIAIANELLKR--GIGVLYMPYRE 134 Query: 237 FMWRFASAIRDNCALNLK-DSLRNIDLLLIDDM 268 + + I D + D + +LLIDD+ Sbjct: 135 VVTQLKQIINDEEEYQSRMDKFKMAPVLLIDDL 167 >gi|50288055|ref|XP_446456.1| hypothetical protein [Candida glabrata CBS 138] gi|49525764|emb|CAG59383.1| unnamed protein product [Candida glabrata] Length = 826 Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust. Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 227 LRVVYLTAEYFMWRFASAIRDNCALN----LKDSLRNIDLLLIDDMQFLQGKLIQHEFCH 282 L + T YF++RF +R N + KD L ++ ++I + KL Sbjct: 93 LNYIVSTWRYFVFRFGINLRTNTLVPSKNIYKDKLLQVNPIVISKKHSEEVKLGNKTVES 152 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 LLN ++ A D S DP + +L +SVP +YE++F+ ++ R + Sbjct: 153 LLNDIV--AHMFPKKTDTNMKYEPSKDPHLNVKLPENISVPSETTNYEVQFNSIRGRFKV 210 Query: 343 SQ 344 + Sbjct: 211 EE 212 >gi|91792999|ref|YP_562650.1| DNA replication initiation factor [Shewanella denitrificans OS217] gi|91715001|gb|ABE54927.1| regulatory inactivation of DnaA Hda protein [Shewanella denitrificans OS217] Length = 236 Score = 37.4 bits (85), Expect = 6.4, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 58/124 (46%), Gaps = 13/124 (10%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+I+ V G+THL+ A ++ + R +Y+ I + + L + L Sbjct: 49 LYIYGPVKSGRTHLMH--AACALANDKDRRTLYIPL---------GIHASISPALFEGLE 97 Query: 259 NIDLLLIDDMQFLQGKLIQHE-FCHLLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRL 316 +++L+ IDD+ + G I E HL N + + ++ + P+E L P + SR+ Sbjct: 98 SLELICIDDIDAIAGHPIWEEAIFHLYNRIAEHKDCHLIVSGKASPTEAGFLLPDLVSRM 157 Query: 317 QGGV 320 Q G+ Sbjct: 158 QWGL 161 >gi|154497130|ref|ZP_02035826.1| hypothetical protein BACCAP_01423 [Bacteroides capillosus ATCC 29799] gi|150273529|gb|EDN00657.1| hypothetical protein BACCAP_01423 [Bacteroides capillosus ATCC 29799] Length = 334 Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 62/135 (45%), Gaps = 10/135 (7%) Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA--IRD-NCALN 252 N LF+ + GLGKT L IA + VVY TA RF RD + Sbjct: 186 FNNLFLSGAPGLGKTFLSACIARTV--SENGFSVVYDTAVNIFSRFEDKKFSRDADDTRE 243 Query: 253 LKDSLR---NIDLLLIDDM-QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL-ES 307 +D R + DLL++DD+ + +Q L+NS L + ++ V +++ ++ Sbjct: 244 ARDETRRYLSCDLLILDDLGSEMTTPFVQSALYTLINSRLTADRRTVISSNLSMEDVRRR 303 Query: 308 LDPRIRSRLQGGVSV 322 P+I SRL+G V Sbjct: 304 YAPQIASRLEGEYRV 318 >gi|258541973|ref|YP_003187406.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-01] gi|256633051|dbj|BAH99026.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-01] gi|256636108|dbj|BAI02077.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-03] gi|256639163|dbj|BAI05125.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-07] gi|256642217|dbj|BAI08172.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-22] gi|256645272|dbj|BAI11220.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-26] gi|256648327|dbj|BAI14268.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-32] gi|256651380|dbj|BAI17314.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654371|dbj|BAI20298.1| chromosomal replication initiator protein DnaA-related protein [Acetobacter pasteurianus IFO 3283-12] Length = 255 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 33/134 (24%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 + + G GKTHLL A R+ + I + LN ++ Sbjct: 72 MALWGESGTGKTHLLSIWAG---------------------RYGAPIMEGSRLNTHEAA- 109 Query: 259 NIDLLLIDDMQFLQGKLI-------QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 +L +D F L + + HL+N + ++ AA RPP+ + P Sbjct: 110 ----MLFEDGGFRAAALDNADKVPNERDLLHLINLARERRVALLMAARRPPARWPVVLPD 165 Query: 312 IRSRLQGGVSVPLG 325 + SRL+ SVPLG Sbjct: 166 LASRLRATASVPLG 179 >gi|254361165|ref|ZP_04977309.1| DNA replication initiation protein A [Mannheimia haemolytica PHL213] gi|153092656|gb|EDN73705.1| DNA replication initiation protein A [Mannheimia haemolytica PHL213] Length = 236 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 20/138 (14%) Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 +T V+ +I GK+HLL+A++N + + LT + F+ + DN Sbjct: 34 FTDVQQPFFYIWGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANY---FSPLVLDNAE 90 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLN------SLLDSAKQ--VVAAADRP 301 L ++++ +DD+Q + G + +L N L + ++ ++ +AD P Sbjct: 91 L--------LNVICLDDIQAIAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCP 142 Query: 302 PSELESLDPRIRSRLQGG 319 P +L P +RSRL G Sbjct: 143 PHQLNIQLPDLRSRLTWG 160 >gi|66395229|ref|YP_239545.1| ORF014 [Staphylococcus phage 187] gi|62635581|gb|AAX90692.1| ORF014 [Staphylococcus phage 187] Length = 257 Score = 37.0 bits (84), Expect = 7.2, Method: Compositional matrix adjust. Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 6/99 (6%) Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N + A Q+ E G++T L + S G GK+HL AIA A +K + + V ++ Sbjct: 94 NEKQVQAKQTAIEY-VQGFSTKEPKSLILQGSYGTGKSHLAYAIAKA-VKAKGHT-VAFM 150 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLR---NIDLLLIDDM 268 M R + N + +R +IDLL++DDM Sbjct: 151 HIPMLMDRIKATYNKNAVETTDELVRLLSDIDLLVLDDM 189 >gi|329114266|ref|ZP_08243028.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001] gi|326696342|gb|EGE48021.1| Hypothetical protein APO_1054 [Acetobacter pomorum DM001] Length = 255 Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust. Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 33/134 (24%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 + + G GKTHLL A R+ + I + LN ++ Sbjct: 72 MALWGESGTGKTHLLSIWAG---------------------RYGAPIMEGSRLNTHEAA- 109 Query: 259 NIDLLLIDDMQFLQGKLI-------QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 +L +D F L + + HL+N + ++ AA RPP+ + P Sbjct: 110 ----MLFEDGGFRAAALDNADKVPNERDLLHLINLARERRVALLMAARRPPARWPVVLPD 165 Query: 312 IRSRLQGGVSVPLG 325 + SRL+ SVPLG Sbjct: 166 LASRLRATASVPLG 179 >gi|315497655|ref|YP_004086459.1| chromosomal replication initiator dnaa domain protein [Asticcacaulis excentricus CB 48] gi|315415667|gb|ADU12308.1| Chromosomal replication initiator DnaA domain protein [Asticcacaulis excentricus CB 48] Length = 125 Score = 37.0 bits (84), Expect = 7.4, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%) Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 +R+ R RQ+ MYL + IG FG RD TTV HA R++E + + + L + Sbjct: 44 DRKDARTSRARQLCMYLISVAWQWPLHRIGAAFG-RDRTTVGHACRRIEDLRDNRL-LDE 101 Query: 492 EVELLK 497 ++E L+ Sbjct: 102 QIERLE 107 >gi|242373975|ref|ZP_04819549.1| primosomal protein DnaI [Staphylococcus epidermidis M23864:W1] gi|242348329|gb|EES39931.1| primosomal protein DnaI [Staphylococcus epidermidis M23864:W1] Length = 307 Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust. Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%) Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R L A + E+ + ++ L++H G GK+ +L AIAN + + +VYL Sbjct: 136 RDRLDVAMAAEEICTAIANDEKVKGLYLHGPFGTGKSFILGAIANQLKSKMISSTIVYLP 195 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 F+ S +D + +R ++L++DD+ Sbjct: 196 E--FIRTLKSGFKDGSFERKLERVREANILMLDDI 228 >gi|261491981|ref|ZP_05988557.1| DNA replication initiation protein A [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261495291|ref|ZP_05991743.1| DNA replication initiation protein A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309056|gb|EEY10307.1| DNA replication initiation protein A [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312352|gb|EEY13479.1| DNA replication initiation protein A [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 236 Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust. Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 20/138 (14%) Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 +T V+ +I GK+HLL+A++N + + LT + F+ + DN Sbjct: 34 FTDVQQPFFYIWGGKSCGKSHLLKAVSNHFLLNNQTSSYIPLTKANY---FSPLVLDNAE 90 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLN------SLLDSAKQ--VVAAADRP 301 L ++++ +DD+Q + G + +L N L + ++ ++ +AD P Sbjct: 91 L--------LNVICLDDIQAIAGDAEWELAIFNLFNQIREQQGLFNEGQKTLLLISADCP 142 Query: 302 PSELESLDPRIRSRLQGG 319 P +L P +RSRL G Sbjct: 143 PHQLNIQLPDLRSRLTWG 160 >gi|213622272|ref|ZP_03375055.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 142 Score = 37.0 bits (84), Expect = 7.7, Method: Composition-based stats. Identities = 31/147 (21%), Positives = 65/147 (44%), Gaps = 16/147 (10%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +++++ ++ W + L+ + N + L P F+ W++++YL I L + Sbjct: 1 MQDELPATEFSMWIRPLQ-AELSDNTLALYAPNRFVLDWVRDKYLNNINGLL----NTFC 55 Query: 106 GVEI--LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-----GKQTI----SPVF 154 G + L V V +T +P ++P T ++ + G + P + Sbjct: 56 GADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTY 115 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQ 181 S ++ + F F+EG SN++A AA+ Sbjct: 116 RSNVNVKHTFDNFVEGKSNQLARAAAR 142 >gi|148642702|ref|YP_001273215.1| cell division protein CDC48 [Methanobrevibacter smithii ATCC 35061] gi|148551719|gb|ABQ86847.1| cell division control protein Cdc48, AAA+ ATPase family [Methanobrevibacter smithii ATCC 35061] Length = 730 Score = 37.0 bits (84), Expect = 8.0, Method: Compositional matrix adjust. Identities = 54/236 (22%), Positives = 102/236 (43%), Gaps = 36/236 (15%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 + +H G GKT L +A+A+ S + + + M ++ +N +++ Sbjct: 240 VLMHGPPGTGKTLLAKAVASES-----DAHFIAINGPEIMSKYVGGSEENLREYFEEAEE 294 Query: 259 NI-DLLLIDDMQFL-------QGKLIQHEFCHLLNSLLDSAKQ-----VVAAADRPPSEL 305 N ++ ID++ + QG+ + LL +L+D K V+ A +RP Sbjct: 295 NAPSIIFIDELDAIAPKREDTQGETERRTVAQLL-TLMDGLKSRGQVVVIGATNRP---- 349 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 +SLD +R + + +G+ D E R IL+ I + P + E+V +H + T Sbjct: 350 DSLDQALRRPGRFDREIEIGVPDSEEREEILE----IHTRNMP---LAEDVDLHKLASTT 402 Query: 366 TS--GRELDGAFNQLVFR--HSFAPILT--AEIADELLSHLVNTGETKKMRIEDIQ 415 G +L+ + R P + EI +E+L +V T + K +++IQ Sbjct: 403 HGFVGADLESLCKEAAMRVVRRIIPEIKNDEEIPEEVLKKIVVTNDDFKSALKEIQ 458 >gi|332294939|ref|YP_004436862.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] gi|332178042|gb|AEE13731.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] Length = 257 Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 10/71 (14%) Query: 206 GLGKTHLLQAIA-NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS---LRNID 261 G+GKTHL I A+++R+ RV++ TAE M IR N + + + L ID Sbjct: 114 GVGKTHLAVGIGVRAALQRK---RVLFFTAEELM---TELIRANISAKIAEYVELLSRID 167 Query: 262 LLLIDDMQFLQ 272 L++ID++ +L+ Sbjct: 168 LIIIDELGYLE 178 >gi|50303471|ref|XP_451677.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49640809|emb|CAH02070.1| KLLA0B03234p [Kluyveromyces lactis] Length = 804 Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust. Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 19/169 (11%) Query: 191 YTTVRLNP---LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 +T +NP + +H G GKT LL+ +AN + + + ++Y + +A+RD Sbjct: 296 FTDFGINPPRGILLHGPPGTGKTMLLRCVANETDAHILTISGPSIVSKY-LGETEAALRD 354 Query: 248 --NCALNLKDSLRNIDLL-------LIDDMQFLQGKLIQHEFCHLLNSLLDSAK-QVVAA 297 N A + S+ ID + DD ++ +++ L++ + S + VVAA Sbjct: 355 IFNEAKRYQPSIIFIDEIDSLAPNRANDDSGEVESRVVAT-LLTLMDGMDGSGRLAVVAA 413 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 +RP S+DP +R + + + + D E R IL+ + + K+ Sbjct: 414 TNRP----NSIDPALRRPGRFDQEIEISIPDVEARHDILRKQFSRMSKQ 458 >gi|226326465|ref|ZP_03801983.1| hypothetical protein PROPEN_00313 [Proteus penneri ATCC 35198] gi|225205064|gb|EEG87418.1| hypothetical protein PROPEN_00313 [Proteus penneri ATCC 35198] Length = 235 Score = 37.0 bits (84), Expect = 8.4, Method: Compositional matrix adjust. Identities = 53/212 (25%), Positives = 92/212 (43%), Gaps = 24/212 (11%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA-IANASIK 222 F +F G + +L AA A SHG + ++ + G GK+HLL A A S+K Sbjct: 21 FDSFYAGEN--ASLVAAIRTAIHQSHG------SYIYFWSRDGGGKSHLLHAACAELSLK 72 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 V YF+ ++ + + ++ L+ ID++Q + G + + Sbjct: 73 GDAVGYVPLDKRAYFV------------PDVLEGMEHLSLVCIDNVQCIAGDEEWELALF 120 Query: 282 HLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 +L N +L+ + ++ DRPP ++E P + SRL G L E + L+ R Sbjct: 121 NLYNRVLEHGRTCLLITGDRPPRQIELQLPDLASRLDWGQIYRLQPLSDEEKIQALQLRA 180 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 + E P+ ++ VL + R + T LD Sbjct: 181 KLRGFELPE-DVGRFVLKRLDRKMRTLFEMLD 211 >gi|332295663|ref|YP_004437586.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] gi|332178766|gb|AEE14455.1| IstB domain protein ATP-binding protein [Thermodesulfobium narugense DSM 14796] Length = 257 Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 10/71 (14%) Query: 206 GLGKTHLLQAIA-NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS---LRNID 261 G+GKTHL I A+++R+ RV++ TAE M IR N + + + L ID Sbjct: 114 GVGKTHLAVGIGVRAALQRK---RVLFFTAEELM---TELIRANISAKIAEYVELLSRID 167 Query: 262 LLLIDDMQFLQ 272 L++ID++ +L+ Sbjct: 168 LIIIDELGYLE 178 >gi|182417016|ref|ZP_02948395.1| DNA replication protein DnaC [Clostridium butyricum 5521] gi|237669638|ref|ZP_04529616.1| DNA replication protein DnaC [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379113|gb|EDT76616.1| DNA replication protein DnaC [Clostridium butyricum 5521] gi|237654872|gb|EEP52434.1| dnaC family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 326 Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust. Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 6/135 (4%) Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 + ++ N LF + + G GKT+L I+ + VVY T++ + IR N Sbjct: 178 NFASLHTNLLF-YGNPGSGKTYLSYCISKNIL--DDGYLVVYKTSDELIQNLRD-IRFNN 233 Query: 250 ALNLKDSLRNIDLLLIDDM--QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 NL+ L + DLL+IDD+ + L I F L +L+ K +++ P ++ Sbjct: 234 NTNLESLLFDCDLLIIDDLGAEHLNEFSIAELFNILNRKILNKKKMIISTNLTLPDIVKR 293 Query: 308 LDPRIRSRLQGGVSV 322 RI SRL G + Sbjct: 294 YSERISSRLIGDFKL 308 >gi|258593394|emb|CBE69733.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length = 320 Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust. Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 ++++ R VA+ Y ++ DL+ R + R+ AMYL K + + E FG + Sbjct: 227 VDEVLREVAQVYQVAVEDLVRGGRGQAS-EARKAAMYLVKRLCDLTLAETAEHFGVGSYG 285 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 V A V ++ D ++ VE ++ LI++ Sbjct: 286 VVGWACHAVRSAIKVDGPFRERVEQVQALINQ 317 >gi|94310229|ref|YP_583439.1| hydrogenase accessory protein HypB [Cupriavidus metallidurans CH34] gi|93354081|gb|ABF08170.1| HypB1 GTP hydrolase involved in nickel liganding into hydrogenases (CMGI-2) [Cupriavidus metallidurans CH34] Length = 345 Score = 37.0 bits (84), Expect = 8.6, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 12/117 (10%) Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALT 178 V++ + P + ++P N ++ G +S V G + T I G++NRVA Sbjct: 18 VQQASGEPGVITVNPANGDLH---FGAGVARVS-VPGMSQERAIKLETDILGANNRVA-- 71 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 Q+ A + HG T L + +S G GKT LL A A RQP L V + + Sbjct: 72 -QQNRAHFELHGVTA-----LNVVSSPGSGKTTLLCATIEALKARQPGLHVAVIEGD 122 >gi|311069393|ref|YP_003974316.1| primosomal protein DnaI [Bacillus atrophaeus 1942] gi|310869910|gb|ADP33385.1| primosomal protein DnaI [Bacillus atrophaeus 1942] Length = 310 Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust. Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 T + L++H G+GKT +L AIAN +++ + +VY+ F+ ++++D Sbjct: 157 TGKGKGLYLHGKFGVGKTFILAAIANELAEKEYSSMIVYVPE--FVRELKNSMQDQSLEA 214 Query: 253 LKDSLRNIDLLLIDDM 268 + +++ +L++DD+ Sbjct: 215 KLNMVKSTPVLMLDDL 230 >gi|226356201|ref|YP_002785941.1| ATP-dependent Clp protease, ATP-binding subunit ClpC [Deinococcus deserti VCD115] gi|226318191|gb|ACO46187.1| putative ATP-dependent Clp protease, ATP-binding subunit ClpC [Deinococcus deserti VCD115] Length = 747 Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust. Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 11/123 (8%) Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L E SR++ L SV LP E P +T+ I + I+ I ++T + + Sbjct: 388 LIDEAASRVR----LNMSVGLPVAENEQGEPYVTR-EDIESVINSMGGIYSEETAAQL-- 440 Query: 156 SPLDSRFVFSTFIEGSSNRV-ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S LD S + G + V AL++A A V G T V + LF+ S G+GKTHL + Sbjct: 441 SDLD--LQLSEQVYGQPDAVKALSSALRRARVGLGGRTRVAASFLFVGPS-GVGKTHLAK 497 Query: 215 AIA 217 A+A Sbjct: 498 ALA 500 >gi|239616476|ref|YP_002939798.1| IstB domain protein ATP-binding protein [Kosmotoga olearia TBF 19.5.1] gi|239505307|gb|ACR78794.1| IstB domain protein ATP-binding protein [Kosmotoga olearia TBF 19.5.1] Length = 240 Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust. Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 3/109 (2%) Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 V TF + S V + + ++ E+ + + N L ++ VG GKTH+ AI A+ Sbjct: 61 VMKTFEDYSFENVQIPKSITLEELQEGRFLGKKEN-LILYGPVGTGKTHMATAIGIAACN 119 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 R+ +R Y TA + A + +LR DLL+ D+ ++ Sbjct: 120 REKKVR-FYRTAT-LVNELVEAKSNGTLKRFLKTLRKTDLLICDEWGYI 166 >gi|289432427|ref|YP_003462300.1| IstB domain protein ATP-binding protein [Dehalococcoides sp. GT] gi|288946147|gb|ADC73844.1| IstB domain protein ATP-binding protein [Dehalococcoides sp. GT] Length = 469 Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 25/130 (19%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---- 254 L G GKTHL AIAN + T + +++ AS + D+ + + Sbjct: 127 LVFTGPSGAGKTHLAAAIANRRLS----------TGQPVLYKRASELIDDLKKSFEPDSD 176 Query: 255 -------DSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 D L+N LL+IDD+ G + + + LL + P +E Sbjct: 177 AGYSQSFDILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLSTPINE-- 234 Query: 307 SLDPRIRSRL 316 LDPRI+SRL Sbjct: 235 -LDPRIQSRL 243 >gi|73748379|ref|YP_307618.1| ATP-binding protein [Dehalococcoides sp. CBDB1] gi|73660095|emb|CAI82702.1| ATP-binding protein, DnaC family [Dehalococcoides sp. CBDB1] Length = 435 Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 25/130 (19%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---- 254 L G GKTHL AIAN + T + +++ AS + D+ + + Sbjct: 93 LVFTGPSGAGKTHLAAAIANRRLS----------TGQPVLYKRASELIDDLKKSFEPDSD 142 Query: 255 -------DSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 D L+N LL+IDD+ G + + + LL + P +E Sbjct: 143 AGYSQSFDILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLSTPINE-- 200 Query: 307 SLDPRIRSRL 316 LDPRI+SRL Sbjct: 201 -LDPRIQSRL 209 >gi|147669159|ref|YP_001213977.1| IstB ATP binding domain-containing protein [Dehalococcoides sp. BAV1] gi|146270107|gb|ABQ17099.1| replicative DNA helicase loader DnaI [Dehalococcoides sp. BAV1] Length = 469 Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 25/130 (19%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---- 254 L G GKTHL AIAN + T + +++ AS + D+ + + Sbjct: 127 LVFTGPSGAGKTHLAAAIANRRLS----------TGQPVLYKRASELIDDLKKSFEPDSD 176 Query: 255 -------DSLRNIDLLLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 D L+N LL+IDD+ G + + + LL + P +E Sbjct: 177 AGYSQSFDILKNAPLLVIDDLTVQSGSEWSKEKLDQLLTYRFSQELPTIITLSTPINE-- 234 Query: 307 SLDPRIRSRL 316 LDPRI+SRL Sbjct: 235 -LDPRIQSRL 243 >gi|261855342|ref|YP_003262625.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2] gi|261835811|gb|ACX95578.1| DnaA regulatory inactivator Hda [Halothiobacillus neapolitanus c2] Length = 233 Score = 36.6 bits (83), Expect = 9.5, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIH + GKTHL QA + Q Y+ ++ N + +L Sbjct: 49 LFIHGAQNCGKTHLAQAACFYA--GQQGRSAAYID-----------VKKNPSQLDHMNLS 95 Query: 259 NIDLLLIDDMQFLQGKLIQHEFC--HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 +IDLL++DD+ L G Q EF L+N L + ++ A PP+ P + SRL Sbjct: 96 HIDLLVLDDVDALAGD-DQGEFLLFDLINRLREQEIPLLMTASLPPAACGFQLPDLLSRL 154 Query: 317 QGGVSV 322 G+++ Sbjct: 155 GWGITM 160 >gi|168334045|ref|ZP_02692264.1| AAA ATPase [Epulopiscium sp. 'N.t. morphotype B'] Length = 358 Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust. Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 20/138 (14%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK-- 254 N +F+ + GLGKT L IAN + + V+YL+A F DN N K Sbjct: 211 NMVFV-GTAGLGKTFLCTCIANDLLNK--GFTVLYLSAIQLFKCF-----DNVRFNRKEA 262 Query: 255 --------DSLRNIDLLLIDDMQF-LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 D + DLL+IDD+ L I + ++LNS K + + + +E Sbjct: 263 TDAHRSMFDDIFTADLLIIDDLGTELSTNYINPDLFNVLNSRHLKLKPTIISTNTAITEW 322 Query: 306 -ESLDPRIRSRLQGGVSV 322 + RI SRL G ++ Sbjct: 323 RHNYSERIESRLLGNYAI 340 >gi|300723565|ref|YP_003712870.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus nematophila ATCC 19061] gi|297630087|emb|CBJ90724.1| regulatory factor involved in inactivation of DnaA [Xenorhabdus nematophila ATCC 19061] Length = 221 Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust. Identities = 48/212 (22%), Positives = 94/212 (44%), Gaps = 24/212 (11%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G + +L AA +A SHG + ++ + G GK+HLL A ++ Sbjct: 7 FASFFAGENT--SLLAAIKLAISQSHG------SYIYFWSRDGGGKSHLLHAACTELSQQ 58 Query: 224 QPNLRVVYLTAE-YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFC 281 + + V L YF+ + D + ++ L+ ID+++ + G + + Sbjct: 59 EEAVGYVPLDKRAYFV------------PEVLDGMEHLSLVCIDNIECIAGDQEWEMAIF 106 Query: 282 HLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 +L N +++ + ++ DRPP ++ P + SRL G L + + L+ R Sbjct: 107 NLYNRIVEIGRTCLLITGDRPPRQINLTLPDLASRLDWGQIYKLQPLSDDEKILALQLRA 166 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 + E P+ ++ VL + R + T + LD Sbjct: 167 KLRGFELPE-DVGRFVLKRLDREMQTLFKTLD 197 Searching..................................................done Results from round 2 >gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040304|gb|ACT57100.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 618 bits (1595), Expect = e-175, Method: Composition-based stats. Identities = 502/502 (100%), Positives = 502/502 (100%) Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ Sbjct: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60 Query: 61 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE Sbjct: 61 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120 Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA Sbjct: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR Sbjct: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR Sbjct: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV Sbjct: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK Sbjct: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE Sbjct: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 Query: 481 KMLETDITLKKEVELLKRLISE 502 KMLETDITLKKEVELLKRLISE Sbjct: 481 KMLETDITLKKEVELLKRLISE 502 >gi|315121828|ref|YP_004062317.1| chromosomal replication initiation protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495230|gb|ADR51829.1| chromosomal replication initiation protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 507 Score = 556 bits (1433), Expect = e-156, Method: Composition-based stats. Identities = 432/507 (85%), Positives = 457/507 (90%), Gaps = 5/507 (0%) Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKR-CLEVNCESIFTIVSSRLKNQVGPDVYASWF 59 MQ R ++ CIQ+ND E+ KT N+ D CLE+ CESIF IVSSRLK VGPDVYASWF Sbjct: 1 MQPRGISVCIQKNDDEVPVKTSNMSADTAGCLEIKCESIFKIVSSRLKANVGPDVYASWF 60 Query: 60 QRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSV 119 QRLKFHSV HN+VHLSVPTNFLKAWIKNRYLETITKLFQEE SR+QGVEILVRS AL V Sbjct: 61 QRLKFHSVSHNVVHLSVPTNFLKAWIKNRYLETITKLFQEESSRVQGVEILVRSAALVPV 120 Query: 120 EKTAS----SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 S + S TK S I+TN K+ I GKQTI+PV GSPLDSRFVFSTFI+G SNRV Sbjct: 121 PSEKSIFPATSSTTKSSTISTNTGKTIAITGKQTINPVLGSPLDSRFVFSTFIDGPSNRV 180 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 ALTAAQ+IAEVDSHG TTVRLNPLFIHASVGLGKTHLLQ+IANA+IKRQPNLRVVYLTAE Sbjct: 181 ALTAAQNIAEVDSHGCTTVRLNPLFIHASVGLGKTHLLQSIANAAIKRQPNLRVVYLTAE 240 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV 295 YFMWRFASAIRDN ALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV Sbjct: 241 YFMWRFASAIRDNHALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVV 300 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 AAADRPPSELESLDPRIRSRLQGGV+VPLG HDY+MR SILKNRLAISQKE+P LNINEE Sbjct: 301 AAADRPPSELESLDPRIRSRLQGGVAVPLGSHDYDMRLSILKNRLAISQKENPTLNINEE 360 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQ 415 VL HVART+TTSGRELDGAFNQLVFRHSF PILT EI +ELLSHLV+TGETKKMRIEDIQ Sbjct: 361 VLTHVARTITTSGRELDGAFNQLVFRHSFEPILTVEIVEELLSHLVSTGETKKMRIEDIQ 420 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 RMVAKHYNISRNDLLSNRR+RTVVRPRQ+AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA Sbjct: 421 RMVAKHYNISRNDLLSNRRIRTVVRPRQIAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 480 Query: 476 VRKVEKMLETDITLKKEVELLKRLISE 502 VRKV K+LETDITLKKEVELLKRLISE Sbjct: 481 VRKVGKLLETDITLKKEVELLKRLISE 507 >gi|242237461|ref|YP_002985642.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech703] gi|242129518|gb|ACS83820.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech703] Length = 462 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 254/470 (54%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + V+ V +S + ++ + Sbjct: 63 LNDFCGMDAPLLRFEVGSKPVSAVPVSSVGNSIAAPVPQVRAASLMRPSWDTQSAPTEHT 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|317046239|ref|YP_004113887.1| chromosomal replication initiator protein DnaA [Pantoea sp. At-9b] gi|316947856|gb|ADU67331.1| chromosomal replication initiator protein DnaA [Pantoea sp. At-9b] Length = 466 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 153/474 (32%), Positives = 259/474 (54%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L Sbjct: 4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNSINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTA----SSPSITKLSPINTNISKSPIILGKQT 149 E + E+ R VA + + A S+P+ + P + Sbjct: 63 LNEFCGADVPLLRFEVGTRPVAQVATSQPAMASVSAPAPAQSRPAPAQTLRPSWDSVPAP 122 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 ADVTYRSNVNNRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 178 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 MAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|56418536|ref|YP_145854.1| chromosomal replication initiation protein [Geobacillus kaustophilus HTA426] gi|297528377|ref|YP_003669652.1| chromosomal replication initiator protein DnaA [Geobacillus sp. C56-T3] gi|61212478|sp|Q5L3Z2|DNAA_GEOKA RecName: Full=Chromosomal replication initiator protein DnaA gi|56378378|dbj|BAD74286.1| chromosome replication initiator protein [Geobacillus kaustophilus HTA426] gi|297251629|gb|ADI25075.1| chromosomal replication initiator protein DnaA [Geobacillus sp. C56-T3] Length = 450 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 159/474 (33%), Positives = 269/474 (56%), Gaps = 27/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ V + ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 1 ME-NIHDLWDRVLAEIEQKISKPSFETWLKSTKAHSLRGDTLVIVAPNEFARDWLDSRYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + I G E+ V+ + P+ + + SK + Sbjct: 60 HLIAETIY----TITGEELAVKFIIPPNQDDEE----------LEFQSSKKKQRKPYEET 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 NDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QF Sbjct: 161 HLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 221 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + +I EV++++A + ++ REL+GA ++V S + Sbjct: 281 ETRIAILRK-----KAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 TA++A E L ++ + + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYL Sbjct: 336 TADLAAEALKDIIPSAKPKVITIQDIQRVVGQHFNIKMEDFKAKKRTKSVAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L++ ++ ++ + + Sbjct: 396 SRELTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDTQLQRHIQEIQEKLKQ 449 >gi|294638327|ref|ZP_06716580.1| DNA biosynthesis protein [Edwardsiella tarda ATCC 23685] gi|291088580|gb|EFE21141.1| DNA biosynthesis protein [Edwardsiella tarda ATCC 23685] Length = 467 Score = 524 bits (1349), Expect = e-146, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 252/471 (53%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI-ILGKQTISP 152 + + E+ + A V + + + + P Sbjct: 67 LNDFCGADAPVLRFEVGSKPAAPSVVSHHVGNGASPAPTSVRATSPTRPSWERVAAQPEL 126 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 127 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 181 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 182 LHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 241 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 242 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 301 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 302 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 356 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 357 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 415 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|261417501|ref|YP_003251183.1| chromosomal replication initiation protein [Geobacillus sp. Y412MC61] gi|319765158|ref|YP_004130659.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y412MC52] gi|261373958|gb|ACX76701.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y412MC61] gi|317110024|gb|ADU92516.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y412MC52] Length = 450 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 159/474 (33%), Positives = 269/474 (56%), Gaps = 27/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ V + ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 1 ME-NIHDLWDHVLAEIEQKISKPSFETWLKSTKAHSLRGDTLVIVAPNEFARDWLDSRYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + I G E+ V+ + P+ + + SK + Sbjct: 60 HLIAETIY----TITGEELAVKFIIPPNQDDEE----------LEFQSSKKKQRKPYEET 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 NDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QF Sbjct: 161 HLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 221 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + +I EV++++A + ++ REL+GA ++V S + Sbjct: 281 ETRIAILRK-----KAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 TA++A E L ++ + + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYL Sbjct: 336 TADLAAEALKDIIPSAKPKVITIQDIQRVVGQHFNIKMEDFKAKKRTKSVAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L++ ++ ++ + + Sbjct: 396 SRELTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDTQLQRHIQEIQEKLKQ 449 >gi|170766828|ref|ZP_02901281.1| chromosomal replication initiator protein DnaA [Escherichia albertii TW07627] gi|170124266|gb|EDS93197.1| chromosomal replication initiator protein DnaA [Escherichia albertii TW07627] Length = 467 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 153/475 (32%), Positives = 252/475 (53%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ R V S AS+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTRPVTKTSQAAVASNVTAPAQVAQMQPQRAAPAARSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|329297781|ref|ZP_08255117.1| chromosomal replication initiation protein [Plautia stali symbiont] Length = 467 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 154/475 (32%), Positives = 260/475 (54%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L Sbjct: 4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNSINGL 62 Query: 97 FQEEHS---RIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 E + E+ R V P++ + S+P+ + P + Sbjct: 63 LNEFCGANVPLLRFEVGTRPVVPVAATQPAMASSVSAPAPAENRPAPAQPLRPSWDSVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + + S ++ R F F+EG SN++A AA+ +A+ S Y NPLF++ GLG Sbjct: 123 PANVTYRSNVNKRHNFDNFVEGKSNQLARAAARQVADNPSGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 AMAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|15804296|ref|NP_290335.1| chromosomal replication initiation protein [Escherichia coli O157:H7 EDL933] gi|15833891|ref|NP_312664.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. Sakai] gi|168748582|ref|ZP_02773604.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4113] gi|168753591|ref|ZP_02778598.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4401] gi|168759888|ref|ZP_02784895.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4501] gi|168772263|ref|ZP_02797270.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4196] gi|168779924|ref|ZP_02804931.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4076] gi|168786532|ref|ZP_02811539.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC869] gi|168798737|ref|ZP_02823744.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC508] gi|195936323|ref|ZP_03081705.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. EC4024] gi|208807676|ref|ZP_03250013.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4206] gi|208811867|ref|ZP_03253196.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4045] gi|208819691|ref|ZP_03260011.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4042] gi|209395729|ref|YP_002273228.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4115] gi|217325750|ref|ZP_03441834.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. TW14588] gi|254795705|ref|YP_003080542.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. TW14359] gi|261225855|ref|ZP_05940136.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O157:H7 str. FRIK2000] gi|261258900|ref|ZP_05951433.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O157:H7 str. FRIK966] gi|291285121|ref|YP_003501939.1| Chromosomal replication initiator protein dnaA [Escherichia coli O55:H7 str. CB9615] gi|21362461|sp|Q8XBZ3|DNAA_ECO57 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735804|sp|B5YXA4|DNAA_ECO5E RecName: Full=Chromosomal replication initiator protein DnaA gi|12518541|gb|AAG58899.1|AE005601_5 DNA biosynthesis; initiation of chromosome replication; can be transcription regulator [Escherichia coli O157:H7 str. EDL933] gi|13364112|dbj|BAB38060.1| replication initiation protein DnaA [Escherichia coli O157:H7 str. Sakai] gi|187771794|gb|EDU35638.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4196] gi|188016856|gb|EDU54978.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4113] gi|189002469|gb|EDU71455.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4076] gi|189358966|gb|EDU77385.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4401] gi|189369914|gb|EDU88330.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4501] gi|189373439|gb|EDU91855.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC869] gi|189378776|gb|EDU97192.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC508] gi|208727477|gb|EDZ77078.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4206] gi|208733144|gb|EDZ81831.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4045] gi|208739814|gb|EDZ87496.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4042] gi|209157129|gb|ACI34562.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC4115] gi|209754108|gb|ACI75361.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754110|gb|ACI75362.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754112|gb|ACI75363.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754114|gb|ACI75364.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|209754116|gb|ACI75365.1| 50S ribosomal subunit protein L34 [Escherichia coli] gi|217321971|gb|EEC30395.1| chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. TW14588] gi|254595105|gb|ACT74466.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O157:H7 str. TW14359] gi|290764994|gb|ADD58955.1| Chromosomal replication initiator protein dnaA [Escherichia coli O55:H7 str. CB9615] gi|320191198|gb|EFW65848.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. EC1212] gi|320639427|gb|EFX09042.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. G5101] gi|320644870|gb|EFX13906.1| chromosomal replication initiation protein [Escherichia coli O157:H- str. 493-89] gi|320650134|gb|EFX18630.1| chromosomal replication initiation protein [Escherichia coli O157:H- str. H 2687] gi|320655482|gb|EFX23417.1| chromosomal replication initiation protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661108|gb|EFX28544.1| chromosomal replication initiation protein [Escherichia coli O55:H7 str. USDA 5905] gi|326337249|gb|EGD61084.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1044] gi|326341620|gb|EGD65409.1| Chromosomal replication initiator protein DnaA [Escherichia coli O157:H7 str. 1125] Length = 467 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 151/475 (31%), Positives = 251/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ +SV S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKSVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|82779231|ref|YP_405580.1| chromosomal replication initiation protein [Shigella dysenteriae Sd197] gi|309784248|ref|ZP_07678887.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1617] gi|123769515|sp|Q329B6|DNAA_SHIDS RecName: Full=Chromosomal replication initiator protein DnaA gi|81243379|gb|ABB64089.1| DnaA [Shigella dysenteriae Sd197] gi|308927755|gb|EFP73223.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1617] Length = 467 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 151/475 (31%), Positives = 251/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + L +P Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPALVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|239825585|ref|YP_002948209.1| chromosomal replication initiation protein [Geobacillus sp. WCH70] gi|259645252|sp|C5D327|DNAA_GEOSW RecName: Full=Chromosomal replication initiator protein DnaA gi|239805878|gb|ACS22943.1| chromosomal replication initiator protein DnaA [Geobacillus sp. WCH70] Length = 450 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 159/474 (33%), Positives = 267/474 (56%), Gaps = 27/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ V ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 1 ME-NIHDLWNRVLGEIEKKISKPSFETWLKSTKAHSLRGDTLVIIAPNEFARDWLDSRYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + + I G E+L++ + P+ S + Sbjct: 60 RLIAETIYD----ITGEELLIKFITPPN----------QSEDDFEFQRSSKKHRKPYEES 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 TDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QF Sbjct: 161 HLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 221 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + +I EV++++A + ++ REL+GA ++V S + Sbjct: 281 ETRIAILRK-----KAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 TA++A E L ++ + + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYL Sbjct: 336 TADLAAEALKDIIPSTKPKVITIQDIQRVVGQHFNIKLEDFKAKKRTKSVAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K ++ ++ + + Sbjct: 396 SRELTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDAQLQKHIKEIEEKLKQ 449 >gi|271498579|ref|YP_003331604.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech586] gi|270342134|gb|ACZ74899.1| chromosomal replication initiator protein DnaA [Dickeya dadantii Ech586] Length = 462 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 250/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYINNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + + ++ + + Sbjct: 63 LNDFCGMDAPLLRFEVGSKPATPVVAPVGNHNATVAAPQTRVASPVRPSWETPSAPAEHT 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|320666234|gb|EFX33240.1| chromosomal replication initiation protein [Escherichia coli O157:H7 str. LSU-61] Length = 467 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 151/475 (31%), Positives = 251/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ +SV S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKSVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEERLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|238765484|ref|ZP_04626403.1| Chromosomal replication initiator protein dnaA [Yersinia kristensenii ATCC 33638] gi|238696308|gb|EEP89106.1| Chromosomal replication initiator protein dnaA [Yersinia kristensenii ATCC 33638] Length = 463 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 252/471 (53%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI-ILGKQTISP 152 + + E+ + ++ ++P+ + P Sbjct: 63 LNDFCGGEVPLLRFEVGSKPAVRAVHSHPVTASVSAPVAPVTRSAPVRPSWDSSPAQPEH 122 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N I R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIIARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|16131570|ref|NP_418157.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] gi|74314016|ref|YP_312435.1| chromosomal replication initiation protein [Shigella sonnei Ss046] gi|89110311|ref|AP_004091.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. W3110] gi|91213224|ref|YP_543210.1| chromosomal replication initiation protein [Escherichia coli UTI89] gi|157155055|ref|YP_001465187.1| chromosomal replication initiation protein [Escherichia coli E24377A] gi|157163182|ref|YP_001460500.1| chromosomal replication initiation protein [Escherichia coli HS] gi|170679718|ref|YP_001746030.1| chromosomal replication initiation protein [Escherichia coli SMS-3-5] gi|188495189|ref|ZP_03002459.1| chromosomal replication initiator protein DnaA [Escherichia coli 53638] gi|191165774|ref|ZP_03027612.1| chromosomal replication initiator protein DnaA [Escherichia coli B7A] gi|191170447|ref|ZP_03032000.1| chromosomal replication initiator protein DnaA [Escherichia coli F11] gi|193063799|ref|ZP_03044886.1| chromosomal replication initiator protein DnaA [Escherichia coli E22] gi|193069150|ref|ZP_03050107.1| chromosomal replication initiator protein DnaA [Escherichia coli E110019] gi|194428054|ref|ZP_03060598.1| chromosomal replication initiator protein DnaA [Escherichia coli B171] gi|194431303|ref|ZP_03063596.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1012] gi|194435690|ref|ZP_03067793.1| chromosomal replication initiator protein DnaA [Escherichia coli 101-1] gi|209921179|ref|YP_002295263.1| chromosomal replication initiation protein [Escherichia coli SE11] gi|215489042|ref|YP_002331473.1| chromosomal replication initiation protein [Escherichia coli O127:H6 str. E2348/69] gi|218556267|ref|YP_002389181.1| chromosomal replication initiation protein [Escherichia coli IAI1] gi|218560777|ref|YP_002393690.1| chromosomal replication initiation protein [Escherichia coli S88] gi|218691990|ref|YP_002400202.1| chromosomal replication initiation protein [Escherichia coli ED1a] gi|218697424|ref|YP_002405091.1| chromosomal replication initiation protein [Escherichia coli 55989] gi|218702551|ref|YP_002410180.1| chromosomal replication initiation protein [Escherichia coli IAI39] gi|218707348|ref|YP_002414867.1| chromosomal replication initiation protein [Escherichia coli UMN026] gi|237703502|ref|ZP_04533983.1| chromosomal replication initiation protein [Escherichia sp. 3_2_53FAA] gi|238902792|ref|YP_002928588.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli BW2952] gi|253771436|ref|YP_003034267.1| chromosomal replication initiation protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038919|ref|ZP_04872971.1| chromosomal replication initiation protein [Escherichia sp. 1_1_43] gi|254163653|ref|YP_003046761.1| chromosomal replication initiation protein [Escherichia coli B str. REL606] gi|256021280|ref|ZP_05435145.1| chromosomal replication initiation protein [Shigella sp. D9] gi|256025567|ref|ZP_05439432.1| chromosomal replication initiation protein [Escherichia sp. 4_1_40B] gi|260846513|ref|YP_003224291.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O103:H2 str. 12009] gi|293407342|ref|ZP_06651264.1| dnaA [Escherichia coli FVEC1412] gi|293417175|ref|ZP_06659802.1| chromosomal replication initiator protein DnaA [Escherichia coli B185] gi|293464026|ref|ZP_06664440.1| chromosomal replication initiator protein DnaA [Escherichia coli B088] gi|298383083|ref|ZP_06992678.1| chromosomal replication initiator protein dnaA [Escherichia coli FVEC1302] gi|301028495|ref|ZP_07191735.1| replication initiator protein DnaA [Escherichia coli MS 196-1] gi|306815945|ref|ZP_07450083.1| chromosomal replication initiation protein [Escherichia coli NC101] gi|307140402|ref|ZP_07499758.1| chromosomal replication initiation protein [Escherichia coli H736] gi|307313229|ref|ZP_07592854.1| chromosomal replication initiator protein DnaA [Escherichia coli W] gi|312967888|ref|ZP_07782100.1| chromosomal replication initiator protein DnaA [Escherichia coli 2362-75] gi|331660044|ref|ZP_08360982.1| replication initiation protein DnaA [Escherichia coli TA206] gi|331665352|ref|ZP_08366253.1| replication initiation protein DnaA [Escherichia coli TA143] gi|331670546|ref|ZP_08371385.1| replication initiation protein DnaA [Escherichia coli TA271] gi|331685426|ref|ZP_08386012.1| replication initiation protein DnaA [Escherichia coli H299] gi|332282511|ref|ZP_08394924.1| chromosomal replication initiation protein [Shigella sp. D9] gi|399394|sp|P03004|DNAA_ECOLI RecName: Full=Chromosomal replication initiator protein DnaA gi|123387748|sp|Q1R4N5|DNAA_ECOUT RecName: Full=Chromosomal replication initiator protein DnaA gi|123745913|sp|Q3YWB2|DNAA_SHISS RecName: Full=Chromosomal replication initiator protein DnaA gi|167016899|sp|A7ZTQ8|DNAA_ECO24 RecName: Full=Chromosomal replication initiator protein DnaA gi|167016900|sp|A8A6G3|DNAA_ECOHS RecName: Full=Chromosomal replication initiator protein DnaA gi|226735803|sp|B7MGC3|DNAA_ECO45 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735805|sp|B7NR04|DNAA_ECO7I RecName: Full=Chromosomal replication initiator protein DnaA gi|226735806|sp|B7M553|DNAA_ECO8A RecName: Full=Chromosomal replication initiator protein DnaA gi|226735807|sp|B7NF19|DNAA_ECOLU RecName: Full=Chromosomal replication initiator protein DnaA gi|226735808|sp|B6I3T5|DNAA_ECOSE RecName: Full=Chromosomal replication initiator protein DnaA gi|226735809|sp|B1LL27|DNAA_ECOSM RecName: Full=Chromosomal replication initiator protein DnaA gi|254777900|sp|B7UMG9|DNAA_ECO27 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777901|sp|B7L846|DNAA_ECO55 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777902|sp|B7N2E7|DNAA_ECO81 RecName: Full=Chromosomal replication initiator protein DnaA gi|259645248|sp|C4ZYX9|DNAA_ECOBW RecName: Full=Chromosomal replication initiator protein DnaA gi|145760|gb|AAB59149.1| DnaA protein (gtg start codon) [Escherichia coli] gi|2367267|gb|AAC76725.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 substr. MG1655] gi|73857493|gb|AAZ90200.1| DnaA [Shigella sonnei Ss046] gi|85676342|dbj|BAE77592.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli str. K12 substr. W3110] gi|91074798|gb|ABE09679.1| chromosomal replication initiator protein DnaA [Escherichia coli UTI89] gi|157068862|gb|ABV08117.1| chromosomal replication initiator protein DnaA [Escherichia coli HS] gi|157077085|gb|ABV16793.1| chromosomal replication initiator protein DnaA [Escherichia coli E24377A] gi|170517436|gb|ACB15614.1| chromosomal replication initiator protein DnaA [Escherichia coli SMS-3-5] gi|188490388|gb|EDU65491.1| chromosomal replication initiator protein DnaA [Escherichia coli 53638] gi|190904098|gb|EDV63809.1| chromosomal replication initiator protein DnaA [Escherichia coli B7A] gi|190909255|gb|EDV68841.1| chromosomal replication initiator protein DnaA [Escherichia coli F11] gi|192930514|gb|EDV83121.1| chromosomal replication initiator protein DnaA [Escherichia coli E22] gi|192957474|gb|EDV87920.1| chromosomal replication initiator protein DnaA [Escherichia coli E110019] gi|194413812|gb|EDX30090.1| chromosomal replication initiator protein DnaA [Escherichia coli B171] gi|194420758|gb|EDX36834.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 1012] gi|194425233|gb|EDX41217.1| chromosomal replication initiator protein DnaA [Escherichia coli 101-1] gi|209914438|dbj|BAG79512.1| DNA replication initiator protein DnaA [Escherichia coli SE11] gi|215267114|emb|CAS11561.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O127:H6 str. E2348/69] gi|218354156|emb|CAV00757.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli 55989] gi|218363036|emb|CAR00675.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli IAI1] gi|218367546|emb|CAR05331.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli S88] gi|218372537|emb|CAR20412.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli IAI39] gi|218429554|emb|CAR10518.2| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli ED1a] gi|218434445|emb|CAR15373.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli UMN026] gi|222035416|emb|CAP78161.1| chromosomal replication initiator protein dnaA [Escherichia coli LF82] gi|226838884|gb|EEH70911.1| chromosomal replication initiation protein [Escherichia sp. 1_1_43] gi|226902766|gb|EEH89025.1| chromosomal replication initiation protein [Escherichia sp. 3_2_53FAA] gi|238860149|gb|ACR62147.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli BW2952] gi|242379241|emb|CAQ34046.1| chromosomal replication initiator protein DnaA; DNA-binding transcriptional dual regulator [Escherichia coli BL21(DE3)] gi|253322480|gb|ACT27082.1| chromosomal replication initiator protein DnaA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975554|gb|ACT41225.1| chromosomal replication initiation protein [Escherichia coli B str. REL606] gi|253979710|gb|ACT45380.1| chromosomal replication initiation protein [Escherichia coli BL21(DE3)] gi|257761660|dbj|BAI33157.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O103:H2 str. 12009] gi|260447280|gb|ACX37702.1| chromosomal replication initiator protein DnaA [Escherichia coli DH1] gi|281180756|dbj|BAI57086.1| DNA replication initiator protein DnaA [Escherichia coli SE15] gi|284923785|emb|CBG36883.1| chromosomal replication initiator protein [Escherichia coli 042] gi|291321658|gb|EFE61094.1| chromosomal replication initiator protein DnaA [Escherichia coli B088] gi|291425633|gb|EFE98669.1| dnaA [Escherichia coli FVEC1412] gi|291431206|gb|EFF04199.1| chromosomal replication initiator protein DnaA [Escherichia coli B185] gi|294493541|gb|ADE92297.1| chromosomal replication initiator protein DnaA [Escherichia coli IHE3034] gi|298276919|gb|EFI18437.1| chromosomal replication initiator protein dnaA [Escherichia coli FVEC1302] gi|299878457|gb|EFI86668.1| replication initiator protein DnaA [Escherichia coli MS 196-1] gi|305850341|gb|EFM50798.1| chromosomal replication initiation protein [Escherichia coli NC101] gi|306906912|gb|EFN37421.1| chromosomal replication initiator protein DnaA [Escherichia coli W] gi|307555842|gb|ADN48617.1| chromosomal replication initiator protein DnaA [Escherichia coli ABU 83972] gi|307628778|gb|ADN73082.1| chromosomal replication initiation protein [Escherichia coli UM146] gi|309704149|emb|CBJ03496.1| chromosomal replication initiator protein [Escherichia coli ETEC H10407] gi|312287449|gb|EFR15357.1| chromosomal replication initiator protein DnaA [Escherichia coli 2362-75] gi|312948269|gb|ADR29096.1| chromosomal replication initiation protein [Escherichia coli O83:H1 str. NRG 857C] gi|315063008|gb|ADT77335.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli W] gi|320174824|gb|EFW49947.1| Chromosomal replication initiator protein DnaA [Shigella dysenteriae CDC 74-1112] gi|320193752|gb|EFW68385.1| Chromosomal replication initiator protein DnaA [Escherichia coli WV_060327] gi|323164686|gb|EFZ50481.1| chromosomal replication initiator protein DnaA [Shigella sonnei 53G] gi|323376398|gb|ADX48666.1| chromosomal replication initiator protein DnaA [Escherichia coli KO11] gi|323934947|gb|EGB31325.1| chromosomal replication initiator protein DnaA [Escherichia coli E1520] gi|323939235|gb|EGB35448.1| chromosomal replication initiator protein DnaA [Escherichia coli E482] gi|323944174|gb|EGB40254.1| chromosomal replication initiator protein DnaA [Escherichia coli H120] gi|323949945|gb|EGB45829.1| chromosomal replication initiator protein DnaA [Escherichia coli H252] gi|323955004|gb|EGB50782.1| chromosomal replication initiator protein DnaA [Escherichia coli H263] gi|323959767|gb|EGB55417.1| chromosomal replication initiator protein DnaA [Escherichia coli H489] gi|323971179|gb|EGB66425.1| chromosomal replication initiator protein DnaA [Escherichia coli TA007] gi|324115946|gb|EGC09872.1| chromosomal replication initiator protein DnaA [Escherichia coli E1167] gi|330908019|gb|EGH36538.1| chromosomal replication initiator protein DnaA [Escherichia coli AA86] gi|331053259|gb|EGI25292.1| replication initiation protein DnaA [Escherichia coli TA206] gi|331057862|gb|EGI29848.1| replication initiation protein DnaA [Escherichia coli TA143] gi|331062608|gb|EGI34528.1| replication initiation protein DnaA [Escherichia coli TA271] gi|331077797|gb|EGI49009.1| replication initiation protein DnaA [Escherichia coli H299] gi|332084015|gb|EGI89222.1| chromosomal replication initiator protein DnaA [Shigella dysenteriae 155-74] gi|332084892|gb|EGI90075.1| chromosomal replication initiator protein DnaA [Shigella boydii 5216-82] gi|332089364|gb|EGI94468.1| chromosomal replication initiator protein DnaA [Shigella boydii 3594-74] gi|332104863|gb|EGJ08209.1| chromosomal replication initiation protein [Shigella sp. D9] gi|332345693|gb|AEE59027.1| chromosomal replication initiator protein DnaA [Escherichia coli UMNK88] gi|332997868|gb|EGK17476.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-272] gi|333013663|gb|EGK33028.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-227] Length = 467 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 250/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|238783048|ref|ZP_04627075.1| Chromosomal replication initiator protein dnaA [Yersinia bercovieri ATCC 43970] gi|238716049|gb|EEQ08034.1| Chromosomal replication initiator protein dnaA [Yersinia bercovieri ATCC 43970] Length = 463 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 147/471 (31%), Positives = 253/471 (53%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI-ILGKQTISP 152 + + E+ + + ++ ++P+ + P Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAVRAAHSHPVTASVSAPVAPVTRSAPVRPSWDSSPAQPEH 122 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|170018062|ref|YP_001723016.1| chromosomal replication initiation protein [Escherichia coli ATCC 8739] gi|189044638|sp|B1IYP2|DNAA_ECOLC RecName: Full=Chromosomal replication initiator protein DnaA gi|169752990|gb|ACA75689.1| chromosomal replication initiator protein DnaA [Escherichia coli ATCC 8739] Length = 467 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 251/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P + Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSMRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|117625978|ref|YP_859301.1| chromosomal replication initiation protein [Escherichia coli APEC O1] gi|227883923|ref|ZP_04001728.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli 83972] gi|293413156|ref|ZP_06655822.1| chromosomal replication initiator protein DnaA [Escherichia coli B354] gi|300815051|ref|ZP_07095276.1| replication initiator protein DnaA [Escherichia coli MS 107-1] gi|300824313|ref|ZP_07104429.1| replication initiator protein DnaA [Escherichia coli MS 119-7] gi|300896031|ref|ZP_07114592.1| replication initiator protein DnaA [Escherichia coli MS 198-1] gi|300903023|ref|ZP_07120965.1| replication initiator protein DnaA [Escherichia coli MS 84-1] gi|300917468|ref|ZP_07134128.1| replication initiator protein DnaA [Escherichia coli MS 115-1] gi|300925526|ref|ZP_07141401.1| replication initiator protein DnaA [Escherichia coli MS 182-1] gi|300932333|ref|ZP_07147601.1| replication initiator protein DnaA [Escherichia coli MS 187-1] gi|300947537|ref|ZP_07161714.1| replication initiator protein DnaA [Escherichia coli MS 116-1] gi|300956292|ref|ZP_07168594.1| replication initiator protein DnaA [Escherichia coli MS 175-1] gi|300983653|ref|ZP_07176694.1| replication initiator protein DnaA [Escherichia coli MS 200-1] gi|300984540|ref|ZP_07177030.1| replication initiator protein DnaA [Escherichia coli MS 45-1] gi|301020909|ref|ZP_07184964.1| replication initiator protein DnaA [Escherichia coli MS 69-1] gi|301047520|ref|ZP_07194596.1| replication initiator protein DnaA [Escherichia coli MS 185-1] gi|301305952|ref|ZP_07212034.1| replication initiator protein DnaA [Escherichia coli MS 124-1] gi|301325006|ref|ZP_07218556.1| replication initiator protein DnaA [Escherichia coli MS 78-1] gi|301644374|ref|ZP_07244375.1| replication initiator protein DnaA [Escherichia coli MS 146-1] gi|309795749|ref|ZP_07690164.1| replication initiator protein DnaA [Escherichia coli MS 145-7] gi|331644426|ref|ZP_08345555.1| replication initiation protein DnaA [Escherichia coli H736] gi|331649528|ref|ZP_08350614.1| replication initiation protein DnaA [Escherichia coli M605] gi|331655362|ref|ZP_08356361.1| replication initiation protein DnaA [Escherichia coli M718] gi|331675192|ref|ZP_08375945.1| replication initiation protein DnaA [Escherichia coli TA280] gi|331679800|ref|ZP_08380470.1| replication initiation protein DnaA [Escherichia coli H591] gi|115515102|gb|ABJ03177.1| chromosomal replication initiation protein [Escherichia coli APEC O1] gi|227839201|gb|EEJ49667.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli 83972] gi|291468289|gb|EFF10784.1| chromosomal replication initiator protein DnaA [Escherichia coli B354] gi|300300580|gb|EFJ56965.1| replication initiator protein DnaA [Escherichia coli MS 185-1] gi|300306876|gb|EFJ61396.1| replication initiator protein DnaA [Escherichia coli MS 200-1] gi|300316879|gb|EFJ66663.1| replication initiator protein DnaA [Escherichia coli MS 175-1] gi|300360091|gb|EFJ75961.1| replication initiator protein DnaA [Escherichia coli MS 198-1] gi|300398376|gb|EFJ81914.1| replication initiator protein DnaA [Escherichia coli MS 69-1] gi|300404929|gb|EFJ88467.1| replication initiator protein DnaA [Escherichia coli MS 84-1] gi|300408373|gb|EFJ91911.1| replication initiator protein DnaA [Escherichia coli MS 45-1] gi|300415272|gb|EFJ98582.1| replication initiator protein DnaA [Escherichia coli MS 115-1] gi|300418366|gb|EFK01677.1| replication initiator protein DnaA [Escherichia coli MS 182-1] gi|300452874|gb|EFK16494.1| replication initiator protein DnaA [Escherichia coli MS 116-1] gi|300459919|gb|EFK23412.1| replication initiator protein DnaA [Escherichia coli MS 187-1] gi|300523200|gb|EFK44269.1| replication initiator protein DnaA [Escherichia coli MS 119-7] gi|300531943|gb|EFK53005.1| replication initiator protein DnaA [Escherichia coli MS 107-1] gi|300838803|gb|EFK66563.1| replication initiator protein DnaA [Escherichia coli MS 124-1] gi|300848100|gb|EFK75860.1| replication initiator protein DnaA [Escherichia coli MS 78-1] gi|301077315|gb|EFK92121.1| replication initiator protein DnaA [Escherichia coli MS 146-1] gi|308120628|gb|EFO57890.1| replication initiator protein DnaA [Escherichia coli MS 145-7] gi|315254611|gb|EFU34579.1| replication initiator protein DnaA [Escherichia coli MS 85-1] gi|315285493|gb|EFU44938.1| replication initiator protein DnaA [Escherichia coli MS 110-3] gi|315292860|gb|EFU52212.1| replication initiator protein DnaA [Escherichia coli MS 153-1] gi|315296900|gb|EFU56188.1| replication initiator protein DnaA [Escherichia coli MS 16-3] gi|324008038|gb|EGB77257.1| replication initiator protein DnaA [Escherichia coli MS 57-2] gi|324012737|gb|EGB81956.1| replication initiator protein DnaA [Escherichia coli MS 60-1] gi|324018430|gb|EGB87649.1| replication initiator protein DnaA [Escherichia coli MS 117-3] gi|331036720|gb|EGI08946.1| replication initiation protein DnaA [Escherichia coli H736] gi|331042026|gb|EGI14170.1| replication initiation protein DnaA [Escherichia coli M605] gi|331047377|gb|EGI19455.1| replication initiation protein DnaA [Escherichia coli M718] gi|331067637|gb|EGI39039.1| replication initiation protein DnaA [Escherichia coli TA280] gi|331072972|gb|EGI44297.1| replication initiation protein DnaA [Escherichia coli H591] Length = 471 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 250/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 67 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 126 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|300940887|ref|ZP_07155414.1| replication initiator protein DnaA [Escherichia coli MS 21-1] gi|300454368|gb|EFK17861.1| replication initiator protein DnaA [Escherichia coli MS 21-1] Length = 471 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 250/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 67 LTSFCGADAPQLRFEVGTKPVTQTPQAVVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 126 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|187731749|ref|YP_001882464.1| chromosomal replication initiation protein [Shigella boydii CDC 3083-94] gi|226735848|sp|B2TUS6|DNAA_SHIB3 RecName: Full=Chromosomal replication initiator protein DnaA gi|187428741|gb|ACD08015.1| chromosomal replication initiator protein DnaA [Shigella boydii CDC 3083-94] Length = 467 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 250/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDILLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|251787653|ref|YP_003002374.1| chromosomal replication initiator protein DnaA [Dickeya zeae Ech1591] gi|247536274|gb|ACT04895.1| chromosomal replication initiator protein DnaA [Dickeya zeae Ech1591] Length = 464 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 149/472 (31%), Positives = 252/472 (53%), Gaps = 19/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYINNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK--SPIILGKQTIS 151 + + E+ + +V S + +P S Sbjct: 63 LNDFCGMDAPLLRFEVGSKPATPAAVSAGNGSHNAAVAAPQARVASPVRPSWETPVAPTE 122 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTH Sbjct: 123 HTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTH 177 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF 237 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE 297 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 TRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSIT 352 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+ Sbjct: 353 IDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALA 411 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 KELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 463 >gi|238797845|ref|ZP_04641337.1| Chromosomal replication initiator protein dnaA [Yersinia mollaretii ATCC 43969] gi|238718261|gb|EEQ10085.1| Chromosomal replication initiator protein dnaA [Yersinia mollaretii ATCC 43969] Length = 463 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 147/471 (31%), Positives = 253/471 (53%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI-ILGKQTISP 152 + + E+ + + ++ ++P+ + P Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAVRAAHSHPVTASVSAPVAPVTRSAPVRPSWDSSPAQPEH 122 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|260857887|ref|YP_003231778.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O26:H11 str. 11368] gi|257756536|dbj|BAI28038.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O26:H11 str. 11368] Length = 467 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 250/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNIPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|138893680|ref|YP_001124133.1| chromosomal replication initiation protein [Geobacillus thermodenitrificans NG80-2] gi|166201885|sp|A4IJ84|DNAA_GEOTN RecName: Full=Chromosomal replication initiator protein DnaA gi|134265193|gb|ABO65388.1| DnaA [Geobacillus thermodenitrificans NG80-2] Length = 450 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 156/474 (32%), Positives = 262/474 (55%), Gaps = 27/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ V ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 1 ME-NIHDLWDRVLGEIERKISKPSFETWLKSTKAHSLRGDTLVIVAPNEFARDWLDSRYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + V+ ++ P + S + Sbjct: 60 HLIAETIYAITGEELAVKFII--------------PPNQADEKLELPSSAKKQRKPYEEA 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 NDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QF Sbjct: 161 HLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 221 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + +I EV++++A + ++ REL+GA ++V S + Sbjct: 281 ETRIAILRK-----KAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 TA++A E L ++ + + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYL Sbjct: 336 TADLAAEALKDIIPSAKPKVITIQDIQRVVGQHFNIKLEDFKAKKRTKSVAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K ++ ++ + + Sbjct: 396 SRELTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDTQLQKHLKEIQEKLKQ 449 >gi|30065010|ref|NP_839181.1| chromosomal replication initiation protein [Shigella flexneri 2a str. 2457T] gi|30043271|gb|AAP18992.1| replication initiation protein DnaA [Shigella flexneri 2a str. 2457T] gi|281603071|gb|ADA76055.1| Chromosomal replication initiator protein dnaA [Shigella flexneri 2002017] gi|313647710|gb|EFS12158.1| chromosomal replication initiator protein DnaA [Shigella flexneri 2a str. 2457T] gi|332750694|gb|EGJ81102.1| chromosomal replication initiator protein DnaA [Shigella flexneri 4343-70] gi|332751785|gb|EGJ82183.1| chromosomal replication initiator protein DnaA [Shigella flexneri 2747-71] gi|332997470|gb|EGK17086.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-218] gi|333013259|gb|EGK32632.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-304] Length = 467 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 249/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAACQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|295402123|ref|ZP_06812082.1| chromosomal replication initiator protein DnaA [Geobacillus thermoglucosidasius C56-YS93] gi|312109152|ref|YP_003987468.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y4.1MC1] gi|294975806|gb|EFG51425.1| chromosomal replication initiator protein DnaA [Geobacillus thermoglucosidasius C56-YS93] gi|311214253|gb|ADP72857.1| chromosomal replication initiator protein DnaA [Geobacillus sp. Y4.1MC1] Length = 450 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 155/474 (32%), Positives = 261/474 (55%), Gaps = 27/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ V ++ ++ + +W + K HS+ + + + P F + W+ +RY Sbjct: 1 ME-NIHDLWNRVLGEIEKKISKPSFETWLKSTKAHSLRGDTLVIVAPNEFARDWLDSRYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + + V+ ++ P S + Sbjct: 60 RLIAETIYDITGEELSVKFII--------------PPNQSEDDFELQQSLKKQRKSYEEP 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 ADFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QF Sbjct: 161 HLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 221 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + +I EV++++A + ++ REL+GA ++V S + Sbjct: 281 ETRIAILRK-----KAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I+DIQR+V +H+NI D + +R ++V PRQ+AMYL Sbjct: 336 NADLAAEALKDIIPNSKPKVITIQDIQRVVGQHFNIKLEDFKAKKRTKSVAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD+ L+K ++ ++ + + Sbjct: 396 SRELTDCSLPKIGDEFGGRDHTTVIHAHEKISKLLQTDVQLQKHIKEIQEKLKQ 449 >gi|323965763|gb|EGB61214.1| chromosomal replication initiator protein DnaA [Escherichia coli M863] gi|323975231|gb|EGB70335.1| chromosomal replication initiator protein DnaA [Escherichia coli TW10509] gi|327250845|gb|EGE62547.1| chromosomal replication initiator protein DnaA [Escherichia coli STEC_7v] Length = 467 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 250/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAHAQPQRVAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|227328545|ref|ZP_03832569.1| chromosomal replication initiation protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 465 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 154/474 (32%), Positives = 260/474 (54%), Gaps = 22/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINVL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + G + LV++V+ P+ + + S+ + P+ T + Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQAVSQPA-QSHHNPVSVARQQPVRTAPVRPSWDNSPVQ 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 122 AEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 177 THLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 236 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 237 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 297 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRS 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 352 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|322830734|ref|YP_004210761.1| chromosomal replication initiator protein DnaA [Rahnella sp. Y9602] gi|321165935|gb|ADW71634.1| chromosomal replication initiator protein DnaA [Rahnella sp. Y9602] Length = 463 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 151/471 (32%), Positives = 253/471 (53%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + V + A+S S I P + Sbjct: 63 LNDFCGTDAPLLRFEVGSKPVIQRVSQPVAASVSSQAAPAIPRLAPSRPSWDSSPVQPEL 122 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|82546034|ref|YP_409981.1| chromosomal replication initiation protein [Shigella boydii Sb227] gi|123769372|sp|Q31UV5|DNAA_SHIBS RecName: Full=Chromosomal replication initiator protein DnaA gi|81247445|gb|ABB68153.1| DnaA [Shigella boydii Sb227] Length = 467 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 250/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTIHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|262367726|gb|ACY64283.1| chromosomal replication initiator protein [Yersinia pestis D182038] Length = 462 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 251/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + +E+ + A +S S + + Sbjct: 63 LNDFCGTEVPLLRIEVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDNSPAQPELS 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|324111599|gb|EGC05580.1| chromosomal replication initiator protein DnaA [Escherichia fergusonii B253] gi|325499509|gb|EGC97368.1| chromosomal replication initiation protein [Escherichia fergusonii ECD227] Length = 466 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 149/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS-- 151 E+ + V +++ + + + + + G + Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTLKAAASNTVAPAQAAQVQPQRAAPSTRSGWDNVPAP 122 Query: 152 --PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 178 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|218551232|ref|YP_002385024.1| chromosomal replication initiation protein [Escherichia fergusonii ATCC 35469] gi|218358774|emb|CAQ91431.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia fergusonii ATCC 35469] Length = 470 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 149/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS-- 151 E+ + V +++ + + + + + G + Sbjct: 67 LTSFCGADAPQLRFEVGTKPVTQTLKAAASNTVAPAQAAQVQPQRAAPSTRSGWDNVPAP 126 Query: 152 --PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 127 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 181 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 182 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 241 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 242 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 301 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 356 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 415 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 469 >gi|123444342|ref|YP_001008307.1| chromosomal replication initiation protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163521|ref|YP_004300098.1| chromosomal replication initiation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166215369|sp|A1JT80|DNAA_YERE8 RecName: Full=Chromosomal replication initiator protein DnaA gi|122091303|emb|CAL14189.1| chromosomal replication initiator protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318608025|emb|CBY29523.1| chromosomal replication initiator protein DNAA [Yersinia enterocolitica subsp. palearctica Y11] gi|325667751|gb|ADZ44395.1| chromosomal replication initiation protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330861746|emb|CBX71920.1| chromosomal replication initiator protein dnaA [Yersinia enterocolitica W22703] Length = 462 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 249/470 (52%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + +S S + + Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAVRAHSHPVTASVSAPVAPVTRSAPVRPSWDSSPAQPELS 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|260870433|ref|YP_003236835.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O111:H- str. 11128] gi|257766789|dbj|BAI38284.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Escherichia coli O111:H- str. 11128] Length = 467 Score = 521 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 151/475 (31%), Positives = 250/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNIPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL I + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----IKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|238787828|ref|ZP_04631625.1| Chromosomal replication initiator protein dnaA [Yersinia frederiksenii ATCC 33641] gi|238724171|gb|EEQ15814.1| Chromosomal replication initiator protein dnaA [Yersinia frederiksenii ATCC 33641] Length = 462 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 249/470 (52%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + +S S + + Sbjct: 63 LNDFCGAEVPLLRFEVGSKPTVRAQSHPVTASVSAPVAPVTRSAPMRPSWDSSPVQPELS 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|227113116|ref|ZP_03826772.1| chromosomal replication initiation protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 465 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 153/474 (32%), Positives = 260/474 (54%), Gaps = 22/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINVL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + G + LV++V+ P+ + + S+ + P+ + + Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQAVSQPA-QSHHNPVSVARQQPVRSAPVRPSWDNSPVQ 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 122 AEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 177 THLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 236 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 237 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 297 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRS 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 352 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|16767123|ref|NP_462738.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56415711|ref|YP_152786.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161616956|ref|YP_001590921.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167548872|ref|ZP_02342631.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992432|ref|ZP_02573530.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168233393|ref|ZP_02658451.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235478|ref|ZP_02660536.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168260377|ref|ZP_02682350.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464831|ref|ZP_02698723.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818302|ref|ZP_02830302.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194442253|ref|YP_002043088.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448643|ref|YP_002047871.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194470761|ref|ZP_03076745.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194736495|ref|YP_002116782.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197248955|ref|YP_002148776.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197364639|ref|YP_002144276.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200388152|ref|ZP_03214764.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204928789|ref|ZP_03219988.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|238913091|ref|ZP_04656928.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|20141364|sp|P35891|DNAA_SALTY RecName: Full=Chromosomal replication initiator protein DnaA gi|71151803|sp|Q5PKU6|DNAA_SALPA RecName: Full=Chromosomal replication initiator protein DnaA gi|189044603|sp|A9MX77|DNAA_SALPB RecName: Full=Chromosomal replication initiator protein DnaA gi|226735838|sp|B5EYX2|DNAA_SALA4 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735842|sp|B4TAU9|DNAA_SALHS RecName: Full=Chromosomal replication initiator protein DnaA gi|226735843|sp|B4SYA8|DNAA_SALNS RecName: Full=Chromosomal replication initiator protein DnaA gi|226735844|sp|B5BIL4|DNAA_SALPK RecName: Full=Chromosomal replication initiator protein DnaA gi|226735845|sp|B4TN07|DNAA_SALSV RecName: Full=Chromosomal replication initiator protein DnaA gi|16422412|gb|AAL22697.1| DNA replication initiator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|56129968|gb|AAV79474.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161366320|gb|ABX70088.1| hypothetical protein SPAB_04777 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194400916|gb|ACF61138.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406947|gb|ACF67166.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457125|gb|EDX45964.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711997|gb|ACF91218.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195632396|gb|EDX50880.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096116|emb|CAR61712.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212658|gb|ACH50055.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197291232|gb|EDY30584.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199605250|gb|EDZ03795.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322222|gb|EDZ07420.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205325509|gb|EDZ13348.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329368|gb|EDZ16132.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205332569|gb|EDZ19333.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344670|gb|EDZ31434.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350503|gb|EDZ37134.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261248979|emb|CBG26836.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996124|gb|ACY91009.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160371|emb|CBW19896.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914968|dbj|BAJ38942.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320088259|emb|CBY98021.1| Chromosomal replication initiator protein dnaA [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225556|gb|EFX50611.1| Chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617249|gb|EFY14154.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619063|gb|EFY15949.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625130|gb|EFY21958.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630181|gb|EFY26952.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634393|gb|EFY31127.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635278|gb|EFY31993.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642898|gb|EFY39482.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647622|gb|EFY44109.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650572|gb|EFY46979.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656402|gb|EFY52694.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661582|gb|EFY57805.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661663|gb|EFY57882.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668223|gb|EFY64381.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672848|gb|EFY68956.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674971|gb|EFY71057.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683661|gb|EFY79674.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687737|gb|EFY83706.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192048|gb|EFZ77283.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200530|gb|EFZ85608.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204956|gb|EFZ89941.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206699|gb|EFZ91656.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211771|gb|EFZ96604.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218633|gb|EGA03340.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220034|gb|EGA04504.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224804|gb|EGA09069.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232487|gb|EGA16589.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235262|gb|EGA19347.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241050|gb|EGA25087.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241400|gb|EGA25432.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248631|gb|EGA32561.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252070|gb|EGA35930.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258626|gb|EGA42289.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262343|gb|EGA45901.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268179|gb|EGA51655.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270593|gb|EGA54038.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332990688|gb|AEF09671.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 466 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 G + + +++ P A + + T ++S Sbjct: 63 LNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPAQTTTAQPQRVAPAARSGWDNVPAP 122 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 178 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|198245954|ref|YP_002217788.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226735839|sp|B5FN10|DNAA_SALDC RecName: Full=Chromosomal replication initiator protein DnaA gi|197940470|gb|ACH77803.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] Length = 466 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 G + + +++ P A + + T ++S Sbjct: 63 LNAFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDNVPAP 122 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 178 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|238754004|ref|ZP_04615363.1| Chromosomal replication initiator protein dnaA [Yersinia ruckeri ATCC 29473] gi|238707756|gb|EEQ00115.1| Chromosomal replication initiator protein dnaA [Yersinia ruckeri ATCC 29473] Length = 463 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 254/471 (53%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + V + ++ + P+ + P + Sbjct: 63 LNDFCGTNVPLLRFEVGSKPVVQRMNQPVTAASVSAPVVPVIRSAPMRPSWDSSPVQPEL 122 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|205359063|ref|ZP_02666990.2| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205338899|gb|EDZ25663.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|323132199|gb|ADX19629.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 470 Score = 521 bits (1342), Expect = e-145, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 G + + +++ P A + + T ++S Sbjct: 67 LNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPAQTTTAQPQRVAPAARSGWDNVPAP 126 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 127 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 181 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 182 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 241 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 242 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 301 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 356 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMA 415 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 469 >gi|238793143|ref|ZP_04636771.1| Chromosomal replication initiator protein dnaA [Yersinia intermedia ATCC 29909] gi|238727516|gb|EEQ19042.1| Chromosomal replication initiator protein dnaA [Yersinia intermedia ATCC 29909] Length = 462 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 249/470 (52%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + +S S + + Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAIRAHSHPVTASVSAPVAPVTRSAPVRPSWDSSPAQPEHS 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|45443728|ref|NP_995267.1| chromosomal replication initiation protein [Yersinia pestis biovar Microtus str. 91001] gi|51598227|ref|YP_072418.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis IP 32953] gi|108810133|ref|YP_654049.1| chromosomal replication initiation protein [Yersinia pestis Antiqua] gi|108814115|ref|YP_649882.1| chromosomal replication initiation protein [Yersinia pestis Nepal516] gi|145597325|ref|YP_001161400.1| chromosomal replication initiation protein [Yersinia pestis Pestoides F] gi|150260968|ref|ZP_01917696.1| chromosomal replication initiator protein [Yersinia pestis CA88-4125] gi|153950668|ref|YP_001403095.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis IP 31758] gi|162419763|ref|YP_001608448.1| chromosomal replication initiation protein [Yersinia pestis Angola] gi|165926099|ref|ZP_02221931.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. F1991016] gi|166009506|ref|ZP_02230404.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. E1979001] gi|166213287|ref|ZP_02239322.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401560|ref|ZP_02307054.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422851|ref|ZP_02314604.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425478|ref|ZP_02317231.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218931074|ref|YP_002348949.1| chromosomal replication initiation protein [Yersinia pestis CO92] gi|229839804|ref|ZP_04459963.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841889|ref|ZP_04462045.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229896766|ref|ZP_04511929.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Pestoides A] gi|229904654|ref|ZP_04519765.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Nepal516] gi|270488365|ref|ZP_06205439.1| chromosomal replication initiator protein DnaA [Yersinia pestis KIM D27] gi|294505625|ref|YP_003569687.1| chromosomal replication initiation protein [Yersinia pestis Z176003] gi|21362472|sp|Q8Z9U7|DNAA_YERPE RecName: Full=Chromosomal replication initiator protein DnaA gi|61212542|sp|Q663T2|DNAA_YERPS RecName: Full=Chromosomal replication initiator protein DnaA gi|123073045|sp|Q1CCJ8|DNAA_YERPN RecName: Full=Chromosomal replication initiator protein DnaA gi|123371953|sp|Q1C0B8|DNAA_YERPA RecName: Full=Chromosomal replication initiator protein DnaA gi|166215370|sp|A4TGL5|DNAA_YERPP RecName: Full=Chromosomal replication initiator protein DnaA gi|167016907|sp|A7FPB7|DNAA_YERP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735866|sp|A9R5R5|DNAA_YERPG RecName: Full=Chromosomal replication initiator protein DnaA gi|45438598|gb|AAS64144.1| chromosomal replication initiator protein [Yersinia pestis biovar Microtus str. 91001] gi|51591509|emb|CAH23181.1| chromosomal replication initiator protein [Yersinia pseudotuberculosis IP 32953] gi|108777763|gb|ABG20282.1| chromosomal replication initiator protein DnaA [Yersinia pestis Nepal516] gi|108782046|gb|ABG16104.1| chromosomal replication initiator protein DnaA [Yersinia pestis Antiqua] gi|115349685|emb|CAL22666.1| chromosomal replication initiator protein [Yersinia pestis CO92] gi|145209021|gb|ABP38428.1| chromosomal replication initiator protein [Yersinia pestis Pestoides F] gi|149290376|gb|EDM40453.1| chromosomal replication initiator protein [Yersinia pestis CA88-4125] gi|152962163|gb|ABS49624.1| chromosomal replication initiator protein DnaA [Yersinia pseudotuberculosis IP 31758] gi|162352578|gb|ABX86526.1| chromosomal replication initiator protein DnaA [Yersinia pestis Angola] gi|165921959|gb|EDR39136.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. F1991016] gi|165991428|gb|EDR43729.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. E1979001] gi|166205585|gb|EDR50065.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. B42003004] gi|166958243|gb|EDR55264.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048942|gb|EDR60350.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055492|gb|EDR65285.1| chromosomal replication initiator protein DnaA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229678772|gb|EEO74877.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Nepal516] gi|229691228|gb|EEO83281.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. India 195] gi|229696170|gb|EEO86217.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700204|gb|EEO88240.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis Pestoides A] gi|270336869|gb|EFA47646.1| chromosomal replication initiator protein DnaA [Yersinia pestis KIM D27] gi|294356084|gb|ADE66425.1| chromosomal replication initiation protein [Yersinia pestis Z176003] gi|320017427|gb|ADW00999.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 462 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 250/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + A +S S + + Sbjct: 63 LNDFCGTEVPLLRFEVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDNSPAQPELS 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|16762487|ref|NP_458104.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143975|ref|NP_807317.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|197265269|ref|ZP_03165343.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|207859064|ref|YP_002245715.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213021809|ref|ZP_03336256.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052696|ref|ZP_03345574.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213424952|ref|ZP_03357702.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213581270|ref|ZP_03363096.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213648784|ref|ZP_03378837.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289826405|ref|ZP_06545517.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|21362471|sp|Q8Z2N6|DNAA_SALTI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735840|sp|B5QUQ0|DNAA_SALEP RecName: Full=Chromosomal replication initiator protein DnaA gi|25299855|pir||AI0957 chromosomal replication initiator protein [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504792|emb|CAD03157.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhi] gi|29139611|gb|AAO71177.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|197243524|gb|EDY26144.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|206710867|emb|CAR35231.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 466 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 G + + +++ P A + + T ++S Sbjct: 63 LNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDNVPAP 122 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 178 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|153948|gb|AAA02815.1| dnaA protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 466 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 G + + +++ P A + + T ++S Sbjct: 63 LNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPAQTTTTQPQRVAPAARSGWDNVPAP 122 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 178 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|22127981|ref|NP_671404.1| chromosomal replication initiation protein [Yersinia pestis KIM 10] gi|21961126|gb|AAM87655.1|AE014012_12 DNA biosynthesis protein [Yersinia pestis KIM 10] Length = 466 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 250/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + A +S S + + Sbjct: 67 LNDFCGTEVPLLRFEVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDNSPAQPELS 126 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 127 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 181 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 182 HAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 241 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 242 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 301 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 302 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 356 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 357 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 415 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|238759584|ref|ZP_04620746.1| Chromosomal replication initiator protein dnaA [Yersinia aldovae ATCC 35236] gi|238702243|gb|EEP94798.1| Chromosomal replication initiator protein dnaA [Yersinia aldovae ATCC 35236] Length = 462 Score = 521 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 249/470 (52%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + +S S + + Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAVRAHNHPVTASVSAPVAPVTRSAPVRPSWDSSPAQPEHS 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N I R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIIARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|261819371|ref|YP_003257477.1| chromosomal replication initiation protein [Pectobacterium wasabiae WPP163] gi|261603384|gb|ACX85870.1| chromosomal replication initiator protein DnaA [Pectobacterium wasabiae WPP163] Length = 465 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 153/474 (32%), Positives = 259/474 (54%), Gaps = 22/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELGDNTLALYAPNRFVLDWVRDKYLNNINIL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + G + LV++V+ P+ + + S+ + P+ + Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQAVSQPA-QSHHNPVSVARQQPVRAAPVRPSWDNSPVQ 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 122 AEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 177 THLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 236 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 237 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 297 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRS 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 352 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|62182326|ref|YP_218743.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|71151802|sp|Q57I00|DNAA_SALCH RecName: Full=Chromosomal replication initiator protein DnaA gi|62129959|gb|AAX67662.1| DNA replication initiator protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322716817|gb|EFZ08388.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 466 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 G + + +++ P A + + T ++S Sbjct: 63 LNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDNVPAP 122 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 178 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LAKELTNYSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|224585637|ref|YP_002639436.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224470165|gb|ACN47995.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 470 Score = 520 bits (1340), Expect = e-145, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 G + + +++ P A + + T ++S Sbjct: 67 LNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDNVPAP 126 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 127 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 181 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 182 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 241 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 242 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 301 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 356 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMA 415 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 LAKELTNYSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 469 >gi|238750289|ref|ZP_04611791.1| Chromosomal replication initiator protein dnaA [Yersinia rohdei ATCC 43380] gi|238711522|gb|EEQ03738.1| Chromosomal replication initiator protein dnaA [Yersinia rohdei ATCC 43380] Length = 462 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 250/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + +S S I + + Sbjct: 63 LNDFCGSEVPLLRFEVGSKPAVRAHNHPVTASVSAPVAPVIRSAPVRPSWDSSPAQPELS 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|205354575|ref|YP_002228376.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226735841|sp|B5RFY7|DNAA_SALG2 RecName: Full=Chromosomal replication initiator protein DnaA gi|205274356|emb|CAR39381.1| chromosomal replication initiator protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326629711|gb|EGE36054.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 466 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 255/474 (53%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELRDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 G + + +++ P A + + T ++S Sbjct: 63 LNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDNVPAP 122 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 AEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 178 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|118475779|ref|YP_892930.1| chromosomal replication initiation protein [Bacillus thuringiensis str. Al Hakam] gi|118415004|gb|ABK83423.1| chromosomal replication initiator protein [Bacillus thuringiensis str. Al Hakam] Length = 465 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 155/470 (32%), Positives = 262/470 (55%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 22 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 81 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + ++ + + L P N + + + + Sbjct: 82 SETLYDLTGAKLAIRFII---------PQSQAEEEIDLPPAKPNAA-------QDDSNHL 125 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 126 PQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 180 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 181 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 240 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 241 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 300 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 301 IAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 355 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 356 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 415 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 416 LTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 465 >gi|146309668|ref|YP_001174742.1| chromosomal replication initiator protein DnaA [Enterobacter sp. 638] gi|145316544|gb|ABP58691.1| chromosomal replication initiator protein DnaA [Enterobacter sp. 638] Length = 483 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 151/472 (31%), Positives = 252/472 (53%), Gaps = 19/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 23 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 81 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINT--NISKSPIILGKQTIS 151 + E+ + V E + P ++S Sbjct: 82 LNDFCGADAPQLRFEVGTKPVTQTVRETVNVAAPAQIHVPTPRIIQPARSGWDNVPAPAE 141 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTH Sbjct: 142 PTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTH 196 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 197 LLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF 256 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 257 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE 316 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 317 TRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAIT 371 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+ Sbjct: 372 IDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALA 430 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 431 KELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 482 >gi|50123359|ref|YP_052526.1| chromosomal replication initiation protein [Pectobacterium atrosepticum SCRI1043] gi|61212568|sp|Q6CYR4|DNAA_ERWCT RecName: Full=Chromosomal replication initiator protein DnaA gi|49613885|emb|CAG77337.1| chromosomal replication initiator protein [Pectobacterium atrosepticum SCRI1043] Length = 465 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 259/474 (54%), Gaps = 22/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINVL 62 Query: 97 FQEEHSRI-------QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + G + LV++++ P+ + + S+ + P+ + Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQTISQPA-QSHHNPVSVARQQPVRMAPVRPSWDNSPVQ 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 122 AEHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 177 THLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 236 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 237 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 297 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRS 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 352 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMA 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|308047723|ref|YP_003911289.1| chromosomal replication initiator protein DnaA [Ferrimonas balearica DSM 9799] gi|307629913|gb|ADN74215.1| chromosomal replication initiator protein DnaA [Ferrimonas balearica DSM 9799] Length = 468 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 156/470 (33%), Positives = 257/470 (54%), Gaps = 26/470 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ RL++++ ++ W + L+ ++ + + L P F+ W++++YL +IT Sbjct: 18 VWQQCVERLRDELPAQQFSMWIRPLQA-ELMGDTLVLYAPNRFVLDWVRDKYLNSITAFL 76 Query: 98 QEEHSRI---QGVEILVRSVALPSVEKTASSPSIT-KLSPINTNISKSPIILGKQTISPV 153 E +I + A P V+ P+ SP+ T S + Sbjct: 77 AETLGDQAPALQFDIGSKPEARPKVDIGTPRPAAAVPASPVRTEPPAS--------SNQS 128 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++A AA +A+ Y NPLF++ GLGKTHLL Sbjct: 129 VRSNINPNYQFDNFVEGKSNQLARAAASQVADNPGGAY-----NPLFLYGGTGLGKTHLL 183 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N +KR+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 184 HAVGNGIMKRKPNAKVVYMHSERFVQDMVKALQNNAIAEFKRYYRSVDALLIDDIQFFAN 243 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 244 KDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETR 303 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + E+ +++ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 304 VAIL-----MRKAEESNIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 358 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQVAM L+K Sbjct: 359 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQVAMALAKE 417 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 418 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYANLIRTLS 467 >gi|317494667|ref|ZP_07953079.1| chromosomal replication initiator protein DnaA [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917269|gb|EFV38616.1| chromosomal replication initiator protein DnaA [Enterobacteriaceae bacterium 9_2_54FAA] Length = 466 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 256/474 (54%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSR---IQGVEILVR--SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + E+ + + A+P +S S + N++ Sbjct: 63 LNDFCGSDAPVLRFEVGTKPATAAIPVQSPVMASVSAPVIQTAARNVAPMRPSWDNSPAQ 122 Query: 152 P--VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 PELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 178 THLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|307133247|ref|YP_003885263.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Dickeya dadantii 3937] gi|306530776|gb|ADN00707.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Dickeya dadantii 3937] Length = 462 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 251/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYINNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + + V S + + + Sbjct: 63 LNDFCGMDAPLLRFEVGSKPMTPAVVSTGHHSAAAPAPQARAASPVRPSWETPAAQAEHT 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 123 YRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|212712612|ref|ZP_03320740.1| hypothetical protein PROVALCAL_03707 [Providencia alcalifaciens DSM 30120] gi|212684828|gb|EEB44356.1| hypothetical protein PROVALCAL_03707 [Providencia alcalifaciens DSM 30120] Length = 491 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 257/471 (54%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 32 SLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYINNINEL 90 Query: 97 FQEEHSRIQG---VEILVRSV-ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + E+ + + A P + + + + + + S K Sbjct: 91 LNDFCGSDAPALHFEVGNKPMMAAPVSPQVRTHNEMPAFAAPSAPVKPSWDNSAKVQPDV 150 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +AE Y NPLF++ GLGKTHL Sbjct: 151 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVAENPGGAY-----NPLFLYGGTGLGKTHL 205 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N+ ++ + N RVVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 206 LHAVGNSIMQHKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 265 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 266 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 325 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 326 RVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 380 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 381 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 439 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 440 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 490 >gi|188584643|ref|YP_001916188.1| chromosomal replication initiator protein DnaA [Natranaerobius thermophilus JW/NM-WN-LF] gi|226735829|sp|B2A2Y6|DNAA_NATTJ RecName: Full=Chromosomal replication initiator protein DnaA gi|179349330|gb|ACB83600.1| chromosomal replication initiator protein DnaA [Natranaerobius thermophilus JW/NM-WN-LF] Length = 453 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 158/472 (33%), Positives = 266/472 (56%), Gaps = 24/472 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N E +++ LK Q+ + +WFQ + + +++SVP F K W+ +RY Sbjct: 1 MSENMEELWSKTLEELKQQLSKPSFETWFQSTEPVEMSSTDLYISVPNEFTKDWLNSRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +I ++ + ++ L+ I N N K K + Sbjct: 61 NSIENSLKKISGKQLKIKFLL------------PGEKIKMEEQNNENEEKPESTSKKSSQ 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ ++ F TF+ G++NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 109 GSEHTTWLNPKYTFDTFVIGNANRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + QPN RVVY+++E F F +AIRDN +N ++ RN+D+LL+DD+QF Sbjct: 164 HLMHAIGHYVLSHQPNYRVVYISSEKFTNEFINAIRDNKTVNFRNKYRNVDILLVDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 224 LAGKEQTQEEFFHTFNTLHENDKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQAPDL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + + + L+I +V++++A + T+ REL+G +++ S A + Sbjct: 284 ETRIAILRKKAYLEK-----LDIPNDVIVYIANQIDTNIRELEGGLIRVIAYSSMANKKI 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A+E L ++ + KKM +E IQ+ VA+++ + +DL + +R R+V PRQ+AMYL Sbjct: 339 TKETAEEALKDILPNKQPKKMTVEHIQKTVAQYFGLKVDDLKAKKRTRSVAFPRQIAMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ +T S P+IG FG RDHTTV+HA K+ L+ + L + ++ +K L+ Sbjct: 399 ARELTDSSLPKIGDEFGGRDHTTVMHAHDKIASDLKKESHLNETIDEIKNLL 450 >gi|268593488|ref|ZP_06127709.1| DNA biosynthesis protein [Providencia rettgeri DSM 1131] gi|291310910|gb|EFE51363.1| DNA biosynthesis protein [Providencia rettgeri DSM 1131] Length = 463 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 259/471 (54%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYINNINEL 62 Query: 97 FQEEHSRIQG---VEILVRSVAL-PSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + E+ + + + P+ + ++ + + + I S K Sbjct: 63 LNDFCGTDAPALHFEVGNKPITVAPAATQARTAQQVPAFAVPSAPIKPSWDNSAKVQPEV 122 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +AE Y NPLF++ GLGKTHL Sbjct: 123 AYRSNVNPKHTFDNFVEGKSNQLARAAARQVAENPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N+ ++ + N RVVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNSIMQHKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|157368281|ref|YP_001476270.1| chromosomal replication initiation protein [Serratia proteamaculans 568] gi|167016905|sp|A8G7Q2|DNAA_SERP5 RecName: Full=Chromosomal replication initiator protein DnaA gi|157320045|gb|ABV39142.1| chromosomal replication initiator protein DnaA [Serratia proteamaculans 568] Length = 463 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 252/471 (53%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI-ILGKQTISP 152 + + E+ + ++ + +S S + P Sbjct: 63 LNDFCGTDAPLLRFEVGSKPLSQIISQTVTASVSAPSAPIVRVAAPSRPSWDNAAPQPEL 122 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|161505631|ref|YP_001572743.1| chromosomal replication initiation protein [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160866978|gb|ABX23601.1| hypothetical protein SARI_03807 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 469 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 153/475 (32%), Positives = 257/475 (54%), Gaps = 24/475 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT------- 149 L V V +T +P ++P T +++ + + Sbjct: 67 LNTFCGADAPQ--LRFEVGTKPVTQTLKTPVHNIVAPAQTTMAQQRVAPAARPGWDNVPA 124 Query: 150 -ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 125 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 179 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 180 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 239 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 240 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 299 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 300 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 354 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 355 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAM 413 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 414 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 468 >gi|270264119|ref|ZP_06192386.1| chromosomal replication initiator protein DnaA [Serratia odorifera 4Rx13] gi|270041768|gb|EFA14865.1| chromosomal replication initiator protein DnaA [Serratia odorifera 4Rx13] Length = 463 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 251/471 (53%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI-ILGKQTISP 152 + + E+ + + + +S S + P Sbjct: 63 LNDFCGTDAPLLRFEVGSKPLTQIISQTVTASVSAPSAPVVRAVAPSRPSWDNAAPQPEL 122 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|323487687|ref|ZP_08092945.1| chromosomal replication initiation protein [Planococcus donghaensis MPA1U2] gi|323398421|gb|EGA91209.1| chromosomal replication initiation protein [Planococcus donghaensis MPA1U2] Length = 447 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 153/474 (32%), Positives = 264/474 (55%), Gaps = 29/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + + +++ V ++++ ++ + +W + K S + V +S P +F + W++N Y+ Sbjct: 1 ME-HLDELWSSVLAQVETKISKPSFETWLKSTKLLSYQDDTVTISAPNSFARDWLENHYV 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT + + +++++ V + ++ P G+ Sbjct: 60 HLITGILSDTTGD----DMMIKFVVPKDQDMDDFQLPAPRVKP------------GQDQQ 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 HEFLPGMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ PN +VVYL++E F F ++IRDN +D R++D+LLIDD+QF Sbjct: 159 HLMHAIGHYVLEHNPNAKVVYLSSEKFTNEFINSIRDNKTGEFRDKYRSVDILLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I +V+ ++A ++ ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKADGLDIPNDVMTYIANSIDSNIRELEGALIRVVAYSSLINRDM 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 +AE+A E L ++ + K + I DIQ V + +N+ D + RR + + PRQVAMYL Sbjct: 334 SAELASEALKDIMPNSKPKVITILDIQNAVGEQFNVKLEDFKTKRRTKDIAYPRQVAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ MT S P+IG FG RDHTTV+HA K+ KML + L+++V+ +K + + Sbjct: 394 SREMTDFSLPKIGEEFGGRDHTTVIHAHDKISKMLTDNQQLQQDVKDIKSALGK 447 >gi|291615643|ref|YP_003518385.1| DnaA [Pantoea ananatis LMG 20103] gi|291150673|gb|ADD75257.1| DnaA [Pantoea ananatis LMG 20103] Length = 472 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 152/476 (31%), Positives = 259/476 (54%), Gaps = 23/476 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L Sbjct: 8 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNSINAL 66 Query: 97 FQEEHS---RIQGVEILVRSV------ALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 E + E+ R V + P++ ++ + + P I + Sbjct: 67 LNEFCGANVPLLRFEVGTRPVQQAAAVSQPAMASVSAPAAPVQNRPAPAQIVRPSWDNVP 126 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 127 APADVTYRSNVNNRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 181 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 182 GKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 241 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 301 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 356 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 357 RAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMA 415 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M ++K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 MAMAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 471 >gi|308188765|ref|YP_003932896.1| Chromosomal replication initiator protein dnaA [Pantoea vagans C9-1] gi|308059275|gb|ADO11447.1| Chromosomal replication initiator protein dnaA [Pantoea vagans C9-1] Length = 471 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 154/479 (32%), Positives = 257/479 (53%), Gaps = 26/479 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L Sbjct: 4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNSINAL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASS---------PSITKLSPINTNISKSPII 144 E E+ R V P+ + P + + P T I + Sbjct: 63 LNEFCGPNVPALRFEVGTRPVQQPAAAVSQPVMASVSAPVMPVQSHIRPAPTQILRPSWD 122 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 123 NVPAPADVTYRSNVNNRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 177 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 178 TGLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 237 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 238 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 297 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 298 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 352 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 353 FTGRAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 411 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM ++K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 QMAMAMAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|183597172|ref|ZP_02958665.1| hypothetical protein PROSTU_00415 [Providencia stuartii ATCC 25827] gi|188023486|gb|EDU61526.1| hypothetical protein PROSTU_00415 [Providencia stuartii ATCC 25827] Length = 463 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 258/471 (54%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYINNINEL 62 Query: 97 FQEEHS---RIQGVEILVRSVAL-PSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + E+ + + + P+ + + ++ + + S K Sbjct: 63 LNDFCGTDAPALRFEVGSKPITVSPTNTQARHTHEAPAIAVPSAPVKPSWDNSTKAQPDV 122 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +AE Y NPLF++ GLGKTHL Sbjct: 123 AYRSNVNPKHTFDNFVEGKSNQLARAAARQVAENPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N+ ++ + N RVVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNSIMQHKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|260595830|ref|YP_003208401.1| Chromosomal replication initiator protein dnaA [Cronobacter turicensis z3032] gi|260215007|emb|CBA26668.1| Chromosomal replication initiator protein dnaA [Cronobacter turicensis z3032] Length = 486 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 252/470 (53%), Gaps = 18/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 29 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 87 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + + + AS + + P Sbjct: 88 LNDFCGSDAPLLRFEVGTKPLTQ-TTTAPASQTVRPAQAAPAAAPVRPAWDNVPAPAEPS 146 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 147 YRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLL 201 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 202 HAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 261 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 262 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 321 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 322 VAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 376 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 377 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 435 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 436 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 485 >gi|311277333|ref|YP_003939564.1| chromosomal replication initiator protein DnaA [Enterobacter cloacae SCF1] gi|308746528|gb|ADO46280.1| chromosomal replication initiator protein DnaA [Enterobacter cloacae SCF1] Length = 465 Score = 518 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 253/473 (53%), Gaps = 20/473 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTI 150 + + + V + + + + + + +P Sbjct: 63 LNDFCGTDVPQLRFEVGTKPVTQAVREPAHVAAPAQAAQMQMPRAAPAARPGWDNVPAPA 122 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKT Sbjct: 123 EPSYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKT 177 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQF 237 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPEL 297 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F + Sbjct: 298 ETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAI 352 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L Sbjct: 353 TIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAL 411 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 AKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|126172258|ref|YP_001048407.1| chromosomal replication initiation protein [Shewanella baltica OS155] gi|152998556|ref|YP_001364237.1| chromosomal replication initiation protein [Shewanella baltica OS185] gi|160873127|ref|YP_001552443.1| chromosomal replication initiation protein [Shewanella baltica OS195] gi|217971217|ref|YP_002355968.1| chromosomal replication initiation protein [Shewanella baltica OS223] gi|304412705|ref|ZP_07394308.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS183] gi|307305830|ref|ZP_07585576.1| chromosomal replication initiator protein DnaA [Shewanella baltica BA175] gi|166215328|sp|A3CYH5|DNAA_SHEB5 RecName: Full=Chromosomal replication initiator protein DnaA gi|166215329|sp|A6WH85|DNAA_SHEB8 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083277|sp|A9KU72|DNAA_SHEB9 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777912|sp|B8E3P4|DNAA_SHEB2 RecName: Full=Chromosomal replication initiator protein DnaA gi|125995463|gb|ABN59538.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS155] gi|151363174|gb|ABS06174.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS185] gi|160858649|gb|ABX47183.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS195] gi|217496352|gb|ACK44545.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS223] gi|304348915|gb|EFM13330.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS183] gi|306911323|gb|EFN41749.1| chromosomal replication initiator protein DnaA [Shewanella baltica BA175] gi|315265352|gb|ADT92205.1| chromosomal replication initiator protein DnaA [Shewanella baltica OS678] Length = 462 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 252/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E+ +I R A +P+ + + + + + + Sbjct: 63 FTEQMGSDAPKLRFDIGSRPSAKKPSVPAPIAPTRVANTQTKATVGTTFNVQAEPMANAN 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 123 HRSNINPSYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 178 HAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 238 KDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 412 LTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 461 >gi|238917984|ref|YP_002931498.1| chromosomal replication initiator protein DnaA, [Edwardsiella ictaluri 93-146] gi|259645249|sp|C5BHC5|DNAA_EDWI9 RecName: Full=Chromosomal replication initiator protein DnaA gi|238867552|gb|ACR67263.1| chromosomal replication initiator protein DnaA, putative [Edwardsiella ictaluri 93-146] Length = 463 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 150/471 (31%), Positives = 257/471 (54%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYINNINGL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + + +V ASS + + + + P + Sbjct: 63 LNDFCGSDAPVLRFEVGSKPIVPVAVSSAASSGASVPPAAVRASSLARPSWERVTAQPEL 122 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|229542315|ref|ZP_04431375.1| chromosomal replication initiator protein DnaA [Bacillus coagulans 36D1] gi|229326735|gb|EEN92410.1| chromosomal replication initiator protein DnaA [Bacillus coagulans 36D1] Length = 449 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 155/473 (32%), Positives = 265/473 (56%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ S ++ ++ + +W + K +S+ ++ +SVP F + W++ Y+ Sbjct: 1 ME-NIADLWEKALSVIEKKISKPSFDTWLKSTKAYSLKNDTFVISVPNEFARDWLEGHYI 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT + + ++ ++ ++ S SP + K Sbjct: 60 PLITTVLYDITGEELEIKFVI-------PQQQDSDEPELFPSPKKSA--------EKLND 104 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 105 TRDYQSMLIPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +VVYL++E F F ++IRDN ++ RN+D+LLIDD+QF Sbjct: 160 HLMHAIGHYVLEHNPKAKVVYLSSEKFTNEFINSIRDNKGGEFRNKYRNVDILLIDDIQF 219 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 220 LAGKESTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEERLRSRFEWGLITDITPPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + T+ REL+GA ++V S + Sbjct: 280 ETRIAILRK-----KAKADGLDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINKDI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + IEDIQ++V + Y++ D + +R ++V PRQ+AMYL Sbjct: 335 NADLAAEALKDIIPSAKPKTITIEDIQKVVGEEYHVKMEDFKAKKRTKSVAFPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ +++TD +K++E L+ L+ Sbjct: 395 SRELTDFSLPKIGEEFGGRDHTTVIHAHEKIANLIQTDAQFQKKIEELQNLLK 447 >gi|253686410|ref|YP_003015600.1| chromosomal replication initiator protein DnaA [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259645256|sp|C6DGH7|DNAA_PECCP RecName: Full=Chromosomal replication initiator protein DnaA gi|251752988|gb|ACT11064.1| chromosomal replication initiator protein DnaA [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 465 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 154/473 (32%), Positives = 254/473 (53%), Gaps = 20/473 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL +++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLHDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINVL 62 Query: 97 FQEEHSRIQGV-EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP--- 152 + + V S L + P ++S +S + SP Sbjct: 63 LNDFCGMDAPLLRFEVGSKPLVQAISQPAQPHHKQVSAAPQQQVRSAPVRPSWDNSPAQA 122 Query: 153 --VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKT Sbjct: 123 EHTYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKT 177 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQF 237 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPEL 297 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F + Sbjct: 298 ETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRSI 352 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L Sbjct: 353 TIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAL 411 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 AKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|320539854|ref|ZP_08039513.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Serratia symbiotica str. Tucson] gi|320030040|gb|EFW12060.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Serratia symbiotica str. Tucson] Length = 460 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 149/468 (31%), Positives = 251/468 (53%), Gaps = 15/468 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-QLSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQGV-EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + V S + + S + T S+ + Sbjct: 63 LNDFCGTDAPLLRFEVGSKPISQIISQTLSVNAPAAPVARTAPSRPSWDNAAPQPELSYR 122 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A Sbjct: 123 SNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHA 177 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 178 VGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 237 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R + Sbjct: 238 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 297 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 IL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFV 352 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 353 REALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELT 411 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R++S Sbjct: 412 NHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHGIKEDFSNLIRILS 459 >gi|114045514|ref|YP_736064.1| chromosomal replication initiation protein [Shewanella sp. MR-7] gi|123131884|sp|Q0I0U8|DNAA_SHESR RecName: Full=Chromosomal replication initiator protein DnaA gi|113886956|gb|ABI41007.1| chromosomal replication initiator protein DnaA [Shewanella sp. MR-7] Length = 460 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 150/469 (31%), Positives = 254/469 (54%), Gaps = 17/469 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK--SPIILGKQTISPVF 154 F E+ ++ + PS +K +P P + + + ++ Sbjct: 63 FTEQMGNDAP-KLRFDIGSRPSAKKPEPAPVAAVRVPNPQTKASVGTSFNTTEPVVNANH 121 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 122 RSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHLLH 176 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF K Sbjct: 177 AVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANK 236 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 237 DRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRV 296 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 297 AIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDF 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK + Sbjct: 352 VREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKEL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 411 TNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 459 >gi|24371608|ref|NP_715650.1| chromosomal replication initiation protein [Shewanella oneidensis MR-1] gi|38257603|sp|Q8EKT2|DNAA_SHEON RecName: Full=Chromosomal replication initiator protein DnaA gi|24345358|gb|AAN53095.1|AE015452_8 chromosomal replication initiator protein DnaA [Shewanella oneidensis MR-1] Length = 460 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 150/469 (31%), Positives = 253/469 (53%), Gaps = 17/469 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK--SPIILGKQTISPVF 154 F E+ ++ + PS +K +P P + + + + Sbjct: 63 FTEQMGNDAP-KLRFDIGSRPSAKKPEPAPVAAVRVPSPQTKASVGTAFNTTEPVANTNH 121 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 122 RSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHLLH 176 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF K Sbjct: 177 AVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANK 236 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 237 DRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRV 296 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 297 AIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDF 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK + Sbjct: 352 VREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKEL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 411 TNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 459 >gi|212637850|ref|YP_002314370.1| chromosomal replication initiation protein [Anoxybacillus flavithermus WK1] gi|226735773|sp|B7GFK8|DNAA_ANOFW RecName: Full=Chromosomal replication initiator protein DnaA gi|212559330|gb|ACJ32385.1| DNA replication initiation ATPase [Anoxybacillus flavithermus WK1] Length = 447 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 266/473 (56%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ + ++ ++ + +W + HS+ +I+ ++VP F K W+++RY Sbjct: 1 ME-NISDLWNKALAEIEKKISKPSFETWLKSTTAHSLKGDILIITVPNEFTKDWLESRYT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + + ++ + P+ + T P + ++ Sbjct: 60 RLIEQTLYDITGEELKIKCTI-----PNHQTTEEFDLKPTSKPRKHDDEQTEFP------ 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 109 ----QSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P+ +VVYL++E F F +AIRDN + ++ RN+D+LLIDD+QF Sbjct: 160 HLMHAIGHYVLEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNKYRNVDVLLIDDIQF 219 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 220 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + +I EV++++A + ++ REL+GA ++V S + Sbjct: 280 ETRIAILRK-----KAKAEGFDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKEI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + I+DIQR+V +H+N+ D + +R ++V PRQ+AMYL Sbjct: 335 NADLAAEALKDIIPSSKPKVITIQDIQRVVGEHFNVKLEDFKAKKRTKSVAFPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ +++TD+ L+K+++ + + Sbjct: 395 SRELTDCSLPKIGEEFGGRDHTTVIHAHEKISALIQTDVQLQKQLKEIMEKLK 447 >gi|37524033|ref|NP_927377.1| chromosomal replication initiation protein [Photorhabdus luminescens subsp. laumondii TTO1] gi|61212694|sp|Q7NAD3|DNAA_PHOLL RecName: Full=Chromosomal replication initiator protein DnaA gi|36783456|emb|CAE12296.1| Chromosomal replication initiator protein DnaA [Photorhabdus luminescens subsp. laumondii TTO1] Length = 462 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 154/472 (32%), Positives = 258/472 (54%), Gaps = 21/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSGNTLALYAPNRFVLDWVREKYINNINGL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSP----SITKLSPINTNISKSPIILGKQTISP 152 + V +L V V + S P + T ++P N S P Sbjct: 63 LNDFCG--AEVPLLRFEVGNKPVSQNDSPPQRVVTHTPVAPAPQNTSVRPSWDNTAVQPE 120 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTH Sbjct: 121 LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTH 175 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N+ + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 176 LLHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF 235 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 236 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE 295 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 296 TRVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAIT 350 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+ Sbjct: 351 IDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALA 409 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 KELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|188535562|ref|YP_001909359.1| Chromosomal replication initiator protein [Erwinia tasmaniensis Et1/99] gi|226735811|sp|B2VCE3|DNAA_ERWT9 RecName: Full=Chromosomal replication initiator protein DnaA gi|188030604|emb|CAO98499.1| Chromosomal replication initiator protein [Erwinia tasmaniensis Et1/99] Length = 463 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 257/471 (54%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNNINAL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E + E+ + VA + S + ++ P ++ + Sbjct: 63 LNEFCGANVPLLRFEVGSKPVAQAISQPVMVSAHASAPGVVSRPAPTRPSWDNVPALAEL 122 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++++ F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNTKHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|113968347|ref|YP_732140.1| chromosomal replication initiation protein [Shewanella sp. MR-4] gi|123130898|sp|Q0HPD4|DNAA_SHESM RecName: Full=Chromosomal replication initiator protein DnaA gi|113883031|gb|ABI37083.1| chromosomal replication initiator protein DnaA [Shewanella sp. MR-4] Length = 460 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 150/469 (31%), Positives = 253/469 (53%), Gaps = 17/469 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK--SPIILGKQTISPVF 154 F E+ ++ + PS +K +P P + + + + Sbjct: 63 FTEQMGNDAP-KLRFDIGSRPSAKKPEPAPVAAVRVPNPQTKASVGTSFNTTEPVANTNH 121 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 122 RSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHLLH 176 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF K Sbjct: 177 AVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANK 236 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 237 DRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRV 296 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 297 AIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDF 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK + Sbjct: 352 VREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKEL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 411 TNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 459 >gi|117918468|ref|YP_867660.1| chromosomal replication initiation protein [Shewanella sp. ANA-3] gi|166215332|sp|A0KR35|DNAA_SHESA RecName: Full=Chromosomal replication initiator protein DnaA gi|117610800|gb|ABK46254.1| chromosomal replication initiator protein DnaA [Shewanella sp. ANA-3] Length = 460 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 149/469 (31%), Positives = 253/469 (53%), Gaps = 17/469 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK--SPIILGKQTISPVF 154 F E+ ++ + PS +K +P P + + + + Sbjct: 63 FTEQMGNDAP-KLRFDIGSRPSAKKPEPAPVAAVRVPNPQTKASVGTSFNTTEPVANANH 121 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 122 RSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHLLH 176 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N IK P+ +VVY+ +E F+ A+++N K R++D L IDD+QF K Sbjct: 177 AVGNGIIKNNPDAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANK 236 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 237 DRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRV 296 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 297 AIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDF 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK + Sbjct: 352 VREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKEL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 411 TNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 459 >gi|304398068|ref|ZP_07379943.1| chromosomal replication initiator protein DnaA [Pantoea sp. aB] gi|304354354|gb|EFM18726.1| chromosomal replication initiator protein DnaA [Pantoea sp. aB] Length = 471 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 154/479 (32%), Positives = 264/479 (55%), Gaps = 26/479 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL +I L Sbjct: 4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNSINAL 62 Query: 97 FQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLS----PINTNISKSPIILGKQTIS 151 E + + V + + S P + +S P+ ++I +P + + + Sbjct: 63 LNEFCGPNVPALRFEVGTRPVQQQAAAVSQPVMASVSAPVMPVQSHIRPAPAQIMRPSWD 122 Query: 152 PV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 V + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 123 NVPAPADVTYRSNVNNRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGG 177 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ N I R+PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 178 TGLGKTHLLHAVGNGIIARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 237 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 238 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 297 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ + Sbjct: 298 IEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANAN 352 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 353 FTGRAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 411 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM ++K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 QMAMAMAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|301051742|ref|YP_003789953.1| chromosomal replication initiation protein [Bacillus anthracis CI] gi|300373911|gb|ADK02815.1| chromosomal replication initiation protein [Bacillus cereus biovar anthracis str. CI] Length = 446 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 265/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L P TN + + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEEIDLPPAKTNAA-------QDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 446 >gi|300719141|ref|YP_003743944.1| Chromosomal replication initiator protein [Erwinia billingiae Eb661] gi|299064977|emb|CAX62097.1| Chromosomal replication initiator protein [Erwinia billingiae Eb661] Length = 463 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 150/474 (31%), Positives = 260/474 (54%), Gaps = 24/474 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRIQ-------GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + G + + R ++ P + +S + P++T S + + Sbjct: 63 LNDFCGTDVPLLRFEVGSKPVTRQISQPVMASAHASAPVQGSRPVHTRPSWDSMPAPAEL 122 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S ++++ F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 ---SYRSNVNTKHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 174 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 175 THLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQ 234 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 235 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 294 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 295 LETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 349 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 350 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 408 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 MAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|30018279|ref|NP_829910.1| chromosomal replication initiation protein [Bacillus cereus ATCC 14579] gi|206970479|ref|ZP_03231432.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH1134] gi|218235327|ref|YP_002364856.1| chromosomal replication initiation protein [Bacillus cereus B4264] gi|228924234|ref|ZP_04087505.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955739|ref|ZP_04117734.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961753|ref|ZP_04123356.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051158|ref|ZP_04194702.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH676] gi|229072954|ref|ZP_04206150.1| Chromosomal replication initiator protein dnaA [Bacillus cereus F65185] gi|229112902|ref|ZP_04242433.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-15] gi|229130735|ref|ZP_04259688.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-Cer4] gi|229148039|ref|ZP_04276378.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST24] gi|229153648|ref|ZP_04281824.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1550] gi|229181735|ref|ZP_04309058.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 172560W] gi|296500839|ref|YP_003662539.1| chromosomal replication initiation protein [Bacillus thuringiensis BMB171] gi|38257412|sp|Q81JD5|DNAA_BACCR RecName: Full=Chromosomal replication initiator protein DnaA gi|226735776|sp|B7HIH4|DNAA_BACC4 RecName: Full=Chromosomal replication initiator protein DnaA gi|29893819|gb|AAP07111.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 14579] gi|206735056|gb|EDZ52225.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH1134] gi|218163284|gb|ACK63276.1| chromosomal replication initiator protein DnaA [Bacillus cereus B4264] gi|228601768|gb|EEK59266.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 172560W] gi|228629834|gb|EEK86487.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1550] gi|228635464|gb|EEK91955.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST24] gi|228652752|gb|EEL08637.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-Cer4] gi|228670581|gb|EEL25894.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-15] gi|228710200|gb|EEL62178.1| Chromosomal replication initiator protein dnaA [Bacillus cereus F65185] gi|228722221|gb|EEL73622.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH676] gi|228797947|gb|EEM44957.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803967|gb|EEM50591.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835452|gb|EEM80822.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296321891|gb|ADH04819.1| chromosomal replication initiation protein [Bacillus thuringiensis BMB171] Length = 446 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 264/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L P+ N + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEDIDLPPVKPN-------PAQDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 AHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINGILK 446 >gi|91791370|ref|YP_561021.1| chromosomal replication initiation protein [Shewanella denitrificans OS217] gi|122969114|sp|Q12TC8|DNAA_SHEDO RecName: Full=Chromosomal replication initiator protein DnaA gi|91713372|gb|ABE53298.1| chromosomal replication initiator protein DnaA [Shewanella denitrificans OS217] Length = 462 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 252/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E+ +I R A A+ T + + + I + + Sbjct: 63 FTEQMGSNAPKLRFDIGSRPSARTVQPAPAAPRPTTGHTQTKARVGTAFNIQAEPMANAN 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 123 HRSNINPTYQFDNFVEGKSNQLGKAAAMQVAENPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 178 HAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 238 KDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ +N+ +EV VA+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MRKAQESGINLPDEVAFFVAKRLRSNVRELEGALNRVIANANFTGRPITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 412 LTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 461 >gi|85057979|ref|YP_453681.1| chromosomal replication initiation protein [Sodalis glossinidius str. 'morsitans'] gi|123725464|sp|Q2NX49|DNAA_SODGM RecName: Full=Chromosomal replication initiator protein DnaA gi|84778499|dbj|BAE73276.1| chromosomal replication initiator protein DnaA [Sodalis glossinidius str. 'morsitans'] Length = 464 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 149/472 (31%), Positives = 252/472 (53%), Gaps = 19/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP- 152 + + E+ + + ++ + S S + P Sbjct: 63 LNDFCGTDAPLLRFEVGSKPPQMAVLQPASQHASEAPSQAAVARPRPSRPSWDNAPVQPE 122 Query: 153 -VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTH Sbjct: 123 LSYRSNVNPKHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTH 177 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF 237 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE 297 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 TRVAIL-----MKKADENAIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAIT 352 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM LS Sbjct: 353 IDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALS 411 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 KELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 463 >gi|30260196|ref|NP_842573.1| chromosomal replication initiation protein [Bacillus anthracis str. Ames] gi|47525255|ref|YP_016604.1| chromosomal replication initiation protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183040|ref|YP_026292.1| chromosomal replication initiation protein [Bacillus anthracis str. Sterne] gi|49479264|ref|YP_034361.1| chromosomal replication initiation protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52145208|ref|YP_081620.1| chromosomal replication initiation protein [Bacillus cereus E33L] gi|65317469|ref|ZP_00390428.1| COG0593: ATPase involved in DNA replication initiation [Bacillus anthracis str. A2012] gi|165873037|ref|ZP_02217658.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0488] gi|167635044|ref|ZP_02393361.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0442] gi|167641739|ref|ZP_02399982.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0193] gi|170689462|ref|ZP_02880652.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0465] gi|170707519|ref|ZP_02897972.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0389] gi|177655268|ref|ZP_02936822.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0174] gi|190569280|ref|ZP_03022174.1| chromosomal replication initiator protein DnaA [Bacillus anthracis Tsiankovskii-I] gi|196036095|ref|ZP_03103495.1| chromosomal replication initiator protein DnaA [Bacillus cereus W] gi|196041966|ref|ZP_03109253.1| chromosomal replication initiator protein DnaA [Bacillus cereus NVH0597-99] gi|196045507|ref|ZP_03112738.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB108] gi|218901207|ref|YP_002449041.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH820] gi|227812679|ref|YP_002812688.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. CDC 684] gi|228918101|ref|ZP_04081629.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930495|ref|ZP_04093495.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228949211|ref|ZP_04111479.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094600|ref|ZP_04225667.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-42] gi|229124992|ref|ZP_04254166.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 95/8201] gi|229187718|ref|ZP_04314854.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BGSC 6E1] gi|229600569|ref|YP_002864658.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0248] gi|254687070|ref|ZP_05150928.1| chromosomal replication initiation protein [Bacillus anthracis str. CNEVA-9066] gi|254724147|ref|ZP_05185932.1| chromosomal replication initiation protein [Bacillus anthracis str. A1055] gi|254735164|ref|ZP_05192874.1| chromosomal replication initiation protein [Bacillus anthracis str. Western North America USA6153] gi|254742127|ref|ZP_05199814.1| chromosomal replication initiation protein [Bacillus anthracis str. Kruger B] gi|254755963|ref|ZP_05207995.1| chromosomal replication initiation protein [Bacillus anthracis str. Vollum] gi|254761357|ref|ZP_05213379.1| chromosomal replication initiation protein [Bacillus anthracis str. Australia 94] gi|300118809|ref|ZP_07056529.1| chromosomal replication initiation protein [Bacillus cereus SJ1] gi|38257418|sp|Q81W35|DNAA_BACAN RecName: Full=Chromosomal replication initiator protein DnaA gi|61212525|sp|Q63HG7|DNAA_BACCZ RecName: Full=Chromosomal replication initiator protein DnaA gi|61212595|sp|Q6HQ03|DNAA_BACHK RecName: Full=Chromosomal replication initiator protein DnaA gi|226735774|sp|B7JJB7|DNAA_BACC0 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777883|sp|C3P8P5|DNAA_BACAA RecName: Full=Chromosomal replication initiator protein DnaA gi|254777884|sp|C3LIC2|DNAA_BACAC RecName: Full=Chromosomal replication initiator protein DnaA gi|30253517|gb|AAP24059.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. Ames] gi|47500403|gb|AAT29079.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. 'Ames Ancestor'] gi|49176967|gb|AAT52343.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. Sterne] gi|49330820|gb|AAT61466.1| chromosomal replication initiator protein [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51978677|gb|AAU20227.1| chromosomal replication initiator protein [Bacillus cereus E33L] gi|164711249|gb|EDR16805.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0488] gi|167510293|gb|EDR85696.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0193] gi|167529518|gb|EDR92268.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0442] gi|170127515|gb|EDS96389.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0389] gi|170666564|gb|EDT17337.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0465] gi|172080195|gb|EDT65287.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0174] gi|190559587|gb|EDV13578.1| chromosomal replication initiator protein DnaA [Bacillus anthracis Tsiankovskii-I] gi|195991262|gb|EDX55230.1| chromosomal replication initiator protein DnaA [Bacillus cereus W] gi|196023714|gb|EDX62390.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB108] gi|196027221|gb|EDX65841.1| chromosomal replication initiator protein DnaA [Bacillus cereus NVH0597-99] gi|218539127|gb|ACK91525.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH820] gi|227005950|gb|ACP15693.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. CDC 684] gi|228595786|gb|EEK53470.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BGSC 6E1] gi|228658493|gb|EEL14159.1| Chromosomal replication initiator protein dnaA [Bacillus cereus 95/8201] gi|228688847|gb|EEL42678.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-42] gi|228810494|gb|EEM56847.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829214|gb|EEM74851.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841581|gb|EEM86697.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229264977|gb|ACQ46614.1| chromosomal replication initiator protein DnaA [Bacillus anthracis str. A0248] gi|298723777|gb|EFI64499.1| chromosomal replication initiation protein [Bacillus cereus SJ1] Length = 446 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 264/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L P N + + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEEIDLPPAKPNAA-------QDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 446 >gi|52078492|ref|YP_077283.1| chromosomal replication initiation protein [Bacillus licheniformis ATCC 14580] gi|52783856|ref|YP_089685.1| chromosomal replication initiation protein [Bacillus licheniformis ATCC 14580] gi|319648518|ref|ZP_08002734.1| chromosomal replication initiator protein dnaA [Bacillus sp. BT1B_CT2] gi|71151793|sp|Q65PM2|DNAA_BACLD RecName: Full=Chromosomal replication initiator protein DnaA gi|52001703|gb|AAU21645.1| DnaA [Bacillus licheniformis ATCC 14580] gi|52346358|gb|AAU38992.1| DnaA [Bacillus licheniformis ATCC 14580] gi|317389597|gb|EFV70408.1| chromosomal replication initiator protein dnaA [Bacillus sp. BT1B_CT2] Length = 446 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 154/469 (32%), Positives = 262/469 (55%), Gaps = 28/469 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ +++ ++ + +W + K HS+ + + ++ P F + W+++RYL I Sbjct: 3 NISDLWNQALGQIEKKLSKPSFETWMKSTKAHSLQGDTLIITAPNEFARDWLESRYLHLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + ++ ++ + + SPI + P + Sbjct: 63 ADTIYDLTGEELSIKFVI--------PQNQNEEDFMPKSPIKKMSKEEPADFPQNM---- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 162 HAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQFLAG 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 222 KEQTQEEFFHTFNTLHEETKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 282 IAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + K + I+DIQR+V + +NI D + +R ++V PRQ+AMYLS+ Sbjct: 337 LAAEALKDIIPSSKPKVITIKDIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYLSRE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MT S P+IG FG RDHTTV+HA K+ K+L D L+++++ +K + Sbjct: 397 MTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLSDDEQLQQQIKEIKEQL 445 >gi|225862058|ref|YP_002747436.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB102] gi|254777885|sp|C1ES08|DNAA_BACC3 RecName: Full=Chromosomal replication initiator protein DnaA gi|225789460|gb|ACO29677.1| chromosomal replication initiator protein DnaA [Bacillus cereus 03BB102] Length = 446 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 264/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L P N + + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEEIDLPPSKPNAA-------QDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 446 >gi|228942638|ref|ZP_04105170.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975568|ref|ZP_04136120.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982204|ref|ZP_04142493.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis Bt407] gi|228777556|gb|EEM25834.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis Bt407] gi|228784178|gb|EEM32205.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817064|gb|EEM63157.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937798|gb|AEA13694.1| chromosomal replication initiation [Bacillus thuringiensis serovar chinensis CT-43] Length = 446 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 264/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + S L P+ N + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQSEEDIDLPPVKRN-------PAQDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 AHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINGILK 446 >gi|154684519|ref|YP_001419680.1| chromosomal replication initiation protein [Bacillus amyloliquefaciens FZB42] gi|166201860|sp|A7Z0C3|DNAA_BACA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|154350370|gb|ABS72449.1| DnaA [Bacillus amyloliquefaciens FZB42] Length = 446 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 160/473 (33%), Positives = 267/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL Sbjct: 1 ME-NILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I E E+ V+ V + ++ P S P Sbjct: 60 HLIADTIYELTGE----ELSVKFVIPQNQDEENFLPKPQVKKAAKEEPSDFPQ------- 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 109 -----SMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPKVITIKEIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ MT S P+IG FG RDHTTV+HA K+ K+L D L+++V+ +K L+ Sbjct: 394 SREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLIDDEQLQQQVKEIKELLK 446 >gi|238897212|ref|YP_002921960.1| chromosomal replication initiation protein [Klebsiella pneumoniae NTUH-K2044] gi|238549542|dbj|BAH65893.1| chromosomal replication initiation protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 467 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 255/475 (53%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 + E+ + + + + + + + T + I+ Sbjct: 63 LNDFCGADAPQLRFEVGAKPASSLQKGAVSPAAAAIPAAQVQTARAAPTIVRPGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|330005213|ref|ZP_08305172.1| replication initiator protein DnaA [Klebsiella sp. MS 92-3] gi|328536345|gb|EGF62707.1| replication initiator protein DnaA [Klebsiella sp. MS 92-3] Length = 471 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 255/475 (53%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 + E+ + + + + + + + T + I+ Sbjct: 67 LNDFCGADAPQLRFEVGAKPASSLQKGAVSPAAAAIPAAQVQTARAAPTIVRPGWDNVPA 126 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|42779082|ref|NP_976329.1| chromosomal replication initiation protein [Bacillus cereus ATCC 10987] gi|206975777|ref|ZP_03236688.1| chromosomal replication initiator protein DnaA [Bacillus cereus H3081.97] gi|217957582|ref|YP_002336124.1| chromosomal replication initiation protein [Bacillus cereus AH187] gi|222093775|ref|YP_002527822.1| chromosomal replication initiation protein [Bacillus cereus Q1] gi|229142238|ref|ZP_04270762.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST26] gi|229199687|ref|ZP_04326330.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1293] gi|61212644|sp|Q73FK5|DNAA_BACC1 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735777|sp|B7HPR7|DNAA_BACC7 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777886|sp|B9IYG8|DNAA_BACCQ RecName: Full=Chromosomal replication initiator protein DnaA gi|42734997|gb|AAS38937.1| chromosomal replication initiator protein DnaA [Bacillus cereus ATCC 10987] gi|206745871|gb|EDZ57267.1| chromosomal replication initiator protein DnaA [Bacillus cereus H3081.97] gi|217064344|gb|ACJ78594.1| chromosomal replication initiator protein DnaA [Bacillus cereus AH187] gi|221237820|gb|ACM10530.1| chromosomal replication initiator protein DnaA [Bacillus cereus Q1] gi|228583782|gb|EEK41957.1| Chromosomal replication initiator protein dnaA [Bacillus cereus m1293] gi|228641256|gb|EEK97563.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST26] gi|324323995|gb|ADY19255.1| chromosomal replication initiation protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 446 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 263/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L P N + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEEIDLPPSKPN-------SAQDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 446 >gi|228988718|ref|ZP_04148803.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229159050|ref|ZP_04287106.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 4342] gi|228624469|gb|EEK81240.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 4342] gi|228771030|gb|EEM19511.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 446 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 156/472 (33%), Positives = 263/472 (55%), Gaps = 29/472 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L P N + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEEIDLPPSKPN-------SAQDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDIL 445 >gi|114561189|ref|YP_748702.1| chromosomal replication initiation protein [Shewanella frigidimarina NCIMB 400] gi|122301225|sp|Q08A51|DNAA_SHEFN RecName: Full=Chromosomal replication initiator protein DnaA gi|114332482|gb|ABI69864.1| chromosomal replication initiator protein DnaA [Shewanella frigidimarina NCIMB 400] Length = 461 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 151/470 (32%), Positives = 255/470 (54%), Gaps = 18/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E+ +I R A P ++ + + + + S + I+P Sbjct: 63 FTEQMGSNAPKLRFDIGSRPSARPVAPAPVAAKPVNRQTKAQVG-TTSFNTQAEPIINPN 121 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++ AA ++E Y NPLF++ GLGKTHLL Sbjct: 122 HRSNINPTYQFDNFVEGKSNQLGKAAALQVSENPGGAY-----NPLFLYGGTGLGKTHLL 176 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 177 HAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFAN 236 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 237 KDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETR 296 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 297 VAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 351 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK Sbjct: 352 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKE 410 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 411 LTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 460 >gi|218895142|ref|YP_002443553.1| chromosomal replication initiator protein DnaA [Bacillus cereus G9842] gi|228905433|ref|ZP_04069388.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 4222] gi|228911329|ref|ZP_04075133.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 200] gi|229193740|ref|ZP_04320681.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 10876] gi|226735775|sp|B7IS20|DNAA_BACC2 RecName: Full=Chromosomal replication initiator protein DnaA gi|218545184|gb|ACK97578.1| chromosomal replication initiator protein DnaA [Bacillus cereus G9842] gi|228589765|gb|EEK47643.1| Chromosomal replication initiator protein dnaA [Bacillus cereus ATCC 10876] gi|228848347|gb|EEM93197.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 200] gi|228854253|gb|EEM98956.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis IBL 4222] Length = 446 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 264/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L P+ N + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEDIDLPPVKRN-------PAQDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 AHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINGILK 446 >gi|261346742|ref|ZP_05974386.1| DNA biosynthesis protein [Providencia rustigianii DSM 4541] gi|282565142|gb|EFB70677.1| DNA biosynthesis protein [Providencia rustigianii DSM 4541] Length = 465 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 260/473 (54%), Gaps = 20/473 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYINNINEL 62 Query: 97 FQEEHSRIQG---VEILVRSVALPSVE---KTASSPSITKLSPINTNISKSPIILGKQTI 150 + E+ + + + V + +++ ++ + + + S K Sbjct: 63 LNDFCGSDAPALHFEVGNKPLTVAPVSTQTRVSNNNAMPSFTMPSAPVKPSWDNSNKVQP 122 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S ++ + F F+EG SN++A AA+ +AE Y NPLF++ GLGKT Sbjct: 123 DVAYRSNVNPKHTFDNFVEGKSNQLARAAARQVAENPGGAY-----NPLFLYGGTGLGKT 177 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N+ ++ + N RVVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 HLLHAVGNSIMQHKANARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQF 237 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPEL 297 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F + Sbjct: 298 ETRVAIL-----MKKADENEIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAI 352 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L Sbjct: 353 TIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAL 411 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 AKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 464 >gi|229164440|ref|ZP_04292368.1| Chromosomal replication initiator protein dnaA [Bacillus cereus R309803] gi|228619045|gb|EEK75943.1| Chromosomal replication initiator protein dnaA [Bacillus cereus R309803] Length = 446 Score = 514 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 155/473 (32%), Positives = 263/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + P N + + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEEIDFPPSKPNAA-------QDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 446 >gi|170724371|ref|YP_001758397.1| chromosomal replication initiation protein [Shewanella woodyi ATCC 51908] gi|226735847|sp|B1KCX3|DNAA_SHEWM RecName: Full=Chromosomal replication initiator protein DnaA gi|169809718|gb|ACA84302.1| chromosomal replication initiator protein DnaA [Shewanella woodyi ATCC 51908] Length = 462 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 151/470 (32%), Positives = 253/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMDGDTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E+ +I R A ++ TA+ S + + + + + Sbjct: 63 FTEQMGSDAPKLRFDIGSRPSAPKPIQATAAVVKPKLESSPQKSQTSFNVNAPEPAATAN 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 123 HRSNINPTYQFENFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N IK +PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 178 HAVGNGIIKNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 238 KDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+ ++ E K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDTKEDYANLIRTLS 461 >gi|319651099|ref|ZP_08005233.1| chromosomal replication initiator protein dnaA [Bacillus sp. 2_A_57_CT2] gi|317397269|gb|EFV77973.1| chromosomal replication initiator protein dnaA [Bacillus sp. 2_A_57_CT2] Length = 448 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 153/473 (32%), Positives = 265/473 (56%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ + ++ ++ + +W + K HS+ + + + P F + W++ RY Sbjct: 1 ME-NIADLWNNALANIEKKISKPSFDTWLKSTKAHSLQGDTLIVKAPNEFARDWLEERYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I+ + + GV+ ++ E+ P K + P+ + Sbjct: 60 QLISGILYDITGEELGVKFII---PQNQSEEEVDLPLPPKKKKPEEEQPELPLTM----- 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 112 -------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P+ +VVYL++E F F ++IRDN A + +D RN+D+LLIDD+QF Sbjct: 160 HLMHAIGHYVLDHNPSAKVVYLSSEKFTNEFINSIRDNKAGDFRDKYRNVDVLLIDDIQF 219 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 220 LAGKEQTQEEFFHTFNTLHEESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 280 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + I +IQR+V +H+N+ D + +R ++V PRQ+AMYL Sbjct: 335 NADLAAEALKDIIPSSKPKVITIHEIQRVVGEHFNVKLEDFKAKKRTKSVAFPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ KML+ D +K+++ + ++ Sbjct: 395 SRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKMLQADSQFEKQLKEINEMLK 447 >gi|296330037|ref|ZP_06872521.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672699|ref|YP_003864370.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296153076|gb|EFG93941.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410942|gb|ADM36060.1| chromosomal replication initiation protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 446 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 266/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL Sbjct: 1 ME-NILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I E E+ ++ V + + P + + S P + Sbjct: 60 HLIADTIYELTGE----ELSIKFVIPQNQDVEDFMPKPQVKKAVKEDTSDFPQNM----- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 111 -------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPKVITIKEIQRVVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ MT S P+IG FG RDHTTV+HA K+ K+L D L++ V+ +K + Sbjct: 394 SREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLAEDEQLQQHVKEIKEQLK 446 >gi|229176165|ref|ZP_04303657.1| Chromosomal replication initiator protein dnaA [Bacillus cereus MM3] gi|228607324|gb|EEK64654.1| Chromosomal replication initiator protein dnaA [Bacillus cereus MM3] Length = 446 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 264/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L P N + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEEIDLPPSKPN-------SAQDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L +++ + K + I DIQ+ V Y I D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKNIIPNSKPKIISIYDIQKAVGDVYQIKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDYSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 446 >gi|206580988|ref|YP_002235886.1| chromosomal replication initiator protein DnaA [Klebsiella pneumoniae 342] gi|288932893|ref|YP_003436952.1| chromosomal replication initiator protein DnaA [Klebsiella variicola At-22] gi|226735819|sp|B5XT51|DNAA_KLEP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|206570046|gb|ACI11822.1| chromosomal replication initiator protein DnaA [Klebsiella pneumoniae 342] gi|288887622|gb|ADC55940.1| chromosomal replication initiator protein DnaA [Klebsiella variicola At-22] Length = 467 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 254/475 (53%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 + E+ + + + + + + + T I+ Sbjct: 63 LNDFCGADAPQLRFEVGAKPASSLQKGAVSPAAAAIPAAQVQTARVAPTIVRPGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 466 >gi|290511689|ref|ZP_06551057.1| chromosomal replication initiator protein DnaA [Klebsiella sp. 1_1_55] gi|289775479|gb|EFD83479.1| chromosomal replication initiator protein DnaA [Klebsiella sp. 1_1_55] Length = 471 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 254/475 (53%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 + E+ + + + + + + + T I+ Sbjct: 67 LNDFCGADAPQLRFEVGAKPASSLQKGAVSPAAAAIPAAQVQTARVAPTIVRPGWDNVPA 126 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIVARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|229035147|ref|ZP_04189093.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1271] gi|228728213|gb|EEL79243.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1271] Length = 446 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 262/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L P N Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEEIDLPPSKPN-------SAHDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y I D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQIKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 446 >gi|300721090|ref|YP_003710358.1| DNA replication initiator protein [Xenorhabdus nematophila ATCC 19061] gi|297627575|emb|CBJ88094.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Xenorhabdus nematophila ATCC 19061] Length = 462 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 150/471 (31%), Positives = 255/471 (54%), Gaps = 19/471 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVREKYINNINLL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP---- 152 + + + P ++S I P+ T S S + + Sbjct: 63 LNDFCGPEVPL-LRFEVGNKPVSPNQSASQKIIADMPVATAPSSSSVRPSWDNVKTQPEL 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 122 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 176 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N+ + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 177 LHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 236 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 237 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 296 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 297 RVAIL-----MKKADENQIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 352 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 410 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|308171892|ref|YP_003918597.1| chromosomal replication initiator protein DnaA [Bacillus amyloliquefaciens DSM 7] gi|307604756|emb|CBI41127.1| chromosomal replication initiator protein DnaA [Bacillus amyloliquefaciens DSM 7] gi|328909960|gb|AEB61556.1| chromosomal replication initiator protein DnaA [Bacillus amyloliquefaciens LL3] Length = 446 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 159/473 (33%), Positives = 266/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL Sbjct: 1 ME-NILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I E E+ V+ V + ++ P S P Sbjct: 60 HLIADTIYELTGE----ELSVKFVIPQNQDEENFMPKPQVKKAAKEEPSDFPQ------- 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 109 -----SMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPKVITIKEIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ MT S P+IG FG RDHTTV+HA K+ K+L D L+++V+ +K + Sbjct: 394 SREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLIDDEQLQQQVKEIKEQLK 446 >gi|262273130|ref|ZP_06050947.1| chromosomal replication initiator protein dnaA [Grimontia hollisae CIP 101886] gi|262222886|gb|EEY74194.1| chromosomal replication initiator protein dnaA [Grimontia hollisae CIP 101886] Length = 461 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 157/474 (33%), Positives = 257/474 (54%), Gaps = 22/474 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ + ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQRLQEDLPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSR---IQGVEILVRSVAL--PSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + E+ + VA+ P + +P P+ +P + Sbjct: 61 QLLNDFCGNDLPLLRFEVGSKPVAVAAPPSQPATPAPVAPVSKPVGRTWEPAPSPVQSDV 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S ++ + F+ F+EG SN++AL AA+ +A+ Y NPLF++ GLGK Sbjct: 121 ---NHRSNVNPKHKFTNFVEGKSNQLALAAARQVADNPGAAY-----NPLFLYGGTGLGK 172 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ NA R+ + RVVY+ +E F+ A+++N K R++D LLIDD+Q Sbjct: 173 THLLHAVGNAISDRKADARVVYMHSERFVQDMVKALQNNQIEEFKRYYRSVDALLIDDIQ 232 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 233 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 292 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ED + + +EV +A+ + ++ REL+GA N+++ +F Sbjct: 293 LETRVAIL-----MKKAEDHNIRLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 347 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQVAM Sbjct: 348 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADLLSKRRSRSVARPRQVAMA 406 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LSK +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 407 LSKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 460 >gi|328551701|gb|AEB22193.1| chromosomal replication initiation protein [Bacillus amyloliquefaciens TA208] Length = 446 Score = 514 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 159/473 (33%), Positives = 266/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL Sbjct: 1 ME-NILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I E E+ V+ V + ++ P S P Sbjct: 60 HLIADTIYELTGE----ELSVKFVIPQNQDEENFMPKPQVEKAAKEEPSDFPQ------- 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 109 -----SMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPKVITIKEIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ MT S P+IG FG RDHTTV+HA K+ K+L D L+++V+ +K + Sbjct: 394 SREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLIDDEQLQQQVKEIKEQLK 446 >gi|16077069|ref|NP_387882.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. 168] gi|221307810|ref|ZP_03589657.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. 168] gi|221312132|ref|ZP_03593937.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317065|ref|ZP_03598359.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. JH642] gi|221321328|ref|ZP_03602622.1| chromosomal replication initiation protein [Bacillus subtilis subsp. subtilis str. SMY] gi|321313668|ref|YP_004205955.1| chromosomal replication initiation protein [Bacillus subtilis BSn5] gi|118704|sp|P05648|DNAA_BACSU RecName: Full=Chromosomal replication initiator protein DnaA gi|40014|emb|CAA26217.1| unnamed protein product [Bacillus subtilis] gi|467391|dbj|BAA05237.1| initiation protein of replicaton [Bacillus subtilis] gi|2632268|emb|CAB11777.1| chromosomal replication initiator protein DnaA [Bacillus subtilis subsp. subtilis str. 168] gi|291482370|dbj|BAI83445.1| chromosomal replication initiation protein [Bacillus subtilis subsp. natto BEST195] gi|320019942|gb|ADV94928.1| chromosomal replication initiation protein [Bacillus subtilis BSn5] Length = 446 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 266/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ ++++ ++ + +W + K HS+ + + ++ P F + W+++RYL Sbjct: 1 ME-NILDLWNQALAQIEKKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I E E+ ++ V + + P + + S P + Sbjct: 60 HLIADTIYELTGE----ELSIKFVIPQNQDVEDFMPKPQVKKAVKEDTSDFPQNM----- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 111 -------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPKVITIKEIQRVVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ MT S P+IG FG RDHTTV+HA K+ K+L D L++ V+ +K + Sbjct: 394 SREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLADDEQLQQHVKEIKEQLK 446 >gi|291086463|ref|ZP_06355876.2| hypothetical protein CIT292_10556 [Citrobacter youngae ATCC 29220] gi|291068324|gb|EFE06433.1| DNA replication initiator protein [Citrobacter youngae ATCC 29220] Length = 471 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 154/475 (32%), Positives = 256/475 (53%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 ---FQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLSPINTNISKSPIILG-KQ 148 F + E+ + V P A + ++ P T + P Sbjct: 67 LNNFCGADAPQLRFEVGTKPVTQTLKTPVNNVVAPAHVAQQVQPQRTAPAARPGWDNVPA 126 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|229099916|ref|ZP_04230839.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-29] gi|228683531|gb|EEL37486.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-29] Length = 446 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 265/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L PI N + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEDIDLPPIKKN-------RAQDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 THLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLISKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 446 >gi|157959831|ref|YP_001499865.1| chromosomal replication initiation protein [Shewanella pealeana ATCC 700345] gi|189083279|sp|A8GYE3|DNAA_SHEPA RecName: Full=Chromosomal replication initiator protein DnaA gi|157844831|gb|ABV85330.1| chromosomal replication initiator protein DnaA [Shewanella pealeana ATCC 700345] Length = 461 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 152/472 (32%), Positives = 258/472 (54%), Gaps = 22/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + + + + P F+ W++++YL I + Sbjct: 4 SLWQQCIARLQDELSAQQFSMWIRPLQA-EMEGDTLVIYAPNRFVLDWVRDKYLNIINQF 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG--KQTIS 151 F E+ +I R A P V+ TA ++ P+ ++K + + Sbjct: 63 FTEQMGSDAPSLRFDIGSRPSAKPVVQATA---AVRTSRPVTREVTKPSFNTPHAEPMAN 119 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTH Sbjct: 120 ANHRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTH 174 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 175 LLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFF 234 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+LL+ Q++ +D+ P E++ ++ R++SR G++V + + E Sbjct: 235 ANKDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELE 294 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 295 TRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPIT 349 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+AM LS Sbjct: 350 IDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALS 408 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 409 KELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 460 >gi|229118979|ref|ZP_04248324.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-3] gi|228664504|gb|EEL20000.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock1-3] Length = 446 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 264/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L PI N + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEDIDLPPIKKN-------RAQDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 THLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINDILK 446 >gi|290550|gb|AAA62053.1| dnaA (CG Site No. 851) [Escherichia coli] Length = 471 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 147/475 (30%), Positives = 246/475 (51%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 67 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 126 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNXLLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+ P Q+AM Sbjct: 357 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSGXGPGQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|330827701|ref|YP_004390653.1| chromosomal replication initiator protein DnaA [Aeromonas veronii B565] gi|328802837|gb|AEB48036.1| Chromosomal replication initiator protein dnaA [Aeromonas veronii B565] Length = 456 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 150/467 (32%), Positives = 258/467 (55%), Gaps = 17/467 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL + + Sbjct: 4 SLWQQCLNRLQDELPSAEFSMWIRPLQA-ELSDNTLTLYAPNRFVLDWVRDKYLIRVNGI 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + G + P A +P + +P+N N+ KS + P S Sbjct: 63 INELCG-VDGPALRFDIGNRPHPVAVARAP-VQGAAPVN-NLQKSWESKAEAKPEPNHKS 119 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 + + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ Sbjct: 120 NTNVNYTFENFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAV 174 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + + + +V+Y+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 GNAIKESKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 234 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +I Sbjct: 235 SQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAI 294 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + ++ ++++ +EV +A+ + ++ REL+GA N+++ +F + + Sbjct: 295 L-----MRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVR 349 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 350 EALRDLLALQ-EKLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTN 408 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 HSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIKEDYSNLIRTLS 455 >gi|120596834|ref|YP_961408.1| chromosomal replication initiation protein [Shewanella sp. W3-18-1] gi|146291112|ref|YP_001181536.1| chromosomal replication initiation protein [Shewanella putrefaciens CN-32] gi|166215331|sp|A4Y1A4|DNAA_SHEPC RecName: Full=Chromosomal replication initiator protein DnaA gi|166215333|sp|A1RDX7|DNAA_SHESW RecName: Full=Chromosomal replication initiator protein DnaA gi|120556927|gb|ABM22854.1| chromosomal replication initiator protein DnaA [Shewanella sp. W3-18-1] gi|145562802|gb|ABP73737.1| chromosomal replication initiator protein DnaA [Shewanella putrefaciens CN-32] gi|319424418|gb|ADV52492.1| chromosomal replication initiator protein DnaA [Shewanella putrefaciens 200] Length = 461 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 253/470 (53%), Gaps = 18/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++ +Y+ I + Sbjct: 4 SLWQQCIGRLQDELPAQQFSMWIRPLQA-EMDGDTLVLYAPNRFVLDWVREKYINIINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT---ISPV 153 F E+ ++ + PS +K +P T +P + Q + Sbjct: 63 FTEQMGSDAP-KLRFDIGSRPSAKKFEPAPVATVRAPNTQTKATVGTYFNTQAEPIANAN 121 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 122 HRSNINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHLL 176 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 177 HAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFAN 236 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R Sbjct: 237 KDRSQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETR 296 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 297 VAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 351 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK Sbjct: 352 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKE 410 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 411 LTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 460 >gi|167461551|ref|ZP_02326640.1| chromosomal replication initiation protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 452 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 251/473 (53%), Gaps = 26/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++ V S ++ ++ + +W + + V + P NF K W+++RY Sbjct: 1 MESHNPDLWQQVLSIIQTKLSKPSFDTWLKSTRATVFTDTYVVICAPNNFAKEWLESRYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I+ E + ++ +V S + P I K + + Sbjct: 61 KMISSTIYEFLGKQVEIKFIVESEEDQVNPVPEAVPDIPKGPALGQEEN----------- 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + ++SR+ F TF+ G NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 110 ---YSNMMNSRYTFDTFVIGQGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P RV+Y+++E F F +A+RDN + ++ R ID+LLIDD+QF Sbjct: 162 HLMHAIGHYVLEHNPEARVLYISSEKFTNEFINAVRDNRGEDFRNKYRTIDVLLIDDIQF 221 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 222 ISGKEGTQEEFFHTFNALHEEGKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDL 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L I E ++++A + T+ REL+GA ++V S + Sbjct: 282 ETRIAILRK-----KAKAENLEIPNEAMLYIANQIDTNIRELEGALIRVVAYSSLINQDI 336 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E L ++ + + + I+DIQ+ V + Y + D + +R + V PRQVAMYL Sbjct: 337 TTHLAAEALKDIIPSSRPRVITIQDIQQKVGEFYGLKLEDFKARKRTKAVAFPRQVAMYL 396 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ + ++ D L K ++ + I Sbjct: 397 SRELTDFSLPKIGDAFGGRDHTTVIHAHEKISEAVKKDQELYKIIQSITEKIK 449 >gi|237729024|ref|ZP_04559505.1| chromosomal replication initiation protein [Citrobacter sp. 30_2] gi|226909646|gb|EEH95564.1| chromosomal replication initiation protein [Citrobacter sp. 30_2] Length = 471 Score = 513 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 153/475 (32%), Positives = 255/475 (53%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 66 Query: 97 ---FQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLSPINTNISKSPIILG-KQ 148 F + E+ + V P A + ++ P + P Sbjct: 67 LNNFCGADAPQLRFEVGTKPVTQTLKTPVNNVVAPAHVAQQVQPQRAAPAARPGWDNVPA 126 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 127 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 181 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 182 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 241 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 242 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 301 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 302 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 356 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 357 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAM 415 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 416 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 470 >gi|86356015|ref|YP_467907.1| chromosomal replication initiation protein [Rhizobium etli CFN 42] gi|86280117|gb|ABC89180.1| chromosomal replication initiator protein [Rhizobium etli CFN 42] Length = 516 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 311/519 (59%), Positives = 376/519 (72%), Gaps = 20/519 (3%) Query: 1 MQLREVAACIQENDVEIAE--KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASW 58 MQ+ + A +N + + +V + E+ +F VS+RLK QVGPDVYASW Sbjct: 1 MQMNTMMAGGLDNGDAAPQAFGSIRQEVGEAKAEMKQSILFERVSARLKAQVGPDVYASW 60 Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS 118 F RLK HSV ++V LSVPT FLK+WI NRYL+ IT LFQ E I +EILVR+ Sbjct: 61 FARLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITGLFQAEDPEIMKIEILVRTATRSG 120 Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTI---------------SPVFGSPLDSRFV 163 ++ +P S G+ +P+FGSPLDSRF Sbjct: 121 MKAADEVVQPEPAAPAQMRRPPSAQPAGQAVQQAVSAVAAARPASLGTPLFGSPLDSRFT 180 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TF+EGSSNRVAL AA++IAEV G VR NPLF+H++VGLGKTHLLQAIANA+++ Sbjct: 181 FDTFVEGSSNRVALAAAKTIAEV---GSGAVRFNPLFVHSTVGLGKTHLLQAIANAAVQN 237 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHL 283 LRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDLL+IDDMQFLQGK+IQHEFCHL Sbjct: 238 PRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHL 297 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 LN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ L DYEMR ILK RLA + Sbjct: 298 LNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRRLAAA 357 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT 403 + EDP L I ++L HVAR +T SGREL+GAFNQL+FR SF P L+ E DELL+HLV + Sbjct: 358 RLEDPSLEIPADLLQHVARNITASGRELEGAFNQLIFRRSFEPNLSIERVDELLAHLVGS 417 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 GE +++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK +TPRSFPEIGRR Sbjct: 418 GEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRR 477 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTVLHAVRK+E+++ D L E+ELLKRLI+E Sbjct: 478 FGGRDHTTVLHAVRKIEELISGDTKLSHEIELLKRLINE 516 >gi|284007063|emb|CBA72338.1| chromosomal replication initiator protein [Arsenophonus nasoniae] Length = 461 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 154/470 (32%), Positives = 262/470 (55%), Gaps = 18/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++Y+ I +L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYINNINEL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + E+ + PS T ++ + T +PIN+ I S Q Sbjct: 63 LSDFCGSDVPALKFEVGNKPQITPSGASTHTAANKTISTPINSIIRPSWDNTQVQP-EIA 121 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S ++ + F+ F+EG SN++A AA +A+ Y NPLF++ GLGKTHLL Sbjct: 122 YRSNVNPKHTFNNFVEGKSNQLARAAASQVADNPGGAY-----NPLFLYGGTGLGKTHLL 176 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + R+ N +VVY+ +E F+ A+++N + K R++D LLIDD+QF Sbjct: 177 HAVGNNIMARKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDIQFFAN 236 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 237 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 296 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ ++ + +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 297 VAIL-----MKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITID 351 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 352 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKE 410 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 460 >gi|197286950|ref|YP_002152822.1| chromosomal replication initiator protein [Proteus mirabilis HI4320] gi|227354809|ref|ZP_03839226.1| DNA-directed DNA replication initiator protein [Proteus mirabilis ATCC 29906] gi|118708|sp|P22837|DNAA_PROMI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735833|sp|B4F0U5|DNAA_PROMH RecName: Full=Chromosomal replication initiator protein DnaA gi|150878|gb|AAA83958.1| dnaA [Proteus mirabilis] gi|194684437|emb|CAR46152.1| chromosomal replication initiator protein [Proteus mirabilis HI4320] gi|227165127|gb|EEI49958.1| DNA-directed DNA replication initiator protein [Proteus mirabilis ATCC 29906] Length = 466 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 263/474 (55%), Gaps = 21/474 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQHCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVREKYINNINAL 62 Query: 97 FQEEHSRI---QGVEILVRSVAL---PSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + E+ + V+ SV KT + P++ + + S + + Sbjct: 63 LVDFCGSDVPSLRFEVGNKPVSARTTESVPKTVTHPAVNSTPTNSQPVRPSWDNQPQSQL 122 Query: 151 SPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGK Sbjct: 123 PELNYRSNVNPKHKFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N+ ++R+ N +VVY+ +E F+ A+++N + K R++D LLIDD+Q Sbjct: 178 THLLHAVGNSIMERKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDIQ 237 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + Sbjct: 238 FFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPE 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + ++ ++ + +EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 LETRVAIL-----MKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRA 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 ITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMA 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 LAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|212632925|ref|YP_002309450.1| chromosomal replication initiation protein [Shewanella piezotolerans WP3] gi|226735846|sp|B8CH71|DNAA_SHEPW RecName: Full=Chromosomal replication initiator protein DnaA gi|212554409|gb|ACJ26863.1| Chromosomal replication initiator protein DnaA [Shewanella piezotolerans WP3] Length = 461 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 151/471 (32%), Positives = 258/471 (54%), Gaps = 20/471 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + + + + P F+ W++++YL I + Sbjct: 4 SLWQQCIARLQDELSAQQFSMWIRPLQA-EMEGDTLVIYAPNRFVLDWVRDKYLNIINQF 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTAS-SPSITKLSPINTNISKSPIILGKQTISP 152 F E+ +I R A P V+ TA+ P + +P + I+ Sbjct: 63 FTEQMGADAPKLRFDIGSRPSAKPVVQATAAIRPKPAASKAVEKPTFNAPQ--AEPAITA 120 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S ++ + F F+EG SN++ AA ++E Y NPLF++ GLGKTHL Sbjct: 121 NHRSNINPTYQFDNFVEGKSNQLGKAAALQVSENPGGAY-----NPLFLYGGTGLGKTHL 175 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N IK +P+ +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 176 LHAVGNGIIKNKPDAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFA 235 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ Q++ +D+ P E++ ++ R++SR G++V + + E Sbjct: 236 NKDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELET 295 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 296 RVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITI 350 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+AM LSK Sbjct: 351 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSK 409 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 410 ELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 460 >gi|269103820|ref|ZP_06156517.1| chromosomal replication initiator protein dnaA [Photobacterium damselae subsp. damselae CIP 102761] gi|268163718|gb|EEZ42214.1| chromosomal replication initiator protein dnaA [Photobacterium damselae subsp. damselae CIP 102761] Length = 474 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 155/484 (32%), Positives = 259/484 (53%), Gaps = 29/484 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I Sbjct: 2 SSSLWLQCLQRLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNIN 60 Query: 95 KLFQEEHSR---IQGVEILVRSVALPSVEK------TASSPSITKLSPINTNISKSPIIL 145 +L E + I E+ + ++ PS+ T + + +P + P + Sbjct: 61 RLLNEFCGQDVPILRFEVGSKPISAPSITPAPAPILTPTPIPVVTPAPAPIEAAVMPADI 120 Query: 146 GKQTISPVF------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 P S ++ + F+ F+EG SN++ L A + +A+ Y NPL Sbjct: 121 LPAVAHPAAQQAGGCRSNVNPKHNFNNFVEGKSNQLGLAACRQVADNPGAAY-----NPL 175 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 F++ GLGKTHLL A+ NA R+PN +VVY+ +E F+ A+++N K R+ Sbjct: 176 FLYGGTGLGKTHLLHAVGNAIADRKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRS 235 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR Sbjct: 236 VDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGW 295 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + + E R +IL + + ED + + +EV +A+ + ++ REL+GA N++ Sbjct: 296 GLTVAIEPPELETRVAIL-----MKKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRV 350 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + +F +T + E L L+ K + I++IQ+ VA++Y I D+LS RR R+ Sbjct: 351 IANANFTGRAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRS 409 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L Sbjct: 410 VARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLI 469 Query: 498 RLIS 501 R +S Sbjct: 470 RTLS 473 >gi|294138802|ref|YP_003554780.1| chromosomal replication initiator protein DnaA [Shewanella violacea DSS12] gi|293325271|dbj|BAJ00002.1| chromosomal replication initiator protein DnaA [Shewanella violacea DSS12] Length = 462 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 253/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ RL++++ ++ W + L+ + N + L P F+ W++++Y+ I + Sbjct: 4 TLWQQCLGRLQDELSAQQFSMWIRPLQA-EMDGNTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E+ +I + A ++ T + + + + + I Sbjct: 63 FTEQMGSDAPKLRFDIGSKPAAPRPIQATPAMAPPRVQMNTRPAKTTFNMNMPEPAIMAN 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 123 HRSNINPAYQFENFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ NA IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 178 HAVGNAIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ QV+ +D+ P E++ ++ R++SR G++V + + E R Sbjct: 238 KDRSQEEFFHTFNALLEGNHQVILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MRKAQESGVNLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 412 LTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 461 >gi|1352278|sp|P29440|DNAA_SERMA RecName: Full=Chromosomal replication initiator protein DnaA gi|407186|gb|AAA02924.1|AAA02924 DnaA [Serratia marcescens] Length = 464 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 150/472 (31%), Positives = 254/472 (53%), Gaps = 19/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP- 152 + + E+ + + + +S S +P + S P Sbjct: 63 LNDFCGTDAPLLRFEVGSKPITQVISQTVTASVSSAPAAPAARTAAPSRPSWDNAAAQPE 122 Query: 153 -VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTH Sbjct: 123 LSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTH 177 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFF 237 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 ANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELE 297 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 TRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAIT 352 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+ Sbjct: 353 IDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALA 411 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 KELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 463 >gi|15612564|ref|NP_240867.1| chromosomal replication initiation protein [Bacillus halodurans C-125] gi|14194694|sp|Q9RCA2|DNAA_BACHD RecName: Full=Chromosomal replication initiator protein DnaA gi|5672647|dbj|BAA82685.1| 78%-identity [Bacillus halodurans] gi|10172613|dbj|BAB03720.1| initiation of chromosome replication [Bacillus halodurans C-125] Length = 449 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 152/472 (32%), Positives = 260/472 (55%), Gaps = 27/472 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ ++ +V + +W ++ K +S+ + + ++ P F + W++ Y Sbjct: 1 ME-NIHDLWERALKSMEKKVSKPSFETWLKQTKANSIEDSTIIITAPNEFARDWLEKHYD 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ P+ P K P+ Sbjct: 60 ELISETIDDLTGVRLYPKFVI--------------PTSQLDEPFVEQELKKPMKQPPAQN 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 GEMPNNMLNDKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + PN +VVYL++E F F +AIRDN A+N ++ RN+D+LLIDD+QF Sbjct: 161 HLMHAIGHYVMDHNPNAKVVYLSSEKFTNEFINAIRDNKAVNFRNKYRNVDVLLIDDIQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 221 LAGKEQTQEEFFHTFNALHEDNKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + T+ REL+GA ++V S + Sbjct: 281 ETRIAILRK-----KAKAENLDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINQDM 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + + I DIQ+ V +++++ D + +R ++V PRQ+AMYL Sbjct: 336 NADLAAEALKDIIPNAKPRVLTITDIQKTVGEYFHVKLEDFKAKKRTKSVAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ +T S P+IG FG RDHTTV+HA K+ K+L TD L+ +++ + + Sbjct: 396 SRELTDASLPKIGSEFGGRDHTTVIHAHEKISKLLSTDQELQDKIQDISDKL 447 >gi|290473095|ref|YP_003465956.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Xenorhabdus bovienii SS-2004] gi|289172389|emb|CBJ79156.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Xenorhabdus bovienii SS-2004] Length = 462 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 151/471 (32%), Positives = 254/471 (53%), Gaps = 19/471 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVREKYINNINLL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL----GKQTISP 152 + + + P ++S I PI T S + K Sbjct: 63 LNDFCGPEVPL-LRFEVGNKPVSPNQSTSQKIIANMPIATAPSSLSVRPSWDNAKAQPEL 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 122 SYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 176 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N+ + R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 177 LHAVGNSIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 236 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 237 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 296 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ ++ + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 297 RVAIL-----MKKADENQIQLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 351 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 352 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAK 410 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 461 >gi|157690799|ref|YP_001485261.1| chromosomal replication initiation protein [Bacillus pumilus SAFR-032] gi|167016898|sp|A8F8Y4|DNAA_BACP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|157679557|gb|ABV60701.1| DNA-directed DNA replication initiator protein [Bacillus pumilus SAFR-032] Length = 446 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 155/473 (32%), Positives = 265/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ +++ ++ + +W + K HS+ + + ++ P F + W+++RYL Sbjct: 1 ME-NILDLWNKALQKIETKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I E ++ ++ + SPI + P+ + + Sbjct: 60 HLIADTIYELTGEELSIKFII--------PQNQDEVEAMPKSPIKKMSKEDPVDIPQNM- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 111 -------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + + + I+DIQR+V + +NI D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPRVITIKDIQRIVGQQFNIRLEDFKAKKRTKSVAYPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ MT S P+IG FG RDHTTV+HA K+ K++ D L++ V+ +K + Sbjct: 394 SREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLMVEDEQLQQHVKEIKEQLK 446 >gi|117617947|ref|YP_854527.1| chromosomal replication initiation protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166201857|sp|A0KEC3|DNAA_AERHH RecName: Full=Chromosomal replication initiator protein DnaA gi|117559354|gb|ABK36302.1| chromosomal replication initiator protein DnaA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 456 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 149/467 (31%), Positives = 256/467 (54%), Gaps = 17/467 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL + + Sbjct: 4 SLWQQCLNRLQDELPSAEFSMWIRPLQA-ELSDNTLTLYAPNRFVLDWVRDKYLIRVNGI 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + G + P A +P+ + + N KS + P S Sbjct: 63 INELCG-VDGPTLRFDIGNRPHPVAVARAPA--RGADPVNNSQKSWESKAEAKPEPNHKS 119 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 + + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ Sbjct: 120 NTNVNYTFENFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAV 174 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA +R+ + +V+Y+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 GNAIKERKQDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 234 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +I Sbjct: 235 SQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAI 294 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + ++ ++++ +EV +A+ + ++ REL+GA N+++ +F + + Sbjct: 295 L-----MRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVR 349 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 350 EALRDLLALQ-EKLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTN 408 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 HSLPEIGDAFGGRDHTTVLHACRKIEQLKEESHDIKEDYSNLIRTLS 455 >gi|228994208|ref|ZP_04154108.1| Chromosomal replication initiator protein dnaA [Bacillus pseudomycoides DSM 12442] gi|228995397|ref|ZP_04155069.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock3-17] gi|229003011|ref|ZP_04160870.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock1-4] gi|228758239|gb|EEM07425.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock1-4] gi|228764350|gb|EEM13225.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides Rock3-17] gi|228765660|gb|EEM14314.1| Chromosomal replication initiator protein dnaA [Bacillus pseudomycoides DSM 12442] Length = 446 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 264/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + K H++ +I+ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTKAHALKKDILTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ ++ + I I+ L + Sbjct: 60 ELISETLYDLTGAKLEIRFII--------PQSQTEEEIDYPPAKKKRINDESNHLPQ--- 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 109 -----SMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V + + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVFQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEINHILK 446 >gi|311070648|ref|YP_003975571.1| chromosomal replication initiation protein [Bacillus atrophaeus 1942] gi|310871165|gb|ADP34640.1| chromosomal replication initiation protein [Bacillus atrophaeus 1942] Length = 446 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 154/473 (32%), Positives = 262/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ +++ ++ + +W + K H++ + + ++ P F + W+++RYL Sbjct: 1 ME-NILDLWNQALVQIEKKLSKPSFETWMKSTKAHALQGDTLTITAPNEFARDWLESRYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I E ++ ++ + PI + P + Sbjct: 60 HLIADTIYELTGEELSIKFVI--------PQNQDEEDFMPKPPIKKVAKEEPSDFPQNM- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 111 -------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + I++IQR+V + +NI D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPKVITIKEIQRIVGQQFNIKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ MT S P+IG FG RDHTTV+HA K+ KM+ D L++ V+ +K + Sbjct: 394 SREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKMMLDDEQLQQHVKEIKEQLK 446 >gi|190890027|ref|YP_001976569.1| chromosomal replication initiator protein [Rhizobium etli CIAT 652] gi|190695306|gb|ACE89391.1| chromosomal replication initiator protein [Rhizobium etli CIAT 652] Length = 516 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 308/519 (59%), Positives = 376/519 (72%), Gaps = 20/519 (3%) Query: 1 MQLREVAACIQENDVEIAE--KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASW 58 MQ+ + A +N + + +++ + E+ +F VS+RLK QVGPDVYASW Sbjct: 1 MQMNTMTAGGHDNGDAAPQAFGSIRLEMGEAKAEMKQSILFERVSARLKAQVGPDVYASW 60 Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS 118 F RLK HSV ++V LSVPT FLK+WI NRYL+ IT LFQ E I +EILVR+ Sbjct: 61 FARLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITGLFQAEDPEILKIEILVRTATRSG 120 Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTI---------------SPVFGSPLDSRFV 163 ++ +P S + +P+FGSPLDSRF Sbjct: 121 MKAADEVVQPEPAAPAQMRRPASAQPASQAVQQAVSAVAAARPASFGAPLFGSPLDSRFT 180 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TF+EGSSNRVAL AA++IAE G VR NPLF+H++VGLGKTHLLQAIANA+++ Sbjct: 181 FDTFVEGSSNRVALAAAKTIAEA---GSGAVRFNPLFVHSTVGLGKTHLLQAIANAAVQN 237 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHL 283 LRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDLL+IDDMQFLQGK+IQHEFCHL Sbjct: 238 PRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHL 297 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 LN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ L DYEMR ILK RLA + Sbjct: 298 LNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYEMRLEILKRRLAAA 357 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT 403 ++EDP L I ++L HVAR +T SGREL+GAFNQL+FR SF P L+ E DELL+HLV + Sbjct: 358 RQEDPSLEIPADLLQHVARNITASGRELEGAFNQLIFRRSFEPNLSIERVDELLAHLVGS 417 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 GE +++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK +TPRSFPEIGRR Sbjct: 418 GEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRR 477 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTVLHAVRK+E+++ D L E+ELLKRLI+E Sbjct: 478 FGGRDHTTVLHAVRKIEELISGDTKLSHEIELLKRLINE 516 >gi|54307245|ref|YP_128265.1| chromosomal replication initiation protein [Photobacterium profundum SS9] gi|61212603|sp|Q6LW50|DNAA_PHOPR RecName: Full=Chromosomal replication initiator protein DnaA gi|46911665|emb|CAG18463.1| Putative DnaA chromosomal replication initiator protein [Photobacterium profundum SS9] Length = 474 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 158/484 (32%), Positives = 263/484 (54%), Gaps = 29/484 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I Sbjct: 2 SSSLWLQCLQRLQEELPATEFSMWVRPLQA-ELKDNTLTLFAPNRFVLDWVRDKYLNNIN 60 Query: 95 KLFQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-----SPIILG 146 +L E I E+ R V +PS + A + L+P ++ +P Sbjct: 61 RLLNEFCGTDIPILRFEVGSRQVVVPSSQIIAPAAPAVTLAPRPLPATRILQDDAPSRSW 120 Query: 147 KQTISPV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + SPV + S ++ + F+ F+EG SN++ L A + +++ Y NPL Sbjct: 121 EPAPSPVQPESKSGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAY-----NPL 175 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 F++ GLGKTHLL A+ NA R+PN RVVY+ +E F+ A+++N K R+ Sbjct: 176 FLYGGTGLGKTHLLHAVGNAIADRKPNARVVYMHSERFVQDMVKALQNNAIEEFKRYYRS 235 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR Sbjct: 236 VDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGW 295 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + + E R +IL + + E+ + + +EV +A+ + ++ REL+GA N++ Sbjct: 296 GLTVAIEPPELETRVAIL-----MKKAENHNIRLPDEVAFFIAKRLRSNVRELEGALNRV 350 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + +F +T + E L L+ K + I++IQ+ VA++Y I +D+LS RR R+ Sbjct: 351 IANANFTGRAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMSDMLSKRRSRS 409 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L Sbjct: 410 VARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIVQLREESHDIKEDYSNLI 469 Query: 498 RLIS 501 R +S Sbjct: 470 RTLS 473 >gi|167621942|ref|YP_001672236.1| chromosomal replication initiation protein [Shewanella halifaxensis HAW-EB4] gi|189083278|sp|B0TLA4|DNAA_SHEHH RecName: Full=Chromosomal replication initiator protein DnaA gi|167351964|gb|ABZ74577.1| chromosomal replication initiator protein DnaA [Shewanella halifaxensis HAW-EB4] Length = 461 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 154/472 (32%), Positives = 257/472 (54%), Gaps = 22/472 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + + + + P F+ W++++YL I + Sbjct: 4 SLWQQCIARLQDELSAQQFSMWIRPLQV-EMEGDTLVIYAPNRFVLDWVRDKYLNIINQF 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT--IS 151 F E+ +I R A P V+ TA +I P++ + K + Sbjct: 63 FTEQMGSDAPNLRFDIGSRPSARPIVQATA---AIRTSRPVSREVVKPSFNTPHADPIAN 119 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTH Sbjct: 120 ANHRSNINPTYQFDNFVEGKSNQLGKAAAMQVAENPGGAY-----NPLFLYGGTGLGKTH 174 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 175 LLHAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFF 234 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+LL+ Q++ +D+ P E++ ++ R++SR G++V + + E Sbjct: 235 ANKDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELE 294 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 295 TRVAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPIT 349 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LS Sbjct: 350 IDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALS 408 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 409 KELTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 460 >gi|220933194|ref|YP_002512093.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. HL-EbGR7] gi|219994504|gb|ACL71106.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. HL-EbGR7] Length = 455 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 250/471 (53%), Gaps = 19/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + ++ +RL++++ +W + L+ + + L P F+ W+++ + + Sbjct: 1 MAVSPLWQQCVARLESELSEQQLNTWIRPLQAVE-DDHALRLLAPNRFVMDWVRDHFFQR 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + V + V S P+ + +P+ ++ P+ S Sbjct: 60 IDAMVTD-LGTQRRVMLEVGSGRPPA----PTVEPRPSPAPVTAAVNVQPVSHRPAASSA 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F + L+ F F F+EG SN++A A+ +A Y NPLF++ VGLGKTHL Sbjct: 115 QFTNNLNPNFTFDNFVEGKSNQLARAASLQVAANVGLAY-----NPLFLYGGVGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI NA + +P +VVYL +E F+ A++ N K R++D LLIDD+QF Sbjct: 170 MHAIGNAILAHRPGAKVVYLHSERFVADMIKALQHNAIDEFKGYYRSVDALLIDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+LL+S +QV+ DR P E++ L+ R++SR G++V + + E Sbjct: 230 GKERSQEEFFHTFNALLESQQQVILTCDRYPKEVDGLEERLKSRFGWGLTVAIEPPELET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E + EV +A+ + ++ REL+GA ++V F +T Sbjct: 290 RVAILQR-----KAEQANTELPSEVAFFMAKRIRSNIRELEGALRRVVANAHFTGRPITL 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + A E L L+ K + I++IQ+ VA++Y I +DL S RR R++ RPRQ+AM L+K Sbjct: 345 DFAKEALRDLLALQ-DKLITIDNIQKTVAEYYKIRVSDLHSTRRSRSITRPRQLAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RKV ++ ETD + ++ L R +S Sbjct: 404 ELTNHSLPEIGDAFGGRDHTTVLHACRKVVELRETDPRINEDYVNLLRTLS 454 >gi|326423789|ref|NP_759961.2| chromosomal replication initiator protein DnaA [Vibrio vulnificus CMCP6] gi|31340045|sp|Q8DDI9|DNAA_VIBVU RecName: Full=Chromosomal replication initiator protein DnaA gi|319999154|gb|AAO09488.2| chromosomal replication initiator protein DnaA [Vibrio vulnificus CMCP6] Length = 468 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 156/478 (32%), Positives = 258/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCMQRLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L QE E+ R VA P T + + S + + Sbjct: 61 RLLQEYCGHDIPNLRFEVGSRPVAAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F+ F+EG SN++ L AA+ +A+ Y NPLF++ Sbjct: 121 AQAIADINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|127510936|ref|YP_001092133.1| chromosomal replication initiation protein [Shewanella loihica PV-4] gi|166215330|sp|A3Q8S6|DNAA_SHELP RecName: Full=Chromosomal replication initiator protein DnaA gi|126636231|gb|ABO21874.1| chromosomal replication initiator protein DnaA [Shewanella loihica PV-4] Length = 459 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 256/470 (54%), Gaps = 20/470 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + L P F+ W++++YL TI + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMDGETLVLYAPNRFVLDWVRDKYLNTINQF 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E+ +I R + P+ ++ + ++P + SK + + Sbjct: 63 FTEQMGSDAPKLRFDIGSRPASKPAAPAASTK---SPVAPAAKSPSKPSFNSNEPAATAN 119 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++ AA ++E Y NPLF++ GLGKTHLL Sbjct: 120 HRSNMNPTYQFDNFVEGKSNQLGKAAALQVSENPGGAY-----NPLFLYGGTGLGKTHLL 174 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 175 HAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFAN 234 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ QV+ +DR P E++ ++ R++SR G++V + + E R Sbjct: 235 KDRSQEEFFHTFNALLEGNHQVILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETR 294 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 VAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 349 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+AM LSK Sbjct: 350 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSKE 408 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 409 LTNQSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 458 >gi|283787598|ref|YP_003367463.1| chromosomal replication initiator protein [Citrobacter rodentium ICC168] gi|282951052|emb|CBG90730.1| chromosomal replication initiator protein [Citrobacter rodentium ICC168] Length = 468 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 256/476 (53%), Gaps = 23/476 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 ---FQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLSPI--NTNISKSPIILGK 147 F + E+ + V P A+ +T+ P S+ Sbjct: 63 LNNFCGADAPQLRFEVGTKPVTQTLKTPVNNNFAAPAQVTQAQPQRPEPTASRPGWDNVP 122 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GL Sbjct: 123 APAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGL 177 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 178 GKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 237 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEP 297 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 PELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTG 352 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+A Sbjct: 353 RAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMA 411 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 467 >gi|15640044|ref|NP_062596.1| chromosomal replication initiation protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147674057|ref|YP_001218400.1| chromosomal replication initiation protein [Vibrio cholerae O395] gi|153212955|ref|ZP_01948549.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 1587] gi|153802489|ref|ZP_01957075.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae MZO-3] gi|153819845|ref|ZP_01972512.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae NCTC 8457] gi|153830821|ref|ZP_01983488.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 623-39] gi|227080249|ref|YP_002808800.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae M66-2] gi|254225544|ref|ZP_04919153.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae V51] gi|254291127|ref|ZP_04961924.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae AM-19226] gi|254851577|ref|ZP_05240927.1| chromosomal replication initiation protein [Vibrio cholerae MO10] gi|297581954|ref|ZP_06943874.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae RC385] gi|298501197|ref|ZP_07010996.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MAK 757] gi|9654403|gb|AAF93190.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|124116181|gb|EAY35001.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 1587] gi|124121959|gb|EAY40702.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae MZO-3] gi|125621864|gb|EAZ50189.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae V51] gi|126509606|gb|EAZ72200.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae NCTC 8457] gi|146315940|gb|ABQ20479.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O395] gi|148873705|gb|EDL71840.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae 623-39] gi|150422972|gb|EDN14922.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae AM-19226] gi|227008137|gb|ACP04349.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae M66-2] gi|227011985|gb|ACP08195.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae O395] gi|254847282|gb|EET25696.1| chromosomal replication initiation protein [Vibrio cholerae MO10] gi|297533821|gb|EFH72662.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae RC385] gi|297540069|gb|EFH76131.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MAK 757] Length = 472 Score = 511 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 153/479 (31%), Positives = 256/479 (53%), Gaps = 22/479 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL Sbjct: 5 IVSSSLWLQCLQRLQEELPAAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNN 63 Query: 93 ITKLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII----- 144 I +L E E+ R V P ++ + S +++ I Sbjct: 64 INRLLMEFSGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWD 123 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 124 DDSAAADITHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGG 178 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LL Sbjct: 179 TGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 238 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 239 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVA 298 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ + Sbjct: 299 IEPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANAN 353 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 354 FTGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPR 412 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 413 QLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 471 >gi|295702243|ref|YP_003595318.1| chromosomal replication initiator protein DnaA [Bacillus megaterium DSM 319] gi|294799902|gb|ADF36968.1| chromosomal replication initiator protein DnaA [Bacillus megaterium DSM 319] Length = 447 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 268/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ +++ ++ + +W + K H++ + + ++ P +F + W+++RY Sbjct: 1 ME-NIHDLWNRALDQIEKKLSKPSFETWLKSTKAHALQGDTLIITAPNDFARDWLESRYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + + E+ V+ + P+ + K + ++ P Sbjct: 60 NLIAETLYDLTGE----ELDVKFIIPPNQAEEEFDIQAPKKKVNKDDGAEFPQ------- 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+S++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 109 -----SMLNSKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVYL++E F F ++IRDN A+ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVLDHNPAAKVVYLSSEKFTNEFINSIRDNKAVEFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKADGLVIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + + + I+DIQ++V + +NI +D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPRVITIQDIQQIVGQEFNIKLDDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+++TD L+K+++ + + Sbjct: 394 SRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKLVQTDTDLQKQIKEISESLK 446 >gi|194016318|ref|ZP_03054932.1| chromosomal replication initiator protein DnaA [Bacillus pumilus ATCC 7061] gi|194011791|gb|EDW21359.1| chromosomal replication initiator protein DnaA [Bacillus pumilus ATCC 7061] Length = 446 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 155/473 (32%), Positives = 265/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ +++ ++ + +W + K HS+ + + ++ P F + W+++RYL Sbjct: 1 ME-NILDLWNKALQKIETKLSKPSFETWMKSTKAHSLQGDTLTITAPNEFARDWLESRYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I E ++ ++ + SPI + P+ + + Sbjct: 60 HLIADTIYELTGEELSIKFII--------PQNQDEVEAMPKSPIKKMSKEDPVDIPQNM- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 111 -------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIDHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + + + I+DIQR+V + +NI D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPRIITIKDIQRIVGQQFNIRLEDFKAKKRTKSVAYPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ MT S P+IG FG RDHTTV+HA K+ K++ D L++ V+ +K + Sbjct: 394 SREMTDSSLPKIGEEFGGRDHTTVIHAHEKISKLIVEDEQLQQHVKEIKEQLK 446 >gi|299541765|ref|ZP_07052088.1| chromosomal replication initiation protein [Lysinibacillus fusiformis ZC1] gi|298725503|gb|EFI66144.1| chromosomal replication initiation protein [Lysinibacillus fusiformis ZC1] Length = 449 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 155/476 (32%), Positives = 266/476 (55%), Gaps = 31/476 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNR 88 +E + E ++ V ++++ ++ + +W + K S + V ++ P +F + W++N Sbjct: 1 ME-HLEELWNNVLAQVEQKISKPSFETWLKSTKLLSYNGSGSTVTIAAPNSFARDWLENH 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y+ IT + E ++ +V +K S +PI I Sbjct: 60 YIHLITGILTELTGEDLLIKFVV--------QKNQDSDDFDLPAPI--------IQAKNN 103 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + L+ ++ F TF+ GS NR A A+ ++AE + Y NP FI+ VGLG Sbjct: 104 EHHDISPGMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPFFIYGGVGLG 158 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + ++ PN +VVYL++E F F ++IRDN AL+ ++ RN+D+LLIDD+ Sbjct: 159 KTHLMHAIGHYVLEHNPNAKVVYLSSEKFTNEFINSIRDNKALDFRNKYRNVDVLLIDDI 218 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 219 QFLAGKESTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPP 278 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 D E R +IL+ + + L + EV++++A + ++ REL+GA ++V S Sbjct: 279 DLETRIAILRK-----KAKADGLEVPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNK 333 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +TA +A E L ++ + + + I DIQ V +H++I D + +R + + PRQ+AM Sbjct: 334 DITATLAAEALKDIIPNSKPRTVTILDIQNAVGEHFSIRLEDFAAKKRTKLIAFPRQIAM 393 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YLS+ +T S P+IG FG RDHTTV+HA K+ ML+ D+ L+++V+ ++ ++ + Sbjct: 394 YLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISSMLKNDVQLQQDVKQIRSMLGK 449 >gi|229508297|ref|ZP_04397801.1| chromosomal replication initiator protein dnaA [Vibrio cholerae BX 330286] gi|229508864|ref|ZP_04398355.1| chromosomal replication initiator protein dnaA [Vibrio cholerae B33] gi|229515949|ref|ZP_04405406.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TMA 21] gi|229517135|ref|ZP_04406581.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC9] gi|229520184|ref|ZP_04409611.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TM 11079-80] gi|229530202|ref|ZP_04419591.1| chromosomal replication initiator protein dnaA [Vibrio cholerae 12129(1)] gi|229606571|ref|YP_002877219.1| chromosomal replication initiation protein [Vibrio cholerae MJ-1236] gi|258622958|ref|ZP_05717973.1| chromosomal replication initiation protein [Vibrio mimicus VM573] gi|258626082|ref|ZP_05720933.1| chromosomal replication initiation protein [Vibrio mimicus VM603] gi|31340536|sp|Q9KVX6|DNAA_VIBCH RecName: Full=Chromosomal replication initiator protein DnaA gi|229332335|gb|EEN97822.1| chromosomal replication initiator protein dnaA [Vibrio cholerae 12129(1)] gi|229342778|gb|EEO07769.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TM 11079-80] gi|229346198|gb|EEO11170.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC9] gi|229347049|gb|EEO12011.1| chromosomal replication initiator protein dnaA [Vibrio cholerae TMA 21] gi|229354139|gb|EEO19071.1| chromosomal replication initiator protein dnaA [Vibrio cholerae B33] gi|229354570|gb|EEO19492.1| chromosomal replication initiator protein dnaA [Vibrio cholerae BX 330286] gi|229369226|gb|ACQ59649.1| chromosomal replication initiator protein dnaA [Vibrio cholerae MJ-1236] gi|258581608|gb|EEW06506.1| chromosomal replication initiation protein [Vibrio mimicus VM603] gi|258584741|gb|EEW09475.1| chromosomal replication initiation protein [Vibrio mimicus VM573] Length = 467 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 153/477 (32%), Positives = 255/477 (53%), Gaps = 22/477 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I Sbjct: 2 SSSLWLQCLQRLQEELPAAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII-----LG 146 +L E E+ R V P ++ + S +++ I Sbjct: 61 RLLMEFSGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDD 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ G Sbjct: 121 SAAADITHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTG 175 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLID Sbjct: 176 LGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLID 235 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIE 295 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 PPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFT 350 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+ Sbjct: 351 GRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQL 409 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 466 >gi|152973855|ref|YP_001373372.1| chromosomal replication initiation protein [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189044630|sp|A7GJR9|DNAA_BACCN RecName: Full=Chromosomal replication initiator protein DnaA gi|152022607|gb|ABS20377.1| chromosomal replication initiator protein DnaA [Bacillus cytotoxicus NVH 391-98] Length = 446 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 260/473 (54%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ + L+ +V Y +W + K H++ + + + P F + W+++ Y Sbjct: 1 ME-NIADLWNSALTELEKKVSKPSYETWLKSTKAHALKKDTLTIIAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + + Sbjct: 60 ELISETIYDITGAKLNIRFII----------------PQSQTEEEVDYPPAKAKKMNDES 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMIYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ ++L+TD L+K++E + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISRLLKTDTQLQKQIEEINDILK 446 >gi|157373147|ref|YP_001471747.1| chromosomal replication initiation protein [Shewanella sediminis HAW-EB3] gi|189083280|sp|A8FP46|DNAA_SHESH RecName: Full=Chromosomal replication initiator protein DnaA gi|157315521|gb|ABV34619.1| chromosomal replication initiator protein DnaA [Shewanella sediminis HAW-EB3] Length = 462 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 251/470 (53%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-QMDGDTLVLYAPNRFVLDWVRDKYINIINQF 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E+ +I R A V+ TA+ + + + ++ Sbjct: 63 FTEQMGSDAPKLRFDIGSRPSAPRPVQATAAVERPKFEQNTKPAKTSFNVNSPEPAMAAN 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL Sbjct: 123 HRSNINRTYQFENFVEGKSNQLGKAAAMQVAENPGGAY-----NPLFLYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF Sbjct: 178 HAVGNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ Q++ +D+ P E++ ++ R++SR G++V + + E R Sbjct: 238 KDRSQEEFFHTFNALLEGNHQIILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 298 VAIL-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK Sbjct: 353 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+ ++ E K++ L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDTKEDYANLIRTLS 461 >gi|37678195|ref|NP_932804.1| chromosomal replication initiation protein [Vibrio vulnificus YJ016] gi|61212682|sp|Q7MQJ7|DNAA_VIBVY RecName: Full=Chromosomal replication initiator protein DnaA gi|37196934|dbj|BAC92775.1| chromosomal DNA replication initiator DnaA [Vibrio vulnificus YJ016] Length = 468 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 155/478 (32%), Positives = 258/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCMQRLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L QE E+ R +A P T + + S + + Sbjct: 61 RLLQEYCGHDIPNLRFEVGSRPMAAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F+ F+EG SN++ L AA+ +A+ Y NPLF++ Sbjct: 121 AQAIADINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVADNPGGAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|182416749|ref|ZP_02948146.1| chromosomal replication initiator protein DnaA [Clostridium butyricum 5521] gi|237669665|ref|ZP_04529643.1| chromosomal replication initiator protein DnaA [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379406|gb|EDT76901.1| chromosomal replication initiator protein DnaA [Clostridium butyricum 5521] gi|237654899|gb|EEP52461.1| chromosomal replication initiator protein DnaA [Clostridium butyricum E4 str. BoNT E BL5262] Length = 450 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 271/474 (57%), Gaps = 27/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++I+ +K+++ + +W + + S+ + + +SVP +F + + RY Sbjct: 1 MDADLKNIWAKTLETIKSELSEVSFNTWIKSCEPISISSDTITISVPNSFTQDILDKRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + S++ +E ++ S A + +S + S + + Sbjct: 61 DLVANSIEVVCSKLYKIEFVIASEASEKEDLKETSSNSASKSIV---------------V 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F++F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 NDEMSSTLNPKYTFNSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P+ +VVY+++E F +AI+D+ + ++ RN+D+LLIDD+QF Sbjct: 161 HLMHAIGHYILDNNPSAKVVYVSSEKFTNELINAIKDDKNEDFRNKYRNVDVLLIDDIQF 220 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + + D+ Sbjct: 221 IAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDF 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LN+ EV+ ++A + ++ REL+GA +++ S + Sbjct: 281 ETRMAILKK-----KADVENLNVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNRDV 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A E L +++ + K + I+ IQ +V+ ++N+ DL S RR R V PRQ+AMYL Sbjct: 336 TVDLATEALKDIISKKQGKHITIDLIQDVVSSYFNLRIEDLKSQRRTRNVAHPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ + L+TD +L+ V + + +++ Sbjct: 396 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISENLKTDDSLQHTVNDITKKLTQ 449 >gi|90413732|ref|ZP_01221720.1| chromosomal replication initiation protein [Photobacterium profundum 3TCK] gi|90325201|gb|EAS41698.1| chromosomal replication initiation protein [Photobacterium profundum 3TCK] Length = 474 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 157/484 (32%), Positives = 261/484 (53%), Gaps = 29/484 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I Sbjct: 2 SSSLWLQCLQRLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNIN 60 Query: 95 KLFQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-----SPIILG 146 +L E I E+ R V +P + A + L + +K +P Sbjct: 61 RLLNEFCGTDIPILRFEVGSRQVVVPPSQNIAPAAPAVTLVRKPSPATKILQDDAPSRSW 120 Query: 147 KQTISPV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + SPV + S ++ + F+ F+EG SN++ L A + +++ Y NPL Sbjct: 121 EPAPSPVQPESKSGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAY-----NPL 175 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 F++ GLGKTHLL A+ NA R+PN RVVY+ +E F+ A+++N K R+ Sbjct: 176 FLYGGTGLGKTHLLHAVGNAIADRKPNARVVYMHSERFVQDMVKALQNNAIEEFKRYYRS 235 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR Sbjct: 236 VDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGW 295 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + + E R +IL + + E+ + + +EV +A+ + ++ REL+GA N++ Sbjct: 296 GLTVAIEPPELETRVAIL-----MKKAENHNIRLPDEVAFFIAKRLRSNVRELEGALNRV 350 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + +F +T + E L L+ K + I++IQ+ VA++Y I +D+LS RR R+ Sbjct: 351 IANANFTGRAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMSDMLSKRRSRS 409 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L Sbjct: 410 VARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIVQLREESHDIKEDYSNLI 469 Query: 498 RLIS 501 R +S Sbjct: 470 RTLS 473 >gi|126651995|ref|ZP_01724187.1| chromosomal replication initiation protein [Bacillus sp. B14905] gi|126591264|gb|EAZ85373.1| chromosomal replication initiation protein [Bacillus sp. B14905] Length = 449 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 153/476 (32%), Positives = 266/476 (55%), Gaps = 31/476 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNR 88 +E + E ++ V ++++ ++ + +W + K S + V ++ P +F + W++N Sbjct: 1 ME-HLEELWNNVLAQVEQKISKPSFETWLKSTKLLSYNGSGSTVTIAAPNSFARDWLENH 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y+ IT + E ++ +V +K S +PI I Sbjct: 60 YIHLITGILTELTGEDLLIKFVV--------QKNQDSDDFDLPAPI--------IQAKNN 103 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + L+ ++ F TF+ GS NR A A+ ++AE + Y NP FI+ VGLG Sbjct: 104 DHHDISPGMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPFFIYGGVGLG 158 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + ++ PN +VVYL++E F F ++IRDN AL+ ++ RN+D+LLIDD+ Sbjct: 159 KTHLMHAIGHYVLEHNPNAKVVYLSSEKFTNEFINSIRDNKALDFRNKYRNVDVLLIDDI 218 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 219 QFLAGKESTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPP 278 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 D E R +IL+ + + L + EV++++A + ++ REL+GA ++V S Sbjct: 279 DLETRIAILRK-----KAKADGLEVPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNK 333 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + A +A E L ++ + + + I DIQ V +H++I D ++ +R + + PRQ+AM Sbjct: 334 DINATLAAEALKDIIPNSKPRTVTILDIQNAVGEHFSIRLEDFVAKKRTKLIAFPRQIAM 393 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YLS+ +T S P+IG FG RDHTTV+HA K+ +L+ D+ L+++V+ ++ ++ + Sbjct: 394 YLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKISSLLKNDVQLQQDVKQIRSMLGK 449 >gi|294496876|ref|YP_003560576.1| chromosomal replication initiator protein DnaA [Bacillus megaterium QM B1551] gi|294346813|gb|ADE67142.1| chromosomal replication initiator protein DnaA [Bacillus megaterium QM B1551] Length = 447 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 267/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ +++ ++ + +W + K H++ + + ++ P +F + W+++RY Sbjct: 1 ME-NIHDLWDRALDQIEKKLSKPSFETWLKSTKAHALQGDTLIITAPNDFARDWLESRYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + + E+ V+ + P+ + K ++ P Sbjct: 60 NLIAETLYDLTGE----ELDVKFIIPPNQAEEEFDIQTPKKKVNKDEGAEFPQ------- 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+S++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 109 -----SMLNSKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVYL++E F F ++IRDN A+ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVLDHNPAAKVVYLSSEKFTNEFINSIRDNKAVEFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKADGLVIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + + + I+DIQ++V + +NI +D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKDIIPSSKPRVITIQDIQQIVGQEFNIKLDDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+++TD L+K+++ + + Sbjct: 394 SRELTDFSLPKIGEEFGGRDHTTVIHAHEKISKLVQTDTDLQKQIKEISESLK 446 >gi|229524913|ref|ZP_04414318.1| chromosomal replication initiator protein dnaA [Vibrio cholerae bv. albensis VL426] gi|229338494|gb|EEO03511.1| chromosomal replication initiator protein dnaA [Vibrio cholerae bv. albensis VL426] Length = 467 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 152/477 (31%), Positives = 255/477 (53%), Gaps = 22/477 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL I Sbjct: 2 SSSLWLQCLQRLQEELPAAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII-----LG 146 +L E E+ R + P ++ + S +++ I Sbjct: 61 RLLMEFSGNDVPNLRFEVGSRPLVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDD 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ G Sbjct: 121 SAAADITHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTG 175 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLID Sbjct: 176 LGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLID 235 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIE 295 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 PPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFT 350 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+ Sbjct: 351 GRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQL 409 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 AMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 466 >gi|327438162|dbj|BAK14527.1| ATPase [Solibacillus silvestris StLB046] Length = 447 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 155/474 (32%), Positives = 263/474 (55%), Gaps = 29/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + E+++ V ++ + ++ + +W + K + V +S P +F + W++ Y+ Sbjct: 1 ME-HLENLWNAVLAQAEQKISKPSFDTWLKSTKLLAHSGTKVTISAPNSFARDWLEQYYI 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT + E + +V +K ++ PI S I Sbjct: 60 HMITGILNELTGEDLVINFVV--------QKDQTADDFELPPPITQAKSSE-----HHDI 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P L+ ++ F TF+ GS NR A A+ ++AE + Y NP FI+ VGLGKT Sbjct: 107 TPGM---LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPFFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P VVYL++E F F ++IRDN ++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVKEHNPTANVVYLSSEKFTNEFINSIRDNKTIDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKESTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDIAPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +IL+ + + L+I EV++++A V T+ REL+GA ++V S + + Sbjct: 279 ETRIAILRK-----KAKADGLDIPNEVMLYIANQVDTNIRELEGALIRVVAYSSLVNMDV 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E+A E L ++ + + + I DIQ +HY+I D + RR +++ PRQVAMYL Sbjct: 334 SPELAAEALKDIMPNSKPRMISILDIQTATGEHYSIRLEDFKAKRRTKSIAYPRQVAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ +L+TD L+++++ ++ ++ + Sbjct: 394 SRELTDYSLPKIGEEFGGRDHTTVIHAHEKISSLLKTDQQLQQDIKQIRSMLGK 447 >gi|292490136|ref|YP_003533031.1| chromosomal replication initiator protein dnaA [Erwinia amylovora CFBP1430] gi|292901140|ref|YP_003540509.1| chromosomal replication initiator protein [Erwinia amylovora ATCC 49946] gi|291200988|emb|CBJ48127.1| chromosomal replication initiator protein [Erwinia amylovora ATCC 49946] gi|291555578|emb|CBA24173.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora CFBP1430] gi|312174329|emb|CBX82582.1| Chromosomal replication initiator protein dnaA [Erwinia amylovora ATCC BAA-2158] Length = 463 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 150/471 (31%), Positives = 259/471 (54%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNNINAL 62 Query: 97 ---FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F + + E+ + VA + +S + ++ P ++ + Sbjct: 63 LNNFCGANVPLLRFEVGSKPVAQTVSQPVMASAHASAPGVVSRPAPTRPSWDNAPALAEL 122 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|229015406|ref|ZP_04172412.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1273] gi|229026930|ref|ZP_04183253.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1272] gi|228734388|gb|EEL85059.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1272] gi|228745885|gb|EEL95881.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH1273] Length = 446 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 262/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKDLEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + L PI N + Sbjct: 60 ELISETLYDLTGAKLAIRFII---------PQSQAEEDIDLPPIKKNRV-------QDDS 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 THLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKGIIPNSIPRIISISDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K VE + ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKHVEEINDILK 446 >gi|226326920|ref|ZP_03802438.1| hypothetical protein PROPEN_00780 [Proteus penneri ATCC 35198] gi|225204757|gb|EEG87111.1| hypothetical protein PROPEN_00780 [Proteus penneri ATCC 35198] Length = 466 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 152/475 (32%), Positives = 258/475 (54%), Gaps = 23/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++ +Y+ I L Sbjct: 4 SLWQHCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVREKYINNINAL 62 Query: 97 FQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-- 153 + + + V S T S P +NT + S + P Sbjct: 63 LVDFCGSEVPSLRFEV-GNKPASGRTTESIPKAVVHPTVNTTPTHSQPVRPSWDNQPASQ 121 Query: 154 -----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 122 LPELNYRSNVNPKHKFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N+ ++R+ N +VVY+ +E F+ A+++N + K R++D LLIDD+ Sbjct: 177 KTHLLHAVGNSIMERKANAKVVYMHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDI 236 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 237 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ ++ + +EV +A+ + ++ REL+GA N+++ +F Sbjct: 297 ELETRVAIL-----MKKADENQIQLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 352 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 411 ALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 465 >gi|205371912|ref|ZP_03224732.1| chromosomal replication initiation protein [Bacillus coahuilensis m4-4] Length = 447 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 157/474 (33%), Positives = 268/474 (56%), Gaps = 30/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ ++ ++ + +W + K HS+ + + ++ P F + W++ RY Sbjct: 1 ME-NISDLWNKALETIEQKISKPSFDTWLKSTKAHSLKGDNLVITAPNEFARDWLEGRYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I ++ I G E+ ++ + + E P I + GK Sbjct: 60 QLIAEVIF----SITGEELTIKFIIPQNQE------------PEEFEIPLPSVKNGKDDD 103 Query: 151 SPVF-GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 F S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGK Sbjct: 104 HHDFQTSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGK 158 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + ++ P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+Q Sbjct: 159 THLMHAIGHYVLEHNPSAKVVYLSSEKFTNEFINSIRDNKAVDFRNRYRNVDVLLIDDIQ 218 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 FLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPD 278 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL+ + + L+I E ++++A + T+ REL+GA ++V S Sbjct: 279 LETRIAILRK-----KAKAEGLDIPNEAMLYIANQIDTNIRELEGALIRVVAYSSLINKD 333 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + A++A E L ++ + + + + I DIQR V +HYN+ D + +R +++ PRQ+AMY Sbjct: 334 INADLASEALKDIIPSSKPRVISISDIQRAVGEHYNVKLEDFKAKKRTKSIAFPRQIAMY 393 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG FG RDHTTV+HA K+ K+L++D L+ +V+ ++ + Sbjct: 394 LSRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLQSDSLLQSQVKEIQSTLQ 447 >gi|332971204|gb|EGK10167.1| DNA-directed DNA replication initiator protein DnaA [Desmospora sp. 8437] Length = 460 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 155/474 (32%), Positives = 253/474 (53%), Gaps = 28/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + + ++ R++ ++ + +W Q + + + ++ P F + W+++RY Sbjct: 11 VDTHIQELWAQALERIQGKLSKPSFETWLQATEAVDFRDDTLVVTAPNEFARDWLESRYA 70 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + QE + G++ + S P E+ A++ S Sbjct: 71 NLVRDTLQEVTGSVIGIQFITHSSIRPDGEEEAAASS-----------------EKIHFQ 113 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+SR+ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 114 DDPPKTMLNSRYTFDTFVIGSGNRFAHAASLAVAEAPAKSY-----NPLFIYGGVGLGKT 168 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI N + RVVYL++E F F ++IRDN A + ++ RN+D+LLIDD+QF Sbjct: 169 HLMHAIGNYVQSHSTHTRVVYLSSETFTNEFINSIRDNRADDFRNRYRNVDILLIDDIQF 228 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L +KQ+V ++DRPP + +L+ R+RSR + G+ + D Sbjct: 229 LAGKEQTQEEFFHTFNALHGESKQIVISSDRPPKAIPTLEDRLRSRFEWGLITDIQPPDL 288 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + E EV+ +A V T+ REL+GA ++V + + Sbjct: 289 ETRIAILRKKAIADNLEINN----SEVMAFIADRVETNIRELEGALIRVVAYSALTNQPV 344 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L +++ + + + I+DIQ+ V +Y + DL +R + V PRQ+AMYL Sbjct: 345 TVELAAEALKDIISDSKPRVIGIQDIQQEVCAYYRLRMEDLKGKKRTKNVALPRQIAMYL 404 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IG FG RDHTTV+HA K+ + L D +L++ VE L+R I + Sbjct: 405 CRELTDSSLPKIGEEFGGRDHTTVIHAHEKITRTLSMDRSLQQAVEDLQRRIMK 458 >gi|297518857|ref|ZP_06937243.1| chromosomal replication initiation protein [Escherichia coli OP50] Length = 457 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 149/468 (31%), Positives = 247/468 (52%), Gaps = 22/468 (4%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 1 ARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGA 59 Query: 104 I---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFG 155 E+ + V S+ + +P P + Sbjct: 60 DAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYR 119 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A Sbjct: 120 SNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHA 174 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 VGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 234 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R + Sbjct: 235 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVA 294 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 IL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFV 349 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 350 REALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELT 408 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 NHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 456 >gi|163938014|ref|YP_001642898.1| chromosomal replication initiation protein [Bacillus weihenstephanensis KBAB4] gi|229014656|ref|ZP_04171770.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides DSM 2048] gi|229065149|ref|ZP_04200442.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH603] gi|229136315|ref|ZP_04265062.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST196] gi|229170193|ref|ZP_04297879.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH621] gi|226735778|sp|A9VM90|DNAA_BACWK RecName: Full=Chromosomal replication initiator protein DnaA gi|23193191|gb|AAN14420.1|AF319579_1 DnaA [Bacillus weihenstephanensis] gi|163860211|gb|ABY41270.1| chromosomal replication initiator protein DnaA [Bacillus weihenstephanensis KBAB4] gi|228613294|gb|EEK70433.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH621] gi|228647187|gb|EEL03275.1| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD-ST196] gi|228716178|gb|EEL67897.1| Chromosomal replication initiator protein dnaA [Bacillus cereus AH603] gi|228746667|gb|EEL96556.1| Chromosomal replication initiator protein dnaA [Bacillus mycoides DSM 2048] Length = 446 Score = 508 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 153/473 (32%), Positives = 261/473 (55%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y Sbjct: 1 ME-NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I++ + + ++ + + ++ Sbjct: 60 ELISETLYDLTGAKLAIRFII----------------PQSQAEEDIDLPSVKQKHAHDES 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NHLPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDM 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L +++ + + I DIQ+ V Y + D + +R ++V PRQ+AMYL Sbjct: 334 NADLAAEALKNIIPNSIPRIISISDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K+L+TD L+K VE +K ++ Sbjct: 394 SRELTDSSLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKHVEEVKDILK 446 >gi|311032256|ref|ZP_07710346.1| chromosomal replication initiation protein [Bacillus sp. m3-13] Length = 448 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 149/465 (32%), Positives = 259/465 (55%), Gaps = 27/465 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ ++++ ++ + +W + K HS+ + + ++ P F + W+++RY I Sbjct: 3 NISDLWVKALNQIEKKISKPSFETWLKSTKAHSLQGDNLVITAPNEFARDWLESRYSGLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + ++ ++ + A K P I + + Sbjct: 63 GETISDITGEELSIKFII-------PQNQADEEIEIKTPPAKVKKDDDMIEIPQNM---- 111 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 112 ----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 162 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ P +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 163 HAIGHYVIEHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 222 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 223 KEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 282 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 283 IAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 337 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + + + I DIQR V + YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 338 LAAEALKDIIPSSRPRVVTIHDIQRTVGEEYNVKLEDFKAKKRTKSIAFPRQIAMYLSRE 397 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +T S P+IG FG RDHTTV+HA K+ +++TD L+K+++ + Sbjct: 398 LTDYSLPKIGEEFGGRDHTTVIHAHEKISNLVKTDTNLQKQIQSI 442 >gi|149182290|ref|ZP_01860769.1| chromosomal replication initiation protein [Bacillus sp. SG-1] gi|148849982|gb|EDL64153.1| chromosomal replication initiation protein [Bacillus sp. SG-1] Length = 448 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 154/473 (32%), Positives = 270/473 (57%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ S ++ ++ + +W + K HS+ + + ++ P F + W++ RY Sbjct: 1 ME-NIGDLWNKALSNIEKKISKPSFDTWLKSTKAHSIQGDTLVITAPNEFARDWLEGRYS 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I+ + E I G E++V+ + + E + ++ + + Sbjct: 60 QLISDVLLE----ITGEELIVKFIIPQNQEPEEFDIPVPPKKVVDNDDGQE--------- 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ +++F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 107 --FQQNMLNPKYMFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QF Sbjct: 160 HLMHAIGHYVLEHNPAAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQF 219 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 220 LAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I E ++++A + ++ REL+GA ++V S + Sbjct: 280 ETRIAILRK-----KAKAEGLDIPNEAMLYIANQIDSNIRELEGALIRVVAYSSLINKDI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + + K + I DIQR+V + +N+ D + +R +++ PRQ+AMYL Sbjct: 335 NADLAAEALKDIIPSSKPKVITIADIQRVVGEQFNVRMEDFKAKKRTKSIAFPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ MT S P+IG FG RDHTTV+HA K+ KML +D T + +++ ++ L+ Sbjct: 395 SREMTDFSLPKIGEEFGGRDHTTVIHAHEKISKMLGSDSTFQHQLKEIRDLLK 447 >gi|150014893|ref|YP_001307147.1| chromosomal replication initiation protein [Clostridium beijerinckii NCIMB 8052] gi|189044634|sp|A6LPB1|DNAA_CLOB8 RecName: Full=Chromosomal replication initiator protein DnaA gi|149901358|gb|ABR32191.1| chromosomal replication initiator protein DnaA [Clostridium beijerinckii NCIMB 8052] Length = 449 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 271/474 (57%), Gaps = 28/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++++ +K+++ + +W + + S+ N + +SVP +F + + RY Sbjct: 1 MDADLKNLWDKTLDIIKSELSEVSFNTWIKSCEPLSISSNTLKISVPNSFTQDILDKRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + S++ +E ++ S E +SS +K +N +S Sbjct: 61 DLVANSIKAVCSKLYTIEFIIMSEIYEKEEIKSSSNQKSKAIVVNDEMS----------- 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F++F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 110 -----STLNPKYTFNSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + PN +VVY+++E F +AI+D+ ++ RN+D+LLIDD+QF Sbjct: 160 HLMHAIGHYILDGNPNAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRNVDILLIDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + + D+ Sbjct: 220 IAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDF 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LN+ EV+ ++A + ++ REL+GA +++ S + Sbjct: 280 ETRMAILKK-----KADVENLNVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREV 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A E L +++ + K + I+ IQ +V+ ++N+ DL S RR R V PRQ+AMYL Sbjct: 335 TVDLATEALKDIISKKQGKHVTIDLIQDVVSSYFNLRVEDLKSQRRTRNVAYPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ + L+TD +L+ V + + +++ Sbjct: 395 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISENLKTDDSLQSTVNDITKKLTQ 448 >gi|119773155|ref|YP_925895.1| chromosomal replication initiation protein [Shewanella amazonensis SB2B] gi|166215327|sp|A1S1G9|DNAA_SHEAM RecName: Full=Chromosomal replication initiator protein DnaA gi|119765655|gb|ABL98225.1| chromosomal replication initiator protein DnaA [Shewanella amazonensis SB2B] Length = 457 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 151/467 (32%), Positives = 257/467 (55%), Gaps = 16/467 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL++++ ++ W + L+ + + + L P F+ W++++Y+ +I + Sbjct: 4 SLWQQCIGRLQDELSAQQFSMWIRPLQA-EMEGDTLVLYAPNRFVLDWVRDKYINSINQF 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F E+ ++ + PS + A +P+ K + S + + +S S Sbjct: 63 FTEQLGDNAP-KLRFDIGSRPSAKPQAPAPAAVKAAAPQPKPGNSFVSQPEPAVS-NHRS 120 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 ++ + F F+EG SN++ AA +AE Y NPLF++ GLGKTHLL A+ Sbjct: 121 NINPTYQFDNFVEGKSNQLGKAAALQVAENPGGAY-----NPLFLYGGTGLGKTHLLHAV 175 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF K Sbjct: 176 GNGIIKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDR 235 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ Q++ +DR P E++ ++ R++SR G++V + + E R +I Sbjct: 236 SQEEFFHTFNALLEGNHQIILTSDRYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAI 295 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + ++ +N+ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 296 L-----MRKAQESGINLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVR 350 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+AM LSK +T Sbjct: 351 EALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALSKELTN 409 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 410 QSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYANLIRTLS 456 >gi|259910295|ref|YP_002650651.1| Chromosomal replication initiator protein [Erwinia pyrifoliae Ep1/96] gi|224965917|emb|CAX57450.1| Chromosomal replication initiator protein [Erwinia pyrifoliae Ep1/96] Length = 463 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 150/471 (31%), Positives = 259/471 (54%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNNINSL 62 Query: 97 ---FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F + + E+ + VA + +S + ++ P ++ + Sbjct: 63 LNNFCGANVPLLRFEVGSKPVAQTVSQPVMASAHASAPGVMSRPAPMRPSWDNVPALAEL 122 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|310765874|gb|ADP10824.1| Chromosomal replication initiator protein [Erwinia sp. Ejp617] Length = 463 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 151/471 (32%), Positives = 259/471 (54%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNNINSL 62 Query: 97 ---FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F + + E+ + VA + +S + I+ P ++ + Sbjct: 63 LNNFCGANVPLLRFEVGSKPVAQTVSQPVMASAHASAPGVISRPAPMRPSWDNVPALAEL 122 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 123 SYRSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 178 LHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 238 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 298 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K Sbjct: 353 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 412 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 462 >gi|23097456|ref|NP_690922.1| chromosomal replication initiation protein [Oceanobacillus iheyensis HTE831] gi|38257607|sp|Q8EU88|DNAA_OCEIH RecName: Full=Chromosomal replication initiator protein DnaA gi|22775679|dbj|BAC11957.1| chromosomal replication initiation protein [Oceanobacillus iheyensis HTE831] Length = 447 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 160/473 (33%), Positives = 268/473 (56%), Gaps = 30/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N E +++ +++ ++ + +W + K ++ + + +S P F + W++N+Y Sbjct: 1 ME-NIEELWSATLKKIEEKLSKPSFDTWLKNTKAEALEKDTLIISAPNEFARDWLENQYT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I+++ E + G E+ + + S+E+ + K +T+ SP Sbjct: 60 NLISQMLLE----VTGSELNTKFIIPDSLEEIEEQKPMPKPK-QSTDTGDSP-------- 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+S++ F TF+ G+ NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 107 ----KSMLNSKYTFDTFVIGAGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 157 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + PN +VVYLT+E F F +AI DN + + ++ RNID+LLIDD+QF Sbjct: 158 HLMHAIGHYVRDHNPNAKVVYLTSEKFTNEFINAIMDNKSNHFRNKYRNIDVLLIDDIQF 217 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L +KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 218 IAGKESTQEEFFHTFNALHGESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 277 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + L+I EV++++A + T+ REL+GA ++V S + Sbjct: 278 ETRIAILNK-----KAKAEGLDIPNEVMLYIANQINTNIRELEGALIRVVAYSSLVNQDI 332 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A +A + L ++ + + K++ I IQ +VA+ Y+I D + +R +++ PRQ+AMYL Sbjct: 333 DASLAADALKDIIPSSKPKEITIPAIQEIVAERYHIRLEDFAAKKRTKSIAFPRQIAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ KMLE D L +++E LK + Sbjct: 393 SRELTDASLPKIGEEFGGRDHTTVIHAHEKISKMLEQDTELDRDIEELKEKLK 445 >gi|255527586|ref|ZP_05394450.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] gi|296186784|ref|ZP_06855185.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] gi|255508719|gb|EET85095.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] gi|296048498|gb|EFG87931.1| chromosomal replication initiator protein DnaA [Clostridium carboxidivorans P7] Length = 450 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 159/474 (33%), Positives = 272/474 (57%), Gaps = 27/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + I+ + +K ++ + +W + + S+ NI+HLSVP +F + + RY Sbjct: 1 MNAHLKEIWEKTLNIIKGELTEVSFNTWIKSIIPLSMDDNILHLSVPNDFTRGILNTRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ VE + S E S TKL ++I + Sbjct: 61 DLIINALKLITSKKYNVEFSIASE-----EVQTSEEPKTKLKDNRSHI----------NV 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 NDEMSTMLNPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P+ +VVY+++E F ++I+D+ ++ ++ RNID+LLIDD+QF Sbjct: 161 HLMHAIGHYILENNPSSKVVYVSSEKFTNELINSIKDDKNVDFRNKYRNIDVLLIDDIQF 220 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 221 IAGKERTQEEFFHTFNALHDATKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LNI EV++++A + ++ REL+GA ++V S + Sbjct: 281 ETRMAILKK-----KADVENLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ ++K++ I+ IQ +VA +YN+ +D S RR R V PRQ+AMYL Sbjct: 336 SVDLAAEALKDIISSKQSKQVTIDLIQDVVANYYNLKVDDFKSARRTRNVAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ L+ D +L+ V L + I++ Sbjct: 396 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISGNLKVDESLQNAVNDLTKRINQ 449 >gi|283480419|emb|CAY76335.1| Chromosomal replication initiator protein dnaA [Erwinia pyrifoliae DSM 12163] Length = 475 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 150/471 (31%), Positives = 259/471 (54%), Gaps = 18/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 16 TLWQQCLARLQDELPATEFSMWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNNINSL 74 Query: 97 ---FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F + + E+ + VA + +S + ++ P ++ + Sbjct: 75 LNNFCGANVPLLRFEVGSKPVAQTVSQPVMASAHASAPGVMSRPAPMRPSWDNVPALAEL 134 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S +++R F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHL Sbjct: 135 SYRSNVNTRHNFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHL 189 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 190 LHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA 249 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 250 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELET 309 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 310 RVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 364 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K Sbjct: 365 DFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAK 423 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 424 ELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 474 >gi|149912068|ref|ZP_01900659.1| chromosomal replication initiation protein [Moritella sp. PE36] gi|149804864|gb|EDM64901.1| chromosomal replication initiation protein [Moritella sp. PE36] Length = 460 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 254/470 (54%), Gaps = 19/470 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ SRL+N++ ++ W + LK + + + L P F+ W++++YL +IT L Sbjct: 4 SLWQQCLSRLQNELSATEFSMWLRPLKA-ELTDSTLTLYAPNRFVLDWVRDKYLNSITAL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E I +I + + K+ + TI+ Sbjct: 63 FDEFCGADAPILRFDIGGKPTTITQTTTKIDRVVAAKVMRFPQTDPWESSSPQQPTIN-- 120 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++A AAQ +A Y NPLF++ GLGKTHLL Sbjct: 121 HRSNVNLTYTFENFVEGKSNQLARAAAQQVASNPGGAY-----NPLFLYGGTGLGKTHLL 175 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N ++PN +V+Y+ +E F+ A+++N K+ R++D LLIDD+QF Sbjct: 176 HAVGNGIKAQKPNAKVIYMHSERFVQDMVKALQNNAIEAFKNYYRSVDALLIDDIQFFAK 235 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E++ ++ R++SR G+++ + + E R Sbjct: 236 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETR 295 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + + +++ +EV +A+ + ++ REL+GA N+++ +F + + Sbjct: 296 VAIL-----MRKAVESNIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINID 350 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQVAM L+K Sbjct: 351 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADLLSKRRSRSVARPRQVAMALAKE 409 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+ ++ E + +K++ L R +S Sbjct: 410 LTNHSLPEIGDAFGGRDHTTVLHACRKIVQLKEENHDIKEDYSNLIRTLS 459 >gi|222084650|ref|YP_002543179.1| chromosomal replication initiator protein DnaA [Agrobacterium radiobacter K84] gi|221722098|gb|ACM25254.1| chromosomal replication initiator protein DnaA [Agrobacterium radiobacter K84] Length = 516 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 311/519 (59%), Positives = 378/519 (72%), Gaps = 20/519 (3%) Query: 1 MQLR-EVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWF 59 MQ+ ++ D + E+ +F VS+RLK QVGPDVYASWF Sbjct: 1 MQINTRTTGALENGDNAPQAFSAVCLEAGEKGEMQHNVLFERVSARLKAQVGPDVYASWF 60 Query: 60 QRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV----A 115 RLK HSV ++V L+VPT FLK+WI NRYL+ IT LFQ E + + VEILVR+ A Sbjct: 61 ARLKLHSVSKSVVRLTVPTTFLKSWINNRYLDLITSLFQAEDAEVLKVEILVRTATRHAA 120 Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTI------------SPVFGSPLDSRFV 163 P ++ P T ++PI ++ + + SP+FGSPLDSRF Sbjct: 121 KPCADEQVVVPDSTAVAPIRRTTAQPAGQIVAHAVSAAAAARPATMGSPLFGSPLDSRFT 180 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F T++EGSSNRV+L AA++IAE G VR NPLF+H++VGLGKTHLLQAIANA+++ Sbjct: 181 FDTYVEGSSNRVSLAAAKTIAEA---GSGAVRFNPLFVHSTVGLGKTHLLQAIANAAVQN 237 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHL 283 NLRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDLL+IDDMQFLQGK+IQHEFCHL Sbjct: 238 PRNLRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHL 297 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 LN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ + DYEMR ILK RL + Sbjct: 298 LNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEVEAPDYEMRLEILKRRLEAA 357 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT 403 + EDP L I E+L HVAR VT SGREL+GAFNQL+FR SF P LT E DELL+HLV + Sbjct: 358 RLEDPSLEIPAELLSHVARNVTASGRELEGAFNQLIFRRSFEPNLTVERVDELLAHLVGS 417 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 GE +++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK +TPRSFPEIGRR Sbjct: 418 GEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRR 477 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTVLHAVRK+E+++ D L E+ELLKRLI+E Sbjct: 478 FGGRDHTTVLHAVRKIEELISGDSKLSHEIELLKRLINE 516 >gi|226309588|ref|YP_002769482.1| chromosomal replication initiation protein [Brevibacillus brevis NBRC 100599] gi|226092536|dbj|BAH40978.1| chromosomal replication initiator protein DnaA [Brevibacillus brevis NBRC 100599] Length = 453 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 253/473 (53%), Gaps = 25/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ ++ V ++++ + + +W + K ++ + + + P +F + W++ RY Sbjct: 1 MDAAISELWRKVLAKIEKSLSKPSFDTWLKATKATTLEEDALIVVAPNDFARDWLETRYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + IT E V+ + + P + P + P Sbjct: 61 QLITDTLYEVTGINMKVKFVALQNPDAAFADEQPVPRVKMSEPPTVADDQPP-------- 112 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 113 -----SILNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 162 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + I+ P+ +VVYL++E F F ++IRDN A+ ++ R++D+LLIDD+QF Sbjct: 163 HLMHAIGHYVIQHNPSAKVVYLSSEKFTNEFINSIRDNKAVEFRNKYRSVDVLLIDDIQF 222 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 223 LAGKESTQEEFFHTFNALHEESKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDL 282 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV+ ++A + ++ REL+GA ++V S + Sbjct: 283 ETRIAILRK-----KAKAENLDIPNEVMAYIANQIDSNIRELEGALIRVVAYSSLINRDI 337 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A E L ++ + + + I DIQR V + +++ D + +R +TV PRQ+AMYL Sbjct: 338 DTQLAAEALKDIIPSSRPRVITIIDIQRTVGEAFSLKLEDFKAKKRTKTVAFPRQIAMYL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ + L D ++ ++ L + Sbjct: 398 SRELTDASLPKIGDEFGGRDHTTVIHAHEKISRALANDPHMQTTIQSLIEKLK 450 >gi|168187277|ref|ZP_02621912.1| chromosomal replication initiator protein DnaA [Clostridium botulinum C str. Eklund] gi|169294801|gb|EDS76934.1| chromosomal replication initiator protein DnaA [Clostridium botulinum C str. Eklund] Length = 449 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 271/473 (57%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E +++ + +K ++ + +W + + S+ N + L VP +F + +++RY Sbjct: 1 MNAQLEQLWSKTLNIIKGELTEVSFNTWIKSISPISITENTIKLEVPNDFTRGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ +E + S + + +T N S +P I+ + Sbjct: 61 DLIINAIKLITSKKYNIEFSITSEEIFNNNQT------------NRTKSNNPNIV----V 104 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 105 NDEMTSILNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ PN +VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF Sbjct: 160 HLMHAIGHYILQNTPNAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 220 IAGKERTQEEFFHTFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 280 ETRIAILKK-----KADVENLDIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ + K++ IE IQ +V ++N+ +L S+RR R + PRQ+AMYL Sbjct: 335 SVDLAAEALKDIISSEQNKQVTIELIQDIVCNYFNLKIQELKSSRRTRNIAFPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ +L+ D +L+ ++ L + I+ Sbjct: 395 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNILKKDESLRNVIDDLNKKIT 447 >gi|56961783|ref|YP_173505.1| chromosomal replication initiation protein [Bacillus clausii KSM-K16] gi|61212498|sp|Q5WM31|DNAA_BACSK RecName: Full=Chromosomal replication initiator protein DnaA gi|56908017|dbj|BAD62544.1| chromosome replication initiator protein DnaA [Bacillus clausii KSM-K16] Length = 451 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 156/475 (32%), Positives = 271/475 (57%), Gaps = 27/475 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL-SVPTNFLKAWIKNRY 89 +E N + ++ V +K +V Y +W + K +++ +N + + P F + W+++ Y Sbjct: 1 ME-NIDDLWNKVLEEMKKKVSKPSYETWLRATKANALQNNDTIIVTAPNEFARDWLEDHY 59 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + ++ + G + + V ++ + P T +P +++ + Sbjct: 60 SGLTSDIIEQ----LTGARLTPKFVIPQHNQEEEALPEQTPQTPPEKDVAGQSTLS---- 111 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L+ ++ F+TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGK Sbjct: 112 -----QTMLNDKYTFNTFVIGSGNRFAHAASLAVAEAPARAY-----NPLFIYGGVGLGK 161 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + ++ PN +VVYL++E F F +AIRDN A++ ++ RN+D+LLIDD+Q Sbjct: 162 THLMHAIGHYVMEHNPNAKVVYLSSEKFTNEFINAIRDNKAVHFRNKYRNVDVLLIDDIQ 221 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 222 FIAGKIQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPD 281 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL+ + + L+I EV++++A + T+ REL+GA ++V S Sbjct: 282 LETRIAILRK-----KAKAENLDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINQD 336 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + A++A E L ++ K + I DIQ++V +H+ + D + +R ++V PRQ+AMY Sbjct: 337 MNADLAAEALKDIIPNAMPKTLTITDIQKLVGEHFQVKLEDFKAKKRTKSVAFPRQIAMY 396 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 LS+ MT S P+IG FG RDHTTV+HA K+ K+L TD L+++V+ + + + Sbjct: 397 LSREMTDASLPKIGSEFGGRDHTTVIHAHEKISKLLATDQELQQKVQAITEQLRQ 451 >gi|168207736|ref|ZP_02633741.1| chromosomal replication initiator protein DnaA [Clostridium perfringens E str. JGS1987] gi|170660929|gb|EDT13612.1| chromosomal replication initiator protein DnaA [Clostridium perfringens E str. JGS1987] Length = 457 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 258/474 (54%), Gaps = 20/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ +++ + +K ++ + +W + S+ NI+ LSVP F K + RY Sbjct: 1 MDAQLNNLWEQALNIIKGEISEISFNTWIKSCTPISISDNILKLSVPNEFTKGILDTRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + + SR +E +E + + + G + Sbjct: 61 DLLIQALKIVTSRKFKIEF--------YLESDLEEEKENEEKQKEQKKDNTNDVDGSIVV 112 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 113 SDEMSATLNPKYTFQSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 167 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +VVY+++E F +AI+D+ ++ R +D+LLIDD+QF Sbjct: 168 HLMHAIGHYILQENPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQF 227 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 228 IAGKERTQEEFFHTFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDF 287 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LN+ EV++++A + ++ REL+GA +++ S + Sbjct: 288 ETRMAILKK-----KADVEGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDV 342 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L +++ E+ + ++ IQ VA +YN+ DL S RR R + PRQ+AMYL Sbjct: 343 SVDLASEALKDIISNKESAPVTVKTIQESVANYYNLRIEDLKSQRRTRNIAYPRQIAMYL 402 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ + L+TD L+ + + + +++ Sbjct: 403 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISENLKTDEGLQSMINDITKKLTQ 456 >gi|110803386|ref|YP_697352.1| chromosomal replication initiation protein [Clostridium perfringens SM101] gi|123047633|sp|Q0SWX6|DNAA_CLOPS RecName: Full=Chromosomal replication initiator protein DnaA gi|110683887|gb|ABG87257.1| chromosomal replication initiator protein DnaA [Clostridium perfringens SM101] Length = 457 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 145/474 (30%), Positives = 258/474 (54%), Gaps = 20/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ +++ + +K ++ + +W + S+ NI+ LSVP F K + RY Sbjct: 1 MDAQLNNLWEQALNIIKGEISEISFNTWIKSCTPISISDNILKLSVPNEFTKGILDTRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + + SR +E +E + + + G + Sbjct: 61 DLLIQALKIVTSRKFKIEF--------YLESDLEEEKENEEKQKEEKKDNTNDVDGSIVV 112 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 113 SDEMSATLNPKYTFQSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 167 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +VVY+++E F +AI+D+ ++ R +D+LLIDD+QF Sbjct: 168 HLMHAIGHYILQENPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQF 227 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 228 IAGKERTQEEFFHTFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDF 287 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + L++ EV++++A + ++ REL+GA +++ S + Sbjct: 288 ETRMAILKK-----KADVEGLSVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDV 342 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L +++ E+ + ++ IQ VA +YN+ DL S RR R + PRQ+AMYL Sbjct: 343 SVDLASEALKDIISNKESAPVTVKTIQESVANYYNLRIEDLKSQRRTRNIAYPRQIAMYL 402 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ + L+TD L+ + + + +++ Sbjct: 403 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISENLKTDEGLQSMINDITKKLTQ 456 >gi|253573854|ref|ZP_04851196.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. oral taxon 786 str. D14] gi|251846331|gb|EES74337.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. oral taxon 786 str. D14] Length = 448 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 256/473 (54%), Gaps = 30/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + I+ + S + ++ + +WF+ K S+ + +S PT F W+++RY Sbjct: 1 MDSHTSEIWQHILSIINTKLSKPSFDTWFKATKVVSLTDQSIVISAPTTFAVEWLESRYT 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + E + V ++ A P + P S + + Sbjct: 61 KLVATTVFEVIGKQVDVSFVIEESAPPEQAQVYKEPPAPVPSEESVSH------------ 108 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 109 ------MLNPKYTFDTFVIGSGNRFAHAASLAVAEAPARAY-----NPLFLYGGVGLGKT 157 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P+ +VVY+++E F F ++IRDN A + ++ RNID+LLIDD+QF Sbjct: 158 HLMHAIGHYILEHSPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRNIDILLIDDIQF 217 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 218 LAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDL 277 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I E +M++A + T+ REL+GA ++V S + Sbjct: 278 ETRIAILRK-----KAKAENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLINQDI 332 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E L ++ + K + I+DIQ+ V ++YN+ +D + +R + + PRQ+AMYL Sbjct: 333 TTHLAAEALKDIIPSSRPKMITIQDIQQKVGEYYNLKLDDFKARKRTKAIAFPRQIAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IG FG RDHTTV+HA K+ + L+TD L K + + I Sbjct: 393 ARELTDFSLPKIGDAFGGRDHTTVIHAHEKITQQLKTDQELYKIINNITEKIK 445 >gi|209547613|ref|YP_002279530.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209533369|gb|ACI53304.1| chromosomal replication initiator protein DnaA [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 516 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 314/519 (60%), Positives = 377/519 (72%), Gaps = 20/519 (3%) Query: 1 MQLREVAACIQENDVEIAE--KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASW 58 MQ+ + A +N + + ++ E+ +F VS+RLK QVGPDVYASW Sbjct: 1 MQMNTMTAGGPDNGDVAPQAFGSIRLEGGDTKAEMKHSILFERVSARLKAQVGPDVYASW 60 Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL-- 116 F RLK HSV ++V LSVPT FLK+WI NRYL+ IT LFQ E I +E+LVR+ Sbjct: 61 FARLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITGLFQAEDPEIMKIEVLVRTATRSG 120 Query: 117 -----------PSVEKTASSPSITKLS--PINTNISKSPIILGKQTISPVFGSPLDSRFV 163 P V A P+ + + + +S SP+FGSPLDSRF Sbjct: 121 TKALDEAVQPEPVVAPQARRPASAQPAGQAVQQAVSSVAAARPASFGSPLFGSPLDSRFT 180 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TF+EGSSNRVAL AA++IAE G VR NPLFIH++VGLGKTHLLQAIANA+++ Sbjct: 181 FDTFVEGSSNRVALAAAKTIAEA---GSGAVRFNPLFIHSTVGLGKTHLLQAIANAAVQN 237 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHL 283 LRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDLL+IDDMQFLQGK+IQHEFCHL Sbjct: 238 PRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHL 297 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 LN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ DYEMR IL+ RLA + Sbjct: 298 LNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILRRRLAAA 357 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT 403 + EDP L+I E+L HVAR VT SGREL+GAFNQLVFR SF P L+ E DELL+HLV + Sbjct: 358 RLEDPSLDIPAELLQHVARNVTASGRELEGAFNQLVFRRSFEPNLSIERVDELLAHLVGS 417 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 GE +++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK +TPRSFPEIGRR Sbjct: 418 GEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRR 477 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTVLHAVRK+E+++ D L EVELLKRLI+E Sbjct: 478 FGGRDHTTVLHAVRKIEELISGDTKLSHEVELLKRLINE 516 >gi|226222640|ref|YP_002756747.1| Chromosomal replication initiation protein DnaA [Listeria monocytogenes Clip81459] gi|259645254|sp|C1L2Z8|DNAA_LISMC RecName: Full=Chromosomal replication initiator protein DnaA gi|225875102|emb|CAS03790.1| Chromosomal replication initiation protein DnaA [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 451 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 156/472 (33%), Positives = 261/472 (55%), Gaps = 29/472 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E I+ +K + Y +W + HS+ N +S P NF++ W++ Y + Sbjct: 2 QSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQF 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + QE R+ V + + E T P N + + + +GK Sbjct: 62 IANILQEITGRLFDVRF-IDGEQEENFEYTVIKP--------NPALDEDGVEIGKHM--- 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 110 -----LNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 159 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + + + N +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL Sbjct: 160 MHAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLA 219 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 220 GKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 279 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + + L+I EV++++A + ++ REL+GA ++V S +TA Sbjct: 280 RIAILRK-----KAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA 334 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L ++ + +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ Sbjct: 335 GLAAEALKDIIPSSKSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSR 394 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG FG RDHTTV+HA K+ ++L+TD LK ++ +++ + + Sbjct: 395 ELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEKNLRK 446 >gi|18308983|ref|NP_560917.1| chromosomal replication initiation protein [Clostridium perfringens str. 13] gi|110799791|ref|YP_694476.1| chromosomal replication initiation protein [Clostridium perfringens ATCC 13124] gi|168218306|ref|ZP_02643931.1| chromosomal replication initiator protein DnaA [Clostridium perfringens NCTC 8239] gi|169343457|ref|ZP_02864457.1| chromosomal replication initiator protein DnaA [Clostridium perfringens C str. JGS1495] gi|182627054|ref|ZP_02954779.1| chromosomal replication initiator protein DnaA [Clostridium perfringens D str. JGS1721] gi|38257694|sp|Q8XPG2|DNAA_CLOPE RecName: Full=Chromosomal replication initiator protein DnaA gi|123149082|sp|Q0TV64|DNAA_CLOP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|18143658|dbj|BAB79707.1| chromosomal replication initiator protein [Clostridium perfringens str. 13] gi|110674438|gb|ABG83425.1| chromosomal replication initiator protein DnaA [Clostridium perfringens ATCC 13124] gi|169298409|gb|EDS80498.1| chromosomal replication initiator protein DnaA [Clostridium perfringens C str. JGS1495] gi|177907580|gb|EDT70219.1| chromosomal replication initiator protein DnaA [Clostridium perfringens D str. JGS1721] gi|182379693|gb|EDT77172.1| chromosomal replication initiator protein DnaA [Clostridium perfringens NCTC 8239] Length = 457 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 258/474 (54%), Gaps = 20/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ +++ + +K ++ + +W + S+ NI+ LSVP F K + RY Sbjct: 1 MDAQLNNLWEQALNIIKGEISEISFNTWIKSCTPISISDNILKLSVPNEFTKGILDTRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + + SR +E +E + + + G + Sbjct: 61 DLLIQALKIVTSRKFKIEF--------YLESDLEEEKENEEKQKEEKKENTNDVDGSIVV 112 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 113 SDEMSATLNPKYTFQSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 167 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +VVY+++E F +AI+D+ ++ R +D+LLIDD+QF Sbjct: 168 HLMHAIGHYILQENPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQF 227 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 228 IAGKERTQEEFFHTFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDF 287 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LN+ EV++++A + ++ REL+GA +++ S + Sbjct: 288 ETRMAILKK-----KADVEGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDV 342 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L +++ E+ + ++ IQ VA +YN+ DL S RR R + PRQ+AMYL Sbjct: 343 SVDLASEALKDIISNKESAPVTVKTIQESVANYYNLRIEDLKSQRRTRNIAYPRQIAMYL 402 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ + L+TD L+ + + + +++ Sbjct: 403 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISENLKTDEGLQSMINDITKKLTQ 456 >gi|77358983|ref|YP_338558.1| DNA replication initiator [Pseudoalteromonas haloplanktis TAC125] gi|76873894|emb|CAI85115.1| DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes, binds cardiolipin and other acidic phospholipids, binds ATP [Pseudoalteromonas haloplanktis TAC125] Length = 474 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 148/469 (31%), Positives = 257/469 (54%), Gaps = 17/469 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ L++++ ++ W + L+ S + + + P F+ W++ +YL I +L Sbjct: 18 SVWQSCLYVLQDELPSQQFSMWVRPLQAES-TEDTLTIYAPNRFVLDWVREKYLNRINEL 76 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT--NISKSPIILGKQTISPVF 154 E ++ E+ + P + S + T+ +P S+ P + + + Sbjct: 77 LVEICG-VEAPELRFDVGSKPLLNAQPVSVAGTQSAPTTQAKQQSRQPKPVVEPAPKSEY 135 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S + + F +F+EG SN++A AA +A+ NP+FI+ GLGKTHLL Sbjct: 136 KSNIKENYTFDSFVEGKSNQLAKAAATQVADNPGAA-----FNPVFIYGGTGLGKTHLLH 190 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + +P+ ++VY+ +E F+ A+++N K R++D L+IDD+QF K Sbjct: 191 AVGNGILANKPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANK 250 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E R Sbjct: 251 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRV 310 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + + K+N+ EV +A+ + ++ REL+GA N+++ +F ++ + Sbjct: 311 AIL-----MKKAQQSKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDF 365 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQR VA++Y I +DLLS RR R++ RPRQVAM LSK + Sbjct: 366 VKEALRDLLALQ-DKLVTIDNIQRTVAEYYRIRISDLLSKRRSRSIARPRQVAMALSKEL 424 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RKV+ + + +K++ + L R +S Sbjct: 425 TNHSLPEIGDAFGGRDHTTVLHACRKVKSLRDESHEIKEDYQNLIRTLS 473 >gi|289433374|ref|YP_003463246.1| chromosomal replication initiator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169618|emb|CBH26152.1| chromosomal replication initiator protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 451 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 157/472 (33%), Positives = 261/472 (55%), Gaps = 29/472 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E I+ +K + Y +W + HS+ N +S P NF++ W++ Y + Sbjct: 2 QSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQF 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + QE R+ V + + E T PS + + I +GK Sbjct: 62 IANILQEITGRLFDVRF-IDGEQEENFEYTVIKPSPA--------LDEDGIEIGKHM--- 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 110 -----LNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 159 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + + + N +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL Sbjct: 160 MHAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLA 219 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 220 GKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 279 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + + L+I EV++++A + ++ REL+GA ++V S +TA Sbjct: 280 RIAILRK-----KAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA 334 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L ++ + +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ Sbjct: 335 GLAAEALKDIIPSSKSQVITISGIQETVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSR 394 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG FG RDHTTV+HA K+ ++L+TD LK ++ +++ + + Sbjct: 395 ELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEKNLRK 446 >gi|75761786|ref|ZP_00741721.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490719|gb|EAO54000.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 447 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 149/452 (32%), Positives = 249/452 (55%), Gaps = 28/452 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ L+ +V Y +W + H++ +++ ++ P F + W+++ Y E I Sbjct: 22 NISDLWNSALKELEKKVSKPSYETWLKSTTAHNLKKDVLTITAPNEFARDWLESHYSELI 81 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + + ++ + + L P+ N + + + Sbjct: 82 SETLYDLTGAKLAIRFII---------PQSQAEEDIDLPPVKRN-------PAQDDSAHL 125 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 126 PQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLM 180 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL G Sbjct: 181 HAIGHYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAG 240 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 241 KEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETR 300 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + L+I EV++++A + ++ REL+GA ++V S + A+ Sbjct: 301 IAILRK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINAD 355 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ Sbjct: 356 LAAEALKDIIPNSKPKIISIYDIQKAVGDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRE 415 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +T S P IG FG RDHTTV+HA K+ K+L Sbjct: 416 LTDSSLPNIGEEFGGRDHTTVIHAHEKISKLL 447 >gi|90581124|ref|ZP_01236923.1| chromosomal replication initiation protein [Vibrio angustum S14] gi|90437645|gb|EAS62837.1| chromosomal replication initiation protein [Vibrio angustum S14] Length = 466 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 255/476 (53%), Gaps = 21/476 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + + + L P F+ W++++YL I Sbjct: 2 SSSLWLQCLQRLQEELPATEFSMWLRPLQA-ELNDHTLTLFAPNRFVLDWVRDKYLNNIN 60 Query: 95 KLFQEEHSRIQG---VEILVRSVALPSVEKTASSPSITKLSPI---NTNISKSPIILGKQ 148 +L E E+ + VA ++ K P + P Q Sbjct: 61 RLLNEFCGADAPSLHFEVGSKPVAAAPQPVAPPVFTLPKSKPAVEPQPAVQHEPEPSPVQ 120 Query: 149 TISPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 SP + S ++ + F+ F+EG SN++ L A + +++ Y NPLF++ GL Sbjct: 121 NESPGGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAY-----NPLFLYGGTGL 175 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ NA R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 176 GKTHLLHAVGNAIANRKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 235 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEP 295 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ED + + +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 PELETRVAIL-----MKKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTG 350 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+A Sbjct: 351 RAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMA 409 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 465 >gi|16799080|ref|NP_469348.1| chromosomal replication initiation protein [Listeria innocua Clip11262] gi|116871423|ref|YP_848204.1| chromosomal replication initiation protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|21362477|sp|Q92FV2|DNAA_LISIN RecName: Full=Chromosomal replication initiator protein DnaA gi|123460548|sp|A0AEI7|DNAA_LISW6 RecName: Full=Chromosomal replication initiator protein DnaA gi|16412422|emb|CAC95234.1| Chromosomal replication initiation protein DnaA [Listeria innocua Clip11262] gi|116740301|emb|CAK19419.1| chromosomal replication initiation protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|313621673|gb|EFR92458.1| chromosomal replication initiator protein DnaA [Listeria innocua FSL S4-378] gi|313625799|gb|EFR95415.1| chromosomal replication initiator protein DnaA [Listeria innocua FSL J1-023] Length = 451 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 157/472 (33%), Positives = 261/472 (55%), Gaps = 29/472 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E I+ +K + Y +W + HS+ N +S P NF++ W++ Y + Sbjct: 2 QSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQF 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + QE R+ V + + E T P N + + I +GK Sbjct: 62 IANILQEITGRLFDVRF-IDGEQEENFEYTVIKP--------NPALDEDGIEIGKHM--- 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 110 -----LNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 159 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + + + N +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL Sbjct: 160 MHAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLA 219 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 220 GKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 279 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + + L+I EV++++A + ++ REL+GA ++V S +TA Sbjct: 280 RIAILRK-----KAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA 334 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L ++ + +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ Sbjct: 335 GLAAEALKDIIPSSKSQVITISGIQETVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSR 394 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG FG RDHTTV+HA K+ ++L+TD LK ++ +++ + + Sbjct: 395 ELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEKNLRK 446 >gi|241202756|ref|YP_002973852.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240856646|gb|ACS54313.1| chromosomal replication initiator protein DnaA [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 516 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 308/519 (59%), Positives = 374/519 (72%), Gaps = 20/519 (3%) Query: 1 MQLREVAACIQENDVEIAE--KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASW 58 MQ+ + +N + + ++ + ++ +F V++RLK QVG DVYASW Sbjct: 1 MQMNTMTTSGLDNGDAAPQAFGSIRLEAAEVKADMKQNVLFERVTARLKAQVGQDVYASW 60 Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS 118 F RLK HSV ++V LSVPT FLK+WI NRYL+ IT LFQ E I +E+LVR+ Sbjct: 61 FARLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITGLFQAEDPEILKIEVLVRTATRHG 120 Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTI---------------SPVFGSPLDSRFV 163 + + + +P S G+ SP+FGSPLDSRF Sbjct: 121 TKALDEAVAPEPAAPTQMRRPASAQPAGQAVQQAVSAVAAARPASFGSPLFGSPLDSRFT 180 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F TF+EGSSNRVAL AA++IAE G VR NPLFIH++VGLGKTHLLQA+ANA+++ Sbjct: 181 FDTFVEGSSNRVALAAAKTIAEA---GQGAVRFNPLFIHSTVGLGKTHLLQAVANAAVQN 237 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHL 283 LRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDLL+IDDMQFLQGK+IQHEFCHL Sbjct: 238 PRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKMIQHEFCHL 297 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 LN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ DYEMR ILK RLA++ Sbjct: 298 LNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIEFDAPDYEMRLEILKRRLAVA 357 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT 403 + EDP L I E+L HVAR VT SGREL+GAFNQLVFR SF P L+ E DELL+HLV + Sbjct: 358 RLEDPSLEIPAELLQHVARNVTASGRELEGAFNQLVFRRSFEPNLSIERVDELLAHLVGS 417 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 GE +++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK +TPRSFPEIGRR Sbjct: 418 GEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPRSFPEIGRR 477 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTVLHAVRK+E+++ D L EVELLKRLI+E Sbjct: 478 FGGRDHTTVLHAVRKIEELISGDTKLSHEVELLKRLINE 516 >gi|16802049|ref|NP_463534.1| chromosomal replication initiation protein [Listeria monocytogenes EGD-e] gi|46906225|ref|YP_012614.1| chromosomal replication initiation protein [Listeria monocytogenes serotype 4b str. F2365] gi|217965934|ref|YP_002351612.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HCC23] gi|224498306|ref|ZP_03666655.1| chromosomal replication initiation protein [Listeria monocytogenes Finland 1988] gi|254824779|ref|ZP_05229780.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL J1-194] gi|254827425|ref|ZP_05232112.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL N3-165] gi|254830707|ref|ZP_05235362.1| chromosomal replication initiation protein [Listeria monocytogenes 10403S] gi|254899685|ref|ZP_05259609.1| chromosomal replication initiation protein [Listeria monocytogenes J0161] gi|254913112|ref|ZP_05263124.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes J2818] gi|254930868|ref|ZP_05264227.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HPB2262] gi|254937493|ref|ZP_05269190.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes F6900] gi|254991923|ref|ZP_05274113.1| chromosomal replication initiation protein [Listeria monocytogenes FSL J2-064] gi|255026750|ref|ZP_05298736.1| chromosomal replication initiation protein [Listeria monocytogenes FSL J2-003] gi|255028897|ref|ZP_05300848.1| chromosomal replication initiation protein [Listeria monocytogenes LO28] gi|255520069|ref|ZP_05387306.1| chromosomal replication initiation protein [Listeria monocytogenes FSL J1-175] gi|284803265|ref|YP_003415130.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5578] gi|284996406|ref|YP_003418174.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5923] gi|290892037|ref|ZP_06555034.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL J2-071] gi|300763385|ref|ZP_07073383.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL N1-017] gi|315273163|ref|ZP_07869210.1| chromosomal replication initiator protein DnaA [Listeria marthii FSL S4-120] gi|21362468|sp|Q8YAW2|DNAA_LISMO RecName: Full=Chromosomal replication initiator protein DnaA gi|61212634|sp|Q725H0|DNAA_LISMF RecName: Full=Chromosomal replication initiator protein DnaA gi|254777905|sp|B8DAQ9|DNAA_LISMH RecName: Full=Chromosomal replication initiator protein DnaA gi|16409360|emb|CAC98216.1| Chromosomal replication initiation protein DnaA [Listeria monocytogenes EGD-e] gi|46879489|gb|AAT02791.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes serotype 4b str. F2365] gi|217335204|gb|ACK40998.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HCC23] gi|258599803|gb|EEW13128.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL N3-165] gi|258610095|gb|EEW22703.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes F6900] gi|284058827|gb|ADB69768.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5578] gi|284061873|gb|ADB72812.1| chromosomal replication initiation protein [Listeria monocytogenes 08-5923] gi|290558631|gb|EFD92148.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL J2-071] gi|293582413|gb|EFF94445.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes HPB2262] gi|293591114|gb|EFF99448.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes J2818] gi|293594018|gb|EFG01779.1| chromosomal replication initiation protein DnaA [Listeria monocytogenes FSL J1-194] gi|300515662|gb|EFK42711.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL N1-017] gi|307569524|emb|CAR82703.1| chromosomal replication initiator protein [Listeria monocytogenes L99] gi|313616214|gb|EFR89292.1| chromosomal replication initiator protein DnaA [Listeria marthii FSL S4-120] gi|328468322|gb|EGF39328.1| chromosomal replication initiation protein [Listeria monocytogenes 1816] gi|332310334|gb|EGJ23429.1| Chromosomal replication initiator protein dnaA [Listeria monocytogenes str. Scott A] Length = 451 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 157/472 (33%), Positives = 261/472 (55%), Gaps = 29/472 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E I+ +K + Y +W + HS+ N +S P NF++ W++ Y + Sbjct: 2 QSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQF 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + QE R+ V + + E T P N + + I +GK Sbjct: 62 IANILQEITGRLFDVRF-IDGEQEENFEYTVIKP--------NPALDEDGIEIGKHM--- 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 110 -----LNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 159 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + + + N +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL Sbjct: 160 MHAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLA 219 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 220 GKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 279 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + + L+I EV++++A + ++ REL+GA ++V S +TA Sbjct: 280 RIAILRK-----KAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA 334 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L ++ + +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ Sbjct: 335 GLAAEALKDIIPSSKSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSR 394 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG FG RDHTTV+HA K+ ++L+TD LK ++ +++ + + Sbjct: 395 ELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEKNLRK 446 >gi|315125112|ref|YP_004067115.1| DNA replication initiator [Pseudoalteromonas sp. SM9913] gi|315013625|gb|ADT66963.1| DNA replication initiator [Pseudoalteromonas sp. SM9913] Length = 476 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 257/471 (54%), Gaps = 19/471 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ L++++ ++ W + L+ S + + + P F+ W++ +YL I +L Sbjct: 18 SVWQSCLYVLQDELPSQQFSMWVRPLQAES-TEDTLTIYAPNRFVLDWVREKYLNRINEL 76 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV--- 153 E ++ E+ + P + A+ ++ +P +K K + P Sbjct: 77 LVEICG-VEAPELRFDVGSKPLLNAQAAPVVESQSAPSTQATAKQQPREQKPVVEPAPKS 135 Query: 154 -FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S + + F +F+EG SN++A AA +A+ NP+FI+ GLGKTHL Sbjct: 136 GYKSNIKENYTFDSFVEGKSNQLAKAAATQVADNPGSA-----FNPVFIYGGTGLGKTHL 190 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + +P+ ++VY+ +E F+ A+++N K R++D L+IDD+QF Sbjct: 191 LHAVGNGIMANKPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFA 250 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E Sbjct: 251 NKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELET 310 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + + K+N+ EV +A+ + ++ REL+GA N+++ +F ++ Sbjct: 311 RVAIL-----MKKAQQSKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISI 365 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQR VA++Y I +DLLS RR R++ RPRQVAM LSK Sbjct: 366 DFVKEALRDLLALQ-DKLVTIDNIQRTVAEYYRIRVSDLLSKRRSRSIARPRQVAMALSK 424 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RKV+ + + +K++ + L R +S Sbjct: 425 ELTNHSLPEIGDAFGGRDHTTVLHACRKVKSLRDESHEIKEDYQNLIRTLS 475 >gi|89074702|ref|ZP_01161160.1| chromosomal replication initiation protein [Photobacterium sp. SKA34] gi|89049466|gb|EAR55027.1| chromosomal replication initiation protein [Photobacterium sp. SKA34] Length = 466 Score = 504 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 155/476 (32%), Positives = 256/476 (53%), Gaps = 21/476 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + + + L P F+ W++++YL I Sbjct: 2 SSSLWLQCLQRLQEELPATEFSMWLRPLQA-ELNDHTLTLFAPNRFVLDWVRDKYLNNIN 60 Query: 95 KLFQEEHSRIQG---VEILVRSVALPSVEKTASSPSITKLSPI---NTNISKSPIILGKQ 148 +L E E+ + VA P ++ K P + P Q Sbjct: 61 RLLNEFCGADAPSLHFEVGSKPVAAPPQPVAPPVFTLPKSKPAVEPQPAVHHEPAPSPVQ 120 Query: 149 TISPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 SP + S ++ + F+ F+EG SN++ L A + +++ Y NPLF++ GL Sbjct: 121 NESPGGYRSNVNPKHNFNNFVEGKSNQLGLAACRQVSDNPGAAY-----NPLFLYGGTGL 175 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+ NA R+PN +VVY+ +E F+ A+++N K R++D LLIDD Sbjct: 176 GKTHLLHAVGNAIANRKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDD 235 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 IQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEP 295 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R +IL + + ED + + +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 PELETRVAIL-----MKKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTG 350 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T + E L L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+A Sbjct: 351 RAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMA 409 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 MALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 465 >gi|261403877|ref|YP_003240118.1| chromosomal replication initiation protein [Paenibacillus sp. Y412MC10] gi|329925078|ref|ZP_08280022.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. HGF5] gi|261280340|gb|ACX62311.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. Y412MC10] gi|328940197|gb|EGG36529.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. HGF5] Length = 448 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 156/473 (32%), Positives = 263/473 (55%), Gaps = 30/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++ + S ++ ++ + +WF+ K ++ + V +S PT F W+++RY Sbjct: 1 MESHTSELWQEILSIIQTKLSKPSFDTWFKATKALTINDHSVVISAPTTFAVEWLESRYT 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + ++ E + V ++ E A P+ + SP P+ + + I Sbjct: 61 KLVSATVLEVVGKQVDVRFVIE-------ETKAHEPAPQQPSP--------PLEISGEEI 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 106 QSHM---LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 157 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P+ +VVY+++E F F ++IRDN A + ++ RN+D+LLIDD+QF Sbjct: 158 HLMHAIGHYILEHNPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRNVDILLIDDIQF 217 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 218 LAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDL 277 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I E +M++A + T+ REL+GA ++V S + Sbjct: 278 ETRIAILRK-----KAKAENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDV 332 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E L ++ + + + I+DIQ+ V ++YN+ D + +R + V PRQ+AMYL Sbjct: 333 TTHLAAEALKDIIPSSRPRMITIQDIQQKVGEYYNLRLEDFKARKRTKAVAFPRQIAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ + L+TD L K V + I Sbjct: 393 SRELTDYSLPKIGEAFGGRDHTTVIHAHEKITQSLKTDQELFKVVNNITEKIK 445 >gi|224503076|ref|ZP_03671383.1| chromosomal replication initiation protein [Listeria monocytogenes FSL R2-561] Length = 443 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 157/469 (33%), Positives = 260/469 (55%), Gaps = 29/469 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E I+ +K + Y +W + HS+ N +S P NF++ W++ Y + Sbjct: 2 QSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQF 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + QE R+ V + + E T P N + + I +GK Sbjct: 62 IANILQEITGRLFDVRF-IDGEQEENFEYTVIKP--------NPALDEDGIEIGKHM--- 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 110 -----LNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 159 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + + + N +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL Sbjct: 160 MHAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLA 219 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 220 GKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 279 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + + L+I EV++++A + ++ REL+GA ++V S +TA Sbjct: 280 RIAILRK-----KAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA 334 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L ++ + +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ Sbjct: 335 GLAAEALKDIIPSSKSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSR 394 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 +T S P+IG FG RDHTTV+HA K+ ++L+TD LK ++ ++++ Sbjct: 395 ELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEKI 443 >gi|147676336|ref|YP_001210551.1| chromosomal replication initiation protein [Pelotomaculum thermopropionicum SI] gi|146272433|dbj|BAF58182.1| ATPase [Pelotomaculum thermopropionicum SI] Length = 447 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 145/466 (31%), Positives = 248/466 (53%), Gaps = 31/466 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L+ ++ + +W + LK N V + VP +F + W+ RY I + Sbjct: 8 DLWEKALQFLEKKINRHSFETWLKPLKPLGYHENTVIIEVPNHFSREWLNERYAPLIKNI 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F+ + GV+ L+ S+ + P+ + K Sbjct: 68 FRHILEQDIGVQFLLSGEV-----------SVVESDPLKKAV--------KNNFEEASTI 108 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ ++ F TF+ G+SNR A A ++AE + Y NPLFI+ VGLGKTHL+ AI Sbjct: 109 HLNPKYTFDTFVVGNSNRFAHAACLAVAESPAKAY-----NPLFIYGGVGLGKTHLMHAI 163 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 ++ ++V Y+T+E F +AI+D+ + ++ R +D+LL+DD+QFL GK Sbjct: 164 GQHILEHSNKMKVSYVTSEKFTNELINAIKDDKTVEFRNKYRGMDILLVDDIQFLAGKER 223 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +I Sbjct: 224 TQEEFFHTFNTLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAI 283 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L+ + + L + ++ + ++A + ++ REL+GA +++ S ++ E+A Sbjct: 284 LRK-----KSQQENLFVPDDTIFYIANRIQSNIRELEGALIRVIAYASLNGKEISPELAA 338 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+L ++ + +++ +E IQ +VA +YNI D S R R V PRQVAMYL++ +T Sbjct: 339 EVLKDILPPEKPRQITVELIQEVVAGYYNIRVEDFKSKNRSRAVAFPRQVAMYLARELTD 398 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG FG RDHTTV+HA K+ L D++L++ ++ L I Sbjct: 399 LSLPKIGEYFGGRDHTTVIHAYEKINNELNIDMSLQESIKQLISKI 444 >gi|302872923|ref|YP_003841556.1| chromosomal replication initiator protein DnaA [Clostridium cellulovorans 743B] gi|307687876|ref|ZP_07630322.1| chromosomal replication initiation protein [Clostridium cellulovorans 743B] gi|302575780|gb|ADL49792.1| chromosomal replication initiator protein DnaA [Clostridium cellulovorans 743B] Length = 451 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 260/474 (54%), Gaps = 26/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V+ I+ + +K ++ + +W + + + + VP +F + +++RY Sbjct: 1 MNVHLSDIWDKTLTIIKGELTEVSFNTWIKSITPEYIDDTTITFGVPNDFTRGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + S+ VE + ++ + S P I K I T Sbjct: 61 DLVINAINMVTSKKYNVEFKI--ISEDVITSDDSEPKIQKQHIIATVSPDE--------- 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F++F+ G+SNR A A ++AE + Y NPLFI+ VGLGKT Sbjct: 110 ---MNSVLNPKYTFNSFVIGNSNRFAHAACLAVAESPAKAY-----NPLFIYGGVGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + +K +V Y+++E F ++I+D+ ++ RN+DLLLIDD+QF Sbjct: 162 HLMHAIGHYILKNNSKAKVAYVSSEKFTNELINSIKDDKNEEFRNKYRNVDLLLIDDIQF 221 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 222 IAGKERTQEEFFHTFNALYDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDF 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + KLN+ EVL ++A T+ ++ REL+GA ++V S + Sbjct: 282 ETRIAILKK-----KADVEKLNVPNEVLTYIATTIKSNIRELEGALIRIVAFSSLTNKEI 336 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L +++ TK++ IE IQ +VA +YN+ D S RR + + PRQ+AM+L Sbjct: 337 SVDLAQEALKDIISNRATKQITIELIQEIVASYYNLKIEDFKSARRTKNIAYPRQIAMFL 396 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IG FG RDHTTV+HA K+ + ++D +LK +E+L + I++ Sbjct: 397 CRKLTDNSLPKIGEEFGGRDHTTVIHAYEKINEAYKSDESLKNIIEILTKRINQ 450 >gi|118444635|ref|YP_879298.1| chromosomal replication initiation protein [Clostridium novyi NT] gi|166201879|sp|A0Q3U6|DNAA_CLONN RecName: Full=Chromosomal replication initiator protein DnaA gi|118135091|gb|ABK62135.1| chromosomal replication initiator protein DnaA [Clostridium novyi NT] Length = 448 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 267/473 (56%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++T + +K ++ + +W + + S+ N + L VP +F + +++RY Sbjct: 1 MNAQLKQLWTKTLNIIKGELTEVSFNTWIKSISPISMNENTIKLEVPNDFTRGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ +E + S + + ++ S + + Sbjct: 61 DLIINAIKLITSKKYNIEFSITSEEIFNNQQLKPKSSNDNI-----------------VV 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NDEMTSILNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ PN +VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF Sbjct: 159 HLMHAIGHYILQNTPNAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQF 218 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 219 IAGKERTQEEFFHTFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + L+I EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRIAILKK-----KADVENLDIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ + K++ IE IQ +V ++N+ +L S+RR R + PRQ+AMYL Sbjct: 334 SVDLAAEALKDIISSEQNKQITIELIQDIVCNYFNLKIQELKSSRRTRNIAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ +L+ D +L+ ++ L + I+ Sbjct: 394 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNILKKDESLRNVIDDLNKKIT 446 >gi|331270706|ref|YP_004397198.1| chromosomal replication initiator protein DnaA [Clostridium botulinum BKT015925] gi|329127256|gb|AEB77201.1| chromosomal replication initiator protein DnaA [Clostridium botulinum BKT015925] Length = 450 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 153/473 (32%), Positives = 268/473 (56%), Gaps = 27/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E +++ + +K ++ + +W + + S+ N + L VP +F + +++RY Sbjct: 1 MNAQLEQLWSKTLNIIKGELTEVSFNTWIKSISPISIDENTIKLQVPNDFTRGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ +E + S E ++ T L N NI I Sbjct: 61 DLIINAIKLITSKKYNIEFSITSE-----EVLNNNHLNTTLKSNNENI----------VI 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 106 NDEMTSILNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P+ +VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF Sbjct: 161 HLMHAIGHYILQNTPSAKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQF 220 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 221 IAGKERTQEEFFHTFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LNI EV++++A + ++ REL+GA ++V S + Sbjct: 281 ETRIAILKK-----KADVENLNIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREV 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ + K++ I+ IQ +V +YN+ DL S+RR R + PRQ+AMYL Sbjct: 336 SVDLAAEALKDIISSEQNKQVTIDLIQDIVCNYYNLKIQDLKSSRRTRNIAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ +L+ D +L+ + L + I+ Sbjct: 396 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISTILKKDESLRNVINDLNKKIT 448 >gi|317126742|ref|YP_004093024.1| chromosomal replication initiator protein DnaA [Bacillus cellulosilyticus DSM 2522] gi|315471690|gb|ADU28293.1| chromosomal replication initiator protein DnaA [Bacillus cellulosilyticus DSM 2522] Length = 451 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 160/475 (33%), Positives = 261/475 (54%), Gaps = 28/475 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNR 88 +E N ++ +++ +V + +WF+ K S+ + ++V P F + W++NR Sbjct: 1 ME-NLNDLWDQALKKIEEKVSKPSFDTWFKFTKADSIDQSTNTITVIAPNEFARDWLENR 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y IT+ E ++ + +P+ TN K + Sbjct: 60 YFAIITETLNELTGAELEARFILPKEDKNDDIELLEKVKSPSKAPVTTNDEKPKHM---- 115 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLG Sbjct: 116 ---------LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLG 161 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + I +PN +VVYL++E F F ++IRDN A+N ++ RN+D+LLIDD+ Sbjct: 162 KTHLMHAIGHYVIDHKPNAKVVYLSSEKFTNEFINSIRDNKAVNFRNKYRNVDVLLIDDI 221 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L + KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 222 QFLAGKEQTQEEFFHTFNALHEERKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPP 281 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 D E R +IL+ + + L+I EV++++A + T+ REL+GA ++V S Sbjct: 282 DLETRIAILRK-----KAKAENLDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINQ 336 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + A++A L ++ + K + I+DIQ+ VA+ + I +L + +R + V PRQ+AM Sbjct: 337 DMNADLAAVALKDIIPNAKPKTITIKDIQKTVAETFQIRVEELKAKKRTKNVAYPRQIAM 396 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YLS+ +T S P+IG FG RDHTTV+HA K+ K+ TD L+K+++ +K + Sbjct: 397 YLSRELTDNSLPKIGTEFGGRDHTTVIHAHEKITKLFSTDSDLQKQIQEIKDQLK 451 >gi|315644300|ref|ZP_07897470.1| chromosomal replication initiation protein [Paenibacillus vortex V453] gi|315280675|gb|EFU43964.1| chromosomal replication initiation protein [Paenibacillus vortex V453] Length = 448 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 154/473 (32%), Positives = 261/473 (55%), Gaps = 30/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++ + S ++ ++ + +WF+ K ++ + V +S PT F W+++RY Sbjct: 1 MESHTSELWQEILSIIQTKLSKPSFDTWFKATKALTINDHSVVISAPTTFAVEWLESRYT 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + ++ E + V ++ E P + + SP P+ + + I Sbjct: 61 KLVSATVLEVVGKQVDVRFVIE-------EAKGHEPVLQQPSP--------PLEISGEEI 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 106 QSHM---LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 157 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P+ +VVY+++E F F ++IRDN A + ++ R++D+LLIDD+QF Sbjct: 158 HLMHAIGHYILEHNPSSKVVYISSEKFTNEFINSIRDNRAESFRNKYRSVDILLIDDIQF 217 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 218 LAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDL 277 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I E +M++A + T+ REL+GA ++V S + Sbjct: 278 ETRIAILRK-----KAKAENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDV 332 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E L ++ + + + I+DIQ+ V ++YN+ D + +R + V PRQ+AMYL Sbjct: 333 TTHLAAEALKDIIPSSRPRMITIQDIQQKVGEYYNLRLEDFKARKRTKAVAFPRQIAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ + L+ D L K V L I Sbjct: 393 SRELTDYSLPKIGEAFGGRDHTTVIHAHEKITQSLKNDQELFKVVNNLTEKIK 445 >gi|209693643|ref|YP_002261571.1| chromosomal replication initiation protein [Aliivibrio salmonicida LFI1238] gi|226735772|sp|B6EP46|DNAA_ALISL RecName: Full=Chromosomal replication initiator protein DnaA gi|208007594|emb|CAQ77694.1| chromosomal replication initiator protein DnaA [Aliivibrio salmonicida LFI1238] Length = 468 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 154/478 (32%), Positives = 261/478 (54%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQRLQEELPSAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 L E E+ + ++ P + ++ S ++ + ++ Sbjct: 61 SLLNEFCGGDIPTLRFEVGSKPISAPPRPQRTAADVAAATSAPAQMQARQSLHKPWESRG 120 Query: 152 P------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 P S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 PEPVDDLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLLQA+ NA ++R+PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLQAVGNAILERKPNAKVVYMHSERFVQDMVKALQNNAIEEFKCYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N++V +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVVANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM LSK +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 410 LAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYSNLIRTLS 467 >gi|29653365|ref|NP_819057.1| chromosomal replication initiation protein [Coxiella burnetii RSA 493] gi|154706441|ref|YP_001423440.1| chromosomal replication initiation protein [Coxiella burnetii Dugway 5J108-111] gi|161830473|ref|YP_001595901.1| chromosomal replication initiation protein [Coxiella burnetii RSA 331] gi|164685862|ref|ZP_01947694.2| chromosomal replication initiator protein DnaA [Coxiella burnetii 'MSU Goat Q177'] gi|165924211|ref|ZP_02220043.1| chromosomal replication initiator protein DnaA [Coxiella burnetii RSA 334] gi|212211670|ref|YP_002302606.1| chromosomal replication initiation protein [Coxiella burnetii CbuG_Q212] gi|212217689|ref|YP_002304476.1| chromosomal replication initiation protein [Coxiella burnetii CbuK_Q154] gi|38257444|sp|Q83FD8|DNAA_COXBU RecName: Full=Chromosomal replication initiator protein DnaA gi|189044636|sp|A9KEU8|DNAA_COXBN RecName: Full=Chromosomal replication initiator protein DnaA gi|189044637|sp|A9N900|DNAA_COXBR RecName: Full=Chromosomal replication initiator protein DnaA gi|226735796|sp|B6J8S3|DNAA_COXB1 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735797|sp|B6J287|DNAA_COXB2 RecName: Full=Chromosomal replication initiator protein DnaA gi|29540627|gb|AAO89571.1| chromosomal replication initiator protein [Coxiella burnetii RSA 493] gi|154355727|gb|ABS77189.1| chromosomal replication initiator protein [Coxiella burnetii Dugway 5J108-111] gi|161762340|gb|ABX77982.1| chromosomal replication initiator protein DnaA [Coxiella burnetii RSA 331] gi|164601379|gb|EAX31682.2| chromosomal replication initiator protein DnaA [Coxiella burnetii 'MSU Goat Q177'] gi|165916345|gb|EDR34949.1| chromosomal replication initiator protein DnaA [Coxiella burnetii RSA 334] gi|212010080|gb|ACJ17461.1| chromosomal replication initiator protein [Coxiella burnetii CbuG_Q212] gi|212011951|gb|ACJ19331.1| chromosomal replication initiator protein [Coxiella burnetii CbuK_Q154] Length = 451 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 162/469 (34%), Positives = 257/469 (54%), Gaps = 28/469 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ L++++ P Y +W + L N + L P F+ WI R+L IT+L Sbjct: 6 SLWDKCLGYLRDEIPPQQYNTWIRPLHAIESKQNGLLLLAPNRFVLDWINERFLNRITEL 65 Query: 97 FQEEHSRIQGVEILV--RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 E + + + RS +P+ S P T IS + Sbjct: 66 LDELSDTPPQIRLQIGSRSTEMPTKNSHEPSHRKAAAPPAGTTISHTQ------------ 113 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + ++S F F +F+EG SN++A AA +AE Y NPLFI+ VGLGKTHL+ Sbjct: 114 -ANINSNFTFDSFVEGKSNQLARAAATQVAENPGQAY-----NPLFIYGGVGLGKTHLMH 167 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA +++ + +V+YL +E F+ A++ N K R+++ LLIDD+QF GK Sbjct: 168 AVGNAILRKDSSKKVLYLHSERFVADMIKALQHNAMNEFKRFYRSLNALLIDDIQFFAGK 227 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LLD +Q++ DR P E+ L+ R++SR G++V + + E R Sbjct: 228 DRSQEEFFHTFNALLDGQQQIILTCDRYPKEINGLEERLQSRFGWGLTVAIEPPELETRV 287 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL +S+ E K+++ EV +A+ + ++ REL+GA +++ F +T + Sbjct: 288 AIL-----MSKAEQLKVHLPHEVAFFIAKHIQSNVRELEGALKRVIANAHFTGQSITVDF 342 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ T + + + IE+IQ+ VA++Y I DLL+ RR R+V RPRQ+AM L+K + Sbjct: 343 TREALKDLL-TLQARLITIENIQKTVAEYYKIKVADLLAKRRNRSVARPRQMAMALAKEL 401 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RKV+++L T + + ++ + L R++S Sbjct: 402 TNHSLPEIGDAFGGRDHTTVLHACRKVKELLATSLDILEDYKNLMRILS 450 >gi|170022263|ref|YP_001718768.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis YPIII] gi|186893345|ref|YP_001870457.1| chromosomal replication initiation protein [Yersinia pseudotuberculosis PB1/+] gi|169748797|gb|ACA66315.1| chromosomal replication initiator protein DnaA [Yersinia pseudotuberculosis YPIII] gi|186696371|gb|ACC87000.1| chromosomal replication initiator protein DnaA [Yersinia pseudotuberculosis PB1/+] Length = 450 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 145/461 (31%), Positives = 245/461 (53%), Gaps = 17/461 (3%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS--- 102 +++++ ++ W + L+ + N + L P F+ W++++YL I L + Sbjct: 1 MQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGTEV 59 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 + E+ + A +S S + + + S ++ + Sbjct: 60 PLLRFEVGSKPAARAHNNPVTASVSAPVAPVTRSAPMRPSWDNSPAQPELSYRSNVNPKH 119 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + Sbjct: 120 TFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMA 174 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 R+ N +VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF Sbjct: 175 RKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 234 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL Sbjct: 235 HTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL----- 289 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + E L L Sbjct: 290 MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 349 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEI Sbjct: 350 LALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEI 408 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 GDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 449 >gi|89101119|ref|ZP_01173955.1| chromosomal replication initiation protein [Bacillus sp. NRRL B-14911] gi|89084174|gb|EAR63339.1| chromosomal replication initiation protein [Bacillus sp. NRRL B-14911] Length = 425 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 153/449 (34%), Positives = 259/449 (57%), Gaps = 27/449 (6%) Query: 55 YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV 114 + +W + K HS+ +++ ++ P F + W++ RY + I+ + + GV+ ++ Sbjct: 1 FDTWLKSTKAHSLQGDLLIITAPNEFARDWLEERYSQLISGILYDITGEELGVKFII--- 57 Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 E+ P K + + + P+ + L+ ++ F TF+ GS NR Sbjct: 58 PQNQGEEEVDLPVPPKKGKKDDDQPELPLNM------------LNPKYTFDTFVIGSGNR 105 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI + P +VVYL++ Sbjct: 106 FAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYVQDHNPAAKVVYLSS 160 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQ 293 E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q EF H N+L + +KQ Sbjct: 161 EKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQ 220 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + + L+I Sbjct: 221 IVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRK-----KAKAEGLDIP 275 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIE 412 EV++++A + ++ REL+GA ++V S + A++A E L ++ + + K + I Sbjct: 276 NEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALRDIIPSSKPKVITIH 335 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQ+ V +HY++ D + +R ++V PRQ+AMYLS+ +T S P+IG FG RDHTTV Sbjct: 336 EIQKTVGEHYSVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDFSLPKIGEEFGGRDHTTV 395 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 +HA K+ K+L+TD L+K+++ L L+ Sbjct: 396 IHAHEKISKLLQTDPQLQKQLKELNELLK 424 >gi|116250144|ref|YP_765982.1| chromosomal replication initiation protein [Rhizobium leguminosarum bv. viciae 3841] gi|123384972|sp|Q1MMD6|DNAA_RHIL3 RecName: Full=Chromosomal replication initiator protein DnaA gi|115254792|emb|CAK05866.1| putative chromosomal replication initiator protein [Rhizobium leguminosarum bv. viciae 3841] Length = 482 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 307/480 (63%), Positives = 362/480 (75%), Gaps = 18/480 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 +F VS+RLK QVGPDVYASWF RLK HSV ++V LSVPT FLK+WI NRYL+ IT LF Sbjct: 6 LFERVSARLKAQVGPDVYASWFARLKLHSVSKSVVRLSVPTTFLKSWINNRYLDLITGLF 65 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI------- 150 Q E I +E+LVR+ + + +P S G+ Sbjct: 66 QAEDPEILKIEVLVRTATRHGTKALDEVVAPEPAAPTQMRRPTSAQPAGQAVQQAVSAVA 125 Query: 151 --------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 SP+FGSPLDSRF F TF+EGSSNRVAL AA++IAE G VR NPLFIH Sbjct: 126 AARPASFGSPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTIAEA---GQGAVRFNPLFIH 182 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 ++VGLGKTHLLQA+ANA+++ +LRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDL Sbjct: 183 STVGLGKTHLLQAVANAAVQNPRSLRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDL 242 Query: 263 LLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ Sbjct: 243 LIIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAI 302 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 DYEMR ILK RLA+++ EDP L I E+L HVAR VT SGREL+GAFNQLVFR Sbjct: 303 EFDAPDYEMRLEILKRRLAVARLEDPSLEIPAELLQHVARNVTASGRELEGAFNQLVFRR 362 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 SF P L+ E DELL+HLV +GE +++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PR Sbjct: 363 SFEPNLSIERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPR 422 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L EVELLKRLI+E Sbjct: 423 QIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDTKLSHEVELLKRLINE 482 >gi|145297125|ref|YP_001139966.1| chromosomal replication initiation protein [Aeromonas salmonicida subsp. salmonicida A449] gi|166201858|sp|A4SH46|DNAA_AERS4 RecName: Full=Chromosomal replication initiator protein DnaA gi|142849897|gb|ABO88218.1| chromosomal replication initiator protein DnaA [Aeromonas salmonicida subsp. salmonicida A449] Length = 456 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 147/467 (31%), Positives = 255/467 (54%), Gaps = 17/467 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL + + Sbjct: 4 SLWQQCLNRLQDELPSAEFSMWIRPLQA-ELSDNTLTLYAPNRFVLDWVRDKYLIRVNGI 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + G + P A + + + + N+ KS P S Sbjct: 63 INELCG-VDGPTLRFDIGNRP--HPVAIARAPARGAAPVNNLQKSWESKADAKPEPNHKS 119 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 + + F F+EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ Sbjct: 120 NTNVNYTFENFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAV 174 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA +R+ + +V+Y+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 GNAIKERKKDAKVIYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKER 234 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +I Sbjct: 235 SQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAI 294 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + ++ ++++ +EV +A+ + ++ REL+GA N+++ +F + + Sbjct: 295 L-----MRKADENQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAINIDFVR 349 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T Sbjct: 350 EALRDLLALQ-EKLVTIDNIQKTVAEYYKIKLADLLSKRRSRSVARPRQLAMALAKELTN 408 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG R+HTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 HSLPEIGDAFGGREHTTVLHACRKIEQLKEESHDIKEDYSNLIRTLS 455 >gi|52840257|ref|YP_094056.1| chromosomal replication initiation protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54292965|ref|YP_125380.1| chromosomal replication initiator protein DnaA [Legionella pneumophila str. Lens] gi|54295984|ref|YP_122353.1| chromosomal replication initiation protein [Legionella pneumophila str. Paris] gi|148358140|ref|YP_001249347.1| chromosomal replication initiator protein DnaA [Legionella pneumophila str. Corby] gi|296105498|ref|YP_003617198.1| chromosomal replication initiator protein DnaA [Legionella pneumophila 2300/99 Alcoy] gi|61212502|sp|Q5X0L8|DNAA_LEGPL RecName: Full=Chromosomal replication initiator protein DnaA gi|61212504|sp|Q5X990|DNAA_LEGPA RecName: Full=Chromosomal replication initiator protein DnaA gi|61212515|sp|Q5ZZK8|DNAA_LEGPH RecName: Full=Chromosomal replication initiator protein DnaA gi|166214678|sp|A5I9F1|DNAA_LEGPC RecName: Full=Chromosomal replication initiator protein DnaA gi|52627368|gb|AAU26109.1| chromosomal replication initiator protein DnaA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53749769|emb|CAH11149.1| Chromosomal replication initiator protein DnaA [Legionella pneumophila str. Paris] gi|53752797|emb|CAH14231.1| Chromosomal replication initiator protein DnaA [Legionella pneumophila str. Lens] gi|148279913|gb|ABQ54001.1| chromosomal replication initiator protein DnaA [Legionella pneumophila str. Corby] gi|295647399|gb|ADG23246.1| chromosomal replication initiator protein DnaA [Legionella pneumophila 2300/99 Alcoy] Length = 452 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 155/466 (33%), Positives = 258/466 (55%), Gaps = 23/466 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + L+++ + +W + L+ + + + L P F+ W++ + I +L + Sbjct: 6 WQKCLGLLQDEFSAQQFNTWLRPLQAY-MDEQRLILLAPNRFVVDWVRKHFFSRIEELIK 64 Query: 99 EEHSR-IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + I+ + I V S + +V+ A + I T+ S +P+ + S Sbjct: 65 QFSGDDIKAISIEVGSKPVEAVDTPAET--------IVTSSSTAPLKSAPKKAVDYKSSH 116 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ +FVF +F+EG+SN++A A+ +AE Y NPLFI+ VGLGKTHL+ AI Sbjct: 117 LNKKFVFDSFVEGNSNQLARAASMQVAERPGDAY-----NPLFIYGGVGLGKTHLMHAIG 171 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N+ +K P +V+YL +E F+ A++ N K R+++ LLIDD+QF GK Sbjct: 172 NSILKNNPEAKVLYLHSERFVADMVKALQTNSINEFKRFYRSLNALLIDDIQFFAGKDRS 231 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G++V + + E R +IL Sbjct: 232 QEEFFHTFNALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVAIL 291 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 IS+ E + + EV +A+ + ++ REL+GA +++ F +T E E Sbjct: 292 -----ISKAEQSNIELPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPITIEFVHE 346 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ K + IE+IQ+ VA++Y + DLLS RR R++ RPRQ+AM LSK +T Sbjct: 347 ALRDLLALQ-DKLVTIENIQKTVAEYYKVKVADLLSKRRSRSIARPRQMAMALSKELTNH 405 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG +DHTTV+HA RKV+++++ D ++ + L R++S Sbjct: 406 SLPEIGDHFGGKDHTTVIHACRKVKELIQDDSDFAEDYKNLMRILS 451 >gi|161486853|ref|NP_780810.2| chromosomal replication initiation protein [Clostridium tetani E88] Length = 454 Score = 501 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 263/474 (55%), Gaps = 23/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + I+ + +K ++ + +W + ++ + H+ V LSVP +F + + +RY Sbjct: 1 MSTNIKEIWDKTLNIIKGELTEVSFNTWIKSIEPIKIEHDTVFLSVPNDFTRGILDSRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ +E + S S N N+ + Sbjct: 61 DLIINALKLITSKKYNIEFFI-----------TSEESAFTTIKENPNLKIHNNEINNIVT 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 110 SDGMSAMLNPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 164 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ N++VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF Sbjct: 165 HLMHAIGHYILQNNSNVKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQF 224 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 225 IAGKERTQEEFFHTFNALHEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LNI EV++++A + ++ REL+GA ++V S + Sbjct: 285 ETRMAILKK-----KADVEHLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEI 339 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ E+ ++ IE IQ +V+ ++N+ D S+RR R V PRQ+AMYL Sbjct: 340 SVDLASEALKDIISSKESNQVTIELIQDIVSSYFNLRVEDFKSSRRTRNVAFPRQIAMYL 399 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IG FG RDHTTV+H K+ L+ D +L+K V L I++ Sbjct: 400 CRKLTDNSLPKIGEEFGGRDHTTVIHGYEKISTALKKDDSLQKTVNELTSKINQ 453 >gi|218291094|ref|ZP_03495117.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius LAA1] gi|218238979|gb|EED06186.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius LAA1] Length = 454 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 143/479 (29%), Positives = 252/479 (52%), Gaps = 33/479 (6%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKA 83 + ++ +S++ V ++++V Y++WF+ + V++S P+ F++ Sbjct: 1 MMSTKVDPTYDSLWNQVLKMVQDKVSGPTYSTWFEDTHIVQIDESDQTVYISAPSAFVRN 60 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 W+ Y + L R V + E +P++ + ++P Sbjct: 61 WLSEHYTSLVETLMMTIMDREYRVRFI--------TEDDVQAPAVI--------VRRTPE 104 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + + + + L+ R+ F +F+ G+ NR A A ++AE ++ Y NPLFI+ Sbjct: 105 PVSPEDDT---ETNLNPRYTFDSFVIGAGNRFAHAACLAVAERPANAY-----NPLFIYG 156 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+ AI + + PN +V Y+++E F F +AIRD + + R +D+L Sbjct: 157 GVGLGKTHLMHAIGHYVRQHYPNFKVSYISSERFTNEFIAAIRDKNPDSFRARYRTVDVL 216 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF+ K Q EF H NSL + KQ+V ++DRPP E+ +L+ R+RSR + G+ Sbjct: 217 LIDDIQFIANKEQTQEEFFHTFNSLHEVGKQIVISSDRPPREIPTLEDRLRSRFEWGLIT 276 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D E R +IL+ + + L++ +VL +A + ++ REL+GA +++ Sbjct: 277 DIQPPDLETRIAILQR-----KAKADGLDVPVDVLAFIANQIDSNIRELEGALTRVIAYS 331 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 S L+ +A+E L L++ + + + +Q++VA HY + +DL +R R + P Sbjct: 332 SLVKEDLSVALAEEALKDLIHPNRPRAVTVSHVQKVVADHYGLKVDDLKGKKRTRNIAFP 391 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL++ +T S P IG FG RDHTTV+HA +V + + D L+ ++ L + I Sbjct: 392 RQIAMYLTRELTDLSLPRIGEAFGGRDHTTVMHACERVHEEMMRDDELRATIDRLSQAI 450 >gi|222147316|ref|YP_002548273.1| chromosomal replication initiation protein [Agrobacterium vitis S4] gi|221734306|gb|ACM35269.1| chromosomal replication initiator protein DnaA [Agrobacterium vitis S4] Length = 524 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 307/527 (58%), Positives = 375/527 (71%), Gaps = 28/527 (5%) Query: 1 MQLREVAACIQENDVEI----------AEKTPNVDVDKRCL--EVNCESIFTIVSSRLKN 48 MQ++ V A + E A PN VD EV +++F S+RL+ Sbjct: 1 MQMKMVTASAAASGDEARTIDQAVSPDATGGPNAVVDDTVAGDEVRYDALFERFSARLRA 60 Query: 49 QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVE 108 QVGPDV+ASWF RLK HS +++ LSVPT FLK+WI NRYL+ IT +FQ E + I +E Sbjct: 61 QVGPDVFASWFGRLKLHSSSKSVIRLSVPTTFLKSWINNRYLDLITSIFQAEDASILKIE 120 Query: 109 ILVRSVAL----PSVEKTASSPSITKLSPINTNIS---------KSPIILGKQTISPVFG 155 ILVRS + P VE A PS++ S + P+FG Sbjct: 121 ILVRSASRNSRAPVVEDRAVEPSLSSSQKRQAPQSIGQMAPAIANAAAPQRAPVQGPLFG 180 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 SPLDSR+ F F+EG+SNRVA+ AA++IAE G VR NPLFIH+SVGLGKTHLLQA Sbjct: 181 SPLDSRYTFDGFVEGASNRVAVAAAKTIAEA---GAGAVRFNPLFIHSSVGLGKTHLLQA 237 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 IANA+I RVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDLL+IDDMQFLQGK Sbjct: 238 IANAAIHSPRAPRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQFLQGKT 297 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQGGV++ + DY+MR + Sbjct: 298 IQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDQRVRSRLQGGVAIEMEAPDYDMRLDM 357 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 LK RLA+++KEDP L I E++ HVAR V +SGR+L+GAFNQL+FR SF +T E DE Sbjct: 358 LKTRLALAKKEDPSLEIPAEIIAHVARNVASSGRDLEGAFNQLLFRRSFEANMTIERVDE 417 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 LL+HLV E K++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK +TPR Sbjct: 418 LLAHLVGAAEQKRVRIEDIQRVVARHYNVSRQELVSNRRTRVIVKPRQIAMYLSKTLTPR 477 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 SFPEIGRRFG RDHTTVLHAVRK+E+++ D L +E+ELL+RLI+E Sbjct: 478 SFPEIGRRFGGRDHTTVLHAVRKIEELISGDQKLSQEIELLRRLINE 524 >gi|299820842|ref|ZP_07052731.1| DNA-directed DNA replication initiator protein [Listeria grayi DSM 20601] gi|299817863|gb|EFI85098.1| DNA-directed DNA replication initiator protein [Listeria grayi DSM 20601] Length = 456 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 252/470 (53%), Gaps = 29/470 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E+I+ +K + Y +W + HS+ N +S P NF++ W++ Y + Sbjct: 13 QSIEAIWQEALQVVKKNMSKPSYDTWMKSTTAHSLEGNHFIISAPNNFVRDWLEKSYTQF 72 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + QE V+ + E + + N Sbjct: 73 IATILQEITGNTYDVQF-IDGEQEEKFEYVTPKKHLDDIEENPENSKHM----------- 120 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 121 -----LNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 170 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + + + N V+YL++E F F S+IRDN + + RN+D+LLIDD+QFL Sbjct: 171 MHAVGHYVQQHKENANVMYLSSEKFTNEFISSIRDNKSEEFRAKYRNVDVLLIDDIQFLA 230 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 231 GKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 290 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + + L+I EV++++A + ++ REL+GA ++V S +TA Sbjct: 291 RIAILRK-----KAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA 345 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L ++ + + I+ IQ V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 346 GLAAEALKDIIPNNKPTVITIKAIQAAVGEYYHVRLEDFKAKKRTKSIAYPRQIAMYLSR 405 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ +++++D+ LK ++ +++ + Sbjct: 406 ELTDASLPKIGDEFGGRDHTTVIHAHEKITQLIKSDMNLKNDIAEIEKQL 455 >gi|119471658|ref|ZP_01614043.1| DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes [Alteromonadales bacterium TW-7] gi|119445437|gb|EAW26724.1| DNA replication initiator protein, transcriptional regulator of replication and other genes; binds DNA at DnaA boxes [Alteromonadales bacterium TW-7] Length = 462 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 141/470 (30%), Positives = 249/470 (52%), Gaps = 17/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ L++++ ++ W + L+ S + + + P F+ W++ +YL I +L Sbjct: 4 SVWQSCLYVLQDELPSQQFSMWVRPLQAES-TEDTLTIYAPNRFVLDWVREKYLNRINEL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E ++ + + V + + + + + Sbjct: 63 LVEICGDEAPELRFDVGSKPLLNTQVAPATEAQPAPSIQASAKQQPREQKPVVEPAPKSG 122 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + S + + F +F+EG SN++A AA +A+ NP+FI+ GLGKTHLL Sbjct: 123 YKSNIKENYTFDSFVEGKSNQLAKAAATQVADNPGSA-----FNPVFIYGGTGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +P+ ++VY+ +E F+ A+++N K R++D L+IDD+QF Sbjct: 178 HAVGNGIMANKPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFAN 237 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E R Sbjct: 238 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETR 297 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + + K+N+ EV +A+ + ++ REL+GA N+++ +F ++ + Sbjct: 298 VAIL-----MKKAQQSKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISID 352 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQR VA++Y I +DLLS RR R++ RPRQVAM LSK Sbjct: 353 FVKEALRDLLALQ-DKLVTIDNIQRTVAEYYRIRVSDLLSKRRSRSIARPRQVAMALSKE 411 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK++ + + +K++ + L R +S Sbjct: 412 LTNHSLPEIGDAFGGRDHTTVLHACRKIKSLRDESHEIKEDYQNLIRTLS 461 >gi|78042923|ref|YP_361492.1| chromosomal replication initiation protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995038|gb|ABB13937.1| chromosomal replication initiator protein DnaA [Carboxydothermus hydrogenoformans Z-2901] Length = 454 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 151/475 (31%), Positives = 252/475 (53%), Gaps = 24/475 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 L+ E ++ V LKN V + W + ++ L N + + VP F K W++ Y Sbjct: 1 MLKNPVEELWEQVMEVLKNHVNKPSWDMWIKSIRPLGFLENTILVEVPNKFAKDWLEEHY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I + + +++V + S + S T K+ + Sbjct: 61 ASLIKHILNLITNEDINFKLVV------------PNESAIEDSEGKTKSKKNSPKKPSKF 108 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L+ ++ F TF+ G+SNR A A ++AE + Y NPLFI+ VGLGK Sbjct: 109 LEEGIFFTLNPKYTFETFVVGNSNRFAHAACLAVAESPAEAY-----NPLFIYGGVGLGK 163 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + +K +P ++V Y+T E F ++I+D+ ++ R+ID+LLIDD+Q Sbjct: 164 THLMHAIGHYILKNKPEMKVAYVTTEKFTNDLINSIKDDTTEEFRNKYRSIDVLLIDDIQ 223 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL+ K Q EF H N+L ++ KQ+V ++DR P EL +L+ R+RSR + G+ + D Sbjct: 224 FLEKKERTQEEFFHTFNALYEANKQIVISSDRTPKELSTLEDRLRSRFEWGLITDIQPPD 283 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL+ + + L++++ VL +A + ++ REL+GA ++V Sbjct: 284 LETRIAILRK-----KAQLDNLHVDDAVLNFIANEIVSNIRELEGALIRVVAYAGLHGEP 338 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T ++A + L L+ + K + I IQ++VA Y ++ +DL + +R ++V PRQVAMY Sbjct: 339 ITVDLAAKALKDLLPSNHVKPITIPLIQQVVANFYGLTVDDLKAKKRTKSVAFPRQVAMY 398 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG RDHTTV+HA K+++ L++D LK + L I + Sbjct: 399 LCRELTDASLPKIGEEFGGRDHTTVIHAHEKIQQDLQSDPNLKTVIRQLTEQIHK 453 >gi|254520696|ref|ZP_05132752.1| chromosomal replication initiator protein DnaA [Clostridium sp. 7_2_43FAA] gi|226914445|gb|EEH99646.1| chromosomal replication initiator protein DnaA [Clostridium sp. 7_2_43FAA] Length = 451 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 158/474 (33%), Positives = 269/474 (56%), Gaps = 26/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +S++ + +K ++ + +W + + S+ NI+ +SVP +F + ++ RY Sbjct: 1 MNNDLKSLWEKTLNIIKGEMSEVSFNTWIKSCEPISISSNIIRISVPNSFTQDILEKRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + S++ VE +V S + EK I G T+ Sbjct: 61 DLVVNSIEAACSKVYTVEFMVASDIQEAEEKEEKKSKIDD--------------RGSITV 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F++F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 107 NDEMSSLLNPKYTFASFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ N +VVY+++E F +AIRD+ ++ RN+D+LLIDD+QF Sbjct: 162 HLMHAIGHYVLQNNSNAKVVYVSSEKFTNELINAIRDDKNEEFRNKYRNVDILLIDDIQF 221 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 222 IAGKERTQEEFFHTFNALHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + KLN+ EV++++A + ++ REL+GA ++V S + Sbjct: 282 ETRMAILKK-----KADVEKLNVANEVMVYIATKIKSNIRELEGALIRIVAYSSLTNRPI 336 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L +++ + + + I+ IQ +VA ++N+ DL S RR R V PRQ+AMYL Sbjct: 337 TVELASEALKDIISNKQNRNVTIDVIQDVVAGYFNLRIEDLKSQRRTRNVAYPRQIAMYL 396 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ L TD +L+ V + + +++ Sbjct: 397 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISDSLNTDESLQHTVNDITKKLTQ 450 >gi|270158402|ref|ZP_06187059.1| chromosomal replication initiator protein DnaA [Legionella longbeachae D-4968] gi|289163354|ref|YP_003453492.1| Chromosomal replication initiator protein DnaA [Legionella longbeachae NSW150] gi|269990427|gb|EEZ96681.1| chromosomal replication initiator protein DnaA [Legionella longbeachae D-4968] gi|288856527|emb|CBJ10322.1| Chromosomal replication initiator protein DnaA [Legionella longbeachae NSW150] Length = 458 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 158/468 (33%), Positives = 264/468 (56%), Gaps = 17/468 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ L+++ + +W + L+ H+ + L P F+ W+K + I +L Sbjct: 4 SVWQKCLGLLQDEYSAQQFNTWLRPLQAHT-DEQRLILFAPNRFVVDWVKKHFFSRIEEL 62 Query: 97 FQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + +I+ V I + S + ++S+ SI +P+N + + + + + Sbjct: 63 INQLSGDQIKSVSIEIGSKTSNNDSDSSSTGSIR--TPVNVSANSTEVKATPKKAVDYKS 120 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ +FVF +F+EG+SN++A A+ +AE Y NPLFI+ VGLGKTHL+ A Sbjct: 121 SHLNKKFVFESFVEGNSNQLARAASMQVAERPGDAY-----NPLFIYGGVGLGKTHLMHA 175 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N+ +K P+ +++YL +E F+ AI+ N K R+++ LLIDD+QF GK Sbjct: 176 IGNSILKNNPDAKILYLHSERFVADMVKAIQTNSINEFKRFYRSLNALLIDDIQFFAGKD 235 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G++V + + E R + Sbjct: 236 RSQEEFFHTFNALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVA 295 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL IS+ E +++ EV +A+ + ++ REL+GA +++ F +T E Sbjct: 296 IL-----ISKAEQSNIDLPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPITIEFV 350 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ K + IE+IQ+ VA++Y + DLLS RR R++ RPRQ+AM LSK +T Sbjct: 351 HEALRDLLALQ-DKLVTIENIQKTVAEYYKVKVADLLSKRRSRSIARPRQMAMALSKELT 409 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTV+HA RKV+++++ D ++ + L R++S Sbjct: 410 NHSLPEIGDHFGGRDHTTVIHACRKVKELIQDDSDFAEDYKNLMRILS 457 >gi|304414287|ref|ZP_07395655.1| chromosomal replication initiator protein and DNA-binding transcriptional dual regulator [Candidatus Regiella insecticola LSR1] gi|304283501|gb|EFL91897.1| chromosomal replication initiator protein and DNA-binding transcriptional dual regulator [Candidatus Regiella insecticola LSR1] Length = 466 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 147/477 (30%), Positives = 251/477 (52%), Gaps = 18/477 (3%) Query: 31 LEVNCE-SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E S++ +RL+ ++ ++ W + L+ + N + L P F+ W++++Y Sbjct: 1 MEFTVSLSLWQQCLARLQEELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKY 59 Query: 90 LETITKLFQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 L I L + + E+ + V + SS + + + + Sbjct: 60 LNNINGLLNDFCGENIPLLRFEVGNKPVIQTTNPSAISSVGVPIVPITHNVTGRLGWDSA 119 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + S ++++ F F+EG SN++A AA+ +A+ Y NPLF++ G Sbjct: 120 LTQPQRDYRSNINTKHSFDNFVEGKSNQLARAAARQVADNPGKAY-----NPLFLYGCTG 174 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A+ N I + +VVY+ +E F+ A+++N K R++D LLID Sbjct: 175 LGKTHLLHAVGNGIIANKSKAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSLDALLID 234 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ +DR P E+ + R++SR G++V + Sbjct: 235 DIQFFSNKERSQEEFFHTFNTLLEGNQQIILTSDRYPKEINGVADRLKSRFGWGLTVAID 294 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 295 PPELETRVAIL-----MKKADENDIVLPNEVAFFIAKRLRSNVRELEGALNRVIANANFT 349 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + E L L+ K + I++IQR VA++Y + DLLS RR R+V RPRQ+ Sbjct: 350 GRAITIDFVREALCDLLALQ-EKLVTIDNIQRTVAEYYKVKVTDLLSKRRSRSVARPRQM 408 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM ++K +T S PEIG FG RDHTTVLHA RK+E++ E + K++ L R +S Sbjct: 409 AMAMAKELTNHSLPEIGNAFGGRDHTTVLHACRKIEQLREENHHFKEDFLNLIRTLS 465 >gi|288554606|ref|YP_003426541.1| chromosomal replication initiation protein [Bacillus pseudofirmus OF4] gi|288545766|gb|ADC49649.1| chromosomal replication initiation protein [Bacillus pseudofirmus OF4] Length = 450 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 155/472 (32%), Positives = 262/472 (55%), Gaps = 26/472 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N ++ + ++ +V Y +W + K + + ++++ ++ P F + W++ Y Sbjct: 1 ME-NIHDLWERALAEMEKKVSKPSYETWLKSTKANDIQNDVITITAPNEFARDWLEEHYA 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + ++ +E K P++ N S+ Sbjct: 60 GLTSDTIEHLTGARLTPRFVI---PQNELEDDFLIEPPKKKKPVSDNGSQ---------- 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 107 NNGTKTMLNDKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + PN +VVYL++E F F ++IRDN A+N ++ RN+D+LLIDD+QF Sbjct: 162 HLMHAIGHYVMDHNPNAKVVYLSSEKFTNEFINSIRDNRAVNFRNKYRNVDVLLIDDIQF 221 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 222 LAGKEQTQEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDL 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I EV++++A + T+ REL+GA ++V S + Sbjct: 282 ETRIAILRK-----KAKAENLDIPNEVMLYIANQIDTNIRELEGALIRVVAYSSLINQDM 336 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A++A E L ++ + K + I DIQ++V + Y++ D + +R ++V PRQ+AMYL Sbjct: 337 NADLAAEALKDIIPNSKPKVLTITDIQKLVGEFYHVKLEDFKAKKRTKSVAYPRQIAMYL 396 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ MT S P+IG FG RDHTTV+HA K+ KML TD L+++V+ + + Sbjct: 397 SREMTDASLPKIGSEFGGRDHTTVIHAHEKISKMLTTDQELQQKVQEIMEQL 448 >gi|59710616|ref|YP_203392.1| chromosomal replication initiation protein [Vibrio fischeri ES114] gi|71151809|sp|Q5E8Z2|DNAA_VIBF1 RecName: Full=Chromosomal replication initiator protein DnaA gi|59478717|gb|AAW84504.1| chromosomal replication initiator protein DnaA [Vibrio fischeri ES114] Length = 469 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 153/479 (31%), Positives = 259/479 (54%), Gaps = 24/479 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQRLQEELPSAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 L E E+ + V+ P+V K ++ S ++ + ++ Sbjct: 61 SLLNEFCGNDIPTLRFEVGSKPVSAPAVPKQTAADVAAATSAPAQLQARQSVHKPWESEG 120 Query: 152 P-------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AGPVAADLNHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGTAY-----NPLFLYGG 175 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL A+ NA + +P+ RVVY+ +E F+ A+++N K R++D LL Sbjct: 176 TGLGKTHLLHAVGNAIVDSKPDARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALL 235 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V Sbjct: 236 IDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVA 295 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ + Sbjct: 296 IEPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANAN 350 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPR Sbjct: 351 FTGRAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADLLSKRRSRSVARPR 409 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM LSK +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 410 QLAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYSNLIRTLS 468 >gi|254496740|ref|ZP_05109599.1| chromosomal replication initiator protein DnaA [Legionella drancourtii LLAP12] gi|254354035|gb|EET12711.1| chromosomal replication initiator protein DnaA [Legionella drancourtii LLAP12] Length = 458 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 153/468 (32%), Positives = 255/468 (54%), Gaps = 17/468 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ L+++ + +W + L+ H+ + L P F+ W+K + I +L Sbjct: 4 AVWQKCLGLLQDEYSAQQFNTWLRPLQAHT-DEQRLVLLAPNRFVVDWVKKHFFSRIEEL 62 Query: 97 FQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 ++ I+ + I + S A S T + P S + K+ + Sbjct: 63 IKQFSGDEIKSISIEIGSKASES-GSTGTGPVAAGEKSTPAADSMLAKSVPKKAVD-YKS 120 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ +F+F +F+EG+SN++A A+ +AE Y NPLFI+ VGLGKTHL+ A Sbjct: 121 SHLNKKFLFESFVEGNSNQLARAASMQVAERPGDAY-----NPLFIYGGVGLGKTHLMHA 175 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N ++ P +++YL +E F+ A++ N K R+++ LLIDD+QF GK Sbjct: 176 IGNEILRNNPEAKILYLHSERFVADMVKALQTNSINEFKRFYRSLNALLIDDIQFFAGKD 235 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G++V + + E R + Sbjct: 236 RSQEEFFHTFNALLEGQQQIILTSDRYPKEIEGMEERLKSRFGWGLTVAVEPPELETRVA 295 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL IS+ E + + EV +A+ + ++ REL+GA +++ F +T E Sbjct: 296 IL-----ISKAEQSNIELPYEVAFFIAKRIRSNVRELEGALRRVIANAHFTGKPITIEFV 350 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ K + IE+IQ+ VA++Y + D+LS RR R++ RPRQ+AM LSK +T Sbjct: 351 HEALRDLLALQ-DKLVTIENIQKTVAEYYKVKVADILSKRRSRSIARPRQMAMALSKELT 409 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTV+HA RKV+++++ D ++ + L R++S Sbjct: 410 NHSLPEIGDHFGGRDHTTVIHACRKVKELVQDDSDFAEDYKNLMRILS 457 >gi|159184258|ref|NP_353356.2| chromosomal replication initiation protein [Agrobacterium tumefaciens str. C58] gi|159139585|gb|AAK86141.2| chromosomal replication initiator protein DnaA [Agrobacterium tumefaciens str. C58] Length = 520 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 301/526 (57%), Positives = 375/526 (71%), Gaps = 33/526 (6%) Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLE-------VNCESIFTIVSSRLKNQVGPD 53 MQL + + D + P D C E + +++F S+RLK QVGP+ Sbjct: 1 MQLNLAMGAVADGD-----RAPKA-CDAACSEAAGDKSAMMHDALFERFSARLKAQVGPE 54 Query: 54 VYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 VYASWF RLK H+V ++V +VPT FLK+WI NRY++ IT L Q E + VEILVRS Sbjct: 55 VYASWFARLKLHTVSKSVVRFTVPTTFLKSWINNRYMDLITSLVQSEDPDVLKVEILVRS 114 Query: 114 VALP--SVEKTASSPSITKLSPINTNISKSPIILGKQTIS---------------PVFGS 156 + P + + + ++ N S P + P+FGS Sbjct: 115 ASRPVRPAQTEERAQPVQEVGAAPRNKSFIPSQSATAPAAQPMAAQATLRQGGSGPLFGS 174 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD+RF F TF+EGSSNRVAL AA++IAE G VR NPLFIHA VGLGKTHLLQAI Sbjct: 175 PLDTRFTFDTFVEGSSNRVALAAAKTIAEA---GAGAVRFNPLFIHAGVGLGKTHLLQAI 231 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 ANA+I N RVVYLTAEYFMWRFA+AIRDN AL LKD+LRNIDLL+IDDMQFLQGK+I Sbjct: 232 ANAAIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKDTLRNIDLLVIDDMQFLQGKMI 291 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 QHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRLQGG+++ + DY+MR+ +L Sbjct: 292 QHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGMAIEIEGPDYDMRYEML 351 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 R+ ++++DP I++E+L HVA++VT SGREL+GAFNQL+FR SF P L+ + DEL Sbjct: 352 NRRMGSARQDDPSFEISDEILTHVAKSVTASGRELEGAFNQLMFRRSFEPNLSVDRVDEL 411 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LSHLV +GE K++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYL+K++TPRS Sbjct: 412 LSHLVGSGEAKRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLAKMLTPRS 471 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FPEIGRRFG RDHTTVLHAVRK+E ++ D L EVELLKRLI+E Sbjct: 472 FPEIGRRFGGRDHTTVLHAVRKIEDLISGDTKLGHEVELLKRLINE 517 >gi|258510021|ref|YP_003183455.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476747|gb|ACV57066.1| chromosomal replication initiator protein DnaA [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 454 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 142/479 (29%), Positives = 244/479 (50%), Gaps = 33/479 (6%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKA 83 + ++ ++++ V ++++V Y++WF+ + + V++S P+ F++ Sbjct: 1 MMSTKVDPTYDALWNQVLQMVQDKVSGPTYSTWFEDTHIVRIDESEQTVYISAPSTFVRN 60 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 W+ Y + L R V + +P Sbjct: 61 WLSEHYTSLVETLMMTLMDREYRVRFITEDDVQAPAVIVRRAPEPV-------------- 106 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 T + L+ R+ F +F+ G+ NR A A ++AE ++ Y NPLFI+ Sbjct: 107 -----TAEEDTETNLNPRYTFDSFVIGAGNRFAHAACLAVAERPANAY-----NPLFIYG 156 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+ AI + + PN +V Y+++E F F +AIRD + + R +D+L Sbjct: 157 GVGLGKTHLMHAIGHYVRQHYPNFKVSYISSERFTNEFIAAIRDKNPDSFRARYRTVDVL 216 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF+ K Q EF H NSL + KQ+V ++DRPP E+ +L+ R+RSR + G+ Sbjct: 217 LIDDIQFIANKEQTQEEFFHTFNSLHEVGKQIVISSDRPPREIPTLEDRLRSRFEWGLIT 276 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D E R +IL+ + + L++ +VL +A + ++ REL+GA +++ Sbjct: 277 DIQPPDLETRIAILQR-----KAKADGLDVPVDVLAFIANQIDSNIRELEGALTRVIAYS 331 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 S L+ +A+E L L++ + + + +Q++VA HY + +DL +R R + P Sbjct: 332 SLVKEDLSVALAEEALKDLIHPNRPRAVTVNHVQKVVADHYGLKVDDLKGKKRTRNIAFP 391 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL++ +T S P IG FG RDHTTV+HA +V + + D L+ +E L + I Sbjct: 392 RQIAMYLTRELTDLSLPRIGEAFGGRDHTTVMHACERVHEEMMRDDELRATIERLSQAI 450 >gi|121998017|ref|YP_001002804.1| chromosomal replication initiation protein [Halorhodospira halophila SL1] gi|166214674|sp|A1WWE0|DNAA_HALHL RecName: Full=Chromosomal replication initiator protein DnaA gi|121589422|gb|ABM62002.1| chromosomal replication initiator protein DnaA [Halorhodospira halophila SL1] Length = 449 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 153/469 (32%), Positives = 250/469 (53%), Gaps = 26/469 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +S+++ +L+ ++ +W + L+ H + + + L P F+ W+++ + I + Sbjct: 3 DSLWSACLQQLEREIPEQQLNTWIRPLQAH-LEGDALRLYAPNRFVLDWVRDNFSARIGE 61 Query: 96 LFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L E VE+ + S P + A+ + + ++ + P+ Sbjct: 62 LLAEIRPDEHLRVELEIGSPPTPDQREAATGATRAAPAQRSSEPRQRPV----------- 110 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F +F+EG SN++A A+ +A+ Y NPLF++ VGLGKTHL+ Sbjct: 111 DSNLNPGFTFDSFVEGKSNQLARAASMQVADNPGGAY-----NPLFLYGGVGLGKTHLMH 165 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA +P RV+YL +E F+ A++ N K RN+D LLIDD+QF GK Sbjct: 166 AVGNAIRTARPEARVLYLHSERFVAEMVKALQHNAINEFKRHYRNLDALLIDDIQFFAGK 225 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+S +QV+ DR P E+ L+ R++SR G++V + + E R Sbjct: 226 ERSQEEFFHTFNALLESEQQVIMTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELETRV 285 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +ILK S+ +++ +EV VA+ + ++ REL+GA ++ F + + Sbjct: 286 AILK-----SKAIRDGVDLPDEVAFFVAKRLRSNVRELEGALRRITANAQFTGRAIDVDF 340 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L+ K + I++IQ+ VA +Y I DLLS RR R++ RPR +AM L+K + Sbjct: 341 AKEALRDLLALQ-DKLVTIDNIQKTVAAYYKIRVGDLLSKRRSRSITRPRHMAMVLAKEL 399 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDH+TVLHA R ++ ++E D L ++ + L R +S Sbjct: 400 TSHSLPEIGDAFGGRDHSTVLHACRNIKSLIEDDARLAEDYDNLLRTLS 448 >gi|253681350|ref|ZP_04862148.1| chromosomal replication initiator protein DnaA [Clostridium botulinum D str. 1873] gi|253562588|gb|EES92039.1| chromosomal replication initiator protein DnaA [Clostridium botulinum D str. 1873] Length = 449 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 266/473 (56%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E +++ + +K ++ + +W + + S+ N + L VP +F + +++RY Sbjct: 1 MNAQLEQLWSKTLNIIKGELTEVSFNTWIKSISPISIDENTIKLQVPNDFTRGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ ++ + S E+ ++ + NI I Sbjct: 61 DLIINAIKLITSKKYNIDFSITS------EEILNNNLKNTFKSNDENI----------II 104 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 105 NDEMTSILNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ PN +V Y+++E F ++I+D+ ++ RN+D+LLIDD+QF Sbjct: 160 HLMHAIGHYILQNTPNAKVAYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 220 IAGKERTQEEFFHTFNALYEADKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LNI EV++++A + ++ REL+GA ++V S + Sbjct: 280 ETRIAILKK-----KADVENLNIPNEVMVYIATKIKSNIRELEGALIRIVAYSSLTNREV 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ + K++ I+ IQ +V +YN+ DL S+RR R + PRQ+AMYL Sbjct: 335 SVDLAAEALKDIISSEQNKQVTIDLIQDIVCSYYNLRIQDLKSSRRTRNIAFPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ +L+ D +L+ + L + I+ Sbjct: 395 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNILKKDESLRNVINDLNKKIT 447 >gi|225181147|ref|ZP_03734593.1| chromosomal replication initiator protein DnaA [Dethiobacter alkaliphilus AHT 1] gi|225168116|gb|EEG76921.1| chromosomal replication initiator protein DnaA [Dethiobacter alkaliphilus AHT 1] Length = 454 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 153/475 (32%), Positives = 263/475 (55%), Gaps = 28/475 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E I+ ++ ++ + +W + + S+ + + +SVP +F K W++ RY Sbjct: 1 MEQELLEIWQATLDKISEKMSKPSFETWLKTTRPVSLSDDTLVISVPNDFTKDWLQGRYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E IT+ Q+ ++ V + +P I + +T+ K KQ Sbjct: 61 EMITETLQDVSNKNYHVHFI--------------TPRINEDETFDTSGEKETAPRLKQVE 106 Query: 151 SPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P S L+ ++ F TF+ G+SNR A A+ +++E + Y NPLFI+ VGLGK Sbjct: 107 EPKLSSSWLNPKYTFDTFVIGNSNRFAHAASLAVSEAPARAY-----NPLFIYGGVGLGK 161 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + ++ P+ RV+Y+++E F F ++IRDN ++ ++ RNID+LLIDD+Q Sbjct: 162 THLMHAIGHHVLENIPSYRVLYISSEKFTNEFINSIRDNKTVDFRNKYRNIDVLLIDDIQ 221 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 222 FLAGKEQTQEEFFHTFNALHENNKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQSPD 281 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL+ + K+ + +V++++A + T+ REL+GAF +++ S Sbjct: 282 LETRIAILRK-----KAHSEKITVANDVMLYIANNIVTNIRELEGAFIRVIAYSSLTNRN 336 Query: 388 LTAEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+E L ++ K + IE IQ+ +H+ + +L + +R R V PRQVAM Sbjct: 337 IDVSLAEEALQGILSQKNRPKFITIERIQKETCEHFALKPEELKAKKRTRNVALPRQVAM 396 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YLS+ +T S P+IG FG RDHTTV+HA +K+ + + + L+ +E + I+ Sbjct: 397 YLSRELTDASLPKIGEEFGGRDHTTVMHAHKKILQDMRNNNELRGTIEQIIEKIN 451 >gi|332533700|ref|ZP_08409559.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] gi|332036864|gb|EGI73325.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas haloplanktis ANT/505] Length = 460 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 143/468 (30%), Positives = 250/468 (53%), Gaps = 15/468 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ L++++ ++ W + L+ S + + + P F+ W++ +YL I +L Sbjct: 4 SVWQSCLYVLQDELPSQQFSMWVRPLQAES-TEDTLTIYAPNRFVLDWVREKYLNRINEL 62 Query: 97 FQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E + V S L + + + + + + + + Sbjct: 63 LVEICGVEAPKLRFDVGSKPLLNAQAAPVIETQSAPQASTKQQPREQKPVVEPAPKSGYK 122 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S + + F +F+EG SN++A AA +A+ NP+FI+ GLGKTHLL A Sbjct: 123 SNIKENYTFDSFVEGKSNQLAKAAATQVADNPGSA-----FNPVFIYGGTGLGKTHLLHA 177 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N + +P+ ++VY+ +E F+ A+++N K R++D L+IDD+QF K Sbjct: 178 VGNGIMANKPDAKIVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALMIDDIQFFANKE 237 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E R + Sbjct: 238 RSQEEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETRVA 297 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + K+N+ EV +A+ + ++ REL+GA N+++ +F ++ + Sbjct: 298 IL-----MKKAQQSKINLPHEVAFFIAKKLRSNVRELEGALNRVIANANFTGRPISIDFV 352 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ K + I++IQR VA++Y I +DLLS RR R++ RPRQVAM LSK +T Sbjct: 353 KEALRDLLALQ-DKLVTIDNIQRTVAEYYRIRVSDLLSKRRSRSIARPRQVAMALSKELT 411 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK++ + + +K++ + L R +S Sbjct: 412 NHSLPEIGDAFGGRDHTTVLHACRKIKSLRDESHEIKEDYQNLIRTLS 459 >gi|322381372|ref|ZP_08055375.1| chromosomal replication initiation-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154948|gb|EFX47219.1| chromosomal replication initiation-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 441 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 145/461 (31%), Positives = 245/461 (53%), Gaps = 26/461 (5%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 S ++ ++ + +W + + V + P NF K W+++RY + I+ E Sbjct: 2 LSIIQTKLSKPSFDTWLKSTRATVFTDTYVVICAPNNFAKEWLESRYAKMISSTIYEFLG 61 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 + ++ +V S + P I K + + + + ++SR+ Sbjct: 62 KQVEIKFIVESEEDQVNPVPEAVPDIPKGPALGQEEN--------------YSNMMNSRY 107 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G NR A A+ ++AE + Y NPLF++ VGLGKTHL+ AI + ++ Sbjct: 108 TFDTFVIGQGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKTHLMHAIGHYVLE 162 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFC 281 P RV+Y+++E F F +A+RDN + ++ R ID+LLIDD+QF+ GK Q EF Sbjct: 163 HNPEARVLYISSEKFTNEFINAVRDNRGEDFRNKYRTIDVLLIDDIQFISGKEGTQEEFF 222 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ Sbjct: 223 HTFNALHEEGKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIAILRK--- 279 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 + + L I E ++++A + T+ REL+GA ++V S +T +A E L + Sbjct: 280 --KAKAENLEIPNEAMLYIANQIDTNIRELEGALIRVVAYSSLINQDITTHLAAEALKDI 337 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + + + + I+DIQ+ V + Y + D + +R + V PRQVAMYLS+ +T S P+I Sbjct: 338 IPSSRPRVITIQDIQQKVGEFYGLKLEDFKARKRTKAVAFPRQVAMYLSRELTDFSLPKI 397 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G FG RDHTTV+HA K+ + ++ D L K ++ + I Sbjct: 398 GDAFGGRDHTTVIHAHEKISEAVKKDQELYKIIQSITEKIK 438 >gi|237806777|ref|YP_002891217.1| chromosomal replication initiator protein DnaA [Tolumonas auensis DSM 9187] gi|259645264|sp|C4L755|DNAA_TOLAT RecName: Full=Chromosomal replication initiator protein DnaA gi|237499038|gb|ACQ91631.1| chromosomal replication initiator protein DnaA [Tolumonas auensis DSM 9187] Length = 461 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 153/471 (32%), Positives = 251/471 (53%), Gaps = 20/471 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL+ ++ + W + L+ + L F+ W++++YL I L Sbjct: 4 SLWQQCLTRLQEELPSGEFGLWIRPLQA-EFGDRSLTLYAANRFILDWVRDKYLLRINSL 62 Query: 97 FQEEHS---RIQGVEILVRSVALPSVEKTASSPSIT-KLSPINTNISKSPIILGKQTISP 152 F E + R A TA++P ++ P T S + I+ Sbjct: 63 FTEICGADAPTLHFAVGRRPTAATVQMNTAAAPVADVRIGPAITVPSWTSKQDAMPEIN- 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S ++ + F F+EG SN++AL AA +AE Y NPLF++ GLGKTHL Sbjct: 122 -HKSNINETYTFENFVEGKSNQLALAAAHQVAENPGGAY-----NPLFLYGGTGLGKTHL 175 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N R+PN +V+Y+ +E F+ A+++N + R++D LLIDD+QF Sbjct: 176 LHAVGNGIRARKPNAKVIYMQSERFVQDMVKALQNNAIQEFQRYYRSVDALLIDDIQFFA 235 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E++ ++ R++SR G+++ + + E Sbjct: 236 KKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGWGLTIAIEPPELET 295 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ K+++ EV +A+ + ++ REL+GA N+++ F + Sbjct: 296 RVAIL-----MRKAEENKIHLPHEVAFFIAKRLRSNVRELEGALNRVIANARFTGKPINI 350 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L ++ K + IE+IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 351 DFVREALRDMLALQ-EKLVTIENIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAK 409 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 410 ELTNHSLPEIGDAFGGRDHTTVLHACRKIAELREESNDIKEDYSNLIRTLS 460 >gi|300853233|ref|YP_003778217.1| putative chromosomal replication initiator protein [Clostridium ljungdahlii DSM 13528] gi|300433348|gb|ADK13115.1| predicted chromosomal replication initiator protein [Clostridium ljungdahlii DSM 13528] Length = 450 Score = 498 bits (1282), Expect = e-138, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 265/474 (55%), Gaps = 27/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + I+ + + ++ + +W + + S+ ++ LSVP + K + ++Y Sbjct: 1 MNAHPKEIWEQSLNIINGEITEVSFNTWIKSITPVSIENDTFILSVPNDLTKGILTSKYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + S+ ++ L+ S + ++ ++ K S + + Sbjct: 61 NLIANALKLITSKKYNIKFLIASESEEALTLDNTNKRHNKNSVL---------------V 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F +F+ G+SNR A A+ ++AE S Y NPLFI+ VGLGKT Sbjct: 106 NDEMSTMLNPKYTFDSFVIGNSNRFAHAASLAVAESPSKAY-----NPLFIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + +VVY+++E F ++I+D+ + ++ RNID+LLIDD+QF Sbjct: 161 HLMHAIGHYILNNNSKSKVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDVLLIDDIQF 220 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 221 IAGKERTQEEFFHTFNALYEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDF 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LNI EV++++A + ++ REL+GA ++V S + Sbjct: 281 ETRMAILKK-----KADVENLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ ++K++ I+ IQ +VA +YN+ +DL S RR R V PRQ+AMYL Sbjct: 336 SIDLAVEALKDIISSKQSKQVTIDLIQDVVANYYNLKVDDLKSARRTRNVAFPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IG FG RDHTTV+HA K+ L+ D +L+ + L + +++ Sbjct: 396 CRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISTNLKQDESLQNAIGDLTKRLNQ 449 >gi|153952671|ref|YP_001393436.1| chromosomal replication initiation protein [Clostridium kluyveri DSM 555] gi|219853344|ref|YP_002470466.1| chromosomal replication initiator protein dnaA [Clostridium kluyveri NBRC 12016] gi|189044635|sp|A5N457|DNAA_CLOK5 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777896|sp|B9DXS7|DNAA_CLOK1 RecName: Full=Chromosomal replication initiator protein DnaA gi|146345552|gb|EDK32088.1| DnaA [Clostridium kluyveri DSM 555] gi|219567068|dbj|BAH05052.1| chromosomal replication initiator protein dnaA [Clostridium kluyveri NBRC 12016] Length = 451 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 264/474 (55%), Gaps = 26/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + I+ + +K + + +W + + S+ ++ L+VP + K + N+Y Sbjct: 1 MNAHPKEIWEQCLNIIKGETTEVSFNTWIKSITPISIENDTFMLTVPNDLTKGILSNKYT 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + Q S+ V+ L+ S + + I G + Sbjct: 61 DLIIRSLQMVTSQKYNVKFLISSELPEEF--------------LTLDTINEQNIKGSIIV 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S + L+ ++ F++F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 107 SDEMSAMLNPKYTFTSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + + +VVY+++E F ++I+D+ + + RNID+LLIDD+QF Sbjct: 162 HLMHAIGHHILHNNTSCKVVYVSSEKFTNELINSIKDDKNVEFRSKYRNIDVLLIDDIQF 221 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 222 IAGKERTQEEFFHTFNALYEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDF 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + KLNI EV+ ++A + ++ REL+GA ++V S + Sbjct: 282 ETRMAILKK-----KADVEKLNIPNEVMAYIATKIKSNIRELEGALIRIVAFSSLTNKEI 336 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++G++K++ IE IQ +V+ +YN+ +D S+RR R V PRQ+AMYL Sbjct: 337 SVDLAIEALKDIISSGQSKQVTIELIQDVVSNYYNLKVSDFKSSRRTRNVAFPRQIAMYL 396 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IG FG RDHTTV+HA K+ L+ D +LK V L + + + Sbjct: 397 CRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNNLKKDESLKNAVNDLTKRLDQ 450 >gi|188589439|ref|YP_001919466.1| chromosomal replication initiation protein [Clostridium botulinum E3 str. Alaska E43] gi|251779038|ref|ZP_04821958.1| chromosomal replication initiator protein DnaA [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|226735791|sp|B2UX43|DNAA_CLOBA RecName: Full=Chromosomal replication initiator protein DnaA gi|188499720|gb|ACD52856.1| chromosomal replication initiator protein DnaA [Clostridium botulinum E3 str. Alaska E43] gi|243083353|gb|EES49243.1| chromosomal replication initiator protein DnaA [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 456 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 263/474 (55%), Gaps = 21/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++ + +K+++ + +W + + S+ + +SVP +F K + RY Sbjct: 1 MDADLNKLWEKTLNIVKSEMSEVSFNTWIKSCEPISISDTSIKISVPNSFTKDILDKRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + S++ ++ ++ S E +S SI +++ + Sbjct: 61 SLVANSIEAVCSKLYDIKFIIESDLNNEDELNSSDNSIK---------NRNKNSTKNIVV 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F++F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 112 NDEMSSTLNPKYTFNSFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 166 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ +VVY+++E F +AI+D+ + RN+D+LLIDD+QF Sbjct: 167 HLMHAIGHYILQNNTKAKVVYVSSEKFTNELINAIKDDKNEEFRKKYRNVDVLLIDDIQF 226 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + + D+ Sbjct: 227 IAGKERTQEEFFHTFNELHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDF 286 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + L + EV+ ++A + ++ REL+GA +++ S + Sbjct: 287 ETRMAILKK-----KADVENLKVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREV 341 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A E L +++ + K + I IQ +VA ++N+ +DL S RR R V PRQ+AMYL Sbjct: 342 TVDLASEALKDIISKKQGKHVTIPSIQEIVANYFNLKIDDLKSQRRTRNVAYPRQIAMYL 401 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ + L++D L+ V + + +S+ Sbjct: 402 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISENLKSDENLQHTVSDITKKVSQ 455 >gi|251794037|ref|YP_003008768.1| chromosomal replication initiation protein [Paenibacillus sp. JDR-2] gi|247541663|gb|ACS98681.1| chromosomal replication initiator protein DnaA [Paenibacillus sp. JDR-2] Length = 450 Score = 498 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 151/473 (31%), Positives = 255/473 (53%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++ V S ++ ++ + +WF+ K V +++ ++ PT F W++ RY Sbjct: 1 MDSHTYDLWQQVLSIIQTKLSKPSFDTWFKATKASFVNDSLLEVTAPTTFAAEWLEGRYT 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I E R V + + PI +++PII + Sbjct: 61 KLIRNTLFEFLGRQVDVRFSIE-----------EAKPAEPAPPILPKAAEAPIIQEE--- 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F L+ ++ F TF+ G++NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 107 --TFNHMLNPKYTFDTFVIGANNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P+ +++Y+++E F F +AIRDN + ++ RNID+LLIDD+QF Sbjct: 160 HLMHAIGHYIMDHNPSTKIMYISSEKFTNEFINAIRDNRGESFRNKYRNIDVLLIDDIQF 219 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ+V ++DR P E+ +L+ R+RSR + G+ + D Sbjct: 220 LAGKDGTQEEFFHTFNALHEERKQIVISSDRTPKEIPTLEERLRSRFEWGLITDIQAPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L+I E ++++A + T+ REL+GA ++V S + Sbjct: 280 ETRIAILRK-----KAKAENLDIPNEAMVYIANQIDTNIRELEGALIRVVAYSSLINQDI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T+ +A E L ++ + K + I DIQ+ V + Y + + + +R + V PRQ+AMYL Sbjct: 335 TSHLAAEALKDIIPSSRPKMITINDIQQKVGEFYGLRLEEFKARKRTKAVAYPRQIAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ + L+ D L K ++ L I Sbjct: 395 SRELTDYSLPKIGEAFGGRDHTTVIHAHEKISQQLKQDQDLYKILQNLTEKIK 447 >gi|187935721|ref|YP_001884266.1| chromosomal replication initiation protein [Clostridium botulinum B str. Eklund 17B] gi|226735792|sp|B2THB4|DNAA_CLOBB RecName: Full=Chromosomal replication initiator protein DnaA gi|187723874|gb|ACD25095.1| chromosomal replication initiator protein DnaA [Clostridium botulinum B str. Eklund 17B] Length = 456 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 263/474 (55%), Gaps = 21/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++ + +K+++ + +W + + S+ + +SVP +F K + RY Sbjct: 1 MDADLNKLWEKTLNIVKSEMSEVSFNTWIKSCEPISISDTSIKISVPNSFTKDILDKRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + S++ ++ ++ S E S N++ ++ + Sbjct: 61 SLVANSIEAVCSKLYEIKFIIESDLNNEDELNNSD---------NSDKNRDKNSRRNIVV 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F++F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 112 NDEMSSTLNPKYTFNSFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 166 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ +VVY+++E F +AI+D+ + RN+D+LLIDD+QF Sbjct: 167 HLMHAIGHYILQNNTKAKVVYVSSEKFTNELINAIKDDKNEEFRKKYRNVDVLLIDDIQF 226 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + + D+ Sbjct: 227 IAGKERTQEEFFHTFNELHDANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQVPDF 286 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + L + EV+ ++A + ++ REL+GA +++ S + Sbjct: 287 ETRMAILKK-----KADVENLKVANEVMGYIATKIKSNIRELEGALIRIIAYSSLTNREV 341 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A E L +++ + K + I IQ +VA ++N+ +DL S RR R V PRQ+AMYL Sbjct: 342 TVDLASEALKDIISKKQGKHVTIPSIQEIVANYFNLKIDDLKSQRRTRNVAYPRQIAMYL 401 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ + L++D +L+ V + + +S+ Sbjct: 402 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISENLKSDESLQHTVSDITKKVSQ 455 >gi|88860616|ref|ZP_01135253.1| DNA replication initiator protein [Pseudoalteromonas tunicata D2] gi|88817211|gb|EAR27029.1| DNA replication initiator protein [Pseudoalteromonas tunicata D2] Length = 460 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 248/470 (52%), Gaps = 19/470 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ L++++ ++ W + L+ S + + + P F+ W++ +YL I +L Sbjct: 4 SVWQSCLYVLQDELPSQQFSMWVRPLQAES-TEDTLTIYAPNRFVLDWVREKYLNRINEL 62 Query: 97 FQEEHSR---IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E ++ + V S + +S + + + Sbjct: 63 LVEICGNETPTLRFDVGSKPVLNKPAPAVVSEAQNPPANKTRAEVSSPQQV--EPALKNA 120 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S + + F +F+EG SN++A AA +A+ NP+FI+ GLGKTHLL Sbjct: 121 HKSNIKETYTFDSFVEGKSNQLAKAAASQVADNPGTA-----FNPVFIYGGTGLGKTHLL 175 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +PN ++ Y+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 176 HAVGNGILANKPNAKIAYMHSERFVQDMVRALQNNAIEEFKRYYRSVDALLIDDIQFFAN 235 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+E ++ R++SR G+++ + + E R Sbjct: 236 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEIEGVEDRLKSRFGWGLTIAIEPPELETR 295 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + + K+ + EEV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 296 VAIL-----MKKAQQSKIKLPEEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 350 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK Sbjct: 351 FVKEALRDLLALQ-DKLVTIDNIQRTVAEYYRIRVSDLLSKRRSRSVARPRQVAMALSKE 409 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK++ + E +K++ + L R +S Sbjct: 410 LTNHSLPEIGDAFGGRDHTTVLHACRKIKSLREETHEIKEDYQNLIRTLS 459 >gi|255746805|ref|ZP_05420751.1| chromosomal replication initiator protein dnaA [Vibrio cholera CIRS 101] gi|262155885|ref|ZP_06029007.1| chromosomal replication initiator protein dnaA [Vibrio cholerae INDRE 91/1] gi|262172778|ref|ZP_06040456.1| chromosomal replication initiator protein dnaA [Vibrio mimicus MB-451] gi|262402082|ref|ZP_06078646.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC586] gi|255735562|gb|EET90961.1| chromosomal replication initiator protein dnaA [Vibrio cholera CIRS 101] gi|261893854|gb|EEY39840.1| chromosomal replication initiator protein dnaA [Vibrio mimicus MB-451] gi|262030337|gb|EEY48979.1| chromosomal replication initiator protein dnaA [Vibrio cholerae INDRE 91/1] gi|262351728|gb|EEZ00860.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC586] Length = 458 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 252/469 (53%), Gaps = 22/469 (4%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L E Sbjct: 1 MQRLQEELPAAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNINRLLMEFSG 59 Query: 103 RI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII-----LGKQTISPVF 154 E+ R V P ++ + S +++ I Sbjct: 60 NDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSAAADITH 119 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ GLGKTHLL Sbjct: 120 RSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLLH 174 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA + PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 AVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 234 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 235 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRV 294 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 AIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDF 349 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K + Sbjct: 350 VREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKEL 408 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 457 >gi|92112137|ref|YP_572065.1| chromosomal replication initiation protein [Chromohalobacter salexigens DSM 3043] gi|123084264|sp|Q1R1P2|DNAA_CHRSD RecName: Full=Chromosomal replication initiator protein DnaA gi|91795227|gb|ABE57366.1| chromosomal replication initiator protein DnaA [Chromohalobacter salexigens DSM 3043] Length = 495 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 152/502 (30%), Positives = 261/502 (51%), Gaps = 48/502 (9%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ + L++++ + +W + L+ N + L P F++ W+ ++YL+ I +L Sbjct: 4 ALWQQCLNFLQDELSSQQFNTWIRPLQAEDGDANELCLLAPNRFVRDWVNDKYLKRINEL 63 Query: 97 FQE-EHSRIQGVEILV-----------RSVALPSVEKTASSPSITKLSPINTNISKSPII 144 ++ + V++ V R + P T ++ T+ ++ Sbjct: 64 LRDLASGKPPKVQLTVGSRRNVAMSSPRDLGAPVSATTMNASRPTEAPAVHAAPRAKGDY 123 Query: 145 LGKQTISPV-----------------------FGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 +Q I + S L+ F F TF+EG SN++A A++ Sbjct: 124 ADEQEIDRLREREETPRRGGGERQVQVEGSLKHQSGLNPNFTFETFVEGKSNQLARAASR 183 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +AE Y NPLF++ VGLGKTHL+ A+ N ++ N +VVYL +E F+ Sbjct: 184 QVAENPGGAY-----NPLFLYGGVGLGKTHLMHAVGNHLAGQRENAKVVYLHSERFVADM 238 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 A++ N + K R++D LLIDD+QF GK Q EF H N+LL+ +Q++ +DR Sbjct: 239 VKALQLNAINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDR 298 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P E+ ++ R++SR G++V + + E R +IL + + + K+++ + + Sbjct: 299 YPKEISGVEERLKSRFGWGLTVAIEPPELETRVAIL-----MKKADQAKVDLPHDAAFFI 353 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A+ + ++ REL+GA +++ F +T + E L L+ K++ +++IQR VA Sbjct: 354 AQKIRSNVRELEGALKKVIADSHFMGKPITQDFIRESLKDLLALQ-DKQVGVDNIQRTVA 412 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++Y I DLLS RR R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RKV Sbjct: 413 EYYKIKLADLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKV 472 Query: 480 EKMLETDITLKKEVELLKRLIS 501 + + E ++++ + L RL++ Sbjct: 473 QTLKEESADIREDYKNLLRLLT 494 >gi|302388600|ref|YP_003824421.1| chromosomal replication initiator protein DnaA [Thermosediminibacter oceani DSM 16646] gi|302199228|gb|ADL06798.1| chromosomal replication initiator protein DnaA [Thermosediminibacter oceani DSM 16646] Length = 449 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 142/473 (30%), Positives = 251/473 (53%), Gaps = 30/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVG-PDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + N ++ V L +++ + ++ + K S+ +I + VP FLK ++ RY Sbjct: 1 MTHNLPDLWQQVLKTLGSELNNDVSFNTFLKPTKLVSIEDDIAIVEVPNEFLKGILEKRY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + +R + + +A T + + Sbjct: 61 ANLLKDILGSILNRSVSIFFKIDPLASEEQASTVDTAEKD-----------------IKP 103 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 ++ S L+S++ F TF+ G+SNR A A+ ++A+ + Y NP FI+ VGLGK Sbjct: 104 VAEEGQSTLNSKYTFDTFVVGNSNRFAHAASLAVAQAPAKAY-----NPFFIYGGVGLGK 158 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + ++ P+ +VVY+++E F ++IRD+ + ++ RNID+LLIDD+Q Sbjct: 159 THLMHAIGHYILQHNPSCKVVYVSSEKFTNELINSIRDDKNVEFRNKYRNIDVLLIDDIQ 218 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 219 FIAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPD 278 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 +E R +IL+ + L + ++V+ +A + T+ REL+GA ++V S Sbjct: 279 FETRIAILRK-----KAMMENLTVPDDVINFIATKIETNIRELEGALIRIVAFSSLTNKP 333 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++A+ +L L+ + K + + DI ++V H++I +D S +R + + RQ+AMY Sbjct: 334 IDLDLAEHVLKDLLPNNKPKTVTVMDILQVVGGHFSIKIDDFKSKKRTKELAYARQIAMY 393 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L + +T S P+IG FG RDHTTVLHA K+ + ++ D L +E LK+ I Sbjct: 394 LCRELTDYSLPKIGEEFGGRDHTTVLHACEKISRDIQRDAQLSSLIENLKKKI 446 >gi|294675558|ref|YP_003576173.1| chromosomal replication initiator protein DnaA [Rhodobacter capsulatus SB 1003] gi|294474378|gb|ADE83766.1| chromosomal replication initiator protein DnaA [Rhodobacter capsulatus SB 1003] Length = 457 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 176/467 (37%), Positives = 272/467 (58%), Gaps = 16/467 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ V + L+ VG + +W L+ + IV PT F+ W+ Y E I Sbjct: 2 TNELWGQVCNELQRTVGRTNFNTWIAPLQLIELSDGIVSFEAPTKFMCDWVSRNYGEPIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + ++ V I V + +P + ++ + + P Sbjct: 62 RELRNSGMAVERVAIRV------PEGRPMPAPEARPMPEKAPAPARKAARVSEDQDLP-- 113 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+PLD+RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 114 GAPLDARFTFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMH 168 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA+ + LRV+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Sbjct: 169 AIAHELQTQHGELRVLYLSAEQFMYRFVQALRDRQIMDFKELFRSVDVLMVDDVQFIAGK 228 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L DYE+R Sbjct: 229 DSTQEEFFHTFNALVDQGKQIVISADRAPGEIKDLEDRIKSRLQCGLVVDLHPTDYELRL 288 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL+ + I +P L + VL +A +TT+ R L+GA +L S +T ++ Sbjct: 289 GILQTKTEIHAARNPGLVVASGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDL 348 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L+ ++ +++ IE+IQR VA+HYN+ +D++ +R+RT+ RPRQVAMYLSK + Sbjct: 349 AQECLADILRAS-DRRVTIEEIQRKVAEHYNVRLSDMIGPKRLRTIARPRQVAMYLSKHL 407 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 T RS PEIGRRFG RDHTT++H +RK+++++ TD L +++ LLKRL Sbjct: 408 TTRSLPEIGRRFGGRDHTTIMHGIRKIDELMTTDRQLAEDIGLLKRL 454 >gi|261213263|ref|ZP_05927545.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC341] gi|260837537|gb|EEX64240.1| chromosomal replication initiator protein dnaA [Vibrio sp. RC341] Length = 458 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 252/469 (53%), Gaps = 22/469 (4%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L E Sbjct: 1 MQRLQEELPAAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNINRLLMEFSG 59 Query: 103 RI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII-----LGKQTISPVF 154 E+ R V P ++ + S +++ I Sbjct: 60 NDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSAAADITH 119 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ GLGKTHLL Sbjct: 120 RSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLLH 174 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA + PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 AVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 234 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 235 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRV 294 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 AIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDF 349 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K + Sbjct: 350 VREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKEL 408 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 457 >gi|71278268|ref|YP_266783.1| chromosomal replication initiator protein DnaA [Colwellia psychrerythraea 34H] gi|123761122|sp|Q48AS7|DNAA_COLP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|71144008|gb|AAZ24481.1| chromosomal replication initiator protein DnaA [Colwellia psychrerythraea 34H] Length = 461 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 152/471 (32%), Positives = 256/471 (54%), Gaps = 18/471 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S + S L+ ++ ++ W + L+ + N++ L P F+ W++++Y+ I + Sbjct: 3 HSPWQRCLSVLQEELPAQQFSMWIRPLQCV-INDNVMTLYAPNRFVLDWVRDKYVNRINE 61 Query: 96 LF---QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 L + + + ++ + SV + S + + + +P + ++ P Sbjct: 62 LLTINESNNPLLLRFDVGSKPTIDNSVTNSPVSRNTGGNESLFAKATSAPKVAEPESNIP 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + + + F F+EG SN++A AA +A+ Y NPLFI+ GLGKTHL Sbjct: 122 K-KTNVRLNYTFENFVEGKSNQLARAAASQVADNPGTAY-----NPLFIYGGTGLGKTHL 175 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + +PN ++ Y+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 176 LHAVGNGILLNKPNAKIAYMHSERFVQDMVRALQNNAMEKFKQYYRSVDALLIDDIQFFA 235 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+LL+ +QV+ +DR P E+ +D R++SR G+++ + + E Sbjct: 236 GKERTQEEFFHTFNALLEGNQQVILTSDRYPKEINGVDDRLKSRFGWGLTLAIEPPELET 295 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +ILK + ++ ++N+ +EV +A+ + ++ REL+GA N+++ +F +T Sbjct: 296 RVAILKR-----KAQESQINLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITI 350 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L L+ K + I++IQR VA++Y I DLLS RR R+V RPRQ+AM LSK Sbjct: 351 DFVREALRDLLALQ-DKLVTIDNIQRTVAEYYKIKIADLLSKRRNRSVARPRQIAMALSK 409 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RKV+ + E +K++ L R +S Sbjct: 410 ELTNHSLPEIGDAFGGRDHTTVLHACRKVKSLREETHDIKEDYSNLIRTLS 460 >gi|302390798|ref|YP_003826618.1| chromosomal replication initiator protein DnaA [Acetohalobium arabaticum DSM 5501] gi|302202875|gb|ADL11553.1| chromosomal replication initiator protein DnaA [Acetohalobium arabaticum DSM 5501] Length = 449 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 158/470 (33%), Positives = 255/470 (54%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + I+ K+++ + +W + K SV ++ + VP F K W++ RY I Sbjct: 5 DLTEIWQEALEIFKSELSKPSFKTWLKSTKLISVENDHAVIEVPNEFSKDWLETRYSNLI 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + R ++ + + + T + N S Sbjct: 65 KETISQLIDRKINIKFTIPTNKEEKLVNKKKKDKKTDNQEEDDNNPAS------------ 112 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GSSNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 113 ----LNPKYTFDTFVIGSSNRFAHAASLAVAEAPAKAY-----NPLFIYGDVGLGKTHLM 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + I+ +L+VVY+T+E F ++IRD+ + ++ RNID+LLIDD+QFL G Sbjct: 164 HAIGHYIIEHNSDLKVVYVTSEKFTNELINSIRDDNTVKFRNKYRNIDILLIDDIQFLAG 223 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 224 KERTQEEFFHTFNALHEANKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQEPDLETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + L + EV++++A + ++ REL+GA ++V S +T E Sbjct: 284 IAILRK-----KATLEDLEVPNEVIVYIANQIHSNIRELEGALIRVVAYSSLTNKEITVE 338 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L +++T E +++ I+ IQ++VA HYN+ D+ S +R R + PRQVAMYLS+ Sbjct: 339 LAQEALKDIISTTEAEEINIKLIQQIVANHYNLEIEDMKSRKRTRAIAFPRQVAMYLSRE 398 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTVLHA K++ E DI K ++ L I+ Sbjct: 399 LTDSSLPKIGEKFGGRDHTTVLHAYNKIDDKKEEDIQFKNTIKTLTNKIN 448 >gi|119385558|ref|YP_916613.1| chromosomal replication initiation protein [Paracoccus denitrificans PD1222] gi|119376153|gb|ABL70917.1| chromosomal replication initiator protein DnaA [Paracoccus denitrificans PD1222] Length = 448 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 179/467 (38%), Positives = 278/467 (59%), Gaps = 24/467 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++ L+ VG D +++W + L+ V ++ PT FL W+ Y + I K Sbjct: 2 DRLWGQAREELQKIVGTDSFSTWIEPLRLTGVADGTATIACPTRFLSDWVSRHYSDDILK 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + +Q + RS + A++P + + +P P + G++ ++ Sbjct: 62 VLDRMGGPVQRLSFETRS----QTARQAAAPVVKRPAP--------PRVSGEEELA---- 105 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PLDSRF F F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ A Sbjct: 106 APLDSRFTFENFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHA 160 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IA RQP RV+YL+AE FM+RF A+RD ++ K+ R + +L++DD+QF+ GK Sbjct: 161 IAREIQIRQPEARVLYLSAEQFMYRFVQALRDRTVMDFKELFRTVSVLMVDDVQFIAGKD 220 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L+D KQ+V +ADR P E++ ++ RI+SRLQ G+ V L DYE+R Sbjct: 221 STQEEFFHTFNTLVDQGKQIVISADRAPGEIKDMEERIKSRLQCGLVVDLHPTDYELRLG 280 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+++ + + P L I VL +A +T++ R L+GA +L S +T ++ Sbjct: 281 ILQSKTDSFRAQYPGLLIAPGVLEFLAHRITSNVRVLEGALQRLFAFASLMGREITLDMT 340 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L+ ++ +K+ IE+IQR VA+HYNI D++ +RVRTV RPRQ+AMYL+K MT Sbjct: 341 QECLADILRAN-DRKVSIEEIQRKVAEHYNIRLADMIGPKRVRTVARPRQIAMYLAKQMT 399 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RS PEIGRRFG RDHTT++H V+K+E++ +D +L ++++LL+RL+ Sbjct: 400 SRSLPEIGRRFGGRDHTTIMHGVKKIEELRGSDRSLSEDIDLLRRLL 446 >gi|168183727|ref|ZP_02618391.1| chromosomal replication initiator protein DnaA [Clostridium botulinum Bf] gi|237793321|ref|YP_002860873.1| chromosomal replication initiation protein [Clostridium botulinum Ba4 str. 657] gi|259645246|sp|C3KXQ7|DNAA_CLOB6 RecName: Full=Chromosomal replication initiator protein DnaA gi|182673252|gb|EDT85213.1| chromosomal replication initiator protein DnaA [Clostridium botulinum Bf] gi|229261050|gb|ACQ52083.1| chromosomal replication initiator protein DnaA [Clostridium botulinum Ba4 str. 657] Length = 448 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 265/474 (55%), Gaps = 29/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + + +K ++ + +W + + S+ +N L+VP +F K +++RY Sbjct: 1 MSTHLTETWEKAINIIKGELTEVSFNTWIKSINPISLENNSFKLAVPNDFTKGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ ++ +V + + + + + + Sbjct: 61 DLIVNALKLLTSKKYNIDFIVTTEEKIEENEKNHNNEKSNI-----------------VV 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NDEMSTMLNPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF Sbjct: 159 HLMHAIGHYILHNNPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQF 218 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 219 IAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + KLNI EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRMAILKK-----KADVEKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYL Sbjct: 334 SVDLASEALKDIISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ L+ D +L+ + L + I++ Sbjct: 394 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNNLKKDESLQNAINELNKRINQ 447 >gi|226942171|ref|YP_002797244.1| chromosomal replication initiation protein [Azotobacter vinelandii DJ] gi|259645245|sp|C1DFU2|DNAA_AZOVD RecName: Full=Chromosomal replication initiator protein DnaA gi|226717098|gb|ACO76269.1| Bacterial chromosomal replication initiator protein DnaA [Azotobacter vinelandii DJ] Length = 478 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 161/486 (33%), Positives = 264/486 (54%), Gaps = 33/486 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-DGDELRVYAPNRFVLDWVNEKYLGRLLEL 62 Query: 97 FQEEHSRIQ-GVEILV---RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 E + V +L+ RS A +V+ + P++ + +P+ + + + Q ++P Sbjct: 63 LGERSEDVTPSVSLLIGSKRSSAPRAVQPASPPPAVVQAAPVAIEEASAARTVDAQPVAP 122 Query: 153 V---------------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 S L+ F F F+EG SN++A AA +A+ HGY N Sbjct: 123 ATVRTERSVQVEGGLKHTSYLNRAFTFENFVEGKSNQLARAAAWQVADNPKHGY-----N 177 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ A++ N K Sbjct: 178 PLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFY 237 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D LLIDD+QF K Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR Sbjct: 238 RSVDALLIDDIQFFAKKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRF 297 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G++V + + E R +IL + + E K+ + + +A+ + ++ REL+GA Sbjct: 298 GWGLTVAVEPPELETRVAIL-----MKKAEQTKVELPHDAAFFIAQRIRSNVRELEGALK 352 Query: 377 QLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 +++ F +T E+ E L L+ K + I++IQR VA++Y I DLLS RR Sbjct: 353 RVIAHSHFTNHPITIELIRESLKDLLALQ-DKLVSIDNIQRTVAEYYKIKIADLLSKRRS 411 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK+ ++ ETD ++++ + Sbjct: 412 RSVARPRQVAMALSKELTNHSLPEIGDSFGGRDHTTVLHACRKIAELRETDADIREDYKN 471 Query: 496 LKRLIS 501 L R ++ Sbjct: 472 LLRTLT 477 >gi|187777367|ref|ZP_02993840.1| hypothetical protein CLOSPO_00923 [Clostridium sporogenes ATCC 15579] gi|187774295|gb|EDU38097.1| hypothetical protein CLOSPO_00923 [Clostridium sporogenes ATCC 15579] Length = 448 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 149/474 (31%), Positives = 265/474 (55%), Gaps = 29/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + + +K ++ + +W + + S+ +N + L+VP +F K +++RY Sbjct: 1 MNTHLTETWEKAINIIKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ ++ +V T I N + Sbjct: 61 DLIVNALKLLTSKKYNIDFIV-----------------TTEEKIEENQKNHNNEKSNIVV 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NDEMSTMLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF Sbjct: 159 HLMHAIGHYILNNNPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQF 218 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 219 IAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + KLNI EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRMAILKK-----KADVEKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYL Sbjct: 334 SVDLASEALKDIISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ L+ D +L+ ++ L + I++ Sbjct: 394 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNNLKKDESLQNAIKELNKRINQ 447 >gi|148378012|ref|YP_001252553.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A str. ATCC 3502] gi|153930843|ref|YP_001382411.1| chromosomal replication initiation protein [Clostridium botulinum A str. ATCC 19397] gi|153935412|ref|YP_001385963.1| chromosomal replication initiation protein [Clostridium botulinum A str. Hall] gi|166201876|sp|A7FPR6|DNAA_CLOB1 RecName: Full=Chromosomal replication initiator protein DnaA gi|166201877|sp|A5HXP7|DNAA_CLOBH RecName: Full=Chromosomal replication initiator protein DnaA gi|148287496|emb|CAL81555.1| chromosomal replication initiator protein [Clostridium botulinum A str. ATCC 3502] gi|152926887|gb|ABS32387.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A str. ATCC 19397] gi|152931326|gb|ABS36825.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A str. Hall] Length = 448 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 264/474 (55%), Gaps = 29/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + + +K ++ + +W + + S+ +N + L+VP +F K +++RY Sbjct: 1 MNTHLTETWEKAINIIKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ ++ +V T I N + Sbjct: 61 DLIVNALKLLTSKKYNIDFIV-----------------TTEEKIEENQKNHNNEKSNIVV 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 NDEMSTMLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF Sbjct: 159 HLMHAIGHYILHNNPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQF 218 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 219 IAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LNI EV++++A + ++ REL+GA ++V S + Sbjct: 279 ETRMAILKK-----KADVENLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEI 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYL Sbjct: 334 SIDLASEALKDIISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ L+ D +L+ ++ L + I++ Sbjct: 394 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNNLKKDESLQNAIKELNKRINQ 447 >gi|154250459|ref|YP_001411283.1| chromosomal replication initiator protein DnaA [Parvibaculum lavamentivorans DS-1] gi|154154409|gb|ABS61626.1| chromosomal replication initiator protein DnaA [Parvibaculum lavamentivorans DS-1] Length = 519 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 189/496 (38%), Positives = 302/496 (60%), Gaps = 24/496 (4%) Query: 17 IAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV 76 ++E+ P + +R ++ + V +RL+ ++G + SWF++++ + V V LSV Sbjct: 29 LSEEAPGAAL-RRAPAMSLAEQWRRVRARLQAELGEATFNSWFKQVEMNGVSEGRVMLSV 87 Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 PT F++ WI + Y + + KL+ +E V++LV + A +T + ++ +P+ T Sbjct: 88 PTRFIRNWIVSHYADRLAKLWADEDPSFCRVDVLVGAEA-----RTEDAAPVSDAAPVET 142 Query: 137 NISKSPIILGKQTI----------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 +++P + T G+PLD RF F F+ G SN +A AA+ +AE Sbjct: 143 AAAQAPSAIRADTPLATAVPHGFEDAGVGAPLDPRFTFDAFVVGKSNELAHAAARRVAEA 202 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 T V NPLF++ VGLGKTHL+ AIA KRQP +V+YL+AE FM++F A+R Sbjct: 203 -----TDVTFNPLFLYGGVGLGKTHLMHAIAWEIRKRQPERKVLYLSAEKFMYQFVRALR 257 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K R++D+L+IDD+QF+ GK Q EF H N+L+D +QV+ +ADR PS+L Sbjct: 258 FKDTMAFKQQFRSVDVLMIDDVQFISGKDSTQEEFFHTFNALIDHNRQVIISADRSPSDL 317 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 E ++ RIRSRL G++ + DYE+R IL+ + + + ++I VL +A + Sbjct: 318 EGIEERIRSRLGWGLAADIHPTDYELRLGILQAKADEMMQRNGPVSIPPGVLEFLAHRIV 377 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA ++V S +T +++ E+L L+ + +K+ IE+IQR VA++YN+ Sbjct: 378 SNVRELEGALKRVVAYASLVGRPITLDMSQEVLRDLLRSN-DRKITIEEIQRRVAEYYNV 436 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 D+LS RR R V RPRQVAMYLSK +T RS PEIGR+FG RDHTTV+HAVRK++++ Sbjct: 437 RLADMLSARRARAVARPRQVAMYLSKQLTTRSLPEIGRKFGGRDHTTVIHAVRKIDELCL 496 Query: 485 TDITLKKEVELLKRLI 500 D ++++V+LL+R++ Sbjct: 497 VDSGIEEDVDLLRRML 512 >gi|28896785|ref|NP_796390.1| chromosomal replication initiation protein [Vibrio parahaemolyticus RIMD 2210633] gi|260876543|ref|ZP_05888898.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus AN-5034] gi|31340039|sp|Q87TQ7|DNAA_VIBPA RecName: Full=Chromosomal replication initiator protein DnaA gi|28804993|dbj|BAC58274.1| chromosomal DNA replication initiator DnaA [Vibrio parahaemolyticus RIMD 2210633] gi|308090368|gb|EFO40063.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus AN-5034] gi|328471238|gb|EGF42140.1| chromosomal replication initiation protein [Vibrio parahaemolyticus 10329] Length = 468 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 155/478 (32%), Positives = 257/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +IT Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIT 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 +L QE E+ R V+ P T + + S + + Sbjct: 61 RLLQEYCGNDIPNLRFEVGSRPVSAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 152 P------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 P S ++ + F F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 PQAIAAINHRSNMNPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|114319167|ref|YP_740850.1| chromosomal replication initiation protein [Alkalilimnicola ehrlichii MLHE-1] gi|122312809|sp|Q0ACS7|DNAA_ALHEH RecName: Full=Chromosomal replication initiator protein DnaA gi|114225561|gb|ABI55360.1| chromosomal replication initiator protein DnaA [Alkalilimnicola ehrlichii MLHE-1] Length = 451 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 156/469 (33%), Positives = 246/469 (52%), Gaps = 24/469 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S++ RL+ ++ +W + L+ + + L P F+ W+K + + IT+ Sbjct: 3 NSLWKQCLRRLEQEIPDQQLNTWIRPLQAQE-EEDRLRLLAPNRFVLDWVKAHFADRITE 61 Query: 96 LFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L + R +E+ + S A+ + + T + + + Sbjct: 62 LLSAQRPDRPPRLELQIGSSAVVAPPRRRQVSVTTPSPSAAADQTPATRSAA-------- 113 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+S F F TF+EG SN++A A+ + E Y NPLF++ VGLGKTHL+ Sbjct: 114 -SNLNSNFTFDTFVEGKSNQLARAASMQVVENPGTAY-----NPLFLYGGVGLGKTHLMH 167 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA ++R+P RV+YL +E F+ A++ N K R +D LLIDD+QF K Sbjct: 168 AVGNAMLRRRPEARVLYLHSERFVADMVKALQHNAINEFKRHYRMVDALLIDDIQFFARK 227 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +QV+ DR P E+ L+ R++SR G++V + + E R Sbjct: 228 ERSQEEFFHTFNALLEGEQQVIMTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELETRV 287 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL +S+ +++ EV +A+ + ++ REL+GA ++V F +T E Sbjct: 288 AIL-----MSKALQEGVDLPHEVAFFIAKRIRSNIRELEGALRRVVANAQFTGQEITVEF 342 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQ+ VA++Y I DLLS RR R++ RPRQ+AM L+K + Sbjct: 343 TKEALRDLLALQ-DKLVTIDNIQKTVAEYYKIRVADLLSKRRSRSITRPRQMAMALAKEL 401 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RKVE + D ++++ L R +S Sbjct: 402 TSHSLPEIGDAFGGRDHTTVLHACRKVESLCAEDSRIEEDYSNLLRTLS 450 >gi|220927460|ref|YP_002504369.1| chromosomal replication initiation protein [Clostridium cellulolyticum H10] gi|254777895|sp|B8I3R2|DNAA_CLOCE RecName: Full=Chromosomal replication initiator protein DnaA gi|219997788|gb|ACL74389.1| chromosomal replication initiator protein DnaA [Clostridium cellulolyticum H10] Length = 440 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 253/473 (53%), Gaps = 37/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V I+ LK ++ + +W ++ S+ N + L VP +F K ++ RY Sbjct: 1 MNVQLNEIWNRTLELLKGEMTEISFNTWILTIEPISIDSNTITLGVPADFNKGILEARYS 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I ++ R + + PS T + P+ ++ Sbjct: 61 YLIKNALRQISHRDYNIYFAI--------------PSQTPVKPV-----------AQEYT 95 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+ NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 96 EDSNMSFLNPKYTFDTFVIGNGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 150 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + + P L+V+Y+++E F +AIRD+ + RNID+LLIDD+QF Sbjct: 151 HLMHAIGHFVLSQNPALKVLYVSSEKFTNELINAIRDDKNEEFRYKYRNIDVLLIDDIQF 210 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK + EF H N+L ++ KQ++ ++D+PP E+ +L+ R+RSR + G+ + D Sbjct: 211 IGGKERTEEEFFHTFNALYEANKQIIISSDKPPKEIPTLEDRLRSRFEWGLIADIAPPDL 270 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + + L++ ++V++ +A V ++ REL+GA N+++ + I+ Sbjct: 271 ETRIAILRK-----KAQLENLDVPDDVMVFIADKVASNIRELEGALNRVIAYSTLTENII 325 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A E L ++N + + + IQ VA+++++ +DL S RR R V PRQ+AMYL Sbjct: 326 NVDMAVEALKDMLNNSKAIIINSKTIQEAVARYFHLKTDDLKSKRRSRDVSFPRQIAMYL 385 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT S P+IG FG RDHTTV+HA K+ L LK+ VE +K+ I+ Sbjct: 386 CRDMTDMSLPKIGDEFGGRDHTTVIHACEKINNDLNNSTELKRTVEEIKKNIT 438 >gi|83588876|ref|YP_428885.1| chromosomal replication initiation protein [Moorella thermoacetica ATCC 39073] gi|83571790|gb|ABC18342.1| chromosomal replication initiator protein DnaA [Moorella thermoacetica ATCC 39073] Length = 442 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 248/470 (52%), Gaps = 36/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V + + + L+ QV +WF + ++ N + L+V F + +I++RY Sbjct: 4 VQLDLAWQQALTILEKQVSTPALETWFYEARPVTMQGNTLVLAVANEFARDYIQSRYYPL 63 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + Q+ R ++I V L S + P Sbjct: 64 IQEALQQVLGRKI-IKIQVICFPLSSSNQRQEPELEDPSLP------------------- 103 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 PL+ ++ F TF+ G+SNR A A ++AE + Y NPLFI+ VGLGKTHL Sbjct: 104 ----PLNPKYTFETFVVGNSNRFAHAACLAVAESPASSY-----NPLFIYGGVGLGKTHL 154 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI + + P LRV+Y+++E F +AI+D + RNID+LLIDD+QFL Sbjct: 155 MQAIGHRVRQHLPELRVMYISSEKFTNDLINAIKDKATEQFRTKYRNIDVLLIDDIQFLA 214 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 215 KKESTQEEFFHTFNHLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLET 274 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + +N+ +EV+ +A+ + ++ REL+GA ++ +F +T Sbjct: 275 RMAILRK-----KAVAEGINLPDEVMFFIAQKIDSNIRELEGALIRVAAYANFTKKEITP 329 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A+E+L +++ K + I IQ VA ++N+ DL + +R R+V PRQ+AMYL + Sbjct: 330 GLAEEILKDVLDLARPKPITIRLIQETVANYFNLKVEDLKAKKRTRSVAYPRQIAMYLCR 389 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG+ FG RDHTTVLHA K+ L TD +L + + +++ + Sbjct: 390 ELTESSLPDIGKEFGGRDHTTVLHAYDKIRDDLNTDPSLPQVIAQIRQQL 439 >gi|326793323|ref|YP_004311143.1| Chromosomal replication initiator protein dnaA [Marinomonas mediterranea MMB-1] gi|326544087|gb|ADZ89307.1| Chromosomal replication initiator protein dnaA [Marinomonas mediterranea MMB-1] Length = 514 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 158/521 (30%), Positives = 259/521 (49%), Gaps = 67/521 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + +L+++V + +W + L+ + + L P F+ W+ N+Y I +L Sbjct: 4 EFWERCLGKLQDEVSASQFNTWIRPLQAEESVSGELCLFAPNRFVLDWVNNKYQARIKEL 63 Query: 97 FQEEHSRIQGVEI--------------------LVRSVALPSVEKTASS---PSITKLSP 133 E + +V + A P S P P Sbjct: 64 LAEFSGENPAPNLMLAVKQPGFAATSAPPPPPPVVETKAPPVATVENDSGYRPGQVTYEP 123 Query: 134 INTNISK--------------------SPIILGKQTISP-----------VFGSPLDSRF 162 + IS P G+ ++P G+ L++ F Sbjct: 124 VEEPISGLEFEAPLTLSDSDVLLNGDLEPYEQGQLPLTPPNRKVEVEGGINHGANLNNSF 183 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+EG SN++A AA +AE Y NPLFI+ VGLGKTHL+QA+ ++ Sbjct: 184 TFDNFVEGKSNQLAHAAALQVAENPGGAY-----NPLFIYGGVGLGKTHLMQAVGTELMR 238 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 PN +VVYL +E F+ A++ N + K R++D LLIDD+QF GK Q EF Sbjct: 239 HNPNAKVVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGKDRTQEEFF 298 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+LL+ +Q++ DR P E++ L+ R++SR G++V + + E R +IL Sbjct: 299 HTFNALLEGGQQMILTCDRYPKEIQGLEDRLKSRFGWGLTVAVEPPELETRVAIL----- 353 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 + + E+ + ++ + +A+ + ++ REL+GA +++ F +T + E L L Sbjct: 354 MRKAEESGVKLSYDSAFFIAQKIRSNVRELEGALKRVIANSHFTGRAITPDFVRESLKDL 413 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + K + I++IQR+VA++Y I +DLLS RR R+V RPRQVAM L+K +T S PEI Sbjct: 414 LALQ-DKLVNIDNIQRIVAEYYKIKISDLLSKRRSRSVARPRQVAMSLAKELTNHSLPEI 472 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G FG RDHTT LHA+RK++++ +TD ++++ + L R+++ Sbjct: 473 GDAFGGRDHTTALHAIRKIKELQDTDSDIREDYKQLMRILT 513 >gi|91228348|ref|ZP_01262276.1| chromosomal replication initiation protein [Vibrio alginolyticus 12G01] gi|262392783|ref|YP_003284637.1| chromosomal replication initiator protein dnaA [Vibrio sp. Ex25] gi|269965278|ref|ZP_06179399.1| chromosomal replication initiation protein [Vibrio alginolyticus 40B] gi|91188108|gb|EAS74412.1| chromosomal replication initiation protein [Vibrio alginolyticus 12G01] gi|262336377|gb|ACY50172.1| chromosomal replication initiator protein dnaA [Vibrio sp. Ex25] gi|269830079|gb|EEZ84307.1| chromosomal replication initiation protein [Vibrio alginolyticus 40B] Length = 468 Score = 494 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 154/478 (32%), Positives = 257/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL IT Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNIT 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L QE E+ R V+ P T + + S + + Sbjct: 61 RLLQEYCGGDIPNLRFEVGSRPVSAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + + S ++ + F F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AQAIAAINHRSNMNPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|261250639|ref|ZP_05943214.1| chromosomal replication initiator protein dnaA [Vibrio orientalis CIP 102891] gi|260939208|gb|EEX95195.1| chromosomal replication initiator protein dnaA [Vibrio orientalis CIP 102891] Length = 459 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 151/470 (32%), Positives = 253/470 (53%), Gaps = 23/470 (4%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I +L QE Sbjct: 1 MQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCG 59 Query: 103 RI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------LGKQTISPV 153 E+ R V P + + S + + + Sbjct: 60 NDVPSLRFEVGSRPVVAPKPAPKRTPADVAAESSAPAQLQARKPVHKTWDDDAQAIADIN 119 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ GLGKTHLL Sbjct: 120 HRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGSAY-----NPLFLYGGTGLGKTHLL 174 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 175 HAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 234 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 235 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETR 294 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 VAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 349 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 350 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKE 408 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 458 >gi|153940298|ref|YP_001389370.1| chromosomal replication initiation protein [Clostridium botulinum F str. Langeland] gi|168181116|ref|ZP_02615780.1| chromosomal replication initiator protein DnaA [Clostridium botulinum NCTC 2916] gi|170756151|ref|YP_001779627.1| chromosomal replication initiation protein [Clostridium botulinum B1 str. Okra] gi|226947223|ref|YP_002802314.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A2 str. Kyoto] gi|166201878|sp|A7G9B0|DNAA_CLOBL RecName: Full=Chromosomal replication initiator protein DnaA gi|226735793|sp|B1IDU3|DNAA_CLOBK RecName: Full=Chromosomal replication initiator protein DnaA gi|254777894|sp|C1FPH3|DNAA_CLOBJ RecName: Full=Chromosomal replication initiator protein DnaA gi|152936194|gb|ABS41692.1| chromosomal replication initiator protein DnaA [Clostridium botulinum F str. Langeland] gi|169121363|gb|ACA45199.1| chromosomal replication initiator protein DnaA [Clostridium botulinum B1 str. Okra] gi|182668171|gb|EDT80150.1| chromosomal replication initiator protein DnaA [Clostridium botulinum NCTC 2916] gi|226843194|gb|ACO85860.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A2 str. Kyoto] gi|295317477|gb|ADF97854.1| chromosomal replication initiator protein DnaA [Clostridium botulinum F str. 230613] Length = 445 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 265/474 (55%), Gaps = 32/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + + +K ++ + +W + + S+ +N + L+VP +F K +++RY Sbjct: 1 MSTHLTETWEKAINIIKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ ++ +V + +I + Sbjct: 61 DLIVNALKLLTSKKYNIDFIVTTEEKIEKNHNNEKSNI--------------------VV 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 101 NDEMSTMLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF Sbjct: 156 HLMHAIGHYILHNNPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 216 IAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + KLNI EV++++A + ++ REL+GA ++V S + Sbjct: 276 ETRMAILKK-----KADVEKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYL Sbjct: 331 SVDLASEALKDIISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYL 390 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ L+ D +L+ ++ L + I++ Sbjct: 391 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNNLKKDESLQNAIKELNKRINQ 444 >gi|170760502|ref|YP_001785336.1| chromosomal replication initiation protein [Clostridium botulinum A3 str. Loch Maree] gi|226735794|sp|B1L1K6|DNAA_CLOBM RecName: Full=Chromosomal replication initiator protein DnaA gi|169407491|gb|ACA55902.1| chromosomal replication initiator protein DnaA [Clostridium botulinum A3 str. Loch Maree] Length = 445 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 264/474 (55%), Gaps = 32/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + + +K ++ + +W + + S+ +N + L+VP +F K +++RY Sbjct: 1 MSTHLTETWEKAINIIKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ ++ +V + +I + Sbjct: 61 DLIVNALKLLTSKKYNIDFIVTTEEKIEKNHNNEKSNI--------------------VV 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 101 NDEMSTMLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF Sbjct: 156 HLMHAIGHYILHNNPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 216 IAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + KLNI EV++++A + ++ REL+GA ++V S + Sbjct: 276 ETRMAILKK-----KADVEKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYL Sbjct: 331 SVDLASEALKDIISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYL 390 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ L+ D +L+ + L + I++ Sbjct: 391 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNNLKKDESLQNAINDLNKRINQ 444 >gi|119475236|ref|ZP_01615589.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2143] gi|119451439|gb|EAW32672.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2143] Length = 479 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 162/490 (33%), Positives = 263/490 (53%), Gaps = 36/490 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ES + + L++++ + +W + L+ V ++ L P F+K W+K++YLE I Sbjct: 2 SESTWQQCNHYLRDELPSQQFNTWIRPLQA-EVHGRVIKLIAPNRFVKDWVKSKYLERIE 60 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ E + +G + + SP++ S + T S + +P F Sbjct: 61 EIVFE-LAPDEGFGVSLEICNGDKQAARHKSPALIANSSVKTTSRSSGFTSSPRASAPNF 119 Query: 155 G---------------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 G S L + F TF+EG SN++A A+ +AE Y Sbjct: 120 GNVRQQQSSPRKVEVEGAIQHQSFLMENYTFDTFVEGKSNQLARAASIQVAENTGGAY-- 177 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPLF++ VGLGKTHL+ A+ NA I+R+PN +VVYL +E F+ A++ N Sbjct: 178 ---NPLFLYGGVGLGKTHLMHAVGNAIIQRKPNAKVVYLHSERFVADMVKALQLNAINEF 234 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 K R++D LLIDD+QF GK Q EF H N+LL+ +Q++ DR P E+ L+ R+ Sbjct: 235 KRYYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTCDRYPKEINGLEERL 294 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 +SR G++V + + E R +IL + + E K+ + + +A+ + ++ REL+ Sbjct: 295 KSRFGWGLTVAVEPPELETRVAIL-----MKKAEQAKIELPADAAFFIAQRIRSNVRELE 349 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA +++ F + E+ E L L+ K++ +E+IQR VA++Y I +D++S Sbjct: 350 GALKRVIASAHFMGREIDIELIRESLKDLLALQ-DKQVSMENIQRTVAEYYKIKVSDMMS 408 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 RR R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RK++++ ETD +++ Sbjct: 409 KRRSRSVARPRQVAMALAKELTNHSLPEIGDGFGGRDHTTVLHACRKIKELEETDADIRE 468 Query: 492 EVELLKRLIS 501 + + L R ++ Sbjct: 469 DCKNLLRSLT 478 >gi|310639472|ref|YP_003944230.1| atpase involved in DNA replication initiation-like protein [Paenibacillus polymyxa SC2] gi|309244422|gb|ADO53989.1| ATPase involved in DNA replication initiation-like protein [Paenibacillus polymyxa SC2] Length = 448 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 247/473 (52%), Gaps = 30/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++ + S ++ ++ Y +WF+ K + + + +S PT F W+++RY Sbjct: 1 MDSHTSELWQQILSIIQTKLSKPSYDTWFKATKAAKLNDHSIVISAPTTFAVEWLESRYT 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + E + V+ ++ V+ Sbjct: 61 KLVGATVYEILGKHLEVKFVIEENKPAEVDLQQQ------------------PQQQPVVQ 102 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 103 EEAVSHMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 157 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +VVYL++E F F +AIRDN + ++ RNID+LLIDD+QF Sbjct: 158 HLMHAIGHYILEHNPTSKVVYLSSEKFTNEFINAIRDNRGESFRNKYRNIDILLIDDIQF 217 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 218 IAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDL 277 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + L+I E +M++A + T+ REL+GA ++V S + Sbjct: 278 ETRIAILRK-----KARAENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQDV 332 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++ +A E L ++ + K + I+DIQ V + YN+ D + +R + V PRQ+AMYL Sbjct: 333 SSHLAAEALKDIIPSSRPKMITIQDIQHQVGEFYNLRLEDFKARKRTKAVAFPRQIAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K ++ D L K + L I Sbjct: 393 SRELTDYSLPKIGEAFGGRDHTTVIHAHEKISKSIQVDQDLFKVINNLIEKIK 445 >gi|260774981|ref|ZP_05883881.1| chromosomal replication initiator protein dnaA [Vibrio coralliilyticus ATCC BAA-450] gi|260609071|gb|EEX35230.1| chromosomal replication initiator protein dnaA [Vibrio coralliilyticus ATCC BAA-450] Length = 459 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 154/470 (32%), Positives = 255/470 (54%), Gaps = 23/470 (4%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +L+ ++ ++ W + L+ + N + L P F+ W+++RYL +I +L QE Sbjct: 1 MQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVMDWVRDRYLNSINRLLQEYCG 59 Query: 103 RI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------LGKQTISPV 153 E+ R V+ P + + S + + +Q Sbjct: 60 NDIPSLRFEVGSRPVSAPKPAPKRTPADVAAESSAPAQLQARKPVHKTWDDDEQQVAEIN 119 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F+ F+EG SN++ L AA+ +A+ Y NPLF++ GLGKTHLL Sbjct: 120 HRSNVNIKHKFNNFVEGKSNQLGLAAARQVADNPGAAY-----NPLFLYGGTGLGKTHLL 174 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 175 HAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 234 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 235 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETR 294 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 VAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 349 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 350 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKE 408 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 458 >gi|322804279|emb|CBZ01829.1| DnaA DNA replication protein [Clostridium botulinum H04402 065] Length = 445 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 265/474 (55%), Gaps = 32/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + + +K ++ + +W + + S+ +N + L+VP +F K +++RY Sbjct: 1 MSTHLTETWEKAINIIKGELTEVSFNTWIKSINPISLENNSLKLAVPNDFTKGILESRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + S+ ++ +V + +I + Sbjct: 61 DLIVNALKLLTSKKYNIDFIVTTEEKIRKNHNNEKSNI--------------------VV 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 101 NDEMSTMLNPKYTFDSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F ++I+D+ + ++ RNID+LL+DD+QF Sbjct: 156 HLMHAIGHYILHNNPKSQVVYVSSEKFTNELINSIKDDKNVEFRNKYRNIDILLVDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 216 IAGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + KLNI EV++++A + ++ REL+GA ++V S + Sbjct: 276 ETRMAILKK-----KADVEKLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ +T+++ I+ IQ +VA +YN+ DL S RR R + PRQ+AMYL Sbjct: 331 SIDLASEALKDIISSKQTRQVTIDIIQEVVANYYNLKIEDLKSARRTRNIAFPRQIAMYL 390 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +T S P+IG FG RDHTTV+HA K+ L+ D +L+ ++ L + I++ Sbjct: 391 SRKLTDMSLPKIGEEFGGRDHTTVIHAYEKISNNLKKDESLQNAIKELNKRINQ 444 >gi|332996040|gb|EGK15667.1| chromosomal replication initiator protein DnaA [Shigella flexneri VA-6] Length = 444 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 147/455 (32%), Positives = 238/455 (52%), Gaps = 22/455 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L E+ + Sbjct: 1 MWIRPLQA-ELSDNTLSLYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFI 168 V S+ + +P P + S ++ + F F+ Sbjct: 60 VTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN + Sbjct: 120 EGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+L Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 234 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ Sbjct: 235 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADE 289 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-E 348 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 349 KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGG 408 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 RDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 443 >gi|110644045|ref|YP_671775.1| chromosomal replication initiator protein DnaA [Escherichia coli 536] gi|312972006|ref|ZP_07786180.1| chromosomal replication initiator protein DnaA [Escherichia coli 1827-70] gi|110345637|gb|ABG71874.1| chromosomal replication initiator protein DnaA [Escherichia coli 536] gi|310334383|gb|EFQ00588.1| chromosomal replication initiator protein DnaA [Escherichia coli 1827-70] gi|315138286|dbj|BAJ45445.1| chromosomal replication initiator protein DnaA [Escherichia coli DH1] gi|315618592|gb|EFU99178.1| chromosomal replication initiator protein DnaA [Escherichia coli 3431] gi|323161046|gb|EFZ46965.1| chromosomal replication initiator protein DnaA [Escherichia coli E128010] gi|323173320|gb|EFZ58949.1| chromosomal replication initiator protein DnaA [Escherichia coli LT-68] gi|323182497|gb|EFZ67901.1| chromosomal replication initiator protein DnaA [Escherichia coli 1357] gi|323189563|gb|EFZ74843.1| chromosomal replication initiator protein DnaA [Escherichia coli RN587/1] Length = 444 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 147/455 (32%), Positives = 238/455 (52%), Gaps = 22/455 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFI 168 V S+ + +P P + S ++ + F F+ Sbjct: 60 VTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN + Sbjct: 120 EGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+L Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 234 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ Sbjct: 235 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADE 289 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-E 348 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 349 KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGG 408 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 RDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 443 >gi|156972777|ref|YP_001443684.1| chromosomal replication initiation protein [Vibrio harveyi ATCC BAA-1116] gi|166215368|sp|A7N1E9|DNAA_VIBHB RecName: Full=Chromosomal replication initiator protein DnaA gi|156524371|gb|ABU69457.1| hypothetical protein VIBHAR_00442 [Vibrio harveyi ATCC BAA-1116] Length = 468 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 154/478 (32%), Positives = 257/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L QE E+ R VA P T + + S + + Sbjct: 61 RLLQEYCGNDVPSLRFEVGSRPVAAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AQAIADINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|304405889|ref|ZP_07387547.1| chromosomal replication initiator protein DnaA [Paenibacillus curdlanolyticus YK9] gi|304345132|gb|EFM10968.1| chromosomal replication initiator protein DnaA [Paenibacillus curdlanolyticus YK9] Length = 448 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 254/473 (53%), Gaps = 30/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++ V S ++ ++ + +WF+ K + ++ ++ PT F W+++RY Sbjct: 1 MDSHTPDMWQQVLSVIQTKLSKPSFDTWFKATKA-ELDGEVLVVTAPTTFAAEWLESRYT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + E R V+ ++ + +P + P+ + + Sbjct: 60 KLVRTTMFEFLGRQVDVKFII---------EENRAPEPAQPLPVAVQVPVASDEP----- 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F L+ ++ F TF+ G++NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 106 ---FTHLLNPKYTFDTFVIGANNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 157 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P+ +V+Y+++E F F +AIRDN + ++ RNID+LLIDD+QF Sbjct: 158 HLMHAIGHYILDHNPSTKVMYISSEKFTNEFINAIRDNRGESFRNKYRNIDVLLIDDIQF 217 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ++ ++DR P E+ +L+ R+RSR + G+ + D Sbjct: 218 LAGKDGTQEEFFHTFNALHEERKQIIISSDRTPKEIPTLEERLRSRFEWGLITDIQAPDL 277 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L I E ++++A + T+ REL+GA ++V S + Sbjct: 278 ETRIAILRK-----KAKAENLEIPNEAMVYIANQIDTNIRELEGALIRVVAYSSLINEDI 332 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++ +A E L ++ + K + I+DIQ V + Y + + + +R + V PRQ+AMYL Sbjct: 333 SSHLAAEALKDIIPSSRPKMITIQDIQHKVGEFYGLRLEEFKARKRTKAVAYPRQIAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ L+TD L K ++ L I Sbjct: 393 SRELTDYSLPKIGEAFGGRDHTTVIHAHEKITTQLKTDPDLYKILQNLTEKIK 445 >gi|332750523|gb|EGJ80932.1| chromosomal replication initiator protein DnaA [Shigella flexneri K-671] gi|332764073|gb|EGJ94310.1| chromosomal replication initiator protein DnaA [Shigella flexneri 2930-71] Length = 444 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 147/455 (32%), Positives = 237/455 (52%), Gaps = 22/455 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFI 168 V S+ + +P P + S ++ + F F+ Sbjct: 60 VTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA +A+ Y NPLF++ GLGKTHLL A+ N + R+PN + Sbjct: 120 EGKSNQLARAAACQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+L Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 234 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ Sbjct: 235 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADE 289 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-E 348 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 349 KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGG 408 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 RDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 443 >gi|269962691|ref|ZP_06177036.1| chromosomal replication initiation protein [Vibrio harveyi 1DA3] gi|269832614|gb|EEZ86728.1| chromosomal replication initiation protein [Vibrio harveyi 1DA3] Length = 468 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 154/478 (32%), Positives = 259/478 (54%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L QE E+ R VA P T + + S + + Sbjct: 61 RLLQEYCGNDVPSLRFEVGSRPVAAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AQAIANINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|330447269|ref|ZP_08310919.1| chromosomal replication initiator protein DnaA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491460|dbj|GAA05416.1| chromosomal replication initiator protein DnaA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 450 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 152/461 (32%), Positives = 251/461 (54%), Gaps = 28/461 (6%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR---IQGVEILVRS 113 W + L+ + + + L P F+ W++++YL I +L E I E+ + Sbjct: 1 MWVRPLQA-ELNDHTLTLFAPNRFVLDWVRDKYLNNINRLLNEFCGSDAPILRFEVGSKP 59 Query: 114 VALPSVEKTASSPSITKLSPI-----------NTNISKSPIILGKQTISPVFGSPLDSRF 162 V P + A +P++T + T+ +P + + + S ++ + Sbjct: 60 VTAPPPSQPAVAPTLTPAPAVETVESRLEQSAPTSYEPAPSPVQPEAQQGGYRSNVNPKH 119 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F+ F+EG SN++ L A + +A+ Y NPLF++ GLGKTHLL A+ NA Sbjct: 120 NFNNFVEGKSNQLGLAACRQVADNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIAN 174 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 R+PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF Sbjct: 175 RKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFF 234 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL Sbjct: 235 HTFNALLEGNQQIILTSDRYPREINGVEDRLKSRFGWGLTVAIEPPELETRVAIL----- 289 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 + + ED + + +EV +A+ + ++ REL+GA N+++ +F +T + E L L Sbjct: 290 MKKAEDHNIRLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDL 349 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + K + I++IQ+ VA++Y I D+LS RR R+V RPRQ+AM L+K +T S PEI Sbjct: 350 LALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQMAMALAKELTNHSLPEI 408 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 GDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 449 >gi|323155378|gb|EFZ41561.1| chromosomal replication initiator protein DnaA [Escherichia coli EPECa14] Length = 444 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 147/455 (32%), Positives = 238/455 (52%), Gaps = 22/455 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFI 168 V S+ + +P P + S ++ + F F+ Sbjct: 60 VTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNIPAPAEPTYRSNVNVKHTFDNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN + Sbjct: 120 EGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+L Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 234 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ Sbjct: 235 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADE 289 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-E 348 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 349 KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGG 408 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 RDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 443 >gi|238898807|ref|YP_002924489.1| DNA replication initiator protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466567|gb|ACQ68341.1| DNA replication initiator protein [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 454 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 150/468 (32%), Positives = 256/468 (54%), Gaps = 25/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + ++ ++ N + P F+ W++++Y++ I L Sbjct: 8 SLWQQCLARLQDELPATEFSMWIRPIQV-ELIDNTLTFYAPNRFVLDWVRDKYIDHICHL 66 Query: 97 FQEEHSR-IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + + V + + P ++ + P+ K S + SPI G V+ Sbjct: 67 LNDFSPQEVPSLRFEVGNKSSPQIDSETNRPASLKPS-----WAPSPIKSGY-----VYR 116 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S ++ + F TF+EG SN++A AA ++ Y NPLF++ GLGKTHLL A Sbjct: 117 SNVNLKNTFDTFVEGKSNQLARAAAIQVSGNPGAAY-----NPLFLYGDTGLGKTHLLHA 171 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N I + +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 172 VGNGIIAHKTKAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKE 231 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R + Sbjct: 232 RSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIAPPELETRVA 291 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 292 IL-----MKKADENNIRLPGEVAFFIAKRLRSNVRELEGALNRVMANANFTGKAITIDFV 346 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L L+ K + I++IQR VA +Y I DLLS RR R V RPRQ+AM L+K +T Sbjct: 347 RDALRDLLALQ-EKLVTIDNIQRTVAAYYKIKVADLLSKRRSRVVARPRQMAMALAKELT 405 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 406 NHSLPEIGAAFGGRDHTTVLHACRKIEQLCEESHNMKEDFSNLIRTLS 453 >gi|293393721|ref|ZP_06638029.1| DNA-directed DNA replication initiator protein [Serratia odorifera DSM 4582] gi|291423765|gb|EFE96986.1| DNA-directed DNA replication initiator protein [Serratia odorifera DSM 4582] Length = 440 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 147/451 (32%), Positives = 239/451 (52%), Gaps = 18/451 (3%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS---RIQGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L + + E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGTDAPLLRFEVGSKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPI-ILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 + + A S S T P + S ++ + F F+EG S Sbjct: 60 MVQAVSQAVAESRSAPAAPVARTAAPSRPSWDNAAPQPELSYRSNVNPKHTFDNFVEGKS 119 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+ N +VVY+ Sbjct: 120 NQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKANAKVVYM 174 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 175 HSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGN 234 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + Sbjct: 235 QQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENNIR 289 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMR 410 + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ K + Sbjct: 290 LPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EKLVT 348 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHT Sbjct: 349 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHT 408 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TVLHA RK+E++ E +K++ L R +S Sbjct: 409 TVLHACRKIEQLREESHDIKEDFSNLIRTLS 439 >gi|297582339|ref|YP_003698119.1| chromosomal replication initiator protein DnaA [Bacillus selenitireducens MLS10] gi|297140796|gb|ADH97553.1| chromosomal replication initiator protein DnaA [Bacillus selenitireducens MLS10] Length = 451 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 150/474 (31%), Positives = 255/474 (53%), Gaps = 29/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNR 88 +E N ++ V S+++ +V + +WF+ S+ + ++V P F + W++NR Sbjct: 1 ME-NLNDLWDQVLSKIEQKVSKPSFDTWFKYTVVDSIDQSSNTITVIAPNEFARDWLENR 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y +T+ E ++ P + P++ Sbjct: 60 YFSILTETLYELTGAELEARFIL--------------PKDEGSDLDFVEKNNPPVLQEDL 105 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L++++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLG Sbjct: 106 DNGETTKHMLNTKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLG 160 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + + P+ +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+ Sbjct: 161 KTHLMHAIGHYVVDHNPDAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDILLIDDI 220 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 221 QFLAGKEQTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPP 280 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 D E R +IL+ + + L+I +EV+ ++A + T+ REL+GA ++V S Sbjct: 281 DLETRIAILRK-----KAKAENLDIPKEVMNYIANQIDTNIRELEGALIRVVAYSSLINQ 335 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + A++A L ++ + KK+ IE +Q VA H+ I ++ + +R +TV PRQ+AM Sbjct: 336 DMNADLAAVALKDIIPNSKPKKVTIESVQEAVAAHFQIRVEEMKAKKRTKTVAYPRQIAM 395 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 Y+++ MT S P+IG FG RDHTTV+HA K+ ++ D L++ + + + Sbjct: 396 YMAREMTDSSLPKIGNEFGKRDHTTVIHAHEKISRLFADDEELQQHIREITEKL 449 >gi|197116403|ref|YP_002136830.1| chromosomal replication initiation protein [Geobacter bemidjiensis Bem] gi|226735813|sp|B5E7P6|DNAA_GEOBB RecName: Full=Chromosomal replication initiator protein DnaA gi|197085763|gb|ACH37034.1| chromosomal replication initiator protein DnaA [Geobacter bemidjiensis Bem] Length = 458 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 139/467 (29%), Positives = 252/467 (53%), Gaps = 14/467 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+I+ + LK + Y++W LKF + + L VP++F + W+ ++YL I + Sbjct: 2 ENIWLEAQTNLKQVLTEQTYSTWIDPLKFLGATVDTIVLEVPSSFFQKWVTDKYLAMIKE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + +E V + P A K + ++ Sbjct: 62 AISAVNGKSYQIEFHV-AEEKPEAAHEAKPEKEAKPAREKERDKDKEKEKDREKEKKELV 120 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ ++ F +F+ G SN+ A A+Q++A + Y NPLFI+ VGLGKTHL+ A Sbjct: 121 PNLNPKYTFESFVSGPSNQFAYAASQAVANKPATNY-----NPLFIYGGVGLGKTHLVNA 175 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N + + P ++ Y ++E FM +++R ++ R +DLLLIDD+QF+ GK Sbjct: 176 IGNHILAKNPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQFMAGKE 235 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + E + + Sbjct: 236 ATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGVETKVA 295 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 ILK + + +N+ ++V + +A ++ REL+G +L S +T +A Sbjct: 296 ILKKKSDMH-----AVNLPDDVALFLAEGANSNIRELEGMLIRLEAFASLTGQEITLSMA 350 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E++ ++ +T+ + +E IQ+ VA+H+ I ++L S++R++T+V PRQ+A+Y+ + +T Sbjct: 351 REVMKDII-VEKTRDITVEMIQKTVAEHFRIKVSELKSDKRIKTLVVPRQIAIYICRELT 409 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+PEIG +FG +DH+T++H+V+K+EK + D K VE +++ + Sbjct: 410 KASYPEIGEKFGGKDHSTIIHSVKKIEKQIAGDDEFKATVEDIRKKL 456 >gi|332980606|ref|YP_004462047.1| chromosomal replication initiator protein DnaA [Mahella australiensis 50-1 BON] gi|332698284|gb|AEE95225.1| chromosomal replication initiator protein DnaA [Mahella australiensis 50-1 BON] Length = 460 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 138/473 (29%), Positives = 255/473 (53%), Gaps = 17/473 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++ V + L ++ SW + +K + + + L+V FLK +++RY Sbjct: 1 MHTQADEVWYKVIAALNARLTQVSLNSWLKNVKPIGIYEHTLVLAVSNKFLKTIVESRYS 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I ++ I VEI+V K +P+ + + K + Sbjct: 61 NYIYDALKDIAPEISDVEIMVAVDDDIEEYKAQMTPNDNTPADNKQDTPKDEALSAISQ- 119 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ G+SNR A A+ ++AE Y NPLFI+ VGLGKT Sbjct: 120 ----NDTLNPKYTFDTFVIGNSNRFAHAASLAVAEAPGKAY-----NPLFIYGGVGLGKT 170 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +R++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF Sbjct: 171 HLMHAIGHRILENNPGIRLMYVTSEKFTNELINSIKDDRNEVFRNKYRNIDVLLIDDIQF 230 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q EF H N+L ++ Q++ ++DRPP ++ +L+ R+RSR + G+ + D Sbjct: 231 IANKERTQEEFFHTFNTLYETNHQIIISSDRPPKDIPTLEDRLRSRFEWGLLADIQPPDL 290 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + + + + +++L+ +A+ + ++ REL+GA +++ S + Sbjct: 291 ETRIAILRK-----KADMENIKVADDILLFIAQQIQSNIRELEGALVKIMAYASLNERNI 345 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A ++L ++ + +K+ ++ IQ++V+ ++N+ +D + +R R + PRQ+AMYL Sbjct: 346 DIDVAGDVLKDIIKDDQPQKITVDRIQKIVSNYFNMKPDDFKAKKRSRAISYPRQIAMYL 405 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT S P+IG FG RDHTTV+HA K+ +E + +K + LK+ I Sbjct: 406 CREMTDLSLPKIGEEFGGRDHTTVIHACEKIMGDMEKEPEIKLTINELKKRIQ 458 >gi|323177714|gb|EFZ63298.1| chromosomal replication initiator protein DnaA [Escherichia coli 1180] Length = 444 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 148/455 (32%), Positives = 238/455 (52%), Gaps = 22/455 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFI 168 V S+ + +P P + S ++ + F F+ Sbjct: 60 VTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNIPAPAEPTYRSNVNVKHTFDNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN + Sbjct: 120 EGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+L Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 234 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL I + ++ Sbjct: 235 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----IKKADE 289 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-E 348 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 349 KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGG 408 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 RDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 443 >gi|288550165|ref|ZP_05969496.2| hypothetical protein ENTCAN_08106 [Enterobacter cancerogenus ATCC 35316] gi|288315995|gb|EFC54933.1| DNA replication initiator protein [Enterobacter cancerogenus ATCC 35316] Length = 442 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 148/453 (32%), Positives = 242/453 (53%), Gaps = 20/453 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L + E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDVPQLRFEVGTKP 59 Query: 114 VA---LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 V +V A + +P ++S + S ++ + F F+EG Sbjct: 60 VTQTVRETVNVAAPAQVTPAPAPRVLPSTRSGWDNVPAPAEQTYRSNVNVKHTFDNFVEG 119 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VV Sbjct: 120 KSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIVARKPNAKVV 174 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 Y+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 175 YMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLE 234 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ Sbjct: 235 GNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADEND 289 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ K Sbjct: 290 IRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EKL 348 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RD Sbjct: 349 VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRD 408 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 HTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 441 >gi|1706462|sp|P49996|DNAA_VIBHA RecName: Full=Chromosomal replication initiator protein DnaA gi|1006569|gb|AAA78257.1| DnaA [Vibrio harveyi] Length = 468 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 154/478 (32%), Positives = 257/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L QE E+ R VA P T + + S + + Sbjct: 61 RLLQEYCGNDVPSLRFEVGSRRVAAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AQVIADINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|308066839|ref|YP_003868444.1| Chromosomal replication initiator protein dnaA [Paenibacillus polymyxa E681] gi|305856118|gb|ADM67906.1| Chromosomal replication initiator protein dnaA [Paenibacillus polymyxa E681] Length = 451 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 151/474 (31%), Positives = 255/474 (53%), Gaps = 30/474 (6%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 ++ + ++ + S ++ ++ Y +WF+ K + + + +S PT F W+++RY Sbjct: 3 SVDSHTSELWQQILSIIQTKLSKPSYDTWFKATKAAKLNDHSIVISAPTTFAVEWLESRY 62 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + E + V+ ++ V+ + ++ ++ Sbjct: 63 TKLVGATVYEILGKQLEVKFVIEENKPAEVDLQQ--------------QPQQQPVVHEEA 108 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +S + L+ ++ F TF+ GS NR A A+ ++AE + Y NPLF++ VGLGK Sbjct: 109 VSHM----LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGK 159 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + ++ P +VVYL++E F F +AIRDN + ++ RNID+LLIDD+Q Sbjct: 160 THLMHAIGHYILEHNPTSKVVYLSSEKFTNEFINAIRDNRGESFRNKYRNIDILLIDDIQ 219 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 220 FIAGKESTQEEFFHTFNALHEERKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPD 279 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL+ + L+I E +M++A + T+ REL+GA ++V S Sbjct: 280 LETRIAILRK-----KARAENLDIPNEAMMYIANQIDTNIRELEGALIRVVAYSSLTNQD 334 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T+ +A E L ++ + K + I+DIQ V + YN+ D + +R + V PRQ+AMY Sbjct: 335 VTSHLAAEALKDIIPSSRPKMITIQDIQHQVGEFYNLRLEDFKARKRTKAVAFPRQIAMY 394 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG FG RDHTTV+HA K+ K ++ D L K + L I Sbjct: 395 LSRELTDYSLPKIGEAFGGRDHTTVIHAHEKISKSIQVDQDLFKVINSLIEKIK 448 >gi|83309735|ref|YP_419999.1| chromosomal replication initiation protein [Magnetospirillum magneticum AMB-1] gi|82944576|dbj|BAE49440.1| ATPase [Magnetospirillum magneticum AMB-1] Length = 477 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 181/475 (38%), Positives = 282/475 (59%), Gaps = 19/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +S + V RLK++VG Y SW + + H + + V L++PT F++ W+ Y E I Sbjct: 13 AKSEWDRVKVRLKDEVGDAAYRSWLRPITLHDMSEDAVKLALPTRFMRDWVNTHYAERIR 72 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL------SPINTNISKSPIILGKQ 148 L+ E+ I+ VEI+V + SV + A+ S+ K+ +P+ + Sbjct: 73 TLWGAENPAIRNVEIVVEAARAVSVAQNAAKASVAKVVPSPAAAPVRAAAAPCAPAAAPN 132 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + G+PLD+RF F F+ G N A AA+ +AE D V NPLF++ VGLG Sbjct: 133 ADNDELGAPLDNRFTFKNFVVGKPNEFAWAAARRVAEAD-----QVSFNPLFLYGGVGLG 187 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AIA+ +R P V+YL+AE FM+RF A+R ++ K+ R++D+L+IDD+ Sbjct: 188 KTHLMHAIAHHIRERNPERSVLYLSAEKFMYRFIRALRGQDTMSFKEQFRSVDVLMIDDV 247 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H N+L+D +Q+V +AD+ PS+LE ++ R+RSR+ G+ + Sbjct: 248 QFIAGKDATQEEFFHTFNALVDQGRQIVISADKSPSDLEGIEERLRSRMACGLVADIHAT 307 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 YE+R IL S+ E + + ++V+ +A + ++ REL+GA N++V Sbjct: 308 TYELRLGILH-----SKAEQMGVLVPQKVMEFLAHKIISNVRELEGALNRVVAHSQLVGR 362 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E E+L L+ +++ IE+IQ+ VA+H+ I ++ S RR R V RPRQ+AM Sbjct: 363 AITLETTQEVLHDLLRAS-DRRITIEEIQKKVAEHFTIKLAEMSSARRSRQVARPRQIAM 421 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL+K +T RS PEIGR+FG RDHTTV+HAV+KVE++ E D ++VELL+R++ Sbjct: 422 YLAKQLTSRSLPEIGRKFGGRDHTTVMHAVKKVEELKECDQNFAEDVELLRRMLQ 476 >gi|15893299|ref|NP_346648.1| chromosomal replication initiation protein [Clostridium acetobutylicum ATCC 824] gi|38257741|sp|Q97N35|DNAA_CLOAB RecName: Full=Chromosomal replication initiator protein DnaA gi|15022818|gb|AAK77988.1|AE007513_1 DNA replication initiator protein, ATPase [Clostridium acetobutylicum ATCC 824] gi|325507408|gb|ADZ19044.1| chromosomal replication initiation protein [Clostridium acetobutylicum EA 2018] Length = 446 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 258/473 (54%), Gaps = 31/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + +K ++ + +W + + S+ + + LSVP F K ++NRY Sbjct: 1 MAAQLNELWQKTINIIKGELTEVSFNTWIKSITPISIDKDSIRLSVPNQFTKEILENRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + ++ + L+ S E+ + + N N S Sbjct: 61 DLIINSMKIITTKKYDIAFLI------SSEEALETDEDQETDTNNVNTDTS--------- 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F +F+ G+SNR A A ++AE + Y NPLFI+ VGLGKT Sbjct: 106 ----SSMLNPKYKFDSFVIGNSNRFAHAACLAVAEAPAKAY-----NPLFIYGGVGLGKT 156 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + + P +VVY+++E F ++I+D+ + ++ RN+D+LLIDD+QF Sbjct: 157 HLMQAIGHYILDNNPKAKVVYVSSEKFTNELINSIKDDKNVEFRNKYRNVDVLLIDDVQF 216 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 217 IAGKERTQEEFFHTFNALHENNKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDF 276 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + + LNI +V++++A + ++ REL+GA ++V S + Sbjct: 277 ETRIAILKK-----KADVEHLNIPNDVMVYIATQIKSNIRELEGALIRIVAFSSLTNKEI 331 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L ++++ + K++ I+ IQ +V+ ++N+ D S RR + + PRQ+AMYL Sbjct: 332 SVDLASEALKDIISSKQNKQITIDLIQDVVSSYFNLRIEDFKSARRTKNIAFPRQIAMYL 391 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ L+ D LK + + + S Sbjct: 392 SRKLTDMSLPKIGEAFGGRDHTTVIHAYEKISSALKEDDDLKYTINEITKRFS 444 >gi|110632363|ref|YP_672571.1| chromosomal replication initiation protein [Mesorhizobium sp. BNC1] gi|110283347|gb|ABG61406.1| chromosomal replication initiator protein DnaA [Chelativorans sp. BNC1] Length = 479 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 278/479 (58%), Positives = 353/479 (73%), Gaps = 16/479 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++F V ++LK ++G +VY+SWF R+K +V +SVPT FL+AWI YL+ IT L Sbjct: 2 AVFERVRAQLKARLGTEVYSSWFGRMKLAETSKGVVRISVPTAFLRAWINGHYLDLITSL 61 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP---- 152 ++ E VEI+VR+ S K P + + + + + + ++P Sbjct: 62 WKAEDPSTLKVEIVVRTATRTSPVKADVKPVPARKASGQPQQALASVGVNGARVTPLPTA 121 Query: 153 ---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 +FGSPLDSRF F +FIEG+SNRVA AA+++AE +R NPLFIHA Sbjct: 122 KADQAMRPSMFGSPLDSRFTFESFIEGASNRVAYAAARTVAE---LAAGAIRFNPLFIHA 178 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 SVGLGKTHLLQA+A AS+KR+P RVVYLTAEYFMWRFA+AIRDN AL LK+ LR+IDLL Sbjct: 179 SVGLGKTHLLQAVAAASLKRRPQSRVVYLTAEYFMWRFATAIRDNNALTLKEQLRDIDLL 238 Query: 264 LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +IDDMQFLQGK IQ+EFCHLLN LLDSA+QVV AADRP SELESL+PR++SRL GGVS+ Sbjct: 239 IIDDMQFLQGKSIQNEFCHLLNMLLDSARQVVVAADRPVSELESLEPRVKSRLNGGVSLE 298 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + DY++R ++LK RLA ++ EDP L+I EVL HVA+ VT SGREL+GAFNQLVFRHS Sbjct: 299 MLTPDYDLRLAMLKQRLACARVEDPSLDIPLEVLEHVAQVVTGSGRELEGAFNQLVFRHS 358 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 F P +T E DE+L + TGE +++RIEDIQR+VA+HYN+S+ +LLSNRR R++V+PRQ Sbjct: 359 FEPQITLERIDEILGPVCRTGEPRRVRIEDIQRIVARHYNVSKTELLSNRRTRSIVKPRQ 418 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 VAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E M D L +E+ELLKRLIS+ Sbjct: 419 VAMYLAKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIEGMSGDDKQLAQEIELLKRLISD 477 >gi|326625574|gb|EGE31919.1| chromosomal replication initiator protein DnaA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 443 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 148/454 (32%), Positives = 243/454 (53%), Gaps = 21/454 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI-------QGVEI 109 W + L+ + N + L P F+ W++++YL I L G + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNAFCGADAPQLRFEVGTKP 59 Query: 110 LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 + +++ P A + + T ++S P + S ++ + F F+E Sbjct: 60 VTQTLKTPVHNVVAPTQTTTAQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVE 119 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +V Sbjct: 120 GKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKV 174 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 VY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL Sbjct: 175 VYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALL 234 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ Sbjct: 235 EGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADEN 289 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ K Sbjct: 290 DIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EK 348 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG R Sbjct: 349 LVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGR 408 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 DHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 442 >gi|146305043|ref|YP_001185508.1| chromosomal replication initiation protein [Pseudomonas mendocina ymp] gi|145573244|gb|ABP82776.1| chromosomal replication initiator protein DnaA [Pseudomonas mendocina ymp] Length = 494 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 152/504 (30%), Positives = 250/504 (49%), Gaps = 51/504 (10%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 2 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLSRLLEL 60 Query: 97 FQE-EHSRIQGVEILVRS----------------------------VALPSVEKTASSPS 127 E + + +L+ S + P PS Sbjct: 61 LGERAGGLVPALSLLIGSKRAATARVAPTAPLPAAARAAQVQAAATASKPVPPPAQEEPS 120 Query: 128 ITKLSPINTNISKSPIILGKQTISPV--------FGSPLDSRFVFSTFIEGSSNRVALTA 179 + + P S L+ F F F+EG SN++A A Sbjct: 121 RASFDSMAGAAPQPPTPAVAPRAERTVQVEGGLKHTSYLNRTFTFDNFVEGKSNQLARAA 180 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A +A+ HGY NPLF++ VGLGKTHL+ A+ N + + PN +VVYL +E F+ Sbjct: 181 AWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLAKNPNAKVVYLHSERFVA 235 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ + Sbjct: 236 DMVKALQLNAINEFKRFYRSVDALLIDDIQFFAKKERSQEEFFHTFNALLEGGQQVILTS 295 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DR P E+E L+ R++SR G++V + + E R +IL + + + K+ + + Sbjct: 296 DRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVELPHDAAF 350 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + I++IQR Sbjct: 351 FIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSIDNIQRT 409 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 A++Y I +DLLS RR R++ RPRQVAM LSK +T S PEIG FG RDHTTVLHA R Sbjct: 410 TAEYYKIKISDLLSKRRSRSIARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACR 469 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+ ++ E+D ++++ + L R ++ Sbjct: 470 KIAELRESDADIREDYKNLLRTLT 493 >gi|295694687|ref|YP_003587925.1| chromosomal replication initiator protein DnaA [Bacillus tusciae DSM 2912] gi|295410289|gb|ADG04781.1| chromosomal replication initiator protein DnaA [Bacillus tusciae DSM 2912] Length = 450 Score = 491 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 157/474 (33%), Positives = 252/474 (53%), Gaps = 31/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ ++ S L+ Q+ P + +W + ++ N + + VP + W++ Y Sbjct: 1 MDPRAVELWEQSLSILRTQISPSTFETWLLKASPVTLDANTLVVRVPNMLARDWLERHYT 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSV--EKTASSPSITKLSPINTNISKSPIILGKQ 148 L QE I+ + VR V SV E+ AS + +P+ T+ P Sbjct: 61 P----LVQEALYTIRREPLYVRFVLPDSVPYEQPASQATAASPAPVRTHDDFPPP----- 111 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L S++ F +F+ G +NR A A ++AE S Y NPLFI+ VGLG Sbjct: 112 --------QLSSKYTFESFVVGENNRFAHAACLAVAEAPSLSY-----NPLFIYGGVGLG 158 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + +K P RVVY++ E F F +AI + ++ R++D+LL+DD+ Sbjct: 159 KTHLMQAIGHYVLKHHPEKRVVYISTEQFTNEFINAILYKTVPDFRNRYRSVDILLVDDV 218 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 219 QFLAGKEQTQEEFFHTFNTLHLEGKQIVLSSDRPPKEIPTLEDRLRSRFESGLITDIQPP 278 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 D+E R +IL+ + + L+I E+V+ +A V T+ REL+GA ++V S Sbjct: 279 DFETRVAILRK-----KAKAEGLDIGEDVISFIASKVNTNIRELEGALIRIVAYSSVVNQ 333 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +E+A E L ++N + + + DIQ+ VA+ +++ DL + +R + V PRQ+AM Sbjct: 334 DMNSELAAEALKDIINADRKQTITVSDIQKAVAEQFSLRVEDLKAKKRTKAVAFPRQIAM 393 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL++ MT S P IG FG RDHTTV+HA K+ + D L + ++ LK + Sbjct: 394 YLAREMTSLSLPRIGMEFGGRDHTTVMHAHEKIIRAQAEDPDLAELIQHLKNRL 447 >gi|289207188|ref|YP_003459254.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. K90mix] gi|288942819|gb|ADC70518.1| chromosomal replication initiator protein DnaA [Thioalkalivibrio sp. K90mix] Length = 455 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 152/471 (32%), Positives = 245/471 (52%), Gaps = 19/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++T RL+ +V +W + L + L P F+ +++ L + Sbjct: 1 MTANTLWTACLDRLQGRVSEQQLNTWLRPLHAEE-EAGALRLLAPNQFVFEHVRDHLLSS 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + E + + + + E TA+ P + S + + K + Sbjct: 60 IEEAVSELRPGTEETDRQRVRLGIGGTEWTAAEPEGSAPSRAPASAPARRAAVPKGPV-- 117 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F F TF+EG SN++A A+ +AE Y NPLFI+ VGLGKTHL Sbjct: 118 ---SNLNPAFTFDTFVEGKSNQLARAASLQVAENPGVAY-----NPLFIYGGVGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI N+ + R P R++YL +E F+ A++ N + K R D LLIDD+QF Sbjct: 170 MHAIGNSILSRLPEGRIIYLHSERFVADMIKALQHNAIDDFKQHYRTADALLIDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+LL+ +Q++ +DR P E+E L+ R++SR G+++ + + E Sbjct: 230 NKERSQEEFFHTFNALLEGQQQIILTSDRYPKEVEGLEERLKSRFGWGLTIAIEPPELET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E + + EV + + + ++ REL+G+ +++ F +T Sbjct: 290 RVAILQR-----KAEQAGIELPTEVAFFMGKRIRSNIRELEGSLRRVIANAHFTGKPITL 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + A E L L+ K + +E+IQ+ VA +Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 345 DFAKEALRDLLAVQ-NKLITLENIQKTVADYYRIKVADLLSTRRSRSVARPRQMAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG+ FG RDHTTV+HA RK+ ++ E D +L ++ L R +S Sbjct: 404 ELTQHSLPEIGQAFGGRDHTTVIHACRKIVELREADASLDEDYANLLRTLS 454 >gi|327482925|gb|AEA77332.1| Chromosomal replication initiator protein DnaA [Vibrio cholerae LMA3894-4] Length = 458 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 252/469 (53%), Gaps = 22/469 (4%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L E Sbjct: 1 MQRLQEELPAAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNINRLLMEFSG 59 Query: 103 RI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII-----LGKQTISPVF 154 E+ R V P ++ + S +++ I Sbjct: 60 NDVPNLRFEVGSRPVVAPKPVPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSAAADITH 119 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ GLGKTHLL Sbjct: 120 RSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLLH 174 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA + PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 AVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 234 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 235 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRV 294 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 AIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDF 349 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K + Sbjct: 350 VREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKEL 408 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 457 >gi|304309653|ref|YP_003809251.1| Chromosomal replication initiator protein [gamma proteobacterium HdN1] gi|301795386|emb|CBL43584.1| Chromosomal replication initiator protein [gamma proteobacterium HdN1] Length = 477 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 149/486 (30%), Positives = 256/486 (52%), Gaps = 32/486 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ +++++++ + W + L+ + + L P F+ W+ ++L I + Sbjct: 3 NALWQGCLAKMQSELPAQQFNMWIRPLQA-ELDQGTLKLLAPNRFVLDWVNEKFLSRIGE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP------------INTNISKSPI 143 L E Q ++V + + + S+ ++ + IS +P Sbjct: 62 LVAEASQGEQCPAVVVAIGSRQTGAVSRSTTISARVEAPKPAAAAPGNDWAGSQISSAPQ 121 Query: 144 ILGKQTISPVFG------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + P G + L+ F+ F+EG SN++A AA +AE Y N Sbjct: 122 VAANVHREPDLGGTVKHRTNLNGASTFNNFVEGKSNQLARAAAIQVAENPGQAY-----N 176 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLF++ VGLGKTHL+ A+ N ++++PN +VV+LT+E F+ A++ N K Sbjct: 177 PLFLYGGVGLGKTHLMHAVGNFMVEKKPNAKVVFLTSEQFVADMVKALQLNAINEFKRFY 236 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D LLIDD+QF GK Q EF H N+LL+ +Q++ DR P E+ ++ R++SR Sbjct: 237 RSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGRQMIFTCDRFPKEINGVEERLKSRF 296 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G++V + + E R +ILK + E + + ++ VA+ V ++ R+L+GA Sbjct: 297 GWGLTVAVEPPELETRVAILKK-----KAEQASIELPDDAAFFVAQRVRSNVRDLEGALK 351 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 ++ F +T E A E L L+ K++ I++IQ++VA+++ I +DL S RR Sbjct: 352 RITANQQFTGKPITVEFAKESLKDLLALQ-EKQISIDNIQKVVAEYFKIKMSDLNSKRRS 410 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RKV+++ T ++++ Sbjct: 411 RSVARPRQIAMALAKELTQHSLPEIGEAFGGRDHTTVLHACRKVKELAATAPDIREDFSN 470 Query: 496 LKRLIS 501 L R ++ Sbjct: 471 LLRSLT 476 >gi|258611656|ref|ZP_05241189.2| chromosomal replication initiator protein dnaA [Listeria monocytogenes FSL R2-503] gi|258605133|gb|EEW17741.1| chromosomal replication initiator protein dnaA [Listeria monocytogenes FSL R2-503] Length = 433 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 154/455 (33%), Positives = 255/455 (56%), Gaps = 29/455 (6%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 + Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ V Sbjct: 1 MSKPSYDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFDVRF 60 Query: 110 LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 + + E T P N + + I +GK L+ R+VF TF+ Sbjct: 61 -IDGEQEENFEYTVIKP--------NPALDEDGIEIGKHM--------LNPRYVFDTFVI 103 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N +V Sbjct: 104 GSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDNAKV 158 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLL 288 +YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N+L Sbjct: 159 MYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLY 218 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + + Sbjct: 219 DEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRK-----KAKAD 273 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 L+I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + +++ Sbjct: 274 GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSSKSQ 333 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 + I IQ V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG FG R Sbjct: 334 VITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEFGGR 393 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 DHTTV+HA K+ ++L+TD LK ++ +++ + + Sbjct: 394 DHTTVIHAHEKISQLLKTDQVLKNDLAEIEKNLRK 428 >gi|326202772|ref|ZP_08192639.1| chromosomal replication initiator protein DnaA [Clostridium papyrosolvens DSM 2782] gi|325986849|gb|EGD47678.1| chromosomal replication initiator protein DnaA [Clostridium papyrosolvens DSM 2782] Length = 440 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 255/473 (53%), Gaps = 37/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V I+ LK ++ + +W ++ S+ N V L VP +F K +++RY Sbjct: 1 MNVQLNEIWNRTLELLKGEMTEISFNTWILTIEPISIDSNTVTLGVPADFNKGILESRYS 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I F++ R + + PS + P ++ + Sbjct: 61 YLIKNAFRQISHREYNIYFAI--------------PSQGPIKPAIQEYNEDSNM------ 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+ NR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 101 -----SFLNPKYTFDTFVIGNGNRFAHAASLAVAEAPAKAY-----NPLFLYGGVGLGKT 150 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + + P L+V+Y+++E F +AIRD+ + RNID+LLIDD+QF Sbjct: 151 HLMHAIGHFVLGQNPALKVLYVSSEKFTNELINAIRDDKNEEFRYKYRNIDVLLIDDIQF 210 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK + EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 211 IGGKERTEEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLIADIAPPDL 270 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + + L++ ++V++ +A V ++ REL+GA N+++ + I+ Sbjct: 271 ETRIAILRK-----KAQLENLDVPDDVMVFIADKVGSNIRELEGALNRVIAYSTLTENIM 325 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A E L ++N + + + IQ V++++++ ++L S +R R V PRQ+AM+L Sbjct: 326 NVDMAVEALKDMLNNSKAVIINSKTIQEAVSRYFHLKTDELKSKKRSRDVSFPRQIAMHL 385 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT S P+IG FG RDHTTV+HA K+ LE L++ VE +K+ I+ Sbjct: 386 CREMTDMSLPKIGDEFGGRDHTTVIHACEKINHDLENSAELRRTVEDIKKNIT 438 >gi|253698657|ref|YP_003019846.1| chromosomal replication initiation protein [Geobacter sp. M21] gi|259645251|sp|C6E7Q5|DNAA_GEOSM RecName: Full=Chromosomal replication initiator protein DnaA gi|251773507|gb|ACT16088.1| chromosomal replication initiator protein DnaA [Geobacter sp. M21] Length = 460 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 138/468 (29%), Positives = 251/468 (53%), Gaps = 14/468 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+I+ + LK + Y++W LKF + + L VP++F + W+ ++YL I + Sbjct: 2 ENIWLEAQTNLKQVLTEQTYSTWIDPLKFLGATVDTIVLEVPSSFFQKWVTDKYLAMIKE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSV-EKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + +E V + E+ + K+ Sbjct: 62 AISAVNGKSYQIEFHVADEKPEAAPEEKPEKEGKPAREKEKDKDKEKEKDREKEKDKKEL 121 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ ++ F +F+ G SN+ A A+Q++A + Y NPLFI+ VGLGKTHL+ Sbjct: 122 VPNLNPKYTFESFVSGPSNQFAYAASQAVANKPATNY-----NPLFIYGGVGLGKTHLVN 176 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + P ++ Y ++E FM +++R ++ R +DLLLIDD+QF+ GK Sbjct: 177 AIGNHILAKNPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQFMAGK 236 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + E + Sbjct: 237 EATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPGVETKV 296 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +ILK + + +N+ ++V + +A ++ REL+G +L S +T + Sbjct: 297 AILKKKSDMH-----AVNLPDDVALFLAEGANSNIRELEGMLIRLEAFASLTGQEITLSM 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E++ ++ +T+ + +E IQ+ VA+H+ I ++L S++R++T+V PRQ+A+Y+ + + Sbjct: 352 AREVMKDII-VEKTRDITVEMIQKTVAEHFRIKVSELKSDKRIKTLVVPRQIAIYICREL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S+PEIG +FG +DH+T++H+V+K+EK + D K VE +++ + Sbjct: 411 TKASYPEIGEKFGGKDHSTIIHSVKKIEKQMAGDDEFKASVEDIRKKL 458 >gi|323496927|ref|ZP_08101955.1| chromosomal replication initiation protein [Vibrio sinaloensis DSM 21326] gi|323318001|gb|EGA70984.1| chromosomal replication initiation protein [Vibrio sinaloensis DSM 21326] Length = 468 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 153/478 (32%), Positives = 257/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L QE E+ R VA P + + S + + Sbjct: 61 RLLQEYCGNDIPSLRFEVGSRPVAAPKPAPKRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AQAIADINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGSAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|163802133|ref|ZP_02196028.1| chromosomal replication initiation protein [Vibrio sp. AND4] gi|159173938|gb|EDP58748.1| chromosomal replication initiation protein [Vibrio sp. AND4] Length = 468 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 152/478 (31%), Positives = 257/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRIQ---GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L QE E+ R VA P T + + S + + Sbjct: 61 RLLQEHCGHDLPNLRFEVGSRPVAAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AQAIANINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + E ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEAHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK++++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIQQLREESHDIKEDYSNLIRTLS 467 >gi|84684521|ref|ZP_01012422.1| chromosomal replication initiation protein [Maritimibacter alkaliphilus HTCC2654] gi|84667500|gb|EAQ13969.1| chromosomal replication initiation protein [Rhodobacterales bacterium HTCC2654] Length = 455 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 179/464 (38%), Positives = 284/464 (61%), Gaps = 14/464 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V RL+ VG + Y +W + L+F+ + + VPTNF+ W++ + E I + Sbjct: 2 WGQVRERLERSVGQNNYRNWIEPLEFNDLDGGVATFLVPTNFMGNWVQRNFGEQILQHMV 61 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 +R+ +E +V V + + +P N + P + G+PL Sbjct: 62 NAGARVSRLEFVVPRVG------ETNRAAAADEAPAPANGNARPAAAKSGAGDDLPGAPL 115 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 116 DKRFTFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHAIAH 170 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 +RQP LRV+YL+AE FM+RF A+RD ++ K R++D+L++DD+QF+ GK Q Sbjct: 171 EMTERQPQLRVLYLSAEQFMYRFVQALRDKQMMDFKHMFRSVDVLMVDDVQFIAGKDSTQ 230 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D KQ++ +ADR P E++ L+ RI+SRLQ G+ V L DYE+R +L+ Sbjct: 231 EEFFHTFNALIDQNKQIIISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGVLQ 290 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 +++A ++ P L+I + VL +A +TT+ R L+GA +L S +T + A E Sbjct: 291 SKVAAYRETYPDLSIADGVLEFLAHRITTNVRVLEGALMRLFAFASLVGGEITLDRAQEC 350 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ ++ +K+ +E+IQR VA+HY I +DL+ +R+R++ RPRQVAM LSK +T RS Sbjct: 351 LTDVLRAS-DRKVTVEEIQRKVAEHYGIRLSDLIGPKRLRSIARPRQVAMKLSKDLTTRS 409 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +P+IGRRFG RDH+TV+HAV++VE+++ TD + ++V+LL++ + Sbjct: 410 YPDIGRRFGGRDHSTVMHAVKRVEELVSTDHQIAEDVDLLRKAL 453 >gi|269137359|ref|YP_003294059.1| DNA replication initiation ATPase [Edwardsiella tarda EIB202] gi|267983019|gb|ACY82848.1| ATPase involved in DNA replication initiation [Edwardsiella tarda EIB202] gi|304557460|gb|ADM40124.1| Chromosomal replication initiator protein dnaA [Edwardsiella tarda FL6-60] Length = 440 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 151/451 (33%), Positives = 246/451 (54%), Gaps = 18/451 (3%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR---IQGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L + + E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDAPVLRFEVGSKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFVFSTFIEGSS 172 VA +V ASS + + T+ P + + S ++ + F F+EG S Sbjct: 60 VAPAAVSSAASSGVSVAPAAVRTSSPARPSWERVTAQPELSYRSNVNPKHTFDNFVEGKS 119 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ Sbjct: 120 NQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYM 174 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 175 HSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGN 234 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + Sbjct: 235 QQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIR 289 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMR 410 + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ K + Sbjct: 290 LPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EKLVT 348 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHT Sbjct: 349 IDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHT 408 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TVLHA RK+E++ E +K++ L R +S Sbjct: 409 TVLHACRKIEQLREESHDIKEDFSNLIRTLS 439 >gi|330500915|ref|YP_004377784.1| chromosomal replication initiation protein [Pseudomonas mendocina NK-01] gi|328915201|gb|AEB56032.1| chromosomal replication initiation protein [Pseudomonas mendocina NK-01] Length = 494 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 152/504 (30%), Positives = 251/504 (49%), Gaps = 51/504 (10%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 2 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLSRLLEL 60 Query: 97 FQE-EHSRIQGVEILVRS----------------------------VALPSVEKTASSPS 127 E + + +L+ S V+ P PS Sbjct: 61 LGERAGGLVPALSLLIGSKRAATARVAPTAPLPAAARAAQVQAAAAVSKPLPPPVQEEPS 120 Query: 128 ITKLSPINTNISKSPIILGKQTISPV--------FGSPLDSRFVFSTFIEGSSNRVALTA 179 + + + P S L+ F F F+EG SN++A A Sbjct: 121 RASFDSMAGSAPQPPTPAVAPRTERTVQVEGGLKHTSYLNRTFTFDNFVEGKSNQLARAA 180 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A +A+ HGY NPLF++ VGLGKTHL+ A+ N + + PN +VVYL +E F+ Sbjct: 181 AWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLAKNPNAKVVYLHSERFVA 235 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ + Sbjct: 236 DMVKALQLNAINEFKRFYRSVDALLIDDIQFFAKKERSQEEFFHTFNALLEGGQQVILTS 295 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 296 DRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAF 350 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + I++IQR Sbjct: 351 FIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSIDNIQRT 409 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 A++Y I DLLS RR R++ RPRQVAM LSK +T S PEIG FG RDHTTVLHA R Sbjct: 410 TAEYYKIKITDLLSKRRSRSIARPRQVAMALSKELTNHSLPEIGVAFGGRDHTTVLHACR 469 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+ ++ +D ++++ + L R ++ Sbjct: 470 KIAELRGSDADIREDYKNLLRTLT 493 >gi|323493781|ref|ZP_08098899.1| chromosomal replication initiation protein [Vibrio brasiliensis LMG 20546] gi|323311915|gb|EGA65061.1| chromosomal replication initiation protein [Vibrio brasiliensis LMG 20546] Length = 468 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 153/478 (32%), Positives = 258/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L QE E+ R VA P+ + + S + + Sbjct: 61 RLLQEYCGNDVPSLRFEVGSRPVAAPTPAPKRTPADVAAESSAPAQLQARKPVHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AEAIADINHRSNVNPKHKFTNFVEGKSNQLGLAAARQVSDNPGSAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|56459113|ref|YP_154394.1| DNA replication initiation ATPase [Idiomarina loihiensis L2TR] gi|61212492|sp|Q5QY39|DNAA_IDILO RecName: Full=Chromosomal replication initiator protein DnaA gi|56178123|gb|AAV80845.1| ATPase involved in DNA replication initiation [Idiomarina loihiensis L2TR] Length = 454 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 145/468 (30%), Positives = 246/468 (52%), Gaps = 19/468 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S++ + RL++++ + +W + L+ + + L P + W++++YL+TI Sbjct: 3 NSLWQQCAERLQSELPLQQFNTWIRPLQA-KLNGETLTLFAPNIYSVDWVRDKYLKTINT 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + +L A P+ + S N S G + F Sbjct: 62 YLEALCDDKVPNVVLKVGEASPTQRDSGSPQRAAATRRKTPNFSS-----GNTDVEVPFE 116 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S + + F F+EG SN++A AA +AE Y NPLF++ GLGKTHLL A Sbjct: 117 SNIHPEYTFDNFVEGKSNQLARAAAIQVAENPGGVY-----NPLFVYGGTGLGKTHLLHA 171 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + N + + + +V Y+ AE F+ ++IR++ K R++D LLIDD+ F K Sbjct: 172 VGNGIMAHKKDAKVFYIRAERFVQDMVNSIRNSSTNEFKRYYRSVDALLIDDIHFFANKK 231 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+LL+ +Q++ +D P E++ ++ R++SR G+++ + + E R + Sbjct: 232 GSQEEFFHTFNALLEGNQQIIMTSDLYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVA 291 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + ++ L++ EV +A+ + ++ REL+GA N++V +T + Sbjct: 292 IL-----MRKADERGLHMPHEVAFFIAKRLRSNVRELEGALNRVVANVQLTGRPITIDFV 346 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ K + I++IQ+ VA++YNI D+LS RR R+V RPRQ+AM L+K +T Sbjct: 347 REALRDLIAAQ-EKLVTIDNIQKTVAEYYNIKLADILSKRRSRSVARPRQLAMALAKELT 405 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHA RK++++ + +K++ L R +S Sbjct: 406 NHSLPEIGDAFGGRDHTTVLHACRKIQELKDAQHDIKEDYRNLIRTLS 453 >gi|323703942|ref|ZP_08115572.1| chromosomal replication initiator protein DnaA [Desulfotomaculum nigrificans DSM 574] gi|323531100|gb|EGB21009.1| chromosomal replication initiator protein DnaA [Desulfotomaculum nigrificans DSM 574] Length = 442 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 254/474 (53%), Gaps = 34/474 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ N ++++ V L+ QV + +W + K + N + + VP +F K W+ +RY Sbjct: 1 MQSNIQAMWDQVLVLLEKQVNKHSFDTWLAKCKPVAFYDNTIIIEVPDHFSKGWLADRYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + ++ + ++ ++ L + P ++ Sbjct: 61 PIIKQAYEVIAHQEVSLQFILAGQEL-----------------------EQPNKAREKAQ 97 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ R+ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 98 DETYINILNPRYTFDTFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 152 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P L+V Y T+E F ++IRD+ ++ R++D+LLIDD+QF Sbjct: 153 HLMHAIGHYILQNNPGLKVAYCTSEKFTNELINSIRDDQTEEFRNKYRSMDILLIDDIQF 212 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+ K Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + DY Sbjct: 213 LEKKERTQEEFFHTFNTLYEANKQIIISSDRPPKEIATLEDRLRSRFEWGLITDIQSPDY 272 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + NI +E + +A + ++ REL+GA ++ + Sbjct: 273 ETRVAILRKKAQLEGLS----NIPDETIAFIADKIQSNIRELEGALIRVTAFSNLEKREA 328 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E+L +++ + K + + I + VA Y I DL + +R R+V PRQVAMYL Sbjct: 329 TPALAAEVLKDVISPSKPKVITVPLIMQTVADFYGIRLEDLKAKKRTRSVAFPRQVAMYL 388 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 ++ + S P+IG FG RDHTTVLHA K+ L +D L++ ++ L++ ISE Sbjct: 389 TRELMDLSLPKIGEEFGGRDHTTVLHACDKIVADLASDPVLQETIKELRKRISE 442 >gi|327395909|dbj|BAK13331.1| chromosomal replication initiator protein DnaA [Pantoea ananatis AJ13355] Length = 445 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 150/456 (32%), Positives = 247/456 (54%), Gaps = 23/456 (5%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS---RIQGVEILVRS 113 W + L+ + N + L P F+ W++++YL +I L E + E+ R Sbjct: 1 MWIRPLQA-ELNDNTLALYAPNRFVLDWVRDKYLNSINALLNEFCGANVPLLRFEVGTRP 59 Query: 114 V------ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTF 167 V + P++ ++ + + P I + + S +++R F F Sbjct: 60 VQQAAAVSQPAMASVSAPAAPVQNRPAPAQIVRPSWDNVPAPADVTYRSNVNNRHNFDNF 119 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 +EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N I R+PN Sbjct: 120 VEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIIARKPNA 174 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 +VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+ Sbjct: 175 KVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNA 234 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + + Sbjct: 235 LLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAD 289 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGE 405 + + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 ENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ- 348 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K +T S PEIG FG Sbjct: 349 EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMAMAKELTNHSLPEIGDAFG 408 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 GRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 444 >gi|126724505|ref|ZP_01740348.1| chromosomal replication initiation protein [Rhodobacterales bacterium HTCC2150] gi|126705669|gb|EBA04759.1| chromosomal replication initiation protein [Rhodobacterales bacterium HTCC2150] Length = 460 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 183/468 (39%), Positives = 273/468 (58%), Gaps = 13/468 (2%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ V LK VG + Y +W + L+F I VPT F+ W+ + + I Sbjct: 2 SNEVWGRVCESLKGSVGNNNYVTWIKPLQFAGFDAGIATFHVPTTFMGNWVSRNFGDQIQ 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +L E V V P+ ++ SS ++ + + V Sbjct: 62 QLLMAEGLSATRVMFKV-----PTQKQAMSSIPTKSMTAKPAAPAVVKRVQPSVEKENVM 116 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+PLD+RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 117 GAPLDARFQFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMH 171 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 +IA R PNL+VVYL+AE FM+RF ++RD ++ K R++D+L++DD+QF+ GK Sbjct: 172 SIAWQLQTRTPNLKVVYLSAEQFMYRFVQSLRDRSTMDFKQIFRSVDVLMVDDVQFIAGK 231 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D +Q++ + DR PSE+ LD RI+SRLQ G+ V L DYE+R Sbjct: 232 DSTQDEFFHTFNALVDQGRQIIISGDRSPSEMNGLDDRIQSRLQSGLVVDLHPTDYELRL 291 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL+ ++ + + + L I VL +A ++T+ R L+GA +L S +T ++ Sbjct: 292 GILQQKVELYKSQYSDLVIAPGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREITMDL 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L+ ++ + +K+ I++I R VA+HYNI +D+LS RR RTV RPRQVAMYLSK + Sbjct: 352 TQDCLADILRSS-DRKVTIDEIMRKVAEHYNIRMSDMLSPRRTRTVARPRQVAMYLSKHL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS+PEIGRRFG RDHTTVLHAVRK+E++ D + +VELL+R++ Sbjct: 411 TQRSYPEIGRRFGGRDHTTVLHAVRKIEELKSIDSQISDDVELLRRML 458 >gi|90019650|ref|YP_525477.1| chromosomal replication initiation protein [Saccharophagus degradans 2-40] gi|122996680|sp|Q21PW4|DNAA_SACD2 RecName: Full=Chromosomal replication initiator protein DnaA gi|89949250|gb|ABD79265.1| chromosomal replication initiator protein DnaA [Saccharophagus degradans 2-40] Length = 524 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 164/535 (30%), Positives = 259/535 (48%), Gaps = 76/535 (14%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL-HNIVHLSVPTNFLKAWIKNRY 89 +E+ ES + S L++++ + +W + L+ N +HL P F+ W+ +++ Sbjct: 1 MEL-PESAWEQCVSSLQSELPAQQFNTWIRPLRVQQAEASNQLHLIAPNRFVLDWVNDKF 59 Query: 90 LETITKLFQEE-HSRIQGVEILV-------------------RSVALPSVEKTASSPSIT 129 I +L H I VEI V R P +S PS + Sbjct: 60 KSRIDELLSSADHHPITSVEISVAPRRSTSFETNQGVAARQKRQQEAPRQNIASSQPSNS 119 Query: 130 KLSPINTNISKSPIILGKQTISPV------------------------------------ 153 + P + + Sbjct: 120 YSRQPQQPAVEMPAESQMAQVELLPAAPPAPLNNGYNTESFAQPYNDNPMGQGKVDKVDV 179 Query: 154 -----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 S L+ F+F F+ G SN++ L AA +AE Y NPLFI+ VGLG Sbjct: 180 EGGLQHKSNLNPTFIFDNFVVGKSNQLGLAAATQVAENPGGSY-----NPLFIYGGVGLG 234 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ A+ NA R+P +VVYL +E F+ A++ N + K R++D LLIDD+ Sbjct: 235 KTHLMHAVGNALCVRKPGAKVVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDI 294 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF GK Q EF H N+LL+ +Q++ DR P E+ L+ R++SR G++V + Sbjct: 295 QFFAGKERSQEEFFHTFNALLEGGQQIILTCDRYPKEINGLEERLKSRFGWGLTVAIEPP 354 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +ILK + E + + +A+ + ++ REL+GA +++ F Sbjct: 355 ELETRVAILKR-----KAEQVGAPLPNDAAFFIAQRIRSNVRELEGALKRVIANAHFTGR 409 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 ++ E+ E L L+ + + I++IQR+VA++Y I +DL S RR R+V RPRQVAM Sbjct: 410 DISVELVREALKDLLALQ-DRLVSIDNIQRVVAEYYKIKVSDLHSKRRSRSVARPRQVAM 468 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL+K +T S PEIG FG RDHTTVLHA RK+++M+E+D ++++V+ L R ++ Sbjct: 469 YLAKDLTHHSLPEIGEAFGGRDHTTVLHACRKIKEMIESDADIREDVKNLLRTLT 523 >gi|27375941|ref|NP_767470.1| chromosomal replication initiation protein [Bradyrhizobium japonicum USDA 110] gi|38257550|sp|Q89W63|DNAA_BRAJA RecName: Full=Chromosomal replication initiator protein DnaA gi|27349079|dbj|BAC46095.1| chromosomal replication initiator protein [Bradyrhizobium japonicum USDA 110] Length = 470 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 224/474 (47%), Positives = 310/474 (65%), Gaps = 6/474 (1%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + ++ V RL++ VG D+Y SWF R+ V V LSVPT FLK+WI+ Y Sbjct: 1 MNTSEQDRWSRVKGRLRSSVGEDIYTSWFARMDLEDVQDESVRLSVPTRFLKSWIQAHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALP-SVEKTASSPSITKLSPINTNISKSPIILGKQT 149 E + +Q E + +++ VRS P + K A +P T+ +P S + + Sbjct: 61 ERVLSCWQAEMPEVHRIDLTVRSAVRPVAPPKEAPAPVETRRAPAPELRSTATAPVSANH 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + + GSPLD R F++F+ G SN +A AA+ +AE V NPL+IHA VGLGK Sbjct: 121 DA-LGGSPLDPRLTFASFVIGRSNTLAHAAARQVAE--GRRGDPVMFNPLYIHAGVGLGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLLQA+ A +V+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+Q Sbjct: 178 THLLQAVTWAGNSGN-ERKVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQ 236 Query: 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 FLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V +G Sbjct: 237 FLQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGSLGE 296 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E+R ILK+R+A ++ ++ EEVL ++ART+T +GR+L+GA N+L+ + Sbjct: 297 ELRHGILKSRVAAARAHHATFDVPEEVLHYLARTITHNGRDLEGAINRLLAHSKLNNQPV 356 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A+ + LV E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL Sbjct: 357 TLEMAEREVRDLVRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYL 416 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D L +EVE LKR + E Sbjct: 417 AKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVSKDTALSEEVESLKRQLQE 470 >gi|260771047|ref|ZP_05879975.1| chromosomal replication initiator protein dnaA [Vibrio furnissii CIP 102972] gi|260613936|gb|EEX39127.1| chromosomal replication initiator protein dnaA [Vibrio furnissii CIP 102972] gi|315178626|gb|ADT85540.1| chromosomal replication initiation protein [Vibrio furnissii NCTC 11218] Length = 468 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 151/478 (31%), Positives = 258/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++Y+ I Sbjct: 2 SSSLWLQCLQQLQEELPAAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYINNIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------L 145 +L ++ E+ R V P + ++ + S +++ I Sbjct: 61 RLLKDFCGHDVPSLRFEVGSRRVVAPKPTQKRTAADVAAESSAPAQLAQRKPIHKTWDDD 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 AANAPEITYRSNMNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM LSK +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|86139417|ref|ZP_01057986.1| chromosomal replication initiation protein [Roseobacter sp. MED193] gi|85823920|gb|EAQ44126.1| chromosomal replication initiation protein [Roseobacter sp. MED193] Length = 472 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 169/475 (35%), Positives = 275/475 (57%), Gaps = 15/475 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E + + +RL VG + + +W + L+F+SV + VPTNF+ ++ + + I Sbjct: 2 TEEKWGQLRTRLLKTVGQNNFTTWIEPLEFNSVDDGVAVFHVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSI-------TKLSPINTNISKSPIILGK 147 F +Q + V + + + P+ T + +T +S S Sbjct: 62 HEFSLSGEPVQRLAFRVAANSPARPVRQVEQPAEPFAEMQETGNTGASTGMSLSDKAAAA 121 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + +PLD RF F F+ G N +A AA+ +AE V NPL ++ VGL Sbjct: 122 APMDTLQAAPLDPRFTFDNFVVGKPNELAHAAARRVAEG-----GPVTFNPLVLYGGVGL 176 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AIA + P+L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD Sbjct: 177 GKTHLMHAIAWEITVQNPSLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDD 236 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L Sbjct: 237 VQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHP 296 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE+R IL+ ++ + Q+ P L I + VL +A ++T+ R L+GA +L S Sbjct: 297 TDYELRLGILQTKVQLQQQTYPDLEIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVG 356 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + ++ + L+ ++ +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVA Sbjct: 357 REIDMDLTQDCLADVLRAS-ERKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVA 415 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL K +T RS PEIGRRFG RDHTTV+H VR++E++ TD + ++VE+L+R + Sbjct: 416 MYLCKKLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKSTDGQIAEDVEMLRRSL 470 >gi|38257685|sp|Q8UIH1|DNAA_AGRT5 RecName: Full=Chromosomal replication initiator protein DnaA Length = 487 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 293/487 (60%), Positives = 364/487 (74%), Gaps = 20/487 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++F S+RLK QVGP+VYASWF RLK H+V ++V +VPT FLK+WI NRY++ Sbjct: 1 MMHDALFERFSARLKAQVGPEVYASWFARLKLHTVSKSVVRFTVPTTFLKSWINNRYMDL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALP--SVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT L Q E + VEILVRS + P + + + ++ N S P Sbjct: 61 ITSLVQSEDPDVLKVEILVRSASRPVRPAQTEERAQPVQEVGAAPRNKSFIPSQSATAPA 120 Query: 151 S---------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + P+FGSPLD+RF F TF+EGSSNRVAL AA++IAE G VR Sbjct: 121 AQPMAAQATLRQGGSGPLFGSPLDTRFTFDTFVEGSSNRVALAAAKTIAEA---GAGAVR 177 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLFIHA VGLGKTHLLQAIANA+I N RVVYLTAEYFMWRFA+AIRDN AL LKD Sbjct: 178 FNPLFIHAGVGLGKTHLLQAIANAAIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKD 237 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 +LRNIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSR Sbjct: 238 TLRNIDLLVIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSR 297 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 LQGG+++ + DY+MR+ +L R+ ++++DP I++E+L HVA++VT SGREL+GAF Sbjct: 298 LQGGMAIEIEGPDYDMRYEMLNRRMGSARQDDPSFEISDEILTHVAKSVTASGRELEGAF 357 Query: 376 NQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 NQL+FR SF P L+ + DELLSHLV +GE K++RIEDIQR+VA+HYN+SR +L+SNRR Sbjct: 358 NQLMFRRSFEPNLSVDRVDELLSHLVGSGEAKRVRIEDIQRIVARHYNVSRQELVSNRRT 417 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V+PRQ+AMYL+K++TPRSFPEIGRRFG RDHTTVLHAVRK+E ++ D L EVEL Sbjct: 418 RVIVKPRQIAMYLAKMLTPRSFPEIGRRFGGRDHTTVLHAVRKIEDLISGDTKLGHEVEL 477 Query: 496 LKRLISE 502 LKRLI+E Sbjct: 478 LKRLINE 484 >gi|222150251|ref|YP_002559404.1| chromosomal replication initiation protein DnaA [Macrococcus caseolyticus JCSC5402] gi|254777906|sp|B9E8Z7|DNAA_MACCJ RecName: Full=Chromosomal replication initiator protein DnaA gi|222119373|dbj|BAH16708.1| chromosomal replication initiation protein DnaA [Macrococcus caseolyticus JCSC5402] Length = 445 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 152/469 (32%), Positives = 268/469 (57%), Gaps = 30/469 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++I+ V + +K+++ P Y +WF+ K + ++ V + PT+F+ W++ Y++ I Sbjct: 4 IDTIWEKVLANIKHRLAPASYDTWFKETKIKVLNNHQVVIQAPTSFISEWLQTNYIDFIQ 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + F EE +++ I+ + N ++P+ +QT + Sbjct: 64 EAFIEEIGEKLNIKV------------------ISSEDELMNNEKEAPVRKTQQTSQELL 105 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L++ F TF+ GS NR + A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 106 PNQLNTDNTFDTFVIGSGNRFSHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMH 160 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ + N +VVY+++E FM F ++I+DN + RN+D+LLIDD+QFL GK Sbjct: 161 AIGHYVMEHKENAKVVYISSEKFMNEFINSIKDNKTEEFRSKYRNVDVLLIDDIQFLAGK 220 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N L + KQ+V ++DR P E+ +L+ R+R+R + G+ + D E R Sbjct: 221 ESTQEEFFHTFNELHQNHKQIVISSDRAPKEIPTLEERLRTRFEWGLITDVTPPDLETRI 280 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL+ + E+ ++I E ++++A + ++ REL+GA ++ L +++ Sbjct: 281 AILRK-----KSEEENIDIPNEAMLYIATQIQSNIRELEGALTRVSAYSKLVNRELNSDL 335 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L ++ T + KK+ I+DIQ V ++YN+ D + +R +++ PRQ+AMYL++ + Sbjct: 336 VAEALKDIIATSKPKKVTIKDIQLAVGEYYNVRLEDFSAKKRTKSIAFPRQIAMYLAREL 395 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG RDHTTV+HA K++ LETD +LK E++ +++ I+ Sbjct: 396 TDFSLPKIGEEFGGRDHTTVIHAHEKIKNQLETDESLKNELKNIEKDIT 444 >gi|313902784|ref|ZP_07836181.1| chromosomal replication initiator protein DnaA [Thermaerobacter subterraneus DSM 13965] gi|313466904|gb|EFR62421.1| chromosomal replication initiator protein DnaA [Thermaerobacter subterraneus DSM 13965] Length = 460 Score = 488 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 151/475 (31%), Positives = 250/475 (52%), Gaps = 18/475 (3%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 ++ ++ ++ Q+ Y +W + + S+ + L+VP F + W+ R Sbjct: 1 MVKGELAEVWAEALQLIERQLTRPSYEAWLRNTRPLSLEDGRLVLAVPNQFARDWVLERC 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I + +E++V P+ + A++ S L+P + +T Sbjct: 61 STAIVDSLRRVLGHDVRLEVVVEPQPAPAAGQVAAT-SEAALAPGTPAGPAADAGSSWRT 119 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +S PL+ ++ F TF+ GS NR+ A + NPLFI+ VGLGK Sbjct: 120 LSQ----PLNPKYTFETFVTGSGNRL-----AHAAALAVAEAPARTYNPLFIYGGVGLGK 170 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QA+A+ +++ RV Y++ E F +AIRD L ++ RN+D+LL+DD+Q Sbjct: 171 THLMQAVAHHVLRKH-GSRVAYVSCETFTNEMINAIRDGKTLEFRNRYRNVDVLLVDDIQ 229 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK Q EF H N+L ++ +Q+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 230 FLAGKESTQEEFFHTFNALHEANRQIVISSDRPPKEIPTLEERLRSRFEWGLISDIQPPD 289 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 +E R +IL+ + + KL + ++V+ +A + T+ REL+GA +LV S Sbjct: 290 FETRVAILRK-----KAQLEKLRVPDDVIAFIAERIDTNIRELEGALIRLVAFASLTNHE 344 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++A E+L ++ K+ I IQ +VA++Y + DL + RR R + PRQVAMY Sbjct: 345 IDLDLAAEVLKDILPPPRANKVTIARIQEVVAEYYGVKVRDLKARRRTRAIAFPRQVAMY 404 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P IG FG RDHTTVLHA K+ + + D L ++V+ L LI + Sbjct: 405 LCRELTEASLPRIGEEFGGRDHTTVLHAYEKISQDVRNDPQLGRQVKELMELIRK 459 >gi|303240057|ref|ZP_07326578.1| chromosomal replication initiator protein DnaA [Acetivibrio cellulolyticus CD2] gi|302592326|gb|EFL62053.1| chromosomal replication initiator protein DnaA [Acetivibrio cellulolyticus CD2] Length = 443 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 258/472 (54%), Gaps = 34/472 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V ++ L+N++ + +W + ++ S+ +N ++L+VP F K +++RY Sbjct: 1 MSVQLSDLWQKTLGLLQNELTEISFNTWIKTIEPLSLYNNTLNLAVPAEFNKGILESRYS 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I ++ + + +V P NI K + Sbjct: 61 ALIKNAIKQTTYKEYTINFVV---------------------PSQENIDKY-TNQAEANN 98 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 99 EDTLVSVLNPKYTFDTFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 153 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + +K+ P+L+V+Y+++E F +AI+D+ + RNID+LLIDD+QF Sbjct: 154 HLMHAIGHFVLKQNPSLKVLYVSSEKFTNELINAIKDDKNEEFRSKYRNIDILLIDDIQF 213 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++D+ P E+ +L+ R+RSR + G+ + D Sbjct: 214 IAGKERTQEEFFHTFNALYEANKQIILSSDKSPKEIVTLEDRLRSRFEWGLIADMQAPDI 273 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + + L++ E+++ +A + ++ REL+GA N+++ S + Sbjct: 274 ETRIAILRK-----KAQLENLDVPNEIMVFIAEKIASNIRELEGALNRVIAYSSLTENDI 328 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A E L +++T + + + IQ VA+++++ +D S RR R V PRQ+AM+L Sbjct: 329 TVDLATEALKDILSTSKVRAINCNTIQDAVARYFDLRPDDFKSKRRSRDVAYPRQIAMFL 388 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ + ++++ ++ + LK+ + Sbjct: 389 CRELTDMSLPKIGNAFGGRDHTTVIHACEKIVEEVQSNSETRRAINELKKNL 440 >gi|312882235|ref|ZP_07741981.1| chromosomal replication initiation protein [Vibrio caribbenthicus ATCC BAA-2122] gi|309370079|gb|EFP97585.1| chromosomal replication initiation protein [Vibrio caribbenthicus ATCC BAA-2122] Length = 468 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 152/478 (31%), Positives = 258/478 (53%), Gaps = 23/478 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + + + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDSTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 +L QE E+ R VA+ + + S + + Sbjct: 61 RLLQEYCGNDIPSLRFEVGSRPVAVAKTAPKRTPADVAAESSAPAQLQARKSVHKTWEND 120 Query: 152 P------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 P S ++ + +F+ F+EG SN++ L AA+ +++ Y NPLF++ Sbjct: 121 PETLVDINHRSNVNPKHMFNNFVEGKSNQLGLAAAKQVSDNPGSAY-----NPLFLYGGT 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++D LLI Sbjct: 176 GLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 235 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 236 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAI 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F Sbjct: 296 EPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANF 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 351 TGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 410 LAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 467 >gi|156936082|ref|YP_001439998.1| hypothetical protein ESA_03976 [Cronobacter sakazakii ATCC BAA-894] gi|156534336|gb|ABU79162.1| hypothetical protein ESA_03976 [Cronobacter sakazakii ATCC BAA-894] Length = 438 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 147/450 (32%), Positives = 241/450 (53%), Gaps = 18/450 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR---IQGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L + + E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDAPLLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 +A + AS + + P + S ++ + F F+EG SN Sbjct: 60 LAT-ATTAPASQAVKPAQAAPAAAPVRPAWDNVPAPAEPSYRSNVNVKHTFDNFVEGKSN 118 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ Sbjct: 119 QLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMH 173 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ + Sbjct: 174 SERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQ 233 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + + Sbjct: 234 QIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRL 288 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 EV +A+ + ++ REL+GA N+++ +F +T + E L L+ K + I Sbjct: 289 PGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EKLVTI 347 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 ++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTT Sbjct: 348 DNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTT 407 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHA RK+E++ E +K++ L R +S Sbjct: 408 VLHACRKIEQLREESHDIKEDFSNLIRTLS 437 >gi|308095436|ref|ZP_05905896.2| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus Peru-466] gi|308087878|gb|EFO37573.1| chromosomal replication initiator protein DnaA [Vibrio parahaemolyticus Peru-466] Length = 443 Score = 487 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 150/454 (33%), Positives = 246/454 (54%), Gaps = 23/454 (5%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 +L+ ++ ++ W + L+ + N + L P F+ W++++YL +IT+L QE Sbjct: 1 MQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSITRLLQEYCG 59 Query: 103 RI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP------V 153 E+ R V+ P T + + S + + P Sbjct: 60 NDIPNLRFEVGSRPVSAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDDPQAIAAIN 119 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S ++ + F F+EG SN++ L AA+ +++ Y NPLF++ GLGKTHLL Sbjct: 120 HRSNMNPKHKFDNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLL 174 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ NA + PN +VVY+ +E F+ A+++N K R++D LLIDD+QF Sbjct: 175 HAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFAN 234 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 235 KERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETR 294 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 VAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITID 349 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K Sbjct: 350 FVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKE 408 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 +T S PEIG FG RDHTTVLHA RK+E++ E Sbjct: 409 LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE 442 >gi|146276060|ref|YP_001166219.1| chromosomal replication initiation protein [Rhodobacter sphaeroides ATCC 17025] gi|145554301|gb|ABP68914.1| chromosomal replication initiator protein DnaA [Rhodobacter sphaeroides ATCC 17025] Length = 461 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 178/465 (38%), Positives = 273/465 (58%), Gaps = 21/465 (4%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +R E+ E+ + V L +VG + + +W + L+ + + VPT F W++ Sbjct: 4 ERAQEMTNET-WVQVREGLLKRVGRNNFVTWIEPLRLMGLDDGVARFEVPTLFFGDWVQR 62 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + + I E S ++ +E V + P +++ + T + Sbjct: 63 NFADHIRLRLTEAGSPVERLEFAVSNSPRPPLKE------------VRTAAAPVAKARPA 110 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + G+PLDSRF F +F+ G N +A AA+ +AE V NPLF++ VGL Sbjct: 111 PAEEDLRGAPLDSRFTFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGL 165 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AIA+ KRQP RV+YL+AE FM+RF A+R+ L K+ R++D+L++DD Sbjct: 166 GKTHLMHAIAHELQKRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDD 225 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L Sbjct: 226 VQFIAGKDSTQEEFFHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHP 285 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE+R IL+ + +++ L I + VL +A +TT+ R L+GA +L S Sbjct: 286 TDYELRLGILQQKADFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVG 345 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T ++A + L+ ++ +K+ IE+IQR VA+HYNI +D++ +R+RT+ RPRQVA Sbjct: 346 REITLDLAQDCLADILRAS-DRKVTIEEIQRKVAEHYNIRLSDMIGPKRLRTIARPRQVA 404 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 MYL+K +TPRS PEIGRRFG RDHTT++H VRK+E+++ TD L Sbjct: 405 MYLAKHLTPRSLPEIGRRFGGRDHTTIMHGVRKIEELMATDSQLA 449 >gi|88798539|ref|ZP_01114123.1| chromosomal replication initiation protein [Reinekea sp. MED297] gi|88778639|gb|EAR09830.1| chromosomal replication initiation protein [Reinekea sp. MED297] Length = 495 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 167/507 (32%), Positives = 262/507 (51%), Gaps = 54/507 (10%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++++ +L++++ + +W + L ++ L P F+ W++++YLE I Sbjct: 2 LDTVWQQCLDQLRSELPSHQFNTWLKPLGLSEQAEALL-LCAPNRFIANWVRDKYLERI- 59 Query: 95 KLFQEEHSRIQGVEILVRS----------------------VALPSVEKTASSPSITKLS 132 ++ E + V I VRS V A SPS ++ Sbjct: 60 QVIAEGYGYDGQVAIEVRSKGASRSFTSTRSDTNDTSRSAPVVSVEAPAVAESPSTSESM 119 Query: 133 PINTNISKSPIILGKQTISPVFG----------------SPLDSRFVFSTFIEGSSNRVA 176 P +T ++ S + + P G S L+ F F +F+EG SN++A Sbjct: 120 P-DTGVAGSSTDTARSVVVPSEGVEVKTTGSSRGRNKVQSYLNKAFTFQSFVEGKSNQLA 178 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 L A+Q +AE Y NPLFI+ VGLGKTHL+QAI N I P +VVYL +E Sbjct: 179 LAASQQVAENAGGAY-----NPLFIYGGVGLGKTHLMQAIGNEIIANNPTAKVVYLHSER 233 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 234 FVADMVKALQLNAMAEFKRFYRSLDALLIDDIQFFAKKDRSQEEFFHTFNALLEGNQQVI 293 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 DR P E++ L+ R++SR G++V + D E R +IL + + E K+ + E Sbjct: 294 LTCDRFPKEIDGLEDRLKSRFGWGLTVAVEPPDLETRVAIL-----MKKAEQAKVKLPAE 348 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ F + + E L L+ K++ I++I Sbjct: 349 SAFFIAQRIRSNVRELEGALKRVIANAQFIGAPIDTALVKEALKDLLALQ-DKQVSIDNI 407 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DL S RR R++ RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 408 QRTVAEYYKIKISDLHSKRRSRSIARPRQVAMALSKELTQHSLPEIGDAFGGRDHTTVLH 467 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RKV+++ ET+ ++++ L R ++ Sbjct: 468 ACRKVKELRETNQDIREDYSNLLRTLT 494 >gi|220930851|ref|YP_002507759.1| chromosomal replication initiator protein DnaA [Halothermothrix orenii H 168] gi|219992161|gb|ACL68764.1| chromosomal replication initiator protein DnaA [Halothermothrix orenii H 168] Length = 463 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 156/471 (33%), Positives = 265/471 (56%), Gaps = 23/471 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 I+ S++K ++ + +WF + HS+++N + + VP +F+K W+++RYLE I Sbjct: 8 LNHIWQETLSKIKEKLSNPSFRTWFSDTEAHSLVNNQLIVKVPNDFIKDWLESRYLELIE 67 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ + + + ++ K + N S I + Sbjct: 68 EVIKNLTNSNWKIVLMSPEELDELDNKDRARVETRDKVKSKNNKKNSNIEIP-------- 119 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ ++ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+Q Sbjct: 120 -NGLNPKYTFDTFVVGNSNRFAHAASLAVAEAPARAY-----NPLFIYGDVGLGKTHLMQ 173 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA+ + P+ +VVY+++E F +AI+D+ + ++ RNID+LL+DD+QFL GK Sbjct: 174 AIAHFILDHNPDKKVVYVSSETFTNELINAIKDDRTVEFRNKYRNIDILLVDDIQFLAGK 233 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H NSL ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 234 ERTQEEFFHTFNSLHEANKQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDLETRI 293 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL+ + + L + EV++++A + ++ REL+GA +++ S + ++ Sbjct: 294 AILRK-----KADLEDLEVPNEVIIYIANKIQSNIRELEGALIKVIAYSSLVNREIDIDL 348 Query: 393 ADELLSHLV--NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A E L LV + K++ I+ I+++VA +YN++ D+ S +R + + PRQ+AMYLS+ Sbjct: 349 AQEALKDLVAKDNNAPKQITIDHIKKVVADYYNLTIEDMDSKKRTQNIAFPRQIAMYLSR 408 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG FG RDHTTV+HA KV K E D+ KK ++ L I Sbjct: 409 ELTSSSLPQIGENFGGRDHTTVIHAHNKVTKKYEDDLDFKKMIDKLVEKIK 459 >gi|307543590|ref|YP_003896069.1| chromosomal replication initiation protein [Halomonas elongata DSM 2581] gi|307215614|emb|CBV40884.1| chromosomal replication initiation protein [Halomonas elongata DSM 2581] Length = 488 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 153/495 (30%), Positives = 257/495 (51%), Gaps = 41/495 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSV-LHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ + L++++ + +W + L+ N + L P F++ W+ ++Y + I++ Sbjct: 4 ALWQQCLATLQDELSSQQFNTWIRPLQAEEEGESNQLRLLAPNRFVRDWVSDKYAKRISE 63 Query: 96 LFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP------------ 142 L +E + V + V S + +P + + P Sbjct: 64 LMRELAPAKPPKVVLTVGSRRAAPAPQPRELGDPVSAAPRSPAVHTPPRGDVADESEIDQ 123 Query: 143 --IILGKQTISPV------------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 Q P S L+ F F TF+EG SN++A A++ ++E Sbjct: 124 LREEGEAQQRRPTGERQVQVEGSLKHNSGLNHNFTFETFVEGKSNQLARAASRQVSENPG 183 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 Y NPLF++ VGLGKTHL+ A+ NA R+ N RVVYL +E F+ A++ N Sbjct: 184 GAY-----NPLFLYGGVGLGKTHLMHAVGNALDARRENARVVYLHSERFVADMVKALQLN 238 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + K R++D LLIDD+QF GK Q EF H N+LL+ +Q++ +DR P E+ Sbjct: 239 AINDFKRFYRSVDALLIDDIQFFAGKERSQEEFFHTFNALLEGGQQMILTSDRYPKEISG 298 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 ++ R++SR G++V + + E R +IL + + + K+N+ + +A+ + ++ Sbjct: 299 VEERLKSRFGWGLTVAIEPPELETRVAIL-----MKKADQAKVNLPHDAAFFIAQKIRSN 353 Query: 368 GRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA +++ F +T + E L L+ K++ +++IQR VA++Y I Sbjct: 354 VRELEGALKKVIADSHFMGKTITQDFIRESLKDLLALQ-DKQVGVDNIQRTVAEYYKIKL 412 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 +DLLS RR R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RKV+ + + Sbjct: 413 SDLLSKRRSRSVARPRQVAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKVQALQDES 472 Query: 487 ITLKKEVELLKRLIS 501 ++++ + L RL++ Sbjct: 473 ADIREDYKNLLRLLT 487 >gi|229587579|ref|YP_002869698.1| chromosomal replication initiation protein [Pseudomonas fluorescens SBW25] gi|259645257|sp|B0B0A5|DNAA_PSEFS RecName: Full=Chromosomal replication initiator protein DnaA gi|164564809|emb|CAJ57270.1| chromosomal replication initiator protein DnaA [Pseudomonas fluorescens SBW25] Length = 501 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 161/509 (31%), Positives = 262/509 (51%), Gaps = 56/509 (11%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLSRVLEL 62 Query: 97 FQEEHSRIQGV-----------------------------EILVRSVALPSVEKTAS--- 124 E + + V V S P+ K+++ Sbjct: 63 LDEHGNGLAPVLSLLIGSKRSSAPRAAPNAPLAAAASQAQAAPVASTPAPAPSKSSAKKN 122 Query: 125 -----SPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNR 174 PS P+ S+ I +Q V G S L+ F F F+EG SN+ Sbjct: 123 AAENEEPSRDSFDPMAGASSQQAPIRAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQ 182 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL + Sbjct: 183 LARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHS 237 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +Q Sbjct: 238 ERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQ 297 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 V+ +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ Sbjct: 298 VILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLP 352 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIE 412 + +A+ + ++ REL+GA +++ F +T E+ E L L+ K + ++ Sbjct: 353 HDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVD 411 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTV Sbjct: 412 NIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTV 471 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 LHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 LHACRKINELKESDADIREDYKNLLRTLT 500 >gi|322417546|ref|YP_004196769.1| chromosomal replication initiator protein DnaA [Geobacter sp. M18] gi|320123933|gb|ADW11493.1| chromosomal replication initiator protein DnaA [Geobacter sp. M18] Length = 465 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 255/473 (53%), Gaps = 19/473 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+I+ + LK + Y +W + LKF + V L VP++F + WI ++YL I + Sbjct: 2 ENIWLEAQANLKQVLTEQTYTTWIEPLKFLGATADTVVLEVPSSFFQKWITDKYLSMIKE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN------TNISKSPIILGKQT 149 + S+ +E V + + + + K ++ Sbjct: 62 ILSAITSKSYHIEFHVAEGKAETAAEQKPDKEAKATKAKDKEKEKDQDRDKEKEKDKEKD 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P L+ ++ F +F+ G SN+ A A+Q++A + Y NPLFI+ VGLGK Sbjct: 122 KKPEQVPNLNPKYTFESFVSGPSNQFAYAASQAVANKPATNY-----NPLFIYGGVGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI N + + P ++ Y ++E FM +++R ++ R +DLLLIDD+Q Sbjct: 177 THLVNAIGNQILAKNPKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDLLLIDDIQ 236 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + Sbjct: 237 FMAGKEATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPG 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E + +ILK + + +N+ ++V + +A T++ REL+G +L S Sbjct: 297 VETKVAILKKKSDMH-----AVNLPDDVALFLAEGATSNIRELEGMLIRLEAFASLTGQE 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T +A E++ ++ +T+ + +E IQ+ VA H+ I ++L S++R++T+V PRQ+A+Y Sbjct: 352 ITLSMAREVMKDII-VEKTRDISVEMIQKTVADHFRIKLSELKSDKRIKTLVVPRQIAIY 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + + +T S+PEIG +FG +DH+T++H+V+K+EK L D LK VE +K+ + Sbjct: 411 ICRELTKASYPEIGDKFGGKDHSTIIHSVKKIEKQLTADADLKATVEDIKKKL 463 >gi|325291758|ref|YP_004277622.1| chromosomal replication initiation protein [Agrobacterium sp. H13-3] gi|325059611|gb|ADY63302.1| chromosomal replication initiation protein [Agrobacterium sp. H13-3] Length = 487 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 294/487 (60%), Positives = 365/487 (74%), Gaps = 20/487 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++F S+RLK QVGP+VYASWF RLK H+V ++V +VPT FLK+WI NRY++ Sbjct: 1 MKHDALFERFSARLKAQVGPEVYASWFARLKLHTVSKSVVRFTVPTTFLKSWINNRYMDL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASS--PSITKLSPINTNISKSPII------ 144 IT L Q E + VEILVRS + P+ + + + N S P Sbjct: 61 ITSLVQSEDPDVLKVEILVRSASRPARPAQVEERVQPVQDMGAVARNKSFIPSQPATAPS 120 Query: 145 ---------LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 L + + P+FGSPLD+RF F TF+EGSSNRVAL AA++IAE G VR Sbjct: 121 AQPAAAQATLRQGSSGPLFGSPLDTRFTFDTFVEGSSNRVALAAAKTIAEA---GAGAVR 177 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLFIHA VGLGKTHLLQAIANA+I N RVVYLTAEYFMWRFA+AIRDN AL LKD Sbjct: 178 FNPLFIHAGVGLGKTHLLQAIANAAIDSPRNPRVVYLTAEYFMWRFATAIRDNDALTLKD 237 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 +LRNIDLL+IDDMQFLQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSR Sbjct: 238 TLRNIDLLVIDDMQFLQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSR 297 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 LQGG+++ + DY+MR+ +L R+ ++++DP I++E+L HVA++VT SGREL+GAF Sbjct: 298 LQGGMAIEIEGPDYDMRYEMLNRRMGSARQDDPSFEISDEILTHVAKSVTASGRELEGAF 357 Query: 376 NQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 NQL+FR SF P L+ + DELLSHLV +GE K++RIEDIQR+VA+HYN+SR +L+SNRR Sbjct: 358 NQLMFRRSFEPNLSVDRVDELLSHLVGSGEAKRVRIEDIQRIVARHYNVSRQELVSNRRT 417 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V+PRQ+AMYL+K++TPRSFPEIGRRFG RDHTTVLHAVRK+E ++ D L EVEL Sbjct: 418 RVIVKPRQIAMYLAKMLTPRSFPEIGRRFGGRDHTTVLHAVRKIEDLISGDTKLGHEVEL 477 Query: 496 LKRLISE 502 LKRLI+E Sbjct: 478 LKRLINE 484 >gi|109896333|ref|YP_659588.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas atlantica T6c] gi|109698614|gb|ABG38534.1| chromosomal replication initiator protein DnaA [Pseudoalteromonas atlantica T6c] Length = 474 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 149/484 (30%), Positives = 258/484 (53%), Gaps = 31/484 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ + ++ W + L + V L P F+ W++++Y+ I L Sbjct: 2 SLWNRCLERLQQDLPTQQFSMWIRPLVANE-EAAAVTLFAPNRFVLDWVRDKYIAQIEAL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKT---ASSPSITKLSPINTNIS-------------- 139 F E + ++ + + SV+++ +P+I + S + +I Sbjct: 61 FAEFCANDAVPQLRIEVKSAASVQQSYSQNPAPAIHQSSAVENSIKSLQKHQAARSNVNV 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 ++ I+ S ++ + F F+EG SN++A A++ +++ Y NPL Sbjct: 121 QADNSPPNVKIAASHKSNINFNYKFDNFVEGKSNQLARAASKQVSDNPGKAY-----NPL 175 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI+ GLGKTHLL A+ N I + + VVY+ +E F+ A+++N K R+ Sbjct: 176 FIYGGTGLGKTHLLHAVGNGIIDNKKDATVVYMHSERFVQDMVKALQNNAIEEFKRYYRS 235 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E++ ++ R++SR Sbjct: 236 VDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRFGW 295 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+++ + + E R +IL + + + K+ + +EV +A+ + ++ REL+GA N++ Sbjct: 296 GLTIAIEPPELETRVAIL-----MRKALENKIVLPDEVAFFIAKRLRSNVRELEGALNRV 350 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + +F +T + E L L+ K + I++IQ+ VA++Y I D+LS RR R+ Sbjct: 351 IANANFTGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADILSKRRSRS 409 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQ+AM LSK +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ + L Sbjct: 410 VARPRQMAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIVQLREESHDIKEDYQNLI 469 Query: 498 RLIS 501 R +S Sbjct: 470 RTLS 473 >gi|163867415|ref|YP_001608612.1| chromosomal replication initiation protein [Bartonella tribocorum CIP 105476] gi|161017059|emb|CAK00617.1| chromosomal replication initiator protein DnaA [Bartonella tribocorum CIP 105476] Length = 523 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 279/474 (58%), Positives = 358/474 (75%), Gaps = 6/474 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF R+K H +V LSVPT FL++WI N Y Sbjct: 50 EEESAAAFIRVMAQLKAQVGVEAYTSWFGRVKLAEYSHTLVKLSVPTAFLRSWINNHYGS 109 Query: 92 TITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +T L+++E+S I VE++VR V+ V KT++ + + ++ + K Sbjct: 110 LLTHLWKQENSAILRVEVIVRGMERVSRDVVCKTSAPSIVLEEQATSSFVESCAEHSVKS 169 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + + VFGSPLDSR+ F +F+EG+SNRVAL AA+SIAE + +R NPLFIHASVGLG Sbjct: 170 SQAGVFGSPLDSRYTFESFVEGASNRVALAAARSIAEGHK---SALRFNPLFIHASVGLG 226 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQAIA +++KR + RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDM Sbjct: 227 KTHLLQAIAASALKRLTSARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDM 286 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK IQHEFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQGGVS+ + D Sbjct: 287 QFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVSLEIEAPD 346 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YEMR +L+ RL ++Q++D ++I+++VL ++A+TV SGR+++GAFNQL+FR SF L Sbjct: 347 YEMRLQMLRQRLKVAQQDDGMISISDDVLEYIAKTVLGSGRDIEGAFNQLLFRQSFESNL 406 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E DELL HL GE K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQVAMYL Sbjct: 407 SLERIDELLGHLTRPGEPKRIRIEEIQRTVARHYNVSKQDLLSNRRTRTVVKPRQVAMYL 466 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 467 AKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCGDQTLAKELELLKRLIGE 520 >gi|163797310|ref|ZP_02191263.1| ATPase [alpha proteobacterium BAL199] gi|159177401|gb|EDP61957.1| ATPase [alpha proteobacterium BAL199] Length = 473 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 171/469 (36%), Positives = 278/469 (59%), Gaps = 18/469 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V RL+++ G VY SW + L + V LSVP+ F++ + +Y + + L+ Sbjct: 14 WARVRGRLRSECGETVYRSWLRSLTLVRCDGSTVVLSVPSRFVRDRVMTQYGDRLRALWA 73 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-----SPIILGKQTISPV 153 E +Q VE+ V A V + S T + ++ + +P + + Sbjct: 74 IEDPAVQSVEVTVAQSAAVEVPAGRAMASATAGAGETSDQLEPLELSTPAVFRSNDPTDA 133 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 +PLD RF F+ F+ G N +A AA+ +A+ + TV NPLF++ VGLGKTHL+ Sbjct: 134 LSAPLDPRFTFANFVVGKPNELAFAAARRVADSE-----TVPFNPLFLYGGVGLGKTHLM 188 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AIA ++ P R++Y++AE FM++F A+R + KD R++D+L+IDD+QF+ G Sbjct: 189 HAIAWNLREKHPQRRMLYMSAEKFMYQFIRALRFKDTVAFKDLFRSVDVLMIDDVQFISG 248 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D +QV+ +AD+ P++L+ L+ R+RSRL G+ + YE+R Sbjct: 249 KDSTQEEFFHTFNALVDRNRQVIISADKSPNDLDGLEERLRSRLGWGLVADIHPTTYELR 308 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 IL+ S+ E +++I +VL +A +T++ REL+GA N++V + +T E Sbjct: 309 LGILQ-----SKAERLEVSIPSKVLEFLAHKITSNVRELEGALNRIVAHTTLVGRPITIE 363 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L+ + +++ IE+IQR VA H+N+ D+ S RR R++ RPRQ+AMYL+K Sbjct: 364 STQEGLHDLLKS-HDRRVTIEEIQRKVASHFNLRITDMHSARRSRSIARPRQIAMYLAKQ 422 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T RS PEIGR+FG RDHTTV+HAV+KV+++ D ++V++L+R++ Sbjct: 423 LTHRSLPEIGRKFGGRDHTTVMHAVKKVDELRAADRHFDEDVDMLRRML 471 >gi|81299909|ref|YP_400117.1| chromosomal replication initiation protein [Synechococcus elongatus PCC 7942] gi|81168790|gb|ABB57130.1| chromosomal replication initiator protein DnaA [Synechococcus elongatus PCC 7942] Length = 482 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 252/473 (53%), Gaps = 18/473 (3%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E + E ++ + RL++Q+ + +W + + ++ LS P F + W++ Y Sbjct: 20 AVEQSLEHLWEQILERLQHQLSRPTFETWIKTATAEAFDGKVLRLSTPNPFARNWLQKYY 79 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L TI + E G+E+ + ++ S E + + +SP P Sbjct: 80 LRTIADVAAEILG--HGIELQIGVLSDTSAEPESGAELWPAISPPPAVEVVKPPTTTAGR 137 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P+ S L+ ++VFS F+ G++NR+A A+ +IAE Y NPLF+ VGLGK Sbjct: 138 -PPLRSSDLNPKYVFSRFVVGANNRMAHAASLAIAEYPGREY-----NPLFLCGGVGLGK 191 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P+ ++ Y++ E F +AIR + + ++ R D++++DD+Q Sbjct: 192 THLMQAIGHYRLEIDPDAKIFYVSTEQFTNDLIAAIRRDSMQSFREHYRAADVIMVDDIQ 251 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF + NSL ++ KQ+V A+DRPPS++ L R+ SR G+ + D Sbjct: 252 FIEGKEYTQEEFFYTFNSLHEAGKQIVLASDRPPSQIPRLQERLISRFSMGLIADIQPPD 311 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 +E R +IL+ + E + + +V+ ++A T++ REL+GA + V +A I Sbjct: 312 FETRVAILQK-----KSEFENMPLPRDVIEYIAARYTSNIRELEGALTRAVA---YASIS 363 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ ++ K ++ E I + VA+ +++S DL N R R V RQV MY Sbjct: 364 GLALTLANIAPVLTPPTEKMELSPEMILQTVAETFDVSIEDLRGNSRRREVSLARQVGMY 423 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L + T S P+IG +FG +DHTTV+++ K+ ++ ++D + K+++ + + Sbjct: 424 LMRQHTDLSLPKIGEQFGGKDHTTVMYSCEKIGQLRQSDPQMGKQLQEINDQL 476 >gi|144900240|emb|CAM77104.1| chromosomal replication initiator protein DnaA [Magnetospirillum gryphiswaldense MSR-1] Length = 458 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 171/465 (36%), Positives = 271/465 (58%), Gaps = 15/465 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + RL+++VG Y SW + + H ++ L +PT F++ W+ Y E I L+ Sbjct: 6 WDRIKVRLRDEVGDAAYRSWLRPITLHQAADGMIRLGLPTRFMRDWVATHYGERIRALWG 65 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E+ + +EI+V +E ++ ++ + T + P G+ L Sbjct: 66 AENPALHAIEIVV--ANRTGLEPAPAAAAVKAATGNVTPLRPRPAAPCAPADVDELGAQL 123 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F F+ G N A AA +AE T V NPLF++ VGLGKTHL+ AIA+ Sbjct: 124 DPRFTFKNFVVGKPNEFAHAAAVRVAEA-----TAVSFNPLFLYGGVGLGKTHLMHAIAH 178 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + P RV+YL+AE FM+RF A+R ++ K+ R++D+L++DD+QF+ GK Q Sbjct: 179 HIREHNPARRVLYLSAEKFMYRFIRALRSQDTMSFKEQFRSVDVLMVDDVQFIAGKDATQ 238 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D +Q+V +AD+ PS+LE ++ R+RSRL G+ L YE+R IL+ Sbjct: 239 EEFFHTFNALVDQGRQIVISADKSPSDLEGMEDRLRSRLNSGLVADLHATTYELRLGILQ 298 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 S+ E + ++V+ +A +T++ REL+GA N+++ +T E ++ Sbjct: 299 -----SKAEQMGAVVPQKVMEFLAHKITSNVRELEGALNRVIAHSQLVGRSITLESTQDV 353 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ +++ IE+IQ+ VA+H+NI ++ S RR R V RPRQVAMYL+K +T RS Sbjct: 354 LHDLLKAS-DRRITIEEIQKRVAEHFNIKLAEMSSARRSRQVARPRQVAMYLAKQLTSRS 412 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 PEIGR+FG RDHTTV+HAV+K+E++ +D ++VELL+R++ Sbjct: 413 LPEIGRKFGGRDHTTVMHAVKKIEELRSSDQGFSEDVELLRRMLQ 457 >gi|148262086|ref|YP_001228792.1| chromosomal replication initiation protein [Geobacter uraniireducens Rf4] gi|189044596|sp|A5GDX1|DNAA_GEOUR RecName: Full=Chromosomal replication initiator protein DnaA gi|146395586|gb|ABQ24219.1| chromosomal replication initiator protein DnaA [Geobacter uraniireducens Rf4] Length = 449 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 143/467 (30%), Positives = 256/467 (54%), Gaps = 23/467 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ S +K + P Y +W + ++FH++ + + L VP+ F+K W+ +YL I + Sbjct: 2 EKVWLEAQSNIKKVLTPQTYNTWIKPIRFHTLTDDNLTLEVPSKFIKEWVTEKYLPMIVE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 S +E + T P +K T + K + + Sbjct: 62 AISSLTSVKYQIEFKI----------TEKIPLESKPVDNFTPVIKDNEPSKETNKNIDIT 111 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F +F+ G+SN+ A A+Q++A + Y NPLFI+ VGLGKTHLL A Sbjct: 112 ANLNPKYTFDSFVCGASNQFAHAASQAVASNPASNY-----NPLFIYGGVGLGKTHLLIA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N + ++ Y ++E FM + +R ++ R +D+LLIDD+QF+ GK Sbjct: 167 IGNHIKENNKKAKICYYSSEKFMNEMINCLRYKKMDEFRNKFRKMDILLIDDIQFMAGKE 226 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + D E + + Sbjct: 227 ATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPDIETKIA 286 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 ILK + + + + +V + +A + T++ REL+G +L S +T +A Sbjct: 287 ILKK-----KSDLNSITLPNDVALFLASSATSNVRELEGMLIRLGAYASLTGSEITLNMA 341 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++L ++ +TK + +E IQ+ VA+H+ I ++L S++R++T V PRQ+A+++ + +T Sbjct: 342 RDILKDII-VEKTKDITVEMIQKHVAEHFKIKVSELKSDKRLKTFVVPRQIAIFICRELT 400 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+PEIG +FG +DH+T++H+V+K+EK + D+ +K VE LK+ + Sbjct: 401 KSSYPEIGEKFGGKDHSTIIHSVKKIEKQMANDLEIKNIVENLKKEL 447 >gi|256821229|ref|YP_003145192.1| chromosomal replication initiator protein DnaA [Kangiella koreensis DSM 16069] gi|256794768|gb|ACV25424.1| chromosomal replication initiator protein DnaA [Kangiella koreensis DSM 16069] Length = 461 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 155/470 (32%), Positives = 262/470 (55%), Gaps = 18/470 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK- 95 +++ +L++++ + +W + L+ + + L P F WI+ +YL+ I + Sbjct: 4 NVWRSCLQKLQSELSATEFNTWIKPLQVKE-TDSEMALYAPNPFFVDWIRQQYLDRINEF 62 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--TISPV 153 L Q ++++ + + + V +VA V + ++S ++ T + P+ S Sbjct: 63 LIQRDNNQQKHISLHVGNVAQ-IVNQNSNSQAVNNNHNAATPSNSKPVAQNNHINQSSGF 121 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ +F+FS+F+EG SN++A AAQ + E Y NPLFI+ VGLGKTHL+ Sbjct: 122 QQNNLNPKFLFSSFVEGKSNQLARAAAQQVVENPGEAY-----NPLFIYGGVGLGKTHLM 176 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 ++ N+ + + PN +VYL +E FM A++ K+ R++D LLIDD+QF Sbjct: 177 HSVGNSILDKNPNAHIVYLHSERFMANMVKALQTGTMDKFKNFYRSVDALLIDDIQFFAN 236 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L++ KQV+ DR P E+E L+ R++SR G++V + + E R Sbjct: 237 KGRTQEEFFHTFNNLIEKNKQVIITCDRFPKEVEGLEERLKSRFGWGLTVAVEPPELETR 296 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL +S+ + K+ + EV +A+ + ++ REL+GA +++ F +T + Sbjct: 297 VAIL-----MSKAQSSKIELPNEVAFFIAKRIRSNVRELEGALKRVIANAQFTGRAITLD 351 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + L L+ K + IE+IQ+ VA +Y I +DLLS RR R++ RPRQ+AM L+K Sbjct: 352 FVKDALKDLIAAQ-DKLISIENIQKTVASYYKIKVSDLLSQRRSRSIARPRQMAMALAKN 410 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG +DHTTVLHA RK+E++ I ++++ L R +S Sbjct: 411 LTNHSLPEIGDAFGGKDHTTVLHACRKIEQLKGESIDIEEDFSNLLRTLS 460 >gi|253987484|ref|YP_003038840.1| chromosomal replication initiation protein [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253778934|emb|CAQ82094.1| chromosomal replication initiator protein dnaA [Photorhabdus asymbiotica] Length = 439 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 149/452 (32%), Positives = 246/452 (54%), Gaps = 21/452 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 W + L+ + N + L P F+ W++ +Y+ I L + V +L V Sbjct: 1 MWIRPLQA-ELSGNTLALYAPNRFVLDWVREKYINNINGLLNDFCG--AEVPLLRFEVGN 57 Query: 117 PSVEKTASSP----SITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFVFSTFIEGS 171 + + S P + ++P N S P + + S ++ + F F+EG Sbjct: 58 KPISQNDSPPQRVVAHAPVTPAPQNTSVRPSWDNTAVQPELSYRSNVNPKHTFDNFVEGK 117 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N+ + R+ N +VVY Sbjct: 118 SNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNSIMARKANAKVVY 172 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + +E F+ A+++N + K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 173 MHSERFVQDMVKALQNNAIEDFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEG 232 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ ++ Sbjct: 233 NQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENEI 287 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKM 409 + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ K + Sbjct: 288 QLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EKLV 346 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDH Sbjct: 347 TIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDH 406 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TTVLHA RK+E++ E +K++ L R +S Sbjct: 407 TTVLHACRKIEQLREESHDIKEDFSNLIRTLS 438 >gi|332798024|ref|YP_004459523.1| chromosomal replication initiator protein dnaA [Tepidanaerobacter sp. Re1] gi|332695759|gb|AEE90216.1| Chromosomal replication initiator protein dnaA [Tepidanaerobacter sp. Re1] Length = 453 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 253/473 (53%), Gaps = 26/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPD-VYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + ++ ++ V L N++ D + + + + ++ + + VP +F+K+ I+ RY Sbjct: 1 MSIDPLYLWQHVLKILSNELNNDMSFNTVLKPTRLAALEADTAIVEVPNDFIKSVIEKRY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L I +F + V I V S S S+ ++S T Sbjct: 61 LNLIKDIFSSVLKQNINVVINVNPEGFGSEVLPDDSISLNEVSETKT------------- 107 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 ++ L+ ++ F TF+ G+SNR A A+Q++A+ + Y NP FI+ VGLGK Sbjct: 108 LAEDTTPSLNQKYTFDTFVVGNSNRFAHAASQAVAQAPAKAY-----NPFFIYGGVGLGK 162 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + +++ P +VVYL++E F ++IRD+ + ++ R ID+LLIDD+Q Sbjct: 163 THLMHAIGHYILQQDPTCKVVYLSSEKFTNELINSIRDDKNVEFRNKYRTIDVLLIDDIQ 222 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L D+ KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 223 FIAGKERTQEEFFHTFNALHDANKQLVISSDRPPKEIPTLEERLRSRFEWGLITDIQPPD 282 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 +E R +IL+ + L + +V+ +A + T+ REL+GA ++V S Sbjct: 283 FETRIAILQK-----KAMMENLIVPNDVINFIATKIETNIRELEGALIRVVAYSSLTDCP 337 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+++L ++ G+ K++ + I V +++IS + S +R + + RQVAMY Sbjct: 338 IDIGLAEQVLKDILPDGKPKQVTSKQIVEEVGSYFSISPEEFKSKKRTKDLAFARQVAMY 397 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L +T S P+IG FG RDHTTV+HA K+ + ++ D L VE LK+ I Sbjct: 398 LCCELTDLSLPKIGEEFGGRDHTTVIHARDKITRDIQEDSQLSNAVESLKKKI 450 >gi|261854631|ref|YP_003261914.1| chromosomal replication initiator protein DnaA [Halothiobacillus neapolitanus c2] gi|261835100|gb|ACX94867.1| chromosomal replication initiator protein DnaA [Halothiobacillus neapolitanus c2] Length = 469 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 158/479 (32%), Positives = 252/479 (52%), Gaps = 19/479 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ RL + W + L+ N + L P F+ + +Y Sbjct: 1 MSTITSELWQQCIDRLSEDLPVQQINMWIRPLQAELKAENHLILWAPNRFVMDMVAQQYK 60 Query: 91 ETITKLFQEEHSRI---QGVEILVRSVALP---SVEKTASSPSITKLSPINTNISKSPII 144 I + Q R G+++ P T SS S S + + + Sbjct: 61 SKILEQAQILLERPDLQLGLQVGSVPSEQPVDMPAAATLSSKSGAVSSGVAPRVEPMADL 120 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 T + F S ++ +F F F+EG SN++A A+Q +A+ GY NPLFI+ Sbjct: 121 AEPDTGAKEFVSHINKKFNFDNFVEGKSNQLARAASQQVAQNPGVGY-----NPLFIYGG 175 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QA+ NA ++R P+ +VVYL +E ++ + S+I++N KD R+++ LL Sbjct: 176 VGLGKTHLMQAVGNAILERSPDAKVVYLHSERYVQQMVSSIKNNTIEEFKDFYRSVNALL 235 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF GK Q EF H N+L++ +Q++ DR P E+E L+ R++SR G++V Sbjct: 236 IDDIQFFAGKPRSQEEFFHTFNALIEQGQQIIMTCDRYPKEIEGLEERLKSRFGWGLTVA 295 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R +IL+ S+ E +++++ +V +A+ V + REL+GA +++ Sbjct: 296 VEPPDLETRVAILQ-----SKAEQSQISLSTDVAFFIAKRVRANIRELEGALRRVIATAQ 350 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F +T E E L + K + +E+IQR VAK YN+ DL RR R++ RPR Sbjct: 351 FTGRPITVESTKEALKDQIAAQ-AKLITLENIQRTVAKFYNLKLTDLTGARRNRSIARPR 409 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM L+K +T S PEIG FG RDHTTV+HA +K+E++ E + L + LL+ ++ Sbjct: 410 QVAMSLAKELTNHSLPEIGEAFGGRDHTTVIHACKKIEELREIESKLSDDYNLLRHTLN 468 >gi|315286682|ref|ZP_07872175.1| chromosomal replication initiator protein DnaA [Listeria ivanovii FSL F6-596] gi|313630903|gb|EFR98594.1| chromosomal replication initiator protein DnaA [Listeria ivanovii FSL F6-596] Length = 420 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 151/446 (33%), Positives = 245/446 (54%), Gaps = 29/446 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E I+ +K + Y +W + HS+ N +S P NF++ W++ Y + Sbjct: 2 QSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQF 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + QE R+ V + + E T PS ++ + I +GK Sbjct: 62 IANILQEITGRLFDVRF-IDGEQEENFEYTVIKPS--------PSLDEDGIEIGKHM--- 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 110 -----LNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 159 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + + + N +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL Sbjct: 160 MHAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLA 219 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 220 GKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 279 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + + L+I EV++++A + ++ REL+GA ++V S +TA Sbjct: 280 RIAILRK-----KAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA 334 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L ++ + +++ + I IQ V +++++ D + +R +++ PRQ+AMYLS+ Sbjct: 335 GLAAEALKDIIPSSKSQVITISGIQETVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSR 394 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAV 476 +T S P+IG FG RDHTTV+HA Sbjct: 395 ELTDASLPKIGDEFGGRDHTTVIHAH 420 >gi|152972609|ref|YP_001337755.1| chromosomal replication initiation protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|262040466|ref|ZP_06013709.1| DNA replication initiator protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|150957458|gb|ABR79488.1| chromosomal replication initiation protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|259042219|gb|EEW43247.1| DNA replication initiator protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 444 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 146/455 (32%), Positives = 243/455 (53%), Gaps = 22/455 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L + E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGADAPQLRFEVGAKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFI 168 + + + + + + T + I+ P + S ++ + F F+ Sbjct: 60 ASSLQKGAVSPAAAAIPAAQVQTARAAPTIVRPGWDNVPAPAEPTYRSNVNVKHTFDNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN + Sbjct: 120 EGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIVARKPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+L Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 234 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ Sbjct: 235 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADE 289 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-E 348 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 349 KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGG 408 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 RDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 443 >gi|56750458|ref|YP_171159.1| chromosomal replication initiation protein [Synechococcus elongatus PCC 6301] gi|56685417|dbj|BAD78639.1| chromosomal replication initiator protein DnaA [Synechococcus elongatus PCC 6301] Length = 482 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 251/473 (53%), Gaps = 18/473 (3%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E + E ++ + RL++Q+ + +W + + ++ LS P F + W++ Y Sbjct: 20 AVEQSLEHLWEQILERLQHQLSRPTFETWIKTATAEAFDGKVLRLSTPNPFARNWLQKYY 79 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L TI + E G+E+ + ++ S E + + +SP P Sbjct: 80 LRTIADVAAEILG--HGIELQIGVLSDTSAEPESGAELWPAISPPPAVEVVKPPTTTAGR 137 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P+ S L+ ++VFS F+ G+ NR+A A+ +IAE Y NPLF+ VGLGK Sbjct: 138 -PPLRSSDLNPKYVFSRFVVGAYNRMAHAASLAIAEYPGREY-----NPLFLCGGVGLGK 191 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P+ ++ Y++ E F +AIR + + ++ R D++++DD+Q Sbjct: 192 THLMQAIGHYRLEIDPDAKIFYVSTEQFTNDLIAAIRRDSMQSFREHYRAADVIMVDDIQ 251 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF + NSL ++ KQ+V A+DRPPS++ L R+ SR G+ + D Sbjct: 252 FIEGKEYTQEEFFYTFNSLHEAGKQIVLASDRPPSQIPRLQERLISRFSMGLIADIQPPD 311 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 +E R +IL+ + E + + +V+ ++A T++ REL+GA + V +A I Sbjct: 312 FETRVAILQK-----KSEFENMPLPRDVIEYIAARYTSNIRELEGALTRAVA---YASIS 363 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ ++ K ++ E I + VA+ +++S DL N R R V RQV MY Sbjct: 364 GLALTLANIAPVLTPPTEKMELSPEMILQTVAETFDVSIEDLRGNSRRREVSLARQVGMY 423 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L + T S P+IG +FG +DHTTV+++ K+ ++ ++D + K+++ + + Sbjct: 424 LMRQHTDLSLPKIGEQFGGKDHTTVMYSCEKIGQLRQSDPQMGKQLQEINDQL 476 >gi|296100372|ref|YP_003610518.1| chromosomal replication initiator protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054831|gb|ADF59569.1| chromosomal replication initiator protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 442 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 147/453 (32%), Positives = 242/453 (53%), Gaps = 20/453 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L + E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDAPQLRFEVGTKP 59 Query: 114 VA---LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 V +V + + +P ++ P + S ++ + F F+EG Sbjct: 60 VTQTVRETVNVAVPAQAAPAPAPRVAPAARPGWDNVPAPAEPTYRSNVNVKHTFDNFVEG 119 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VV Sbjct: 120 KSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVV 174 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 Y+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 175 YMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLE 234 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ Sbjct: 235 GNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADEND 289 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ K Sbjct: 290 IRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EKL 348 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RD Sbjct: 349 VTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRD 408 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 HTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 441 >gi|316931397|ref|YP_004106379.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris DX-1] gi|315599111|gb|ADU41646.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris DX-1] Length = 469 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 219/474 (46%), Positives = 306/474 (64%), Gaps = 14/474 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++ V RL++ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y + + Sbjct: 3 QDRWSRVKGRLRSSVGEDVYSSWFARMDLESVQDESVHLSVPTRFLKSWIQTHYSDKVLS 62 Query: 96 LFQEEHSRIQGVEILVRSVAL---PSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +Q E + +++ VRS A P+ E A S S + + Sbjct: 63 CWQAELPDVNRIDVTVRSPARCSAPAKEAPAQVESRRDEQKSAAERSNGATPVSANHDA- 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + GSPLD R F++F+ G SN +A AA+ +AE V NPL+IH+ VGLGKTHL Sbjct: 122 LGGSPLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGLGKTHL 179 Query: 213 LQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 LQA+ NA +R +V+YLTAE FM+ F +A++ +L K++LR ID+L+IDD+Q Sbjct: 180 LQAVTWAGNAGSER----KVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQ 235 Query: 270 FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 FLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V + Sbjct: 236 FLQGKTTQAEFCHTLNALIDAGRQVVVAADRPPSDLESLDERVRSRLAGGLVVEMAPLGE 295 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 ++R IL++R+ ++ ++ + VL ++ART+T +GR+L+GA N+L+ + Sbjct: 296 DLRLGILRSRVVAARAHHVSFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLNNQPV 355 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL Sbjct: 356 TLEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDLLSSRRTANVVRPRQVAMYL 415 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVE LKR + E Sbjct: 416 AKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDNTLSDEVESLKRQLQE 469 >gi|268315579|ref|YP_003289298.1| chromosomal replication initiator protein DnaA [Rhodothermus marinus DSM 4252] gi|262333113|gb|ACY46910.1| chromosomal replication initiator protein DnaA [Rhodothermus marinus DSM 4252] Length = 503 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 149/509 (29%), Positives = 250/509 (49%), Gaps = 48/509 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL----SVPTNFLKAWIK 86 +E E+I+ +++ V + +WF+ +K S+ + +P+ F W++ Sbjct: 1 MERTPEAIWHACLEIIRDNVNRQSFKTWFEPIKPVSLTEEDDQIKLTVELPSRFYYEWLE 60 Query: 87 NRYLETITKLFQEEHSRIQG--VEILVR-----------SVALPS--------------V 119 Y + K + +I++ SV +P+ Sbjct: 61 EHYYSLLRKTITKVLGPKGRLFYKIVIEKEDPQSGFEGISVNMPAHPPETTPPPPPPRTR 120 Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVF-----GSPLDSRFVFSTFIEGSSNR 174 + ++P IT SP+ + P+ I + S LD ++ F FIEG NR Sbjct: 121 PVSPTAPPITPESPVEVAEQEPPVPTNPFAIPGIIRKIQVDSQLDPKYTFERFIEGDCNR 180 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A +AA +IA+ NP ++ VGLGKTHL+QAI N + + + Y+++ Sbjct: 181 LARSAALAIAQQPG----ATSFNPFLVYGGVGLGKTHLIQAIGNYARQHHTAETIRYVSS 236 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F F AI+ N R+IDLL++DD+QF GK Q EF H+ N+L + KQ Sbjct: 237 EQFTNEFVQAIQHNRINEFSLFYRHIDLLIVDDIQFFGGKEKTQEEFFHIFNALHQTGKQ 296 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V +ADRPP ++ ++ R+ SR Q G+ + D E R +IL+ + ED + + Sbjct: 297 IVLSADRPPKDIPGIEERLLSRFQWGLMADVQPPDLETRIAILRR-----KAEDEGIELG 351 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIE 412 ++V+ +A V ++ REL+GA +LV ++ + +A E L L+ + I+ Sbjct: 352 DDVIEFIAHHVKSNFRELEGALLRLVAHAAYQRRDIDLALAREALRDLIKESRVT-LTID 410 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 IQ++V ++++I + + S R R +V+ RQVAMY K T S IG FG RDH+TV Sbjct: 411 QIQQLVCEYFDIEPDLIRSKTRKREIVQARQVAMYFCKQFTQHSLKSIGLHFGGRDHSTV 470 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 +HA + VE ++ETD ++ +E L+ IS Sbjct: 471 IHACQSVENLMETDPKFREIIEELRHKIS 499 >gi|332304387|ref|YP_004432238.1| chromosomal replication initiator protein DnaA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171716|gb|AEE20970.1| chromosomal replication initiator protein DnaA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 476 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 149/486 (30%), Positives = 253/486 (52%), Gaps = 33/486 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ + ++ W + L + + L P F+ W++++Y+ I L Sbjct: 2 SLWNRCLERLQQDLPTQQFSMWIRPLVANE-ESGAITLFAPNRFVLDWVRDKYIAQIEAL 60 Query: 97 FQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS------------- 141 F E + + + I V+S + +S + S + N KS Sbjct: 61 FVEFCTNDAVPQLRIEVKSATNNVQQSNPASVATASTSSVVENSIKSLQKHQTARSSASS 120 Query: 142 ----PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 ++ S ++ + F F+EG SN++A A++ +++ Y N Sbjct: 121 QTETNSATPNAKLAASHKSNINFNYKFDNFVEGKSNQLARAASKQVSDNPGKAY-----N 175 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFI+ GLGKTHLL A+ N I + + VVY+ +E F+ A+++N K Sbjct: 176 PLFIYGGTGLGKTHLLHAVGNGIIDNKNDATVVYMHSERFVQDMVKALQNNAIEEFKRYY 235 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E++ ++ R++SR Sbjct: 236 RSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLKSRF 295 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G+++ + + E R +IL + + + K+ + +EV +A+ + ++ REL+GA N Sbjct: 296 GWGLTIAIEPPELETRVAIL-----MRKALENKIILPDEVAFFIAKRLRSNVRELEGALN 350 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 +++ +F +T + E L L+ K + I++IQ+ VA++Y I D+LS RR Sbjct: 351 RVIANANFTGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKMADILSKRRS 409 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R+V RPRQ+AM LSK +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ + Sbjct: 410 RSVARPRQMAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIVQLREESHDIKEDYQN 469 Query: 496 LKRLIS 501 L R +S Sbjct: 470 LIRTLS 475 >gi|295095340|emb|CBK84430.1| chromosomal replication initiator protein DnaA [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 441 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 146/452 (32%), Positives = 239/452 (52%), Gaps = 19/452 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L + E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNDFCGSDAPQLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNIS--KSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 V E + ++ + P + S ++ + F F+EG Sbjct: 60 VTQTVREVVNVAAPAQAAPAPAPRVAPARQGWDNVPAPAEPTYRSNVNVKHTFDNFVEGK 119 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY Sbjct: 120 SNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVY 174 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + +E F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 175 MHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEG 234 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + Sbjct: 235 NQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDI 289 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKM 409 + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ K + Sbjct: 290 RLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EKLV 348 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDH Sbjct: 349 TIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDH 408 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TTVLHA RK+E++ E +K++ L R +S Sbjct: 409 TTVLHACRKIEQLREESHDIKEDFSNLIRTLS 440 >gi|39933081|ref|NP_945357.1| chromosomal replication initiation protein [Rhodopseudomonas palustris CGA009] gi|61212615|sp|Q6NDV3|DNAA_RHOPA RecName: Full=Chromosomal replication initiator protein DnaA gi|39652706|emb|CAE25445.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris CGA009] Length = 472 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 219/479 (45%), Positives = 308/479 (64%), Gaps = 14/479 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++ V RL++ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y Sbjct: 1 MSNMEQDRWSRVKGRLRSSVGEDVYSSWFARMDLESVHDESVHLSVPTRFLKSWIQTHYS 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + + +Q E + V++ VRS A P+ E A S + S + Sbjct: 61 DKVLSCWQAELPEVNRVDLTVRSPVRCATPAKEVPAPVESRRDEQRPSAERSNGATPVSA 120 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + GSPLD R F++F+ G SN +A AA+ +AE V NPL+IH+ VGL Sbjct: 121 NHDA-LGGSPLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGL 177 Query: 208 GKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GKTHLLQA+ NA +R +V+YLTAE FM+ F +A++ +L K++LR ID+L+ Sbjct: 178 GKTHLLQAVTWAGNAGTER----KVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLV 233 Query: 265 IDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPP++LESLD R+RSRL GG+ V + Sbjct: 234 IDDLQFLQGKTTQAEFCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEM 293 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 ++R IL++R+ ++ ++ + VL ++ART+T +GR+L+GA N+L+ Sbjct: 294 APLGEDLRLGILRSRVVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKL 353 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T E+A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQ Sbjct: 354 NNQPVTLEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDLLSSRRTANVVRPRQ 413 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 VAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVE LKR + E Sbjct: 414 VAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDTTLSDEVESLKRQLQE 472 >gi|320157816|ref|YP_004190195.1| chromosomal replication initiator protein DnaA [Vibrio vulnificus MO6-24/O] gi|319933128|gb|ADV87992.1| chromosomal replication initiator protein DnaA [Vibrio vulnificus MO6-24/O] Length = 445 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 153/456 (33%), Positives = 248/456 (54%), Gaps = 23/456 (5%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL +I +L QE E+ R Sbjct: 1 MWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSINRLLQEYCGHDIPNLRFEVGSRP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPII------LGKQTISPVFGSPLDSRFVFSTF 167 VA P T + + S + + + S ++ + F+ F Sbjct: 60 VAAPKPAPTRTPADVAAESSAPAQLQARKPVHKTWDDDAQAIADINHRSNVNPKHKFNNF 119 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 +EG SN++ L AA+ +A+ Y NPLF++ GLGKTHLL A+ NA + +PN Sbjct: 120 VEGKSNQLGLAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNA 174 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 +VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+ Sbjct: 175 KVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNA 234 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + E Sbjct: 235 LLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAE 289 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGE 405 D ++++ +EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 DHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQ- 348 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 349 EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFG 408 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 GRDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 444 >gi|99079842|ref|YP_611996.1| chromosomal replication initiation protein [Ruegeria sp. TM1040] gi|123252667|sp|Q1GKT2|DNAA_SILST RecName: Full=Chromosomal replication initiator protein DnaA gi|99036122|gb|ABF62734.1| chromosomal replication initiator protein DnaA [Ruegeria sp. TM1040] Length = 470 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 166/473 (35%), Positives = 275/473 (58%), Gaps = 13/473 (2%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + ++ RL VG + + +W + L+ V + VPTNF+ ++ + + I Sbjct: 2 TDDTWGLLRKRLLKTVGQNNFTTWIEPLELDQVDGGVATFHVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNI-----SKSPIILGKQT 149 F + +Q + V + + + S +I + +P+ T + ++ K Sbjct: 62 HEFNKSGEAVQRLAFKVAANSPTRPVQPTMSEAIEEPAPLQTTVVDQLGNQEGNTSVKSP 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + +PLD RF F +F+ G N +A AA+ +AE V NPL ++ VGLGK Sbjct: 122 PEDLQAAPLDPRFTFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLVLYGGVGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AIA +R P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+Q Sbjct: 177 THLMHAIAWELKERNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQ 236 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L D Sbjct: 237 FIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTD 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 YE+R IL+ ++ ++K P L I + VL +A ++T+ R L+GA +L S Sbjct: 297 YELRLGILQTKVQQNRKNYPDLKIADGVLELLAHRISTNVRVLEGALTRLFAFASLVGRE 356 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ + L+ ++ +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMY Sbjct: 357 IDMDLTQDCLADVLRAS-ERKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVAMY 415 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L K +T RS PEIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R + Sbjct: 416 LCKQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRRSL 468 >gi|158319060|ref|YP_001511567.1| chromosomal replication initiation protein [Alkaliphilus oremlandii OhILAs] gi|167016896|sp|A8MEA0|DNAA_ALKOO RecName: Full=Chromosomal replication initiator protein DnaA gi|158139259|gb|ABW17571.1| chromosomal replication initiator protein DnaA [Alkaliphilus oremlandii OhILAs] Length = 451 Score = 484 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 261/473 (55%), Gaps = 26/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ N I+ + +K ++ + +W + ++ S+ N + L VP F K + RY Sbjct: 1 MQDNLPQIWEKTLNLIKPELTEVSFTTWIKSIEVISLEGNTMILGVPNVFTKDILTARYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I+ ++ S+ + +V PS EK + + K + NIS + Sbjct: 61 TLISNALKQTTSKNFEIRFIV-----PSEEKISKTEESQKKLEGSVNISVASDQF----- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ ++ F TF+ G+SNR A A+ ++AE + Y NPLF++ VGLGKT Sbjct: 111 ---VSNNLNPKYTFDTFVIGNSNRFAHAASLAVAESPAKAY-----NPLFLYGGVGLGKT 162 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +VVY+++E F ++IR + + ++ R ID+LL+DD+QF Sbjct: 163 HLMHAIGHFILQNNPKAKVVYVSSETFTNELINSIRHDRNVEFRNRFRTIDVLLVDDIQF 222 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L +S KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 223 IAGKESTQEEFFHTFNALHESNKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDL 282 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + +++ EVL H+A+ + ++ REL+GA ++V S + Sbjct: 283 ETRIAILYK-----KAQMENIDVPNEVLTHIAKKIQSNIRELEGALIRIVAYSSLTNSEI 337 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L L ++ +++ I+ I+ +VA YN+ D S +R R++ PRQ+AMYL Sbjct: 338 TVELASEALKELFSSK-ARQLNIDLIKEVVANKYNMKIEDFNSKKRTRSISYPRQIAMYL 396 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG FG RDHTTV+HA K+ K + D +K+++E + + I Sbjct: 397 SRELTDLSLPKIGEEFGGRDHTTVMHAHEKISKDILADDNIKEKIERIAKEIK 449 >gi|152994044|ref|YP_001338879.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MWYL1] gi|189044598|sp|A6VR65|DNAA_MARMS RecName: Full=Chromosomal replication initiator protein DnaA gi|150834968|gb|ABR68944.1| chromosomal replication initiator protein DnaA [Marinomonas sp. MWYL1] Length = 516 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 153/527 (29%), Positives = 260/527 (49%), Gaps = 70/527 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ E + + RL+++ + +W + L+ + + + LS P F+ W+ N+Y Sbjct: 1 MSLEH-WNLCLQRLQSEFSTSQFNTWIRPLQAEMLPNGELCLSAPNRFVLDWVSNKYQTR 59 Query: 93 ITKLFQEEHSRIQ----------------------------------------------- 105 I +L E Sbjct: 60 IKELLSEFAGDDLAPALKLAVKAQNFAQANQMSPPPPPVSSEPAINPLNNEVARESGYRP 119 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISK---------SPIILGKQTISPVFGS 156 G ++ P+ + +P + + + +P + G+ Sbjct: 120 GFGLMDDEEGSPNADLEFEAPLTLSGTGLRGELEPYEQGQLPLTAPKRKVQVEGGINHGA 179 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L++ F F FIEG SN++A AA +AE Y NPLFI+ VGLGKTHL+QA+ Sbjct: 180 NLNNSFTFDNFIEGKSNQLAHAAALQVAENPGGAY-----NPLFIYGGVGLGKTHLMQAV 234 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 ++ PN +VVYL +E F+ A++ N + K R++D LLIDD+QF GK Sbjct: 235 GTEMMRHNPNAKVVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGKDR 294 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL+ +Q++ DR P E++ L+ R++SR G++V + + E R +I Sbjct: 295 TQEEFFHTFNALLEGGQQMILTCDRYPKEIQGLEDRLKSRFGWGLTVAIEPPELETRVAI 354 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + ++ + ++ + +A+ + ++ REL+GA +++ F +T + Sbjct: 355 L-----MRKADESGIKLSYDSAFFIAQKIRSNVRELEGALKRVIANSHFTGRAITPDFVR 409 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ K + I++IQR+VA++Y I +DLLS RR R+V RPRQVAM L+K +T Sbjct: 410 ESLKDLLALQ-DKLVNIDNIQRIVAEYYKIKISDLLSKRRSRSVARPRQVAMSLAKELTN 468 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTT LHA+RK++++ +TD ++++ + L R+++ Sbjct: 469 HSLPEIGDAFGGRDHTTALHAIRKIKELQDTDSDIREDYKQLMRILT 515 >gi|260574423|ref|ZP_05842427.1| chromosomal replication initiator protein DnaA [Rhodobacter sp. SW2] gi|259023319|gb|EEW26611.1| chromosomal replication initiator protein DnaA [Rhodobacter sp. SW2] Length = 452 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 175/457 (38%), Positives = 266/457 (58%), Gaps = 21/457 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + V L+ Q+G + Y SW + L + + +V VP+ F W+ Y + I Sbjct: 2 TDETWGKVCEELRQQIGDNNYKSWIEPLTLSGLENGVVSFRVPSQFHGDWVSRNYSDHIR 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + VE S + KTA+ + ++ P Sbjct: 62 AHLGTAGVTVHRVEFK-HSARAVAAPKTAAPRGVKAAKARPAAEAEVP------------ 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+PLDSRF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 109 GAPLDSRFTFDSFVVGKPNELAHAAARRVAEG-----GPVSFNPLFLYGGVGLGKTHLMH 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA+ RQP+LRV+YL+AE FM+RF A+R+ ++ K+ R++D+L++DD+QF+ GK Sbjct: 164 AIAHELHVRQPHLRVLYLSAEQFMYRFVQALRERQIMDFKELFRSVDVLMVDDVQFIAGK 223 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L DYE+R Sbjct: 224 DSTQEEFFHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRL 283 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL+ + + + P L + + V+ +A +TT+ R L+GA +L S +T ++ Sbjct: 284 GILQQKAEFYRGQYPGLQLADGVVEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDL 343 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L+ ++ +K+ IE+IQR VA+H+NI D++ +RVRT+ RPRQVAMYL+K + Sbjct: 344 TQDCLADILRAS-DRKVTIEEIQRKVAEHFNIRLADMIGPKRVRTIARPRQVAMYLAKQL 402 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 TPRS PEIGRRFG RDHTT++H VR++E+++ TD L Sbjct: 403 TPRSLPEIGRRFGGRDHTTIMHGVRRIEELITTDSQL 439 >gi|254463654|ref|ZP_05077065.1| chromosomal replication initiator protein DnaA [Rhodobacterales bacterium Y4I] gi|206684562|gb|EDZ45044.1| chromosomal replication initiator protein DnaA [Rhodobacterales bacterium Y4I] Length = 470 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 164/477 (34%), Positives = 275/477 (57%), Gaps = 12/477 (2%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 +R + E + + +RL VG + + +W + L+F +V + VPTNF+ ++ Sbjct: 1 MRRSM---TEEKWGQLRNRLLKTVGQNNFTTWIEPLEFDTVDGGVAVFKVPTNFMGNYVS 57 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALP-SVEKTASSPSITKLSPINTNISKSPIIL 145 + + I +Q + V + + E ++ S ++ Sbjct: 58 QNFADLILHELTMSGEPVQRLAFRVAANSPARPAEPAVAAGSYGGAQDDLAVMTAPAAAA 117 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 G+ T+ + +PLD RF F +F+ G N +A AA+ + E V NPL ++ V Sbjct: 118 GRDTLEALQAAPLDPRFTFDSFVVGKPNELAHAAARRVGEG-----GPVTFNPLVLYGGV 172 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ AIA ++ P+L V+YL+AE FM+RF A+R+ ++ K R++D+L++ Sbjct: 173 GLGKTHLMHAIAWELKEKNPHLNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMV 232 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L Sbjct: 233 DDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDL 292 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 DYE+R IL+ ++ ++ P L I + VL +A ++T+ R L+GA +L S Sbjct: 293 HPTDYELRLGILQTKVQQQRETYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASL 352 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + ++ + L+ ++ +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQ Sbjct: 353 VGREIDMDLTQDCLADVLRAS-ERKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQ 411 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 VAMYL K +T RS PEIGRRFG RDHTTV+H V+++E++ TD + ++VE+L+R + Sbjct: 412 VAMYLCKQLTSRSLPEIGRRFGGRDHTTVMHGVKRIEELKLTDGQIAEDVEMLRRSL 468 >gi|329113489|ref|ZP_08242270.1| Chromosomal replication initiator protein DnaA [Acetobacter pomorum DM001] gi|326697314|gb|EGE48974.1| Chromosomal replication initiator protein DnaA [Acetobacter pomorum DM001] Length = 477 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 177/468 (37%), Positives = 281/468 (60%), Gaps = 15/468 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E + + +RLK +VG Y +W ++ + + + L +PT FL+ W++++Y + ++ Sbjct: 21 LEESWLRICARLKGEVGEVEYRTWLTKIALGPIDGDEITLLLPTRFLRDWVRSQYGDRLS 80 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +L+ +E I+ VE+ V P+ S PS +P +P + Sbjct: 81 ELWNQEIPSIRRVELQVARAGDPAPIPLESVPSANAATPAQE--EATPAARTAPEVRSDL 138 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + LDSRF F TF+ G N A A+ +AE S +V NPLF++ VGLGKTHL+ Sbjct: 139 VTALDSRFTFDTFVVGKPNEFAYACARRVAEKPS----SVGFNPLFLYGGVGLGKTHLMH 194 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI I+ N+ V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL GK Sbjct: 195 AIGAELIQSG-NVSVAYMSAEKFMYRFIAAIRSQSTIEFKEQLRSVDVLMIDDLQFLIGK 253 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ + +E+R Sbjct: 254 DNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRI 313 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEI 392 SIL+++ A S + + +VL +A +T++ REL+GA N+L+ + F +T E Sbjct: 314 SILESKAAAS-----GVVVPGKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEA 368 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E+L ++ +++ IE+IQ+ VA+H+NI D+ S RR R V RPRQVAMYL+K + Sbjct: 369 TQEVLHDILK-AHDRRVTIEEIQKKVAEHWNIRLTDMSSARRARNVARPRQVAMYLAKQL 427 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGR+FG+RDHTTV+HAV +V +++ D ++VELL+R++ Sbjct: 428 TSRSLPEIGRKFGNRDHTTVMHAVNRVTELMGLDAAFAEDVELLRRML 475 >gi|258542326|ref|YP_003187759.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-01] gi|256633404|dbj|BAH99379.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-01] gi|256636463|dbj|BAI02432.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-03] gi|256639516|dbj|BAI05478.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-07] gi|256642572|dbj|BAI08527.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-22] gi|256645627|dbj|BAI11575.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-26] gi|256648680|dbj|BAI14621.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-32] gi|256651733|dbj|BAI17667.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654724|dbj|BAI20651.1| chromosomal replication initiator protein DnaA [Acetobacter pasteurianus IFO 3283-12] Length = 477 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 176/468 (37%), Positives = 281/468 (60%), Gaps = 15/468 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E + + +RLK +VG Y +W ++ + + + L +PT FL+ W++++Y + ++ Sbjct: 21 LEESWLRICARLKGEVGEVEYRTWLTKIALGPIDGDEITLLLPTRFLRDWVRSQYGDRLS 80 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +L+ +E I+ VE+ V P+ + PS +P +P + Sbjct: 81 ELWNQEIPSIRRVELQVARAGDPAPIPLENVPSTAAATPAQE--EATPAARTAPEVRSDL 138 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + LDSRF F TF+ G N A A+ +AE S +V NPLF++ VGLGKTHL+ Sbjct: 139 VTALDSRFTFDTFVVGKPNEFAYACARRVAEKPS----SVGFNPLFLYGGVGLGKTHLMH 194 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI I+ N+ V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL GK Sbjct: 195 AIGAELIQSG-NVSVAYMSAEKFMYRFIAAIRSQSTIEFKEQLRSVDVLMIDDLQFLIGK 253 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ + +E+R Sbjct: 254 DNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRI 313 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEI 392 SIL+++ A S + + +VL +A +T++ REL+GA N+L+ + F +T E Sbjct: 314 SILESKAAAS-----GVVVPGKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEA 368 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E+L ++ +++ IE+IQ+ VA+H+NI D+ S RR R V RPRQVAMYL+K + Sbjct: 369 TQEVLHDILK-AHDRRVTIEEIQKKVAEHWNIRLTDMSSARRARNVARPRQVAMYLAKQL 427 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGR+FG+RDHTTV+HAV +V +++ D ++VELL+R++ Sbjct: 428 TSRSLPEIGRKFGNRDHTTVMHAVNRVTELMGLDAAFAEDVELLRRML 475 >gi|86147175|ref|ZP_01065491.1| chromosomal replication initiation protein [Vibrio sp. MED222] gi|218708098|ref|YP_002415719.1| chromosomal replication initiation protein [Vibrio splendidus LGP32] gi|254777922|sp|B7VGI4|DNAA_VIBSL RecName: Full=Chromosomal replication initiator protein DnaA gi|85835059|gb|EAQ53201.1| chromosomal replication initiation protein [Vibrio sp. MED222] gi|218321117|emb|CAV17067.1| Chromosomal replication initiator protein dnaA [Vibrio splendidus LGP32] Length = 473 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 154/483 (31%), Positives = 260/483 (53%), Gaps = 28/483 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNGNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRIQG---VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--- 148 +L QE EI + V P E A + + T + + + + K Sbjct: 61 RLLQEYCGNDIPHLHFEIGNKRVTAPKSETIAPARTRTAADVAAESSAPAQLQARKPVHN 120 Query: 149 --------TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF Sbjct: 121 IWRDEEPVAVDLNHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAY-----NPLF 175 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++ Sbjct: 176 LYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV 235 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G Sbjct: 236 DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWG 295 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ Sbjct: 296 LTVAIEPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVI 350 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +F +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V Sbjct: 351 ANANFTGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSV 409 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ L R Sbjct: 410 ARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKEDYSNLIR 469 Query: 499 LIS 501 +S Sbjct: 470 TLS 472 >gi|75674200|ref|YP_316621.1| chromosomal replication initiation protein [Nitrobacter winogradskyi Nb-255] gi|123773117|sp|Q3SMV0|DNAA_NITWN RecName: Full=Chromosomal replication initiator protein DnaA gi|74419070|gb|ABA03269.1| chromosomal replication initiator protein, DnaA [Nitrobacter winogradskyi Nb-255] Length = 475 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 223/481 (46%), Positives = 309/481 (64%), Gaps = 15/481 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++ V RL++ VG D+Y+SWF R+ SV V LSVPT FLK+WI+ Y Sbjct: 1 MSDTEQERWSRVKGRLRSTVGEDIYSSWFARMDLESVHGESVRLSVPTRFLKSWIQAHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 E + +Q E + +++ VRS A P E A+ + S + + Sbjct: 61 ERVLSCWQAELPDVHRIDLTVRSAMRCAAPVREAPATDARHPERSEGRNGVELKTVATAP 120 Query: 148 QTISPVF--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + + GSPLD R F +F+ G SN +A AA+ +AE +V NPL+IHA V Sbjct: 121 ASANHDALGGSPLDPRLTFQSFVTGRSNTLAHAAARQVAE--GRRGDSVMFNPLYIHAGV 178 Query: 206 GLGKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLLQA+ NA +R RV+YLTAE FM+ F +A++ AL K++LR ID+ Sbjct: 179 GLGKTHLLQAVTWAGNAGTER----RVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDV 234 Query: 263 LLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V Sbjct: 235 LVIDDLQFLQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVV 294 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 +G E+R IL++R+ ++ ++ E VL ++A+ +T +GR+L+GA N+L+ Sbjct: 295 EMGSLGEELRLGILRSRVEAARVHHASFDVPEPVLDYLAKAITHNGRDLEGAINRLLAHS 354 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 A +T E+A+ + LV E ++++IEDIQR+VA+ YN+SR+DLLS+RR VVRP Sbjct: 355 KLNAQPVTLEMAEREVRDLVRPQEPRRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRP 414 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVELLKR + Sbjct: 415 RQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVSKDTTLSDEVELLKRQLQ 474 Query: 502 E 502 E Sbjct: 475 E 475 >gi|90421529|ref|YP_529899.1| chromosomal replication initiation protein [Rhodopseudomonas palustris BisB18] gi|123395361|sp|Q21DF6|DNAA_RHOPB RecName: Full=Chromosomal replication initiator protein DnaA gi|90103543|gb|ABD85580.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris BisB18] Length = 473 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 220/471 (46%), Positives = 304/471 (64%), Gaps = 7/471 (1%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++ V RL++ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y + + Sbjct: 6 QDRWSRVKGRLRSSVGEDVYSSWFARMDLESVQPESVHLSVPTRFLKSWIQTHYSDRVLS 65 Query: 96 LFQEEHSRIQGVEILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +Q E ++ V++ VR+ A P+ + A + + + I T Sbjct: 66 CWQAEMPQVHRVDLTVRTAMRCAAPAKDAPAHAEPRRDDGRPAPELRATAIAPVSATHEA 125 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + GSPLD R F +F+ G SN +A AA+ +AE V NPL+IH+ VGLGKTHL Sbjct: 126 LGGSPLDPRLTFGSFVIGRSNTLAHAAARQVAE--GRRGDPVMFNPLYIHSGVGLGKTHL 183 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 LQA+ A +V+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+QFLQ Sbjct: 184 LQAVTWAG-NSGTERKVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVIDDLQFLQ 242 Query: 273 GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 GK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V + ++R Sbjct: 243 GKTTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDERVRSRLAGGLVVEMASLGEDLR 302 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 ILK+R+ ++ ++ VL ++ART+T +GR+L+GA N+L+ A +T E Sbjct: 303 LGILKSRVTAARAHHASFDVPLPVLEYLARTITHNGRDLEGAINRLLAHSKLNAQPVTLE 362 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ + LV E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+K Sbjct: 363 MAEREIRDLVRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYLAKT 422 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D L EVELLKR + E Sbjct: 423 LTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVAKDTALSDEVELLKRQLQE 473 >gi|91974483|ref|YP_567142.1| chromosomal replication initiation protein [Rhodopseudomonas palustris BisB5] gi|123722287|sp|Q13F98|DNAA_RHOPS RecName: Full=Chromosomal replication initiator protein DnaA gi|91680939|gb|ABE37241.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris BisB5] Length = 472 Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 215/467 (46%), Positives = 302/467 (64%), Gaps = 6/467 (1%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY+SWF R+ +V VHLSVPT FLK+WI+ Y E + +Q Sbjct: 9 WSRVKGRLRSSVGEDVYSSWFARMDLEAVQQESVHLSVPTRFLKSWIQTHYSEKVLTCWQ 68 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF--GS 156 E + +++ VRS +V K A +P+ + + GS Sbjct: 69 AEMPEVCRIDLTVRSPMRAAVTKEAPAPAEHRRDEHRPAADARSHAAAPAPSNHDALGGS 128 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD R F++F+ G SN +A AA+ +AE V NPL+IH+ VGLGKTHLLQA+ Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGLGKTHLLQAV 186 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 A +V+YLTAE FM+ F ++++ +L K++LR ID+L+IDD+QFLQGK Sbjct: 187 TWAG-NSGTERKVLYLTAEKFMYGFVASLKTQTSLAFKEALRGIDVLVIDDLQFLQGKTT 245 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EFCH LN+L+D+ +QVV AADRPP++LESLD R+RSRL GG+ V + E+R IL Sbjct: 246 QAEFCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMAPLGEELRLGIL 305 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 K+R+ ++ ++ + VL ++AR +T +GR+L+GA N+L+ A +T E+A+ Sbjct: 306 KSRVVAARTHHASFDVPQSVLEYLARAITHNGRDLEGAINRLLAHSKLNAQPVTLEMAEH 365 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+K +T R Sbjct: 366 EVRDLIRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYLAKTLTLR 425 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIGRRFG RDHTTVLHAVRK+E ++ D+TL EVE LKR + E Sbjct: 426 SLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDVTLSDEVESLKRQLQE 472 >gi|262167100|ref|ZP_06034815.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC27] gi|262024486|gb|EEY43172.1| chromosomal replication initiator protein dnaA [Vibrio cholerae RC27] Length = 444 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 150/455 (32%), Positives = 245/455 (53%), Gaps = 22/455 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I +L E E+ R Sbjct: 1 MWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNINRLLMEFSGNDVPNLRFEVGSRP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPII-----LGKQTISPVFGSPLDSRFVFSTFI 168 V P ++ + S +++ I S ++ + F+ F+ Sbjct: 60 VVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSAAADITHRSNVNPKHKFNNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++ L AA+ +++ Y NPLF++ GLGKTHLL A+ NA + PN + Sbjct: 120 EGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+L Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 234 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ED Sbjct: 235 LEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAED 289 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 ++++ +EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 HQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQ-E 348 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 349 KLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGG 408 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 RDHTTVLHACRKIEQLREESHDIKEDYSNLIRTLS 443 >gi|259417770|ref|ZP_05741689.1| chromosomal replication initiator protein DnaA [Silicibacter sp. TrichCH4B] gi|259346676|gb|EEW58490.1| chromosomal replication initiator protein DnaA [Silicibacter sp. TrichCH4B] Length = 470 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 166/473 (35%), Positives = 274/473 (57%), Gaps = 13/473 (2%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + ++ RL VG + + +W + L+ V + VPTNF+ ++ + + I Sbjct: 2 TDDTWGLLRKRLLKTVGQNNFTTWIEPLELDQVDGGVATFHVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNI-----SKSPIILGKQT 149 F + +Q + V + + + S +I + +P T I ++ K Sbjct: 62 HEFNKSGEPVQRLAFKVAANSPTRPVQPTVSEAIEEPTPAPTTIVDQGTTQEGNASVKSP 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + + +PLD RF F +F+ G N +A AA+ + E V NPL ++ VGLGK Sbjct: 122 LEELQAAPLDPRFTFDSFVVGKPNELAHAAARRVGEG-----GPVTFNPLVLYGGVGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AIA +R P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+Q Sbjct: 177 THLMHAIAWELKERNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQ 236 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L D Sbjct: 237 FIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTD 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 YE+R IL+ ++ ++K P L I + VL +A ++T+ R L+GA +L S Sbjct: 297 YELRLGILQTKVQQNRKNYPDLKIADGVLELLAHRISTNVRVLEGALTRLFAFASLVGRE 356 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ + L+ ++ +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMY Sbjct: 357 IDMDLTQDCLADVLRAS-ERKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVAMY 415 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L K +T RS PEIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R + Sbjct: 416 LCKQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRRSL 468 >gi|292490171|ref|YP_003525610.1| chromosomal replication initiator protein DnaA [Nitrosococcus halophilus Nc4] gi|291578766|gb|ADE13223.1| chromosomal replication initiator protein DnaA [Nitrosococcus halophilus Nc4] Length = 450 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 150/468 (32%), Positives = 246/468 (52%), Gaps = 25/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ + L+ ++ + ++ + L+ N+ L P F+ W+++ I L Sbjct: 4 SLWEHCLNHLEGELDLQEFNTYIRPLQAIQQDSNL-RLYAPNQFVVDWVQDCAESRINAL 62 Query: 97 FQEE-HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 RI+ + V S +P SP+ S+SP + I + Sbjct: 63 LSHYSDGRIEKAILEVGSC----------NPQPQAPSPVPELPSESPFAPSPRGIDRIPE 112 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F+ F+EG SN++ A+ +AE Y NPLFI+ VGLGKTHL+ A Sbjct: 113 SRLNKNYTFNNFVEGKSNQLPRAASYQVAENPGSAY-----NPLFIYGGVGLGKTHLMHA 167 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N R P+ RV YL +E F+ A++ N K R++D+LLIDD+QF GK Sbjct: 168 VGNYIRTRSPDARVAYLHSEQFVAEMIKALQLNAINEFKARYRSVDVLLIDDIQFFAGKE 227 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N+LL+ Q++ DR P E+ L+ R++SR G++V + + E R + Sbjct: 228 RSQEEFFYTFNTLLEVQHQIILTCDRFPKEVNGLEERLKSRFGWGLTVAVEPPELETRVA 287 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL +++ + ++++V + R + ++ REL+GA +++ F +T E+ Sbjct: 288 IL-----MNKANIESVALSDDVAFFLGRLIYSNVRELEGALRRVIAYSRFTRRPITMELT 342 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ K + IE+IQ+ VA++Y I +DL S RR R + RPRQ+AM LSK +T Sbjct: 343 REALKDLLALQ-EKLVTIENIQKTVAEYYKIRVSDLPSKRRSRAIARPRQIAMTLSKELT 401 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S EIG+ FG RDHTTVLHA RK++++ TD + ++ + L + +S Sbjct: 402 DHSLTEIGKSFGGRDHTTVLHACRKIDELKRTDRRVAEDYQNLLKRLS 449 >gi|85713964|ref|ZP_01044953.1| chromosomal replication initiator protein, DnaA [Nitrobacter sp. Nb-311A] gi|85699090|gb|EAQ36958.1| chromosomal replication initiator protein, DnaA [Nitrobacter sp. Nb-311A] Length = 509 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 223/487 (45%), Positives = 314/487 (64%), Gaps = 15/487 (3%) Query: 25 DVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAW 84 + + + + ++ V RL++ VG D+Y+SWF R+ SV V LSVPT FLK+W Sbjct: 29 EKSSQEMSDIEQERWSRVKGRLRSTVGEDIYSSWFARMDLESVHGESVRLSVPTRFLKSW 88 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVAL-PSVEKTASSPSITKLSPIN----TNIS 139 I+ Y E + +Q E + +++ VRS + + A +P + +L T + Sbjct: 89 IQAHYAERVLACWQAELPDVHRIDLTVRSAMRCAAPVREAPAPDVRRLERGEGRDGTELK 148 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + GSPLD R F +F+ G SN +A AA+ +AE +V NPL Sbjct: 149 TVATAPASANHDALGGSPLDPRLTFQSFVTGRSNALAHAAARQVAE--GRRGDSVMFNPL 206 Query: 200 FIHASVGLGKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 +IHA VGLGKTHLLQA+ NA +R RV+YLTAE FM+ F +A++ AL K++ Sbjct: 207 YIHAGVGLGKTHLLQAVTWAGNAGTER----RVLYLTAEKFMYGFVAALKTQTALAFKEA 262 Query: 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 LR ID+L+IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL Sbjct: 263 LRGIDVLVIDDLQFLQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRL 322 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 GG+ V +G E+R IL++R+ ++ ++ E+VL ++A+T+T +GR+L+GA N Sbjct: 323 AGGLVVEMGSLGEELRLGILRSRVEAARAHHASFDVPEQVLDYLAKTITHNGRDLEGAIN 382 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 +L+ A +T E+A+ + LV E ++++IEDIQR+VA+ YN+SR+DLLS+RR Sbjct: 383 RLLAHSKLNAQPVTLEMAEREVRDLVRPQEPRRIKIEDIQRVVARQYNVSRSDLLSSRRT 442 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 VVRPRQVAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D+TL EVEL Sbjct: 443 ANVVRPRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVSKDVTLSDEVEL 502 Query: 496 LKRLISE 502 LKR + E Sbjct: 503 LKRQLQE 509 >gi|229917455|ref|YP_002886101.1| chromosomal replication initiator protein DnaA [Exiguobacterium sp. AT1b] gi|259645250|sp|C4KZZ3|DNAA_EXISA RecName: Full=Chromosomal replication initiator protein DnaA gi|229468884|gb|ACQ70656.1| chromosomal replication initiator protein DnaA [Exiguobacterium sp. AT1b] Length = 459 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 158/472 (33%), Positives = 265/472 (56%), Gaps = 20/472 (4%) Query: 34 NCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N I+ V S ++ + + W + + S++ + +S P +F+ W++ +YL Sbjct: 3 NAREIWRNVLSVIEEEERTPKASFDMWLKSTEGISLMGTTLVVSAPASFIVTWLERQYLS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 L Q+ I ++ + + K A + + S T + P++L + Sbjct: 63 ----LLQDTVEEITNNKLEIHFIEESQAHKYAPADGSSNESIAVTETKEQPVLLPSKEEG 118 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ +++F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 119 DL--GQLNDKYIFETFVIGSGNRFAHAASLAVAEAPARAY-----NPLFIYGGVGLGKTH 171 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + ++P R+ Y+++E F F ++IRDN ++ RNID+LLIDD+QFL Sbjct: 172 LMHAIGHYVKGQKPGARIAYVSSEKFTNEFINSIRDNKTGEFRNRYRNIDVLLIDDIQFL 231 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L + KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 232 AGKEQTQEEFFHTFNALHNDQKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLE 291 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL+ + L+I+ EV++++A + T+ REL+GA ++V + Sbjct: 292 TRIAILRK-----KATAEGLDISNEVMLYIANQIDTNIRELEGALTRVVAYAKLVGRPID 346 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L +++ E KK+ I DIQ +V +H+NI +L S +R +T+ PRQ+AMYLS Sbjct: 347 PDVAAEALHNIMPVQEAKKIVIRDIQEVVGQHFNIQVEELNSKKRTKTLAFPRQIAMYLS 406 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT S P+IG FG RDHTTV+HA K+ +L+ D+ +++ ++ LK+ +S Sbjct: 407 REMTESSLPKIGEEFGGRDHTTVIHAHEKISTLLKNDVEMQETIQTLKKALS 458 >gi|224477956|ref|YP_002635562.1| chromosomal replication initiation protein [Staphylococcus carnosus subsp. carnosus TM300] gi|254777913|sp|B9DPX4|DNAA_STACT RecName: Full=Chromosomal replication initiator protein DnaA gi|222422563|emb|CAL29377.1| chromosomal replication initiator protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 453 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 151/472 (31%), Positives = 255/472 (54%), Gaps = 26/472 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQR--LKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ E I+ V KN++ P Y++WF+ + + N + V +NF++ ++K +Y Sbjct: 1 MSKEEIWDKVLELAKNELTPISYSTWFEPPKTELIDIQENTAIILVESNFVQDFLKKQYT 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I L ++ +++ + S+ + ++ P S Sbjct: 61 DIIADLIEKAIGTKLMPNFVIQEDLTEDKQVKDSAKAKSEAKPDVQAPQNSS-------- 112 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 113 ----EDQFNVHNTFETFVIGPGNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ + +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF Sbjct: 164 HLMHAIGHYVLENNRDAKVIYTSSEKFTNEFIKSIRDNETEQFREKYRNIDVLLIDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 +Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DY Sbjct: 224 IQNKEQTQEEFFHTFNDLHQTGKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDY 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +IL+ + E+ ++I E L ++A + ++ REL+GA +++ + Sbjct: 284 ETRMAILQK-----KLEEEDVDIPLESLTYIANQIQSNIRELEGALTRVIAYSRLQNEAI 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+ E L ++ T ++KK+ I+DIQ++V ++YN+ D + +R +++ PRQ+AMYL Sbjct: 339 TTELTAEALKDIIQTPKSKKITIQDIQKVVGQYYNVRLEDFAAKKRTKSIAYPRQIAMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ +T S P+IG FG RDHTTV+HA K++ + D K+EVE L++ I Sbjct: 399 SRELTDFSLPKIGEEFGGRDHTTVIHAHMKIQTDMSEDPIFKQEVENLEKEI 450 >gi|312958103|ref|ZP_07772626.1| hypothetical protein PFWH6_0001 [Pseudomonas fluorescens WH6] gi|311287534|gb|EFQ66092.1| hypothetical protein PFWH6_0001 [Pseudomonas fluorescens WH6] Length = 505 Score = 482 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 157/513 (30%), Positives = 259/513 (50%), Gaps = 60/513 (11%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRVLEL 62 Query: 97 FQEEHSRIQG-VEILVRS----------------------------------------VA 115 E + + + +L+ S + Sbjct: 63 LDEHGNGLAPALSLLIGSKRSSAPRAAPNAPLAAAASQAQAAAAPAAAAPAPAPARSKSS 122 Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEG 170 P PS P+ S+ + +Q V G S L+ F F F+EG Sbjct: 123 APKNAPENEEPSRDSFDPMAGASSQQAPVRAEQRTVQVEGALKHTSYLNRTFTFENFVEG 182 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VV Sbjct: 183 KSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVV 237 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 YL +E F+ A++ N K R++D LLIDD+QF K Q EF H +LL+ Sbjct: 238 YLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHPFTALLE 297 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + + K Sbjct: 298 GGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAK 352 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 +++ + +A+ + ++ REL+GA +++ F +T E+ E L L+ K Sbjct: 353 VDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKL 411 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RD Sbjct: 412 VSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRD 471 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 HTTVLHACRKINELKESDADIREDYKNLLRTLT 504 >gi|119896293|ref|YP_931506.1| chromosomal replication initiation protein [Azoarcus sp. BH72] gi|166201859|sp|A1K1B4|DNAA_AZOSB RecName: Full=Chromosomal replication initiator protein DnaA gi|119668706|emb|CAL92619.1| chromosomal replication initiator protein [Azoarcus sp. BH72] Length = 480 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 141/487 (28%), Positives = 248/487 (50%), Gaps = 33/487 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN---IVHLSVPTNFLKAWIKNRYLET 92 + + +RL+ ++ + +W + L+ + + L+ P F+ W++ RY+ Sbjct: 3 QDFWPFCLARLEQELPQQQFNTWIKTLQAAESDADGAVALTLTAPNRFVLQWVRERYMRR 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTAS-----------------SPSITKLSPIN 135 I +L +E H + +E+ + S + +P +++ +P Sbjct: 63 IGELGEEFHGQPIQLELQLPVAGAKSAPVAPARVRPAGANGGAAANSPMAPPVSEAAPPQ 122 Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + S + L++ F F T + G +N +A AA +A+ Y Sbjct: 123 IIVRPSEPEPVSANELAYDKTRLNADFTFDTLVTGRANDLARAAAMQVAQNPGTSY---- 178 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLF++ VGLGKTHL+ AI NA + P + + Y+ E + A + K Sbjct: 179 -NPLFVYGGVGLGKTHLVHAIGNAVYRHNPRMVIRYVHVEDYYADVVRAYQQKSFDAFKR 237 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R++D+L+IDD+QF K Q EF H N+L ++ KQ+V D P +++ L+ R+ S Sbjct: 238 YYRSLDMLIIDDIQFFNNKNRTQEEFFHAFNALTEAKKQIVITCDTYPKDIQGLEDRLIS 297 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + + EMR +IL+ + E +++++++V +A+ + ++ REL+GA Sbjct: 298 RFDWGLTVQIEPPELEMRVAILQK-----KAEALRVSVDDDVAFLIAKNLRSNVRELEGA 352 Query: 375 FNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N++V F ++ E+A E L L++ +++ IE IQ+ VA +Y I D+ S + Sbjct: 353 LNKVVAYARFHGRGISLEVAKEALKDLLH-AHNRQLSIEHIQKTVADYYKIKVADMHSKK 411 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R + RPRQVAM+L+K +TP S P IG FG RDHTTVLHA R + ++ D L +V Sbjct: 412 RTRVIARPRQVAMWLAKELTPMSLPAIGEAFGGRDHTTVLHACRTITELRLGDHQLNHDV 471 Query: 494 ELLKRLI 500 +L +++ Sbjct: 472 HVLTQVL 478 >gi|115522031|ref|YP_778942.1| chromosomal replication initiation protein [Rhodopseudomonas palustris BisA53] gi|122298220|sp|Q07VS2|DNAA_RHOP5 RecName: Full=Chromosomal replication initiator protein DnaA gi|115515978|gb|ABJ03962.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris BisA53] Length = 474 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 220/475 (46%), Positives = 304/475 (64%), Gaps = 14/475 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++ V RL+ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y E + Sbjct: 6 QERWSRVKGRLRTTVGEDVYSSWFARMDLESVQQESVHLSVPTRFLKSWIQTHYSERVLS 65 Query: 96 LFQEEHSRIQGVEILVRSV---ALPSVEKTAS-SPSITKLSPINTNISKSPIILGKQTIS 151 +Q E + +++ VR+ A P+ E+ A P ++ S Sbjct: 66 CWQAEMPEVHRIDLTVRTAMRCAAPAKEQAAPIEPRREDNRAAAHDLRVSATAPVSANHE 125 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + GSPLD R FS+F+ G SN +A AA+ +AE V NPL+IH+ VGLGKTH Sbjct: 126 ALGGSPLDPRLTFSSFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGLGKTH 183 Query: 212 LLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 LLQA+ N+ ++R +V+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+ Sbjct: 184 LLQAVTWAGNSGLER----KVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDVLVIDDL 239 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V + Sbjct: 240 QFLQGKTTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDERVRSRLAGGLVVEMASLG 299 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E+R ILK+R+ ++ + VL ++A ++T +GR+L+GA N+L+ A Sbjct: 300 EELRLGILKSRVTAARAHHASFEVPLPVLEYLAHSITHNGRDLEGAINRLLAHSKLNAQP 359 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMY Sbjct: 360 VTLEMAEREVRDLIRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMY 419 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D L EVE LKR + E Sbjct: 420 LAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDAALSDEVESLKRQLQE 474 >gi|159045913|ref|YP_001534707.1| chromosomal replication initiation protein [Dinoroseobacter shibae DFL 12] gi|157913673|gb|ABV95106.1| chromosomal replication initiation protein [Dinoroseobacter shibae DFL 12] Length = 460 Score = 481 bits (1239), Expect = e-133, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 263/468 (56%), Gaps = 13/468 (2%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E + V + L VG + Y +W + LKF +V P++F+ W+ Y E I Sbjct: 2 TEDTWGSVQNDLLKTVGQNNYLTWIEPLKFADCRGGVVRFEAPSSFVGNWVARNYREDIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ +E V +A + + T P+ + Sbjct: 62 HHLVSAGVEVKRIEFDVAKLAQAARQVRPKGTERTMTPSPGDVAMDKPVPSAS-----LQ 116 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 +PLD R FS F+ G N +A +A+ +AE V NPLF++ VGLGKTHL+ Sbjct: 117 SAPLDPRLTFSNFVVGKPNELAHASARRVAEG-----GPVSFNPLFLYGGVGLGKTHLMH 171 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA + R P L+V+YL+AE FM+RF A+RD + K+ R++DLL++DD+QF+ GK Sbjct: 172 AIAWEAQARNPGLKVLYLSAEQFMYRFVRALRDRNTMEFKELFRSVDLLMVDDVQFIAGK 231 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ++ +ADR P E++ L+ RI+SRL G+ V + DYE+R Sbjct: 232 DSTQDEFFHTFNALVDQNKQIIISADRAPGEIDGLEDRIKSRLSCGLVVDIHPTDYELRL 291 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +L+ RL + + + VL +A+ ++T+ R L+GA N+L+ +T ++ Sbjct: 292 GVLQQRLQDQIAAGETIAVEDGVLECLAQRISTNVRVLEGALNRLIAFSDLVGRRITLDL 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E LS L+ KK+ +++I + VAK+YN+ DLL RR RT+ RPRQ+AMYL+K + Sbjct: 352 AHEALSDLIR-AHDKKVTVDEIMQAVAKYYNLRMTDLLGPRRTRTIARPRQLAMYLAKTL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGRRFG RDHTTV+HAV+++E + ++D + ++V L R + Sbjct: 411 TTRSLPEIGRRFGGRDHTTVIHAVKRIEALCDSDPQISEDVRSLLRTL 458 >gi|150387854|ref|YP_001317903.1| chromosomal replication initiation protein [Alkaliphilus metalliredigens QYMF] gi|167016895|sp|A6TJ76|DNAA_ALKMQ RecName: Full=Chromosomal replication initiator protein DnaA gi|149947716|gb|ABR46244.1| chromosomal replication initiator protein DnaA [Alkaliphilus metalliredigens QYMF] Length = 448 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 260/473 (54%), Gaps = 29/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N I+ + +K ++ + +W + ++ S+ + + L VP +F + + RY Sbjct: 1 MHDNLPQIWEKAINLIKTELTEVSFNTWVKPIQAISLDNETLVLGVPNDFTQGILNARYN 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I+ ++ S+ V I+V S + ++ SPI N SP+I Sbjct: 61 TLISNAVKQVTSKNYEVHIVVPSEERVGDTQNINARRSNAQSPIMGN---SPLI------ 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 112 -------LNPKYTFDTFVIGNSNRFAHAASVAVAESPAKAY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F ++IRD+ + ++ RN+D+LL+DD+QF Sbjct: 160 HLMNAIGHYILANNPKAKVVYVSSETFTNELINSIRDDRNVEFRNRYRNVDVLLVDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L +S KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 220 IAGKERTQEEFFHTFNALHESNKQIIISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + + + +EV H+A+ + ++ REL+GA ++V S + Sbjct: 280 ETRIAILRK-----KAQMENIYVPDEVTAHIAKKIQSNIRELEGALIRIVAYSSLTNSEV 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L + T + + + + I+ +V+ H++I D S +R R++ PRQVAMYL Sbjct: 335 TVELASEALKEIF-TSKPRLLNVPLIKEVVSNHFSIKLEDFDSKKRTRSISYPRQVAMYL 393 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IG FG RDHTTV+HA K+ + +D LK +++ + + + Sbjct: 394 TRELTDLSLPKIGDEFGGRDHTTVMHAHSKIVNEINSDSDLKNKLDAIIKELK 446 >gi|77456229|ref|YP_345734.1| chromosomal replication initiation protein [Pseudomonas fluorescens Pf0-1] gi|123772395|sp|Q3KKG1|DNAA_PSEPF RecName: Full=Chromosomal replication initiator protein DnaA gi|77380232|gb|ABA71745.1| chromosomal replication initiator protein DnaA [Pseudomonas fluorescens Pf0-1] Length = 507 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 156/515 (30%), Positives = 254/515 (49%), Gaps = 62/515 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L+ ++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLREELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRVLEL 62 Query: 97 FQEEHSRI-------------------------------------------QGVEILVRS 113 E + + Sbjct: 63 LDEHGNGLAPSLSLLIGSKRSSAPRAAPNAPLAAAQVSQAQANAAPASAPAPAPTPAPTK 122 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFI 168 E+ + PS P+ S+ + +Q V G S L+ F F F+ Sbjct: 123 RTTQKTEEISEEPSRDSFDPMAGAASQQAPVRAEQRTVQVEGALKHTSYLNRTFTFENFV 182 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN + Sbjct: 183 EGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAK 237 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF H N+L Sbjct: 238 VVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNAL 297 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + + Sbjct: 298 LEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQ 352 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 K+ + + +A+ + ++ REL+GA +++ F +T E+ E L L+ Sbjct: 353 AKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-D 411 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG Sbjct: 412 KLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGG 471 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 RDHTTVLHACRKINELKESDADIREDYKNLLRTLT 506 >gi|110677616|ref|YP_680623.1| chromosomal replication initiation protein [Roseobacter denitrificans OCh 114] gi|123362395|sp|Q16DK6|DNAA_ROSDO RecName: Full=Chromosomal replication initiator protein DnaA gi|109453732|gb|ABG29937.1| chromosomal replication initiator protein DnaA [Roseobacter denitrificans OCh 114] Length = 454 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 172/466 (36%), Positives = 276/466 (59%), Gaps = 19/466 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + RL VG + Y +W + ++F S + VPTNFL ++ + + I + Sbjct: 6 WGQLQQRLLKTVGQNNYKNWIEPIEFGSTQDGVATFEVPTNFLGNYVSQNFADLILHEVR 65 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 +E ++ + V PS + P+ P ++P ++ + +PL Sbjct: 66 QEDPAVRRLRFAV-----PSHVNATTKPA----RPAQATAPRAPAEKTPRST--LSTAPL 114 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+RF F FI G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 115 DARFTFDNFIVGKPNELAHAAAKRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHAIAH 169 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 R+P + V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Q Sbjct: 170 ELRLRRPEMNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKGSTQ 229 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D KQ++ + DR P E++ ++ R++SRLQ G+ V L DYE+R IL+ Sbjct: 230 EEFFHTFNALVDQNKQIIISGDRAPGEIKDMEERVKSRLQCGLVVDLHPTDYELRLGILQ 289 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 +++ +K P L+I++ VL +A ++T+ R L+GA +L S + E+ + Sbjct: 290 SKVEQQRKNYPGLDISDGVLEFLAHRISTNVRVLEGALTRLCAFASLVGREIDMELTQDC 349 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LS ++ +K+ +E+IQR V+ HYNI +D++ +R+R+ RPRQVAMYLSK MT RS Sbjct: 350 LSDVLRAS-ERKITVEEIQRKVSDHYNIRLSDMIGPKRLRSYARPRQVAMYLSKKMTSRS 408 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIGRRFG RDHTTV+H V+++E++ D + +++ELL+R + E Sbjct: 409 LPEIGRRFGGRDHTTVMHGVKRIEELKIQDGQIAEDLELLRRALEE 454 >gi|165975458|ref|YP_001651051.1| chromosomal replication initiation protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875559|gb|ABY68607.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 494 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 154/474 (32%), Positives = 257/474 (54%), Gaps = 25/474 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 LE S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++ Sbjct: 43 SLEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKF 101 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L I L + S+ + + +R P+ + P++ + + S Sbjct: 102 LAEIVDLAR-FLSKNDNLAVSIRVGIKPA-----------EHRPVSPSTTSSNSKEEVPE 149 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + F + L+ F F++G SN++A AQ +A+ + NP ++ GLGK Sbjct: 150 TNKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGK 205 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+Q Sbjct: 206 THLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQ 265 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 266 FFSNKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPE 325 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F Sbjct: 326 LETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQ 380 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM Sbjct: 381 ITIDAVREALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMS 439 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 440 LAKELTNHSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 493 >gi|126207489|ref|YP_001052714.1| chromosomal replication initiation protein [Actinobacillus pleuropneumoniae L20] gi|126096281|gb|ABN73109.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 494 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 153/474 (32%), Positives = 257/474 (54%), Gaps = 25/474 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 LE S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++ Sbjct: 43 SLEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKF 101 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L I L + S+ + + +R P+ + P++ + + S Sbjct: 102 LAEIVDLAR-FLSKNNDLAVSIRVGIKPA-----------EHRPVSPSTTSSNSKEEVPE 149 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + F + L+ F F++G SN++A AQ +A+ + NP ++ GLGK Sbjct: 150 TNKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGK 205 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+Q Sbjct: 206 THLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQ 265 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 266 FFANKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPE 325 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F Sbjct: 326 LETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQ 380 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM Sbjct: 381 ITIDAVREALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMA 439 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 440 LAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 493 >gi|163757767|ref|ZP_02164856.1| chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] gi|162285269|gb|EDQ35551.1| chromosomal replication initiation protein [Hoeflea phototrophica DFL-43] Length = 485 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 287/485 (59%), Positives = 359/485 (74%), Gaps = 20/485 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +F V +RLK QVG +++ SWF RLK S ++V LSVPT FLK+WI N+YL+ I+ Sbjct: 4 TNDVFERVMARLKAQVGQEIFTSWFGRLKLQSASKSVVRLSVPTAFLKSWINNKYLDQIS 63 Query: 95 KLFQEEHSRIQGVEILVRSV----ALPSVEKTASSPSITKLSPINTNISKSPIIL----- 145 L++EE + +EI+VRS A+ S AS P+ ++ +P + K + Sbjct: 64 ALYREEAPDVLKIEIVVRSATRSTAVSSAPDAASLPNASQATPGASASRKEQHVTVKGAG 123 Query: 146 --------GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 G Q + V GSPLD + F +++EGSSNRVAL AA++IAE G VR N Sbjct: 124 AKFGAFNKGPQAANAVIGSPLDPQCTFDSYVEGSSNRVALAAARTIAEA---GTGAVRFN 180 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFIH++VGLGKTHLLQAIA A+ N RVVYLTAEYFMWRFA+AIRDN AL+ K+SL Sbjct: 181 PLFIHSNVGLGKTHLLQAIAAAASSHSRNPRVVYLTAEYFMWRFATAIRDNDALSFKESL 240 Query: 258 RNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 RNIDLL+IDDMQFLQGK IQHEFCHLLN LLDSA+QVV AADR P ELESLDPR+RSRLQ Sbjct: 241 RNIDLLVIDDMQFLQGKSIQHEFCHLLNMLLDSARQVVVAADRAPWELESLDPRVRSRLQ 300 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 GGV++ + DYEMR IL+ RLAI+Q ED L+I+E +L HVA+ +T+SGREL+GAFNQ Sbjct: 301 GGVAIEIEAPDYEMRLEILRKRLAIAQMEDATLDIDETILAHVAQNITSSGRELEGAFNQ 360 Query: 378 LVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 L+FR SF P L+ E DELL HLVN GE K++RIEDIQR+V++HYN++R +L+S+RR R Sbjct: 361 LLFRRSFEPNLSIERVDELLGHLVNAGEPKRVRIEDIQRVVSRHYNVTRQELVSDRRTRV 420 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+PRQ+AMYL+K MTPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLK Sbjct: 421 IVKPRQIAMYLAKTMTPRSFPEIGRRFGGRDHTTVLHAVRKIEELINGDTKLGHEIELLK 480 Query: 498 RLISE 502 RLI E Sbjct: 481 RLIIE 485 >gi|159896534|ref|YP_001542781.1| chromosomal replication initiation protein [Herpetosiphon aurantiacus ATCC 23779] gi|226735818|sp|A9B496|DNAA_HERA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|159889573|gb|ABX02653.1| chromosomal replication initiator protein DnaA [Herpetosiphon aurantiacus ATCC 23779] Length = 472 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 255/476 (53%), Gaps = 18/476 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ L+NQ+ Y +W + SV +++ + P K I++R++ Sbjct: 1 MDTKQIWFTTLGTLQNQILRYDYDTWLKTTALVSVANDLAVIGAPNVTTKQVIEDRFMSV 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS------KSPIILG 146 + + E V +++ S E A +PS + S +P++ Sbjct: 61 LRRALGEVLGYQVNVRVIISSATPAPSEPVAVTPSEPSPTTEVAEPSFASFNQAAPMLNQ 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 P S L+ R+ FS+FI G+SNR+A A ++AE + Y NPLF++ VG Sbjct: 121 LPLGDPNRSSVLNPRYTFSSFIVGTSNRLAHAACMAVAEHPAQAY-----NPLFLYGGVG 175 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLLQAI N ++ R P + V+Y+++E F +AIR + RNID+LLID Sbjct: 176 LGKTHLLQAIGNYALDRNPEVNVLYVSSEKFTNDLINAIRRQQTEEFRIRYRNIDILLID 235 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N+L + KQ+V ++DRPP + +L+ R+RSR + G+ V + Sbjct: 236 DIQFIAGKEGTQEEFFHTFNTLHGAGKQIVLSSDRPPKAILTLEERLRSRFEWGLIVDVQ 295 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E R +IL+ ++ E ++ ++ EV+ +A+ + ++ REL+G N+++ + Sbjct: 296 NPDLETRTAILR-----AKGETLQVPVSSEVIDFLAQRIQSNIRELEGCLNRVIAYANLN 350 Query: 386 P-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T E+A L+ L++T K++ +DI R V++HY I + + R R VV PRQV Sbjct: 351 RTPVTVEVASAALADLLDTSRRKRVTADDIFREVSQHYGIDQRAIRGRGRSRNVVLPRQV 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + T S EIG G RDHTTV+H K+ L +D L+ ++ L++ + Sbjct: 411 VMYLLREETDASLVEIGELLGGRDHTTVMHGYNKITDDLTSDARLRNDITSLRQRL 466 >gi|126738627|ref|ZP_01754332.1| chromosomal replication initiation protein [Roseobacter sp. SK209-2-6] gi|126720426|gb|EBA17132.1| chromosomal replication initiation protein [Roseobacter sp. SK209-2-6] Length = 489 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 167/492 (33%), Positives = 272/492 (55%), Gaps = 32/492 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E + + +RL VG + + +W + L+F SV + VPTNF+ ++ + + I Sbjct: 2 TEEKWGQLRTRLLKTVGQNNFTTWIEPLEFSSVDDGVALFHVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK------- 147 F +Q + V + + + A P+ + + Sbjct: 62 HEFNLSGEPVQRLAFKVAANSPARPAREADQPAEPYAELTTAGHATGGTTDSRTDWAEAP 121 Query: 148 -----------------QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 +S + +PLD RF F +F+ G N +A AA+ +AE Sbjct: 122 SKSSASGSSLSAQASARDPLSSLQAAPLDPRFTFDSFVVGKPNELAHAAARRVAEG---- 177 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 V NPL ++ VGLGKTHL+ AIA ++ P+L V+YL+AE FM+RF A+R+ Sbjct: 178 -GPVTFNPLVLYGGVGLGKTHLMHAIAWELTEKNPHLNVLYLSAEQFMYRFVQALRERKM 236 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 ++ K R++D+L++DD+QF+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ Sbjct: 237 MDFKHLFRSVDVLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLE 296 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R++SRLQ G+ V L DYE+R IL+ ++ + Q P L I + VL +A ++T+ R Sbjct: 297 DRVKSRLQCGLVVDLHPTDYELRLGILQTKVQMQQATYPDLQIADGVLEFLAHRISTNVR 356 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 L+GA +L S + ++ + L+ ++ +K+ +E+IQR V+++YNI +D Sbjct: 357 VLEGALTRLFAFASLVGREIDMDLTQDCLADVLRAS-ERKITVEEIQRKVSEYYNIRMSD 415 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 ++ +R+R+ RPRQVAMYL K +T RS PEIGRRFG RDHTTV+H VR++E++ TD Sbjct: 416 IIGPKRLRSYARPRQVAMYLCKQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKSTDGQ 475 Query: 489 LKKEVELLKRLI 500 + ++VE+L+R + Sbjct: 476 IAEDVEMLRRSL 487 >gi|83642915|ref|YP_431350.1| chromosomal replication initiation protein [Hahella chejuensis KCTC 2396] gi|123767560|sp|Q2SQZ9|DNAA_HAHCH RecName: Full=Chromosomal replication initiator protein DnaA gi|83630958|gb|ABC26925.1| chromosomal replication initiator protein DnaA [Hahella chejuensis KCTC 2396] Length = 467 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 147/477 (30%), Positives = 253/477 (53%), Gaps = 22/477 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ L++++ + +W + L+ ++ L P F+ W+ +Y+ I Sbjct: 2 TSELWHQCLGYLEDELPAQQFNTWLRPLQAKGSEEELL-LFAPNRFVLDWVNEKYIGRIN 60 Query: 95 KLFQEEHSRI-QGVEILVRSVALPSVEKTASSPSI-------TKLSPINTNISKSPIILG 146 ++ E S+ + + + S+ S + AS S P+ +++ S Sbjct: 61 EILSELTSQKAPRISLKIGSITGNSKGQQASKDSAVGATRTTAPSRPVIADVAPSGERNV 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + S L+ F F TF+EG SN++A AA +A+ Y NPLF++ VG Sbjct: 121 TVEGAIKHESYLNPTFTFETFVEGKSNQLARAAAMQVADNPGSAY-----NPLFLYGGVG 175 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QA+ NA K+ PN +++YL +E F+ A++ N K R++D LLID Sbjct: 176 LGKTHLMQAVGNAIFKKNPNAKILYLHSERFVADMVKALQLNAFNEFKRLYRSVDALLID 235 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K Q EF H N+LL+ +Q++ DR P E++ ++ R++SR G++V + Sbjct: 236 DIQFFARKERSQEEFFHTFNALLEGGQQMILTCDRYPKEIDHMEERLKSRFGWGLTVMVE 295 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E R +IL + + E ++++ E +A+ + ++ REL+GA ++ F Sbjct: 296 PPELETRVAIL-----MKKAEQANVHLSSESAFFIAQKIRSNVRELEGALKLVIANAHFT 350 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T E L L+ K++ I++IQR VA++Y I D+LS RR R++ RPRQ+ Sbjct: 351 GQEITPAFIRECLKDLLAL-HEKQVSIDNIQRTVAEYYKIRIADILSKRRTRSITRPRQM 409 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L+K +T S PEIG FG RDHTTVLHA + + ++ ++D TL+ + + R+++ Sbjct: 410 AMALAKELTNHSLPEIGEAFGGRDHTTVLHACKVMIELQQSDPTLRDDYQNFMRMLT 466 >gi|320180043|gb|EFW54985.1| Chromosomal replication initiator protein DnaA [Shigella boydii ATCC 9905] gi|320185533|gb|EFW60299.1| Chromosomal replication initiator protein DnaA [Shigella flexneri CDC 796-83] Length = 439 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 145/446 (32%), Positives = 234/446 (52%), Gaps = 21/446 (4%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRSVALPSVEKT 122 + N + L P F+ W++++YL I L E+ + V Sbjct: 4 ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAV 63 Query: 123 ASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 S+ + +P P + S ++ + F F+EG SN++A Sbjct: 64 TSNVAAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLAR 123 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F Sbjct: 124 AAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERF 178 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 + A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ Sbjct: 179 VQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIIL 238 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 +DR P E+ ++ R++SR G++V + + E R +IL + + ++ + + EV Sbjct: 239 TSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEV 293 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQ 415 +A+ + ++ REL+GA N+++ +F +T + E L L+ K + I++IQ Sbjct: 294 AFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EKLVTIDNIQ 352 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA Sbjct: 353 KTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHA 412 Query: 476 VRKVEKMLETDITLKKEVELLKRLIS 501 RK+E++ E +K++ L R +S Sbjct: 413 CRKIEQLREESHDIKEDFSNLIRTLS 438 >gi|326402149|ref|YP_004282230.1| chromosomal replication initiator protein DnaA [Acidiphilium multivorum AIU301] gi|325049010|dbj|BAJ79348.1| chromosomal replication initiator protein DnaA [Acidiphilium multivorum AIU301] Length = 490 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 170/475 (35%), Positives = 281/475 (59%), Gaps = 20/475 (4%) Query: 32 EVNCESI---FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 E++ + + ++ V RL+ ++G Y +W ++ H + + V + +PT FL+ W+ Sbjct: 30 EISQDELAHQWSRVRGRLQEEIGEVEYRNWLRQAVLHGLDGDEVTVMLPTRFLRDWVNKE 89 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y +T +Q E+ ++ V+I R + +P + ++ P + + Sbjct: 90 YGNLLTAFWQAENPAVRRVDIRTRPAGT-----SERAPDLAEVEPKTAIARPAAAARREA 144 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P +PLD RF F TF+ G N A A+ +A+ G+ + NPLF++ VGLG Sbjct: 145 EERPDMSAPLDPRFTFDTFVVGKPNEFAYACARRVAD----GHASPGFNPLFLYGGVGLG 200 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AIA +R + V Y++AE FM +F SA+R + K+ LR++D+L++DD+ Sbjct: 201 KTHLMHAIAWELSQRSDEVTVAYMSAEKFMHKFVSALRRQSTIEFKNELRSVDVLMVDDL 260 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L+DS KQ++ +AD+ PS+L ++ R+R+RL G+ + Sbjct: 261 QFLIGKDGTQEEFFHTFNALVDSGKQIIVSADKSPSDLSGIEDRLRTRLGCGMVADVHAT 320 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 YE+R +IL+ ++ + + V+ +A+ +T + REL+GA N+L+ + F Sbjct: 321 TYELRLAILE-----AKAARAGVVVPGRVMEFLAQKITANVRELEGALNRLIAHANLFER 375 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E A E+L L+ +K+ IE+IQ+ VA+HYNI +++ S RR R + RPRQ+AM Sbjct: 376 PVTLETAHEVLHDLLR-AYDRKITIEEIQKQVAEHYNIRVSEMSSARRARNIARPRQIAM 434 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL+K +T RS PEIGR+FG+RDHTTV+HAV KV +++E D ++VELL+R+++ Sbjct: 435 YLAKQLTSRSLPEIGRKFGNRDHTTVMHAVSKVTELIEADPDFAEDVELLRRILT 489 >gi|296115229|ref|ZP_06833870.1| chromosomal replication initiator protein DnaA [Gluconacetobacter hansenii ATCC 23769] gi|295978330|gb|EFG85067.1| chromosomal replication initiator protein DnaA [Gluconacetobacter hansenii ATCC 23769] Length = 484 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 176/495 (35%), Positives = 295/495 (59%), Gaps = 22/495 (4%) Query: 13 NDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV 72 +E ++ + K L+++ ++ + +RLK +VG Y +W +++ V + + Sbjct: 3 GGLEGYDEVAEANAQKSILDIH----WSRICARLKAEVGEVEYNTWLRQMGVGPVDEDEI 58 Query: 73 HLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP---SIT 129 L +PT FL+ W++ +Y + + L+ E I+ VE+ V P+V+ AS+ + + Sbjct: 59 TLYLPTRFLRDWVRGQYGDRLGALWHAEIPAIRRVELQVARGPSPAVDGDASAAESGAPS 118 Query: 130 KLSPINTNISKSPIILGKQT--ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 +P + + ++ +T + +PLD RF F TF+ G N A A+ +AE Sbjct: 119 AATPPAMPVMDAVVVEEPRTAEVRSDLAAPLDPRFTFDTFVVGKPNEFAYACARRVAERP 178 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 S + NPLF++ VGLGKTHL+ AI + + R+ + V Y++AE FM+RF +AIR Sbjct: 179 S----SPGFNPLFLYGGVGLGKTHLMHAIGSE-LVREGRVSVAYMSAEKFMYRFIAAIRS 233 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 + K+ LR++D+L+IDD+QFL GK Q EF H N+L+D+ +Q+V +AD+ PS+L Sbjct: 234 QSTMEFKEQLRSVDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLS 293 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 L+ R+R+RL G+ + +E+R SIL+ ++ + + +VL +A +T+ Sbjct: 294 GLEDRLRTRLGCGMVADIHATTFELRISILE-----AKATASGVEVPAKVLEFLAHKITS 348 Query: 367 SGRELDGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 + REL+GA N+L+ + F +T E ++L ++ +++ IE+IQR VA+H+NI Sbjct: 349 NVRELEGALNRLIAHANLFGRPVTLETTQDVLHDILKAN-NRRVTIEEIQRKVAEHWNIR 407 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 D+ S RR V RPRQVAM+LSK +T RS PEIGR+FG+RDHTTV++AVR+V +++E Sbjct: 408 LTDMSSARRSTVVARPRQVAMFLSKQLTSRSLPEIGRKFGNRDHTTVIYAVRRVMELMEQ 467 Query: 486 DITLKKEVELLKRLI 500 D ++VELL+R++ Sbjct: 468 DPAFAEDVELLRRML 482 >gi|146280398|ref|YP_001170551.1| chromosomal replication initiation protein [Pseudomonas stutzeri A1501] gi|145568603|gb|ABP77709.1| chromosomal replication initiator protein DnaA [Pseudomonas stutzeri A1501] Length = 514 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 151/494 (30%), Positives = 250/494 (50%), Gaps = 41/494 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET---- 92 ++ L++++ + +W + L+ + + + P F+ W+ +YL Sbjct: 32 ELWQQCVELLRDELPAQQFNTWIRPLQVEG-DGDELRVYAPNRFVLDWVNEKYLSRLLEL 90 Query: 93 -------ITKLFQEEHSRIQ------------GVEILVRSVALPSVEKTASSPSITKLSP 133 + + + A + A + P Sbjct: 91 LSERSTGLAPALSLLIGSKRTSAAALPSAAAAARAQPQPAAAESAAPAAAVQQQAPRFEP 150 Query: 134 INTNISKSPIILGKQTISPVFG----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 + + ++T+ G S L+ F F F+EG SN++A AA +A+ H Sbjct: 151 LVAETPEPEPPRTERTVQVEGGLKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNPKH 210 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 GY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ A++ N Sbjct: 211 GY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNA 265 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +DR P E++ L Sbjct: 266 INEFKRFYRSVDALLIDDIQFFAKKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIDGL 325 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R++SR G++V + + E R +IL + + + K+++ + +A+ + ++ Sbjct: 326 EERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFFIAQRIRSNV 380 Query: 369 RELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +++ F +T E+ E L L+ K + +++IQR VA++Y I + Sbjct: 381 RELEGALKRVIAHAHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQRTVAEYYKIKIS 439 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK+ ++ ETD Sbjct: 440 DLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIAELRETDA 499 Query: 488 TLKKEVELLKRLIS 501 ++++ + L R ++ Sbjct: 500 DIREDYKNLLRTLT 513 >gi|190149270|ref|YP_001967795.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|189914401|gb|ACE60653.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 7 str. AP76] Length = 494 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 153/474 (32%), Positives = 257/474 (54%), Gaps = 25/474 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 LE S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++ Sbjct: 43 SLEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKF 101 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L I L + S+ + + +R P+ + P++ + + S Sbjct: 102 LAEIVDLAR-FLSKNNDLAVSIRVGIKPA-----------EHRPVSPSTTSSNSKEEVPE 149 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + F + L+ F F++G SN++A AQ +A+ + NP ++ GLGK Sbjct: 150 TNKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGK 205 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+Q Sbjct: 206 THLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQ 265 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 266 FFANKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPE 325 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F Sbjct: 326 LETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQ 380 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T + E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM Sbjct: 381 ITIDAVREALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMA 439 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 440 LAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 493 >gi|170717207|ref|YP_001783356.1| chromosomal replication initiation protein [Haemophilus somnus 2336] gi|168825336|gb|ACA30707.1| chromosomal replication initiator protein DnaA [Haemophilus somnus 2336] Length = 455 Score = 481 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 161/473 (34%), Positives = 258/473 (54%), Gaps = 24/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +++ S+L++QV + + +W + L+ V + + L P F+K W++N YL Sbjct: 4 MSSTVSTLWRDCLSQLQDQVSSNDFTTWLRPLQ-DDVSESNMILYAPNCFIKGWVENHYL 62 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ITKL Q+ + Q + ++ P+ + T + T+ + I+ Sbjct: 63 TQITKLAQQLLNNDQ-FMVKIQDGIKPTEKTTTNVEQKTQNENCHNEITSQQ-------- 113 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ VF F+EG SN++A AQ +A+ NPLF++ GLGKT Sbjct: 114 --NYRSYLNKNHVFDNFVEGKSNQLARAVAQKVAKNPGE----QSANPLFLYGGTGLGKT 167 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N + P+ +VVY+ AE FM + A++ + + K R +D LLIDD+QF Sbjct: 168 HLLHAVGNGILANNPHAQVVYMHAERFMQSYVKALKSDRMDSFKRFYRTVDALLIDDIQF 227 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF H+ NSL + +Q++ +DR P E+E ++ R++SR G+SV + + Sbjct: 228 FAGKDGTQEEFFHIFNSLFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPEL 287 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + E+ + + EEV M + + T+ REL+GA N++ F + Sbjct: 288 ETRVAIL-----LKKAEEKNMVLPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAI 342 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L ++ K + IE+IQ++VA +Y I +DL S RR R + RPRQ+AM L Sbjct: 343 TIDFVRETLKDMLALQ-DKLVTIENIQKIVADYYRIKISDLKSKRRSRNITRPRQLAMAL 401 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T RS PEIGR FGDRDHTTVLHA + + K+ E D ++++ L R +S Sbjct: 402 AKELTNRSLPEIGRNFGDRDHTTVLHACKAIAKLREEDNGIQEDWSNLIRTLS 454 >gi|297616215|ref|YP_003701374.1| chromosomal replication initiator protein DnaA [Syntrophothermus lipocalidus DSM 12680] gi|297144052|gb|ADI00809.1| chromosomal replication initiator protein DnaA [Syntrophothermus lipocalidus DSM 12680] Length = 436 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 255/473 (53%), Gaps = 46/473 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + I+ ++ ++GP + WF + +H + N + VP K WI++RYL Sbjct: 1 MSKDYSIIWETALDTVRQEIGPTSFEIWFSPVTYHDFVDNRYLIHVPNPLYKEWIESRYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + ++ E H V +++RS A P Sbjct: 61 HILERVLSELHREPIFVRLVLRS-------PEAVEPGALV-------------------- 93 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ G+SNR A A ++AE S Y NPLFI+ VGLGKT Sbjct: 94 -------LNRKYTFDTFVVGNSNRFAHAACYAVAEAPSDSY-----NPLFIYGGVGLGKT 141 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + +++ P+ ++VY+++E F +IRD ++ R++DLLL+DD+QF Sbjct: 142 HLMQAIGHHILRKDPSYKIVYVSSEQFTNDLIDSIRDRKTAEFRNKYRSVDLLLVDDIQF 201 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ+V ++DRPP ++ +L+ R+RSR + G+ + D+ Sbjct: 202 VAGKEQTQEEFFHTFNALYEANKQLVISSDRPPRDIPTLEDRLRSRFEWGLITDIQPPDF 261 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + N+ +V+ ++A + ++ REL+GA ++V + + Sbjct: 262 ETRLAILRK-----KAQLENFNVPNDVMSYIADYIQSNIRELEGALIRIVAYANISNQPV 316 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A++ L ++ G T+ + ++ I+ VA+++ + +L+S RR R +V PRQ+AM+L Sbjct: 317 TLELAEQTLKDVLALGNTRIITMQAIKETVAEYFGLKEEELISKRRTRHLVFPRQIAMFL 376 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MTP SFP+IG FG RDHTT LHA K+ ++ D +L K V + + + Sbjct: 377 CREMTPSSFPQIGEEFGGRDHTTALHAYEKISSDIQHDRSLLKIVTEIAKKLD 429 >gi|254503456|ref|ZP_05115607.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] gi|222439527|gb|EEE46206.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] Length = 492 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 227/495 (45%), Positives = 315/495 (63%), Gaps = 33/495 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E +T V +L+ ++G DV+ SWF R+ V LSVPT FLK WI+N Y E Sbjct: 5 EAGGSEQWTRVKKQLRAELGDDVFTSWFARVDLEEHQDGTVRLSVPTRFLKQWIQNNYNE 64 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII------- 144 + L+Q E + +E+ VR P + TA PS+ S N S Sbjct: 65 RLMGLWQRECDNVHRIELTVRGAIRPR-QVTAVQPSLPAGSAGAQNGSIEARSENLGDAT 123 Query: 145 -----------------LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 T + G+ LD ++ F TF+EG SN +AL AA+ +A Sbjct: 124 HVTRAQAATAAVGRGDSASDSTRDVLQGAALDPKYTFETFVEGDSNNLALAAARQVA--- 180 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 V NPL++HASVGLGKTHL+QA+A S R +V+YLTAE+FM++F +A++ Sbjct: 181 --SGGAVTFNPLYLHASVGLGKTHLMQAVA--SKVRNSGRKVLYLTAEHFMYKFVAALKS 236 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 AL KD+LR IDLLLIDDMQFL GK +Q EFCH LN+L+D A+QV+ AADRPPS+L++ Sbjct: 237 QSALAFKDNLRTIDLLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRPPSDLDT 296 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 LD R+RSRL GG+ V + D+ +R SIL +R+ + K P+ ++ + VL ++AR V +S Sbjct: 297 LDDRVRSRLSGGLVVGIQEPDFVLRRSILVSRVEAAHKSYPQFDVPDSVLDYIARHVASS 356 Query: 368 GRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 GR+L+GA N+L+ + +T E+A+ L LV + E ++++IEDIQR+V+KHYN+++ Sbjct: 357 GRDLEGALNRLIAHNQLTNQPITQEMAEMTLRDLVRSSEPRRVKIEDIQRVVSKHYNVTK 416 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 DLLS RR RT+VRPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRK+E+M D Sbjct: 417 ADLLSARRTRTIVRPRQIAMYLAKVMTPRSLPEIGRRFGNRDHTTVLHAVRKIEEMARAD 476 Query: 487 ITLKKEVELLKRLIS 501 L +E+ELLKR++ Sbjct: 477 YALAQEIELLKRMLD 491 >gi|53729134|ref|ZP_00134100.2| COG0593: ATPase involved in DNA replication initiation [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249200|ref|ZP_07531197.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307262581|ref|ZP_07544212.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306858724|gb|EFM90783.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306872079|gb|EFN03792.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 451 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 257/473 (54%), Gaps = 25/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L Sbjct: 1 MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKFL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I L + S+ + + +R P+ + P++ + + S Sbjct: 60 AEIVDLAR-FLSKNNDLAVSIRVGIKPA-----------EHRPVSPSTTSSNSKEEVPET 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + F + L+ F F++G SN++A AQ +A+ + NP ++ GLGKT Sbjct: 108 NKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF Sbjct: 164 HLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 224 FANKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPEL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F + Sbjct: 284 ETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQI 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L Sbjct: 339 TIDAVREALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMAL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 398 AKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 450 >gi|330806658|ref|YP_004351120.1| Chromosomal replication initiator protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374766|gb|AEA66116.1| Chromosomal replication initiator protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 508 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 156/516 (30%), Positives = 255/516 (49%), Gaps = 63/516 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRVMEL 62 Query: 97 FQEEHSRI--------------------------------------------QGVEILVR 112 E + + Sbjct: 63 LDEHGNGMAPALSLLIGSKRSSAPRAAPNAPLAAAASQAQQAATAPVNNHAAPAPAPAPS 122 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTF 167 V + + PS P+ S+ + +Q V G S L+ F F F Sbjct: 123 KRNAQKVAEVSEEPSRDSFDPMAGASSQQAPVRAEQRTVQVEGALKHTSYLNRTFTFENF 182 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 +EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN Sbjct: 183 VEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNA 237 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF H N+ Sbjct: 238 KVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNA 297 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + + Sbjct: 298 LLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKAD 352 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGE 405 K+ + + +A+ + ++ REL+GA +++ F +T E+ E L L+ Sbjct: 353 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ- 411 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG Sbjct: 412 DKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFG 471 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 GRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 507 >gi|217966450|ref|YP_002351956.1| chromosomal replication initiator protein DnaA [Dictyoglomus turgidum DSM 6724] gi|217335549|gb|ACK41342.1| chromosomal replication initiator protein DnaA [Dictyoglomus turgidum DSM 6724] Length = 443 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 145/469 (30%), Positives = 253/469 (53%), Gaps = 37/469 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + +SI+ S L ++ + +W + LK ++ + + L P F K W++ YL I Sbjct: 3 DIKSIWEEALSYLSLEISRPGFETWIKTLKPLTLEGSKIVLQTPNKFSKDWLEEYYLPLI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ ++ + VEIL + EK + P K+ ++T+ + Sbjct: 63 EEVIRKVTQKDFKVEIL-------AEEKEENIPEDKKVEYLSTSYN-------------- 101 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G SNR A AA ++++ Y NPL I+ VGLGKTHL+ Sbjct: 102 ---NLNPKYTFDTFVVGDSNRFAHAAALAVSQNPGKAY-----NPLLIYGGVGLGKTHLI 153 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI ++ ++ P RVVY + E F AI+++ ++ RNID+LLIDD+QFL G Sbjct: 154 HAIGHSIQEKYPKARVVYASMEKFTVELIDAIKEDGMTKFRNRYRNIDVLLIDDIQFLAG 213 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + N+L ++ KQ+V +DR P E+ +L+ R+RSR + G+ + D E R Sbjct: 214 KERTQEEFFYTFNALYEAGKQIVLTSDRVPKEIPTLEDRLRSRFEWGLIADIQPPDLETR 273 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +ILK + + + +EV+ +A + ++ REL+GA + + S + + E Sbjct: 274 IAILKKKAEAEKA-----KVPDEVIEFIASQIQSNIRELEGALIRTIAFASLNNMPINLE 328 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A +L ++ K + I++I + VA+++NI+ L R + + PRQ+AMYL++ Sbjct: 329 LAKTVLKDIIQPQI-KNITIQNILQAVAEYFNITVEQLKGKGRSQEIAVPRQIAMYLART 387 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG G RDHTTVLHA K++++ +TD+++KK ++ ++ + Sbjct: 388 LTDLSLPKIGEELGGRDHTTVLHAYEKIQELYQTDLSIKKAIQDIQNRL 436 >gi|255264264|ref|ZP_05343606.1| chromosomal replication initiator protein DnaA [Thalassiobium sp. R2A62] gi|255106599|gb|EET49273.1| chromosomal replication initiator protein DnaA [Thalassiobium sp. R2A62] Length = 447 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 175/468 (37%), Positives = 274/468 (58%), Gaps = 26/468 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + V L++Q+G + +++W + L F V + VPTNF+ ++ Y E I Sbjct: 2 TDETWGTVLETLRDQLGANTFSNWIEPLSFSDVTDGVATFHVPTNFMGNYVAQNYSEQIV 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L + + + V + S P+ T P NT V Sbjct: 62 YLMNRSGADVSRAKFAVAQKSAC----PTSKPTTTGQPPANTAA--------------VP 103 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+PLD+RF F F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 104 GAPLDARFTFDRFVVGKPNELAFAAAKRVAEG-----GPVTFNPLFLYGGVGLGKTHLMH 158 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA+ R+ +L V+YL+AE FM+RF +A+R+N ++ K R++D+L++DD+QF+ GK Sbjct: 159 AIAHELTARRSDLNVLYLSAEQFMYRFVTALRENSMMDFKHMFRSVDILMVDDVQFIAGK 218 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ++ +ADR P E++ L+ RI+SRLQ G+ V L DYE+R Sbjct: 219 GSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEERIKSRLQSGLVVDLHPTDYELRL 278 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL++++ +++ L I + VL +A ++T+ R L+GA +L S +T E+ Sbjct: 279 GILQSKVRAYREQYAGLVIADGVLEFLAHRISTNVRVLEGALTRLYAFASLVGKEITLEL 338 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + LS ++ +K+ +E+IQR V++HYNI +D++ +RVR RPRQ+AM+L K M Sbjct: 339 AQDCLSDILRAS-DRKITVEEIQRKVSEHYNIRLSDMIGPKRVRAYARPRQIAMWLCKQM 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGRRFG RDHTTV+H V++VE++ D + ++E+L+R + Sbjct: 398 TSRSLPEIGRRFGGRDHTTVMHGVKRVEELKTIDSQISDDLEMLRRAL 445 >gi|307253756|ref|ZP_07535610.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258213|ref|ZP_07539956.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260451|ref|ZP_07542146.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306863240|gb|EFM95180.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867673|gb|EFM99518.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869854|gb|EFN01636.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 451 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 153/473 (32%), Positives = 257/473 (54%), Gaps = 25/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L Sbjct: 1 MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKFL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I L + S+ + + +R P+ + P++ + + S Sbjct: 60 AEIVDLAR-FLSKNDNLAVSIRVGIKPA-----------EHRPVSPSTTSSNSKEEVPET 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + F + L+ F F++G SN++A AQ +A+ + NP ++ GLGKT Sbjct: 108 NKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF Sbjct: 164 HLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 224 FANKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPEL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F + Sbjct: 284 ETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQI 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L Sbjct: 339 TIDAVREALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 398 AKELTNHSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 450 >gi|323463201|gb|ADX75354.1| chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius ED99] Length = 447 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 256/470 (54%), Gaps = 27/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V S K V Y +W + +++ + + F+ W+ Y + Sbjct: 1 MSEQEIWDNVLSLCKENVTTVSYDTWLKDTTLYALSRDEAIVIAAQPFIANWLTTNYTKL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + + L + +SS + +P+ +S Sbjct: 61 IKQYLEAVTQQTINTIKFITEEDLQELNVASSSHQLGHSTPVEPVVS------------- 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G ++ F TF+ G NR A+ ++AE ++ Y NPLFI+ VGLGKTHL Sbjct: 108 --GEQFNTNNTFETFVIGPGNRFPHAASLAVAESPANAY-----NPLFIYGGVGLGKTHL 160 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + ++ P+ +V+Y ++E F F +IR+N + ++ RNID+LLIDD+QF+Q Sbjct: 161 MHAIGHYVLENNPDAKVLYTSSEKFTNEFIQSIRNNDTESFREKYRNIDILLIDDIQFIQ 220 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ +L+ R++SR Q G+ V + D+E Sbjct: 221 KKEQTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTLEERLKSRFQWGLIVDITPPDFET 280 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + T+ REL+GA +++ +T Sbjct: 281 RMAILQK-----KTEEENLDIPIESLTYIANQIQTNIRELEGALTRVLAYSKLQGKPITT 335 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ + L ++ +TKK+ I+DIQ++V ++Y + D ++ +R +++ PRQ+AMYLS+ Sbjct: 336 ELTADALKDIIQVTKTKKITIQDIQKVVGEYYGVRIEDFVAKKRTKSIAYPRQIAMYLSR 395 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K++K +E D TL++E+E L++ I Sbjct: 396 ELTDFSLPKIGEEFGGRDHTTVIHAHDKIKKDIENDPTLRQEIESLEKDI 445 >gi|56477034|ref|YP_158623.1| chromosomal replication initiation protein [Aromatoleum aromaticum EbN1] gi|71151792|sp|Q5P4P0|DNAA_AROAE RecName: Full=Chromosomal replication initiator protein DnaA gi|56313077|emb|CAI07722.1| Chromosomal replication iniciator protein DnaA [Aromatoleum aromaticum EbN1] Length = 481 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 148/489 (30%), Positives = 249/489 (50%), Gaps = 34/489 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVH---LSVPTNFLKAWIKNRYLE 91 + +++ SRL++++ P + +W + L+ L P+ F+ W++ RYL Sbjct: 2 SQDLWSFCLSRLEHELPPQQFNTWIKTLQADEEKAGASVALRLVAPSRFVLQWVRERYLR 61 Query: 92 TITKLFQEEHSRIQGVEILVRS-----------VALPSVEKTASSPSITKLSPINTNISK 140 I +L E H +E+++ + + V A +P+ ++ Sbjct: 62 RIGELGAEFHGAPIEIELVLPAAGAARPAARPVIGSGPVAGPAPAPTPSQAPAATAAAPA 121 Query: 141 SPIILGKQTISPVFGS-------PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + S V S L++ F F T + G +N +A AA +A+ Y Sbjct: 122 VVTRPAEPESSIVTASDLAYEKTRLNADFTFDTLVTGRANDLARAAAMQVAQNPGTSY-- 179 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPLF++ VGLGKTHL+ AI NA + P + Y+ E + A + Sbjct: 180 ---NPLFVYGGVGLGKTHLVHAIGNAVYRHNPRAVIRYVHVEDYYADVVRAYQQKSFDAF 236 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 K R++DLLLIDD+QF K Q EF H N+L ++ KQ+V D P +++ L+ R+ Sbjct: 237 KRYYRSLDLLLIDDIQFFNNKNRTQEEFFHAFNALTEARKQIVITCDTYPKDIQGLEDRL 296 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 SR G++V + + EMR +IL+ + E +++++++V +A+ + ++ REL+ Sbjct: 297 ISRFDWGLTVQIEPPELEMRVAILQK-----KAEALRVDLHDDVAFLIAKNLRSNVRELE 351 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA N++V F +T E+A + L L+N +++ IE IQ+ VA +Y I D+ S Sbjct: 352 GALNKVVAFARFHGRGITLEVAKDALKDLLN-AHNRQLTIEHIQKTVADYYKIKVADMHS 410 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 +R R + RPRQVAM+L+K +TP S P IG FG RDHTTV+HA R + ++ D L Sbjct: 411 KKRTRVIARPRQVAMWLAKDLTPMSLPAIGEAFGGRDHTTVMHACRTIAELRLGDHQLNH 470 Query: 492 EVELLKRLI 500 +V +L +++ Sbjct: 471 DVHVLTQVL 479 >gi|319893740|ref|YP_004150615.1| Chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius HKU10-03] gi|317163436|gb|ADV06979.1| Chromosomal replication initiator protein DnaA [Staphylococcus pseudintermedius HKU10-03] Length = 447 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 255/470 (54%), Gaps = 27/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V S K V Y +W + +++ + + F+ W+ Y + Sbjct: 1 MSEQEIWDNVLSLCKENVTTVSYDTWLKDTTLYALSRDEAIVIAAQPFIANWLTTNYTKL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + + L + +SS +P+ +S Sbjct: 61 IKQYLEAVTQQTINTIKFITEEDLQELNVASSSHQSGHSTPVEPVVS------------- 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G ++ F TF+ G NR A+ ++AE ++ Y NPLFI+ VGLGKTHL Sbjct: 108 --GEQFNTNNTFETFVIGPGNRFPHAASLAVAESPANAY-----NPLFIYGGVGLGKTHL 160 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + ++ P+ +V+Y ++E F F +IR+N + ++ RNID+LLIDD+QF+Q Sbjct: 161 MHAIGHYVLENNPDAKVLYTSSEKFTNEFIQSIRNNDTESFREKYRNIDILLIDDIQFIQ 220 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ +L+ R++SR Q G+ V + D+E Sbjct: 221 KKEQTQEEFFHTFNDLHQNKKQIVISSDRPPKEISTLEERLKSRFQWGLIVDITPPDFET 280 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + T+ REL+GA +++ +T Sbjct: 281 RMAILQK-----KTEEENLDIPIESLTYIANQIQTNIRELEGALTRVLAYSKLQGKPITT 335 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ + L ++ +TKK+ I+DIQ++V ++Y + D ++ +R +++ PRQ+AMYLS+ Sbjct: 336 ELTADALKDIIQVTKTKKITIQDIQKVVGEYYGVRIEDFVAKKRTKSIAYPRQIAMYLSR 395 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K++K +E D TL++E+E L++ I Sbjct: 396 ELTDFSLPKIGEEFGGRDHTTVIHAHDKIKKDIENDPTLRQEIESLEKDI 445 >gi|307244802|ref|ZP_07526901.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307251522|ref|ZP_07533429.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854247|gb|EFM86453.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306860986|gb|EFM92992.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 451 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 153/473 (32%), Positives = 257/473 (54%), Gaps = 25/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L Sbjct: 1 MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKFL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I L + S+ + + +R P+ + P++ + + S Sbjct: 60 AEIVDLAR-FLSKNNDLAVSIRVGIKPA-----------EHRPVSPSTTSSNSKEEVPET 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + F + L+ F F++G SN++A AQ +A+ + NP ++ GLGKT Sbjct: 108 NKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF Sbjct: 164 HLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 224 FANKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPEL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F + Sbjct: 284 ETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQI 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L Sbjct: 339 TIDAVREALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 398 AKELTNHSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 450 >gi|158336233|ref|YP_001517407.1| chromosomal replication initiation protein [Acaryochloris marina MBIC11017] gi|189044628|sp|B0CDM2|DNAA_ACAM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|158306474|gb|ABW28091.1| chromosomal replication initiator protein DnaA [Acaryochloris marina MBIC11017] Length = 455 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 141/473 (29%), Positives = 240/473 (50%), Gaps = 25/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + E++++ V RL+ Q+ + +W + + N + + P F + W++ Y+ Sbjct: 1 METSLETLWSQVLERLQLQLSRPTFETWIKTANAEQLDENRLVIRTPNPFARNWLQKYYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +TI + E ++I + A T S+P + P + + + +Q Sbjct: 61 KTIRDVVHEILGHPVEIQIEI---AQGDSNATISAPEVASPPPTASPVENTNTSQRQQAS 117 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++VFS ++ G +NR+A A ++AE NPLF+ VGLGKT Sbjct: 118 -------LNPKYVFSRYVVGPNNRMAHAACLAVAESPGR-----EFNPLFLCGGVGLGKT 165 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ PN R+ Y++ E F +AIR + ++ R +D++L+DD+QF Sbjct: 166 HLMQAIGHYRLEISPNSRIFYISTEQFTNDLIAAIRKDGMQKFREHYRAVDVMLVDDIQF 225 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPPS++ L R+ SR G+ + D Sbjct: 226 IEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIADIQPPDL 285 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + + EV+ ++A + T++ REL+GA + V + I Sbjct: 286 ETRMAILQK-----KAEYENIRLPREVIEYIASSYTSNIRELEGALIRAVA---YISISG 337 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++N K E I VA Y IS +DL N R R + RQ+ MYL Sbjct: 338 LPMNVENIAPVLNPPTAKISASPESIINAVADTYGISIDDLKGNSRRREISMARQIGMYL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P+IG FG +DHTTV+++ KV + + + L + + L I Sbjct: 398 MRQHTDLSLPKIGEEFGGKDHTTVMYSCDKVSDLQKKNPELAQSLRQLGDRIK 450 >gi|53802863|ref|YP_115420.1| chromosomal replication initiator protein DnaA [Methylococcus capsulatus str. Bath] gi|61212517|sp|Q602N0|DNAA_METCA RecName: Full=Chromosomal replication initiator protein DnaA gi|53756624|gb|AAU90915.1| chromosomal replication initiator protein DnaA [Methylococcus capsulatus str. Bath] Length = 442 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 153/467 (32%), Positives = 255/467 (54%), Gaps = 32/467 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 +++ S+L+ ++ P + +W + L+ + L P F+ W+K ++ I ++ Sbjct: 4 LWSHCISKLEGELPPQQFNTWIRPLQAVE-DGGELRLLAPNRFVLDWVKQHFIGKIEEVV 62 Query: 98 QEEH-SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E++ V + + S A + + +++P K +P + Sbjct: 63 SEQNRDSAPNVVLEIGSRAAEAAQMRSANPP-RKTAPARKQVPN---------------- 105 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+S F+F F+EG SN++A A+ +A+ Y NPLFI+ VGLGKTHL+ AI Sbjct: 106 NLNSAFIFGNFVEGKSNQLAKAASLQVAQNVGRAY-----NPLFIYGGVGLGKTHLMHAI 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N ++ P +VYL +E F+ A++ N K+ R +D LLIDD+QF GK Sbjct: 161 GNEILRGNPAANIVYLHSERFVSDMVKALQHNAINAFKEFYRTVDALLIDDIQFFAGKER 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+LL++ QVV DR P E++ L+ R++SR G+ V + D E R +I Sbjct: 221 SQEEFFHTFNTLLENKHQVVLTCDRYPKEIKGLEERLKSRFGWGLPVAIEPPDLETRVAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L +S+ + ++++ EV + + + ++ REL+GA +++ F +T E A Sbjct: 281 L-----MSKAQQSGIDLSPEVAFFIGKRIRSNIRELEGALRRVIANAQFTGRPITLEFAK 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + +E+IQ+ V++++ I + DLLSN+R R++ RPRQ+AM LSK +T Sbjct: 336 EALRDLIALQ-DRMINVENIQKTVSEYFKIRQADLLSNKRTRSLTRPRQIAMALSKELTS 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG+ FG RDHTTVLHA RKV+++ E+D ++ L R++S Sbjct: 395 HSLPEIGQMFGGRDHTTVLHACRKVQELKESDARFMEDFSNLLRILS 441 >gi|148259022|ref|YP_001233149.1| chromosomal replication initiation protein [Acidiphilium cryptum JF-5] gi|146400703|gb|ABQ29230.1| chromosomal replication initiator protein DnaA [Acidiphilium cryptum JF-5] Length = 482 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 170/475 (35%), Positives = 281/475 (59%), Gaps = 20/475 (4%) Query: 32 EVNCESI---FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 E++ + + ++ V RL+ ++G Y +W ++ H + + V + +PT FL+ W+ Sbjct: 22 EISQDELAHQWSRVRGRLQEEIGEVEYRNWLRQAVLHGLDGDEVTVMLPTRFLRDWVNKE 81 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y +T +Q E+ ++ V+I R + +P + ++ P + + Sbjct: 82 YGNLLTAFWQAENPAVRRVDIRTRPAGT-----SERAPDLAEVEPKTAIARPAAAARREA 136 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P +PLD RF F TF+ G N A A+ +A+ G+ + NPLF++ VGLG Sbjct: 137 EERPDMSAPLDPRFTFDTFVVGKPNEFAYACARRVAD----GHASPGFNPLFLYGGVGLG 192 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AIA +R + V Y++AE FM +F SA+R + K+ LR++D+L++DD+ Sbjct: 193 KTHLMHAIAWELSQRSDEVTVAYMSAEKFMHKFVSALRRQSTIEFKNELRSVDVLMVDDL 252 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L+DS KQ++ +AD+ PS+L ++ R+R+RL G+ + Sbjct: 253 QFLIGKDGTQEEFFHTFNALVDSGKQIIVSADKSPSDLSGIEDRLRTRLGCGMVADVHAT 312 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 YE+R +IL+ ++ + + V+ +A+ +T + REL+GA N+L+ + F Sbjct: 313 TYELRLAILE-----AKAARAGVVVPGRVMEFLAQKITANVRELEGALNRLIAHANLFER 367 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E A E+L L+ +K+ IE+IQ+ VA+HYNI +++ S RR R + RPRQ+AM Sbjct: 368 PVTLETAHEVLHDLLR-AYDRKITIEEIQKQVAEHYNIRVSEMSSARRARNIARPRQIAM 426 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL+K +T RS PEIGR+FG+RDHTTV+HAV KV +++E D ++VELL+R+++ Sbjct: 427 YLAKQLTSRSLPEIGRKFGNRDHTTVMHAVSKVTELIEADPDFAEDVELLRRILT 481 >gi|126734082|ref|ZP_01749829.1| chromosomal replication initiation protein [Roseobacter sp. CCS2] gi|126716948|gb|EBA13812.1| chromosomal replication initiation protein [Roseobacter sp. CCS2] Length = 445 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 275/470 (58%), Gaps = 28/470 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 I+ V + LK +G + Y+SW + L+F + + VPTNF+ ++ + + I Sbjct: 2 TNDIWAKVLNTLKGALGANSYSSWIEPLEFTQLSDGVAIFDVPTNFIGNYVSQNFGDQII 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + +Q ++ V S P+ + + +I Sbjct: 62 YHMNKAGEDVQRLQFRVPSQTRPATKAKSVKKTIEA--------------------ENGS 101 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+PLD+RF F TF+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 102 GAPLDNRFTFDTFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMH 156 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA+ +R P L V+YL+AE FM+RF +A+R+ ++ K R++D+L++DD+QF+ GK Sbjct: 157 AIAHELKERSPELNVLYLSAEQFMYRFITALRERKMMDFKQLFRSVDVLMVDDVQFIGGK 216 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ++ +ADR P E++ L+ RI+SRLQ G+ V L DYE+R Sbjct: 217 DSTQEEFFHTFNALVDGQKQIIISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRL 276 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL++++ + + P+L I + VL +A ++T+ R L+GA +L S +T E+ Sbjct: 277 GILQSKVDVYSAQYPELVIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREITLEL 336 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + LS ++ +K+ +E+IQR V++HYNI +D++ +RVR RPRQ+AMYL+K M Sbjct: 337 TQDCLSDVLKAS-DRKVTVEEIQRKVSEHYNIRLSDMIGPKRVRNYARPRQIAMYLAKQM 395 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T RS PEIGRRFG RDHTTV+H V+++E++ D + ++ELL+R + E Sbjct: 396 TSRSLPEIGRRFGGRDHTTVMHGVKRIEELKALDSQIADDLELLRRALQE 445 >gi|307256022|ref|ZP_07537810.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865444|gb|EFM97339.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 451 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 154/473 (32%), Positives = 257/473 (54%), Gaps = 25/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L Sbjct: 1 MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKFL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I L + S+ + + +R P+ K+ S + + S S Sbjct: 60 AEIVDLAR-FLSKNDNLAVSIRVGIKPAEHKSVSPSTTSNNSKEEAQES----------- 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + F + L+ F F++G SN++A AQ +A+ + NP ++ GLGKT Sbjct: 108 NKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF Sbjct: 164 HLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 224 FANKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPEL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F + Sbjct: 284 ETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQI 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L Sbjct: 339 TIDAVREALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMAL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 398 AKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 450 >gi|192288434|ref|YP_001989039.1| chromosomal replication initiation protein [Rhodopseudomonas palustris TIE-1] gi|226735837|sp|B3QJZ9|DNAA_RHOPT RecName: Full=Chromosomal replication initiator protein DnaA gi|192282183|gb|ACE98563.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris TIE-1] Length = 472 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 213/478 (44%), Positives = 304/478 (63%), Gaps = 12/478 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++ V RL++ VG DVY+SWF R+ SV VHLSVPT FLK+WI+ Y Sbjct: 1 MSNMEQDRWSRVKGRLRSSVGEDVYSSWFARMDLESVHDESVHLSVPTRFLKSWIQTHYS 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +Q E + V++ VRS + + + ++ + Sbjct: 61 DKVLSCWQAELPEVNRVDLTVRSPVRCAAPAKEAPAPVESRRDEQRPSAERSNGATPVSA 120 Query: 151 SPVF--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + GSPLD R F++F+ G SN +A AA+ +AE V NPL+IH+ VGLG Sbjct: 121 NHDALGGSPLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGLG 178 Query: 209 KTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 KTHLLQA+ NA +R +V+YLTAE FM+ F +A++ +L K++LR ID+L+I Sbjct: 179 KTHLLQAVTWAGNAGTER----KVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVI 234 Query: 266 DDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 DD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPP++LESLD R+RSRL GG+ V + Sbjct: 235 DDLQFLQGKTTQAEFCHTLNALIDAGRQVVVAADRPPADLESLDERVRSRLAGGLVVEMA 294 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 ++R IL++R+ ++ ++ + VL ++ART+T +GR+L+GA N+L+ Sbjct: 295 PLGEDLRLGILRSRVVAARTHHASFDVPQPVLEYLARTITHNGRDLEGAINRLLAHSKLN 354 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T E+A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQV Sbjct: 355 NQPVTLEMAEHEVRDLIRPSEPKRIKIEDIQRIVARQYNVSRSDLLSSRRTANVVRPRQV 414 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVE LKR + E Sbjct: 415 AMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDTTLSDEVESLKRQLQE 472 >gi|254478926|ref|ZP_05092288.1| chromosomal replication initiator protein DnaA [Carboxydibrachium pacificum DSM 12653] gi|214035148|gb|EEB75860.1| chromosomal replication initiator protein DnaA [Carboxydibrachium pacificum DSM 12653] Length = 462 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 251/475 (52%), Gaps = 34/475 (7%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 + + I+ + +K+++ P Y +W +K + + + LS P F K I R Sbjct: 18 HTMYGDYRQIWERIVEVIKSELTPTSYNTWLVHIKPLAFAEDTLFLSTPNTFTKNIINGR 77 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y+ I + +R ++IL K + I + Sbjct: 78 YINIIYDAASKVTNRFIEIKILSEDEEEYREIKES--------------------IEREN 117 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLG Sbjct: 118 SSESTLLSTLNPKYTFDTFVVGNSNKLAHAACLAVAQSPAKAY-----NPLFIYGGVGLG 172 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + K +++Y+T+E F ++I+D+ ++ RNID+LLIDD+ Sbjct: 173 KTHLMHAIGHFINKNHAGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDI 232 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ K Q EF H N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 233 QFIANKERTQEEFFHTFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPP 292 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP- 386 DYE R +ILK + + LNI +EVL +VA + ++ REL+GA ++V + Sbjct: 293 DYETRVAILKK-----KAQSENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFATLTKS 347 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + E+ L +V+ T+++ ++ IQ V K+YNI D S +R + + PRQ+AM Sbjct: 348 NIDLELTKHALKDIVSNK-TREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAM 406 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL++ +T S P+IG FG +DHTTV+HA K+ ++ D +L +++E LK+ I Sbjct: 407 YLARELTDLSLPKIGEEFG-KDHTTVIHAYEKISNEIKQDESLARQIEELKKRIK 460 >gi|260429115|ref|ZP_05783092.1| chromosomal replication initiator protein DnaA [Citreicella sp. SE45] gi|260419738|gb|EEX12991.1| chromosomal replication initiator protein DnaA [Citreicella sp. SE45] Length = 556 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 176/484 (36%), Positives = 284/484 (58%), Gaps = 17/484 (3%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL-HNIVHLSVPT 78 + ++ R + + + + +L + +G + Y +W Q ++FH + I +VPT Sbjct: 85 RVEHMARSFRSGDRMTKEQWGALQDQLSSTIGENNYKTWIQPIEFHGIEPGGIAVFNVPT 144 Query: 79 NFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNI 138 NF+ ++ + E + S I+ ++ V +V ++ +P+ + T Sbjct: 145 NFIGTYVSQNFGELLLAKLASMDSEIRRLKFQVANVDTRPSQQPRPAPTAGSAASTQTAT 204 Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + S +L G+PLD+RF F +FI G N +A AA+ +AE V NP Sbjct: 205 ATSGDVLP--------GAPLDARFTFDSFIVGKPNELAHAAAKRVAEG-----GQVTFNP 251 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LF++ VGLGKTHL+ AIA +P+L V+YL+AE FM+RF A+R+ ++ K+ R Sbjct: 252 LFLYGGVGLGKTHLMHAIAWDLRNHRPDLNVLYLSAEQFMYRFVQALRERRMMDFKELFR 311 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ++D+L++DD+QF+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ RIRSRLQ Sbjct: 312 SVDVLMVDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQ 371 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ V L DYE+R IL++++ + + P L +++ +L +A ++T+ R L+GA + Sbjct: 372 SGLVVDLHPTDYELRLGILQSKVQNYRLQYPSLQLDDGILEFLAHRISTNVRVLEGALTR 431 Query: 378 LVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L S +T E+ + L+ ++ +K+ IE+IQR VA+HYNI +DL+ +RVR Sbjct: 432 LFAFASLVGQPITMELTQDCLADVLRAS-DRKISIEEIQRKVAEHYNIRLSDLIGPKRVR 490 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 RPRQVAMYL K +T RS PEIGRRFG RDHTTV+H V+++E++ D + +VELL Sbjct: 491 NFARPRQVAMYLCKQLTARSLPEIGRRFGGRDHTTVMHGVKRIEELRTQDSQIADDVELL 550 Query: 497 KRLI 500 +R + Sbjct: 551 RRAL 554 >gi|113460282|ref|YP_718341.1| chromosomal replication initiation protein [Haemophilus somnus 129PT] gi|123031085|sp|Q0I0Y7|DNAA_HAES1 RecName: Full=Chromosomal replication initiator protein DnaA gi|112822325|gb|ABI24414.1| chromosomal replication initiator protein DnaA [Haemophilus somnus 129PT] Length = 452 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 160/473 (33%), Positives = 257/473 (54%), Gaps = 24/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +++ +L++QV + + +W + L+ V + + L P F+K W++N YL Sbjct: 1 MSSTVSTLWRDCLLQLQDQVSSNDFTTWLRPLQ-DDVSESNMILYAPNCFIKGWVENHYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ITKL Q+ + Q + ++ P+ + T + T+ + I+ Sbjct: 60 TQITKLAQQLLNNDQ-FMVKIQDGIKPTEKTTTNVEQKTQNENCHNEITSQQ-------- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ VF F+EG SN++A AQ +A+ NPLF++ GLGKT Sbjct: 111 --NYRSYLNKNHVFDNFVEGKSNQLARAVAQKVAKNPGE----QSANPLFLYGGTGLGKT 164 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N + P+ +VVY+ AE FM + A++ + + K R +D LLIDD+QF Sbjct: 165 HLLHAVGNGILANNPHAQVVYMHAERFMQSYVKALKSDRMDSFKRFYRTVDALLIDDIQF 224 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF H+ NSL + +Q++ +DR P E+E ++ R++SR G+SV + + Sbjct: 225 FAGKDGTQEEFFHIFNSLFERGRQIILTSDRYPKEIEKIEDRLKSRFGWGISVAIEPPEL 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + E+ + + EEV M + + T+ REL+GA N++ F + Sbjct: 285 ETRVAIL-----LKKAEEKNMVLPEEVAMFIGGKLRTNVRELEGALNRVHAHAEFTGKAI 339 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L ++ K + IE+IQ++VA +Y I +DL S RR R + RPRQ+AM L Sbjct: 340 TIDFVRETLKDMLALQ-DKLVTIENIQKIVADYYRIKISDLKSKRRSRNITRPRQLAMAL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T RS PEIGR FGDRDHTTVLHA + + K+ E D ++++ L R +S Sbjct: 399 AKELTNRSLPEIGRNFGDRDHTTVLHACKAIAKLREEDNGIQEDWSNLIRTLS 451 >gi|319405028|emb|CBI78638.1| chromosomal replication initiator protein DnaA [Bartonella sp. AR 15-3] Length = 521 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 277/476 (58%), Positives = 353/476 (74%), Gaps = 8/476 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK +G + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 46 EEEGAAAFARVMAQLKANIGVEAYTSWFGRLKLAEYNRNLVKLSVPTAFLRSWINNHYSA 105 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS-----ITKLSPINTNISKSPIILG 146 +T L+Q+E+S I VE++VRS+ S + S + + + + Sbjct: 106 LLTTLWQQENSAILRVEVIVRSMERVSKDPVCRSNKSSVVIVPEEQSFSPLVDSYAEQSM 165 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K T + VFGSPLDSR+ F F+EG+SNRVAL AA+SIAE +++R NPLFI+ASVG Sbjct: 166 KNTQAGVFGSPLDSRYTFENFVEGASNRVALAAARSIAEGHK---SSLRFNPLFIYASVG 222 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLLQAIA ++KR + RV+YLTAEYFMWRFA AIRDN AL+ K+ LR+IDLL+ID Sbjct: 223 LGKTHLLQAIAAGALKRLTSARVIYLTAEYFMWRFAMAIRDNDALSFKEQLRDIDLLIID 282 Query: 267 DMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 DMQFLQGK IQ EFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RSRLQGGV++ + Sbjct: 283 DMQFLQGKSIQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIET 342 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYEMR +L+ RL I+Q++D + I++E+L ++A+TV SGR+++GAFNQL+FR SF Sbjct: 343 PDYEMRLEMLRQRLKIAQQDDNMVMISDEILAYIAKTVLGSGRDIEGAFNQLLFRQSFEI 402 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 L+ E DELLSHL +GE+K++RIE+IQR VA+HYN+SR DLLSNRR RT+V+PRQVAM Sbjct: 403 DLSLERIDELLSHLTRSGESKRIRIEEIQRTVARHYNVSRQDLLSNRRTRTIVKPRQVAM 462 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 463 YLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 518 >gi|157144344|ref|YP_001451663.1| hypothetical protein CKO_00048 [Citrobacter koseri ATCC BAA-895] gi|157081549|gb|ABV11227.1| hypothetical protein CKO_00048 [Citrobacter koseri ATCC BAA-895] Length = 444 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 146/455 (32%), Positives = 241/455 (52%), Gaps = 22/455 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL---FQEEHSRIQGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L F + E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLNNFCGADAPQLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFI 168 V + + +++ + P + S ++ + F F+ Sbjct: 60 VTQTLKTPVNNVVAPAQVAQAQPQRAVPAAARPGWDNVPAPAEPTYRSNVNVKHTFDNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN + Sbjct: 120 EGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 VVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N+L Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNAL 234 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 L+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + ++ Sbjct: 235 LEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKADE 289 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 NDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ-E 348 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG Sbjct: 349 KLVTIDNIQKTVAEYYKIKIADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGG 408 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 409 RDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 443 >gi|84501260|ref|ZP_00999465.1| chromosomal replication initiation protein [Oceanicola batsensis HTCC2597] gi|84390551|gb|EAQ03039.1| chromosomal replication initiation protein [Oceanicola batsensis HTCC2597] Length = 470 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 172/469 (36%), Positives = 267/469 (56%), Gaps = 13/469 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V +L VG Y +W + L + + P ++ ++ + + I Sbjct: 6 WGAVKQKLLQNVGQHNYKNWIEPLVLDRTEDGVAVIGAPNSWAGTYVARNFGDLILGEVS 65 Query: 99 EEHSRIQGVEILVR---SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF- 154 + ++ +E +VR +V P + A +P S++P K + Sbjct: 66 MMNRDVRRLEFVVRKAANVNAPEPARPAQMEVEPAEAPAPAAASQTPAQPAKASPMDTML 125 Query: 155 -GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 +PLD RF F F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 126 QAAPLDPRFTFDRFVVGKPNELAHAAARRVAEA-----GPVTFNPLFLYGGVGLGKTHLM 180 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AIA +P+L VVYL+AE FM+RF AIR+ ++ K R +D+L++DD+QF+ G Sbjct: 181 HAIAWELQTHRPDLTVVYLSAEQFMYRFVQAIRERRTMDFKSLFRTVDVLMVDDVQFIAG 240 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D KQ++ + DR P E+ ++ RIRSR+Q G+ V L DYE+R Sbjct: 241 KDSTQEEFFHTFNALVDQNKQIIISGDRAPGEMTDMEERIRSRMQCGLIVDLHPTDYELR 300 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 IL++++ + + P L + + VL +A ++T+ R L+GA +L S +T + Sbjct: 301 LGILQSKVDAQRAQYPDLKLADGVLEFLAHRISTNVRVLEGALTRLFAFSSLVGREITLD 360 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E LS ++ +K+ +E+IQR VA+HYNI +DL+ +RVRT RPRQVAMYLSK Sbjct: 361 LTQECLSDILRAS-ERKITVEEIQRKVAEHYNIRMSDLIGPKRVRTYARPRQVAMYLSKS 419 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T RS PEIGRRFG RDHTTV+H VR++E++ + D + +++ELL+R + Sbjct: 420 LTSRSLPEIGRRFGGRDHTTVIHGVRRIEELKQQDGQIAEDIELLRRAL 468 >gi|224827186|ref|ZP_03700281.1| chromosomal replication initiator protein DnaA [Lutiella nitroferrum 2002] gi|224600579|gb|EEG06767.1| chromosomal replication initiator protein DnaA [Lutiella nitroferrum 2002] Length = 466 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 239/475 (50%), Gaps = 19/475 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + +RL+ ++ + +W + L + + V L P F+ +IK+R+L Sbjct: 2 TELDQFWPACLARLEGELSSQQFNTWIKPL-AAELTEDGVQLLAPNRFIMQFIKDRFLGR 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I +L E + VE+ + S A + + S + + KQ Sbjct: 61 IEELAVELMGEVP-VELRLGSPNAAPAVVPAKPAAPSGKSAPAGGAAPAVATPAKQAAVK 119 Query: 153 VFG-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 G + L+ F F T + G N++A AA IAE NPLF++ VGL Sbjct: 120 AIGGGHESTRLNPAFTFDTLVTGKGNQLARAAAMQIAENPG----DQAYNPLFVYGGVGL 175 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI N ++ P ++ Y+ AE ++ A + K ++DLLLIDD Sbjct: 176 GKTHLIQAIGNHVYQKNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDD 235 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK EF + N+LL+S KQV+ D P ++E +D R+ SR G++V + Sbjct: 236 IQFFAGKNRTMEEFFYAFNALLESGKQVIMTCDTYPKQIEGMDERLISRFSWGLTVEIQP 295 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + EMR +IL + + E + ++ V +A+ V ++ REL+GA ++V F Sbjct: 296 PELEMRVAIL-----MKKAEADSIKLDHTVAFFIAQNVRSNVRELEGALKRVVAYARFTN 350 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++ E+ E L ++ G +++ ++ IQ+ VA++Y I D+ S +R R + RPRQ+A Sbjct: 351 QSISLELVKEALKDILAAG-NRQVTVDAIQKTVAEYYKIKLGDMHSKKRSRDIARPRQIA 409 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M L+K +T S P IG FG RDHTTVLHA + + +M +D + + + L +++ Sbjct: 410 MALAKELTQLSLPNIGDAFGGRDHTTVLHACKTIAEMRGSDADIGHDYDTLLQML 464 >gi|86747128|ref|YP_483624.1| chromosomal replication initiation protein [Rhodopseudomonas palustris HaA2] gi|123004838|sp|Q2J497|DNAA_RHOP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|86570156|gb|ABD04713.1| chromosomal replication initiator protein DnaA [Rhodopseudomonas palustris HaA2] Length = 472 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 216/470 (45%), Positives = 305/470 (64%), Gaps = 12/470 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V RL++ VG DVY+SWF R+ +V VHLSVPT FLK+WI+ Y + + +Q Sbjct: 9 WSRVKGRLRSSVGEDVYSSWFARMDLEAVQPESVHLSVPTRFLKSWIQTHYSDKVLTCWQ 68 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS--PIILGKQTISPVFGS 156 E + +++ VRS +V K A++P + + + + GS Sbjct: 69 AELPEVCRIDLTVRSPMRAAVAKEAAAPVEHRRAEHRPATETRSHATVPASSNHDALGGS 128 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD R F++F+ G SN +A AA+ +AE V NPL+IH+ VGLGKTHLLQA+ Sbjct: 129 PLDPRLTFASFVVGRSNTLAHAAAKQVAE--GRRGDPVMFNPLYIHSGVGLGKTHLLQAV 186 Query: 217 ---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 N I+R +V+YLTAE FM+ F +A++ +L K++LR ID+L+IDD+QFLQG Sbjct: 187 TWAGNTGIER----KVLYLTAEKFMYGFVAALKTQTSLAFKEALRGIDVLVIDDLQFLQG 242 Query: 274 KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 K Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V + ++R Sbjct: 243 KTTQAEFCHTLNALIDAGRQVVVAADRPPSDLESLDERVRSRLAGGLVVEMAPLGEDLRL 302 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 ILK+R+ ++ ++ VL ++AR +T +GR+L+GA N+L+ A +T E+ Sbjct: 303 GILKSRVVAARAHHASFDVPAPVLEYLARAITHNGRDLEGAINRLLAHSKLNAQPVTLEM 362 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ + L+ E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+K + Sbjct: 363 AEHEVRDLIRPQEPKRIKIEDIQRIVARQYNVSRSDLLSSRRTANVVRPRQVAMYLAKTL 422 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EV+ LKR + E Sbjct: 423 TLRSLPEIGRRFGGRDHTTVLHAVRKIEGLVSKDTTLSDEVDSLKRQLQE 472 >gi|47525234|ref|YP_016331.1| chromosomal replication initiation protein [Geobacter sulfurreducens PCA] gi|61212658|sp|Q74GG6|DNAA_GEOSL RecName: Full=Chromosomal replication initiator protein DnaA gi|41152665|gb|AAR99581.1| chromosomal replication initiator protein DnaA [Geobacter sulfurreducens PCA] gi|298504141|gb|ADI82864.1| chromosomal replication initiator protein DnaA [Geobacter sulfurreducens KN400] Length = 445 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 147/465 (31%), Positives = 252/465 (54%), Gaps = 27/465 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ S L + + +W + +K+ N++ L P F++ + YL I + Sbjct: 2 EEVWLQAQSNLAKVLTHQTFNTWIEPIKYLGSKKNVLLLEAPNQFVRDRVSESYLPMILE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 Q +E+L+ A P EK P S+ + P Sbjct: 62 SVQSLTDSQTKIELLI---AKPKTEK-----------PKQPAASEVTAAEPEACSGPDHS 107 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F TF+ G SN+ A AAQS+A + Y NPLFI+ VGLGKTHLL A Sbjct: 108 TNLNPKYTFDTFVCGGSNQFAHAAAQSVANSPAGKY-----NPLFIYGGVGLGKTHLLNA 162 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + R+ + T+E FM + +R ++ R +D+LLIDD+QF+ GK Sbjct: 163 IGNHVLSVNRKARICFYTSEKFMNELINCLRYQKMDQFRNKFRKMDILLIDDIQFIAGKE 222 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H NSL +S KQ+V +D+ P ++ L+ R+RSR + G+ + D E + + Sbjct: 223 RTQEEFFHTFNSLYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQAPDTETKVA 282 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+ + + +++ ++V + +A + TT+ REL+G +L S +T ++A Sbjct: 283 ILRK-----KADADHISLPDDVALFLASSSTTNVRELEGMLIRLGAVSSLTGKNITLDMA 337 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E+L ++ ++K++ +E IQ+ VA+H+++ DL S++R++ +V PRQ+A++L + +T Sbjct: 338 REVLKDII-VDKSKEITVEMIQKFVAEHFSLKVADLKSDKRLKALVIPRQIAIFLCRDLT 396 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 S+PEIG RFG +DH+T++H+V+KVEK+L D L+ V+ L++ Sbjct: 397 KSSYPEIGERFGGKDHSTIIHSVKKVEKLLSQDFELRNTVDTLRK 441 >gi|240849789|ref|YP_002971177.1| chromosomal replication initiator protein DnaA [Bartonella grahamii as4aup] gi|240266912|gb|ACS50500.1| chromosomal replication initiator protein DnaA [Bartonella grahamii as4aup] Length = 523 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 276/474 (58%), Positives = 356/474 (75%), Gaps = 6/474 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF R+K H +V LSVPT FL++WI N Y Sbjct: 50 EEESAAAFIRVMAQLKVQVGVEAYTSWFGRVKLAEYSHTLVKLSVPTAFLRSWINNHYGS 109 Query: 92 TITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +T L+++E+S I VE++VR V+ V K + + + ++ + K Sbjct: 110 LLTHLWKQENSAILRVEVIVRGMERVSRDVVCKRSVPSVVLEEQATSSFVESCAEHSVKN 169 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + + VFGSPLDSR+ F +F+EG+SNRVAL AA+SIAE + +R NPLFIHASVGLG Sbjct: 170 SQTGVFGSPLDSRYTFESFVEGASNRVALAAARSIAEGHK---SALRFNPLFIHASVGLG 226 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQAIA +++KR + RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDM Sbjct: 227 KTHLLQAIAASALKRLTSARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDM 286 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK IQHEFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQGGV++ + D Sbjct: 287 QFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEAPD 346 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YEMR +L+ RL ++Q++D ++I++++L ++A+TV SGR+++GAFNQL+FR SF L Sbjct: 347 YEMRLQMLRQRLKVAQQDDGMVSISDDILEYIAKTVLGSGRDIEGAFNQLLFRQSFESDL 406 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E DELL HL GE K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQVAMYL Sbjct: 407 SLERIDELLGHLTRPGEPKRIRIEEIQRTVARHYNVSKQDLLSNRRTRTVVKPRQVAMYL 466 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 467 AKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCGDQTLAKELELLKRLIGE 520 >gi|89892747|ref|YP_516234.1| ATPase involved in DNA replication initiation [Desulfitobacterium hafniense Y51] gi|219666072|ref|YP_002456507.1| chromosomal replication initiator protein DnaA [Desulfitobacterium hafniense DCB-2] gi|89332195|dbj|BAE81790.1| ATPase involved in DNA replication initiation [Desulfitobacterium hafniense Y51] gi|219536332|gb|ACL18071.1| chromosomal replication initiator protein DnaA [Desulfitobacterium hafniense DCB-2] Length = 449 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 154/470 (32%), Positives = 249/470 (52%), Gaps = 29/470 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + ++ S+L+N++ + +W + + + +SVP F K W+++RY I Sbjct: 5 SLQVLWQETLSKLENELSKPSFETWLSSTYLLDIEGDTLIVSVPNEFAKDWLESRYAPII 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 Q + + LV S+ P Sbjct: 65 RSTVQSILGQSMNLRFLVTSIHE-----------------TTQPGDNQNKASSNSKAEPA 107 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+S++ F TF+ G+SNR A AA ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 108 DNKTLNSKYTFDTFVIGNSNRFAHAAALAVAESPALAY-----NPLFIYGGVGLGKTHLM 162 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI NA I+R P+ RV+Y+++E F +IRD + ++ RN+D+LLIDD+QFL G Sbjct: 163 HAIGNAVIQRSPSTRVLYVSSEKFTNELIESIRDQNPIEFRNHYRNVDILLIDDIQFLAG 222 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L D+ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R Sbjct: 223 KEGTQEEFFHTFNALHDANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETR 282 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+ + + L + EV++++A + ++ REL+GA +++ S +T E Sbjct: 283 IAILRK-----KAKLENLQVANEVMVYIADKIHSNIRELEGALIRVMAVGSLTSNPITVE 337 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E L ++ K++ IE IQ+ VA Y++S + + +R R V PRQ+AMYLS+ Sbjct: 338 TAAEALKDIIPVSTPKEITIEMIQQAVADFYHLSLGEFKAKKRTRAVAFPRQIAMYLSRE 397 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P IG FG RDHTTVLHA K+ + + D L +++ + ++I Sbjct: 398 LTDNSLPRIGDEFGGRDHTTVLHAYDKISESRQNDPLLDRKINEIIQMIQ 447 >gi|326797445|ref|YP_004315264.1| Chromosomal replication initiator protein dnaA [Sphingobacterium sp. 21] gi|326548209|gb|ADZ76594.1| Chromosomal replication initiator protein dnaA [Sphingobacterium sp. 21] Length = 476 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 129/484 (26%), Positives = 243/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S++ +K+ + + +WF+ + + N++ + VP+ F W++ Y+ Sbjct: 1 MEKTSTSVWNSCLEIIKDNIPAQSFKTWFEPISALRLEGNVLTIQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + K +++ +E I+V + ++ T + PS + P+ L K Sbjct: 61 GLLRKTVKKQLGENGRLEYNIVVEKSSNKNIPYTTNMPSNGNGAEGKKQSIPVPVALNKD 120 Query: 149 TISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P L+ + F FIEG NR+A +A ++A NPL Sbjct: 121 IKNPFVIPGLKKLQVDPQLNQNYTFDNFIEGDCNRLARSAGFAVASKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ VGLGKTHL QAI N + P+ V+Y++ E F +F ++++N + + + Sbjct: 177 MIYGGVGLGKTHLAQAIGNEVKRHMPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNFYQA 236 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ SR + Sbjct: 237 MDVIIMDDVHNFAGKDKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S + + D E R +ILK ++ + + EV+ +VA + + REL+GA L Sbjct: 297 GLSADMQVPDLETRMAILKKKMYAD-----GIELPYEVVEYVANNIDNNVRELEGAMVSL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + + + +A +L + + K++ I+ IQ++V +++ + + S R R Sbjct: 352 LAQATLNKKEIDLNLAKSMLKNFIKNSH-KEISIDYIQKLVCEYFEVPVEMVKSKTRKRE 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ++MYL+K T S IG FG RDH+TV++A + VE +++TD K V+ ++ Sbjct: 411 IVQARQISMYLAKNHTKTSLKSIGAYFGGRDHSTVIYACQTVEDLIDTDKKFKAYVQDIQ 470 Query: 498 RLIS 501 + + Sbjct: 471 KKLK 474 >gi|206900692|ref|YP_002251513.1| chromosomal replication initiator protein DnaA [Dictyoglomus thermophilum H-6-12] gi|206739795|gb|ACI18853.1| chromosomal replication initiator protein DnaA [Dictyoglomus thermophilum H-6-12] Length = 441 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 145/472 (30%), Positives = 254/472 (53%), Gaps = 38/472 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + +SI+ S L ++ + +W + LK ++ + L P F K W++ YL Sbjct: 1 ME-DIKSIWEEALSYLSLEISRPGFETWIKTLKPLTLEGGKIVLQTPNKFSKDWLEEYYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I ++ ++ + VEIL + EK + P K+ ++T+ + Sbjct: 60 PLIEEVIRKVTQKDFKVEIL-------AEEKEDNIPEEKKVEYLSTSYN----------- 101 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ G SNR A AA ++++ Y NPL I+ VGLGKT Sbjct: 102 ------NLNPKYTFDTFVVGDSNRFAHAAALAVSQNPGKAY-----NPLLIYGGVGLGKT 150 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI ++ ++ P RVVY + E F AI+++ ++ RNID+LLIDD+QF Sbjct: 151 HLIHAIGHSIQEKYPKARVVYASMEKFTVELIDAIKEDGMTKFRNRYRNIDVLLIDDIQF 210 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF + N+L ++ KQ+V +DR P E+ +L+ R+RSR + G+ + D Sbjct: 211 LAGKERTQEEFFYTFNALYEAGKQIVLTSDRVPKEIPTLEDRLRSRFEWGLIADIQPPDL 270 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK + + + +EV+ +A + ++ REL+GA + + S + + Sbjct: 271 ETRIAILKKKAEAEKA-----KVPDEVIEFIASQIQSNIRELEGALIRTIAFASLNNMPI 325 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A +L ++ K + +++I + V++++NIS L R + + PRQ+AMYL Sbjct: 326 NLELAKTVLKDIIQPQI-KNITMQNILQAVSEYFNISIEQLKGKGRSQEIAIPRQIAMYL 384 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ +T S P+IG G RDHTTVLHA K++++ +TD+++KK ++ ++ + Sbjct: 385 ARTLTDLSLPKIGEELGGRDHTTVLHAYEKIQELYQTDLSIKKAIQDIQNRL 436 >gi|298290591|ref|YP_003692530.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] gi|296927102|gb|ADH87911.1| chromosomal replication initiator protein DnaA [Starkeya novella DSM 506] Length = 503 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 226/491 (46%), Positives = 315/491 (64%), Gaps = 12/491 (2%) Query: 17 IAEKTPNVDVDKRCLEVN-CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS 75 + D E N + V RL+ ++G +VY+SWF RL+ V IV LS Sbjct: 19 ASSAAARAGKDSDAREANHTREAWDRVRRRLRAEIGEEVYSSWFPRLELDGVQGGIVRLS 78 Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN 135 VPT FLK WI+ Y++ ++ L+QEE S VE++VR+ L S +I ++P Sbjct: 79 VPTRFLKTWIQQHYIDRLSALWQEEASA-ARVELIVRTAVL--RAPGTGSATIRSVTPAV 135 Query: 136 TNISKSPIILGKQTISPV---FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 ++ P + +P GSPLD R F+++ G SNR+A AAQ +A + + Sbjct: 136 RVVATEPAAAVAVSANPAEVANGSPLDPRLTFASYRLGESNRLAHAAAQKVAGAPA--GS 193 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPL++HA+VGLGKTHLLQAIA A + RVVYLTAE FM+ F +A++ AL Sbjct: 194 GPVFNPLYLHAAVGLGKTHLLQAIAAAGAEN--GRRVVYLTAERFMYGFVAALKSQSALA 251 Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 K+ LR ID L+IDD+QFLQGK +Q EFCH LN+L+DS +QVV AADRPP+EL++L+ R+ Sbjct: 252 FKEQLRGIDTLVIDDLQFLQGKSVQQEFCHTLNALMDSGRQVVIAADRPPAELDALEERV 311 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 RSRL GG+ V + D E++ IL R A ++ P N+ +VL +AR +GR+LD Sbjct: 312 RSRLAGGLVVEIAPLDEELKLEILAARTASLGQQHPGFNVPGDVLGFIARHCGQNGRDLD 371 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA N+L+ + + +T E+A+ + LV +GE K++R++DI R+VAKHYN+SR D+LS Sbjct: 372 GALNRLLAHNQLTSRAITLEMAETAVRDLVRSGEPKRVRVDDILRIVAKHYNVSRADILS 431 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 RR VV+PRQ+AMYL+K +T RS PEIGRRFG RDHTTVLHAVRK++ ++ TD L + Sbjct: 432 QRRTANVVKPRQIAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIDGLVGTDRALAE 491 Query: 492 EVELLKRLISE 502 EVE LKRL+S+ Sbjct: 492 EVETLKRLVSD 502 >gi|254694807|ref|ZP_05156635.1| chromosomal replication initiation protein [Brucella abortus bv. 3 str. Tulya] Length = 540 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 367/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 161 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 220 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+ +RQ RVVYLTAEYFMWRFA Sbjct: 221 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAAFQRQEKARVVYLTAEYFMWRFA 277 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 278 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 337 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 338 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 397 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 398 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 457 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 458 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 517 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 518 VGADTKLAQELELLKRLIND 537 >gi|307249123|ref|ZP_07531130.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306854411|gb|EFM86607.1| Chromosomal replication initiator protein dnaA [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 451 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 155/473 (32%), Positives = 257/473 (54%), Gaps = 25/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L Sbjct: 1 MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKFL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I L + S+ + + +R P+ K+ S + + S S Sbjct: 60 AEIVDLAR-FLSKNDNLAVSIRVGIKPAEHKSVSPSTTSNNSKEEAQES----------- 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + F + L+ F F++G SN++A AQ +A+ + NP ++ GLGKT Sbjct: 108 NKNFRTGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF Sbjct: 164 HLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 224 FANKEASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPEL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL + + E+ + + EEV + + + T+ REL+GA N+++ +F + Sbjct: 284 ETRVAIL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQI 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L Sbjct: 339 TIDAVREALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 398 AKELTNHSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 450 >gi|313674130|ref|YP_004052126.1| chromosomal replication initiator protein dnaa [Marivirga tractuosa DSM 4126] gi|312940828|gb|ADR20018.1| chromosomal replication initiator protein DnaA [Marivirga tractuosa DSM 4126] Length = 471 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 145/475 (30%), Positives = 250/475 (52%), Gaps = 16/475 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +C+S++ +K VG + +WF ++ + +N++ + VP+ F W++ Y+ Sbjct: 1 MVKDCQSVWNNCLHSIKEGVGEQSFNTWFSPIEPVKLENNVLTIQVPSQFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + K+ +E +E ++V T + P+ K + + P+ Sbjct: 61 HILRKVIHQELGPEGRLEYSVIVDKGNDKYKPFTINLPNNNKSNKPKEQQREQPLNPFAL 120 Query: 149 T--ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 S L+ + F TFIEG NR+A +A ++A+ NPL I+ VG Sbjct: 121 NGVDLSQQNSQLNPNYTFDTFIEGDCNRLARSAGYAVAKKPG----ITSFNPLMIYGGVG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QAI N V+Y+++E F +F A+R+N + + +ID L+ID Sbjct: 177 LGKTHLVQAIGNEIKDTLNGKFVLYVSSEKFTNQFIDALRNNKIQDFSNYYLHIDALIID 236 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK Q F H+ N L + KQ++ +DRPP +L+ L+ R+ SR + G++ L Sbjct: 237 DVQFLGGKERTQEIFFHIFNHLHQNGKQIIMTSDRPPRDLKGLEDRLLSRFKWGLTADLQ 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E R +I++N + E ++I E+V+ ++A +V T+ REL+G L+ S Sbjct: 297 QPDLETRIAIIQN-----KMESDGIHIPEDVIEYLAYSVDTNIRELEGVLISLIAHASLN 351 Query: 386 -PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + E+A + L ++V+ ++ I+ IQ+ +A+H+ + +DL + R + +V RQV Sbjct: 352 RKEIDLELAKQTLKNIVHD-IESEVGIDFIQKTIAEHFAVKIDDLKAKTRKKEIVIARQV 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 +MY K T S IG FG RDH+TV+HAV+ V M++ D ++E+E LK+ Sbjct: 411 SMYFCKEHTNHSLKSIGYHFGGRDHSTVIHAVQSVNDMMQVDKRFREEMEELKKR 465 >gi|172056046|ref|YP_001812506.1| chromosomal replication initiator protein DnaA [Exiguobacterium sibiricum 255-15] gi|226735812|sp|B1YGB2|DNAA_EXIS2 RecName: Full=Chromosomal replication initiator protein DnaA gi|171988567|gb|ACB59489.1| chromosomal replication initiator protein DnaA [Exiguobacterium sibiricum 255-15] Length = 464 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 148/472 (31%), Positives = 260/472 (55%), Gaps = 16/472 (3%) Query: 34 NCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N ++ V S ++ + Y W + + ++ + +S P F W++ +YL Sbjct: 3 NAAELWHNVLSVIEEEQRTPKASYDMWLKSTEGVTLNGTTLIVSAPAAFTVTWLERQYLS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + +E ++ + A +++ + +++P T K+P + +S Sbjct: 63 LLEDTVEEVTGSRLDIQFIEEGQAKHMLDRQNEEVEVMEVAPAKTKAQKTPKSSDELVMS 122 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTH Sbjct: 123 EL--GQLNEKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTH 175 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI ++ ++ Y+++E F F ++IRDN + ++ RNID+LLIDD+QFL Sbjct: 176 LMHAIGQYVQDQKLGTKIAYVSSEQFTNDFINSIRDNKTVQFRNKYRNIDVLLIDDIQFL 235 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 236 AGKEQTQEEFFHTFNALHNDQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLE 295 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL+ + Q L+++ EV++++A + T+ REL+GA +++ + + Sbjct: 296 TRIAILRKKANAEQ-----LDVSNEVMLYIASQIDTNIRELEGALTRVIAYANLVGRTID 350 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L +++ E +K+ I DIQ V+KH+N+ +DL + +R +++ PRQ+AMYLS Sbjct: 351 PNVAAEALHNIMPASEPRKVTIRDIQESVSKHFNLPFDDLKAKKRTKSIAFPRQIAMYLS 410 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT S P+IG FG RDHTTV+HA K+ ++++D K +E +K + Sbjct: 411 REMTESSLPKIGEEFGGRDHTTVIHAHEKISTLVKSDGETGKVIEQIKHELK 462 >gi|330685249|gb|EGG96910.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU121] Length = 454 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 253/470 (53%), Gaps = 21/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V K ++ + ++ + + +S+ ++ + V +F W+ +Y E Sbjct: 1 MSEKEIWEKVLDLAKERISKISFDTFVKDTQLYSLQNDKAIVLVSESFNANWLNQKYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + E + G E+ R + + K + P + + +P Sbjct: 61 MQSIIYE----VIGYEVKPRFITEEELSKYMKTDQKQPEEPATPETHQ-----HQNVDNP 111 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 112 GGIEQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 166 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + PN V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 167 MHAIGHHVLDNNPNANVIYTSSEKFTNEFIKSIRDNQGDAFREKYRNIDVLLIDDIQFIQ 226 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L ++ KQ+V ++DRPP E+ L R+RSR + G+ V + DYE Sbjct: 227 NKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEISKLSDRLRSRFEWGLIVDITPPDYET 286 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 287 RMAILQK-----KIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQGKPITT 341 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L ++ ++KK+ I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 342 ELAAEALKDIIQAPKSKKITIQDIQKVVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 401 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ ++ D T K+EVE L++ I Sbjct: 402 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIVNDIKADPTFKQEVENLEKEI 451 >gi|222053118|ref|YP_002535480.1| chromosomal replication initiator protein DnaA [Geobacter sp. FRC-32] gi|254777903|sp|B9M7S1|DNAA_GEOSF RecName: Full=Chromosomal replication initiator protein DnaA gi|221562407|gb|ACM18379.1| chromosomal replication initiator protein DnaA [Geobacter sp. FRC-32] Length = 445 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 145/467 (31%), Positives = 257/467 (55%), Gaps = 27/467 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E I+ S +K + P Y +W + + FH+V + L VP+ F+K W+ +YL I + Sbjct: 2 EKIWLEAQSNIKKVLTPQTYNTWIKPIHFHNVSDTNLTLEVPSKFIKEWVTEKYLSIIIE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + V+ + + +K ++ + I T + F Sbjct: 62 AISSLTNIKYQVDFKITEKSQVEKKKV--------------DLQATEKIENDSTRNVDFN 107 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F +F+ G+SN+ A A+Q++A + Y NPLFI+ VGLGKTHLL A Sbjct: 108 TNLNPKYTFDSFVCGASNQFAHAASQAVANNPACNY-----NPLFIYGGVGLGKTHLLIA 162 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N + ++ Y ++E FM +++R ++ R +D+LLIDD+QF+ GK Sbjct: 163 IGNQIRENNKKAKICYYSSEKFMNEMINSLRYKKMDEFRNKFRKMDILLIDDIQFMAGKE 222 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + D E + + Sbjct: 223 ATQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPDIETKIA 282 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 ILK + + + + +V + +A + T++ REL+G +L S ++ +A Sbjct: 283 ILKK-----KSDLNSITLPNDVALFLASSATSNVRELEGMLIRLGAYASLTGSEISLNMA 337 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++L ++ +TK + +E IQ+ VA H+ I ++L S++R++T V PRQ+A+Y+S+ +T Sbjct: 338 RDILKDII-VEKTKDITVEMIQKHVADHFKIKVSELKSDKRLKTFVIPRQIAIYISRELT 396 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+PEIG RFG +DH+T++H+V+K+EK +E D+ +K VE +K+ + Sbjct: 397 KASYPEIGERFGGKDHSTIIHSVKKIEKQMENDLEIKNTVEKMKKEL 443 >gi|88813024|ref|ZP_01128266.1| chromosomal replication initiator protein DnaA [Nitrococcus mobilis Nb-231] gi|88789657|gb|EAR20782.1| chromosomal replication initiator protein DnaA [Nitrococcus mobilis Nb-231] Length = 432 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 153/470 (32%), Positives = 242/470 (51%), Gaps = 43/470 (9%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ RL+ +V +W + L+ ++ L P F+ W+++ + + I Sbjct: 2 ANSLWKGCLRRLEREVPDQQLNTWIRPLQAQE-DGKLLRLLAPNRFVLDWVRDHFADRIQ 60 Query: 95 KLFQEEHSR-IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +L + +++ + + P+ T S Sbjct: 61 ELLVGQCPDCPPKLKLEIGTNLAPTRATTVHPSS-------------------------- 94 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ F F TF+EG SN++A A+ + E Y NPLFI+ VGLGKTHL+ Sbjct: 95 --SLLNPNFTFDTFVEGKSNQLARAASSQLVENPGGAY-----NPLFIYGGVGLGKTHLM 147 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI NA ++R P+ V+YL +E F+ A++ N K R ++ LLIDD+QF G Sbjct: 148 HAIGNALLQRLPDAEVLYLHSERFVGDMVKALQHNAINEFKRYYRGVNALLIDDIQFFAG 207 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +QVV + DR P E++ L+ R++SR G++V + ++E R Sbjct: 208 KERSQEEFFHTFNALLEGQQQVVMSCDRYPKEVQGLEERLKSRFGWGLTVAIEPPEFETR 267 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL +++ + + EV +A+ + ++ REL+GA +++ F +T E Sbjct: 268 AAIL-----MTKANLEGIELPHEVAFFIAKRIRSNVRELEGALRRVIANSYFTGERITVE 322 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 L L+ K + IE+IQR VA++Y I DLLS RR R++ RPRQ+AM L+K Sbjct: 323 FTKGALRDLLAL-HDKLVTIENIQRTVAEYYKIRLTDLLSKRRSRSITRPRQIAMALAKS 381 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RKV ++++ D L ++ L R +S Sbjct: 382 LTSHSLPEIGNAFGGRDHTTVLHACRKVAELMKADTRLAEDYNNLLRTLS 431 >gi|78221229|ref|YP_382976.1| chromosomal replication initiation protein [Geobacter metallireducens GS-15] gi|123742956|sp|Q39ZS3|DNAA_GEOMG RecName: Full=Chromosomal replication initiator protein DnaA gi|78192484|gb|ABB30251.1| chromosomal replication initiator protein, DnaA [Geobacter metallireducens GS-15] Length = 450 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 148/465 (31%), Positives = 251/465 (53%), Gaps = 22/465 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ S L + + +W + ++F N + L P F++ ++ YL I + Sbjct: 2 EDVWLQAQSNLAKVLTHQTFTTWIEPIRFAGAHKNTLLLEAPNQFIRDRVRESYLPMILE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + VE+ V A EKTA SP + + + F Sbjct: 62 SVRSLTDSHFQVELQV---AARQQEKTAKSPRKSHTEDELGPVESEKCAPAE------FS 112 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L++++ F TF+ G SN+ A AA S+A + Y NPLFI+ VGLGKTHLL A Sbjct: 113 TNLNAKYTFDTFVCGGSNQFAHAAALSVANNPAGKY-----NPLFIYGGVGLGKTHLLTA 167 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + + RV + T+E FM + +R ++ R +DLLLIDD+QF+ GK Sbjct: 168 IGNQVLTKNRKARVCFYTSEKFMNELINCLRYQKMEQFRNKFRKMDLLLIDDIQFIAGKE 227 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ+V +D+ P ++ L+ R+RSR + G+ + D E + + Sbjct: 228 RTQEEFFHTFNALYESHKQIVVTSDKFPKDIPGLEERLRSRFEWGLIADIQPPDTETKVA 287 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + + ++V + +A + +T+ REL+G +L S +T ++A Sbjct: 288 ILSK-----KADSDGIRLPDDVALFLASSASTNVRELEGMLIRLGAVASLTGKNITLDMA 342 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E+L ++ +TK++ +E IQ+ VA H+NI +L S++R++ +V PRQ+A+YL + +T Sbjct: 343 REVLKDII-VDKTKEVTVEMIQKYVADHFNIKVAELKSDKRLKALVVPRQIAIYLCRDLT 401 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 S+P+IG +FG +DH+T++H+V+KV+K+L D LK +E L++ Sbjct: 402 KASYPDIGEKFGGKDHSTIIHSVKKVDKLLSQDFELKSTIETLRK 446 >gi|170746452|ref|YP_001752712.1| chromosomal replication initiation protein [Methylobacterium radiotolerans JCM 2831] gi|170652974|gb|ACB22029.1| chromosomal replication initiator protein DnaA [Methylobacterium radiotolerans JCM 2831] Length = 498 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 213/479 (44%), Positives = 303/479 (63%), Gaps = 18/479 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + V RL+ ++G DV+ASWF RL+ +V L+VPT FLK+WI++ YL+ + Sbjct: 25 SAWARVKRRLRAELGEDVFASWFARLELETVAGGTARLTVPTRFLKSWIESHYLDRVLNT 84 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS-----------PIN-TNISKSPII 144 F+ E I +E+ VR P A S PI ++ +P Sbjct: 85 FKAEVEEIARIEVGVRGTGAPVRPVAAGVAKAGPASGPLARLHATSAPIPVAAVAPTPEA 144 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 G + + G+PLD+R F++F+ G SN +A AA+ +A G NPL++HA Sbjct: 145 RGGEAGGDLSGTPLDARLTFASFVIGRSNALAHAAAERVANHLGEG---ALYNPLYLHAG 201 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHLL I +A+ + RV+YLTA+ FM+ F +A++ AL K+ LR IDLL+ Sbjct: 202 VGLGKTHLLHGIGHAARE--AGRRVIYLTADRFMYGFVNALKTQSALAYKERLRGIDLLI 259 Query: 265 IDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 +DD+QF+QGK IQ EF H +N+L+D+ +QVV A+DRPP+ELE+LD R+RSRL GG+ V + Sbjct: 260 LDDVQFIQGKSIQAEFGHTINALIDAGRQVVVASDRPPTELEALDERVRSRLGGGLVVEI 319 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D +R SIL RLA + P +++ +V +VAR +T +GR+L+GA N+L+ + Sbjct: 320 TALDEALRVSILSARLAAVRASHPGFDVSPQVAAYVARAITANGRDLEGAVNRLLAHATL 379 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR VV+PRQ Sbjct: 380 TGTAVTMETAESAIRDLVKNREPKRIKIEDIQKLVASRYNVSRSDILSERRTAAVVKPRQ 439 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVELLKR++ + Sbjct: 440 IAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDSVLGDEVELLKRMLQD 498 >gi|134297882|ref|YP_001111378.1| chromosomal replication initiation protein [Desulfotomaculum reducens MI-1] gi|172044200|sp|A4J0F0|DNAA_DESRM RecName: Full=Chromosomal replication initiator protein DnaA gi|134050582|gb|ABO48553.1| chromosomal replication initiator protein DnaA [Desulfotomaculum reducens MI-1] Length = 441 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 149/474 (31%), Positives = 259/474 (54%), Gaps = 35/474 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + + + V RL+ QV + +W + K + N + + VP +F K+W+ +RY Sbjct: 1 MQNDVLARWEQVLIRLEKQVNKHSFETWLTKCKPVAFYDNTIIIEVPDHFSKSWLADRYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + ++ + ++ ++ + + + P + ++ I + Sbjct: 61 PIIKQAYESIMHQEISLQFIL------------AGQEVDQPKPKERSSEETYINI----- 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ R+ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 104 -------LNPRYTFDTFVVGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKT 151 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ NL+V Y+T+E F ++IRD+ + ++ R++D+LLIDD+QF Sbjct: 152 HLMHAIGHYILENNQNLKVAYVTSEKFTNELINSIRDDQTVEFRNKYRSMDILLIDDIQF 211 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+ K Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + DY Sbjct: 212 LEKKERTQEEFFHTFNTLYEANKQIIISSDRPPKEIATLEDRLRSRFEWGLITDMQSPDY 271 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + + NI +E + ++A + ++ REL+GA ++ S Sbjct: 272 ETRVAILRKKAQLEAIK----NIPDETIAYIADKIQSNIRELEGALIRVSAFSSLEQRDA 327 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A E+L ++ + K + I + VA Y + DL + +R R+V PRQVAMYL Sbjct: 328 TPQLAAEVLKDVIAPSKPKIITTPLIMQTVADFYGLRIEDLKAKKRTRSVAFPRQVAMYL 387 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 ++ +T S P+IG FG RDHTTVLHA K+ L +D L++ ++ LK+ I E Sbjct: 388 ARELTDLSLPKIGDEFGGRDHTTVLHACDKITTDLSSDPVLQETIKELKKRIGE 441 >gi|260431698|ref|ZP_05785669.1| chromosomal replication initiator protein DnaA [Silicibacter lacuscaerulensis ITI-1157] gi|260415526|gb|EEX08785.1| chromosomal replication initiator protein DnaA [Silicibacter lacuscaerulensis ITI-1157] Length = 467 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 162/468 (34%), Positives = 269/468 (57%), Gaps = 10/468 (2%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + + ++L VG + + +W + L+F + + SVPTNF+ ++ + + I Sbjct: 6 TQEKWGQLRNKLLKAVGRNNFTTWIEPLEFQELNGGVAVFSVPTNFMGNYVSQNFADLIL 65 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +Q ++ R A +P+ + + +G + + Sbjct: 66 YELNTAGESVQR--LVFRVAANTPARPATEAPAAEDIPQTAEIDAPVEASVGSNALESLQ 123 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 +PLD+RF F TF+ G N +A AA+ ++E V NPL ++ VGLGKTHL+ Sbjct: 124 AAPLDARFTFDTFVVGKPNELAHAAARRVSEG-----GPVTFNPLVLYGGVGLGKTHLMH 178 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA ++P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ GK Sbjct: 179 AIAWELKTKRPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGK 238 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R Sbjct: 239 DSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEERVKSRLQCGLVVDLHPTDYELRL 298 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL+ ++ K P L I + VL +A ++T+ R L+GA +L S + ++ Sbjct: 299 GILQTKVQQYTKTYPDLKIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMDL 358 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L+ ++ +K+ +E+IQR V+ +YNI +D++ +R+R+ RPRQVAMYL K + Sbjct: 359 TQDCLADVLRAS-ERKITVEEIQRKVSDYYNIRLSDIIGPKRLRSYARPRQVAMYLCKQL 417 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGRRFG RDHTTV+H V+++E++ TD + ++VE+L+R + Sbjct: 418 TSRSLPEIGRRFGGRDHTTVMHGVKRIEELKLTDGQIAEDVEMLRRAL 465 >gi|254463282|ref|ZP_05076698.1| chromosomal replication initiator protein DnaA [Rhodobacterales bacterium HTCC2083] gi|206679871|gb|EDZ44358.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae bacterium HTCC2083] Length = 458 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 172/466 (36%), Positives = 272/466 (58%), Gaps = 15/466 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + L+ VG + Y +W L F + SVPTNFL ++ + + I Q Sbjct: 6 WGRLQDILRASVGKNNYTNWIGPLSFIGAKSGVASFSVPTNFLGNYVSQNFGDMIVYQAQ 65 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + IQ V V ++ + S + + +P + G+PL Sbjct: 66 QAGHDIQRVHFAV-------LKANHADTSKQHAAVAPKPDTHAPAQKSSNFPDALAGAPL 118 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F TF+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 119 DKRFTFDTFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHAIAH 173 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 +P+L+V+YL+AE FM+RF A+R+ ++ K R +D+L++DD+QF+ GK Q Sbjct: 174 ELQSSRPDLKVLYLSAEQFMYRFVQALRERKMMDFKSLFRAVDVLMVDDVQFIGGKDSTQ 233 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D KQ++ +ADR P E++ L+ RI+SRLQ G+ V L DYE+R IL+ Sbjct: 234 EEFFHTFNALVDQNKQIIISADRAPGEIKGLEDRIKSRLQCGLVVDLHPTDYELRLGILQ 293 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 +++ I + + P L+I+E ++ +A ++T+ R L+GA +L S +T ++ + Sbjct: 294 SKVEIQKAQYPGLHIDEGIIEFLAHRISTNVRVLEGALTRLFAFASLVGREITMDLTVDC 353 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LS ++ +K+ +E+IQR V++HYNI ++L+ +RVR RPRQVAMYL K +T RS Sbjct: 354 LSDVLRAS-ERKITVEEIQRRVSEHYNIRLSELIGPKRVRNFARPRQVAMYLCKQLTSRS 412 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIGRRFG RDHTTV+H V+++E++ D + +++E+L+R + E Sbjct: 413 LPEIGRRFGGRDHTTVMHGVKRIEELKVQDGQIAEDIEMLRRALEE 458 >gi|239637286|ref|ZP_04678273.1| chromosomal replication initiator protein DnaA [Staphylococcus warneri L37603] gi|239597123|gb|EEQ79633.1| chromosomal replication initiator protein DnaA [Staphylococcus warneri L37603] Length = 454 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 254/470 (54%), Gaps = 21/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V K ++ + ++ + + +S+ ++ + V +F W+ +Y+E Sbjct: 1 MSEKEIWEKVLDLAKERISKISFDTFVKDTQLYSLQNDKAIVLVSESFNANWLNQKYIEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + E + G E+ R + + K + P + + +P Sbjct: 61 MQSIIYE----VIGYEVKPRFITEEELSKYMKTDQKQPEEPATPETHQ-----HQNVDNP 111 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 112 GGIEQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 166 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + PN V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 167 MHAIGHHVLDNNPNANVIYTSSEKFTNEFIKSIRDNQGDAFREKYRNIDVLLIDDIQFIQ 226 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L ++ KQ+V ++DRPP E+ L R+RSR + G+ V + DYE Sbjct: 227 NKEQTQEEFFHTFNELHNNNKQIVISSDRPPKEISKLSDRLRSRFEWGLIVDITPPDYET 286 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 287 RMAILQK-----KIEEENLDIPMESLNYIANQIQSNIRELEGALTRLLAYSQLQGKPITT 341 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L ++ ++KK+ I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 342 ELAAEALKDIIQAPKSKKITIQDIQKVVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 401 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ ++ D T K+EVE L++ I Sbjct: 402 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIVNDIKADPTFKQEVENLEKEI 451 >gi|327478613|gb|AEA81923.1| chromosomal replication initiation protein [Pseudomonas stutzeri DSM 4166] Length = 486 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 151/494 (30%), Positives = 250/494 (50%), Gaps = 41/494 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET---- 92 ++ L++++ + +W + L+ + + + P F+ W+ +YL Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEG-DGDELRVYAPNRFVLDWVNEKYLSRLLEL 62 Query: 93 -------ITKLFQEEHSRIQ------------GVEILVRSVALPSVEKTASSPSITKLSP 133 + + + A + A + P Sbjct: 63 LSERSTGLAPALSLLIGSKRTSAAALPSAAAAARAQPQPAAAESAAPAAALQQQAPRFEP 122 Query: 134 INTNISKSPIILGKQTISPVFG----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 + + ++T+ G S L+ F F F+EG SN++A AA +A+ H Sbjct: 123 LVAETPEPEPPRTERTVQVEGGLKHTSYLNRTFTFENFVEGKSNQLARAAAWQVADNPKH 182 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 GY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ A++ N Sbjct: 183 GY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNA 237 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 K R++D LLIDD+QF K Q EF H N+LL+ +QV+ +DR P E++ L Sbjct: 238 INEFKRFYRSVDALLIDDIQFFAKKERSQEEFFHTFNALLEGGQQVILTSDRYPKEIDGL 297 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R++SR G++V + + E R +IL + + + K+++ + +A+ + ++ Sbjct: 298 EERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAAFFIAQRIRSNV 352 Query: 369 RELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +++ F +T E+ E L L+ K + +++IQR VA++Y I + Sbjct: 353 RELEGALKRVIAHAHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQRTVAEYYKIKIS 411 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA RK+ ++ ETD Sbjct: 412 DLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIAELRETDA 471 Query: 488 TLKKEVELLKRLIS 501 ++++ + L R ++ Sbjct: 472 DIREDYKNLLRTLT 485 >gi|84514654|ref|ZP_01002018.1| chromosomal replication initiation protein [Loktanella vestfoldensis SKA53] gi|84511705|gb|EAQ08158.1| chromosomal replication initiation protein [Loktanella vestfoldensis SKA53] Length = 447 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 174/468 (37%), Positives = 272/468 (58%), Gaps = 26/468 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 I+ V LK +G + Y++W + L+F + + VPTNF+ ++ + + I Sbjct: 2 TNDIWAKVLLTLKGALGVNNYSNWIEPLEFAQLADGVAVFHVPTNFIGNYVSQNFGDQII 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ +Q ++ V V+ K A P+ + + + Sbjct: 62 YQLGQQGEDVQRLQFKV-PVSAQVTLKPAPKPTARIV-----------------NVDDIS 103 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 GSPLD+RF F TF+ G N +A AA+ +A+ V NPLF++ VGLGKTHL+ Sbjct: 104 GSPLDARFTFDTFVVGKPNELAHAAARRVADG-----GPVTFNPLFLYGGVGLGKTHLMH 158 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA+ +R P L V+YL+AE FM+RF +A+R+ ++ K R++D+L++DD+QF+ GK Sbjct: 159 AIAHELQRRSPELNVLYLSAEQFMYRFITALRERKMMDFKQLFRSVDVLMVDDVQFIAGK 218 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ++ +ADR P E++ L+ RIRSRLQ G+ V L DYE+R Sbjct: 219 DSTQEEFFHTFNALVDGQKQIIISADRAPGEIKDLEDRIRSRLQCGLVVDLHPTDYELRL 278 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL++++ + P L + VL +A ++T+ R L+GA +L S + E+ Sbjct: 279 GILQSKVDAFSAQYPGLAVAPGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREINLEL 338 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + LS ++ +K+ +E+IQR V++HYNI +D++ +RVR RPRQ+AMYL+K M Sbjct: 339 TQDCLSDVLKAS-DRKVTVEEIQRKVSEHYNIRLSDMIGPKRVRNYARPRQMAMYLAKQM 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGRRFG RDHTTV+H VRK+E++ D + ++ELL+R + Sbjct: 398 TSRSLPEIGRRFGGRDHTTVMHGVRKIEELKLLDSQIADDLELLRRAL 445 >gi|167629172|ref|YP_001679671.1| chromosomal replication initiator protein dnaa [Heliobacterium modesticaldum Ice1] gi|226735814|sp|B0TAK8|DNAA_HELMI RecName: Full=Chromosomal replication initiator protein DnaA gi|167591912|gb|ABZ83660.1| chromosomal replication initiator protein dnaa [Heliobacterium modesticaldum Ice1] Length = 443 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 253/473 (53%), Gaps = 34/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + S++ LK ++ P + +W + + ++ + H+ VP + + W++NRY Sbjct: 1 MTSQFASLWQQSLEILKQELKPASFDTWLKNTQLVTIQNGEAHIGVPNDLARDWLENRYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + V PS + S PS P+ T S P+ Sbjct: 61 TLVKNALSVVLGESVEVRFFT-----PSADSRRSEPS---RRPVATEESSPPL------- 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ G+SNR A + NPLF++ VGLGKT Sbjct: 106 -------LNPKYTFDTFVVGNSNRF-----AHAAALAVAEAPAKAYNPLFVYGGVGLGKT 153 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + I++ P RVVY+++E F +AIRD+ + ++ RNID+LLIDD+QF Sbjct: 154 HLMQAIGHFVIEQHPQSRVVYVSSEKFTNELINAIRDDKTVEFRNRYRNIDVLLIDDIQF 213 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L +S+KQ++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 214 LAGKERTQEEFFHTFNALHESSKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDINPPDL 273 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + L++ EV++ +A + ++ REL+GA N+++ + L Sbjct: 274 ETRIAILRK-----KAILENLDVPNEVMVFIANIIQSNIRELEGALNRVIAYANLSGKSL 328 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T+E+A+E L +++ + K + I IQ +VA+HYN+ D + +R R V PRQ+AMYL Sbjct: 329 TSEVAEEALKNIIPSHRAKVITIALIQEIVAEHYNMRVEDFKAKKRTRDVAFPRQIAMYL 388 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ M S P+IG FG RDHTTV+HA K+ K +E D L+ +++LK I Sbjct: 389 SREMLDVSLPKIGEEFGGRDHTTVIHAHEKITKDIEKDPQLEMTIQVLKEKIQ 441 >gi|163733262|ref|ZP_02140706.1| chromosomal replication initiation protein [Roseobacter litoralis Och 149] gi|161393797|gb|EDQ18122.1| chromosomal replication initiation protein [Roseobacter litoralis Och 149] Length = 454 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 173/466 (37%), Positives = 277/466 (59%), Gaps = 19/466 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + RL VG + Y +W + ++F + + VPTNFL ++ + + I + Sbjct: 6 WGQLRQRLLKTVGQNNYKNWIEPIEFGNTQDGVATFDVPTNFLGNYVSQNFADLILHEVR 65 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 +E+ ++ + V PS + ++P T S + K S + +PL Sbjct: 66 QENPTVRRLRFAV-----PSHVNSTATPPRTGQSNAPRGAA------PKTPRSGLSTAPL 114 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+RF F FI G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 115 DARFTFDNFIVGKPNELAHAAAKRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHAIAH 169 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 R+P + V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Q Sbjct: 170 DLRLRRPEINVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKGSTQ 229 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D KQ++ + DR P E++ ++ R++SRLQ G+ V L DYE+R IL+ Sbjct: 230 EEFFHTFNALVDQNKQIIISGDRAPGEIKDMEERVKSRLQCGLVVDLHPTDYELRLGILQ 289 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 +++ +K P L+I++ VL +A ++T+ R L+GA +L S + E+ + Sbjct: 290 SKVEQQRKNYPGLDISDGVLEFLAHRISTNVRVLEGALTRLCAFASLVGREIDMELTQDC 349 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LS ++ +K+ +E+IQR V+ HYNI +D++ +R+R+ RPRQVAMYLSK MT RS Sbjct: 350 LSDVLRAS-ERKITVEEIQRKVSDHYNIRLSDMIGPKRLRSYARPRQVAMYLSKKMTSRS 408 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIGRRFG RDHTTV+H V+++E++ D + +++ELL+R + E Sbjct: 409 LPEIGRRFGGRDHTTVMHGVKRIEELKIQDGQIAEDLELLRRALEE 454 >gi|209966320|ref|YP_002299235.1| chromosomal replication initiation protein [Rhodospirillum centenum SW] gi|209959786|gb|ACJ00423.1| chromosomal replication initiator protein DnaA [Rhodospirillum centenum SW] Length = 507 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 182/512 (35%), Positives = 278/512 (54%), Gaps = 54/512 (10%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + + + + V RLK++VG Y SW + L V + VPT F++ WI+ Y + Sbjct: 5 QGSLDQQWAKVRGRLKDEVGETAYRSWLKPLTVGDFDGGQVRIMVPTRFMRDWIRTHYAD 64 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I L+ E+ +Q VEI+V + + S + S I +++P S Sbjct: 65 RIRALWSGENPGVQSVEIVVATSQKSETRASEPPASEIRASEIRAPETRAPASGPAPARS 124 Query: 152 -----------------------------------------PVFGSPLDSRFVFSTFIEG 170 +PLD RF F F+ G Sbjct: 125 RARAVAEPALDGAAAAVAPSAPAYAEAEPAPVAAVGGAEEREDLSAPLDPRFTFENFVVG 184 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 N +A AA+ +A+ + V NPLF++ VGLGKTHL+ AIA ++ P+ RV+ Sbjct: 185 KPNELAFAAARRVADA-----SAVTFNPLFLYGGVGLGKTHLMHAIAWHIRRKDPSRRVI 239 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 YL+AE FM++F A+R + K+ R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 240 YLSAEKFMYQFIRALRFKDTMAFKEQFRSVDVLMIDDVQFISGKDSTQEEFFHTFNALVD 299 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 +QV+ +AD+ PS+LE ++ R+RSRL G+ + YE+R IL+ + + Sbjct: 300 QNRQVIISADKSPSDLEGMEERLRSRLGWGLVADIHPTTYELRLGILQQ-----KADQMG 354 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 I ++VL +A +T++ REL+GA N++V +T E E+L L+ ++ Sbjct: 355 AKIPQKVLEFLAHKITSNVRELEGALNRIVAHAELVGRAITLESTQEVLHDLLRAS-NRR 413 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + IE+IQ+ VA+H+NI +D+ S RR R V RPRQVAMYL+K +T RS PEIGR+FGDRD Sbjct: 414 VTIEEIQKKVAEHFNIRLSDMSSARRARAVARPRQVAMYLAKQLTQRSLPEIGRKFGDRD 473 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 HTTV+HAVRKVE++ TD ++VELL+R++ Sbjct: 474 HTTVMHAVRKVEELCGTDPAFAEDVELLRRML 505 >gi|167031024|ref|YP_001666255.1| chromosomal replication initiation protein [Pseudomonas putida GB-1] gi|189044600|sp|B0KEU9|DNAA_PSEPG RecName: Full=Chromosomal replication initiator protein DnaA gi|166857512|gb|ABY95919.1| chromosomal replication initiator protein DnaA [Pseudomonas putida GB-1] Length = 510 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 157/518 (30%), Positives = 254/518 (49%), Gaps = 65/518 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL------ 90 ++ L++++ + +W + L+ + + + + P F+ W+ +YL Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 62 Query: 91 -----ETITKLFQ---------------------------------EEHSRIQGVEILVR 112 I + VE + Sbjct: 63 LGENGSGIAPALSLLIGSRRSSAPRAAPNAPVSAAVAASLAQTQAHKAAPTPAAVEPIAV 122 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV-------FGSPLDSRFVFS 165 + A P + + PS + +P G+ V S L+ F F Sbjct: 123 AAAEPVLVDELAEPSSRDSFDAMAEPASAPASSGRAEQRTVQVEGALKHTSYLNRTFTFD 182 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ P Sbjct: 183 TFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNP 237 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 N +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF H Sbjct: 238 NAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTF 297 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + Sbjct: 298 NALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKK 352 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNT 403 + K+ + + +A+ + ++ REL+GA +++ F +T E+ E L L+ Sbjct: 353 ADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLAL 412 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG Sbjct: 413 Q-DKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDM 471 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 FGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 509 >gi|70733514|ref|YP_257153.1| chromosomal replication initiation protein [Pseudomonas fluorescens Pf-5] gi|123776101|sp|Q4KKT0|DNAA_PSEF5 RecName: Full=Chromosomal replication initiator protein DnaA gi|68347813|gb|AAY95419.1| chromosomal replication initiator protein DnaA [Pseudomonas fluorescens Pf-5] Length = 513 Score = 478 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 157/521 (30%), Positives = 259/521 (49%), Gaps = 68/521 (13%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRVLEL 62 Query: 97 F-QEEHSRIQGVEILVRS------------------------------------------ 113 + + + +L+ S Sbjct: 63 LDEHGNGMAPVLSLLIGSKRSSAPRAAPNAPLAAAASQALQAAAANAAPAAAPAPAPAPT 122 Query: 114 ------VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRF 162 A + + PS P+ S+ + +Q V G S L+ F Sbjct: 123 SAPAKKAAAQKAAEVSEEPSRDSFDPMAGASSQQAPVRAEQRTVQVEGALKHTSYLNRTF 182 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K Sbjct: 183 TFENFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLK 237 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 + PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF Sbjct: 238 KNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFF 297 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL Sbjct: 298 HTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL----- 352 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 + + + K+ + + +A+ + ++ REL+GA +++ F +T E+ E L L Sbjct: 353 MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDL 412 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEI Sbjct: 413 LALQ-DKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEI 471 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 GDVFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 512 >gi|315659995|ref|ZP_07912853.1| DNA-directed DNA replication initiator protein [Staphylococcus lugdunensis M23590] gi|315494896|gb|EFU83233.1| DNA-directed DNA replication initiator protein [Staphylococcus lugdunensis M23590] Length = 467 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 151/475 (31%), Positives = 256/475 (53%), Gaps = 20/475 (4%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 K + ++ + I+ V K + ++ + + + + +N + V F +W+ Sbjct: 8 KDGVFMSEQEIWEKVLEAAKLHISETSMNTFLKDSELYKIENNTAIVLVGYEFYASWLNQ 67 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +Y + +F+ S I G++I + + + + S ++ +K+ Sbjct: 68 KY----SAIFESIFSEIMGLDITPKFLTAEQLAEIVSEGDSASKKAPASSKAKA----ED 119 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + V ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGL Sbjct: 120 EHDAHVGTDQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGL 174 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI + + PN +V+Y ++E F F +IRD ++ RNID+LLIDD Sbjct: 175 GKTHLMHAIGHHVLSNNPNAKVLYTSSEKFTNEFIKSIRDGENEAFREKYRNIDVLLIDD 234 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+Q K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + Sbjct: 235 IQFIQNKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITP 294 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE R +IL+ + E+ L I E L ++A + ++ REL+GA +L+ Sbjct: 295 PDYETRMAILQK-----KMEEENLEIPMEALNYIANQIQSNIRELEGALTRLLAYSQLQG 349 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E+ E L ++ ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+A Sbjct: 350 RPITTELTAEALKDIIQVPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIA 409 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYLS+ +T S P+IG FG RDHTTV+HA K+ ++TD T K+EVE L++ I Sbjct: 410 MYLSRELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKTDSTFKQEVENLEKEI 464 >gi|269925124|ref|YP_003321747.1| chromosomal replication initiator protein DnaA [Thermobaculum terrenum ATCC BAA-798] gi|269788784|gb|ACZ40925.1| chromosomal replication initiator protein DnaA [Thermobaculum terrenum ATCC BAA-798] Length = 456 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 157/470 (33%), Positives = 252/470 (53%), Gaps = 19/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N + ++ V L+ ++ P + +W + S+ + +SVPT+F + I+ ++ Sbjct: 1 MNPKQVWQAVLGELEVRLNPAQFETWIKNTSLVSLDEDEAVISVPTSFAQMTIERKFEPE 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + R V +V + + + S+ S + +N + S Sbjct: 61 IRRSLSNILHRPVQVSFVVNGIISSNERSSRSNESSVEAPLLNAAQNTSTQFGAP----- 115 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +PL+ R+ F FI GSSNR+A A ++AE + Y NPLF++ VGLGKTHL Sbjct: 116 --NTPLNPRYTFENFIVGSSNRMAHAACMAVAEHPAEAY-----NPLFLYGGVGLGKTHL 168 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N ++K +P LRV+Y+++E F +AIR++ + R+ID+LLIDD+QF+ Sbjct: 169 LHAIGNHALKLKPYLRVLYVSSEQFTNDLINAIREHRTEEFRARYRSIDILLIDDIQFIA 228 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N L + KQ+V +DRPP + +L R+RSR +GG+ + L D E Sbjct: 229 GKESTQEEFFHTFNHLHGANKQIVMTSDRPPKAIATLQDRLRSRFEGGLMTEVNLPDLET 288 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ +++ ++VL +AR V ++ REL+GA N +V +T Sbjct: 289 RIAILRI-----KAENKGVDLPDDVLELIARKVQSNIRELEGALNSIVALARLTGEPITL 343 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A E L+ + +++ E I + VA +Y + L R R VV PRQVAMY+ + Sbjct: 344 ATAAEALNDTTMARKKRQITPERILQAVASYYGVDEKLLKGKTRAREVVIPRQVAMYIMR 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T +S EIG G RDHTTVLH + KVEK +E D L+++V ++ ++ Sbjct: 404 EDTDQSLSEIGAILGGRDHTTVLHGITKVEKDIEVDTKLRQDVMTVREML 453 >gi|258590834|emb|CBE67129.1| Chromosomal replication initiator protein dnaA [NC10 bacterium 'Dutch sediment'] Length = 452 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 250/471 (53%), Gaps = 29/471 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V + I+ + ++ +V + +WF+ L S+ + V + +P F K W ++ YL+ Sbjct: 8 VRADEIWKEALATIQGKVARQSFDNWFRPLALESLEGSCVTVRLPNQFFKEWFEDHYLDV 67 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + +F + V +++R + P P+ +++ I Sbjct: 68 LKSVFTDLM--FTSVNVILRVAEPVGQGEPDVRPEPAARRPVKRYRNEAAI--------- 116 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F F+ GSS++ A ++AE S Y NPLFI+ VGLGKTHL Sbjct: 117 -----LNPKYTFENFVVGSSSQFAHAGCLAVAEQLSKAY-----NPLFIYGGVGLGKTHL 166 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI + +KR L++ Y+++E F +AIR + ++ R++DLLLIDD+QF+ Sbjct: 167 LHAIGHLVLKRNARLKLSYVSSEKFTNDLINAIRFDSTGEFRNRYRSLDLLLIDDIQFIA 226 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N L DS+KQ+V ++D P E+ +L+ R+RSR + G+ + D E Sbjct: 227 GKERTQEEFFHTFNELYDSSKQIVISSDSLPREIPTLEERLRSRFEWGLIADIQPPDLET 286 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 + +I++ + + + + ++V + +A+ V ++ REL+G+ +LV S ++ Sbjct: 287 KAAIIRK-----KAQAEGVRLPDDVSLFIAKNVQSNIRELEGSLVRLVAYASMTGREISL 341 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L L N K + + IQ+ VA+ Y + DL S R VV PRQVAMYLS+ Sbjct: 342 ELAQETLKEL-NAERAKVITLTAIQQTVAEFYRVKVEDLKSKERNWGVVLPRQVAMYLSR 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P IG FG +DHTTV+H+ K+++ L TD ++++E L + I+ Sbjct: 401 TLTASSLPVIGEAFGGKDHTTVIHSCDKIKRRLTTDEAFRRQIESLSQAIT 451 >gi|220905644|ref|YP_002480955.1| chromosomal replication initiation protein [Cyanothece sp. PCC 7425] gi|254777899|sp|B8HRT5|DNAA_CYAP4 RecName: Full=Chromosomal replication initiator protein DnaA gi|219862255|gb|ACL42594.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7425] Length = 460 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 139/474 (29%), Positives = 243/474 (51%), Gaps = 25/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ ES++ + RL+ Q+ + +W + + + + + P F + WI+ YL Sbjct: 1 MDISLESLWNQILERLQLQLSRPTFETWIKTATAEAFTEDRLTIRTPNPFARNWIQKYYL 60 Query: 91 ETITKLFQEEHSRIQGVEILV-RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +TI + + V++++ PS E+T P+ N S +P ++ Sbjct: 61 KTIADVAHDILGHPVDVQLVIAEGEETPSSEETDLG---FAFPPLFRNPSPAPAPQRERM 117 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S L+ ++VFS ++ G +NR+A A ++AE NPLF+ VGLGK Sbjct: 118 ------SDLNPKYVFSRYVVGPNNRMAHAACLAVAESPGR-----EFNPLFLCGGVGLGK 166 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P+ ++ Y++ E F +AIR + + ++ R +D++L+DD+Q Sbjct: 167 THLMQAIGHYRLEICPDSKIFYVSTEQFTNDLIAAIRKDSMQSFREHYRAVDVMLVDDIQ 226 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ KQVV A+DRPPS++ L R+ SR G+ + D Sbjct: 227 FIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIADIQPPD 286 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL+ + E + + EV+ ++A + T++ REL+GA + V + I Sbjct: 287 LETRMAILQK-----KAEYENIRLPREVIEYIASSYTSNIRELEGALIRAVA---YISIS 338 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E ++ ++ K + + I V+ + I DL N R R + RQV MY Sbjct: 339 GLPMTVENIAPVLTPTTAKLEASPQTILLAVSDTFGIPIEDLKGNSRRREISVARQVGMY 398 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + T S P+IG FG +DHTTVL++ KV + TD + + + L I+ Sbjct: 399 LMRQHTGLSLPKIGEEFGGKDHTTVLYSCEKVADLQRTDPEIAQTLRQLSDRIN 452 >gi|254509739|ref|ZP_05121806.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae bacterium KLH11] gi|221533450|gb|EEE36438.1| chromosomal replication initiator protein DnaA [Rhodobacteraceae bacterium KLH11] Length = 460 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 164/468 (35%), Positives = 273/468 (58%), Gaps = 13/468 (2%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + + ++L VG + + +W + LKF + + SVPTNF+ ++ + + I Sbjct: 2 TQEKWGQLRNKLMKAVGKNNFTTWIEPLKFQELQDGVAVFSVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +Q + R+ A S T + + +P + S ++ + Sbjct: 62 YELNTSGESVQRLAF--RTAANSSARPTLTEETKPLSTP---DARPSVAETHSDSLEALQ 116 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 +PLD+RF F +F+ G N +A AA+ ++E V NPL ++ VGLGKTHL+ Sbjct: 117 AAPLDARFTFDSFVVGKPNELAHAAARRVSEG-----GPVTFNPLVLYGGVGLGKTHLMH 171 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA + P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ GK Sbjct: 172 AIAWELKTKSPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFIAGK 231 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R Sbjct: 232 DSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRL 291 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL+N++ P L I++ VL +A+ ++T+ R L+GA +L S + ++ Sbjct: 292 GILQNKVQQYSSTYPDLTISDGVLEFLAQRISTNVRVLEGALTRLFAFASLVGREIDMDL 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L+ ++ +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMYL K + Sbjct: 352 TQDCLADVLR-MSERKITVEEIQRKVSEYYNIRLSDIIGPKRLRSYARPRQVAMYLCKQL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGRRFG RDHTTV+H V+++E++ TD + ++VE+L+R + Sbjct: 411 TSRSLPEIGRRFGGRDHTTVMHGVKRIEELKLTDGQIAEDVEMLRRAL 458 >gi|332288919|ref|YP_004419771.1| chromosomal replication initiation protein [Gallibacterium anatis UMN179] gi|330431815|gb|AEC16874.1| chromosomal replication initiation protein [Gallibacterium anatis UMN179] Length = 455 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 151/468 (32%), Positives = 253/468 (54%), Gaps = 22/468 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S++ +L+++ +++W + L+ + + L P F++ W++++YL I + Sbjct: 7 SSLWQSCLLQLQDKTSEIDFSTWLRPLQA-DISDTTMVLYAPNRFVRDWVQDKYLSQIEE 65 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + Q V + VR P E N +++ + + + F Sbjct: 66 IVRFLTENPQFV-VRVREGTRPVREAIQVEE--------NASVAVTEANAEQAQTTHKFK 116 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F F++G SN++A AQ +AE NPLF++ GLGKTHLL A Sbjct: 117 TNLNPKYEFHNFVQGKSNQLARVVAQKVAEKIG----DEGYNPLFLYGGTGLGKTHLLHA 172 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N +K +PN RVVY+ +E F+ A++ K R++D LLIDD+QF GK Sbjct: 173 IGNGILKNKPNARVVYIHSERFVQELVKALKTETIEKFKKFYRSLDALLIDDIQFFAGKE 232 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H NSL + +Q++ +DR P E++ ++ R++SR G+SV + + E R + Sbjct: 233 GSQEEFFHTFNSLFEGGRQIILTSDRYPKEIDKIEERLKSRFNWGLSVAIEPPELETRVA 292 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + E+ + + EEV + + + T+ REL+GA N++ +F +T + Sbjct: 293 IL-----LKKAEESNIVLPEEVAFFIGQKLRTNVRELEGALNRVSANANFTGQPITIDFV 347 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L ++ + + +++IQR+VA+ Y I DL S + R+VVRPRQ+AM LSK +T Sbjct: 348 RETLKDMLAV-HDRSVTLDNIQRVVAERYRIKVADLKSKSKARSVVRPRQMAMALSKELT 406 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FGDRDHTTVLHA RK+ ++ ++D + ++ L R +S Sbjct: 407 NHSLPEIGRAFGDRDHTTVLHACRKIAELRDSDNNISEDYSNLIRTLS 454 >gi|289551834|ref|YP_003472738.1| Chromosomal replication initiator protein DnaA [Staphylococcus lugdunensis HKU09-01] gi|289181365|gb|ADC88610.1| Chromosomal replication initiator protein DnaA [Staphylococcus lugdunensis HKU09-01] Length = 455 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 254/470 (54%), Gaps = 20/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V K + ++ + + + + +N + V F +W+ +Y Sbjct: 1 MSEQEIWEKVLEAAKLHISETSMNTFLKDSELYKIENNTAIVLVGYEFYASWLNQKY--- 57 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + +F+ S I G++I + + + + S ++ +K+ + + Sbjct: 58 -SAIFESIFSEIMGLDITPKFLTAEQLAEIVSEGDSASKKAPASSKAKA----EDEHDAH 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 V ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 VGTDQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 167 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + PN +V+Y ++E F F +IRD ++ RNID+LLIDD+QF+Q Sbjct: 168 MHAIGHHVLSNNPNAKVLYTSSEKFTNEFIKSIRDGENEAFREKYRNIDVLLIDDIQFIQ 227 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 228 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 287 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L I E L ++A + ++ REL+GA +L+ +T Sbjct: 288 RMAILQK-----KMEEENLEIPMEALNYIANQIQSNIRELEGALTRLLAYSQLQGRPITT 342 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 343 ELTAEALKDIIQVPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ ++TD T K+EVE L++ I Sbjct: 403 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKTDSTFKQEVENLEKEI 452 >gi|20806543|ref|NP_621714.1| chromosomal replication initiation protein [Thermoanaerobacter tengcongensis MB4] gi|38257678|sp|Q8RDL6|DNAA_THETN RecName: Full=Chromosomal replication initiator protein DnaA gi|20514980|gb|AAM23318.1| ATPase involved in DNA replication initiation [Thermoanaerobacter tengcongensis MB4] Length = 443 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 251/473 (53%), Gaps = 34/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + I+ + +K+++ P Y +W +K + + + LS P F K I RY+ Sbjct: 1 MYGDYRQIWERIVEVIKSELTPTSYNTWLVHIKPLAFAEDTLFLSTPNTFTKNIINGRYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + +R ++IL K + I + + Sbjct: 61 NIIYDAASKVTNRFIEIKILSEDEEEYREIKES--------------------IERENSS 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKT Sbjct: 101 ESTLLSTLNPKYTFDTFVVGNSNKLAHAACLAVAQSPAKAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + K +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF Sbjct: 156 HLMHAIGHFINKNHAGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q EF H N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DY Sbjct: 216 IANKERTQEEFFHTFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDY 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +ILK + + LNI +EVL +VA + ++ REL+GA ++V + + Sbjct: 276 ETRVAILKK-----KAQSENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFATLTKSNI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+ L +V+ T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL Sbjct: 331 DLELTKHALKDIVSNK-TREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IG FG +DHTTV+HA K+ ++ D +L +++E LK+ I Sbjct: 390 ARELTDLSLPKIGEEFG-KDHTTVIHAYEKISNEIKQDESLARQIEELKKRIK 441 >gi|57239018|ref|YP_180154.1| chromosomal replication initiation protein [Ehrlichia ruminantium str. Welgevonden] gi|58578957|ref|YP_197169.1| chromosomal replication initiation protein [Ehrlichia ruminantium str. Welgevonden] gi|58617015|ref|YP_196214.1| chromosomal replication initiation protein [Ehrlichia ruminantium str. Gardel] gi|71151797|sp|Q5FHH8|DNAA_EHRRG RecName: Full=Chromosomal replication initiator protein DnaA gi|71151798|sp|Q5HBP0|DNAA_EHRRW RecName: Full=Chromosomal replication initiator protein DnaA gi|57161097|emb|CAH58004.1| chromosomal replication initiator protein DnaA [Ehrlichia ruminantium str. Welgevonden] gi|58416627|emb|CAI27740.1| Chromosomal replication initiator protein DNAA [Ehrlichia ruminantium str. Gardel] gi|58417583|emb|CAI26787.1| Chromosomal replication initiator protein DNAA [Ehrlichia ruminantium str. Welgevonden] Length = 464 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 182/493 (36%), Positives = 282/493 (57%), Gaps = 32/493 (6%) Query: 10 IQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH 69 + ++ E+ E P + L+ N I+ + SRL G +Y SW L + S Sbjct: 1 MNNDNTEVLENYP-----QDGLQSNSHIIWKGIQSRLHKFYGNAIYDSWLSVLLYVSTES 55 Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT 129 V LS PT F+K WI YL+ I K +Q+E I V+I V S P++ Sbjct: 56 GKVLLSAPTRFIKEWILVHYLDQILKYWQDEDQSICSVDICVVSNQDPNLLVDI------ 109 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 K + G + SPLD RF F F+ G N +A AA+ +AE +S Sbjct: 110 ----------KDRVDRGIKGNCDNVSSPLDPRFTFDNFVVGKPNELAFAAARRVAESNSP 159 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 + NPLF++ VGLGKTHL+ AIA IK ++ YL+AE FM+++ +A+R Sbjct: 160 ISGS---NPLFLYGGVGLGKTHLMHAIAWYIIKSCSKRKIAYLSAEKFMYQYVTALRSKD 216 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K+ R++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ + Sbjct: 217 IMLFKEQFRSVDILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGV 276 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + RI+SRL G+ + +E+R IL+ + E +NI +VL +A+ + ++ Sbjct: 277 EERIKSRLGWGLVADINETTFELRLGILQ-----LKVEKMGINIPNKVLEFLAKNIKSNI 331 Query: 369 RELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA N++V S +T + A ++LS L+ K + +E IQ+ VA+ +NI + Sbjct: 332 RELEGALNKVVAHSSLVGCSITLDTASDILSDLLRANH-KSVTLECIQKKVAEFFNIKVS 390 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+ S RR+RT+ RPRQ+AMYLSK +T +S PEIG+ FG RDH TV+HAV+++EK+++TD Sbjct: 391 DMYSTRRLRTLARPRQIAMYLSKKLTQKSLPEIGKSFGGRDHATVIHAVKQIEKLMDTDS 450 Query: 488 TLKKEVELLKRLI 500 L+ ++ LL R++ Sbjct: 451 KLRDDINLLNRML 463 >gi|304392441|ref|ZP_07374382.1| chromosomal replication initiator protein DnaA [Ahrensia sp. R2A130] gi|303295545|gb|EFL89904.1| chromosomal replication initiator protein DnaA [Ahrensia sp. R2A130] Length = 596 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 256/502 (50%), Positives = 350/502 (69%), Gaps = 41/502 (8%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ V ++L ++GP+ +ASWF R + ++ + + +SVPT FLK+WI+ Y + L+Q Sbjct: 96 WSRVQAQLMAKLGPESFASWFDRCRLETISKSQLTISVPTTFLKSWIRTHYAGILLTLWQ 155 Query: 99 EEHSRIQGVEILVRSVALPS-----------VEKTASSPSITKLSPINTN--ISKSPIIL 145 E+ I V+I+VRS + V +A S S +P+ +N + P Sbjct: 156 EQSEGILKVDIVVRSAVRSANAESGEAVDQLVNGSAPSASDATGAPMVSNGGMGTMPGAS 215 Query: 146 GKQTISPV------------------------FGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 ++ + + GSPLD F F+TF+EG+SNRVA AA+ Sbjct: 216 TQRNFATLPGEDVPAFGAGAAGRQAAEAGVGFAGSPLDPSFTFATFVEGASNRVACAAAR 275 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 S+AE D T R NPLF+HA+VGLGKTHLLQAIA + R ++++YLTAEYFMWRF Sbjct: 276 SVAEADG---TAARFNPLFLHANVGLGKTHLLQAIAWGASARNSGIKILYLTAEYFMWRF 332 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRP 301 ASAIRD AL+ K+SLR+IDLLLIDDMQFLQGK IQ EFCHLLN+L+DSAKQVV AADRP Sbjct: 333 ASAIRDQSALSFKESLRDIDLLLIDDMQFLQGKSIQQEFCHLLNALIDSAKQVVVAADRP 392 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P++LESLD R+RSRLQGGV++ +G D EMR ++L+ R +++EDP L I ++L +VA Sbjct: 393 PAQLESLDARVRSRLQGGVALEVGSPDIEMRKAMLELRYREARREDPNLAIPSDILDYVA 452 Query: 362 RTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 V +SGR+L+GAFNQL+ +H F+ + E +++LSHLV +GE +++R+EDIQ++V++ Sbjct: 453 TRVASSGRDLEGAFNQLLIQHKFSDKPVEIEQIEKMLSHLVQSGEQRRVRVEDIQKVVSR 512 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 HYN+S+NDLLSNRR R +VRPRQ+AMYLSK++TPRS PEIGRRFG RDHTTVLHAVRK+E Sbjct: 513 HYNVSKNDLLSNRRTRIIVRPRQIAMYLSKMLTPRSLPEIGRRFGGRDHTTVLHAVRKIE 572 Query: 481 KMLETDITLKKEVELLKRLISE 502 +L+ + L E+ELLKRLI+E Sbjct: 573 GLLKEETQLAHEIELLKRLIAE 594 >gi|303250480|ref|ZP_07336677.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650468|gb|EFL80627.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 447 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 152/468 (32%), Positives = 255/468 (54%), Gaps = 25/468 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I Sbjct: 2 SSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKFLAEIVD 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + S+ + + +R P+ + P++ + + S + F Sbjct: 61 LAR-FLSKNNDLAVSIRVGIKPA-----------EHRPVSPSTTSSNSKEEVPETNKNFR 108 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ F F++G SN++A AQ +A+ + NP ++ GLGKTHLL A Sbjct: 109 TGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGKTHLLHA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 165 VGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKE 224 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R + Sbjct: 225 ASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVA 284 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 285 IL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAV 339 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 340 REALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSLAKELT 398 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 399 NHSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 446 >gi|288939765|ref|YP_003442005.1| chromosomal replication initiator protein DnaA [Allochromatium vinosum DSM 180] gi|288895137|gb|ADC60973.1| chromosomal replication initiator protein DnaA [Allochromatium vinosum DSM 180] Length = 453 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 154/474 (32%), Positives = 256/474 (54%), Gaps = 25/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N +++ ++LK ++ + +W L+ V ++ L P F+ W + Y Sbjct: 1 MSGNAVALWEHCINQLKAELTSAEFNTWILPLQAR-VDGPLLRLLAPNRFVLDWTRKHYA 59 Query: 91 ETITKL-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + +L + + + V A S P+ K + + S ++ Sbjct: 60 DRLLELCARHSQGEVSEIHFEVGEFAR------ESGPAKGKGARAGSKAS----VIDSDL 109 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + + L++ F F TF+EG SN++A A+ IA Y NPLFI+ VGLGK Sbjct: 110 ATRRAAANLNADFNFDTFVEGKSNQLARAASIQIARNPGGTY-----NPLFIYGGVGLGK 164 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ A+ N + P+ RVVYL +E F+ A++ N + K + R+++ LLIDD+Q Sbjct: 165 THLMHAVGNVILASNPSARVVYLHSERFVAEMIKALQHNRIEDFKKTYRSVNALLIDDVQ 224 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F GK Q EF H N+LL+S +Q+V ++DR P E+ L+ R+RSR G++V + D Sbjct: 225 FFAGKERSQEEFFHTFNALLESGQQIVLSSDRFPKEVTGLEERLRSRFGWGLTVAIDPPD 284 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E +IL + + + E+V V R + ++ REL+GA +LV F Sbjct: 285 LETSVAILHC-----KATQLGVELPEDVAFFVGRRIRSNIRELEGALRRLVANAHFTGKP 339 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E A + L ++ + +++ +E+IQR VA +Y + +DLLS +R R++ RPRQ+AM Sbjct: 340 ITLEFAKQALRDVL-VAQDRQVSLENIQRTVADYYKLRTSDLLSAKRSRSLARPRQLAMA 398 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG+ FG RDHTTVLHA RK++ + E+D T++++ L R+++ Sbjct: 399 LAKELTKHSLPEIGQAFGGRDHTTVLHATRKIKSLRESDATIEEDYRNLLRMLT 452 >gi|77464920|ref|YP_354424.1| chromosomal replication initiation protein [Rhodobacter sphaeroides 2.4.1] gi|126460789|ref|YP_001041903.1| chromosomal replication initiation protein [Rhodobacter sphaeroides ATCC 17029] gi|332559819|ref|ZP_08414141.1| chromosomal replication initiation protein [Rhodobacter sphaeroides WS8N] gi|123771654|sp|Q3IY61|DNAA_RHOS4 RecName: Full=Chromosomal replication initiator protein DnaA gi|166214695|sp|A3PFL5|DNAA_RHOS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|77389338|gb|ABA80523.1| chromosomal replication initiator protein DnaA [Rhodobacter sphaeroides 2.4.1] gi|126102453|gb|ABN75131.1| chromosomal replication initiator protein DnaA [Rhodobacter sphaeroides ATCC 17029] gi|332277531|gb|EGJ22846.1| chromosomal replication initiation protein [Rhodobacter sphaeroides WS8N] Length = 455 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 172/458 (37%), Positives = 267/458 (58%), Gaps = 18/458 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + V L +VG + + +W + L+ + + VPT F W++ + + I Sbjct: 2 TNETWVQVREGLLKRVGRNNFVTWIEPLRLMGLDEGVARFEVPTLFFGDWVQRNFADHIR 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 E S ++ +E V + +++ ++ + + + Sbjct: 62 MRLTEAGSPVERLEFAVSNTPRAPLKEVKAAAPAASPARARPAPPEEDLR---------- 111 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+PLD+RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 112 GAPLDARFTFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMH 166 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA+ KRQP RV+YL+AE FM+RF A+R+ L K+ R++D+L++DD+QF+ GK Sbjct: 167 AIAHDLQKRQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGK 226 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L DYE+R Sbjct: 227 DSTQEEFFHTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRL 286 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL+ + +++ L I + VL +A +TT+ R L+GA +L S +T ++ Sbjct: 287 GILQQKADFYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDL 346 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L+ ++ +K+ IE+IQR VA+HYNI +D++ +R+RT+ RPRQVAMYL+K + Sbjct: 347 AQDCLADILRAS-DRKVTIEEIQRKVAEHYNIRLSDMIGPKRLRTIARPRQVAMYLAKQL 405 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 TPRS PEIGRRFG RDHTT++H VRK+E+++ TD L Sbjct: 406 TPRSLPEIGRRFGGRDHTTIMHGVRKIEELMATDSQLA 443 >gi|326789140|ref|YP_004306961.1| chromosomal replication initiator protein DnaA [Clostridium lentocellum DSM 5427] gi|326539904|gb|ADZ81763.1| chromosomal replication initiator protein DnaA [Clostridium lentocellum DSM 5427] Length = 446 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 268/473 (56%), Gaps = 31/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + + S ++ + + +WF+ + S+ N + +SV F K + RY+ Sbjct: 1 MSPLYQKQWEAILSIIEMETSSVSFNTWFKETELLSIEDNTLFISVKNEFTKEILNTRYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I + ++ ++ ++ E+T + K + + +P Sbjct: 61 ELIRNSALQVLNKDYNIKFML------PNEQTTTEQKAAKRNEQLQDPLNNP-------- 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ R+VF +F+ G+SNR+A AA +++E + Y NPLF++ VGLGKT Sbjct: 107 -----SNLNPRYVFDSFVVGNSNRMAHAAALAVSEAPARAY-----NPLFLYGGVGLGKT 156 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ +IA+ + + P+ +++Y ++E F ++IRD+ + ++ RNID+LLIDD+QF Sbjct: 157 HLMHSIAHYILDQNPSAKIIYASSEKFTNELINSIRDDKNESFRNKYRNIDVLLIDDIQF 216 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP E+E+L+ R+RSR + G+ + D Sbjct: 217 ITGKERTQEEFFHTFNALYEANKQIIISSDRPPKEIETLEERLRSRFEWGLIADIQSPDL 276 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + E L++ E+VL+ +A+TV ++ REL+GA N+++ S + Sbjct: 277 ETRIAILRK-----KAEIESLSVPEDVLLFIAKTVISNIRELEGALNRILAFSSLTNKPI 331 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A+E L L++ K + E IQ +VA ++++ +L S++R R + PRQ+AMYL Sbjct: 332 TVELANEALKDLISKDRPKIITAEYIQEIVATYFHLKPEELKSSKRTRNIAYPRQIAMYL 391 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IG +FG RDHTT++H K+ + ++TDI L + + L+ I+ Sbjct: 392 CRKLTDLSLPKIGEKFGGRDHTTIIHGFEKISREIQTDIELTQMLNELESKIT 444 >gi|289523933|ref|ZP_06440787.1| DNA replication initiator protein, ATPase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502589|gb|EFD23753.1| DNA replication initiator protein, ATPase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 446 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 148/468 (31%), Positives = 240/468 (51%), Gaps = 33/468 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + + S + ++ W + S+ + L VP F+K I++R+L Sbjct: 1 MDDKLNDTWKDILSIAREKLPQGATEIWLKTCLPISLDRGKLVLDVPNVFVKEQIQSRFL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + L + + VE++V + +K A + P Sbjct: 61 SGLKDLVADR-GIAREVELVVGTEVRDGEQKRAENALKQPPPPNPD-------------- 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ + F TF+ G SNR+A A+ ++AE Y NPLFI VGLGKT Sbjct: 106 ------GLNPNYYFDTFVVGKSNRLAHAASLAVAESPGVAY-----NPLFIWGGVGLGKT 154 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P RVVY ++E F SAI++N K RN+D+LLIDD+QF Sbjct: 155 HLMHAIGHYVLEHLPGARVVYASSEKFTNELISAIQNNKTQEFKAKFRNVDILLIDDIQF 214 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L K Q EF H NSL ++ +Q+V ++DRPP E++S++ R+ SR + G+ + D Sbjct: 215 LANKESTQEEFFHTFNSLHNAKRQIVLSSDRPPKEIQSIEQRLVSRFEWGLVTDIQPPDL 274 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + E +I E+V+ +A+ + ++ REL+GA N+++ + Sbjct: 275 ETRIAILQK-----KAEFRGYDIPEDVVYFLAQNIPSNIRELEGALNRIIACSQLNMEPI 329 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A E L ++ + + ++ IQ VA ++ DL S++R + RQVAMYL Sbjct: 330 TVENATEWLKDIIKMQQQGPISVDLIQDAVASYFGFDVEDLKSSKRTADIALARQVAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S+ +T S +IG F +DHTTVLHA RK+E+M++ D+ +KK V+ L Sbjct: 390 SRELTESSLQQIGIAFNKKDHTTVLHACRKIEEMMKEDLKMKKIVDNL 437 >gi|163738134|ref|ZP_02145550.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis BS107] gi|161388750|gb|EDQ13103.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis BS107] Length = 475 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 170/478 (35%), Positives = 271/478 (56%), Gaps = 18/478 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E + + RL VG + + +W + L+F V + + +VPTNF+ ++ + + I Sbjct: 2 TEDNWGRLRQRLLKTVGQNNFTTWIEPLEFTCVENGVAIFNVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQGVEILV--RSVALPSVEKTASSPSITKLSPINTNISKSPII-------- 144 +Q + V + A P+ A + L + ++ P Sbjct: 62 HELNMSGEPVQRLAFRVAANTAARPTAVDAAGAADDLPLDLDDEALTDLPRARTATGHGA 121 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 K + +PLD RF F +F+ G N +A AA+ +AE V NPL ++ Sbjct: 122 APKDQGETLQAAPLDPRFTFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLVLYGG 176 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AIA R P L V+YL+AE FM+RF A+R+ ++ K R++D+L+ Sbjct: 177 VGLGKTHLMHAIAWELTARNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLM 236 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ R+RSRLQ G+ V Sbjct: 237 VDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVD 296 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 L DYE+R IL++++A + P L I + VL +A ++T+ R L+GA +L S Sbjct: 297 LHPTDYELRLGILQSKVAQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFAS 356 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + E+ + L+ ++ +K+ +E+IQR V+++YNI +D++ +R+R+ RPR Sbjct: 357 LVGREIDMELTQDCLADVLRAS-ERKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPR 415 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 QVAMYL K +T RS PEIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R + Sbjct: 416 QVAMYLCKQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRRSL 473 >gi|299133399|ref|ZP_07026594.1| chromosomal replication initiator protein DnaA [Afipia sp. 1NLS2] gi|298593536|gb|EFI53736.1| chromosomal replication initiator protein DnaA [Afipia sp. 1NLS2] Length = 477 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 218/473 (46%), Positives = 306/473 (64%), Gaps = 10/473 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + +T V RL++ VG DVY+SWF R+ V VHLSVPT FLK+WI+ Y + + Sbjct: 9 QDRWTRVKGRLRSTVGEDVYSSWFARMDLERVGGESVHLSVPTRFLKSWIQTHYADRVLS 68 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-----PIILGKQTI 150 +Q E + V++ VR+ V + S+ + + + S + + Sbjct: 69 CWQAELPEVSRVDLTVRTPVRAPVVAKDAKASVEERLSEHEHRGPSELRSVATVPVSASH 128 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + GSPLD R F+TF+ G SN +AL AA+ +AE V NPL+IHA VGLGKT Sbjct: 129 EALGGSPLDPRLTFATFVGGRSNTLALAAARQVAE--GRRGDNVMFNPLYIHAGVGLGKT 186 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLLQA+ A + +V+YLTAE FM+ F +A++ AL K++LR ID+L+IDD+QF Sbjct: 187 HLLQAVTWAG--NSADRKVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVIDDLQF 244 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V +G E Sbjct: 245 LQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGALGEE 304 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 +R ILK+R++ ++ ++ VL ++A+ +T +GR+L+GA N+L+ +T Sbjct: 305 LRLEILKSRVSAARAHHASFDVPLPVLDYLAKAITHNGRDLEGAINRLLAHSKLNSTPVT 364 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A+ + L+ E ++++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVAMYL+ Sbjct: 365 LEMAEREVRDLIRPQEPRRVKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVAMYLA 424 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D+ L EVELLKR + E Sbjct: 425 KTLTLRSLPEIGRRFGGRDHTTVLHAVRKIESLVSKDVALSDEVELLKRQLQE 477 >gi|49482254|ref|YP_039478.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MRSA252] gi|221141516|ref|ZP_03566009.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|257424197|ref|ZP_05600626.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 55/2053] gi|257426874|ref|ZP_05603276.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 65-1322] gi|257429510|ref|ZP_05605897.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 68-397] gi|257432157|ref|ZP_05608520.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus E1410] gi|257435118|ref|ZP_05611169.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M876] gi|258423237|ref|ZP_05686129.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9635] gi|282907048|ref|ZP_06314896.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus Btn1260] gi|282910027|ref|ZP_06317835.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912275|ref|ZP_06320071.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WBG10049] gi|282912915|ref|ZP_06320707.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M899] gi|282922543|ref|ZP_06330233.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C101] gi|283959485|ref|ZP_06376926.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus A017934/97] gi|293497968|ref|ZP_06665822.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 58-424] gi|293511558|ref|ZP_06670252.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M809] gi|293550167|ref|ZP_06672839.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M1015] gi|295429298|ref|ZP_06821920.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589200|ref|ZP_06947841.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus MN8] gi|304379949|ref|ZP_07362678.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|56748687|sp|Q6GKU4|DNAA_STAAR RecName: Full=Chromosomal replication initiator protein DnaA gi|49240383|emb|CAG39029.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA252] gi|257273215|gb|EEV05317.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 55/2053] gi|257276505|gb|EEV07956.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 65-1322] gi|257279991|gb|EEV10578.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus 68-397] gi|257283036|gb|EEV13168.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus E1410] gi|257285714|gb|EEV15830.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M876] gi|257846566|gb|EEV70588.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9635] gi|269939527|emb|CBA12169.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus TW20] gi|282314764|gb|EFB45150.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C101] gi|282323015|gb|EFB53334.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M899] gi|282323971|gb|EFB54287.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WBG10049] gi|282326093|gb|EFB56398.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329947|gb|EFB59468.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus Btn1260] gi|283789077|gb|EFC27904.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus A017934/97] gi|290919214|gb|EFD96290.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus M1015] gi|291096899|gb|EFE27157.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 58-424] gi|291465516|gb|EFF08048.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus M809] gi|295127057|gb|EFG56701.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus EMRSA16] gi|297577711|gb|EFH96424.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus MN8] gi|302749912|gb|ADL64089.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341529|gb|EFM07439.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436858|gb|ADQ75929.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH60] gi|315195227|gb|EFU25615.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS00] gi|329312724|gb|AEB87137.1| Chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus T0131] Length = 453 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 251/470 (53%), Gaps = 22/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y+++ + + +++ + F W+ +Y E Sbjct: 1 MSEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + G E+ + + +++ + T P + Sbjct: 61 IQAILFD----VVGYEVKPHFITTEELANYSNNETATPKEATK------PSTETTEDNHV 110 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 111 LGREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 165 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + P+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 166 MHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQ 225 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 226 NKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ KL+I E L ++A + ++ REL+GA +L+ +T Sbjct: 286 RMAILQK-----KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITT 340 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ ++KK+ I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 341 ELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K L+ D K+EVE L++ I Sbjct: 401 ELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450 >gi|322513485|ref|ZP_08066595.1| ribosomal subunit interface protein [Actinobacillus ureae ATCC 25976] gi|322120704|gb|EFX92588.1| ribosomal subunit interface protein [Actinobacillus ureae ATCC 25976] Length = 447 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 153/468 (32%), Positives = 255/468 (54%), Gaps = 25/468 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I Sbjct: 2 SSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKFLAEIVD 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + S+ + + +R P+ K P + + + + Q + F Sbjct: 61 LAR-FLSKNDNLAVSIRVGIKPAEHK-----------PTSASTTSNNSKEEVQETNKNFR 108 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ F F++G SN++A AQ IA+ + NP ++ GLGKTHLL A Sbjct: 109 TGLNESLTFENFVQGKSNQLAKAVAQQIADNPGESH----CNPFSLYGGTGLGKTHLLHA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 165 VGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKE 224 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R + Sbjct: 225 ASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVA 284 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 285 IL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAV 339 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 340 REALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMALAKELT 398 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA + + ++ +TD ++++ L R +S Sbjct: 399 NHSLPEIGREFGGRDHTTVMHACKTINELRDTDSGIQEDYTNLTRKLS 446 >gi|85705685|ref|ZP_01036782.1| chromosomal replication initiation protein [Roseovarius sp. 217] gi|85669675|gb|EAQ24539.1| chromosomal replication initiation protein [Roseovarius sp. 217] Length = 450 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 171/468 (36%), Positives = 270/468 (57%), Gaps = 23/468 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + + +L+ VG + +W + L+F V + VPT+FL ++ + + I Sbjct: 2 TQEQWGQLKQKLQQSVGQSNFKNWIEPLEFARVDDGVATFHVPTSFLGNYVSQHFGDLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ V+ V + + K ++ + T S I++ + +P Sbjct: 62 YQMTTLAPHVRRVQFRVAANSANRPSKPVAAAAATPESQIDSIVPSAP------------ 109 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 LD RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 110 ---LDERFTFDSFVVGKPNELAHAAARRVAEC-----GPVTFNPLFLYGGVGLGKTHLMH 161 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA +P+L VVYL+AE FM+RF A+RD ++ K R++D+L++DD+QF+ GK Sbjct: 162 AIAWELKTTRPDLNVVYLSAEQFMYRFVQALRDRKMMDFKSVFRSVDVLMVDDVQFIAGK 221 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ+V +ADR P E+ +L+ RI+SRLQ G+ V L DYE+R Sbjct: 222 DSTQEEFFHTFNALVDQNKQIVISADRAPGEIANLEERIKSRLQCGLVVDLHPTDYELRL 281 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL++++ + + P L +++ VL +A +TT+ R L+GA +L S +T E+ Sbjct: 282 GILQSKVDRFRAQYPDLTLHDGVLEFLAHRITTNVRVLEGAMTRLFAFASLVRKPITLEL 341 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L+ ++ +K+ IE+IQR V+ HYNI +D++ +R R RPRQVAMYL K M Sbjct: 342 TQDCLADVLRAS-ERKVSIEEIQRKVSDHYNIRLSDMIGPKRTRCYARPRQVAMYLCKQM 400 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGRRFG RDHTT++H VR++E++ D + +++ELL+R + Sbjct: 401 TSRSLPEIGRRFGGRDHTTIMHGVRRIEELSLQDGQIAEDLELLRRTL 448 >gi|163743748|ref|ZP_02151122.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis 2.10] gi|161383009|gb|EDQ07404.1| chromosomal replication initiation protein [Phaeobacter gallaeciensis 2.10] Length = 475 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 170/478 (35%), Positives = 271/478 (56%), Gaps = 18/478 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E + + RL VG + + +W + L+F V + + +VPTNF+ ++ + + I Sbjct: 2 TEDNWGRLRQRLLKTVGQNNFTTWIEPLEFTCVENGVAIFNVPTNFMGNYVSQNFADLIL 61 Query: 95 KLFQEEHSRIQGVEILV--RSVALPSVEKTASSPSITKLSPINTNISKSP--------II 144 +Q + V + A P+ A + L + ++ P Sbjct: 62 HELNMSGEPVQRLAFRVAANTAARPTAVDAAGAADDLPLDLDDEALTDLPRARTATGHAA 121 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 K + +PLD RF F +F+ G N +A AA+ +AE V NPL ++ Sbjct: 122 APKDQGETLQAAPLDPRFTFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLVLYGG 176 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AIA R P L V+YL+AE FM+RF A+R+ ++ K R++D+L+ Sbjct: 177 VGLGKTHLMHAIAWELTARNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLM 236 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ GK Q EF H N+L+D KQ++ +ADR P E++ L+ R+RSRLQ G+ V Sbjct: 237 VDDVQFIAGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVD 296 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 L DYE+R IL++++A + P L I + VL +A ++T+ R L+GA +L S Sbjct: 297 LHPTDYELRLGILQSKVAQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFAS 356 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + E+ + L+ ++ +K+ +E+IQR V+++YNI +D++ +R+R+ RPR Sbjct: 357 LVGREIDMELTQDCLADVLRAS-ERKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPR 415 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 QVAMYL K +T RS PEIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R + Sbjct: 416 QVAMYLCKQLTSRSLPEIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRRSL 473 >gi|254472133|ref|ZP_05085533.1| chromosomal replication initiator protein DnaA [Pseudovibrio sp. JE062] gi|211958416|gb|EEA93616.1| chromosomal replication initiator protein DnaA [Pseudovibrio sp. JE062] Length = 489 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 226/484 (46%), Positives = 320/484 (66%), Gaps = 28/484 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V RL+ ++G DV+ SWF R+ + V LSVPT FLK WI++ Y E + L++ Sbjct: 12 WDRVKKRLRAELGEDVFTSWFARVDMEGHNNGTVRLSVPTRFLKQWIQSHYSERLMGLWK 71 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSP------SITKLSPINTN-------ISKSPIIL 145 E I +E+ VR P + + + PI N S +P ++ Sbjct: 72 NECDDIHKIELTVRGAVRPRPAAAKPAARPALGGKVADMRPIQVNDPVGLRAASPAPAMM 131 Query: 146 GKQTISPVFGSP-------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 G + S LD ++VF +F+EG SN +AL AA+ +A G V NP Sbjct: 132 GGRAGRSDLSSKDVLEGASLDPKYVFDSFVEGESNVLALAAAKQVA-----GGGVVTFNP 186 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L++HASVGLGKTHL+QAIAN + R RV+YLTAE+FM+RF +A++ A++ K++LR Sbjct: 187 LYLHASVGLGKTHLMQAIANQA--RMAGRRVLYLTAEHFMYRFVAALQAQSAMSFKETLR 244 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +IDLLLIDDMQFL GK +Q EFCH LN+L+D A+QVV AADR P+ELESLD R+RSRL G Sbjct: 245 SIDLLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVVVAADRAPAELESLDDRVRSRLAG 304 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ V + D+++R +I+++R+ Q+ P + + VL +VAR VT+SGR+L+GA N+L Sbjct: 305 GLVVNISEPDFQLRRAIIEDRMRAQQRSYPNFTVPDAVLDYVARNVTSSGRDLEGALNRL 364 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 V + +T E+A+ L L+ E ++++IEDIQR+V+KHYN+++ DLLS RR RT Sbjct: 365 VAHNQLTNSPVTLEMAEITLRDLIRAAEPRRVKIEDIQRVVSKHYNVTKADLLSARRTRT 424 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +VRPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRK+E++ + D L +E+ELLK Sbjct: 425 IVRPRQIAMYLAKMMTPRSLPEIGRRFGNRDHTTVLHAVRKIEELSKADNGLAQELELLK 484 Query: 498 RLIS 501 R++ Sbjct: 485 RMLD 488 >gi|15922991|ref|NP_370525.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu50] gi|15925706|ref|NP_373239.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus N315] gi|21281730|ref|NP_644816.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MW2] gi|49484913|ref|YP_042134.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57651109|ref|YP_184912.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus COL] gi|87161673|ref|YP_492723.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193824|ref|YP_498609.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266448|ref|YP_001245391.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus JH9] gi|150392481|ref|YP_001315156.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus JH1] gi|151220213|ref|YP_001331036.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus str. Newman] gi|156978332|ref|YP_001440591.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu3] gi|161508267|ref|YP_001573926.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253730400|ref|ZP_04864565.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733838|ref|ZP_04868003.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus TCH130] gi|254663935|ref|ZP_05143407.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793539|ref|ZP_05642518.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9781] gi|258411155|ref|ZP_05681434.1| replication initiation protein DnaA [Staphylococcus aureus A9763] gi|258420941|ref|ZP_05683875.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9719] gi|258438580|ref|ZP_05689803.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A9299] gi|258443964|ref|ZP_05692302.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A8115] gi|258446220|ref|ZP_05694380.1| replication initiation protein dnaA [Staphylococcus aureus A6300] gi|258449121|ref|ZP_05697227.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A6224] gi|258451366|ref|ZP_05699397.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5948] gi|258454401|ref|ZP_05702369.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5937] gi|262049433|ref|ZP_06022305.1| chromosomal replicator initiator protein [Staphylococcus aureus D30] gi|262051894|ref|ZP_06024109.1| chromosomal replicator initiator protein [Staphylococcus aureus 930918-3] gi|269201691|ref|YP_003280960.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus ED98] gi|282894280|ref|ZP_06302510.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8117] gi|282902632|ref|ZP_06310525.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus C160] gi|282918069|ref|ZP_06325819.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus D139] gi|282920720|ref|ZP_06328439.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9765] gi|282921291|ref|ZP_06329009.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C427] gi|282927751|ref|ZP_06335365.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A10102] gi|283767791|ref|ZP_06340706.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus H19] gi|284023038|ref|ZP_06377436.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus 132] gi|294849829|ref|ZP_06790569.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9754] gi|296275686|ref|ZP_06858193.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus MR1] gi|297209451|ref|ZP_06925849.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245900|ref|ZP_06929762.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8796] gi|300911475|ref|ZP_07128924.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH70] gi|56748673|sp|Q6GD89|DNAA_STAAS RecName: Full=Chromosomal replication initiator protein DnaA gi|56749818|sp|P68865|DNAA_STAAM RecName: Full=Chromosomal replication initiator protein DnaA gi|56749819|sp|P68866|DNAA_STAAN RecName: Full=Chromosomal replication initiator protein DnaA gi|56749820|sp|P68867|DNAA_STAAU RecName: Full=Chromosomal replication initiator protein DnaA gi|56749821|sp|P68868|DNAA_STAAW RecName: Full=Chromosomal replication initiator protein DnaA gi|71151805|sp|Q5HJZ5|DNAA_STAAC RecName: Full=Chromosomal replication initiator protein DnaA gi|123291872|sp|Q2G2H5|DNAA_STAA8 RecName: Full=Chromosomal replication initiator protein DnaA gi|123736033|sp|Q2FKQ5|DNAA_STAA3 RecName: Full=Chromosomal replication initiator protein DnaA gi|166215334|sp|A7WWM4|DNAA_STAA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|172048750|sp|A6QD41|DNAA_STAAE RecName: Full=Chromosomal replication initiator protein DnaA gi|189083281|sp|A6TXF1|DNAA_STAA2 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083282|sp|A5INP2|DNAA_STAA9 RecName: Full=Chromosomal replication initiator protein DnaA gi|189083283|sp|A8YYS4|DNAA_STAAT RecName: Full=Chromosomal replication initiator protein DnaA gi|1694677|dbj|BAA13755.1| DnaA [Staphylococcus aureus] gi|13699918|dbj|BAB41217.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus N315] gi|14245768|dbj|BAB56163.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus Mu50] gi|21203165|dbj|BAB93866.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus MW2] gi|49243356|emb|CAG41773.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MSSA476] gi|57285295|gb|AAW37389.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus COL] gi|58578564|dbj|BAD89355.1| DnaA [Staphylococcus aureus] gi|87127647|gb|ABD22161.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201382|gb|ABD29192.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739517|gb|ABQ47815.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JH9] gi|149944933|gb|ABR50869.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JH1] gi|150373013|dbj|BAF66273.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus str. Newman] gi|156720467|dbj|BAF76884.1| chromosomal replication initiator protein [Staphylococcus aureus subsp. aureus Mu3] gi|160367076|gb|ABX28047.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725880|gb|EES94609.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728141|gb|EES96870.1| replication initiation protein DnaA [Staphylococcus aureus subsp. aureus TCH130] gi|257787511|gb|EEV25851.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9781] gi|257840040|gb|EEV64505.1| replication initiation protein DnaA [Staphylococcus aureus A9763] gi|257843131|gb|EEV67546.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9719] gi|257848139|gb|EEV72131.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A9299] gi|257850848|gb|EEV74792.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A8115] gi|257855046|gb|EEV77989.1| replication initiation protein dnaA [Staphylococcus aureus A6300] gi|257857554|gb|EEV80449.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A6224] gi|257860896|gb|EEV83713.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5948] gi|257863495|gb|EEV86255.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus A5937] gi|259160221|gb|EEW45250.1| chromosomal replicator initiator protein [Staphylococcus aureus 930918-3] gi|259162430|gb|EEW47000.1| chromosomal replicator initiator protein [Staphylococcus aureus D30] gi|262073981|gb|ACY09954.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus ED98] gi|282315706|gb|EFB46090.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus C427] gi|282318354|gb|EFB48714.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus D139] gi|282590511|gb|EFB95589.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A10102] gi|282594128|gb|EFB99116.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9765] gi|282597091|gb|EFC02050.1| DNA replication initiator protein, ATPase [Staphylococcus aureus subsp. aureus C160] gi|282763325|gb|EFC03455.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8117] gi|283461670|gb|EFC08754.1| chromosomal replication initiator protein dnaA [Staphylococcus aureus subsp. aureus H19] gi|285815728|gb|ADC36215.1| Chromosomal replication initiator protein DnaA [Staphylococcus aureus 04-02981] gi|294823377|gb|EFG39806.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A9754] gi|296885912|gb|EFH24847.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177265|gb|EFH36518.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8796] gi|298693323|gb|ADI96545.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ED133] gi|300887654|gb|EFK82850.1| DNA-directed DNA replication initiator protein [Staphylococcus aureus subsp. aureus TCH70] gi|302331773|gb|ADL21966.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus JKD6159] gi|312828564|emb|CBX33406.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129544|gb|EFT85536.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS03] gi|315197919|gb|EFU28252.1| chromosomal replication initiation protein [Staphylococcus aureus subsp. aureus CGS01] gi|320141418|gb|EFW33261.1| replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA131] gi|320144401|gb|EFW36166.1| replication initiator protein DnaA [Staphylococcus aureus subsp. aureus MRSA177] gi|323439698|gb|EGA97416.1| chromosomal replication initiation protein [Staphylococcus aureus O11] gi|323443271|gb|EGB00888.1| chromosomal replication initiation protein [Staphylococcus aureus O46] gi|329725589|gb|EGG62068.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21172] gi|329731888|gb|EGG68248.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21189] gi|329732572|gb|EGG68922.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus 21193] Length = 453 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 252/470 (53%), Gaps = 22/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y+++ + + +++ + F W+ +Y E Sbjct: 1 MSEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + G E+ + + +++ + T + P + Sbjct: 61 IQAILFD----VVGYEVKPHFITTEELANYSNNETATPKE------TTKPSTETTEDNHV 110 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 111 LGREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 165 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + P+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 166 MHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQ 225 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 226 NKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ KL+I E L ++A + ++ REL+GA +L+ +T Sbjct: 286 RMAILQK-----KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITT 340 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ ++KK+ I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 341 ELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K L+ D K+EVE L++ I Sbjct: 401 ELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450 >gi|82749778|ref|YP_415519.1| chromosomal replication initiation protein [Staphylococcus aureus RF122] gi|123727433|sp|Q2YUP1|DNAA_STAAB RecName: Full=Chromosomal replication initiator protein DnaA gi|82655309|emb|CAI79689.1| chromosomal replicator initiator protein [Staphylococcus aureus RF122] Length = 453 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 252/470 (53%), Gaps = 22/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y+++ + + +++ + F W+ +Y E Sbjct: 1 MSEKEIWEKVLKIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + G E+ + + +++ + T + P + Sbjct: 61 IQAILFD----VVGYEVKPHFITTEELANYSNNETATPKE------TTKPSTETTEDNHV 110 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 111 LGREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 165 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + P+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 166 MHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQ 225 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 226 NKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ KL+I E L ++A + ++ REL+GA +L+ +T Sbjct: 286 RMAILQK-----KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITT 340 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ ++KK+ I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 341 ELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K L+ D K+EVE L++ I Sbjct: 401 ELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450 >gi|15603026|ref|NP_246098.1| chromosomal replication initiation protein [Pasteurella multocida subsp. multocida str. Pm70] gi|14194669|sp|Q9CLQ4|DNAA_PASMU RecName: Full=Chromosomal replication initiator protein DnaA gi|12721509|gb|AAK03245.1| DnaA [Pasteurella multocida subsp. multocida str. Pm70] Length = 451 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 154/473 (32%), Positives = 257/473 (54%), Gaps = 25/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + S++ +L++Q+ +++W + L+ + N + L F+K + YL Sbjct: 1 MKPDLSSLWQECLLQLQDQISLTDFSTWLRPLQADFSVQNTIVLYASNVFIKQKVDESYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +TK+ QE + V + V+ P P+ P + N ++ Sbjct: 61 AQLTKVAQELSGNAELV-VQVKVGVKPE-----PKPAQPSALPTHHNKEEN-------KP 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 V S L+ + VF F+EG SN++A AQ +A+ + NPLF++ GLGKT Sbjct: 108 QTVIRSYLNPKHVFENFVEGKSNQLARAVAQKVADNPGEPSS----NPLFLYGGTGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N + R N RV+Y+ A FM + +A+RDN K R++D LL+DD+QF Sbjct: 164 HLLHAIGNGILSRNTNARVLYIHANNFMQQMVNAVRDNKMDEFKKFYRSLDALLVDDIQF 223 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H+ N+L D+ +Q++ +DR P E+E L+ R++SR G++ + + Sbjct: 224 FAEKEKTQEEFFHIFNNLFDTGRQIILTSDRYPKEIEKLEERLKSRFGWGLTTAIEPPEL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + E+ + + EEV + + + T+ R+L+GA N++ F + Sbjct: 284 ETRVAIL-----LKKAEEKNIYLPEEVAFFIGQKLRTNVRDLEGALNRVSANAEFMGAAI 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L ++ K + +E+IQ++VA++Y I +DL R R++ RPRQ+AM L Sbjct: 339 TIDFVRETLKDMLALQ-DKLVTVENIQKVVAEYYRIKVSDLKGKSRSRSIARPRQLAMAL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 SK +T RS PEIG+ FGD+DHTTVLHA RK+ ++ E + +L+++ L R +S Sbjct: 398 SKELTNRSLPEIGKNFGDKDHTTVLHACRKIAELREQEHSLEEDWSNLIRTLS 450 >gi|104779317|ref|YP_605815.1| chromosomal replication initiation protein [Pseudomonas entomophila L48] gi|123255134|sp|Q1I2G4|DNAA_PSEE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|95108304|emb|CAK12998.1| Chromosomal replication initiator protein DnaA [Pseudomonas entomophila L48] Length = 508 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 157/516 (30%), Positives = 257/516 (49%), Gaps = 63/516 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL------ 90 ++ L++++ + +W + L+ + + + + P F+ W+ +YL Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 62 Query: 91 -----ETITKLFQEEHSR--------------------------------IQGVEILVRS 113 + + E +V Sbjct: 63 LGEHGNGLAPALSLLIGSRRSSAPRAAPNAPVSAAVAATMAQQTQQAAQVVVPSEPIVVP 122 Query: 114 VALP---SVEKTASSPSITKLSP---INTNISKSPIILGKQTISPVFGSPLDSRFVFSTF 167 VA P VE+ +S S +S + ++ + + S L+ F F TF Sbjct: 123 VAEPVLSEVEEPSSRDSFDSMSDSGSVPAASGRTEQRTVQVEGALKHTSYLNRTFTFETF 182 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 +EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN Sbjct: 183 VEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNA 237 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF H N+ Sbjct: 238 KVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNA 297 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + + Sbjct: 298 LLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKAD 352 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGE 405 K+ + + +A+ + ++ REL+GA +++ F +T E+ E L L+ Sbjct: 353 QAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ- 411 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG Sbjct: 412 DKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDMFG 471 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 GRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 507 >gi|300112746|ref|YP_003759321.1| chromosomal replication initiator protein DnaA [Nitrosococcus watsonii C-113] gi|299538683|gb|ADJ27000.1| chromosomal replication initiator protein DnaA [Nitrosococcus watsonii C-113] Length = 449 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 148/469 (31%), Positives = 244/469 (52%), Gaps = 24/469 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ + L+ ++ P + ++ + L+ + L P F+ W++N I Sbjct: 2 PSSLWKHCLNHLEGELDPQEFNTYIRPLQAIQ-QDTSLRLYAPNQFVIDWVQNCAENRIN 60 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L S +E + V S++ ++ ++ P + I + Sbjct: 61 TLLSHYSSG--RIEKALLEVGSCSLQPQTHIQTVE--------LTSKPTRSSSRVIDRIP 110 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ + F +F+EG SN++ A+ +AE Y NPLFI+ VGLGKTHL+ Sbjct: 111 ESRLNKNYTFDSFVEGKSNQLPRAASHQVAENPGSAY-----NPLFIYGGVGLGKTHLMH 165 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N P+ RVVYL +E F+ A++ N K R++D+LLIDD+QF GK Sbjct: 166 AVGNYIRSLNPSARVVYLHSEQFVAEMIKALQLNAINEFKTRYRSVDILLIDDIQFFAGK 225 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+LL+ Q++ DR P E+ L+ R+ SR G++V + + E R Sbjct: 226 ERSQEEFFYTFNTLLEVQHQIILTCDRFPKEVNGLEERLTSRFGWGLTVAVEPPELETRV 285 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL +++ + ++++V + R + ++ REL+GA +++ F +T E+ Sbjct: 286 AIL-----MNKASIENIILSDDVAFFLGRLIYSNVRELEGALRRVIAYSRFTHRPITMEL 340 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ T + K + IE+IQ+ VA++Y I +DL S RR RT+ RPRQ AM LSK + Sbjct: 341 TREALKDLL-TLQEKLVTIENIQKTVAEYYKIRVSDLSSKRRSRTIARPRQTAMLLSKEL 399 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S EIG+ FG RDHTTVLHA RK+ ++ TD + ++ + L + +S Sbjct: 400 TDHSLTEIGKFFGGRDHTTVLHACRKINELKGTDRRMAEDYQNLLKRLS 448 >gi|295406865|ref|ZP_06816669.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8819] gi|294968330|gb|EFG44355.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus A8819] Length = 453 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 251/470 (53%), Gaps = 22/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y+++ + + + + + F W+ +Y E Sbjct: 1 MSEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYMIKDGEAIVLSSIPFNANWLNQQYAEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + G E+ + + +++ + T + P + Sbjct: 61 IQAILFD----VVGYEVKPHFITTEELANYSNNETATPKE------TTKPSTETTEDNHV 110 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 111 LGREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 165 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + P+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 166 MHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQ 225 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 226 NKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ KL+I E L ++A + ++ REL+GA +L+ +T Sbjct: 286 RMAILQK-----KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITT 340 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ ++KK+ I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 341 ELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K L+ D K+EVE L++ I Sbjct: 401 ELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450 >gi|92115634|ref|YP_575363.1| chromosomal replication initiation protein [Nitrobacter hamburgensis X14] gi|122990363|sp|Q1QS94|DNAA_NITHX RecName: Full=Chromosomal replication initiator protein DnaA gi|91798528|gb|ABE60903.1| chromosomal replication initiator protein DnaA [Nitrobacter hamburgensis X14] Length = 475 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 216/481 (44%), Positives = 309/481 (64%), Gaps = 15/481 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++ V RL++ VG D+Y+SWF R+ SV V +SVPT FLK+WI+ Y Sbjct: 1 MSDIEQERWSRVKGRLRSTVGEDIYSSWFARMDLESVHGESVRMSVPTRFLKSWIQAHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP-----INTNISKSPIIL 145 E + +Q E + ++++VRS + + + + +T + Sbjct: 61 ERVLACWQAELPDVHRIDLMVRSAMRCAAPAKEAPAADPRRPEHGDGRASTELKMVATAP 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + GSPLD R F++F+ G SN +A AA+ +AE ++ NPL+IHA V Sbjct: 121 ASANHDALGGSPLDPRLTFASFVTGRSNTLAHAAARQVAE--GRRGDSIMFNPLYIHAGV 178 Query: 206 GLGKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLLQA+ NA +R +V+YLTAE FM+ F +A++ AL K++LR ID+ Sbjct: 179 GLGKTHLLQAVTWAGNAGTER----KVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDV 234 Query: 263 LLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V Sbjct: 235 LVIDDLQFLQGKSTQAEFCHTLNALIDAGRQVVVAADRPPSDLESLDDRVRSRLAGGLVV 294 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 +G E+R ILK+R+ +++ ++ E VL ++A+ +T +GR+L+GA N+L+ Sbjct: 295 EMGSLGEELRLGILKSRIEVARAHHASFSVPEPVLDYLAKAITHNGRDLEGAINRLLAHS 354 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 A +T E+A+ + L+ E ++++IEDIQR+VA+ YN+SR+DLLS+RR VVRP Sbjct: 355 KLNAQPVTLEMAEREVRDLIRPQEPRRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRP 414 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVELLKR + Sbjct: 415 RQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVSKDTTLSDEVELLKRQLQ 474 Query: 502 E 502 E Sbjct: 475 E 475 >gi|170719188|ref|YP_001746876.1| chromosomal replication initiation protein [Pseudomonas putida W619] gi|226735835|sp|B1J3Y2|DNAA_PSEPW RecName: Full=Chromosomal replication initiator protein DnaA gi|169757191|gb|ACA70507.1| chromosomal replication initiator protein DnaA [Pseudomonas putida W619] Length = 511 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 160/519 (30%), Positives = 259/519 (49%), Gaps = 66/519 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNI--------------- 138 E S I + I R + P A + S T+ Sbjct: 63 LGENGSGIAPALSLLIGSRRSSAPRAAPNAPVSAAMAASLAQTHAQPAAAPVMAVADPVS 122 Query: 139 ---------------------------SKSPIILGKQTISPV-------FGSPLDSRFVF 164 + +P+ G+ V S L+ F F Sbjct: 123 VPTAEPAQASDMAEASSRDSYDSMADSAPAPVAPGRTEQRNVQVEGALKHTSYLNRTFTF 182 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ Sbjct: 183 ETFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKN 237 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF H Sbjct: 238 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 297 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + Sbjct: 298 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MK 352 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVN 402 + + K+ + + +A+ + ++ REL+GA +++ F +T E+ E L L+ Sbjct: 353 KADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLA 412 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG Sbjct: 413 LQ-DKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGD 471 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 MFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 510 >gi|320331110|gb|EFW87081.1| chromosomal replication initiation protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330881908|gb|EGH16057.1| chromosomal replication initiation protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 511 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 158/519 (30%), Positives = 257/519 (49%), Gaps = 66/519 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTAS----------------------------- 124 E + + I + + P A Sbjct: 63 LGEHGQGMAPALSLLIGSKRSSAPRAAPNAPLAAVASQALSANSVSSVSSSAPAMATPAA 122 Query: 125 ---------------SPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVF 164 PS P+ S+ +Q V G S L+ F F Sbjct: 123 AVAVPAPVQNVAAHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTF 182 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ Sbjct: 183 ENFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKN 237 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF H Sbjct: 238 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 297 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + Sbjct: 298 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MK 352 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVN 402 + + K+++ + +A+ + ++ REL+GA +++ F +T E+ E L L+ Sbjct: 353 KADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLA 412 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG Sbjct: 413 LQ-DKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGD 471 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 VFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 510 >gi|303251822|ref|ZP_07337993.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649252|gb|EFL79437.1| chromosomal replication initiator protein [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 447 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 154/468 (32%), Positives = 255/468 (54%), Gaps = 25/468 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L I Sbjct: 2 SSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SFANGELTLYAQNQFVENWVKDKFLAEIVD 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + S+ + + +R P+ K+ S + + S S + F Sbjct: 61 LAR-FLSKNDNLAVSIRVGIKPAEHKSVSPSTTSNNSKEEAQES-----------NKNFR 108 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ F F++G SN++A AQ +A+ + NP ++ GLGKTHLL A Sbjct: 109 TGLNESLTFENFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGKTHLLHA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + N +KR P RVVY+ +E F+ A++ N N K R++D+L+IDD+QF K Sbjct: 165 VGNEILKRNPQARVVYIHSERFVQDMVKALKGNTIENFKKFYRSLDVLMIDDIQFFANKE 224 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + E R + Sbjct: 225 ASQEEFFHTFNSLFERNKQIILASDNFPKNIENIEERIKSRLSWGVSTAIEPPELETRVA 284 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL + + E+ + + EEV + + + T+ REL+GA N+++ +F +T + Sbjct: 285 IL-----MKKAEERGVELPEEVAFFIGQKLRTNVRELEGALNRVIAWRNFTKRQITIDAV 339 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + + IE+IQ+ VA++YNI +DL S R R+V RPRQ+AM L+K +T Sbjct: 340 REALKDLIAS-YDHLITIENIQKTVAEYYNIKMSDLKSKSRTRSVARPRQMAMSLAKELT 398 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA R + ++ +TD ++++ L R +S Sbjct: 399 NHSLPEIGREFGGRDHTTVMHACRTINELRDTDSGIQEDYTNLTRKLS 446 >gi|283469230|emb|CAQ48441.1| chromosomal replication initiator protein DnaA [Staphylococcus aureus subsp. aureus ST398] Length = 453 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 252/470 (53%), Gaps = 22/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y+++ + + +++ + F W+ +Y E Sbjct: 1 MSEKEIWEKVLEIAQEKLSAVSYSTFLKDTELYTIKDGEAIVLSSIPFNANWLNQQYAEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + G E+ + + +++ + T + P + Sbjct: 61 IQAILFD----VVGYEVKPHFITTEELANYSNNETATSKE------TTKPSTETTEDNHV 110 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 111 LGREQFNAHNTFDTFVIGPGNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 165 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + P+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 166 MHAIGHHVLDNNPDAKVIYTSSEKFTNEFIKSIRDNEGEAFRERYRNIDVLLIDDIQFIQ 225 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 226 NKVQTQEEFFYTFNELHQNNKQIVISSDRPPKEIAQLEDRLRSRFEWGLIVDITPPDYET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ KL+I E L ++A + ++ REL+GA +L+ +T Sbjct: 286 RMAILQK-----KIEEEKLDIPPEALNYIANQIQSNIRELEGALTRLLAYSQLLGKPITT 340 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ ++KK+ I+DIQ++V ++YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 341 ELTAEALKDIIQAPKSKKITIQDIQKIVGQYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K L+ D K+EVE L++ I Sbjct: 401 ELTDFSLPKIGEEFGGRDHTTVIHAHEKISKDLKEDPIFKQEVENLEKEI 450 >gi|254447382|ref|ZP_05060848.1| chromosomal replication initiator protein DnaA [gamma proteobacterium HTCC5015] gi|198262725|gb|EDY87004.1| chromosomal replication initiator protein DnaA [gamma proteobacterium HTCC5015] Length = 458 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 154/469 (32%), Positives = 256/469 (54%), Gaps = 15/469 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++++ S+L+N++ W + L V++ ++L P F++ W++ +Y I Sbjct: 2 TQAVWQSCLSQLENELTDHDMNVWIRPLHA-EVVNQTLNLMAPNPFVRDWVQEKYQTRIQ 60 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ + I + I + S + A P +T S + + + + P Sbjct: 61 EILNSLQTEITQLRISIGSFSAKPA--PARDPVVTTTSQSSQSSAAPAPKPAEPPSQPPV 118 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L++ F +F+EG SN++A AAQ +A+ GY NPLF++ VGLGKTHL+ Sbjct: 119 NHNLEAGHTFDSFVEGKSNQMAKAAAQHVAQAPGDGY----YNPLFLYGGVGLGKTHLMH 174 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ +A ++R P RVVYL +E F+ A++ N K R++D LLIDD+QF GK Sbjct: 175 AVGHAILERNPKARVVYLHSERFVGDMVKALQHNAIDEFKRLYRSVDALLIDDIQFFAGK 234 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ DR P E+ L+ R++SR G++V + + E R Sbjct: 235 ERSQEEFFHTFNALLERKQQMILTCDRYPKEVNGLEERLKSRFGWGLTVAIEPPELEERV 294 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +ILK S+ E +++ ++V +A+ V ++ REL+GA +++ F +T + Sbjct: 295 AILK-----SKAEIANVDMKDDVAFFIAQKVRSNVRELEGAMKRVIVNSQFTGREITVDF 349 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L + + + + +E+IQR VA +YNI DLLS R R++ RPRQ+AM L+ + Sbjct: 350 AREQLRDQIASQ-DRLVTLENIQRTVADYYNIRVADLLSKSRSRSITRPRQIAMALAAEL 408 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG FG RDHTTVLHA RK++ + D + ++ + L R++S Sbjct: 409 TNHSLPEIGNAFGGRDHTTVLHARRKIQALRAEDGRMNEDCQNLLRILS 457 >gi|237801664|ref|ZP_04590125.1| chromosomal replication initiation protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024523|gb|EGI04579.1| chromosomal replication initiation protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 511 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 157/519 (30%), Positives = 261/519 (50%), Gaps = 66/519 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 62 Query: 97 FQEEH-SRIQGVEILVRS---------------------------VALPSVEKTASSPSI 128 E + +L+ S ++ + S+P+ Sbjct: 63 LGEHGQGMAPSLSLLIGSKRSSAPRAAPNAPLAAAASQALSANSVSSVSASAPVTSAPAP 122 Query: 129 TKLSPINTNISKSPIILGKQTISPVFG------------------------SPLDSRFVF 164 +P N S + + P+ G S L+ F F Sbjct: 123 AMSTPAPVNNVASHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTF 182 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ Sbjct: 183 ENFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKN 237 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF H Sbjct: 238 PNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHT 297 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + Sbjct: 298 FNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MK 352 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVN 402 + + K+++ + +A+ + ++ REL+GA +++ F +T E+ E L L+ Sbjct: 353 KADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLA 412 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG Sbjct: 413 LQ-DKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGD 471 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 VFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 510 >gi|163745035|ref|ZP_02152395.1| chromosomal replication initiation protein [Oceanibulbus indolifex HEL-45] gi|161381853|gb|EDQ06262.1| chromosomal replication initiation protein [Oceanibulbus indolifex HEL-45] Length = 453 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 169/464 (36%), Positives = 268/464 (57%), Gaps = 20/464 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + RL VG + Y +W + L V IV L VPTNF ++ + + I Sbjct: 6 WGEIKERLLKTVGQNNYTTWIEPLVPGDVEDGIVTLKVPTNFFGNYVSQNFSDLILHEIN 65 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + + + + +K A + T + T S+ + +PL Sbjct: 66 AAGTDATRLNFALNQQPANAADKPAPAARQTTAAVKPTANSQ------------LSTAPL 113 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 114 DPRFSFDNFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHAIAR 168 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 +R+P++ V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Q Sbjct: 169 ELHERRPDMNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKDSTQ 228 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R IL+ Sbjct: 229 EEFFHTFNALVDQHKQIIISADRAPGEIKDLEDRVKSRLQCGLIVDLHPTDYELRLGILQ 288 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 +++ + +K P L + + VL +A +T++ R L+GA +L S + + + Sbjct: 289 SKVEVQRKTYPDLEVADGVLEFLAHRITSNVRVLEGALTRLFAFASLVGREIDMGLTQDC 348 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ ++ +K+ +E+IQR V+ HYNI +D++ +R+R+ RPRQVAMYL K MT RS Sbjct: 349 LADVLRAS-ERKISVEEIQRKVSDHYNIRLSDMIGPKRLRSYARPRQVAMYLCKQMTSRS 407 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PEIGRRFG RDHTTV+H VR++E++ +D + +++ELL+R + Sbjct: 408 LPEIGRRFGGRDHTTVMHGVRRIEELKVSDGQIAEDLELLRRAL 451 >gi|325102758|ref|YP_004272412.1| chromosomal replication initiator protein DnaA [Pedobacter saltans DSM 12145] gi|324971606|gb|ADY50590.1| chromosomal replication initiator protein DnaA [Pedobacter saltans DSM 12145] Length = 475 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 128/483 (26%), Positives = 241/483 (49%), Gaps = 22/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E C S++ +K+ + + +WF+ + + +++ + VP+ F W++ Y+ Sbjct: 1 MEKTCASVWNSCLQIIKDNIPAQSFKTWFEPISPLKLEGSVLTIQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + K + + +E +V + T + PS + P+ L K Sbjct: 61 GLLRKTIKNQLGDAGRLEYNIVVEKSSAQKPYTTNMPSSGNGAEGKNQSMPMPVALNKDI 120 Query: 150 ISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +P L+ + F FIEG NR+A +A ++A NPL Sbjct: 121 KNPFVIPGLKKLQVDPQLNPNYTFENFIEGDCNRLARSAGYAVAAKPG----GTSFNPLM 176 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHL QAI N P+ V+ ++ E F +F ++++N + + + + Sbjct: 177 IYGGVGLGKTHLAQAIGNEIKANMPDKLVICVSCEKFCQQFVDSLKNNTINDFVNFYQAM 236 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ SR + G Sbjct: 237 DVIIMDDVHNFAGKDKTQDIFFHIFNHLHQSGKQLILTSDKAPKDLAGLEERLLSRFKWG 296 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 +S L + D E R +ILK ++ + + E+V+ +VA + + REL+GA L+ Sbjct: 297 LSADLTVPDIETRMAILKKKMYQD-----GIELPEDVIEYVAHNIDNNVRELEGAMVSLL 351 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 + + + +A ++L + + +K++ +E IQ++V +++ + + + S R R + Sbjct: 352 AQSTLNKKEVDLALAKQMLKNFIKNS-SKEISMEYIQKLVCEYFEVPVDMVKSKTRKREI 410 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+ RQ++MYL+K T S IG FG RDH+TV++A + VE +++TD K V +++ Sbjct: 411 VQARQISMYLAKSHTKTSLKSIGAFFGGRDHSTVIYACQTVEDLIDTDKKFKTYVHDIQK 470 Query: 499 LIS 501 + Sbjct: 471 KLK 473 >gi|152977689|ref|YP_001343318.1| chromosomal replication initiation protein [Actinobacillus succinogenes 130Z] gi|171472899|sp|A6VK86|DNAA_ACTSZ RecName: Full=Chromosomal replication initiator protein DnaA gi|150839412|gb|ABR73383.1| chromosomal replication initiator protein DnaA [Actinobacillus succinogenes 130Z] Length = 455 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 155/473 (32%), Positives = 257/473 (54%), Gaps = 21/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N S++ +L++QV D + W + L+ N + + V F + W++N YL Sbjct: 1 MNRNTSSLWADCLLQLQDQVPADKFQMWLRPLQADISSPNQLTIYVQNFFSRQWVENNYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ITKL ++ + +V+ V E +P + N +++ + + Sbjct: 61 ADITKLARQLTGNP---DFVVKLV-----EGVKPAPKQNNIVTTKQN-AETAVDSEQHLQ 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S F + L+S +F F+EG SN++A +A NPLF++ GLGKT Sbjct: 112 SVEFKTGLNSNHLFENFVEGKSNQLARAVGIKVANNPG----DKTANPLFLYGGTGLGKT 167 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N + P RV+Y+ AE F+ + A + A N K RN+D LLIDD+QF Sbjct: 168 HLLHAVGNGILANNPKARVLYIHAERFVQEYVKATKLGAAENFKKFYRNLDALLIDDIQF 227 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L + KQ++ +DR P E+E ++ R++SR G+SV + + Sbjct: 228 FAGKELTQEEFFNTFNNLFEGEKQIILTSDRYPREIEKIEDRLKSRFSWGLSVAIEPPEL 287 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + E+ +N+ EEV + + + T REL+GA N+++ F + Sbjct: 288 ETRVAIL-----MKKAEERGVNLAEEVAFFIGQKLRTHVRELEGALNRVIANAEFTGKTI 342 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + + L ++ K + I++IQ++VA++Y I +DL S R R+V RPRQ+AM L Sbjct: 343 TIDFVRDTLKDMLALQ-DKLVTIDNIQKVVAEYYRIKVSDLNSKNRSRSVARPRQLAMAL 401 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T RSFPEIG+ FG +DHTTV++A K++++ ETD +++++ L R +S Sbjct: 402 AKELTNRSFPEIGKNFGGKDHTTVIYACDKIQELRETDSSIQEDWSNLIRTLS 454 >gi|261215132|ref|ZP_05929413.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 3 str. Tulya] gi|260916739|gb|EEX83600.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 3 str. Tulya] Length = 494 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 286/489 (58%), Positives = 361/489 (73%), Gaps = 24/489 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T Sbjct: 6 SEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLT 65 Query: 95 KLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L+QEE+ +I VE++VR V + E ++ + ++P + G Q+ Sbjct: 66 ELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQSFGGQS 125 Query: 150 IS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + V GSPLD R+ F TF++G+SNRVAL AA++IAE G + Sbjct: 126 LGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GSSA 182 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 VR NPLFIHASVGLGKTHLLQAIA A+ +RQ RVVYLTAEYFMWRFA+AIRDN AL+ Sbjct: 183 VRFNPLFIHASVGLGKTHLLQAIAAAAFQRQEKARVVYLTAEYFMWRFATAIRDNNALSF 242 Query: 254 KDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R+R Sbjct: 243 KEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVR 302 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL+G Sbjct: 303 SRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGRELEG 362 Query: 374 AFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 AFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLSNR Sbjct: 363 AFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLSNR 422 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L +E+ Sbjct: 423 RTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQEL 482 Query: 494 ELLKRLISE 502 ELLKRLI++ Sbjct: 483 ELLKRLIND 491 >gi|284097517|ref|ZP_06385596.1| Chromosomal replication initiator protein dnaA [Candidatus Poribacteria sp. WGA-A3] gi|283830972|gb|EFC35003.1| Chromosomal replication initiator protein dnaA [Candidatus Poribacteria sp. WGA-A3] Length = 451 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 158/467 (33%), Positives = 250/467 (53%), Gaps = 29/467 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ +++++G +V +WFQ + + VP F W+ Y E I + Sbjct: 11 IWENALGFIQSRMGDEVIETWFQPTTLGELNGTKATIVVPNKFFGEWLGRNYREVIGEAL 70 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 Q +G VE PS + + +P P Sbjct: 71 QAVRPGEEG---------KVDVEFIVGQPSTSVVIDQADKPQAAPQQTRVHRQLP----- 116 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 + ++ F F+ G+SN+ A A+ ++AE + Y NP FI+ VGLGKTHLL +I Sbjct: 117 -NPKYTFENFVVGASNQFAHAASLAVAESPARSY-----NPFFIYGGVGLGKTHLLNSIG 170 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +++ +LR+ Y+T E F ++IR + L+ RNID+LLIDD+QFL GK Sbjct: 171 NFVMQKG-DLRIAYVTTEEFTNEVINSIRYDKMSELRRRYRNIDMLLIDDIQFLAGKERT 229 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DR P E+ S++ R+RSR + G+ L D E R +IL Sbjct: 230 QEEFFHTFNALYEARKQIVLSSDRFPKEMPSMEERLRSRFEWGLIADLQQPDVETRIAIL 289 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 K + E+ + I ++V+ +A + ++ REL+GA +L + +T ++A Sbjct: 290 KK-----KSEEEGIAIGDDVIHLLAEGLKSNIRELEGALIRLGAYCTLTGQAITTDMAKT 344 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L L+ + K + ++D+Q +VA+ + + +L S RR +TVV PRQ+AMYL + +T Sbjct: 345 VLRDLLGSK-KKVITLDDVQDLVARRFQVKVAELKSKRRTKTVVHPRQIAMYLCRELTDA 403 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 SFPEIGR FG +DHTT++HA R++EK LE D TL+ VE LK IS+ Sbjct: 404 SFPEIGREFGGKDHTTIIHACRQIEKALEKDNTLRATVENLKDEISK 450 >gi|56695074|ref|YP_165421.1| chromosomal replication initiation protein [Ruegeria pomeroyi DSS-3] gi|71151804|sp|Q5LWV4|DNAA_SILPO RecName: Full=Chromosomal replication initiator protein DnaA gi|56676811|gb|AAV93477.1| chromosomal replication initiator protein DnaA [Ruegeria pomeroyi DSS-3] Length = 468 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 160/471 (33%), Positives = 270/471 (57%), Gaps = 11/471 (2%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + ++ +L VG + + +W + L+F ++ + + +VPTNF+ ++ + + I Sbjct: 2 TQEKWGLLCQKLLKTVGQNNFTTWIEPLEFQALENGVAVFTVPTNFMGNYVSQNFSDLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +Q + V + + + A + + + T + Sbjct: 62 YELNNAGEAVQRLAFRVAANSPMRPARAARPAAAAAAAAAAVEAPQVSAPRATDTSDVLD 121 Query: 155 G---SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 G +PLD RF F +F+ G N +A AA+ ++E V NPL ++ VGLGKTH Sbjct: 122 GLQAAPLDPRFTFDSFVVGKPNELAHAAARRVSEG-----GPVTFNPLVLYGGVGLGKTH 176 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AIA ++P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ Sbjct: 177 LMHAIAWELKVKRPELNVLYLSAEQFMYRFVQALRERRMMDFKHLFRSVDVLMVDDVQFI 236 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE Sbjct: 237 AGKDSTQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYE 296 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 +R IL+ ++ + + P L I + VL +A ++T+ R L+GA +L S + Sbjct: 297 LRLGILQTKVQMYRTTYPDLVIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREID 356 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ + L+ ++ +K+ +E+IQR V+ +YNI +D++ +R+R+ RPRQVAMYL Sbjct: 357 MELTQDCLADVLRAS-ERKITVEEIQRKVSDYYNIRLSDIIGPKRLRSYARPRQVAMYLC 415 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T RS PEIGRRFG RDHTTV+H V+++E++ TD + ++VE+L+R + Sbjct: 416 KQLTSRSLPEIGRRFGGRDHTTVMHGVKRIEELKLTDGQIAEDVEMLRRAL 466 >gi|34495456|ref|NP_899671.1| chromosomal replication iniciator protein DnaA [Chromobacterium violaceum ATCC 12472] gi|61212703|sp|Q7P259|DNAA_CHRVO RecName: Full=Chromosomal replication initiator protein DnaA gi|34101312|gb|AAQ57681.1| chromosomal replication iniciator protein DnaA [Chromobacterium violaceum ATCC 12472] Length = 467 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 236/475 (49%), Gaps = 18/475 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + +RL+ ++ + +W + L + I L P F+ +IK+R+L Sbjct: 2 TELDQFWPACLARLEAELSSQQFNTWIKPLTAEAGDEGIA-LFAPNRFIMQFIKDRFLPR 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I +L E + L A P+ +S K + + KQ Sbjct: 61 IEELAVELVGELPVELRLGAPTARPAAPVAGNSQPKAKEPAKAAASAPAAPSPAKQAAVK 120 Query: 153 VFG-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 G + L+ F F T + G N++A AA IAE NPLF++ VGL Sbjct: 121 AIGGSHESTRLNPSFTFDTLVTGKGNQLARAAAMQIAENPG----DQAYNPLFVYGGVGL 176 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI N ++ P ++ Y+ AE ++ A + K ++DLLLIDD Sbjct: 177 GKTHLIQAIGNHVFQKNPQAKIRYIHAERYVADIMRAYQHKAFDEFKRYYHSLDLLLIDD 236 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF + N+L++ KQV+ D P ++E ++ R+ SR G++V + Sbjct: 237 IQFFAGKNRTQEEFFYAFNALIEGGKQVIMTCDSYPKQIEGMEERLISRFSWGLTVEIQP 296 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + EMR +IL + + E + + V +A+ V ++ REL+GA ++V F + Sbjct: 297 PELEMRVAIL-----MKKAEADSIKLEHNVAFFIAQNVRSNVRELEGALKRVVAYARFTS 351 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E+ E L ++ G +++ ++ IQ+ VA++Y I +D+ S +R R + RPRQVA Sbjct: 352 QNITLELVKEALKDILAAG-NRQVTVDAIQKTVAEYYKIKLSDMHSKKRSRDIARPRQVA 410 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M L+K +T S P IG FG RDHTTVLHA + + +M +D + + E L ++ Sbjct: 411 MALAKELTQLSLPNIGDAFGGRDHTTVLHACKTITEMRASDADIAHDYEALLSML 465 >gi|150395230|ref|YP_001325697.1| chromosomal replication initiation protein [Sinorhizobium medicae WSM419] gi|150026745|gb|ABR58862.1| chromosomal replication initiator protein DnaA [Sinorhizobium medicae WSM419] Length = 481 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 298/484 (61%), Positives = 363/484 (75%), Gaps = 17/484 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYL+ Sbjct: 1 MRHDALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLDL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVAL---PSVEKTASSPSITKLS-----------PINTNI 138 IT L Q+E S I VEILVR+ P+ + S ++ + + + Sbjct: 61 ITSLVQQEDSEILKVEILVRTATRGHRPAAPEETVSAAVETVPVASVRRSATSPSVAISA 120 Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 S + +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR NP Sbjct: 121 STVAAAPARPHQTPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEA---GAGAVRFNP 177 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIH+SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+SLR Sbjct: 178 LFIHSSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLR 237 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 NIDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQG Sbjct: 238 NIDLLIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQG 297 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 GV++ + DYEMR +LK RL ++++D L I E+L HVAR VT SGREL+GAFNQL Sbjct: 298 GVAIEMEGPDYEMRLEMLKRRLEAARQDDATLEIPLEILSHVARNVTASGRELEGAFNQL 357 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +FR SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR R + Sbjct: 358 LFRRSFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRVVAKHYNVSRQELVSNRRTRVI 417 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKR Sbjct: 418 VKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDTKLSHEIELLKR 477 Query: 499 LISE 502 LI+E Sbjct: 478 LINE 481 >gi|61212583|sp|Q6G0V6|DNAA_BARQU RecName: Full=Chromosomal replication initiator protein DnaA Length = 494 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 280/474 (59%), Positives = 359/474 (75%), Gaps = 6/474 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 21 EEEGAAAFARVMAQLKAQVGIEAYTSWFGRLKLAEYSRNLVKLSVPTAFLRSWINNHYGS 80 Query: 92 TITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +T L+++E+S I VE++VR V+ V +T+++P + + ++ + K Sbjct: 81 LLTNLWKQENSAILRVEVIVRGMKRVSKGVVCRTSAAPVVLEGQTASSFVESYTEPSVKD 140 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + VFGSPLDSR+ F +F+EGSSNRVAL AA+SIAE + +R NPLFIHASVGLG Sbjct: 141 IEAGVFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHK---SALRFNPLFIHASVGLG 197 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQA+A A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDM Sbjct: 198 KTHLLQAVAAAALKRLMPARVIYLTAEYFMWRFATAIRDNAALSFKEQLRDIDLLIIDDM 257 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK IQ+EFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQGGV++ + + D Sbjct: 258 QFLQGKSIQNEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEVPD 317 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YEMR +L+ RL + Q++D + I++EVL ++A+TV SGR+++GAFNQL+FR SF L Sbjct: 318 YEMRLKMLRQRLKVVQQDDNMVVISDEVLQYIAKTVLGSGRDIEGAFNQLLFRQSFESDL 377 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E DELL HL +GE+K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQVAMYL Sbjct: 378 SLERIDELLGHLTRSGESKRIRIEEIQRAVARHYNVSKQDLLSNRRTRTVVKPRQVAMYL 437 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 438 AKMLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 491 >gi|254435499|ref|ZP_05049006.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] gi|207088610|gb|EDZ65882.1| chromosomal replication initiator protein DnaA [Nitrosococcus oceani AFC27] Length = 452 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 148/474 (31%), Positives = 243/474 (51%), Gaps = 26/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ S++ + L+ ++ P + ++ + L+ + L P F+ W++N Sbjct: 1 MQSVPSSLWKHCLNHLEGELDPQEFNTYIRPLQAIQ-QGTSLQLYAPNQFVIDWVQNCAE 59 Query: 91 ETITKLFQEEH-SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I L RI+ + V S +L + +K + + Sbjct: 60 SRINALLSHYSSGRIEKALLEVGSCSLQPQPHIQAVELTSKSA-----------RSSSRV 108 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + + S L+ + F +F+EG SN++ A+ +AE Y NPLFI+ VGLGK Sbjct: 109 VDRIPESRLNKNYTFDSFVEGKSNQLPRAASHQVAENPGSAY-----NPLFIYGGVGLGK 163 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ A+ N R P+ RVVYL +E F+ A++ N K R++D+LLIDD+Q Sbjct: 164 THLMHAVGNYIRSRNPSARVVYLHSEQFVAEMIKALQLNAINEFKTRYRSVDILLIDDIQ 223 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F GK Q EF + N+LL+ Q++ DR P E+ L+ R+ SR G++V + + Sbjct: 224 FFAGKERSQEEFFYTFNTLLEVQHQIILTCDRFPKEVNGLEERLTSRFGWGLTVAVEPPE 283 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PI 387 E R +IL +++ + ++++V + R + ++ REL+GA +++ F Sbjct: 284 LETRVAIL-----MNKASIENIILSDDVAFFLGRLIYSNIRELEGALRRVIAYSRFTHRP 338 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+ E L L+ T + K + IE+IQ+ VA++Y I +DL S RR R V RPRQ AM Sbjct: 339 ITMELTREALKDLL-TLQEKLVTIENIQKTVAEYYKIRVSDLSSKRRSRVVARPRQTAMS 397 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LSK +T S EIG+ FG RDHTTVLHA RK+ ++ D + ++ L + +S Sbjct: 398 LSKELTDHSLTEIGKFFGGRDHTTVLHACRKINELKSIDRRMAEDYHNLLKKLS 451 >gi|70725002|ref|YP_251916.1| chromosomal replication initiation protein [Staphylococcus haemolyticus JCSC1435] gi|123762366|sp|Q4LAL5|DNAA_STAHJ RecName: Full=Chromosomal replication initiator protein DnaA gi|68445726|dbj|BAE03310.1| chromosomal replication initiator protein [Staphylococcus haemolyticus JCSC1435] Length = 451 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 254/470 (54%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V ++++ + ++ + + + N+ + V F W+ + Y E Sbjct: 1 MSEQEIWKKVLEVAESEISKSTFNTFLKDTELKEIRDNVAIIFVIHEFYAEWLNSNYKEV 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + ++ + G E+ + E+ A ++ S + + I G + Sbjct: 61 IQTIMKD----VIGYEVEPKFFT---AEQLAELDETSRKSNTPSEPQRQIIEYGHEGTD- 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 ----QFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAQAY-----NPLFIYGGVGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + QPN +V+Y ++E F F +IR+N ++ RNID+LLIDD+QF+Q Sbjct: 164 MHAIGHHVLSNQPNAKVLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQFIQ 223 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 224 NKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 283 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L I E L ++A + ++ REL+GA +L+ +T Sbjct: 284 RMAILQK-----KIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGRPITT 338 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L ++ ++KK+ I+DIQ++V +YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 339 ELAAEALKDIIQVPKSKKITIQDIQKVVGHYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K ++ D K+EVE L++ I Sbjct: 399 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIAKDIKADTIFKQEVEDLEKEI 448 >gi|83950590|ref|ZP_00959323.1| chromosomal replication initiation protein [Roseovarius nubinhibens ISM] gi|83838489|gb|EAP77785.1| chromosomal replication initiation protein [Roseovarius nubinhibens ISM] Length = 468 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 174/479 (36%), Positives = 272/479 (56%), Gaps = 18/479 (3%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 VD+ + ++ + + LK VG + + +W L+ V + +VPT+F ++ Sbjct: 6 VDQGIM---TKNEWGQLKQELKKTVGSNNFTTWIAPLELDDVAGEVASFAVPTSFFGNYV 62 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 + + I + I+ V V PS +P P Sbjct: 63 AQTFGDQILYHLRAIDPSIRRVNFAV-----PSTASNDPQAPRRAPAPRPKAAPSEPAET 117 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 T P +PLD RF F TF+ G N +A AA+ +AE V NPLF++ V Sbjct: 118 MADTRIPT--APLDPRFKFDTFVVGKPNELAHAAAKRVAEG-----GPVTFNPLFLYGGV 170 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ AIA ++QP L VVYL+AE FM+RF A+R+ ++ K+ R++D+L++ Sbjct: 171 GLGKTHLMHAIAWELQEQQPGLNVVYLSAEQFMYRFVQALRERKMMDFKEMFRSVDVLMV 230 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H N+L+D KQ++ +AD P E+E+L+ RIRSRLQ G+ V L Sbjct: 231 DDVQFIAGKDSTQEEFFHTFNALVDQRKQIIISADCAPGEIENLEERIRSRLQCGLVVDL 290 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 +YE+R IL++++ + + P L + + VL +A +T + R L+GA +L S Sbjct: 291 HPTNYELRLGILQSKVEYYRGQYPDLMLADGVLEFLAHRITKNVRVLEGALTRLFAFASL 350 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T E+ + L+ ++ +++ IE+IQR V++HYNI +DL+ +R+R RPRQ Sbjct: 351 VGQEITLELTQDCLADVLRAS-ERQVTIEEIQRQVSEHYNIRLSDLVGPKRLRVYARPRQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +AM+L K MT RS PEIGRRFG RDHTTV+H VR++E++ D+ + +++ELL+R + E Sbjct: 410 MAMFLCKQMTSRSLPEIGRRFGGRDHTTVMHGVRRIEELSRKDVQIAEDIELLRRTLEE 468 >gi|223043484|ref|ZP_03613530.1| chromosomal replication initiator protein DnaA [Staphylococcus capitis SK14] gi|222443273|gb|EEE49372.1| chromosomal replication initiator protein DnaA [Staphylococcus capitis SK14] Length = 450 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 253/470 (53%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + +F W+ +Y E Sbjct: 1 MSEKEIWDKVLELAQERISHTSYHTFIKDTQLYSLKNDEAIILTSLSFNANWLNQKYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + + + S P + + GK+ Sbjct: 61 MQAIIYD----VIGYEVKPLFITEDELADYNNGASNEPQEPQTSTSTIEDNDGGKE---- 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 ----QFNIHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + QP+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 164 MHAIGHHVLSNQPSAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQ 223 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 224 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 283 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 284 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 338 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L ++ ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 339 ELAAEALKDIIQAPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ ++ D T K+E+E L++ I Sbjct: 399 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKADPTFKQEIENLEKEI 448 >gi|73661310|ref|YP_300091.1| chromosomal replication initiation protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123747926|sp|Q4A180|DNAA_STAS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|72493825|dbj|BAE17146.1| chromosomal replication initiator protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 455 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 252/470 (53%), Gaps = 20/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + + +V Y ++ + K + + + +F+ W+K Y E Sbjct: 1 MSEQEIWEKVLTLAQEKVSSASYQTFLKDTKLFKLQNEQAIVVTDDDFVANWLKMNYAEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I E G EI ++ +S + P +P + + Sbjct: 61 IKAALYEA----IGHEIAPVFYTEEELKSLHTSEQKEENQPEQPAKKYTPGV----DEAV 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + G ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 IGGEQFNTHNTFETFVIGPGNRFPHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 167 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + P+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 168 MHAIGHYVLDNNPDAKVIYTSSEKFTNEFIKSIRDNKTERFREKYRNIDVLLIDDIQFIQ 227 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 228 NKEQTQEEFFHTFNELHQANKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 287 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ ++ + LNI E L ++A + ++ REL+GA +++ +T Sbjct: 288 RMAILQKKIG-----EENLNIPTEALTYIANQIQSNIRELEGALTRVLAFSKLQGQPITT 342 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 343 ELTAEALKDIIQAPKSKKITIQDIQKIVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K ++ D T K+EVE L++ I Sbjct: 403 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIVKDIQNDPTFKQEVENLEKEI 452 >gi|314935201|ref|ZP_07842554.1| ATPase involved in DNA replication initiation [Staphylococcus hominis subsp. hominis C80] gi|313656536|gb|EFS20275.1| ATPase involved in DNA replication initiation [Staphylococcus hominis subsp. hominis C80] Length = 450 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 148/472 (31%), Positives = 253/472 (53%), Gaps = 25/472 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V ++++ + ++ + + + N+ ++ V F W+ + Y + Sbjct: 1 MSEQEIWKKVLEVAESEISKTTFNTFLKDTELKEIRDNVAYIFVIHEFYADWLNSNYKDV 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + ++ I G E+ + ++ + +L + S + S Sbjct: 61 IQTIIKD----IIGYEVDPKFY---------TAEQLAELDETSRKQSNTVKKTSAIDDSH 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 108 DDMDQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAQAY-----NPLFIYGGVGLGKTHL 162 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + +PN +V+Y ++E F F +IR+N ++ RNID+LLIDD+QF+Q Sbjct: 163 MHAIGHHVLSNKPNAKVLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQFIQ 222 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 223 NKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 282 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L I E L ++A + ++ REL+GA +L+ +T Sbjct: 283 RMAILQK-----KIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 337 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L ++ ++KK+ I+DIQ++V +YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 338 ELAAEALKDIIQVPKSKKISIQDIQKVVGHYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 397 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG FG RDHTTV+HA K+ ++ D K+EVE L++ I + Sbjct: 398 ELTDFSLPKIGEEFGGRDHTTVIHAHEKISNDIKADSIFKQEVEDLEKEIRK 449 >gi|329894830|ref|ZP_08270630.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC3088] gi|328922724|gb|EGG30058.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC3088] Length = 483 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 144/474 (30%), Positives = 252/474 (53%), Gaps = 23/474 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + +RL Q+ + +W L+ H+ P F+K ++K ++ + I ++ + Sbjct: 21 WQDCLARLSEQIPDQQFRTWIAPLQLEQ-QDATCHILAPNRFIKDFVKEKFNDRIQEVLR 79 Query: 99 EEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP----- 152 E + ++ + + ++ S+ + +P + + K+ T + Sbjct: 80 SELGDQRLDLQFGIANQGSTPRAFVRTTTSVKQDAPNLSVVGKTDAPTTMTTRNTGVQVE 139 Query: 153 ---VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L + F +F+EG SN++AL AA+ + + Y NPLFI+ VGLGK Sbjct: 140 GGLSHQNNLVEHYSFESFVEGKSNQLALAAARQVKDNPGFAY-----NPLFIYGGVGLGK 194 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ A+ NA + PN ++YL +E F+ A++ N + K R++D LLIDD+Q Sbjct: 195 THLMHAVGNALRQDNPNANIIYLHSERFVADMVKALQLNAISDFKRYYRSVDALLIDDIQ 254 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F GK Q EF H N+LL+ Q++ DR P E++ L+ R++SR G++V + + Sbjct: 255 FFAGKERSQEEFFHTFNALLEGGHQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPE 314 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL + + + + E+ +A+ + ++ REL+GA +++ F Sbjct: 315 LETRVAIL-----MKKAHQIGVFLPEDAAFFIAQRIRSNVRELEGALKRVIASAHFHQKP 369 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + + + L L+ K++ +++IQR+VA++Y I DL+S RR R+V RPRQVAM Sbjct: 370 IDIAMVKDSLKDLLALQ-DKQVSLDNIQRIVAEYYRIKVADLMSKRRSRSVARPRQVAMA 428 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA RK+E++ T+ ++++V+ L R ++ Sbjct: 429 LAKELTNHSLPEIGDSFGGRDHTTVLHACRKIEELKGTNNDIREDVKNLLRALT 482 >gi|297184288|gb|ADI20405.1| ATPase involved in DNA replication initiation [uncultured alpha proteobacterium EB080_L43F08] Length = 451 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 171/466 (36%), Positives = 271/466 (58%), Gaps = 22/466 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 I+ I+ L+ VG + +W L+ S+ + + PT F+ W+ Y ++I Sbjct: 4 EIWPIIKLALRKTVGEAAFTNWINPLELTSINASKANFVTPTKFIGDWVDRNYGDSIKFE 63 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F ++ ++ + V K++P + +K K + + G+ Sbjct: 64 FAKQGLDVERLVFSVNME--------------PKITPAKKSSTKPEAKNTKTGSTDLPGA 109 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LD R+ F F+ G N +A AA+ +AE D V NPLF+H VGLGKTHL+ AI Sbjct: 110 SLDPRYTFDNFVVGKPNELAHAAARRVAEGD-----DVSFNPLFLHGGVGLGKTHLMHAI 164 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 A KR PN RV+YL+AE FM+RF A+R ++ K+ R++D+L++DD+QF+ GK Sbjct: 165 AWEIKKRDPNARVLYLSAEQFMYRFVQALRFKDTISFKEMFRSVDVLMVDDVQFIAGKSS 224 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQV+ + DR P ++E L+ RI+SRLQ G+ V + DYE+R I Sbjct: 225 TQEEFFHTFNALIDQNKQVIISGDRAPVDMEQLEDRIKSRLQWGLVVDVHPTDYELRLGI 284 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L+++ + + + ++ VL +A+ ++++ R L+GA +L S +T E+A Sbjct: 285 LQSKQESQARYNSTVEVSPGVLEFMAQRISSNVRVLEGALTRLYAFGSLVGRPVTLEMAQ 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E LS ++ +K+ I++I R V HY ++ D+LS RR R++ RPRQVAMYLSK +T Sbjct: 345 ESLSDILR-ATDRKVTIDEIIRKVTDHYGVNLTDMLSARRTRSIARPRQVAMYLSKKLTS 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIGRRFG RDHTTV+HAV+K+E++ D + K++E+L+R++ Sbjct: 404 KSLPEIGRRFGKRDHTTVIHAVKKIEELQSIDNQIAKDIEVLRRML 449 >gi|314934960|ref|ZP_07842319.1| DNA replication initiator protein, ATPase [Staphylococcus caprae C87] gi|313652890|gb|EFS16653.1| DNA replication initiator protein, ATPase [Staphylococcus caprae C87] Length = 451 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 253/470 (53%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + +F W+ +Y E Sbjct: 1 MSEKEIWDKVLELAQERISHTSYHTFIKDTQLYSLKNDEAIILTSLSFNANWLNQKYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + + + S P + + GK+ Sbjct: 61 MQAIIYD----VIGYEVKPLFITEDELADYNNGASNEPQEPQTSTFTIEDNDGGKE---- 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 ----QFNIHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + QP+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 164 MHAIGHHVLSNQPSAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQ 223 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 224 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 283 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 284 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 338 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L ++ ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 339 ELAAEALKDIIQAPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ ++ D T K+E+E L++ I Sbjct: 399 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKADPTFKQEIENLEKEI 448 >gi|77917619|ref|YP_355434.1| chromosomal replication initiation protein [Pelobacter carbinolicus DSM 2380] gi|77543702|gb|ABA87264.1| chromosomal replication initiator protein DnaA [Pelobacter carbinolicus DSM 2380] Length = 452 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 155/471 (32%), Positives = 257/471 (54%), Gaps = 22/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ E I+ LK + P +A+W + ++F V +++V L VP F+ W+K Y T Sbjct: 1 MSMEKIWQKTLDSLKQSLTPQHFATWIKPIRFIGVHNDVVELEVPNRFVLDWLKKHYYGT 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + + V S A + +P P Sbjct: 61 IQECWSNTAGAAYKISLTVASKTAKEPVPAAETSPPATPAPKPKQEKTPPRANAY----- 115 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+SR+ F TF+ GSSN+ S A NPLFI+ VGLGKTHL Sbjct: 116 ----NLNSRYTFETFVLGSSNQF-----ASAAATAVANNPATTYNPLFIYGGVGLGKTHL 166 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ NA +K+ P ++V Y T+E FM +++R + R++D+LLIDD+QF+ Sbjct: 167 VNAVGNAILKKNPEMKVCYYTSEKFMNELINSLRYAKMDEFRTKFRSMDVLLIDDVQFIA 226 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L DS KQ+V +D+ P E+ L+ R+RSR + G+ + D E Sbjct: 227 GKERTQEEFFHTFNALYDSHKQIVVTSDKFPKEIPGLEERLRSRFEWGLIADIQAPDMET 286 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 + +ILK + E +++ +EV + +A V+++ REL+G ++ S A +T Sbjct: 287 KQAILK-----MKAEQNGIDLPKEVALFLASAVSSNIRELEGYLVRIGAYASLTATPITL 341 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E+L ++ + +++ +E+IQ++VA HY+I +DL S +R++ +V PRQ+AMYLS+ Sbjct: 342 SMAQEVLKDIL-VEKRRELTVEEIQKLVATHYSIKISDLKSAKRMKALVLPRQIAMYLSR 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S+PEIG RFG +DH+T++HA++K+EK ++ D L+ + LK+ +S Sbjct: 401 QLTSCSYPEIGERFGGKDHSTIIHAIKKIEKAMDEDYQLRSVINNLKKELS 451 >gi|146337176|ref|YP_001202224.1| chromosomal replication initiation protein [Bradyrhizobium sp. ORS278] gi|166201862|sp|A4YJ98|DNAA_BRASO RecName: Full=Chromosomal replication initiator protein DnaA gi|146189982|emb|CAL73974.1| Chromosomal replication initiator protein dnaA [Bradyrhizobium sp. ORS278] Length = 476 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 215/482 (44%), Positives = 311/482 (64%), Gaps = 16/482 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + ++ V RL++ VG DVY SWF R+ +V VHLSVPT FLK+WI+ Y Sbjct: 1 MTNSEQERWSRVKGRLRSTVGEDVYTSWFARMDLEAVQDESVHLSVPTRFLKSWIQAHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNI-----SKSPIIL 145 E + +Q E + +++ VR+ + + ++ P ++ +++P++ Sbjct: 61 ERVLSAWQAEMPEVHRIDLSVRTAMRCATPAKEAPAAVEARRPERSDAKPVSDARAPVMT 120 Query: 146 GKQTISPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 G SPLD R F++F+ G +N +A AA+ +A D V NPL+IHA Sbjct: 121 PVAASHDALGGSPLDPRLTFASFVVGRANTLAHAAARQVA--DGRRGDPVMFNPLYIHAG 178 Query: 205 VGLGKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 VGLGKTHLLQA+ NA +R +V+YLTAE FM+ F +A++ AL K++LR ID Sbjct: 179 VGLGKTHLLQAVTWAGNAGGER----KVLYLTAEKFMYGFVAALKSQTALAFKEALRGID 234 Query: 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 +L+IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ Sbjct: 235 VLVIDDLQFLQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLV 294 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + ++R ILK+R+A ++ ++ E VL ++AR++T +GR+L+GA N+L+ Sbjct: 295 VEMATLGEDLRLGILKSRVAAARAHHASFDVPEAVLDYLARSITHNGRDLEGAINRLLAH 354 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +T ++A+ + LV E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVR Sbjct: 355 SKLNNQPVTLDMAEREVRDLVRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVR 414 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D+ L EVE LKR + Sbjct: 415 PRQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVGKDVALNDEVESLKRQL 474 Query: 501 SE 502 + Sbjct: 475 QD 476 >gi|33152000|ref|NP_873353.1| chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] gi|61212729|sp|Q7VMW1|DNAA_HAEDU RecName: Full=Chromosomal replication initiator protein DnaA gi|33148222|gb|AAP95742.1| chromosomal replication initiator protein [Haemophilus ducreyi 35000HP] Length = 448 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 154/473 (32%), Positives = 260/473 (54%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L Sbjct: 1 MEQIVSSLWSDCLNHLQTKVSPIDYSTWLRPLQA-SFANEELTLYAQNPFVENWVKDKFL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I L + S+ + ++I +R P+ + N + S + Q Sbjct: 60 TEIIDLAR-FLSKNEQLKITIRVGNKPTEQ--------------NLSASSTNKEELTQDT 104 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F + L+ R F F++G SN++A AQ +A+ + NP ++ GLGKT Sbjct: 105 VHKFKTGLNGRLTFDNFVQGKSNQLAKAVAQQVADNPGESH----CNPFSLYGGTGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N +KR P RVVY+ +E F+ A+++N N K R++D+L+IDD+QF Sbjct: 161 HLLHAVGNEILKRNPQARVVYIHSERFVQDMVKALKNNTIENFKKFYRSLDVLMIDDIQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H NSL + KQ++ A+D P +E+++ RI+SRL GVS + + Sbjct: 221 FAKKEASQEEFFHTFNSLFERNKQIILASDHFPKNIENIEERIKSRLNWGVSTAIEPPEL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL + + E+ + + EEV ++ + + T+ REL+GA N++ +F + Sbjct: 281 ETRVAIL-----MKKAEERNVELPEEVAFYLGQKLRTNVRELEGAINRVSAWCNFTKRQI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L L+ + + IE+IQ++VA++YNI DL S R R++ RPRQ+AM L Sbjct: 336 TIDAVRETLKDLIAS-YDHLVTIENIQKIVAEYYNIKMADLKSKSRTRSIARPRQMAMAL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S PEIGR FG RDHTTV+HA + + ++ +TD +++++ L R +S Sbjct: 395 AKELTSHSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLS 447 >gi|148251627|ref|YP_001236212.1| chromosomal replication initiation protein [Bradyrhizobium sp. BTAi1] gi|166201861|sp|A5E812|DNAA_BRASB RecName: Full=Chromosomal replication initiator protein DnaA gi|146403800|gb|ABQ32306.1| Chromosomal replication initiator protein [Bradyrhizobium sp. BTAi1] Length = 475 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 219/481 (45%), Positives = 310/481 (64%), Gaps = 15/481 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + ++ V RL++ VG DVY SWF R+ +V VHLSVPT FLK+WI+ Y Sbjct: 1 MTNSEQERWSRVKGRLRSTVGEDVYTSWFARMDLEAVQDESVHLSVPTRFLKSWIQAHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSV---ALPSVEKT-ASSPSITKLSPINTNISKSPIILG 146 E + +Q E + +++ VR+ A P+ E A + +++P++ Sbjct: 61 ERVLSCWQAEMPEVHRIDLSVRTAMRCATPAKEAPVAVEARRAERGDAKPADTRAPVMTP 120 Query: 147 KQTISPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 G SPLD R F++F+ G +N +A AA+ +A D V NPL+IHA V Sbjct: 121 VAASHDALGGSPLDPRLTFASFVVGRANTLAHAAARQVA--DGRRGDPVMFNPLYIHAGV 178 Query: 206 GLGKTHLLQAI---ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLLQA+ NA +R +V+YLTAE FM+ F +A++ AL K++LR ID+ Sbjct: 179 GLGKTHLLQAVTWAGNAGGER----KVLYLTAEKFMYGFVAALKSQTALAFKEALRGIDV 234 Query: 263 LLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+IDD+QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V Sbjct: 235 LVIDDLQFLQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVV 294 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + ++R ILK+R+A ++ ++ E VL ++AR++T +GR+L+GA N+L+ Sbjct: 295 EMATLGEDLRLGILKSRVAAARAHHASFDVPEPVLDYLARSITHNGRDLEGAINRLLAHS 354 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +T ++A+ + LV E K+++IEDIQR+VA+ YN+SR+DLLS+RR VVRP Sbjct: 355 KLNNQPVTLDMAEREVRDLVRPQEPKRIKIEDIQRVVARQYNVSRSDLLSSRRTANVVRP 414 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAMYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ D TL EVE LKR + Sbjct: 415 RQVAMYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVGKDTTLNDEVEALKRQLQ 474 Query: 502 E 502 + Sbjct: 475 D 475 >gi|323705848|ref|ZP_08117420.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium xylanolyticum LX-11] gi|323534844|gb|EGB24623.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium xylanolyticum LX-11] Length = 443 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 265/473 (56%), Gaps = 34/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +C S++ + +LK+++ Y +W LK ++L +I+ LS F K I RYL Sbjct: 1 MYDDCYSLWDAIFEKLKSELTTTSYTTWLVHLKPVALLDDILVLSAVNVFTKNIINGRYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + I +I ++ V+ E ++ S + +S Sbjct: 61 NVIYDAAK----SITNKKIEIKIVSEDEEEYKKIKETVQFKSEKDKTVSNM--------- 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKT Sbjct: 108 -------LNPKYTFDTFVVGNSNKLAHAACLAVAQSPARAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ N +++Y+T+E F ++I+D+ ++ R++D+LLIDD+QF Sbjct: 156 HLMHAIGHFVLEHNSNTKIMYVTSETFTNELVNSIKDDKNEEFRNKYRSMDILLIDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 216 IAKKERTQEEFFHTFNTLYEANKQIIVSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDF 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK + ++ LNI ++VL+++A + ++ REL+GA ++V S + Sbjct: 276 ETRIAILKK-----KAQNENLNIPDDVLVYIAEKIPSNIRELEGALIRIVAFSSLTKANI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A + L +++ +K+ ++ IQ V K+YNI+ D +S +R +T+ PRQ+AMYL Sbjct: 331 DLDLAKDALKDIISNK-VRKITVKLIQEEVCKYYNINYEDFISKKRTKTIAFPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ MT S P+IG FG +DHTTV+HA K+ ++ D +L K++E LK+ I Sbjct: 390 AREMTDLSLPKIGEEFG-KDHTTVIHAYDKISNDIKEDESLNKQIEELKKRIK 441 >gi|228474142|ref|ZP_04058879.1| chromosomal replication initiator protein DnaA [Staphylococcus hominis SK119] gi|228271837|gb|EEK13174.1| chromosomal replication initiator protein DnaA [Staphylococcus hominis SK119] Length = 450 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 148/472 (31%), Positives = 253/472 (53%), Gaps = 25/472 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V ++++ + ++ + + + N+ ++ V F W+ + Y + Sbjct: 1 MSEQEIWKKVLEVAESEISKTTFNTFLKDTELKEIRDNVAYIFVIHEFYADWLNSNYKDV 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + ++ I G E+ + ++ + +L + S + S Sbjct: 61 IQTIMKD----IIGYEVDPKFY---------TAEQLAELDETSRKQSNTVKKTSAIDDSH 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 108 DDMDQFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAQAY-----NPLFIYGGVGLGKTHL 162 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + +PN +V+Y ++E F F +IR+N ++ RNID+LLIDD+QF+Q Sbjct: 163 MHAIGHHVLSNKPNAKVLYTSSEKFTNDFIKSIRNNEPEAFREKYRNIDVLLIDDIQFIQ 222 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 223 NKEQTQEEFFHTFNELHQNKKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 282 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L I E L ++A + ++ REL+GA +L+ +T Sbjct: 283 RMAILQK-----KIEEENLEIPAEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 337 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L ++ ++KK+ I+DIQ++V +YN+ D + +R +++ PRQ+AMYLS+ Sbjct: 338 ELAAEALKDIIQVPKSKKISIQDIQKVVGHYYNVRIEDFSAKKRTKSIAYPRQIAMYLSR 397 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG FG RDHTTV+HA K+ ++ D K+EVE L++ I + Sbjct: 398 ELTDFSLPKIGEEFGGRDHTTVIHAHEKISNDIKADSIFKQEVEDLEKEIRK 449 >gi|91774357|ref|YP_544113.1| chromosomal replication initiator protein DnaA [Methylobacillus flagellatus KT] gi|123380248|sp|Q1GXK1|DNAA_METFK RecName: Full=Chromosomal replication initiator protein DnaA gi|91708344|gb|ABE48272.1| chromosomal replication initiator protein DnaA [Methylobacillus flagellatus KT] Length = 470 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 147/481 (30%), Positives = 255/481 (53%), Gaps = 26/481 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ +++ R + ++ + +W + L+F + + L P F++ W+K+R+L+ I+ Sbjct: 2 ENFWSLCLGRFEEELSAQQFNTWIKPLRFEA-REGTLRLLAPNRFVQQWVKDRFLQKISA 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSV-----EKTASSPSITKLSPIN-------TNISKSPI 143 L +E S +E+ + + S K A +P + +K Sbjct: 61 LAEEVLSTPVQIELALYDASEKSPITLAKPKPAEAPGAAAKIEAEISKVTKTVSPAKPAS 120 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 K+ + S L+ F F F+ G +N++A AA +AE Y NPLFI+ Sbjct: 121 AAPKKPKTLTETSGLNPAFRFDNFVTGKANQLARAAAIQVAENPGTAY-----NPLFIYG 175 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTH+LQAI N ++P+ ++ YL AE ++ A K ++DLL Sbjct: 176 GVGLGKTHVLQAIGNHLKSQRPDAKIRYLHAERYVSDVVKAYEHKAFDEFKRQYHSLDLL 235 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF K Q EF + NSL+++ KQ++ D P E+ +D R+R+R G++V Sbjct: 236 LIDDIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPKEIADVDERLRTRFSWGLTV 295 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + + EMR +IL + + E ++ ++E+V +A+ V +S REL+GA N+++ Sbjct: 296 AVEPPELEMRVAIL-----LKKAEAARVTLDEDVAFFIAKQVRSSVRELEGALNRIIAMA 350 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 +F + +A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R RP Sbjct: 351 NFTGHAIDVSLAKEALKDLIAVR-GRQITIENIQKTVADYYKIKVAEMYSKKRSRNFARP 409 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AM L++ +T SFPEIG FG R HTTV+HA ++E++ + D + +++ +L ++I Sbjct: 410 RQIAMTLARELTNHSFPEIGEAFGGRHHTTVMHACDEIEQLRQNDQNVARDIAVLIQVIR 469 Query: 502 E 502 + Sbjct: 470 D 470 >gi|311748263|ref|ZP_07722048.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1] gi|126576758|gb|EAZ81006.1| DNA replication initiator protein, ATPase [Algoriphagus sp. PR1] Length = 472 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 135/476 (28%), Positives = 248/476 (52%), Gaps = 17/476 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +++ ++ V +++WF+ + + + + VP+ F W+++ Y+ Sbjct: 1 MSSEASAVWNECLRVIEQHVNEQSFSTWFKPINPVKLEGTNLTIQVPSQFFFEWLEDNYV 60 Query: 91 ETITKLFQEEHSRIQGVEILV-----RSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 + + + + +E V S P V + K + ++P + Sbjct: 61 QVLKLAIKTTLGQGGRLEYAVVVDRGNSSNQPYVVSYPQGNNSKKGAAAPVEEQRTPFEM 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S L+ + FS +IEG NR+A +A ++A NPL ++ V Sbjct: 121 KSLDAEALTKSNLNPNYTFSAYIEGDCNRLARSAGFAVATKPG----ITSFNPLMVYGGV 176 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAI N + V+Y+++E F+ +F +I+D + + +D+L+I Sbjct: 177 GLGKTHLVQAIGNEIKNGPEDKFVLYVSSEKFVNQFMDSIKDGNVKSFTNFYMQVDVLII 236 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL GK Q F H+ N L + KQ++ +D PP +L+ L+ R+ SR + G++ L Sbjct: 237 DDIQFLAGKDRTQEMFFHIFNHLHQNKKQIIMTSDCPPRDLKGLEERLLSRFKWGLTADL 296 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + D+E R +I++ + + + I ++V+ ++A TV T+ REL+G L+ S Sbjct: 297 QMPDFETRVAIIRR-----KMQSEGIFIPDDVVEYLAYTVDTNVRELEGILISLIAHASL 351 Query: 385 API-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + ++ E+A ++ +++ ET ++ I+ IQ+ V+++Y I+ +DL + R + +V RQ Sbjct: 352 SRVEISLELAKTVMKNIIKDIET-EVGIDYIQKTVSEYYGIALDDLKAKTRKKEIVVARQ 410 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 VAMY SK T S IG FG RDH+TV+HAV+ V ++ETD + + V LK+ Sbjct: 411 VAMYFSKEFTNHSLKSIGYHFGGRDHSTVIHAVQTVNDLMETDSSFRNAVNELKKK 466 >gi|152989598|ref|YP_001345397.1| chromosomal replication initiation protein [Pseudomonas aeruginosa PA7] gi|150964756|gb|ABR86781.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa PA7] Length = 512 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 160/522 (30%), Positives = 258/522 (49%), Gaps = 69/522 (13%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY------- 89 ++ L++++ + +W + L+ + + + + P F+ W+ +Y Sbjct: 2 ELWQQCVDLLRDELPSQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 60 Query: 90 --------LETITKLFQEEHSRIQGVEIL-------------------VRSVALPSVEKT 122 L ++ L + SR I+ A P V Sbjct: 61 LGERGEGQLPALSLLIGSKRSRTPRAAIVPSQSHVAPPPPVAPPPAPVQPVSAAPVVVPR 120 Query: 123 ASSPSITKLSPINTNI--SKSPIILGKQTISPVFGSP-------------------LDSR 161 P + +S + + ++ P I P +P L+ Sbjct: 121 EELPPVAAVSSVTADSYEAEEPSIDPLAVAMPAGAAPAIRTERNVQVEGALKHTSYLNRT 180 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N + Sbjct: 181 FTFENFVEGKSNQLARAAAWQVADNLKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLL 235 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF Sbjct: 236 KKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEF 295 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL Sbjct: 296 FHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL---- 351 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSH 399 + + E K+ + + +A+ + ++ REL+GA +++ F +T E+ E L Sbjct: 352 -MKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKD 410 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L+ K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PE Sbjct: 411 LLALQ-DKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPE 469 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 470 IGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 511 >gi|319399914|gb|EFV88160.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis FRI909] Length = 451 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 255/470 (54%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + V F +W+ RY E Sbjct: 1 MSEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ ++ + + + P N S GK+ Sbjct: 61 MQAIIYD----VIGYEVKPHFISEDELASYNNVNTQEVQEPQVQNSSIDDKTWGKE---- 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 ----QFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+Q Sbjct: 164 MHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQ 223 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 224 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 283 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 284 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 338 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 339 ELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 399 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448 >gi|242372602|ref|ZP_04818176.1| replication initiation protein DnaA [Staphylococcus epidermidis M23864:W1] gi|242349657|gb|EES41258.1| replication initiation protein DnaA [Staphylococcus epidermidis M23864:W1] Length = 455 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 253/470 (53%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + F +W+ RY E Sbjct: 5 MSEKEIWDKVLDIAQERISHTSYHTFIKDTQLYSLKNDEAIILTSLPFNASWLNQRYSEI 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ + + ++ S P + GK+ Sbjct: 65 MQAIIYD----VIGYEVKPHFITEDELANYSNVTSHATQEPQTAAPTHDENNWGKE---- 116 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 117 ----QFNTHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 167 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + QPN +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 168 MHAIGHHVLSNQPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRNIDVLLIDDIQFIQ 227 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 228 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 287 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 288 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 342 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 343 ELTAEALKDIIQAPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ ++ D T K+EVE L++ I Sbjct: 403 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIVNDIKADPTFKQEVENLEKEI 452 >gi|209523410|ref|ZP_03271965.1| chromosomal replication initiator protein DnaA [Arthrospira maxima CS-328] gi|209496152|gb|EDZ96452.1| chromosomal replication initiator protein DnaA [Arthrospira maxima CS-328] Length = 453 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 142/473 (30%), Positives = 239/473 (50%), Gaps = 26/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ E ++ V RL+ Q+G Y +W + S+ ++ + + F W++ Y Sbjct: 1 MDISLEQLWNRVLERLQLQLGEPTYNTWIKTAIATSLENDCLVIRTANPFACNWLQKHYR 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I + Q+ +EI + + + SP + S S + + + Sbjct: 61 EIIADVVQDIMGD--RLEICITTGTGELMTTNDHSPRV----------SSSGLDTPGEVV 108 Query: 151 SPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S V P L+S+++FS F+ GS +R+A A+ ++AE NPLF+ VGLGK Sbjct: 109 SSVHKPPNLNSKYMFSQFVVGSGSRLAHAASLAVAESPGR-----EFNPLFLCGGVGLGK 163 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P RV Y++ E F +AIR + + +D R D+LL+DD+Q Sbjct: 164 THLMQAIGHYRLEINPYARVFYVSTEKFTNDLIAAIRRDSMQSFRDHYRAADVLLVDDIQ 223 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ KQ+V A+DRPPS++ L R+ SR G+ + D Sbjct: 224 FIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPSKISGLQDRLCSRFSMGLVADIQPPD 283 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL+ + E + + V+ ++A T++ REL+GA + V S + + Sbjct: 284 LETRMAILQK-----KAEYENMRLPPAVIEYIATNYTSNIRELEGALIRAVAYISISSLP 338 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + + + L T + E + + VA + +S DL N R R + RQV MYL Sbjct: 339 --MNVENIAAVLTPTEPKSESSPEIVIQAVADKFKVSVEDLKGNSRRREISLARQVGMYL 396 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P+IG FG +DHTTV++ K+ K + D L + ++ L I+ Sbjct: 397 MRQHTDLSLPKIGEVFGGKDHTTVMYGCEKIAKRRDRDPELHQILQQLSDRIN 449 >gi|217968466|ref|YP_002353700.1| chromosomal replication initiation protein [Thauera sp. MZ1T] gi|217505793|gb|ACK52804.1| chromosomal replication initiator protein DnaA [Thauera sp. MZ1T] Length = 500 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 145/509 (28%), Positives = 243/509 (47%), Gaps = 55/509 (10%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + +T SRL+ ++ + +W + L+ L P F+ W++ RYL + Sbjct: 2 TQDFWTFCLSRLEQELPQQQFNTWIKTLRAEPGEGGWA-LIAPNRFVLQWVRERYLRRVE 60 Query: 95 KLFQEEHSRIQGVEILVRS---------------------------VALPSVEKTASSPS 127 +L +E +E+ + A P+ + + Sbjct: 61 ELGEEFAGAPLAIELQLPPAGAARPARAAATADVAPARASAPRSTIEATPAQAVETAETA 120 Query: 128 ITKLSPINTNISKSPIILGKQTISPVFGS--------------PLDSRFVFSTFIEGSSN 173 L ++ P + ++ +P S L+ F F T + G +N Sbjct: 121 PAVLDTVDAAEPAEPPVRPRRAAAPRSHSSEPSSGLDLAYEKTRLNPDFTFDTLVTGRAN 180 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 +A AA +A+ Y NPLF++ VGLGKTHL+ AI NA + P + Y+ Sbjct: 181 DLARAAAMQVAQNPGTSY-----NPLFVYGGVGLGKTHLVHAIGNAVFRHNPRAVIRYVH 235 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 E + A + K R++D+L+IDD+QF K Q EF H N+L ++ K Sbjct: 236 VEDYYADVVRAYQQKSFDAFKRYYRSLDMLIIDDIQFFNNKNRTQEEFFHAFNALTEARK 295 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V D P +++ L+ R+ SR G++V + + EMR +ILK + E ++ + Sbjct: 296 QIVITCDTYPKDIQGLEDRLISRFDWGLTVQIEPPELEMRVAILKK-----KAEALRVLV 350 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 +++V +A+ + ++ REL+GA N++V F + E+A E L L++ +++ I Sbjct: 351 DDDVAFLIAKNLRSNVRELEGALNKVVAYARFHGRQIGLEVAKEALKDLLH-AHNRQLSI 409 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E IQ+ VA +Y I D+ S +R R + RPRQVAM+L+K +TP S P IG FG RDHTT Sbjct: 410 EHIQKTVADYYKIKIADMHSKKRTRVIARPRQVAMWLAKELTPMSLPAIGEAFGGRDHTT 469 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLI 500 VLHA R + ++ D L +V +L +++ Sbjct: 470 VLHACRTITELRLGDAQLNHDVHVLTQVL 498 >gi|302035395|ref|YP_003795717.1| chromosomal replication initiator protein DnaA [Candidatus Nitrospira defluvii] gi|300603459|emb|CBK39789.1| Chromosomal replication initiator protein DnaA [Candidatus Nitrospira defluvii] Length = 446 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 153/465 (32%), Positives = 244/465 (52%), Gaps = 26/465 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++ +V V+ +WF + + +L+VP F W+ Y + + + Sbjct: 2 WNDALVYIQEKVPKQVFETWFTPVVLDRIEDTTAYLAVPNKFFGEWLGEHYRDLLAEAVS 61 Query: 99 EEHS-RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 V +V + +PS L + S G G Sbjct: 62 VAQGDGHLDVSFVVHNKQVPST-----------LPAQQESGSADTAGRGFVASRSKRGVQ 110 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F +F+ G+ N+ A A ++AE + Y NPLF++ VGLGKTHLL AI Sbjct: 111 LNPKYTFKSFVVGAGNQFAHAACMAVAEQPAKAY-----NPLFLYGGVGLGKTHLLNAIG 165 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +R +LR+ YLT E F ++IR + ++L+ RN+D+L+IDD+QFL GK Sbjct: 166 NYLAER-SDLRIAYLTTEQFTNEVINSIRYDKMIDLRKRYRNVDMLMIDDIQFLAGKERT 224 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ+V ++DR P ++ ++ R+RSR + G+ L D E R +IL Sbjct: 225 QEEFFHTFNTLYEAHKQIVLSSDRFPKDMPDIEERLRSRFEWGLIADLQPPDVETRIAIL 284 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 + + ED ++ + E+V+ +A T+ + REL+G+ ++ S +T ++A Sbjct: 285 RK-----KSEDERIALPEDVIHFLATTMKNNIRELEGSLVRVGAYSSLTGQTITLDMAKN 339 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L L+ K + IEDIQ V Y++ DL S RR +T+V PRQ+AMYL + +T Sbjct: 340 VLRDLIGDK-KKIVSIEDIQEAVGSKYHLKIADLKSRRRSKTLVHPRQIAMYLCRELTDA 398 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SFPEIGR+FG +DHTT++HA R++ K E D TL +E LK I Sbjct: 399 SFPEIGRQFGGKDHTTIIHACRQISKAKEADSTLHTTLEGLKEQI 443 >gi|317120850|ref|YP_004100853.1| chromosomal replication initiator protein DnaA [Thermaerobacter marianensis DSM 12885] gi|315590830|gb|ADU50126.1| chromosomal replication initiator protein DnaA [Thermaerobacter marianensis DSM 12885] Length = 459 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 149/475 (31%), Positives = 246/475 (51%), Gaps = 19/475 (4%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 ++ ++ ++ Q+ Y +W + + S+ + + L+VP F + W+ R Sbjct: 1 MVKGELAEVWAEALQHIERQLTRPSYEAWLRNTRPVSLEGDRLVLAVPNQFARDWVLERC 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I ++ +E++V P+ +TA++ P S + Sbjct: 61 SGAIVDSLRQVVGHAVRLEVVVEPQPAPAAAQTAATTEAPLAPPPAAAASDAGSSWR--- 117 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 PL+ ++ F TF+ GS NR+ A + NPLFI+ VGLGK Sbjct: 118 ---TLSQPLNPKYTFDTFVTGSGNRL-----AHAAALAVAEAPARTYNPLFIYGGVGLGK 169 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QA+A+ +++ RV Y++ E F +AIRD L ++ RN+D+LL+DD+Q Sbjct: 170 THLMQAVAHHVLRKH-GSRVAYVSCETFTNEMINAIRDGKTLEFRNRYRNVDVLLVDDIQ 228 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK Q EF H N+L ++ +Q+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 229 FLAGKESTQEEFFHTFNALHEANRQIVISSDRPPKEIPTLEERLRSRFEWGLISDIQPPD 288 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 +E R +IL+ + + KL + ++V+ +A + T+ REL+GA +LV S Sbjct: 289 FETRVAILRK-----KAQLEKLRVPDDVIAFIAERIDTNIRELEGALIRLVAFASLTNHH 343 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++A E+L ++ K+ I IQ +VA++Y + DL + RR R + PRQVAMY Sbjct: 344 IDLDLAQEVLKDILPPPRANKVTIARIQEVVAEYYGVKVRDLKARRRTRAIAFPRQVAMY 403 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P IG FG RDHTTVLHA K+ L D L ++++ L LI + Sbjct: 404 LCRELTEASLPRIGEEFGGRDHTTVLHAYEKIRHDLRNDPQLGRQIKELMDLIRK 458 >gi|188579288|ref|YP_001922733.1| chromosomal replication initiation protein [Methylobacterium populi BJ001] gi|179342786|gb|ACB78198.1| chromosomal replication initiator protein DnaA [Methylobacterium populi BJ001] Length = 501 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 216/488 (44%), Positives = 309/488 (63%), Gaps = 23/488 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + +T V RL+ ++G DV+ASWF RL+ V + L+VPT FLK+WI++ YL+ Sbjct: 19 TDIPAAWTRVKRRLRAELGEDVFASWFARLELEDVEGGVARLTVPTRFLKSWIESHYLDR 78 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEK--TASSPSITKLSPINTNISKSPIIL----- 145 + F+ E + +E+ VR + P+ T + P+ T + + +P L Sbjct: 79 VLTTFRAEADGVSRIEVGVRGASAPARPSAGTQTKPNPTSGPLTRLHATATPAALQGPGP 138 Query: 146 ----------GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 G+ + G+PLD+R F++F+ G SN +A AA+ IA D G Sbjct: 139 MVETEIAAPRGESGSVDLNGAPLDARLTFASFVVGRSNALAHAAAERIARSDGDG---AL 195 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL++HA VGLGKTHLL A +A+ + RV+YLTA+ FM+ F +A++ AL K+ Sbjct: 196 YNPLYVHAGVGLGKTHLLHAAGHAARE--AGRRVIYLTADRFMYGFVNALKTQSALAFKE 253 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR IDLL++DD+QF+QGK IQ EF H LN+L+DS +QVV A+DRPP+ELE+LD R+RSR Sbjct: 254 RLRAIDLLILDDVQFIQGKSIQTEFGHTLNALIDSGRQVVVASDRPPTELEALDERVRSR 313 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L GG+ V +G D +R SIL RL ++ P ++ V +VAR +T +GR+L+GA Sbjct: 314 LAGGLVVEIGGLDEGLRASILSARLDAVRQSHPNFEVSPAVSAYVARAITANGRDLEGAV 373 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 N+L+ + +T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR Sbjct: 374 NRLLAHATLTGAPVTVETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERR 433 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 VV+PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVE Sbjct: 434 TAAVVKPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDAVLGDEVE 493 Query: 495 LLKRLISE 502 LLKR++ + Sbjct: 494 LLKRMLQD 501 >gi|186680551|ref|YP_001863747.1| chromosomal replication initiation protein [Nostoc punctiforme PCC 73102] gi|226735830|sp|B2J2B2|DNAA_NOSP7 RecName: Full=Chromosomal replication initiator protein DnaA gi|186463003|gb|ACC78804.1| chromosomal replication initiator protein DnaA [Nostoc punctiforme PCC 73102] Length = 459 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 249/473 (52%), Gaps = 24/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ ES+++ V RL+ ++ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MEIPIESLWSQVLERLQVELSRPTFETWIKTASAERLENNCLVIRTPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI Q+ G+ I V + S S ++S +TN S P L Sbjct: 61 NTIAHAVQDILGHPVGIYITV------AQGDEVSHFSEREVSWESTNPSSIPESLPHHNH 114 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+S++VFS F+ G++NR+A A+ ++AE NPLF+ VGLGKT Sbjct: 115 K---TTELNSKYVFSRFVVGANNRMAHAASLAVAESPGK-----EFNPLFLCGGVGLGKT 166 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + K P+ ++ Y++ E F +AIR + + ++ R D+LL+DD+QF Sbjct: 167 HLMQAIGHYRWKICPDCKIFYVSTEQFTNDLITAIRKDSMQSFREHYRAADVLLVDDIQF 226 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+GK Q EF + N+L ++ KQVV A+DRPP+++ SL R+ SR G+ + D Sbjct: 227 LEGKEYTQEEFFYTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQKPDL 286 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + ED + + +V+ ++A T++ REL+GA + V + I Sbjct: 287 ETRMAILQK-----KAEDENIRLPRDVIEYIASNYTSNIRELEGALIRAVA---YISIWG 338 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++ K E I ++VA ++++S +DL N R R + RQ+ MYL Sbjct: 339 LPMTVENITPVLEPPNEKMAASPEAILKVVADNFDVSIDDLKGNSRRREISWARQIGMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV+++ K+ ++ + D TL + + L I+ Sbjct: 399 MRQHTSLSLPRIGEEFGGKDHTTVIYSCDKITQLHQGDRTLAQTLRQLSDRIN 451 >gi|149912812|ref|ZP_01901346.1| chromosomal replication initiator protein DnaA [Roseobacter sp. AzwK-3b] gi|149813218|gb|EDM73044.1| chromosomal replication initiator protein DnaA [Roseobacter sp. AzwK-3b] Length = 473 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 170/476 (35%), Positives = 271/476 (56%), Gaps = 16/476 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + + L +G + Y +W + L+ V + SVPT+FL ++ + + I Sbjct: 2 TQEQWGQLKQDLLKSIGKNNYTNWIEPLELADVNEGVATFSVPTSFLGNYVSQNFGDLIL 61 Query: 95 KLFQEEHSRIQGVEILV--RSVALPSVEKTASS-PSITKLSPINTNISKSPIILGKQTIS 151 I+ V+ V S A P++ A + P + + + ++S + Sbjct: 62 YKMNTFAPDIRRVQFRVAANSAARPAMASPAGARPDVDGAADAPASAARSGVTTDAGQPQ 121 Query: 152 PVFG-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 +PLD RF F +F+ G N +A AA+ +AE V NPLF++ VG Sbjct: 122 SASDIRLNTAPLDERFTFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AIA +R P L V+YL+AE FM+RF A+RD ++ K+ R++D+L++D Sbjct: 177 LGKTHLMHAIAWELKQRSPELTVLYLSAEQFMYRFVQALRDRKMMDFKELFRSVDVLMVD 236 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N+L+D KQ+V + DR P E+ +L+ RI+SRLQ G+ V L Sbjct: 237 DVQFIAGKESTQEEFFHTFNALVDQNKQIVISGDRAPGEIANLEDRIKSRLQCGLVVDLH 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 DYE+R IL+++ ++ P L ++ VL +A ++T+ R L+GA +L S Sbjct: 297 PTDYELRLGILQSKSEHYARQYPDLKLSNGVLEFLAHRISTNVRVLEGALTRLFAFASLV 356 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T E+ + L+ ++ +K+ +E+IQR VA HYNI ++++ +R+R RPRQV Sbjct: 357 GHEITLELTQDCLADILRAS-ERKVSVEEIQRQVADHYNIRLSEMIGPKRLRAFARPRQV 415 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYL K MT RS PEIGRRFG RDHTTV+H V+++E++ D + +++E+L+R + Sbjct: 416 AMYLCKQMTSRSLPEIGRRFGGRDHTTVMHGVKRIEELQMQDAQIAEDLEILRRTL 471 >gi|167854885|ref|ZP_02477661.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] gi|167853952|gb|EDS25190.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] Length = 444 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 153/468 (32%), Positives = 259/468 (55%), Gaps = 28/468 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S+++ + L+ +V P Y++W + L+ S + + L F+ W+K+++L I Sbjct: 2 SSLWSDCLTHLQAKVSPTDYSTWLRPLQA-SATSSELVLYAHNQFVATWVKDKFLGEIVT 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + S+ + +++ +R P+ + ++T ++P T ++T + Sbjct: 61 LAR-SLSKNEQLQVDMRVGIKPAEQ------AVTSVTPTAT--------PPQETQATALR 105 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L F F++G SN++A AQ +A + NP ++ GLGKTHLL A Sbjct: 106 SGLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESH----CNPFSLYGGTGLGKTHLLHA 161 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N +K+ PN RVVY+ +E F+ AI+ N N K R++D+L+IDD+QF K Sbjct: 162 IGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKE 221 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H NSL + +KQ++ +D P +E+++ RIRSRL GV+ + + E R + Sbjct: 222 ATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVA 281 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + E+ + ++E+V + + + T+ REL+GA N+ + +F + +T + Sbjct: 282 IL-----MKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAV 336 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + + IE+IQ+ VA++YNI DL S R R+V RPRQ+AM L+K +T Sbjct: 337 REALKDLIAS-YDHLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELT 395 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA + + ++ +TD +++++ L R +S Sbjct: 396 NHSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLS 443 >gi|219871632|ref|YP_002476007.1| chromosomal replication initiation protein [Haemophilus parasuis SH0165] gi|219691836|gb|ACL33059.1| chromosomal replication initiator protein [Haemophilus parasuis SH0165] Length = 444 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 153/468 (32%), Positives = 259/468 (55%), Gaps = 28/468 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S+++ + L+ +V P Y++W + L+ S + + L F+ W+K+++L I Sbjct: 2 SSLWSDCLTHLQAKVSPTDYSTWLRPLQA-SATSSELVLYAHNQFVATWVKDKFLGEIVT 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + S+ + +++ +R P+ + ++T ++P T ++T + Sbjct: 61 LAR-SLSKNEQLQVEMRVGIKPAKQ------AVTSVTPTAT--------PPQETQATALR 105 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L F F++G SN++A AQ +A + NP ++ GLGKTHLL A Sbjct: 106 SGLTETLTFDNFVQGKSNQLAKAVAQQVASNPGESH----CNPFSLYGGTGLGKTHLLHA 161 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N +K+ PN RVVY+ +E F+ AI+ N N K R++D+L+IDD+QF K Sbjct: 162 IGNEILKQNPNARVVYIHSERFVQDMVKAIKANTIENFKKFYRSLDVLMIDDIQFFANKE 221 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H NSL + +KQ++ +D P +E+++ RIRSRL GV+ + + E R + Sbjct: 222 ATQEEFFHTFNSLFERSKQIIVTSDVFPKNIENIEERIRSRLSWGVNAAIEPPELETRVA 281 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + E+ + ++E+V + + + T+ REL+GA N+ + +F + +T + Sbjct: 282 IL-----MKKAEERGIELSEDVAFFLGQKLRTNVRELEGALNRAIAWSNFTSRQITIDAV 336 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ + + IE+IQ+ VA++YNI DL S R R+V RPRQ+AM L+K +T Sbjct: 337 REALKDLIAS-YDHLITIENIQKTVAEYYNIKMADLKSKSRTRSVARPRQMAMALAKELT 395 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG RDHTTV+HA + + ++ +TD +++++ L R +S Sbjct: 396 NHSLPEIGREFGGRDHTTVMHACKTINELRDTDNSIQEDYTNLTRKLS 443 >gi|257091664|ref|YP_003165305.1| chromosomal replication initiation protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044188|gb|ACV33376.1| chromosomal replication initiator protein DnaA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 473 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 141/481 (29%), Positives = 244/481 (50%), Gaps = 25/481 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETI 93 S ++ S+ + ++ P + +W + L+ + L P F+ W+K RYL I Sbjct: 2 SSFWSSCLSQFEQELPPQQFNTWIRPLRLEGEEDFARGLRLLAPNGFILKWVKERYLARI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII--------- 144 +L E + G+ + + A P + SPS S +K + Sbjct: 62 EELGSEYFAAPVGITLTLGGRAAPPKDLAPDSPSKDSPSGDGKTAAKVNAVNRHTSLLKN 121 Query: 145 --LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 L + + L F F I G +N +A A++ +A NPLFI+ Sbjct: 122 GSLVDRDRPSYEKTRLIPTFTFENLIVGKANDLARAASRQVAISPGEA----TYNPLFIY 177 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHL+ AI N ++ P+ V Y+ AE + A + K R++D+ Sbjct: 178 GGAGLGKTHLIHAIGNHILECFPDRIVRYVHAEDYYSDVVRAYQQKSFDVFKRYYRSLDV 237 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+ F GK Q EF + N+L ++ KQ+V ++D P + L+ R+ +R G++ Sbjct: 238 LLLDDVHFFNGKNRTQEEFFFVFNALSEAKKQLVISSDTYPKNISGLEDRLVTRFDWGLT 297 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + EMR +ILK + E + +++EV +VA+ + ++ REL+GA +++ Sbjct: 298 VQIEPPETEMRVAILKK-----KAELEGVLLDDEVAFYVAKHLRSNVRELEGALKKVLAY 352 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F + ++A E L ++ + +++ +++IQ+ VA ++ I DL S +R R +VR Sbjct: 353 SAFHGREIALDLAKEALKDVIGS-VNRQITVDNIQKTVADYFKIKVADLFSKKRTRVIVR 411 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM+L+K +T +S+P IG FG RDHTTVLHAVR ++ + D L +V +L +++ Sbjct: 412 PRQIAMWLTKNLTSQSYPSIGEAFGGRDHTTVLHAVRTIDDLRAKDNELNHDVHVLLQVL 471 Query: 501 S 501 Sbjct: 472 K 472 >gi|197334133|ref|YP_002154781.1| chromosomal replication initiator protein DnaA [Vibrio fischeri MJ11] gi|197315623|gb|ACH65070.1| chromosomal replication initiator protein DnaA [Vibrio fischeri MJ11] Length = 446 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 150/457 (32%), Positives = 249/457 (54%), Gaps = 24/457 (5%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR---IQGVEILVRS 113 W + L+ + N + L P F+ W++++YL +I L E E+ + Sbjct: 1 MWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSINSLLNEFCGNDIPTLRFEVGSKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP-------VFGSPLDSRFVFST 166 V+ P+V K ++ S ++ + ++ S ++ + F+ Sbjct: 60 VSAPAVPKQTAADVAAATSAPAQLQARQSVHKPWESEGAGPVAADLNHRSNVNPKHKFTN 119 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+EG SN++ L AA+ +++ Y NPLF++ GLGKTHLL A+ NA + +P+ Sbjct: 120 FVEGKSNQLGLAAARQVSDNPGTAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDSKPD 174 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 RVVY+ +E F+ A+++N K R++D LLIDD+QF K Q EF H N Sbjct: 175 ARVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFN 234 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL + + Sbjct: 235 ALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKA 289 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTG 404 ED ++++ +EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 290 EDHQIHLADEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ 349 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM LSK +T S PEIG F Sbjct: 350 -EKLVTIDNIQKTVAEYYKIKMADLLSKRRSRSVARPRQLAMALSKELTNHSLPEIGDAF 408 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDHTTVLHA RK+ ++ E +K++ L R +S Sbjct: 409 GGRDHTTVLHACRKIAQLREESHDIKEDYSNLIRTLS 445 >gi|260891931|ref|YP_003238028.1| chromosomal replication initiator protein DnaA [Ammonifex degensii KC4] gi|260864072|gb|ACX51178.1| chromosomal replication initiator protein DnaA [Ammonifex degensii KC4] Length = 444 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 147/474 (31%), Positives = 242/474 (51%), Gaps = 35/474 (7%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + + + + + L+ V + W + L+ + + V+++VP +F K W+ RY Sbjct: 1 MVATELQRCWKEILANLEKVVARHSFEHWLKPLRPVACANQTVYIAVPNHFSKDWLTQRY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + F E V+ ++ + A + S P Sbjct: 61 APILKQAFSEALGMDLAVKFILAEEEPLYINLEAKNNSAVITPP---------------- 104 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+ ++ F F+ G+SNR A + NPLFI+ VGLGK Sbjct: 105 -------QLNPKYTFENFVVGNSNRF-----AHAAALAVAEAPARAYNPLFIYGGVGLGK 152 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + + R+P+L+V Y+T E F A++ N ++ RN+D+LLIDD+Q Sbjct: 153 THLMHAIGHHILSRRPDLKVAYVTTEKFTNEMIDALQMNRTQQFREKYRNVDVLLIDDIQ 212 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK Q EF H N+L ++A+Q+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 213 FLAGKERTQEEFFHTFNTLYEAARQIVISSDRPPKEIPTLEERLRSRFEWGLITDIQPPD 272 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 +E R +IL+ + + + + +E L+ +A + ++ REL+GAF ++V + Sbjct: 273 FETRVAILRK-----KAQLENVTVPDETLLFIADRIQSNIRELEGAFIRVVAFAALTNSP 327 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E A +L + + K++ +E IQ +VAK+YN+ DL +R R V PRQ+AMY Sbjct: 328 ITPETAATVLKDIFHAPRKKEVTVETIQEVVAKYYNLKPEDLRGKKRHRAVALPRQIAMY 387 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T S P+IG FG RDHTTVLHA K+ L+ D+ L+ V L I Sbjct: 388 LARELTDLSLPKIGELFGGRDHTTVLHACEKISAALKEDLKLQGVVSELINRIK 441 >gi|242243255|ref|ZP_04797700.1| replication initiation protein DnaA [Staphylococcus epidermidis W23144] gi|242233204|gb|EES35516.1| replication initiation protein DnaA [Staphylococcus epidermidis W23144] Length = 455 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 255/470 (54%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + V F +W+ RY E Sbjct: 5 MSEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEI 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ ++ + + + P N S GK+ Sbjct: 65 MQAIIYD----VIGYEVKPHFISEDELASYNNVNTQEVQEPQIQNSSIDDKTWGKE---- 116 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 117 ----QFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 167 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+Q Sbjct: 168 MHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQ 227 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 228 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 287 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 288 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 342 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 343 ELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 403 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 452 >gi|251811364|ref|ZP_04825837.1| replication initiation protein DnaA [Staphylococcus epidermidis BCM-HMP0060] gi|251805113|gb|EES57770.1| replication initiation protein DnaA [Staphylococcus epidermidis BCM-HMP0060] Length = 455 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 255/470 (54%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + V F +W+ RY E Sbjct: 5 MSEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEI 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ ++ + + + P + S GK+ Sbjct: 65 MQAIIYD----VIGYEVKPHFISEDELASYNNVNTQEVQEPQVQHSSIDDKTWGKE---- 116 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 117 ----QFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 167 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+Q Sbjct: 168 MHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQ 227 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 228 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 287 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 288 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 342 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 343 ELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 403 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 452 >gi|152981050|ref|YP_001351691.1| chromosomal replication initiation protein [Janthinobacterium sp. Marseille] gi|166214676|sp|A6STW2|DNAA_JANMA RecName: Full=Chromosomal replication initiator protein DnaA gi|151281127|gb|ABR89537.1| chromosomal replication initiator protein DnaA [Janthinobacterium sp. Marseille] Length = 460 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 136/469 (28%), Positives = 241/469 (51%), Gaps = 14/469 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S++L+ ++ P Y++W + L + ++ P F W+K ++ IT Sbjct: 2 ENFWQTCSAQLEQELTPQQYSAWIKPLAPLDYEDGTLRIAAPNRFKLDWVKTQFAGRITS 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + V+ ++ + + T S+ S PI +P Sbjct: 62 IAAQFWDMPVDVQFVLDPRLASAKKPTTSASVAPIQSDDVPASVLEPIPSNATDHTPRRD 121 Query: 156 -SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S +++ F +F+ G +N++A AA +A Y NPLF++ VGLGKTHL+ Sbjct: 122 QSRINTALTFDSFVTGKANQLARAAAIQVANNPGSSY-----NPLFLYGGVGLGKTHLIH 176 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + P++++ Y+ AE ++ +A + + K ++DLLLIDD+QF GK Sbjct: 177 AIGNQVLADNPDVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFGGK 236 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + + EMR Sbjct: 237 SRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPELEMRV 296 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + + +++V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 297 AIL-----LKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIEV 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L L++ +++ +E+IQ+ VA +NI D+ S +R + RPRQ+AMYL+K + Sbjct: 352 VKDALKDLLSVQ-NRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKEL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ E+ +L++ + Sbjct: 411 TQKSLPEIGELFGGRDHTTVLHAVRKIAADRGKSPECNHELHVLEQTLK 459 >gi|27466919|ref|NP_763556.1| chromosomal replication initiation protein [Staphylococcus epidermidis ATCC 12228] gi|282874721|ref|ZP_06283600.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis SK135] gi|38257580|sp|Q8CQK7|DNAA_STAES RecName: Full=Chromosomal replication initiator protein DnaA gi|27314461|gb|AAO03598.1|AE016744_1 chromosomal replication initiator protein [Staphylococcus epidermidis ATCC 12228] gi|281296437|gb|EFA88952.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis SK135] gi|329724160|gb|EGG60678.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU144] Length = 451 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 255/470 (54%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + V F +W+ RY E Sbjct: 1 MSEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ ++ + + + P + S GK+ Sbjct: 61 MQAIIYD----VIGYEVKPHFISEDELASYNNVNTQEVQEPQVQHSSIDDKTWGKE---- 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 ----QFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+Q Sbjct: 164 MHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQ 223 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 224 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 283 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 284 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 338 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 339 ELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 399 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448 >gi|126730156|ref|ZP_01745968.1| chromosomal replication initiation protein [Sagittula stellata E-37] gi|126709536|gb|EBA08590.1| chromosomal replication initiation protein [Sagittula stellata E-37] Length = 459 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 172/465 (36%), Positives = 271/465 (58%), Gaps = 16/465 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVL-HNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + ++ +G + Y +W Q L+F + IV L PTNF ++ + + + Sbjct: 6 WGALQEQICKTIGQNNYKTWIQPLRFRGITADGIVTLQAPTNFFGTYVSQNFGDML---- 61 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 ++I VE R +A + SS + + + + G+P Sbjct: 62 ---LAQISTVEPSARRLAFQAGILDDSSEDAEEKAKPLNIPEAEQAPVTSSRDQQLPGAP 118 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD RF F TF+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 119 LDMRFTFDTFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHAIA 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 +R P L V+YL+AE FM+RF A+R+ ++ K+ R++D+L++DD+QF+ GK Sbjct: 174 WELSQRNPGLTVLYLSAEQFMYRFVQALRERKMMDFKEMFRSVDVLMVDDVQFIAGKDST 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L+D KQ++ +ADR P E++ L+ RIRSRLQ G+ V L DYE+R IL Sbjct: 234 QEEFFHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSGLVVDLHPTDYELRLGIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 ++++ + + P L I++ VL +A ++T+ R L+GA +L S + ++ + Sbjct: 294 QSKVEVYRGMHPGLQIDDGVLEFLAHRISTNVRVLEGALTRLFAFASLVGKPINMDLVQD 353 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L+ ++ +K+ I++IQR VA+HYNI +D++ +RVR RPRQVAMYL K +T R Sbjct: 354 SLADVLRAS-ERKISIDEIQRKVAEHYNIRLSDMIGPKRVRNFARPRQVAMYLCKQLTSR 412 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S PEIGRRFG RDHTTV+H VR++E++ + D + ++VE+L+R + Sbjct: 413 SLPEIGRRFGGRDHTTVMHGVRRIEELRQQDGQIDEDVEMLRRAL 457 >gi|293367580|ref|ZP_06614233.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)] gi|291318293|gb|EFE58686.1| ATPase [Staphylococcus epidermidis M23864:W2(grey)] Length = 455 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 255/470 (54%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + V F +W+ RY E Sbjct: 5 MSEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEI 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ ++ + + + P + S GK+ Sbjct: 65 MQAIIYD----VIGYEVKPHFISEDELASYNNVNTKEVQEPQVQHSSIDDKTWGKE---- 116 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 117 ----QFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 167 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+Q Sbjct: 168 MHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQ 227 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 228 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 287 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 288 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 342 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 343 ELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 403 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 452 >gi|49473788|ref|YP_031830.1| chromosomal replication initiation protein [Bartonella quintana str. Toulouse] gi|49239291|emb|CAF25617.1| Chromosomal replication initiator protein D [Bartonella quintana str. Toulouse] Length = 523 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 280/474 (59%), Positives = 359/474 (75%), Gaps = 6/474 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 50 EEEGAAAFARVMAQLKAQVGIEAYTSWFGRLKLAEYSRNLVKLSVPTAFLRSWINNHYGS 109 Query: 92 TITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +T L+++E+S I VE++VR V+ V +T+++P + + ++ + K Sbjct: 110 LLTNLWKQENSAILRVEVIVRGMKRVSKGVVCRTSAAPVVLEGQTASSFVESYTEPSVKD 169 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + VFGSPLDSR+ F +F+EGSSNRVAL AA+SIAE + +R NPLFIHASVGLG Sbjct: 170 IEAGVFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHK---SALRFNPLFIHASVGLG 226 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQA+A A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDM Sbjct: 227 KTHLLQAVAAAALKRLMPARVIYLTAEYFMWRFATAIRDNAALSFKEQLRDIDLLIIDDM 286 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK IQ+EFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQGGV++ + + D Sbjct: 287 QFLQGKSIQNEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEVPD 346 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YEMR +L+ RL + Q++D + I++EVL ++A+TV SGR+++GAFNQL+FR SF L Sbjct: 347 YEMRLKMLRQRLKVVQQDDNMVVISDEVLQYIAKTVLGSGRDIEGAFNQLLFRQSFESDL 406 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E DELL HL +GE+K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQVAMYL Sbjct: 407 SLERIDELLGHLTRSGESKRIRIEEIQRAVARHYNVSKQDLLSNRRTRTVVKPRQVAMYL 466 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 467 AKMLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 520 >gi|209883691|ref|YP_002287548.1| chromosomal replication initiator protein DnaA [Oligotropha carboxidovorans OM5] gi|209871887|gb|ACI91683.1| chromosomal replication initiator protein DnaA [Oligotropha carboxidovorans OM5] Length = 477 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 222/477 (46%), Positives = 310/477 (64%), Gaps = 10/477 (2%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + ++ V RL++ VG DVY+SWF R+ + VHLSVPT FLK+WI+ Y + Sbjct: 5 EGTEQDRWSRVKGRLRSSVGEDVYSSWFARMDLERIGGESVHLSVPTRFLKSWIQAHYAD 64 Query: 92 TITKLFQEEHSRIQGVEILVRS-VALPSVEKTASSPSITKLSP----INTNISKSPIILG 146 + +Q E I +++ VR+ V +P+ K A + +L+ + + + Sbjct: 65 RVLSCWQAEMPDIHRIDLTVRTPVRVPAAVKDAKATIEERLTEHDHRAHHELRAVATVPV 124 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + + GSPLD R F+TF+ G SN +AL AA+ +AE V NPL+IHA VG Sbjct: 125 STSHDALGGSPLDPRLTFATFVGGRSNTLALAAARQVAE--GRRGDNVMFNPLYIHAGVG 182 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLLQA+ A +V+YLTAE FM+ F +A++ AL K++LR ID+L+ID Sbjct: 183 LGKTHLLQAVTWAG--NTSERKVLYLTAEKFMYGFVAALKTQTALAFKEALRGIDVLVID 240 Query: 267 DMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 D+QFLQGK Q EFCH LN+L+D+ +QVV AADRPPS+LESLD R+RSRL GG+ V +G Sbjct: 241 DLQFLQGKSTQAEFCHTLNALIDAGRQVVIAADRPPSDLESLDDRVRSRLAGGLVVEMGA 300 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 E+R ILK+R+ ++ + E VL ++A+ +T +GR+L+GA N+L+ A Sbjct: 301 LGEELRLEILKSRVTAARAHHASFEVPEPVLEYLAKAITHNGRDLEGAINRLLAHSKLNA 360 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E+A+ + L+ E ++++IEDIQR+VA+ YN+SR+DLLS+RR VVRPRQVA Sbjct: 361 TSVTLEMAEREVRDLIRPQEPRRVKIEDIQRVVARQYNVSRSDLLSSRRTANVVRPRQVA 420 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYL+K +T RS PEIGRRFG RDHTTVLHAVRK+E ++ DI L EVELLKR + E Sbjct: 421 MYLAKTLTLRSLPEIGRRFGGRDHTTVLHAVRKIEALVAKDIALSDEVELLKRQLQE 477 >gi|304315538|ref|YP_003850683.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777040|gb|ADL67599.1| chromosomal replication initiator protein DnaA [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 443 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 149/473 (31%), Positives = 262/473 (55%), Gaps = 34/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +C +++ + +LK+++ Y +W LK ++L NI+ LS F K I RYL Sbjct: 1 MYEDCYTLWDAIFEKLKSELTSTSYTTWLVHLKPVALLDNILVLSTVNVFTKNIINGRYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + I I ++ V+ E ++ K Sbjct: 61 NVIYDAAK----SITNKNIEIKIVSEDEEEYKKIKETVQY----------------KNDK 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKT Sbjct: 101 DKIVSNMLNPKYTFDTFVVGNSNKLAHAACLAVAQSPARAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ N +++Y+T+E F ++I+D+ ++ R++D+LLIDD+QF Sbjct: 156 HLMHAIGHFVLEHNSNTKIMYVTSETFTNELVNSIKDDKNEEFRNKYRSMDILLIDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+ Sbjct: 216 IAKKERTQEEFFHTFNTLYEANKQIIVSSDRPPKEIPTLEDRLRSRFEWGLIADIQPPDF 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK + ++ LNI ++VL+++A + ++ REL+GA ++V S + Sbjct: 276 ETRIAILKK-----KAQNENLNIPDDVLIYIAEKIPSNIRELEGALIRIVAFSSLTKANI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A + L +++ +K+ ++ IQ V K+YNI D +S +R +T+ PRQ+AMYL Sbjct: 331 DLDLAKDALKDIISNK-VRKITVKLIQEEVCKYYNIKYEDFISKKRTKTIAFPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ MT S P+IG FG +DHTTV+HA K+ ++ D +L K++E LK+ I Sbjct: 390 AREMTDLSLPKIGEEFG-KDHTTVIHAYDKISNDIKEDESLNKQIEELKKRIK 441 >gi|329735774|gb|EGG72055.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU028] gi|329736075|gb|EGG72348.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis VCU045] Length = 451 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 255/470 (54%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + V F +W+ RY E Sbjct: 1 MSEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ ++ + + + P + S GK+ Sbjct: 61 MQAIIYD----VIGYEVKPHFISEDELASYNNVNTKEVQEPQVQHSSIDDKTWGKE---- 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 ----QFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+Q Sbjct: 164 MHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQ 223 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 224 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 283 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 284 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 338 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 339 ELTAEALKDIIQSPKSKKITIQDIQKVVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 399 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448 >gi|288959510|ref|YP_003449851.1| chromosomal replication initiator protein [Azospirillum sp. B510] gi|288911818|dbj|BAI73307.1| chromosomal replication initiator protein [Azospirillum sp. B510] Length = 505 Score = 472 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 177/510 (34%), Positives = 274/510 (53%), Gaps = 53/510 (10%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ + + + RLK +VG + SW Q L S++ V + VPT F++ W+ Y + Sbjct: 5 VSLDQQWARIRGRLKEEVGEIAFRSWLQPLSVASLVGGEVCIVVPTRFMRDWVLTHYADR 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSV--------EKTASSPSITKLSPINTNISKSPII 144 I L+ E+ +Q ++++V S P+ + P + P + P Sbjct: 65 IRALWSGENPEVQSIDVIVASTNPPAALVADNDDSDDDRPPPRAAESRPAPRQAASLPPR 124 Query: 145 LGKQTIS--------------------------------PVFGSPLDSRFVFSTFIEGSS 172 +S + LD RF F F+ G Sbjct: 125 PSDAGLSGEPAPSTVYTSASYGGASDESPTAVPAILEDRSDLSAALDPRFTFENFVVGKP 184 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N +A AA+ +A+ T V NPLF++ VGLGKTHL+ A+A K PN +V+YL Sbjct: 185 NELAHAAARRVADA-----TAVTFNPLFLYGGVGLGKTHLMHALAWQIRKNDPNRKVLYL 239 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 +AE FM++F A+R + K R++D+L+IDD+QF+ GK Q EF H N+L+D Sbjct: 240 SAEKFMYQFIRALRFKDTMAFKQQFRSVDVLMIDDVQFISGKDSTQEEFFHTFNALVDQN 299 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 +QV+ +AD+ PS+LE ++ R+RSRL G+ + YE+R IL+ + Q Sbjct: 300 RQVIISADKSPSDLEGMEERLRSRLGWGLVADIHPTTYELRLGILQAKADALQA-----T 354 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMR 410 I +VL +A +T++ REL+GA N++V ++ E E+L L+ +++ Sbjct: 355 IPLKVLEFLAHKITSNVRELEGALNRIVAHAELVGRSISLETTQEVLHDLLRAN-DRRVT 413 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I++IQ+ VA+HYNI D+ S RR R V RPRQ+AMYL+K +T RS PEIGR+FG RDHT Sbjct: 414 IDEIQKRVAEHYNIRVADMHSARRARAVARPRQIAMYLAKQLTARSLPEIGRKFGGRDHT 473 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TV+HAV+KVE++ TD + ++VELL+R++ Sbjct: 474 TVMHAVKKVEELRTTDPSFAEDVELLRRML 503 >gi|237749314|ref|ZP_04579794.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes OXCC13] gi|229380676|gb|EEO30767.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes OXCC13] Length = 459 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 140/469 (29%), Positives = 244/469 (52%), Gaps = 15/469 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E + S+L++++ P Y++W + L I+ ++ P F W+K +Y + IT Sbjct: 2 EKFWQSCLSQLESELTPQQYSAWIKPLVPLDYKDGILRVAAPNRFKLDWVKTQYADRITS 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + V+ ++ S + +PS K P+ + + + +P Sbjct: 62 LACQFLESTVDVQFMLNPGTR-SASPSKPAPSQPKPEPVMPSETAETSQRSHVSDTPTRE 120 Query: 156 -SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++ F +F+ G +N++A AA +A Y NPL++ VGLGKTHL+ Sbjct: 121 QSRINVEMTFDSFVTGKANQLARAAAIQVANNPGVSY-----NPLYLFGGVGLGKTHLIH 175 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + P+ ++ Y+ AE ++ +A + + K ++D+LLIDD+QF GK Sbjct: 176 AIGNQVLADTPSAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDMLLIDDIQFFSGK 235 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + + EMR Sbjct: 236 SRTQEEFFYAFEALIAARKQIIITSDTYPKEISGMDDRLTSRFDSGLTVAIEPPELEMRV 295 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL I + + ++++V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 296 AIL-----IKKACQEGIQLSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGRDITIEL 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+N +++ +E+IQ+ VA + I D+ S RR + RPRQ+AMYL+K + Sbjct: 351 TKEALKDLLNVQ-NRQISVENIQKTVADFFRIKVADMYSKRRPANIARPRQIAMYLTKEL 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + + E+ +L++ + Sbjct: 410 TQKSLPEIGELFGGRDHTTVLHAVRKIAQDRLKNPECNHELHVLEQTLK 458 >gi|329902527|ref|ZP_08273137.1| Chromosomal replication initiator protein DnaA [Oxalobacteraceae bacterium IMCC9480] gi|327548755|gb|EGF33394.1| Chromosomal replication initiator protein DnaA [Oxalobacteraceae bacterium IMCC9480] Length = 464 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 243/473 (51%), Gaps = 18/473 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ + S++L+ ++ P +++W + L + ++ P F W+K ++ IT Sbjct: 2 DNFWQTCSAQLEQELTPQQFSAWIKPLVPLDYEEGRLRIAAPNRFKLDWVKTQFANRITV 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI-----ILGKQTI 150 L + V+ ++ + TA+ P + N + + + + Sbjct: 62 LAGQYWEEPIDVQFVLDPRLNAPRKPTAAMPVAARAEGNGINGMSASVGGLIDLPPVDSA 121 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S +++ F +F+ G +N++A AA +A+ Y NPLF++ VGLGKT Sbjct: 122 PRRDQSRVNTALTFDSFVTGKANQLARAAAIQVADNPGVSY-----NPLFLYGGVGLGKT 176 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI N + P+ ++ Y+ AE ++ +A + + K ++D+LLIDD+QF Sbjct: 177 HLVHAIGNQVMADNPSAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDVLLIDDIQF 236 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + + Sbjct: 237 FGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPEL 296 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 EMR +IL + + +N +++V VA+ + ++ REL+GA +++ F + Sbjct: 297 EMRVAIL-----LKKAAQEGVNFSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGKDI 351 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+ + L L++ +++ +E+IQ+ VA +NI D+ S +R + RPRQ+AMYL Sbjct: 352 TIEVVKDALKDLLSVQ-NRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYL 410 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T +S PEIG FG RDHTTVLHAVRK+ E+ +L++ + Sbjct: 411 AKELTQKSLPEIGELFGGRDHTTVLHAVRKIGADRSKSPECNHELHVLEQTLK 463 >gi|52424540|ref|YP_087677.1| chromosomal replication initiation protein [Mannheimia succiniciproducens MBEL55E] gi|61212538|sp|Q65VB8|DNAA_MANSM RecName: Full=Chromosomal replication initiator protein DnaA gi|52306592|gb|AAU37092.1| DnaA protein [Mannheimia succiniciproducens MBEL55E] Length = 457 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 157/473 (33%), Positives = 253/473 (53%), Gaps = 19/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++ +L++Q+ + W + L+ + + N + L F+K+W++N YL Sbjct: 1 MERDLSQLWQNCLLQLQDQISSSDFGLWLRPLQADTSMPNTIVLYASNMFVKSWVENNYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ITK+ Q+ S + I V+ + P+ K + I ++ + + Sbjct: 61 AQITKIAQD-LSNNTDLVIKVQEGSKPAARKVVAQQEIANTPVQHS------APMPENEP 113 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F S L+ +F F+EG SN++A Q +A NPLF++ GLGKT Sbjct: 114 QAAFRSNLNQHHLFENFVEGKSNQLARAVGQKVANRPG----DKSANPLFLYGGTGLGKT 169 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A+ N I N RVVY+ AE F+ + A++ N K R++D LLIDD+QF Sbjct: 170 HLLHAVGNGIIAGNSNARVVYIHAERFVQEYVKALKAERIENFKKFYRSLDALLIDDIQF 229 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + NSL + KQ++ +DR P E+E +D R++SR G+S+ + D Sbjct: 230 FAGKDGTQEEFFNTFNSLFEGEKQIILTSDRYPREIEKIDDRLKSRFSWGLSIAIEPPDL 289 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + E+ + + EEV + + + T+ REL+GA N++ F + Sbjct: 290 ETRVAIL-----MKKAEEKNIYLPEEVAFFIGQKLRTNVRELEGALNRVHANADFTGKAI 344 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L ++ K + +E+IQ+MVA++Y I +DL S R R++ RPRQ+AM L Sbjct: 345 TIDFVRETLKDMLALQ-DKLVTVENIQKMVAEYYRIKVSDLKSKNRSRSIARPRQLAMAL 403 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T RS PEIG+ FGDRDHTTVLHA R + + + D ++++ L R +S Sbjct: 404 AKELTNRSLPEIGKAFGDRDHTTVLHACRTIAALRDDDNNIQEDWSNLIRTLS 456 >gi|57865939|ref|YP_190094.1| chromosomal replication initiation protein [Staphylococcus epidermidis RP62A] gi|71151806|sp|Q5HJZ9|DNAA_STAEQ RecName: Full=Chromosomal replication initiator protein DnaA gi|57636597|gb|AAW53385.1| chromosomal replication initiator protein DnaA [Staphylococcus epidermidis RP62A] Length = 451 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 255/470 (54%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + ++ Y ++ + + +S+ ++ + V F +W+ RY E Sbjct: 1 MSEKEIWDKVLEIAQERISNTSYQTFIKDTQLYSLKNDEAIILVSLPFNASWLNQRYSEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + G E+ ++ + + + P + S GK+ Sbjct: 61 MQAIIYD----VIGYEVKPHFISEDELASYNNVNTQEVQEPQVQHSSIDDKTWGKE---- 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 ----QFNMHNTFDTFVIGPGNRFPHAASLAVAEAPAEAY-----NPLFIYGGVGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + +PN +V+Y ++E F F +IRDN ++ R ID+LLIDD+QF+Q Sbjct: 164 MHAIGHHVLSNKPNAKVIYTSSEKFTNEFIKSIRDNETEAFREKYRKIDVLLIDDIQFIQ 223 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 224 NKEQTQEEFFHTFNELHQNNKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 283 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + E+ L+I E L ++A + ++ REL+GA +L+ +T Sbjct: 284 RMAILQK-----KIEEENLDIPPEALNYIANQIQSNIRELEGALTRLLAYSKLQGKPITT 338 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L ++ + ++KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 339 ELTAEALKDIIQSPKSKKITIQDIQKIVGQYYSVRIEDFSAKKRTKSIAYPRQIAMYLSR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ +++D T K+EVE L++ I Sbjct: 399 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIANDIKSDPTFKQEVENLEKEI 448 >gi|289577266|ref|YP_003475893.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter italicus Ab9] gi|297543499|ref|YP_003675801.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289526979|gb|ADD01331.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter italicus Ab9] gi|296841274|gb|ADH59790.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 443 Score = 471 bits (1213), Expect = e-130, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 257/473 (54%), Gaps = 34/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + I+ + +K+++ P Y +W +K +++ N++ LS P F K I RY+ Sbjct: 1 MYGDHRQIWERIVEVIKSELTPTSYNTWLVHIKPLAIIDNVLFLSTPNTFTKNIINGRYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + +++ ++IL K + I + + Sbjct: 61 NIIYDAASKASNKLYEIKILSEDEEEYREIKES--------------------IEKENST 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKT Sbjct: 101 ESTTLSTLNPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + K Q +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF Sbjct: 156 HLMHAIGHFINKHQSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q EF H N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DY Sbjct: 216 IAKKERTQEEFFHTFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDY 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK + + LNI +EVL +VA + ++ REL+GA ++V + + Sbjct: 276 ETRIAILKK-----KAQTENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKANI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A + L +V+ T+++ ++ IQ V ++YNI D S +R + + PRQ+AMYL Sbjct: 331 DLELAKQALKEIVSNK-TREITVKLIQEEVCRYYNIKLEDFRSRKRTKNIAYPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IG FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 390 ARELTDLSLPKIGEEFG-KDHTTVIHAYEKISNEIKEDELLSRQIEELKKRIK 441 >gi|77163562|ref|YP_342087.1| chromosomal replication initiator protein, DnaA [Nitrosococcus oceani ATCC 19707] gi|123757965|sp|Q3JF39|DNAA_NITOC RecName: Full=Chromosomal replication initiator protein DnaA gi|76881876|gb|ABA56557.1| chromosomal replication initiator protein, DnaA [Nitrosococcus oceani ATCC 19707] Length = 449 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 241/470 (51%), Gaps = 26/470 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ + L+ ++ P + ++ + L+ + L P F+ W++N I Sbjct: 2 PSSLWKHCLNHLEGELDPQEFNTYIRPLQAIQ-QGTSLQLYAPNQFVIDWVQNCAESRIN 60 Query: 95 KLFQEEH-SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L RI+ + V S +L + +K + + + + Sbjct: 61 ALLSHYSSGRIEKALLEVGSCSLQPQPHIQAVELTSKSA-----------RSSSRVVDRI 109 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ + F +F+EG SN++ A+ +AE Y NPLFI+ VGLGKTHL+ Sbjct: 110 PESRLNKNYTFDSFVEGKSNQLPRAASHQVAENPGSAY-----NPLFIYGGVGLGKTHLM 164 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N R P+ RVVYL +E F+ A++ N K R++D+LLIDD+QF G Sbjct: 165 HAVGNYIRSRNPSARVVYLHSEQFVAEMIKALQLNAINEFKTRYRSVDILLIDDIQFFAG 224 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + N+LL+ Q++ DR P E+ L+ R+ SR G++V + + E R Sbjct: 225 KERSQEEFFYTFNTLLEVQHQIILTCDRFPKEVNGLEERLTSRFGWGLTVAVEPPELETR 284 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL +++ + ++++V + R + ++ REL+GA +++ F +T E Sbjct: 285 VAIL-----MNKASIENIILSDDVAFFLGRLIYSNIRELEGALRRVIAYSRFTHRPITME 339 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E L L+ T + K + IE+IQ+ VA++Y I +DL S RR R V RPRQ AM LSK Sbjct: 340 LTREALKDLL-TLQEKLVTIENIQKTVAEYYKIRVSDLSSKRRSRVVARPRQTAMSLSKE 398 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S EIG+ FG RDHTTVLHA RK+ ++ D + ++ L + +S Sbjct: 399 LTDHSLTEIGKFFGGRDHTTVLHACRKINELKSIDRRMAEDYHNLLKKLS 448 >gi|309388282|gb|ADO76162.1| chromosomal replication initiator protein DnaA [Halanaerobium praevalens DSM 2228] Length = 466 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 152/475 (32%), Positives = 260/475 (54%), Gaps = 20/475 (4%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL-HNIVHLSVPTNFLKAWIKNRYL 90 + + I+ +K ++ + +WF K N + L VP NF++ WI+++Y Sbjct: 5 QKELDHIWKKTLENIKEKITNPSFNTWFSETKAVMTTAENQLVLQVPNNFIQEWIESQYT 64 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I ++ + + +L P+ K + K +P K + T Sbjct: 65 DLIEEILTDLTGNQWSLILLT-----PAEVKDFKANKKNKQNPKTKKDIKEDKKEKRDTE 119 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S + + + ++ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKT Sbjct: 120 SELKQNGFNPKYTFDTFVVGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGDVGLGKT 174 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA+ +K P+ +VVY+++E F ++I+D+ ++ +D RNID+LL+DD+QF Sbjct: 175 HLMQAIAHFILKNNPDYKVVYVSSETFTNELINSIKDDSTVDFRDKYRNIDILLVDDIQF 234 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L +S +Q++ ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 235 LAGKERTQEEFFHTFNTLHESNRQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKPDL 294 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + L I EV++++A + ++ REL+GA +++ S + Sbjct: 295 ETRIAILRK-----KADIENLTIPNEVVIYIANKIQSNIRELEGALVKVIAYSSLVDREI 349 Query: 389 TAEIADELLSHLVNTGETKKM--RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 ++A E L LVN + + IE I++++ YN+ D+ S +R + + PRQ+AM Sbjct: 350 DVDLAREALKDLVNNKKEANIEVDIERIKKIITADYNLRMEDMHSKKRTQNIAFPRQIAM 409 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YLS+ +T S P IG FG RDHTTV+HA K+++ +E + ++E L I Sbjct: 410 YLSRELTDFSLPHIGNEFGGRDHTTVIHAHNKIKEKIENEADFSNKIERLTDQIK 464 >gi|148982286|ref|ZP_01816693.1| chromosomal replication initiation protein [Vibrionales bacterium SWAT-3] gi|145960551|gb|EDK25908.1| chromosomal replication initiation protein [Vibrionales bacterium SWAT-3] Length = 465 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 154/476 (32%), Positives = 260/476 (54%), Gaps = 30/476 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRIQG---VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT-- 149 +L QE E+ + V+ P AS+P+ T+ + S +P L + Sbjct: 61 RLLQEYCGNDIPHLHFEVGSKRVSAPKPAAPASAPAPTRTAADVAAESSAPAQLQARKPV 120 Query: 150 -----------ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + S ++ + F+ F+EG SN++ L AA+ +A+ Y NP Sbjct: 121 HNTWRDEEPVDVDINHRSNVNPKHKFNNFVEGKSNQLGLAAARQVADNPGAAY-----NP 175 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LF++ GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R Sbjct: 176 LFLYGGTGLGKTHLLHAVGNAIVDGKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYR 235 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR Sbjct: 236 SVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFG 295 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G++V + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+ Sbjct: 296 WGLTVAIEPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNR 350 Query: 378 LVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 ++ +F +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R Sbjct: 351 VIANANFTGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSR 409 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 +V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ ++ E +K++ Sbjct: 410 SVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIAQLREESHDIKED 465 >gi|319407986|emb|CBI81640.1| chromosomal replication initiator protein DnaA [Bartonella schoenbuchensis R1] Length = 524 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 281/488 (57%), Positives = 358/488 (73%), Gaps = 8/488 (1%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTN 79 T + LE + FT V ++LK +VG + Y SWF RLK N+V LSVPT Sbjct: 37 GTSTLGEHPVILEEEGAAAFTRVMAQLKVRVGVEAYTSWFGRLKLSEYNRNLVKLSVPTA 96 Query: 80 FLKAWIKNRYLETITKLFQEEHSRIQGVEILVR---SVALPSVEKTASSPSITKLSPINT 136 FL++WI N Y +T L+Q+E+S I VE++VR V+ V KT S + NT Sbjct: 97 FLRSWINNHYGSLLTSLWQQENSAILRVEVIVRDLKRVSKNGVCKTNGSSVVAVPEEQNT 156 Query: 137 NISKSPII--LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + + K + + +FGSPLDSR+ F F+EG+SNRVAL AA+SIAE + + Sbjct: 157 SSLAESYVEHSAKNSQAGIFGSPLDSRYTFENFVEGASNRVALAAARSIAEGHK---SAL 213 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R NPLFIHASVGLGKTHLLQAIA A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K Sbjct: 214 RFNPLFIHASVGLGKTHLLQAIAAAALKRLTPARVIYLTAEYFMWRFATAIRDNNALSFK 273 Query: 255 DSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 + LR+IDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RS Sbjct: 274 EQLRDIDLLIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRS 333 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 RLQGGV++ + DYEMR +L+ RL +++++D + I+ ++L ++A+T+ SGR+++GA Sbjct: 334 RLQGGVALEIEAPDYEMRLKMLQQRLKVARQDDSAIEISNDILEYIAKTILGSGRDIEGA 393 Query: 375 FNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 FNQL+FR SF L+ E DELL HL +GE K++RIE+IQR VA+HYN+S+ DLLSNRR Sbjct: 394 FNQLLFRQSFESDLSLERVDELLGHLTRSGEPKRIRIEEIQRTVARHYNVSKQDLLSNRR 453 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RTVV+PRQVAMYL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+E Sbjct: 454 TRTVVKPRQVAMYLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLIYDDQTLAKELE 513 Query: 495 LLKRLISE 502 LLKRLI E Sbjct: 514 LLKRLIGE 521 >gi|26986755|ref|NP_742180.1| chromosomal replication initiation protein [Pseudomonas putida KT2440] gi|60392185|sp|P0A116|DNAA_PSEPK RecName: Full=Chromosomal replication initiator protein DnaA gi|60392186|sp|P0A117|DNAA_PSEPU RecName: Full=Chromosomal replication initiator protein DnaA gi|24981346|gb|AAN65644.1|AE016191_1 chromosomal replication initiator protein DnaA [Pseudomonas putida KT2440] gi|581460|emb|CAA32893.1| unnamed protein product [Pseudomonas putida] Length = 506 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 158/514 (30%), Positives = 256/514 (49%), Gaps = 61/514 (11%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E S I + I R + P A + S T K+ + ++ Sbjct: 63 LGENGSGIAPALSLLIGSRRSSAPRAAPNAPVSAAVAASLAQTQAHKTAPAAAVEPVAVA 122 Query: 154 --------------------------------------------FGSPLDSRFVFSTFIE 169 S L+ F F TF+E Sbjct: 123 AAEPVLVETSSRDSFDAMAEPAAAPPSGGGRAEQRTVQVEGALKHTSYLNRTFTFDTFVE 182 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +V Sbjct: 183 GKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKV 237 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 VYL +E F+ A++ N K R++D LLIDD+QF K Q EF H N+LL Sbjct: 238 VYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALL 297 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + + Sbjct: 298 EGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQA 352 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 K+ + + +A+ + ++ REL+GA +++ F +T E+ E L L+ K Sbjct: 353 KVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DK 411 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG R Sbjct: 412 LVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDMFGGR 471 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 DHTTVLHACRKINELKESDADIREDYKNLLRTLT 505 >gi|149202937|ref|ZP_01879908.1| chromosomal replication initiation protein [Roseovarius sp. TM1035] gi|149143483|gb|EDM31519.1| chromosomal replication initiation protein [Roseovarius sp. TM1035] Length = 448 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 170/468 (36%), Positives = 269/468 (57%), Gaps = 25/468 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + + +L+ VG + +W + L+F V + VPT FL ++ + E I Sbjct: 2 TQEQWGQLKQKLQQSVGQSNFKNWIEPLEFARVDDGVATFHVPTTFLGNYVSQHFGELIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ ++ V A S + + ++ + PI +I S Sbjct: 62 YQMSNLSPDVRRLQFRV---AANSGARPSRPATVASVEPIADSIVPS------------- 105 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 +PLD RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ Sbjct: 106 -APLDERFTFDSFVVGKPNELAHAAARRVAEC-----GPVTFNPLFLYGGVGLGKTHLMH 159 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA +P+L VVYL+AE FM+RF A+RD ++ K R++D+L++DD+QF+ GK Sbjct: 160 AIAWELKITRPDLNVVYLSAEQFMYRFVQALRDRKMMDFKSVFRSVDVLMVDDVQFIAGK 219 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D KQ+V +ADR P E+ +L+ RI+SRLQ G+ V L DYE+R Sbjct: 220 DSTQEEFFHTFNALVDQNKQIVISADRAPGEIANLEERIKSRLQCGLVVDLHPTDYELRL 279 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL++++ + + P L +++ VL +A ++T+ R L+GA +L S +T E+ Sbjct: 280 GILQSKVDRYRAQYPDLALSDGVLEFLAHRISTNVRVLEGAMTRLFAFASLVRKPITLEL 339 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L+ ++ +K+ IE+IQR V+ HYNI +D++ +R R RPRQVAMYL K M Sbjct: 340 TQDCLADVLRAS-ERKVSIEEIQRKVSDHYNIRLSDMIGPKRTRCYARPRQVAMYLCKQM 398 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGRRFG RDHTT++H V++++++ D + +++ELL+R + Sbjct: 399 TSRSLPEIGRRFGGRDHTTIMHGVKRIDELRIQDAQIAEDLELLRRTL 446 >gi|313496418|gb|ADR57784.1| DnaA [Pseudomonas putida BIRD-1] Length = 504 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 158/514 (30%), Positives = 256/514 (49%), Gaps = 61/514 (11%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 2 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 60 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E S I + I R + P A + S T K+ + ++ Sbjct: 61 LGENGSGIAPALSLLIGSRRSSAPRAAPNAPVSAAVAASLAQTQAHKTAPAAAVEPVAVA 120 Query: 154 --------------------------------------------FGSPLDSRFVFSTFIE 169 S L+ F F TF+E Sbjct: 121 AAEPVLVETSSRDSFDAMAEPAAAPPSGGGRAEQRTVQVEGALKHTSYLNRTFTFDTFVE 180 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +V Sbjct: 181 GKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKV 235 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 VYL +E F+ A++ N K R++D LLIDD+QF K Q EF H N+LL Sbjct: 236 VYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALL 295 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + + Sbjct: 296 EGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQA 350 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 K+ + + +A+ + ++ REL+GA +++ F +T E+ E L L+ K Sbjct: 351 KVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DK 409 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG R Sbjct: 410 LVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDMFGGR 469 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 470 DHTTVLHACRKINELKESDADIREDYKNLLRTLT 503 >gi|61212585|sp|Q6G526|DNAA_BARHE RecName: Full=Chromosomal replication initiator protein DnaA Length = 494 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 277/474 (58%), Positives = 355/474 (74%), Gaps = 6/474 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 21 EEEGAAAFARVMAQLKAQVGIEAYTSWFGRLKLAEYSRNLVKLSVPTAFLRSWINNHYGS 80 Query: 92 TITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +T L+++E+S I VE++VR V+ V ++P + + ++ + + Sbjct: 81 LLTNLWKQENSAILRVEVIVRGMKRVSKAVVCGKNAAPVVLEEKTASSFLENYTEHSVRG 140 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + +FGSPLDSR+ F +F+EGSSNRVAL AA+SIAE + +R NPLFIHASVGLG Sbjct: 141 VEAGIFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHK---SALRFNPLFIHASVGLG 197 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQAIA A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDM Sbjct: 198 KTHLLQAIAAAALKRLKPARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDM 257 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK IQ+EFCHLLN LLDSAKQVV AADRPPSELESLD R+RSRLQGGV++ + D Sbjct: 258 QFLQGKSIQNEFCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRLQGGVALEIEAPD 317 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YEMR +L+ RL ++Q++D + I++EVL ++A+T+ SGR+++GAFNQL+FR SF L Sbjct: 318 YEMRLEMLRQRLKVAQQDDNMIVISDEVLQYIAKTILGSGRDIEGAFNQLLFRQSFESDL 377 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E DE L HL +GE+K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQVAMYL Sbjct: 378 SLERIDEFLGHLTRSGESKRIRIEEIQRAVARHYNVSKQDLLSNRRTRTVVKPRQVAMYL 437 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 438 AKMLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 491 >gi|134093295|ref|YP_001098370.1| chromosomal replication initiation protein [Herminiimonas arsenicoxydans] gi|166214675|sp|A4G154|DNAA_HERAR RecName: Full=Chromosomal replication initiator protein DnaA gi|133737198|emb|CAL60241.1| Chromosomal replication initiator protein DnaA [Herminiimonas arsenicoxydans] Length = 460 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 135/469 (28%), Positives = 243/469 (51%), Gaps = 14/469 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S++L+ ++ P Y++W + L + ++ P F W+K ++ IT Sbjct: 2 ENFWQACSAQLEQELTPQQYSAWIKPLTPLDYEDGTLRIAAPNRFKLDWVKTQFASRITS 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + V+ ++ + + A + ++ + + PI +P Sbjct: 62 IAAQFWEVPVEVQFVLDPRLVAARRPAAQASVVSDRADDVPSNVLEPIPSNATDHTPRRD 121 Query: 156 -SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S +++ F +F+ G +N++A AA +A Y NPLF++ VGLGKTHL+ Sbjct: 122 QSRINTALTFDSFVTGKANQLARAAAIQVANNPGSSY-----NPLFLYGGVGLGKTHLIH 176 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + PN+++ Y+ AE ++ +A + + K ++DLLLIDD+QF GK Sbjct: 177 AIGNQVLADNPNVKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQFFGGK 236 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + + EMR Sbjct: 237 SRTQEEFFYAFEALIAAKKQIIITSDTYPKEITGMDDRLISRFDSGLTVAVEPPELEMRV 296 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + + +++V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 297 AIL-----LKKAVQEGVTFSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKDITIEV 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L L++ +++ +E+IQ+ VA +NI D+ S +R + RPRQ+AMYL+K + Sbjct: 352 VKDALKDLLSVQ-NRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMYLAKEL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ E+ +L++ + Sbjct: 411 TQKSLPEIGELFGGRDHTTVLHAVRKIAADRGKSPECNHELHVLEQTLK 459 >gi|148545260|ref|YP_001265362.1| chromosomal replication initiation protein [Pseudomonas putida F1] gi|166214693|sp|A5VWB8|DNAA_PSEP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|148509318|gb|ABQ76178.1| chromosomal replication initiator protein DnaA [Pseudomonas putida F1] Length = 505 Score = 471 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 158/513 (30%), Positives = 256/513 (49%), Gaps = 60/513 (11%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L++++ + +W + L+ + + + + P F+ W+ +YL + +L Sbjct: 4 ELWQQCVELLRDELPAQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E S I + I R + P A + S T K+ + ++ Sbjct: 63 LGENGSGIAPALSLLIGSRRSSAPRAAPNAPVSAAVAASLAQTQAHKTAPAAAVEPVAVA 122 Query: 154 -------------------------------------------FGSPLDSRFVFSTFIEG 170 S L+ F F TF+EG Sbjct: 123 AAEPVLVETSSRDSFDAMAEPAAAPPSGGRAEQRTVQVEGALKHTSYLNRTFTFDTFVEG 182 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VV Sbjct: 183 KSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVV 237 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 YL +E F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ Sbjct: 238 YLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLE 297 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 +QV+ +DR P E+E L+ R++SR G++V + + E R +IL + + + K Sbjct: 298 GGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAK 352 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 + + + +A+ + ++ REL+GA +++ F +T E+ E L L+ K Sbjct: 353 VELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKL 411 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RD Sbjct: 412 VSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDMFGGRD 471 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 HTTVLHACRKINELKESDADIREDYKNLLRTLT 504 >gi|94323531|gb|ABF17877.1| chromosomal replication initiator protein [Staphylococcus xylosus] Length = 455 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 150/470 (31%), Positives = 253/470 (53%), Gaps = 20/470 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + I+ V + + +V Y ++ + K + + +N + + F+ W+K+ Y+E Sbjct: 1 MSEKEIWERVLTLAQEKVSYPSYQTFLKDTKLYQLQNNEAIVVIDDPFVANWLKSNYVEI 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + E G EI+ +E S + +P + + Sbjct: 61 VQSALYEA----IGHEIMPVFYTEDELENLKPSKNKETNEAERFKKEYTPGV----DEAV 112 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + G ++ F TF+ G NR A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 113 IGGEQFNTHNTFETFVIGPGNRFPHAASLAVAEAPAQAY-----NPLFIYGGVGLGKTHL 167 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + P+ +V+Y ++E F F +IRDN ++ RNID+LLIDD+QF+Q Sbjct: 168 MHAIGHYVLANNPDAKVIYTSSEKFTNEFIKSIRDNKTERFREKYRNIDVLLIDDIQFIQ 227 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L + KQ+V ++DRPP E+ L+ R+RSR + G+ V + DYE Sbjct: 228 NKEQTQEEFFHTFNELHQANKQIVISSDRPPKEIAKLEDRLRSRFEWGLIVDITPPDYET 287 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ ++ + L+I E L ++A + ++ REL+GA +++ +T Sbjct: 288 RMAILQKKIG-----EENLDIPTEALTYIANQIQSNIRELEGALTRVLAFSKLQGQPITT 342 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ L ++ +KK+ I+DIQ++V ++Y++ D + +R +++ PRQ+AMYLS+ Sbjct: 343 ELTAAALKDIIQAPRSKKITIQDIQKIVGQYYSVKIEDFSAKKRTKSIAYPRQIAMYLSR 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTV+HA K+ K ++ D T K+EVE L++ I Sbjct: 403 ELTDFSLPKIGEEFGGRDHTTVIHAHEKIVKDIQNDPTFKQEVENLEKEI 452 >gi|328541625|ref|YP_004301734.1| Chromosomal replication initiator protein dnaA [polymorphum gilvum SL003B-26A1] gi|326411377|gb|ADZ68440.1| Chromosomal replication initiator protein dnaA [Polymorphum gilvum SL003B-26A1] Length = 491 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 223/486 (45%), Positives = 309/486 (63%), Gaps = 30/486 (6%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V RL+ ++G DV++SWF R+ V LSVPT FLK WI++ Y + + L+Q Sbjct: 12 WNRVKKRLRAELGDDVFSSWFARVDLEEHCDGTVRLSVPTRFLKQWIQSNYRDRLMGLWQ 71 Query: 99 EEHSRIQGVEILVRSVALPSVEKTA-SSPSITKLSPINTNISKSPIILGKQTISP----- 152 E + +E+ VR P T +SP I PI Sbjct: 72 RECEGVHRIELTVRGAMRPRQASTPLTSPLPVAKRAIAPANDVRPISFADTNAVAAAQAA 131 Query: 153 ----------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + G+ LD ++ F TF+EG SN +AL AA+ +A V Sbjct: 132 TAALGRGEADAGARDVLQGAALDPKYTFETFVEGESNGLALAAAKQVA-----SGGAVTF 186 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL++HA+VGLGKTHL+QA+A + R +V+YLTAE+FM+RF +A++ AL K++ Sbjct: 187 NPLYLHAAVGLGKTHLMQAVA--TKARASGRKVLYLTAEHFMYRFVAALKAQSALAFKET 244 Query: 257 LRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 LR IDLLLIDDMQFL GK +Q EFCH LN+L+D A+QV+ AADR PSEL++LD R+RSRL Sbjct: 245 LRTIDLLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRAPSELDTLDDRVRSRL 304 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 GG+ V + D+ +R +IL R+A +K P + + VL +VAR V +SGR+L+GA N Sbjct: 305 SGGLVVGIAEPDFALRRNILGARVATLKKSYPNFTVPDGVLDYVARHVVSSGRDLEGALN 364 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 +LV + +T ++A+ L L+ T E ++++IEDIQR+V+KHYN+++ DLLS RR Sbjct: 365 RLVAHNQLTNQPVTQDMAELTLRDLIRTSEPRRVKIEDIQRVVSKHYNVTKADLLSARRT 424 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 RT+VRPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRKVE+M DI L +E+EL Sbjct: 425 RTIVRPRQIAMYLAKVMTPRSLPEIGRRFGNRDHTTVLHAVRKVEEMARADIGLAQELEL 484 Query: 496 LKRLIS 501 LKR++ Sbjct: 485 LKRMLD 490 >gi|15595199|ref|NP_064721.1| chromosomal replication initiation protein [Pseudomonas aeruginosa PAO1] gi|116053721|ref|YP_788156.1| chromosomal replication initiation protein [Pseudomonas aeruginosa UCBPP-PA14] gi|218888747|ref|YP_002437611.1| chromosomal replication initiation protein [Pseudomonas aeruginosa LESB58] gi|254243115|ref|ZP_04936437.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 2192] gi|14194675|sp|Q9I7C5|DNAA_PSEAE RecName: Full=Chromosomal replication initiator protein DnaA gi|122262144|sp|Q02V80|DNAA_PSEAB RecName: Full=Chromosomal replication initiator protein DnaA gi|226735834|sp|B7V0N6|DNAA_PSEA8 RecName: Full=Chromosomal replication initiator protein DnaA gi|9945819|gb|AAG03391.1|AE004440_1 chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa PAO1] gi|11067000|gb|AAG28797.1|AF229442_1 DnaA [Pseudomonas aeruginosa] gi|115588942|gb|ABJ14957.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa UCBPP-PA14] gi|126196493|gb|EAZ60556.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 2192] gi|218768970|emb|CAW24728.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa LESB58] Length = 514 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 160/522 (30%), Positives = 257/522 (49%), Gaps = 69/522 (13%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY------- 89 ++ L++++ + +W + L+ + + + + P F+ W+ +Y Sbjct: 4 ELWQQCVDLLRDELPSQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 62 Query: 90 --------LETITKLFQEEHSRIQGVEIL-------------------VRSVALPSVEKT 122 L ++ L + SR I+ A P V Sbjct: 63 LGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPR 122 Query: 123 ASSPSITKLSPINTNI--SKSPIILGKQTISPV-------------------FGSPLDSR 161 P +T ++++ + P I P S L+ Sbjct: 123 EELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRT 182 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N + Sbjct: 183 FTFENFVEGKSNQLARAAAWQVADNLKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLL 237 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF Sbjct: 238 KKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEF 297 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL Sbjct: 298 FHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL---- 353 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSH 399 + + E K+ + + +A+ + ++ REL+GA +++ F +T E+ E L Sbjct: 354 -MKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKD 412 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L+ K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PE Sbjct: 413 LLALQ-DKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPE 471 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 472 IGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 513 >gi|114769644|ref|ZP_01447254.1| chromosomal replication initiation protein [alpha proteobacterium HTCC2255] gi|114549349|gb|EAU52231.1| chromosomal replication initiation protein [alpha proteobacterium HTCC2255] Length = 451 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 170/466 (36%), Positives = 269/466 (57%), Gaps = 22/466 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 I+ I+ L+ VG + +W L+ S+ + + PT F+ W+ Y ++I Sbjct: 4 EIWPIIKLALRKTVGEAAFTNWINPLELTSINASKANFVTPTKFIGDWVDRNYGDSIKFE 63 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F ++ I+ + V K++P + K K + + G+ Sbjct: 64 FAKQGLDIERLVFSVNME--------------PKIAPTKKSSIKPESKNTKTGSTDLPGA 109 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LD R+ F F+ G N +A AA+ ++E V NPLF+H VGLGKTHL+ AI Sbjct: 110 SLDPRYTFDNFVVGKPNELAHAAARRVSEG-----GDVSFNPLFLHGGVGLGKTHLMHAI 164 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 A KR PN RV+YL+AE FM+RF A+R ++ K+ R++D+L++DD+QF+ GK Sbjct: 165 AWEIKKRDPNARVLYLSAEQFMYRFVQALRFKDTISFKEMFRSVDVLMVDDVQFIAGKSS 224 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQV+ + DR P ++E L+ RI+SRLQ G+ V + DYE+R I Sbjct: 225 TQEEFFHTFNALIDQNKQVIISGDRAPVDMEQLEDRIKSRLQWGLVVDVHPTDYELRLGI 284 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L+++ + + + ++ VL +A+ ++++ R L+GA +L S +T E+A Sbjct: 285 LQSKQESQARYNSTVEVSPGVLEFMAQRISSNVRVLEGALTRLYAFGSLVGRPVTLEMAQ 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E LS ++ +K+ I++I R V HY ++ D+LS RR R++ RPRQVAMYLSK +T Sbjct: 345 ESLSDILR-ATDRKVTIDEIIRKVTDHYGVNLTDMLSARRTRSIARPRQVAMYLSKKLTS 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +S PEIGRRFG RDHTTV+HAV+K+E++ D + K++E+L+R++ Sbjct: 404 KSLPEIGRRFGKRDHTTVIHAVKKIEELQSIDNQIAKDIEVLRRML 449 >gi|256751455|ref|ZP_05492333.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus CCSD1] gi|256749674|gb|EEU62700.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus CCSD1] Length = 443 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 255/473 (53%), Gaps = 34/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + I+ + +K+++ P Y +W +K +++ +++ LS P F K I RY+ Sbjct: 1 MYGDHRQIWERIVEVIKSELTPTSYNTWLVHIKPLAIIDDVLFLSTPNTFTKNIINGRYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + +++ ++IL K + I + Sbjct: 61 NIIYDAASKATNKLYEIKILSEDEEEYREIKES--------------------IEKENLT 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKT Sbjct: 101 ESTTLSTLNPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + K Q +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF Sbjct: 156 HLMHAIGHFINKHQSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q EF H N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DY Sbjct: 216 IAKKERTQEEFFHTFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDY 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK + + LNI +EVL +VA + ++ REL+GA ++V + + Sbjct: 276 ETRIAILKK-----KAQTENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKTNI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A L +V+ T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL Sbjct: 331 DLELAKHALKEIVSNK-TREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IG FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 390 ARELTDLSLPKIGEEFG-KDHTTVIHAYEKISNEIKQDELLSRQIEELKKRIK 441 >gi|313111477|ref|ZP_07797278.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 39016] gi|310883780|gb|EFQ42374.1| chromosomal replication initiator protein DnaA [Pseudomonas aeruginosa 39016] Length = 512 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 160/522 (30%), Positives = 257/522 (49%), Gaps = 69/522 (13%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY------- 89 ++ L++++ + +W + L+ + + + + P F+ W+ +Y Sbjct: 2 ELWQQCVDLLRDELPSQQFNTWIRPLQVEA-EGDELRVYAPNRFVLDWVNEKYLGRLLEL 60 Query: 90 --------LETITKLFQEEHSRIQGVEIL-------------------VRSVALPSVEKT 122 L ++ L + SR I+ A P V Sbjct: 61 LGERGEGQLPALSLLIGSKRSRTPRAAIVPSQTHVAPPPPVAPPPAPVQPVSAAPVVVPR 120 Query: 123 ASSPSITKLSPINTNI--SKSPIILGKQTISPV-------------------FGSPLDSR 161 P +T ++++ + P I P S L+ Sbjct: 121 EELPPVTTAPSVSSDPYEPEEPSIDPLAAAMPAGAAPAVRTERNVQVEGALKHTSYLNRT 180 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N + Sbjct: 181 FTFENFVEGKSNQLARAAAWQVADNLKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLL 235 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF K Q EF Sbjct: 236 KKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEF 295 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R +IL Sbjct: 296 FHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL---- 351 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSH 399 + + E K+ + + +A+ + ++ REL+GA +++ F +T E+ E L Sbjct: 352 -MKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIELIRESLKD 410 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 L+ K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PE Sbjct: 411 LLALQ-DKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPE 469 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 470 IGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 511 >gi|83855142|ref|ZP_00948672.1| chromosomal replication initiation protein [Sulfitobacter sp. NAS-14.1] gi|83941665|ref|ZP_00954127.1| chromosomal replication initiation protein [Sulfitobacter sp. EE-36] gi|83842985|gb|EAP82152.1| chromosomal replication initiation protein [Sulfitobacter sp. NAS-14.1] gi|83847485|gb|EAP85360.1| chromosomal replication initiation protein [Sulfitobacter sp. EE-36] Length = 452 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 171/467 (36%), Positives = 268/467 (57%), Gaps = 21/467 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ +T + RL VG + + +W L + I L VPTNF ++ + + + Sbjct: 3 QAEWTTIRDRLLKTVGQNNFTTWIDPLTVGPIEDGICTLFVPTNFFGNYVSQNFADLLLH 62 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 Q E I ++ V P+ A + + N S + Sbjct: 63 EMQSEDISISRLKFAVAPQDKPAAIDPAPARPKPAAAAQPAN-------------SQINA 109 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PLD+RF F F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ A Sbjct: 110 APLDARFSFDNFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IA R+P L V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Sbjct: 165 IAQELQVRKPELNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKD 224 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R Sbjct: 225 STQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLG 284 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+N++ +K P L + VL +A +TT+ R L+GA +L S + ++ Sbjct: 285 ILQNKVEAQRKNYPGLEVEAGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREINMDLT 344 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L+ ++ +K+ +E+IQR V++HYNI +D++ +R+R+ RPRQVAMYL K MT Sbjct: 345 QDCLADVLRAS-ERKVSVEEIQRKVSEHYNIRLSDMVGPKRLRSYARPRQVAMYLCKKMT 403 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RS PEIGRRFG RDHTTV+H V+++E++ + D + +++ELL+R + Sbjct: 404 SRSLPEIGRRFGGRDHTTVMHGVKRIEELKQNDGQIAEDLELLRRSL 450 >gi|296131551|ref|YP_003638798.1| chromosomal replication initiator protein DnaA [Thermincola sp. JR] gi|296030129|gb|ADG80897.1| chromosomal replication initiator protein DnaA [Thermincola potens JR] Length = 451 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 144/467 (30%), Positives = 253/467 (54%), Gaps = 27/467 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 I+ + + QV + +W + +K + ++ + + VP +F K W+++RY + I Sbjct: 7 HEIWQKTLNAIAKQVSKPSFETWLKYIKPVNFVNETMIIEVPNDFAKDWLESRYTDLIKS 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + ++ V +LP+ S I N ++ Sbjct: 67 ILSDILNKEVSVTF-----SLPNEIIDVSDYLPEYNIDIKKNYNE----------DLSIS 111 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F TF+ G+SNR A + NPLFI+ VGLGKTHL+QA Sbjct: 112 THLNPKYTFDTFVVGNSNRF-----AHAAALAVAEAPAKAYNPLFIYGGVGLGKTHLMQA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + ++++ +LRVVY+++E F ++IRD+ ++ ++ RN+D+LLIDD+QFL GK Sbjct: 167 IGHYILEQEYSLRVVYVSSEKFTNELINSIRDDKTVDFRNKYRNMDILLIDDIQFLAGKE 226 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R + Sbjct: 227 RTQEEFFHTFNALYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQPPDLETRIA 286 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+ + + L + +V++++A + ++ REL+GA +++ S +T ++A Sbjct: 287 ILRK-----KAQLENLMVPNDVMLYIANRIQSNIRELEGALIRVMAYSSLTNSEITTDLA 341 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L ++ K++ IE IQ++VA ++++ D + +R R V PRQ+AMYL + +T Sbjct: 342 AEALKDIIPMQAPKQINIEIIQKIVADYFSMRVEDFKAKKRTRAVAFPRQIAMYLCRELT 401 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG FG RDHTTV+HA K+ L DI L+ ++ L+ I Sbjct: 402 DNSLPKIGEEFGGRDHTTVIHAHEKISNDLNNDIKLQSIIKELQHRI 448 >gi|167036432|ref|YP_001664010.1| chromosomal replication initiation protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038676|ref|YP_001661661.1| chromosomal replication initiation protein [Thermoanaerobacter sp. X514] gi|300913764|ref|ZP_07131081.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X561] gi|307723219|ref|YP_003902970.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X513] gi|320114858|ref|YP_004185017.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|226735859|sp|B0KAG0|DNAA_THEP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735860|sp|B0K0W8|DNAA_THEPX RecName: Full=Chromosomal replication initiator protein DnaA gi|166852916|gb|ABY91325.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X514] gi|166855266|gb|ABY93674.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300890449|gb|EFK85594.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X561] gi|307580280|gb|ADN53679.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter sp. X513] gi|319927949|gb|ADV78634.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 443 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 255/473 (53%), Gaps = 34/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + I+ + +K+++ P Y +W +K +++ +++ LS P F K I RY+ Sbjct: 1 MYGDHRQIWERIVEVIKSELTPTSYNTWLVHIKPLAIIDDVLFLSTPNTFTKNIINGRYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + +++ ++IL K + I + Sbjct: 61 NIIYDAASKATNKLYEIKILSEDEEEYREIKES--------------------IEKENLT 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKT Sbjct: 101 ESTTLSTLNPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + K Q +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF Sbjct: 156 HLMHAIGHFINKHQSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q EF H N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DY Sbjct: 216 IAKKERTQEEFFHTFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDY 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK + + LNI +EVL +VA + ++ REL+GA ++V + + Sbjct: 276 ETRIAILKK-----KAQTENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKANI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A L +V+ T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL Sbjct: 331 DLELAKHALKEIVSNK-TREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IG FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 390 ARELTDLSLPKIGEEFG-KDHTTVIHAYEKISNEIKQDELLSRQIEELKKRIK 441 >gi|221640841|ref|YP_002527103.1| chromosomal replication initiation protein [Rhodobacter sphaeroides KD131] gi|221161622|gb|ACM02602.1| Chromosomal replication initiator protein dnaA [Rhodobacter sphaeroides KD131] Length = 447 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 171/450 (38%), Positives = 265/450 (58%), Gaps = 18/450 (4%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 L +VG + + +W + L+ + + VPT F W++ + + I E S Sbjct: 2 REGLLKRVGRNNFVTWIEPLRLMGLDEGVARFEVPTLFFGDWVQRNFADHIRMRLTEAGS 61 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 ++ +E V + +++ ++ + + + G+PLD+RF Sbjct: 62 PVERLEFAVSNTPRAPLKEVKAAAPAASPARARPAPPEEDLR----------GAPLDARF 111 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ K Sbjct: 112 TFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHAIAHDLQK 166 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 RQP RV+YL+AE FM+RF A+R+ L K+ R++D+L++DD+QF+ GK Q EF Sbjct: 167 RQPGARVLYLSAEQFMYRFVQALREREILGFKELFRSVDVLMVDDVQFIAGKDSTQEEFF 226 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L+D KQ+V +ADR P E++ L+ RI+SRLQ G+ V L DYE+R IL+ + Sbjct: 227 HTFNALVDQNKQIVISADRAPGEIKDLEERIKSRLQCGLVVDLHPTDYELRLGILQQKAD 286 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 +++ L I + VL +A +TT+ R L+GA +L S +T ++A + L+ + Sbjct: 287 FYREQYRGLVIADGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREITLDLAQDCLADI 346 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + +K+ IE+IQR VA+HYNI +D++ +R+RT+ RPRQVAMYL+K +TPRS PEI Sbjct: 347 LRAS-DRKVTIEEIQRKVAEHYNIRLSDMIGPKRLRTIARPRQVAMYLAKQLTPRSLPEI 405 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 GRRFG RDHTT++H VRK+E+++ TD L Sbjct: 406 GRRFGGRDHTTIMHGVRKIEELMATDSQLA 435 >gi|164686446|ref|ZP_02210474.1| hypothetical protein CLOBAR_00011 [Clostridium bartlettii DSM 16795] gi|164604457|gb|EDQ97922.1| hypothetical protein CLOBAR_00011 [Clostridium bartlettii DSM 16795] Length = 451 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 143/468 (30%), Positives = 253/468 (54%), Gaps = 27/468 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ S++ +K +V + ++F+ N + L P F + ++ RYL Sbjct: 1 MDIVSLWKKTLQLIKGEVASASFETFFKNTVPIETDSNELTLLAPNEFAEDILRTRYLNL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + S ++I+ S + + +P+ T+ + I Sbjct: 61 IESCLSQLTSNKFEIKIISDSNEV-------------EQNPLKTSNNNHNINNNSNNNII 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F TF+ G+SNR A A ++AE + Y NPLF++ VGLGKTHL Sbjct: 108 RNYPRLNPKYTFDTFVIGNSNRFAHAACVAVAESPAKAY-----NPLFLYGGVGLGKTHL 162 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI ++ +K Q + +VVY+++E F ++I+ + ++ RN+D+LLIDD+QF+ Sbjct: 163 MHAIGHSIMKEQNDAKVVYVSSEKFTNELINSIKSDKNEEFRNKYRNVDILLIDDIQFIA 222 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E Sbjct: 223 GKEGTQEEFFHTFNALHEANKQIIISSDRPPKEIPTLEDRLRSRFEMGLIADIQPPDFET 282 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +ILK + + ++I EV+ ++A + ++ REL+GA ++V S ++ Sbjct: 283 RIAILKT-----KAQIENIDIPNEVMNYIATYIKSNIRELEGALTRVVAYSSLINKDISY 337 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L +V T E++++ + I+ V+ + I +D S +R R + PRQ+AMYLS+ Sbjct: 338 DLAVEALKDIVTTSESQEISVNRIKEKVSTTFGIKMDDFNSKKRTRAIAYPRQIAMYLSR 397 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK--MLETDITLKKEVELL 496 +T S P+IG FG RDHTTV+HA K+ K LE + LK++++ + Sbjct: 398 ELTDLSLPKIGNEFGGRDHTTVIHAHDKISKDLELEKNSELKEKIDKI 445 >gi|315634815|ref|ZP_07890097.1| ribosomal subunit interface protein [Aggregatibacter segnis ATCC 33393] gi|315476367|gb|EFU67117.1| ribosomal subunit interface protein [Aggregatibacter segnis ATCC 33393] Length = 453 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 151/473 (31%), Positives = 250/473 (52%), Gaps = 23/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S++ +L++++ D + W L+ + NI+ L F++ W+ + YL Sbjct: 1 MENQPNSLWQNCLLQLQDKIPTDDFKIWLYPLQAETSASNIL-LYASNAFVQKWVIDNYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT + ++ + ++ + P+ K+ S K T Sbjct: 60 PLITDIARQTSANPNLSVSVIEGI----------KPTAPKVEKPTKKQSAVGFSEEKSTN 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+++ VF F+EG SN++A AQ +A+ NPLF++ GLGKT Sbjct: 110 KTPYHSNLNTKLVFENFVEGKSNQLARAVAQKVADNPGE----QTANPLFLYGGTGLGKT 165 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N I P RVVY+ +E F+ + + IRDN K R++D LL+DD+QF Sbjct: 166 HLLHAIGNGIIANNPEARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQF 225 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H+ N+L + +Q++ +DR P E+E ++ R++SR G++ + D Sbjct: 226 FSDKEKTQEEFFHIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDL 285 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + E+ +++ +V + + + T+ REL+GA N++ F + Sbjct: 286 ETRVAIL-----MKKAEENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPI 340 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L ++ K + +++IQ++VA++Y I +DL S R R+V RPRQVAM L Sbjct: 341 TIDFVRETLKDMLALQ-DKLVTVDNIQKVVAEYYRIKVSDLKSKNRSRSVARPRQVAMAL 399 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T RS PEIG+ FGDRDHTTVLHA R + +TD ++++ L R +S Sbjct: 400 AKELTNRSLPEIGKSFGDRDHTTVLHACRTIAGFRDTDPNIQEDWANLIRTLS 452 >gi|312112796|ref|YP_004010392.1| chromosomal replication initiator protein DnaA [Rhodomicrobium vannielii ATCC 17100] gi|311217925|gb|ADP69293.1| chromosomal replication initiator protein DnaA [Rhodomicrobium vannielii ATCC 17100] Length = 497 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 206/492 (41%), Positives = 296/492 (60%), Gaps = 14/492 (2%) Query: 23 NVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK 82 N+ + + E + + SRL+ ++G DV+ SWF R++ S +V +SVPT FL+ Sbjct: 5 NLSTTSSIEQTSIEHKWRRIQSRLRAELGEDVFTSWFGRVELDSCDGRVVQVSVPTKFLR 64 Query: 83 AWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTAS-----------SPSITKL 131 W+++ Y + + E + + +E VR L VEK AS T Sbjct: 65 NWLQSHYSDKLLACCGTELNGVNRLEFRVRQPHLAPVEKKASPTASIAESTTPKAQTTPS 124 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 S + + +P+ G+ + GSPLD R+ F +F+ GS NR+A AA +AE S Sbjct: 125 STVPLRVISTPVRDGRTGLEGFEGSPLDPRYTFQSFVVGSPNRLAHAAAFQVAE--STPE 182 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 ++ NPL+IHA VG+GKTHLL AIA R PN +V+YLTAE FM+ FA A++ A Sbjct: 183 QPLKYNPLYIHARVGMGKTHLLHAIAWEMKARNPNAKVLYLTAERFMYSFAEALQTRDAP 242 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K+ LR IDLL+IDDM+FLQG+ Q EFCH LNSL+D KQVV AAD P LES D R Sbjct: 243 AFKEKLRTIDLLIIDDMEFLQGRTFQQEFCHTLNSLIDGGKQVVVAADCAPLLLESFDAR 302 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRL GG+ + D+++R IL+ R A + +VL ++A +T +GREL Sbjct: 303 MRSRLSGGLVAEMSALDFDLRLKILQRRAAEKISLSRGFEVPGDVLEYLATQLTENGREL 362 Query: 372 DGAFNQLVF-RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +GA +L +T + A+ + L+ + E K+++I+DI R+VAKHY + R DLL Sbjct: 363 EGAITRLHATWQLTGEKVTVDAAENTIGDLIRSKEPKRVKIDDILRIVAKHYGVQRGDLL 422 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 S+RR +++VRPRQ+ MYL+K +T RS PEIGRRFG RDHTTVLHA+RK+E + + D LK Sbjct: 423 SSRRNQSIVRPRQIGMYLAKTLTSRSLPEIGRRFGGRDHTTVLHAIRKIESLKQADGVLK 482 Query: 491 KEVELLKRLISE 502 E++ L R++ + Sbjct: 483 DELDSLSRMLKD 494 >gi|258513367|ref|YP_003189589.1| chromosomal replication initiator protein DnaA [Desulfotomaculum acetoxidans DSM 771] gi|257777072|gb|ACV60966.1| chromosomal replication initiator protein DnaA [Desulfotomaculum acetoxidans DSM 771] Length = 446 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 151/472 (31%), Positives = 260/472 (55%), Gaps = 30/472 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N ++I+ + +KN+V Y W L + +N++ + V NF K WI +RY Sbjct: 3 NTNVKNIWEELLISIKNKVSQQSYDLWINSLNPIGLHNNVLTIEVSDNFTKDWINDRYYP 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + + ++ + VE S S+ K+ +I + Sbjct: 63 LLKSNLR----NVLKTDTDIQFILAAEVENYLSQHSLEKVEEAKEDIEYN---------- 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + + S++ F TF+ G SNR A A ++AE + Y NPLFI+ VGLGKTH Sbjct: 109 ---TNHIKSKYTFDTFVVGDSNRFAHAACFAVAESPAKSY-----NPLFIYGGVGLGKTH 160 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AIA+ + + +VVY+T+E F ++ RD+ + ++ R++++LLIDD+QFL Sbjct: 161 LMHAIAHYILTQGTGSKVVYVTSEKFTNELINSFRDDQTIKFRNKYRSMNILLIDDIQFL 220 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + DYE Sbjct: 221 AGKERTQEEFFHTFNTLYEANKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDIQAPDYE 280 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL+ + + KL I +EV+ +A + ++ REL+G +++ SF + Sbjct: 281 TRIAILRK-----KAQVDKLYIPDEVINFIATKIKSNIRELEGCLIRIIAYASFTKKEMN 335 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A+++L ++N TK++ +E IQ+ +A+H+ I +L + R RT+ PRQ+AMYL+ Sbjct: 336 VELAEQVLKDILNPK-TKQITVELIQKSIAEHFEIKSEELKAKNRSRTISHPRQIAMYLA 394 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IG FG RDHTTVLHA K+++ ++ D L+ ++ L + Sbjct: 395 RELTDLSLPKIGEAFGGRDHTTVLHAHEKIKEQIKKDGKLENTLKELINKLQ 446 >gi|264676137|ref|YP_003276043.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni CNB-2] gi|299530928|ref|ZP_07044342.1| chromosomal replication initiation protein [Comamonas testosteroni S44] gi|262206649|gb|ACY30747.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni CNB-2] gi|298721149|gb|EFI62092.1| chromosomal replication initiation protein [Comamonas testosteroni S44] Length = 468 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 144/469 (30%), Positives = 252/469 (53%), Gaps = 15/469 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 ++++ + +L ++ + +W + L + V + V F WI+ +Y I+ Sbjct: 11 QALWQVCVEQLGQELPEQQFNTWIKPLTALVAEDFSKVTVYVANRFKLDWIRAQYAGRIS 70 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + + + +E+ + V PS T+ + T+ P + ++ +PVF Sbjct: 71 AMLESLYGQPVTLELALAQRES-VVRTYVRPPSSTQQAAPQTHNVAVPTVTSEEASAPVF 129 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ F T +EG++NR+A +AA +A H Y NPLFI+ VGLGKTHL+ Sbjct: 130 RTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLY-----NPLFIYGGVGLGKTHLVH 184 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N +K +P+ +++Y+ AE F+ A + K+ ++DLLLIDD+QF K Sbjct: 185 AVGNQLLKDKPDAKILYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANK 244 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR Sbjct: 245 DRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRV 304 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL I++ ++ EEV VA+ V ++ REL+GA +++ F ++ ++ Sbjct: 305 AIL-----INKARAENADMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQL 359 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 360 AREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKEL 418 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ +T+ L +++ +L++ + Sbjct: 419 TQKSLPEIGELFGGRDHTTVLHAVRKIAGERQTNTELNQQLHVLEQTLK 467 >gi|326390364|ref|ZP_08211923.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus JW 200] gi|325993641|gb|EGD52074.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter ethanolicus JW 200] Length = 443 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 255/473 (53%), Gaps = 34/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + I+ + +K+++ P Y +W +K +++ +++ LS P F K I RY+ Sbjct: 1 MYGDHRQIWERIVEVIKSELTPTSYNTWLVHIKPLAIIDDVLFLSTPNTFTKNIINGRYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + +++ ++IL K + I + Sbjct: 61 NIIYDAASKATNKLYEIKILSEDEEEYREIKES--------------------IEKENLT 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKT Sbjct: 101 ESTTLSTLNPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + K Q +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF Sbjct: 156 HLMHAIGHFINKHQSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q EF H N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DY Sbjct: 216 IAKKERTQEEFFHTFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDY 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +ILK + + LNI +EVL +VA + ++ REL+GA ++V + + Sbjct: 276 ETRIAILKK-----KAQSENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKSNI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A L +V+ T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL Sbjct: 331 DLELAKHALKEIVSNK-TREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IG FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 390 ARELTDLSLPKIGEEFG-KDHTTVIHAYEKISSEIKQDELLSRQIEELKKRIK 441 >gi|81251057|gb|ABB69864.1| DNA replication initiator protein [Nitrosospira sp. TCH711] Length = 476 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 140/482 (29%), Positives = 244/482 (50%), Gaps = 27/482 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN---IVHLSVPTNFLKAWIKNRYLE 91 ++ + +N++ + +W + L+ + ++ L P F+ W+K+ +L Sbjct: 4 PDTFWLACLEYFENELSAQQFNTWIKPLRLQLSDDSPEPVLTLIAPNRFVLQWVKDNFLS 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKT-------ASSPSITKLSPINTNISKSPI- 143 IT++ + +R + + + PS + S P + K+P Sbjct: 64 GITQMAENHFARPVQLRLELAGQVAPSPSPSIGGNNGMDSRPVTAVFDAPTGSPQKAPKD 123 Query: 144 ---ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + + + L+ F F+TF+ G +N++A A +AE Y NP F Sbjct: 124 TKDVKDTKEKQEKNPTRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFF 178 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHL+QAI N ++ P+ +V Y+ +E ++ A + K ++ Sbjct: 179 IYGGVGLGKTHLIQAIGNFVVEHNPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSL 238 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G Sbjct: 239 DLLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWG 298 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + EMR +IL + + + ++E V +A+ + ++ REL+GA ++V Sbjct: 299 LTVAVEPPELEMRVAIL-----LKKALMEDIILDESVAFFIAKHIRSNVRELEGALKRVV 353 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 F L+ E+A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V Sbjct: 354 AYSRFTGHALSLELAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRSRVV 412 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 413 ARPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNTLLH 472 Query: 499 LI 500 ++ Sbjct: 473 IL 474 >gi|295115474|emb|CBL36321.1| chromosomal replication initiator protein DnaA [butyrate-producing bacterium SM4/1] Length = 456 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 139/470 (29%), Positives = 255/470 (54%), Gaps = 31/470 (6%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + +K + + + +W + +S+ N + + VP +++ +Y +T Sbjct: 9 WEDILLHIKEEHELTDVSFKTWLLPTEAYSMKGNTLQILVPDIHFLGYMQKKYGFLLTVA 68 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E V+ + R E+ + + ++ + ++ + + + Sbjct: 69 IAEITGIECQVDFITREQIKEEPEEVSENQLLSHSTDVDQQV--------------IQNA 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ R+ F TF+ G++N +A A+ ++AE Y NPLFI+ VGLGKTHL+ +I Sbjct: 115 NLNPRYTFDTFVVGANNNLAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSI 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQG 273 + ++ P +++Y+T+E F AIR+ ++ RN D+LLIDD+QF+ G Sbjct: 170 GHFILQNNPKAKILYVTSEKFTNELIDAIRNKNNISTTEFREKYRNNDVLLIDDIQFIIG 229 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R Sbjct: 230 KESTQEEFFHTFNALYEAKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETR 289 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+ ++E NI+ EV+ ++A V ++ REL+GA ++V +T E Sbjct: 290 MAILRK-----KEELEGYNIDNEVIKYIATHVKSNIRELEGALTKIVALSKLNKREITTE 344 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+E L L++ G +++ E I ++V+ H+ I+ D+ S +R + +V PRQ+AMYL + Sbjct: 345 LAEEALKDLISPGGAREITPELIIQVVSDHFGITPADISSKKRNKEIVYPRQIAMYLCRT 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT IG+ GDRDHTT++H K+ +E + +L+ +E+LK+ +S Sbjct: 405 MTGTPLQGIGKYLGDRDHTTIIHGAEKITADMEKNESLRNTIEVLKKKLS 454 >gi|81251049|gb|ABB69858.1| DNA replication initiator protein [Nitrosospira sp. HBN8222A] Length = 476 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 140/482 (29%), Positives = 242/482 (50%), Gaps = 27/482 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN---IVHLSVPTNFLKAWIKNRYLE 91 ++ + +N++ + +W + L+ + ++ L P F+ W+K+ +L Sbjct: 4 PDTFWLACLEYFENELSAQQFNTWIKPLRLQLSDDSPEPVLTLIAPNRFVLQWVKDNFLS 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKT-------ASSPSITKLSPINTNISKSPII 144 IT++ + +R + + + PS + S P + K+P Sbjct: 64 GITQMAENHFARPVQLRLELAGQVAPSASPSIGGNNGMDSRPVTAVFDAPTGSPQKAPKD 123 Query: 145 LGKQ----TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + L+ F F+TF+ G +N++A A +AE Y NP F Sbjct: 124 TKDTKDTKEKQEKNPTRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFF 178 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHL+QAI N ++ P+ +V Y+ +E ++ A + K ++ Sbjct: 179 IYGGVGLGKTHLIQAIGNFVVEHNPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSL 238 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G Sbjct: 239 DLLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWG 298 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + EMR +IL + + + ++E V +A+ + ++ REL+GA ++V Sbjct: 299 LTVAVEPPELEMRVAIL-----LKKALMEDIILDESVAFFIAKHIRSNVRELEGALKRVV 353 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 F L+ E+A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V Sbjct: 354 AYSRFTGHALSLELAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRSRVV 412 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 413 ARPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNTLLH 472 Query: 499 LI 500 ++ Sbjct: 473 IL 474 >gi|254515869|ref|ZP_05127929.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR5-3] gi|219675591|gb|EED31957.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR5-3] Length = 483 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 154/494 (31%), Positives = 259/494 (52%), Gaps = 50/494 (10%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +++++ P + +W + L+ + + L P F+ ++ ++Y E I +L +E S Sbjct: 1 MQDELPPQQFNTWIRPLQA-TQTDQALQLLAPNRFICDFVADKYGELIEQLLREVQSGEA 59 Query: 106 GVEIL----------VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 +++ V++V L S + P++ + + P Q+ +P Sbjct: 60 ELQLEIAAGSSRATAVQAVPLASTPPVSRGPALAVVGGTESITVGDPQESVPQSDTPARA 119 Query: 156 SP--------------------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 +P L S + FS F+EG SN++AL AA ++E Sbjct: 120 APSLVETTLHYGQASKSEVHEALQHQHNLVSNYTFSNFVEGKSNQLALAAANQVSENPGG 179 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLF++ VGLGKTHL+ A+ NA +PN R+VYL +E F+ A++ N Sbjct: 180 AY-----NPLFLYGGVGLGKTHLMHAVGNALKINKPNARIVYLHSERFVADMVKALQLNA 234 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R++D LLIDD+QF K Q EF H N+LL+ +Q++ DR P E++ L Sbjct: 235 IADFKRYYRSVDALLIDDIQFFAKKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEIDGL 294 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R++SR G++V + D E R +IL +++ +L++ + +A+ + ++ Sbjct: 295 EERLKSRFGWGLTVAVEPPDLETRVAIL-----MNKASQARLDLPPDAAFFIAQRIRSNV 349 Query: 369 RELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +++ +F + ++ E L L+ K++ +++IQR VA++Y I Sbjct: 350 RELEGALKRVIASANFTRRPIDVDLVKESLKDLLALQ-DKQVSLDNIQRTVAEYYKIKVA 408 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DL S RR R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RK+ ++ ET Sbjct: 409 DLNSRRRNRSVARPRQVAMALAKELTNYSLPEIGDAFGGRDHTTVLHACRKIRELRETSS 468 Query: 488 TLKKEVELLKRLIS 501 + ++ + L RL++ Sbjct: 469 DIHEDYKNLLRLLT 482 >gi|254488435|ref|ZP_05101640.1| chromosomal replication initiator protein DnaA [Roseobacter sp. GAI101] gi|214045304|gb|EEB85942.1| chromosomal replication initiator protein DnaA [Roseobacter sp. GAI101] Length = 454 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 173/467 (37%), Positives = 271/467 (58%), Gaps = 18/467 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ +T + RL VG + + +W L V I L VPTNF ++ + + I Sbjct: 2 QATWTKIRERLLKTVGKNNFTTWIDPLAVGPVEDGISTLFVPTNFFGNYVSQNFADLILH 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 Q E +I ++ V S + +P + +P +P+ Sbjct: 62 EMQSEDDKITRLKFAVNR----------SEKTARPDAPQPRAQAAAPAPASPPANAPLNT 111 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PLD+RF F F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ A Sbjct: 112 APLDARFSFDNFVVGKPNELAHAAARRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IA R+P L V+YL+AE FM+RF A+RD ++ K+ R++D+L++DD+QF+ GK Sbjct: 167 IAQELQIRKPELNVLYLSAEQFMYRFVQALRDRKMMDFKEIFRSVDVLMVDDVQFIAGKD 226 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L+D KQ++ +ADR P E++ L+ R++SRLQ G+ V L DYE+R Sbjct: 227 STQEEFFHTFNALVDQNKQIIISADRAPGEIKDLEDRVKSRLQCGLVVDLHPTDYELRLG 286 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL++++ QK P L + VL +A +TT+ R L+GA +L S + ++ Sbjct: 287 ILQSKVETQQKNYPGLEVEAGVLEFLAHRITTNVRVLEGALTRLFAFASLVGREINMDLT 346 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L+ ++ +K+ +E+IQR V++HYNI +D++ +R+R+ RPRQVAMYL K MT Sbjct: 347 QDCLADVLRAS-ERKISVEEIQRKVSEHYNIRLSDMVGPKRLRSYARPRQVAMYLCKKMT 405 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RS PEIGRRFG RDHTTV+H V+++E++ + D + +++ELL+R + Sbjct: 406 SRSLPEIGRRFGGRDHTTVMHGVKRIEELKQNDAQIAEDLELLRRAL 452 >gi|49474936|ref|YP_032977.1| chromosomal replication initiation protein [Bartonella henselae str. Houston-1] gi|49237741|emb|CAF26933.1| Chromosomal replication initiator protein D [Bartonella henselae str. Houston-1] Length = 523 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 277/474 (58%), Positives = 355/474 (74%), Gaps = 6/474 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 50 EEEGAAAFARVMAQLKAQVGIEAYTSWFGRLKLAEYSRNLVKLSVPTAFLRSWINNHYGS 109 Query: 92 TITKLFQEEHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +T L+++E+S I VE++VR V+ V ++P + + ++ + + Sbjct: 110 LLTNLWKQENSAILRVEVIVRGMKRVSKAVVCGKNAAPVVLEEKTASSFLENYTEHSVRG 169 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + +FGSPLDSR+ F +F+EGSSNRVAL AA+SIAE + +R NPLFIHASVGLG Sbjct: 170 VEAGIFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHK---SALRFNPLFIHASVGLG 226 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQAIA A++KR RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDM Sbjct: 227 KTHLLQAIAAAALKRLKPARVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIIDDM 286 Query: 269 QFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 QFLQGK IQ+EFCHLLN LLDSAKQVV AADRPPSELESLD R+RSRLQGGV++ + D Sbjct: 287 QFLQGKSIQNEFCHLLNMLLDSAKQVVVAADRPPSELESLDLRVRSRLQGGVALEIEAPD 346 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YEMR +L+ RL ++Q++D + I++EVL ++A+T+ SGR+++GAFNQL+FR SF L Sbjct: 347 YEMRLEMLRQRLKVAQQDDNMIVISDEVLQYIAKTILGSGRDIEGAFNQLLFRQSFESDL 406 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E DE L HL +GE+K++RIE+IQR VA+HYN+S+ DLLSNRR RTVV+PRQVAMYL Sbjct: 407 SLERIDEFLGHLTRSGESKRIRIEEIQRAVARHYNVSKQDLLSNRRTRTVVKPRQVAMYL 466 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 467 AKMLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 520 >gi|227539247|ref|ZP_03969296.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33300] gi|300770720|ref|ZP_07080599.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33861] gi|227240929|gb|EEI90944.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33300] gi|300763196|gb|EFK60013.1| DNA-directed DNA replication initiator protein [Sphingobacterium spiritivorum ATCC 33861] Length = 475 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 131/483 (27%), Positives = 242/483 (50%), Gaps = 22/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S++ +K+ + + +WF+ +K + N++ + VP+ F W++ Y+ Sbjct: 1 MEKTYTSVWNSCLQIIKDNIPAQSFKTWFEPVKAVKLDENVLTIQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + K ++ +E +V + ++ T + PS + P+ L K Sbjct: 61 GILRKTVKKFLGEQGRLEYNIVVEKSSTNIPYTTNIPSNGNGAEGKRQSIPVPVNLNKNI 120 Query: 150 ISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +P L+ + F FIEG NR+A +A ++A NPL Sbjct: 121 KNPFVIPGLKKLQVDPQLNQHYTFDNFIEGECNRLARSAGFAVANKPG----GTSFNPLM 176 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ VGLGKTHL QAI N + P+ V+Y++ E F +F ++++N + + + + Sbjct: 177 LYGDVGLGKTHLSQAIGNEIKRNLPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNFYQAM 236 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ SR + G Sbjct: 237 DVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQIILTSDKAPKDLAGLEERLLSRFKWG 296 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 +S + + D E R +ILK ++ + + E V+ +VA + S REL+GA L+ Sbjct: 297 LSADIQVPDLETRMAILKKKMYSD-----GIELPENVVEYVAHQIDNSVRELEGAMVSLL 351 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 + + + +A +L + V +K++ +E IQ++V +++ + + S R R + Sbjct: 352 AQSTLNKKEIDLNLAKSMLKNFVKN-TSKEISMEYIQKLVCEYFEVPVEMVKSKVRKREI 410 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+ RQ++MYL+K T S IG FG RDH+TV++A + VE ++ETD K V+ + + Sbjct: 411 VQARQISMYLAKNHTKSSLKSIGNFFGGRDHSTVIYACQTVEDLIETDKKFKTYVQDILK 470 Query: 499 LIS 501 + Sbjct: 471 KLK 473 >gi|300309347|ref|YP_003773439.1| chromosomal replication initiator protein [Herbaspirillum seropedicae SmR1] gi|300072132|gb|ADJ61531.1| chromosomal replication initiator protein [Herbaspirillum seropedicae SmR1] Length = 465 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 134/474 (28%), Positives = 237/474 (50%), Gaps = 19/474 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S +L+ ++ P Y++W + L ++ ++ P F W+K ++ IT Sbjct: 2 ENFWQACSQKLEQELTPQQYSAWIKPLVPLDYEDGLLRVAAPNRFKLDWVKTQFANRITA 61 Query: 96 LFQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLSPINTNI--SKSPIILGKQT 149 L E V+ ++ P+ A + + P + + P + Sbjct: 62 LACEYWDAPTEVQFVLDPRGNQGRRPAAAAAAGNGASGLGLPNHEQLHLDPEPAQPVRAV 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S ++ F + G +N++A AA +A Y NPLF++ VGLGK Sbjct: 122 APRQEQSRINPVLTFDNLVTGKANQLARAAATQVANNPGTSY-----NPLFLYGGVGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 TH++ AI N + P ++ Y+ AE ++ +A + + K ++DLLLIDD+Q Sbjct: 177 THIIHAIGNQVLVDNPGAKIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDLLLIDDIQ 236 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F GK Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + + Sbjct: 237 FFGGKSRTQEEFFYAFEALIAAKKQIIITSDTYPKEISGMDDRLISRFDSGLTVAIEPPE 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 EMR +IL + + + ++++V VA+ + ++ REL+GA +++ F Sbjct: 297 LEMRVAIL-----MKKASAEDVVLSDDVAFFVAKHLRSNVRELEGALRKILAYSRFHGKD 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T ++ E L L++ +++ +E+IQ+ VA +NI D+ S +R + RPRQ+AMY Sbjct: 352 ITIDVVKEALKDLLSVQ-NRQISVENIQKTVADFFNIKVADMYSKKRPANIARPRQIAMY 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T +S PEIG FG RDHTTVLHAVRK+ E+ +L++ + Sbjct: 411 LAKELTQKSLPEIGDLFGGRDHTTVLHAVRKIAADRAKSPECNHELHVLEQTLK 464 >gi|301154703|emb|CBW14166.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus parainfluenzae T3T1] Length = 455 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 156/472 (33%), Positives = 261/472 (55%), Gaps = 21/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +++ S+L++QV P ++W + L+ + + V L F+K+W++N YL Sbjct: 1 MSLSNLWQDCLSQLQDQVSPMDLSTWLRPLQADVISQDQVVLYASNMFVKSWVENHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + S+ ++I+V+ P+ + PS T N +S + +++ +P Sbjct: 61 IHQ-ICQALSKNPNLQIIVKEGVKPAPKTIEPDPSQT------ANHQESAVSFQQESDAP 113 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 F S L+ + +F F+EG SN++A Q +A NP F++ GLGKTH Sbjct: 114 TKFESHLNRKHLFENFVEGKSNQLARAVGQKLALAPGEP----TANPFFLYGGTGLGKTH 169 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LLHAIGNGILANKPNARVLYIHANNFMQHMVKAMRDNKMDQFKKFYRSLDALLVDDIQFF 229 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 AEKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 289 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ + + EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 TRVAIL-----LKKAEEHHMELPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGHID 344 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ + + IE+IQ++VA++Y I DL S R R+V RPRQVAM L+ Sbjct: 345 IDFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVADLKSKSRARSVTRPRQVAMALA 403 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S PEIGR F +RDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 KELTNKSLPEIGRAF-ERDHTTVLNACREVPKFREKDSSIQEDWANLIRTLS 454 >gi|239830847|ref|ZP_04679176.1| chromosomal replication initiator protein DnaA [Ochrobactrum intermedium LMG 3301] gi|239823114|gb|EEQ94682.1| chromosomal replication initiator protein DnaA [Ochrobactrum intermedium LMG 3301] Length = 534 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 288/526 (54%), Positives = 373/526 (70%), Gaps = 27/526 (5%) Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNC---ESIFTIVSSRLKNQVGPDVYAS 57 M + A + + + DK +E++ + +F ++++LK +VG ++Y+S Sbjct: 9 MMTGKSTATMGDAHANRIHGSSATGNDKSLVELSGNAGDEVFERLTAKLKARVGTEIYSS 68 Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR----- 112 WF RLK + +IV LSVPT FL++WI N Y E +T+L+QEE+ +I VE++VR Sbjct: 69 WFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTELWQEENPQILKVEVVVRGVSRV 128 Query: 113 ---SVALPSVEKTASSPSITKL-------------SPINTNISKSPIILGKQTISPVFGS 156 + + + E + + P + P+ + + V GS Sbjct: 129 VRSAAPVEACEASENKPVVAPREKMVFPLGQSFGGQPVGDKRGSAVVAESAAASGAVLGS 188 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 PLD R+ F +F++G+SNRVAL AA++IAE G + VR NPLFIHASVGLGKTHLLQAI Sbjct: 189 PLDPRYTFDSFVDGASNRVALAAARTIAEA---GSSAVRFNPLFIHASVGLGKTHLLQAI 245 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 A A+++RQ RVVYLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK I Sbjct: 246 AAAALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSI 305 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 QHEFCHLLN+LLDSAKQVV AADR PSELESLD R+RSRLQGGV++ + DYEMR +L Sbjct: 306 QHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVALEVAAPDYEMRVEML 365 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + RLA +Q EDP L I EE+L HVARTVT SGREL+GAFNQL+FR SF P ++ + DEL Sbjct: 366 RRRLAAAQAEDPSLTIGEEILSHVARTVTGSGRELEGAFNQLLFRQSFEPNISIDRVDEL 425 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L HL GE K++RIE+IQR+VA+HYN+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS Sbjct: 426 LGHLTRVGEPKRIRIEEIQRIVARHYNVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRS 485 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIGRRFG RDHTTVLHAVRK+E ++ D L +E+ELLKRLI++ Sbjct: 486 LPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQELELLKRLIND 531 >gi|119503573|ref|ZP_01625656.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2080] gi|119460635|gb|EAW41727.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2080] Length = 477 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 151/478 (31%), Positives = 260/478 (54%), Gaps = 27/478 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + RL++++ P + +W + L+ ++ V L+ P F++ +++ RY I ++ Sbjct: 11 WQWCLGRLEDELPPQQFNTWIKPLQANASEGG-VTLAAPNRFIRDFVEERYSVLIGEVLA 69 Query: 99 EEHSR-------IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS------PIIL 145 E ++ + G + V S A ++ TA + PI T + P Sbjct: 70 ESGAQSTEVTIVVGGAPVSVVSPATSTISGTAGAAVPCASQPIETPARVAKERFVAPPRA 129 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 P L + F +F+EG SN++AL AAQ +A+ Y NPLF++ V Sbjct: 130 PAVQTVPSHQHNLVEGYTFRSFVEGKSNQLALAAAQQVADNPGDSY-----NPLFLYGGV 184 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ A+ N+ +++P+ R+VYL +E F+ A++ N + K R++D LLI Sbjct: 185 GLGKTHLMHAVGNSLRRKKPDARIVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLI 244 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ DR P E+ L+ R++SR G++V + Sbjct: 245 DDIQFFANKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEINGLEERLKSRFGWGLTVAV 304 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + E + + + +A+ + ++ REL+GA +++ +F Sbjct: 305 EPPELETRVAIL-----MKKAEQSGVTLPHDAAFFIAQRIRSNVRELEGALKRVIASANF 359 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 ++ E L L+ K++ +++I+R+VA++Y I +L+S RR R++ RPRQ Sbjct: 360 TGRPFDIDLIKESLKDLLALQ-DKQVSLDNIKRIVAEYYKIKLAELMSKRRSRSIARPRQ 418 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAM LSK +T S PEIG FG RDHTTVLHA RK++++ ET ++++ + L RL++ Sbjct: 419 VAMALSKELTNHSLPEIGDSFGGRDHTTVLHACRKIKELRETTSDIREDYKNLLRLLT 476 >gi|254558654|ref|YP_003065749.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens DM4] gi|254265932|emb|CAX21681.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens DM4] Length = 501 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 216/488 (44%), Positives = 308/488 (63%), Gaps = 23/488 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ + +T V RL+ ++G DV+ASWF RL+ +V + L+VPT FLK+WI++ Y++ Sbjct: 19 VDLPAAWTRVKRRLRAELGEDVFASWFARLELETVEGGVARLTVPTRFLKSWIESHYIDR 78 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKT--ASSPSITKLSPINTNISKSPIIL----- 145 + F+ E + +E+ VR + P+ + P+ T + +P L Sbjct: 79 VLTTFRAEADGVSRIEVGVRGPSGPARPSAGVPAKPNATSGPLNRLHAIATPAALQGPGP 138 Query: 146 ----------GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 G + G+PLD+R F+ F+ G SN +A AA+ IA DS G Sbjct: 139 MIETEIASPRGDSASVDLNGAPLDARLSFANFVVGRSNALAHAAAERIARSDSDG---AL 195 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL++HA VGLGKTHLL A +A+ + RV+YLTA+ FM+ F +A++ AL K+ Sbjct: 196 YNPLYVHAGVGLGKTHLLHAAGHAARE--AGRRVIYLTADRFMYGFVNALKTQNALAFKE 253 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR IDLL++DD+QF+QGK IQ EF H LN+L+DS +QVV A+DRPP+ELE+LD R+RSR Sbjct: 254 RLRAIDLLILDDVQFIQGKSIQTEFGHTLNALIDSGRQVVVASDRPPTELEALDERVRSR 313 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L GG+ V +G D +R SIL RL ++ P ++ V +VAR +T +GR+L+GA Sbjct: 314 LAGGLVVEIGGLDEGLRASILSARLDAVRQSHPNFEVSPAVSAYVARAITANGRDLEGAV 373 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 N+L+ + +T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR Sbjct: 374 NRLLAHATLTGAPVTVETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERR 433 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 VV+PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVE Sbjct: 434 TAAVVKPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDAVLGDEVE 493 Query: 495 LLKRLISE 502 LLKR++ + Sbjct: 494 LLKRMLQD 501 >gi|240136784|ref|YP_002961251.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens AM1] gi|240006748|gb|ACS37974.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Methylobacterium extorquens AM1] Length = 501 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 216/488 (44%), Positives = 308/488 (63%), Gaps = 23/488 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ + +T V RL+ ++G DV+ASWF RL+ +V + L+VPT FLK+WI++ Y++ Sbjct: 19 VDLPAAWTRVKRRLRAELGEDVFASWFARLELETVDGGVARLTVPTRFLKSWIESHYIDR 78 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKT--ASSPSITKLSPINTNISKSPIIL----- 145 + F+ E + +E+ VR + P+ + P+ T + +P L Sbjct: 79 VLTTFRAEADGVSRIEVGVRGPSGPARPTAGVPAKPNATSGPLNRLHAIATPAALQGPGP 138 Query: 146 ----------GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 G + G+PLD+R F+ F+ G SN +A AA+ IA DS G Sbjct: 139 MIETEIASPRGDSASVDLNGAPLDARLSFANFVVGRSNALAHAAAERIARSDSDG---AL 195 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL++HA VGLGKTHLL A +A+ + RV+YLTA+ FM+ F +A++ AL K+ Sbjct: 196 YNPLYVHAGVGLGKTHLLHAAGHAARE--AGRRVIYLTADRFMYGFVNALKTQNALAFKE 253 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR IDLL++DD+QF+QGK IQ EF H LN+L+DS +QVV A+DRPP+ELE+LD R+RSR Sbjct: 254 RLRAIDLLILDDVQFIQGKSIQTEFGHTLNALIDSGRQVVVASDRPPTELEALDERVRSR 313 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L GG+ V +G D +R SIL RL ++ P ++ V +VAR +T +GR+L+GA Sbjct: 314 LAGGLVVEIGGLDEGLRASILSARLDAVRQSHPNFEVSPAVSAYVARAITANGRDLEGAV 373 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 N+L+ + +T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR Sbjct: 374 NRLLAHATLTGAPVTVETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERR 433 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 VV+PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVE Sbjct: 434 TAAVVKPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDAVLGDEVE 493 Query: 495 LLKRLISE 502 LLKR++ + Sbjct: 494 LLKRMLQD 501 >gi|163849458|ref|YP_001637501.1| chromosomal replication initiation protein [Methylobacterium extorquens PA1] gi|218528084|ref|YP_002418900.1| chromosomal replication initiation protein [Methylobacterium chloromethanicum CM4] gi|163661063|gb|ABY28430.1| chromosomal replication initiator protein DnaA [Methylobacterium extorquens PA1] gi|218520387|gb|ACK80972.1| chromosomal replication initiator protein DnaA [Methylobacterium chloromethanicum CM4] Length = 501 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 216/488 (44%), Positives = 308/488 (63%), Gaps = 23/488 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ + +T V RL+ ++G DV+ASWF RL+ +V + L+VPT FLK+WI++ Y++ Sbjct: 19 VDLPAAWTRVKRRLRAELGEDVFASWFARLELETVDGGVARLTVPTRFLKSWIESHYIDR 78 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKT--ASSPSITKLSPINTNISKSPIIL----- 145 + F+ E + +E+ VR + P+ + P+ T + +P L Sbjct: 79 VLTTFRAEADGVSRIEVGVRGPSGPARPSAGVPAKPNATSGPLNRLHAIATPAALQGPGP 138 Query: 146 ----------GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 G + G+PLD+R F+ F+ G SN +A AA+ IA DS G Sbjct: 139 MIETEIASPRGDSASVDLNGAPLDARLSFANFVVGRSNALAHAAAERIARSDSDG---AL 195 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL++HA VGLGKTHLL A +A+ + RV+YLTA+ FM+ F +A++ AL K+ Sbjct: 196 YNPLYVHAGVGLGKTHLLHAAGHAARE--AGRRVIYLTADRFMYGFVNALKTQNALAFKE 253 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR IDLL++DD+QF+QGK IQ EF H LN+L+DS +QVV A+DRPP+ELE+LD R+RSR Sbjct: 254 RLRAIDLLILDDVQFIQGKSIQTEFGHTLNALIDSGRQVVVASDRPPTELEALDERVRSR 313 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L GG+ V +G D +R SIL RL ++ P ++ V +VAR +T +GR+L+GA Sbjct: 314 LAGGLVVEIGGLDEGLRASILSARLDAVRQSHPNFEVSPAVSAYVARAITANGRDLEGAV 373 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 N+L+ + +T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR Sbjct: 374 NRLLAHATLTGAPVTVETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERR 433 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 VV+PRQ+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVE Sbjct: 434 TAAVVKPRQIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKQIGEDAVLGDEVE 493 Query: 495 LLKRLISE 502 LLKR++ + Sbjct: 494 LLKRMLQD 501 >gi|22298146|ref|NP_681393.1| chromosomal replication initiation protein [Thermosynechococcus elongatus BP-1] gi|38257592|sp|Q8DL93|DNAA_THEEB RecName: Full=Chromosomal replication initiator protein DnaA gi|22294325|dbj|BAC08155.1| chromosomal replication initiator protein [Thermosynechococcus elongatus BP-1] Length = 453 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 241/473 (50%), Gaps = 30/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + E ++ + RL+ + + +W + S + + P F + W++ YL Sbjct: 1 MISSAEDLWHQILERLQLLLSRPTFETWIKTATVQSFDGQTLTICTPNPFARNWLQKYYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +TI + +E + +E+ + + T + P + ++ + Sbjct: 61 KTIADVAREIVGKPVEIELAI----------AQGAEHDTSIRPTSRGEVEATPPAARHR- 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 GS L+ ++VFS ++ G +NR+A A ++AE NPLF+ VGLGKT Sbjct: 110 ----GSELNPKYVFSRYVVGPNNRMAHAACLAVAESPGR-----EFNPLFLCGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ PN ++ Y++ E F +AIR + + ++ R +D++L+DD+QF Sbjct: 161 HLMQAIGHYRLEIDPNAKIFYVSTEQFTNDLIAAIRKDSMQSFREHYRAVDVMLVDDIQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPPS++ L R+ SR G+ + D Sbjct: 221 IEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPSQIPRLQERLCSRFSMGLIADIQPPDL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +IL+ + E + + EV+ ++A + T++ REL+GA + V S + + + Sbjct: 281 ETRMAILQK-----KAEYENIRLPREVIEYIAASYTSNIRELEGALIRAVAYISISGLPM 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E +LS V ET E I ++V++ N+ +DL N R R + RQV MYL Sbjct: 336 TVENIAPVLSPTVRKIET---SPEIILKVVSEALNVPISDLKGNSRRREISMARQVGMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P+IG FG +DHTTV+++ KV ++ TD + + L I+ Sbjct: 393 MRQYTGLSLPKIGEEFGGKDHTTVMYSCDKVAELQRTDPEMGSLLRQLSDRIN 445 >gi|251791868|ref|YP_003006588.1| chromosomal replication initiation protein [Aggregatibacter aphrophilus NJ8700] gi|247533255|gb|ACS96501.1| chromosomal replication initiator protein DnaA [Aggregatibacter aphrophilus NJ8700] Length = 453 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 252/473 (53%), Gaps = 23/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S++ ++++++ D + W L+ V N + L F++ W+ + YL Sbjct: 1 MENRPNSLWQNCLLQIQDKIPADDFKIWLYPLQA-DVTANSILLYASNAFVQKWVIDNYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT + Q+ + ++ + P K + + P + Sbjct: 60 PLITDIAQQTSANPNLTVSIIEGI----------KPEAPKAVAKSKATNTPPEEKSSNSN 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+++ +F F+EG SN++A AQ +A+ NPLF++ GLGKT Sbjct: 110 KSTYNSNLNTKLIFDNFVEGKSNQLARAVAQKVADNPGE----QTANPLFLYGGTGLGKT 165 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N I P+ RVVY+ +E F+ + + IRDN K R++D LL+DD+QF Sbjct: 166 HLLHAIGNGIIANNPDARVVYIHSERFVQQVVTYIRDNKMEEFKKFYRSLDALLVDDIQF 225 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H+ N+L + +Q++ +DR P E+E ++ R++SR G++ + D Sbjct: 226 FSDKEKTQEEFFHIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDL 285 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + ++ + + +V + + + T+ REL+GA N++ F + Sbjct: 286 ETRVAIL-----MKKADENNIELPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPI 340 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L ++ K + +++IQ++VA++Y I +DL S R R++ RPRQV+M L Sbjct: 341 TIDFVRETLKDMLALQ-DKLVTVDNIQKVVAEYYRIKVSDLKSKNRSRSITRPRQVSMAL 399 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T RS PEIG+ FGDRDHTTVLHA RKV ++ ET+ ++++ L R++S Sbjct: 400 AKELTNRSLPEIGKSFGDRDHTTVLHACRKVVELRETEPDIQEDWANLIRILS 452 >gi|15964121|ref|NP_384474.1| chromosomal replication initiation protein [Sinorhizobium meliloti 1021] gi|307301266|ref|ZP_07581028.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti BL225C] gi|307317937|ref|ZP_07597374.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti AK83] gi|15073297|emb|CAC41805.1| Chromosomal replication initiator [Sinorhizobium meliloti 1021] gi|306896339|gb|EFN27088.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti AK83] gi|306903722|gb|EFN34309.1| chromosomal replication initiator protein DnaA [Sinorhizobium meliloti BL225C] Length = 507 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 296/484 (61%), Positives = 355/484 (73%), Gaps = 16/484 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYL+ Sbjct: 27 DMRHDALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLD 86 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI- 150 IT L Q+E S I VEILVR+ S+ Sbjct: 87 LITTLVQQEDSEILKVEILVRTATRGHRPTAPEESVAAAAEAAVVPPSRRSAAPTVAIAA 146 Query: 151 ------------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR NP Sbjct: 147 AAVAAAPARPVQAPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEA---GAGAVRFNP 203 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIH+SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+SLR Sbjct: 204 LFIHSSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLR 263 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 NIDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQG Sbjct: 264 NIDLLIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQG 323 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 GV++ + DYEMR +LK RL ++++D L I E+L HVAR VT SGREL+GAFNQL Sbjct: 324 GVAIEMEGPDYEMRLEMLKRRLEAARQDDASLEIPLEILSHVARNVTASGRELEGAFNQL 383 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +FR SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR R + Sbjct: 384 LFRRSFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRVVAKHYNVSRQELVSNRRTRVI 443 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKR Sbjct: 444 VKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISADTKLSHEIELLKR 503 Query: 499 LISE 502 LI+E Sbjct: 504 LINE 507 >gi|319403601|emb|CBI77186.1| chromosomal replication initiator protein DnaA [Bartonella rochalimae ATCC BAA-1498] Length = 524 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 278/476 (58%), Positives = 354/476 (74%), Gaps = 8/476 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK Q+G + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 49 EEEGAAAFARVMAQLKAQIGVEAYTSWFGRLKLAEYNRNLVKLSVPTAFLRSWINNHYST 108 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSV-----EKTASSPSITKLSPINTNISKSPIILG 146 +T L+Q+E+S I VE++VRS+ S +S + P+++ + Sbjct: 109 LLTTLWQQENSAILRVEVIVRSMERVSKGFLCGSNKSSIVIEPEEQPVSSLVESYAEQSV 168 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K VFGSPLDSR+ F FIEG+SNRVAL AA+SIAE +++R NPLFI+ASVG Sbjct: 169 KSNQEGVFGSPLDSRYTFENFIEGTSNRVALAAARSIAEGHK---SSLRFNPLFIYASVG 225 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLLQAIA A++KR RV+YLTAEYFMWRFA AIRDN AL+ K+ LR+IDLL+ID Sbjct: 226 LGKTHLLQAIAAAALKRLTPARVIYLTAEYFMWRFAVAIRDNDALSFKEQLRDIDLLIID 285 Query: 267 DMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 DMQFLQGK IQ EFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RSRLQGGV++ + Sbjct: 286 DMQFLQGKSIQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIET 345 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYEMR ++L+ RL ++Q++D + I++E+L ++A+TV SGR+++GAFNQL+FR SF Sbjct: 346 PDYEMRLAMLRQRLKVAQQDDNMITISDEILEYIAKTVLGSGRDIEGAFNQLLFRQSFEV 405 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 L+ E DELL HL +GE+K++RIE+IQR VA+HYN+SR DLLSNRR RT+V+PRQVAM Sbjct: 406 DLSLERIDELLGHLTRSGESKRIRIEEIQRTVARHYNVSRQDLLSNRRTRTIVKPRQVAM 465 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 466 YLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 521 >gi|261868623|ref|YP_003256545.1| chromosomal replication initiation protein [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413955|gb|ACX83326.1| chromosomal replication initiator protein DnaA [Aggregatibacter actinomycetemcomitans D11S-1] Length = 453 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 250/473 (52%), Gaps = 23/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S++ +L++++ D + W L+ + N V L F++ W+ + YL Sbjct: 1 MENRPNSLWQNCLLQLQDKIPADDFKIWLYPLQA-DINANGVLLYASNAFVQKWVVDNYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT + ++ S + + V P+ K + S + Sbjct: 60 PLITDIARQ-TSTNPNLNVSVIEGIKPAAPKAEKPAKKQSAVGFSEEKSSAKTP------ 112 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+++ VF F+EG SN++A AQ +A+ NPLF++ GLGKT Sbjct: 113 ---YHSNLNTKLVFENFVEGKSNQLARAVAQKVADNPGE----QTANPLFLYGGTGLGKT 165 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N I PN RVVY+ +E F+ + + IRDN K R++D LL+DD+QF Sbjct: 166 HLLHAIGNGIIANNPNARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQF 225 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H+ N+L + +Q++ +DR P E+E ++ R++SR G++ + D Sbjct: 226 FSDKEKTQEEFFHIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDL 285 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + E+ +++ +V + + + T+ REL+GA N++ F + Sbjct: 286 ETRVAIL-----MKKAEENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPI 340 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L ++ K + +++IQ++VA++Y I +DL S R R+V RPRQVAM L Sbjct: 341 TIDFVRETLKDMLALQ-DKLVTVDNIQKVVAEYYRIKVSDLKSKNRSRSVARPRQVAMAL 399 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T RS PEIG+ FGDRDHTTVLHA R + +TD ++++ L R++S Sbjct: 400 AKELTNRSLPEIGKSFGDRDHTTVLHACRTIAGFRDTDPNIQEDWANLIRILS 452 >gi|319898309|ref|YP_004158402.1| chromosomal replication initiator protein DnaA [Bartonella clarridgeiae 73] gi|319402273|emb|CBI75812.1| chromosomal replication initiator protein DnaA [Bartonella clarridgeiae 73] Length = 520 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 283/476 (59%), Positives = 357/476 (75%), Gaps = 8/476 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK Q+G + Y SWF RLK N++ LSVPT FL++WI N Y Sbjct: 45 EEESTAAFARVMAQLKAQIGVEAYTSWFGRLKLAEYNRNLIKLSVPTAFLRSWINNHYSA 104 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKT-ASSPSITKLSPINTNISKSPIILGKQTI 150 +T L+Q+E+S I VE++VRS+ S S+ S + P ++S G+Q+I Sbjct: 105 LLTTLWQQENSEILRVEVIVRSMERVSKGLVCRSNKSSVVIVPEEQSVSPLVESYGEQSI 164 Query: 151 SP----VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 VFGSPLDSR+ F +F+EGSSNRVAL AA+SIAE +++R NPLFI+ASVG Sbjct: 165 KGIQVGVFGSPLDSRYTFESFVEGSSNRVALAAARSIAEGHK---SSLRFNPLFIYASVG 221 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLLQAIA A++KR +RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+ID Sbjct: 222 LGKTHLLQAIAAAALKRSTPVRVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIID 281 Query: 267 DMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 DMQFLQGK IQ EFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RSRLQGGV++ + Sbjct: 282 DMQFLQGKSIQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVALEIEA 341 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYEMR IL+ RL +Q++D + I++E+L ++A+TV SGR+++GAFNQL+FR SF Sbjct: 342 PDYEMRLEILRQRLKAAQQDDNMITISDEILEYIAKTVLGSGRDIEGAFNQLLFRQSFET 401 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 L+ E DE L HL +GE K++RIE+IQR VA+HYNISR DLLSNRR RTVV+PRQVAM Sbjct: 402 DLSLERIDEFLGHLTRSGELKRIRIEEIQRTVARHYNISRQDLLSNRRTRTVVKPRQVAM 461 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 462 YLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 517 >gi|149278936|ref|ZP_01885070.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] gi|149230215|gb|EDM35600.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] Length = 490 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 130/484 (26%), Positives = 246/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E C ++ +K+ + + +WF+ + + N++ + VP+ F W++ Y+ Sbjct: 15 MEKTCIEVWKNCLQIIKDNIPGQSFKTWFEPISALKLEGNVLTIQVPSLFFYEWLEEHYV 74 Query: 91 ETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + K +++ +E I+V + T + PS + P+ + K Sbjct: 75 GLLRKTVKKQLGEDGRLEYNIVVDKSSGSGSPYTTNIPSNGNGAESKFQSMPIPVSINKD 134 Query: 149 TISPVF---------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P L+S + F +IEG NR+A +A ++A NPL Sbjct: 135 IKNPFIIPGLKKLQVDPQLNSNYTFENYIEGDCNRLARSAGYAVAAKPG----GTSFNPL 190 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ VGLGKTHL QAI N + P+ V+Y++ E F +F ++++N + + + Sbjct: 191 MIYGGVGLGKTHLAQAIGNEIKRNMPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNFYQA 250 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D++++DD+ GK Q F H+ N L S KQ++ ++D+ P +L L+ R+ SR + Sbjct: 251 MDVIIMDDVHNFSGKEKTQDIFFHIFNHLHQSGKQIILSSDKSPKDLVGLEERLLSRFKW 310 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L + D E R +ILK ++ + + EV+ +VA + + REL+GA L Sbjct: 311 GLSADLQVPDLETRIAILKKKMYAD-----GIELPAEVVEYVAHNIDNNVRELEGAMVSL 365 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + + + ++A ++L + + +K++ +E IQ++V +++ + + + S R R Sbjct: 366 LAQSTLNKKDIDLDLAKQMLKNFIKN-TSKEISMEYIQKLVCEYFEVPVDMVKSATRKRE 424 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ++MYLSK T S IG FG RDH+TV++A + VE +++TD K V ++ Sbjct: 425 IVQARQISMYLSKSHTKSSLKTIGAFFGGRDHSTVIYACQTVEDLIDTDKKFKGYVHDIQ 484 Query: 498 RLIS 501 + + Sbjct: 485 KKLK 488 >gi|81251088|gb|ABB69887.1| DNA replication initiator protein [Nitrosovibrio sp. FJI82] gi|81251092|gb|ABB69890.1| DNA replication initiator protein [Nitrosovibrio sp. RY3C] Length = 460 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 138/469 (29%), Positives = 246/469 (52%), Gaps = 19/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETI 93 ++ + + ++ + +W + L+ H+ + L P F+ WIK+ +L I Sbjct: 5 DTFWLSCLEYFEKELNAQQFNTWIKPLRLDPSPGTHDELTLVAPNRFVMQWIKDNFLSHI 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ ++ +R ++ + K S + + + + +S +P L + Sbjct: 65 ERMAKKHFARDMHFQLKL----ADQPSKMPGSAADSAAAESPSTLSPAPPFLANRAPKGN 120 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ F F +F+ G +N++A A +AE Y NPLFI+ VGLGKTHL+ Sbjct: 121 TPSRLNPAFTFDSFVTGKANQLARAGAIQVAERPGVAY-----NPLFIYGGVGLGKTHLI 175 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N +++ +V Y+ AE ++ A + + K ++DLLLIDD+QF G Sbjct: 176 QAIGNLVLEQNSQAKVRYIHAEQYVSDVVRAYQHKAFDDFKQYYHSLDLLLIDDIQFFGG 235 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G++V + + EMR Sbjct: 236 KSRTQEEFFYAFNALIEAHKQVIITCDSYPKEISGMEERLVSRFGWGLTVAVEPPELEMR 295 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL + + + K+ ++E V +A+ + ++ REL+GA +++ F L+ + Sbjct: 296 VAIL-----LKKAQLEKIELDESVAFFIAKHIRSNVRELEGALKRVLAYSRFTNHPLSLD 350 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V RPRQ+AM ++K Sbjct: 351 LAKEALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRSRIVARPRQMAMAMAKE 409 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L ++ Sbjct: 410 LTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPNINRDFNTLLHIL 458 >gi|170738368|ref|YP_001767023.1| chromosomal replication initiation protein [Methylobacterium sp. 4-46] gi|168192642|gb|ACA14589.1| chromosomal replication initiator protein DnaA [Methylobacterium sp. 4-46] Length = 494 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 212/480 (44%), Positives = 304/480 (63%), Gaps = 16/480 (3%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + + V RL+ ++G DV+ASWF RL+ V L+VPT FLK+WI++ YL+ + Sbjct: 20 DVAAAWQRVKRRLRAELGEDVFASWFARLELQDVAGGTARLTVPTRFLKSWIESHYLDRV 79 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI----------NTNISKSPI 143 F+ E I G+E+ VR P+ ++ S K + I Sbjct: 80 LATFRSEADGIDGIEVGVRGPMAPARAAPGAAASAPKPASPIRTPGAAPAAPATIELPDA 139 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 ++ + G+PLD+R F TF+ G SN +A AA+ +A H + NPL+ HA Sbjct: 140 DRAQRGEGDLSGAPLDARLTFQTFVVGRSNALAHAAAERVA---GHEGSGPIYNPLYFHA 196 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHLL AI +A+ + RV+YLTA+ FM+ F +A++ AL K+ LR ID+L Sbjct: 197 GVGLGKTHLLHAIGHAAKE--AGRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDVL 254 Query: 264 LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 ++DD+QF+QG+ IQ EF H LN+L+D+ +QVVAAADRPP+ELESLD R+RSRL GG+ V Sbjct: 255 ILDDVQFIQGRSIQAEFGHTLNALIDAGRQVVAAADRPPTELESLDERVRSRLAGGLVVE 314 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 +G D +R +IL++RL + P ++ V +VA+ +T +GR+L+GA N+L+ + Sbjct: 315 IGTLDEALRATILQSRLEAVRVSHPGFEVSPAVAEYVAKAITANGRDLEGAVNRLLAHAT 374 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR VV+PR Sbjct: 375 LTGAPVTLETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERRTAAVVKPR 434 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVELLKR++ + Sbjct: 435 QIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKAIGEDSALSDEVELLKRMLQD 494 >gi|221069747|ref|ZP_03545852.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni KF-1] gi|220714770|gb|EED70138.1| chromosomal replication initiator protein DnaA [Comamonas testosteroni KF-1] Length = 468 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 144/469 (30%), Positives = 251/469 (53%), Gaps = 15/469 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 ++++ + +L ++ + +W + L + V + V F WI+ +Y I+ Sbjct: 11 QALWQVCVEQLGQELPEQQFNTWIKPLTALVAEDFSKVTVYVANRFKLDWIRAQYAGRIS 70 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + + + +E+ + V PS T+ + T P + ++ +PVF Sbjct: 71 AMLESLYGQPVTLELALAQRES-VVRTYVRPPSATQQTAAQTLNVAVPTVTSEEASAPVF 129 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ F T +EG++NR+A +AA +A H Y NPLFI+ VGLGKTHL+ Sbjct: 130 RTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLY-----NPLFIYGGVGLGKTHLVH 184 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N +K +P+ +++Y+ AE F+ A + K+ ++DLLLIDD+QF K Sbjct: 185 AVGNQLLKDKPDAKILYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANK 244 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR Sbjct: 245 DRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRV 304 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL I++ ++ EEV VA+ V ++ REL+GA +++ F ++ ++ Sbjct: 305 AIL-----INKARAENADMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQL 359 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 360 AREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKEL 418 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ +T+ L +++ +L++ + Sbjct: 419 TQKSLPEIGELFGGRDHTTVLHAVRKIAGERQTNTELNQQLHVLEQTLK 467 >gi|283797185|ref|ZP_06346338.1| DNA replication initiator protein, ATPase [Clostridium sp. M62/1] gi|291075143|gb|EFE12507.1| DNA replication initiator protein, ATPase [Clostridium sp. M62/1] gi|295090278|emb|CBK76385.1| chromosomal replication initiator protein DnaA [Clostridium cf. saccharolyticum K10] Length = 456 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 139/470 (29%), Positives = 255/470 (54%), Gaps = 31/470 (6%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + +K + + + +W + +S+ N + + VP +++ +Y +T Sbjct: 9 WEDILLHIKEEHELTDVSFKTWLLPTEAYSMKGNTLQILVPDIHFLGYMQKKYGFLLTVA 68 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E V+ + R E+ + + ++ + ++ + + + Sbjct: 69 IAEITGIECQVDFITREQIKEEPEEVSENQLLSHSTDVDQQV--------------IQNA 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ R+ F TF+ G++N +A A+ ++AE Y NPLFI+ VGLGKTHL+ +I Sbjct: 115 NLNPRYTFDTFVVGANNNLAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSI 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQG 273 + ++ P +++Y+T+E F AIR+ ++ RN D+LLIDD+QF+ G Sbjct: 170 GHFILQNNPKAKILYVTSEKFTNELIDAIRNKNNISTTEFREKYRNNDVLLIDDIQFIIG 229 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R Sbjct: 230 KESTQEEFFHTFNALYEAKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETR 289 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+ ++E NI+ EV+ ++A V ++ REL+GA ++V +T E Sbjct: 290 MAILRK-----KEELEGYNIDNEVIKYIATHVKSNIRELEGALTKIVALSKLNKREITTE 344 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+E L L++ G +++ E I ++V+ H+ I+ D+ S +R + +V PRQ+AMYL + Sbjct: 345 LAEEALKDLISPGGAREITPELIIQVVSDHFGITPADISSKKRNKEIVYPRQIAMYLCRT 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT IG+ GDRDHTT++H K+ +E + +L+ +E+LK+ +S Sbjct: 405 MTGTPLQGIGKYLGDRDHTTIIHGAEKITADMEKNESLRNTLEVLKKKLS 454 >gi|319406516|emb|CBI80158.1| chromosomal replication initiator protein DnaA [Bartonella sp. 1-1C] Length = 520 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 281/476 (59%), Positives = 357/476 (75%), Gaps = 8/476 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK Q+G + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 45 EEEGAAAFARVMAQLKAQIGVEAYTSWFGRLKLAEYNRNLVKLSVPTAFLRSWINNHYSA 104 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKT-ASSPSITKLSPINTNISKSPIILGKQTI 150 +T L+Q+E+S I VE++VRS+ S S+ S + P ++S +Q+I Sbjct: 105 LLTTLWQQENSAILRVEVIVRSMERVSKGFVCGSNKSSIVIIPEEQSVSSVVESYAEQSI 164 Query: 151 SP----VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 VFGSPLDSR+ F FIEG+SNRVAL AA+SIAE +++R NPLFI+ASVG Sbjct: 165 KSNQVGVFGSPLDSRYTFENFIEGASNRVALAAARSIAEGHK---SSLRFNPLFIYASVG 221 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLLQAIA A++KR RV+YLTAEYFMWRFA AIRDN AL+ K+ LR+IDLL+ID Sbjct: 222 LGKTHLLQAIAAAALKRLTPARVIYLTAEYFMWRFAVAIRDNDALSFKEQLRDIDLLIID 281 Query: 267 DMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 DMQFLQGK IQ EFCHLLN LLDSAKQV+ AADRPP+ELESLD R+RSRLQGGV++ + Sbjct: 282 DMQFLQGKSIQREFCHLLNMLLDSAKQVIVAADRPPAELESLDLRVRSRLQGGVTLEIET 341 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYEMR ++L+ RL ++Q++D + I++E+L ++A+TV SGR+++GAFNQL+FR SF Sbjct: 342 PDYEMRLAMLRQRLKVAQQDDNMITISDEILEYIAKTVLGSGRDIEGAFNQLLFRQSFEV 401 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 L+ E DELL HL +GE+K++RIE+IQR VA+HYN+SR DLLSNRR RT+V+PRQVAM Sbjct: 402 DLSLERIDELLGHLTRSGESKRIRIEEIQRTVARHYNVSRQDLLSNRRTRTIVKPRQVAM 461 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 462 YLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 517 >gi|296448171|ref|ZP_06890069.1| chromosomal replication initiator protein DnaA [Methylosinus trichosporium OB3b] gi|296254302|gb|EFH01431.1| chromosomal replication initiator protein DnaA [Methylosinus trichosporium OB3b] Length = 497 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 220/480 (45%), Positives = 307/480 (63%), Gaps = 20/480 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V RL+ ++G VY SWF RL+ +V + L+VPT FLK+WI++ Y + I Sbjct: 22 WERVRGRLRAELGDAVYNSWFARLELETVKDGALLLTVPTKFLKSWIQSHYADRIKTRLC 81 Query: 99 EEHSRIQGVEILVRSVAL-------------PSVEKTA--SSPSITKLSPINTNISKSPI 143 E + V I VRS + P+ E++A + P+ + ++ S Sbjct: 82 AEFAGTDRVVIDVRSPSRRARARDADAAVVAPTAERSAVEAPPAPVIVEKPEPHVRSSGR 141 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + GSPLD R FSTF+ G SN++A AA +A D+ NPL+ HA Sbjct: 142 AAPRVEGDHFNGSPLDRRLSFSTFLVGPSNQLAYAAACRVA--DARAGDHPLFNPLYTHA 199 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 +VGLGKTHLLQA+A A+ + RV+YLTAE FM F SA+ ++ K+ LRNID+L Sbjct: 200 AVGLGKTHLLQAVARAANDNR--RRVIYLTAEKFMSGFVSALTAQTSMAFKEKLRNIDVL 257 Query: 264 LIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +IDD+QFLQGK IQ EFCH LN+L+D KQVV AADRPPS+LE+LD R+ SR +GG+ V Sbjct: 258 IIDDVQFLQGKSIQQEFCHTLNALIDDGKQVVVAADRPPSDLETLDERVLSRFKGGLCVD 317 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 +G D E+R IL+ R+A +Q+ P ++ V+ +VA+T+ T+GR+L+GA N+L+ + Sbjct: 318 IGPLDEELRVKILEARIAAAQEAQPSFHVPPAVVSYVAKTIVTNGRDLEGAVNRLLAHST 377 Query: 384 FAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 L E A+ + LV E K+++I+DIQ++VA HYNISR D+LS+RR VVRPR Sbjct: 378 LNGAPLCVETAENAIRDLVRNHEPKRVKIDDIQKLVASHYNISRADILSSRRTANVVRPR 437 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AMYLSK++T RS PEIGRRFG RDHTTVLHAVRKVE++ D +L + +ELLKR+++E Sbjct: 438 QIAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKVEELAAKDRSLAEVIELLKRILAE 497 >gi|206889361|ref|YP_002247869.1| chromosomal replication initiator protein DnaA [Thermodesulfovibrio yellowstonii DSM 11347] gi|259645263|sp|B5YGT9|DNAA_THEYD RecName: Full=Chromosomal replication initiator protein DnaA gi|206741299|gb|ACI20356.1| chromosomal replication initiator protein DnaA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 438 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 134/469 (28%), Positives = 235/469 (50%), Gaps = 38/469 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 I+ + + +VG + WF +K + ++ + VP F K WI++ + I+ Sbjct: 4 INKIWQKILEIILEKVGESTFELWFSPIKLLDIKNSEAFIEVPNRFFKDWIEDNFPSIIS 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F + I G ++ V+ + +T L ++ + Sbjct: 64 DSFYQ----ITGSQVEVKYIITGKEHETG---------------------LIEEKKQVIK 98 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ ++ F TF+ G SN+ A A+ +AE Y NPLFI+ VGLGKTHL+ Sbjct: 99 KGNLNPKYTFDTFVVGPSNQFAHAASFRVAENPGFAY-----NPLFIYGGVGLGKTHLIT 153 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + ++P + V Y+++E F F SAIR ++ R +D+ L+DD+QF+ GK Sbjct: 154 AIGNYILDKKPEMNVCYISSEQFTGEFVSAIRHEKMPEFRNKYRTVDVFLVDDIQFIAGK 213 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N L KQ+V ++DRPP E+ + R+RSR G+ + + E R Sbjct: 214 DSTQEEFFHTFNELYSKQKQIVISSDRPPMEISDITDRLRSRFGMGLIADIQPPEIETRL 273 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL + + + + E+V +A V ++ REL+G+ +L S + ++ ++ Sbjct: 274 AILYK-----KADMEGVKLPEDVAYFIASRVKSNVRELEGSLIKLCAYTSLTKVPISMDV 328 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A +L L+ E K + IE IQ+ V + + D+ S +R + + R++AMY++K + Sbjct: 329 AKYVLRDLLPD-ENKPITIELIQKAVCEAVGLKIQDIKSKKRTKEISNARKLAMYITKKL 387 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S EIG FG +DH TV++A ++VEK E D ++ + ++ + + ++ Sbjct: 388 TNLSLAEIGNAFGGKDHATVIYACKQVEKEKEKDESISRLIDSIIKKVT 436 >gi|307265438|ref|ZP_07546994.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter wiegelii Rt8.B1] gi|306919552|gb|EFN49770.1| chromosomal replication initiator protein DnaA [Thermoanaerobacter wiegelii Rt8.B1] Length = 443 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 254/473 (53%), Gaps = 34/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + I+ + +K+++ P Y +W +K +++ +++ LS P F K I RY+ Sbjct: 1 MYGDHRQIWERIVEVIKSELTPTSYNTWLVHIKPLAIIDDVLFLSTPNTFTKNIINGRYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + +++ ++IL + + + + Sbjct: 61 NIIYDAASKATNKLYEIKILSEDEEEYREIRES--------------------LEKENLT 100 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SN++A A ++A+ + Y NPLFI+ VGLGKT Sbjct: 101 ESTTLSTLNPKYTFDTFVVGNSNKLAHAACLAVAQAPAKAY-----NPLFIYGGVGLGKT 155 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + K Q +++Y+T+E F ++I+D+ ++ RNID+LLIDD+QF Sbjct: 156 HLMHAIGHFINKHQSGYKIMYVTSETFTNELVNSIKDDKNEEFRNKYRNIDVLLIDDIQF 215 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + K Q EF H N+L ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + DY Sbjct: 216 IAKKERTQEEFFHTFNTLYEANKQIVISSDRPPKEIPTLEERLRSRFEWGLIADIQPPDY 275 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +ILK + + LNI +EVL +VA + ++ REL+GA ++V + + Sbjct: 276 ETRIAILKK-----KAQTENLNIPDEVLAYVAEKIQSNIRELEGALIRIVAFSNLTKSNI 330 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+ L +V+ T+++ ++ IQ V K+YNI D S +R + + PRQ+AMYL Sbjct: 331 DLELTKHALKEIVSNK-TREITVKLIQEEVCKYYNIKLEDFRSRKRTKNIAYPRQIAMYL 389 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IG FG +DHTTV+HA K+ ++ D L +++E LK+ I Sbjct: 390 ARELTDLSLPKIGEEFG-KDHTTVIHAYEKISNEIKQDELLSRQIEELKKRIK 441 >gi|319775073|ref|YP_004137561.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3047] gi|317449664|emb|CBY85870.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3047] Length = 454 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 153/471 (32%), Positives = 255/471 (54%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + ++PS T + + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKVVENAPSDTPKTESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|302384445|ref|YP_003820267.1| chromosomal replication initiator protein DnaA [Clostridium saccharolyticum WM1] gi|302195073|gb|ADL02644.1| chromosomal replication initiator protein DnaA [Clostridium saccharolyticum WM1] Length = 458 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 144/478 (30%), Positives = 257/478 (53%), Gaps = 29/478 (6%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 + + + + LK + + + +W LK HSV V ++VP +I+ + Sbjct: 1 MLEKLKEKWDEILLNLKEEHEITDVSFKTWLLPLKVHSVNGEKVIVTVPDVEFLGYIRKK 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y + +E + G E V V ++K A++ NT + + Sbjct: 61 YGFLLKITIEE----VTGFECTVDFVVENQIQKEAATAPAGNTLITNT--------MNQV 108 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S + + L+ ++ F TF+ G++N +A A+ ++AE Y NPLFI+ VGLG Sbjct: 109 SQSAIITANLNPKYTFDTFVVGANNNLAHAASLAVAESPGEIY-----NPLFIYGGVGLG 163 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLI 265 KTHL+ +I + +K P +V+Y+T+E F AIR+ ++ RN D+LLI Sbjct: 164 KTHLMHSIGHFILKNNPAAKVLYVTSEKFTNELIDAIRNKNNFSPTEFREKYRNNDVLLI 223 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H N+L ++ KQ++ ++D+PP E+E+L+ R+RSR + G++V + Sbjct: 224 DDIQFIIGKESTQEEFFHTFNALYEAKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDI 283 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 DYE R +IL+ ++E NI+ EV+ ++A + ++ REL+GA ++V Sbjct: 284 QSPDYETRMAILRK-----KEEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRL 338 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T E+A+E L +++ + +++ E + ++VA HY ++ D+ S +R + +V PRQ Sbjct: 339 DNKEITVELAEEALKDIISPNDKREVTPELVIQVVADHYGLTPLDICSQKRNKEIVYPRQ 398 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MYL + M IG+ G RDHTT++H + K+ + + +L +E+LK+ I+ Sbjct: 399 IVMYLCREMVGTPLQMIGKFLGGRDHTTIIHGIEKITANADKNESLNNTIEILKKKIN 456 >gi|284051271|ref|ZP_06381481.1| chromosomal replication initiation protein [Arthrospira platensis str. Paraca] gi|291566281|dbj|BAI88553.1| chromosomal replication initiator protein DnaA [Arthrospira platensis NIES-39] Length = 453 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 243/474 (51%), Gaps = 28/474 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ E ++ V RL+ Q+G Y +W + S+ ++ + +S F W++ Y Sbjct: 1 MDISVEQLWNQVLERLQLQLGEPTYNTWIKTAIATSLENHCLVISTANPFACNWLQKHYR 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E I + Q+ +EI + T + + + N +S S + + + Sbjct: 61 EIIADVVQDILGD--RLEICI----------TTGTGELVTIDHHNPRVSSSGLDTVGEVV 108 Query: 151 SPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 V P L+S+++FS F+ G+ +R+A A+ ++AE NPLF+ VGLGK Sbjct: 109 PTVHKPPHLNSKYMFSQFVVGAGSRLAHAASLAVAESPGR-----EFNPLFLCGGVGLGK 163 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P RV Y++ E F +AIR + + +D R D+LL+DD+Q Sbjct: 164 THLMQAIGHYRLEINPLARVFYVSTEKFTNDLITAIRRDSMQSFRDHYRAADVLLVDDIQ 223 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ KQ+V A+DRPP+++ L R+ SR G+ + D Sbjct: 224 FIEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPTKISGLQDRLCSRFSMGLVADIQPPD 283 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + E + + V+ ++A T++ REL+GA + V S + + Sbjct: 284 LETRMAILQK-----KAEYENMRLPPAVIEYIATNYTSNIRELEGALIRAVAYISISSLP 338 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E +L+ + + E + + VA+ + +S DL + R R + RQV MY Sbjct: 339 MTVENIAAVLT---PKEQRSESSPEIVIQAVAEKFKVSVEDLKGHSRRREISLARQVGMY 395 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + T S P+IG FG +DHTTV++ K+ K + D L + ++ L I+ Sbjct: 396 LMRQHTDLSLPKIGEVFGGKDHTTVMYGCEKITKRRDRDSELHQILQQLSDRIN 449 >gi|312888502|ref|ZP_07748073.1| chromosomal replication initiator protein DnaA [Mucilaginibacter paludis DSM 18603] gi|311299000|gb|EFQ76098.1| chromosomal replication initiator protein DnaA [Mucilaginibacter paludis DSM 18603] Length = 475 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 134/483 (27%), Positives = 243/483 (50%), Gaps = 22/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E C +++ +K+ + + +WF+ +K + +++ + VP+ F W++ Y+ Sbjct: 1 MEKTCTNVWNSCLQIIKDNIPAQSFKTWFEPIKALRIEGSVLTIQVPSLFFFEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + K +++ +E +V + S T + PS + PI + K Sbjct: 61 GLLRKTIKKQLGEDGRLEYNIVVEQSSSSKPYTTNMPSNGNGAEGKNQSMPIPISINKDI 120 Query: 150 ISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +P L+ + F +FIEG NR+A +A ++A NPL Sbjct: 121 KNPFVIPGLKKLQVDPQLNQNYTFESFIEGDCNRLARSAGYAVAAKPG----GTSFNPLM 176 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHL QAI N + P+ V+Y++ E F +F A++ N + + + I Sbjct: 177 IYGGVGLGKTHLAQAIGNEIKRTLPDKLVLYVSCEKFTQQFVDALKHNNINDFVNFYQAI 236 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+L++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ SR + G Sbjct: 237 DVLIMDDVHNFAGKEKTQDFFFHIFNHLHQSGKQLIITSDKAPKDLAGLEERLLSRFKWG 296 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 +S L + D E R +ILK ++ +++ EV+ +VA + + REL+GA L+ Sbjct: 297 LSADLQIPDLETRMAILKTKIYQD-----GIDLPYEVIEYVAHNIDNNVRELEGAMVSLL 351 Query: 380 FRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 + + + +A +L + + TK++ +E IQ +V +++ + + S R R + Sbjct: 352 AQSTLNRKEIDLNLAKSMLKNFIKNS-TKEISMEYIQSLVCEYFEVPIEMVKSQTRKREI 410 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+ RQ++MYL+K T S IG FG RDH+TV++A + VE +++TD K V +++ Sbjct: 411 VQARQISMYLAKAHTKSSLKSIGNFFGGRDHSTVIYACQTVEDLIDTDKKFKGYVADIQK 470 Query: 499 LIS 501 + Sbjct: 471 KLK 473 >gi|114565577|ref|YP_752731.1| initiation of chromosome replication [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336512|gb|ABI67360.1| initiation of chromosome replication [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 436 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 159/466 (34%), Positives = 248/466 (53%), Gaps = 46/466 (9%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V + ++G + WF R+KF S NI + VP + K WI++RYL+ + Sbjct: 10 VWNEVLDSMYQEIGSTSFEIWFSRVKFSSFHDNIFCIIVPDSLTKEWIESRYLDIMQNKL 69 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + V + +R+ L S+ Sbjct: 70 RRLIDS--RVILSIRTEILSGKSDPVSA-------------------------------- 95 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ G+SNR A A ++ E Y NPLFI+ VGLGKTHL+QAI Sbjct: 96 LNPKYTFDTFVVGNSNRFAHAACYAVGESPFKSY-----NPLFIYGGVGLGKTHLMQAIG 150 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + R+PN V+Y+++E F S+I+D+ ++ R+ID+LL+DD+QFL GK Sbjct: 151 HHILSRKPNYLVMYVSSEQFTNDMISSIKDDTTSLFRNKYRSIDVLLVDDIQFLAGKERT 210 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S KQVV ++DRPP + +L+ R+RSR + G+ + D E R +IL Sbjct: 211 QEEFFHTFNTLHESNKQVVISSDRPPRNIPTLEDRLRSRFEWGLITDIQPPDLETRIAIL 270 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADE 395 + + + LNI VL ++A + ++ REL+GA +LV + L A E Sbjct: 271 RK-----KAQGENLNIPYSVLDYIANYIDSNIRELEGALIRLVAFATINNKPLDMNTAVE 325 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++ +K+ IE IQ+ VA HY++ N+++S +R + +V PR +AMYL + +T Sbjct: 326 ALKDIMPPPRPRKITIETIQKTVAAHYHLEINEIISKKRNKQLVYPRHIAMYLCRKLTDA 385 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 SFP+IG +FG RDHTTV+HA K+ L +D L E+ELL + I Sbjct: 386 SFPQIGEQFGGRDHTTVMHAHEKLVNELLSDRELVAEIELLCKKID 431 >gi|255533487|ref|YP_003093859.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] gi|255346471|gb|ACU05797.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] Length = 476 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 129/484 (26%), Positives = 245/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E C ++ +K+ + + +WF+ + + N++ + VP+ F W++ Y+ Sbjct: 1 MEKTCIEVWKNCLQIIKDNIPTQSFKTWFEPISALKLEGNVLTIQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + K +++ +E I+V + T + PS + P+ + K Sbjct: 61 GLLRKTVKKQLGDEGRLEYNIVVDKSSNSGSPYTTNMPSNGNGADAKKQSMPIPVSINKD 120 Query: 149 TISPVF---------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P L++ + F +IEG NR+A +A ++A NPL Sbjct: 121 IKNPFIIPGLKKLNVDPQLNANYTFENYIEGDCNRLARSAGYAVAAKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ VGLGKTHL QAI N + P+ V+Y++ E F +F ++++N + + + Sbjct: 177 MIYGGVGLGKTHLAQAIGNEIKRNMPDKLVIYVSCEKFCQQFVDSLKNNTINDFVNFYQA 236 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D++++DD+ GK Q F H+ N L S KQV+ ++D+ P +L L+ R+ SR + Sbjct: 237 MDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQVILSSDKAPKDLAGLEERLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L + D E R +IL+ ++ + + EV+ +VA + + REL+GA L Sbjct: 297 GLSADLQVPDLETRIAILRKKMYAD-----GIELPAEVVEYVAHNIDNNVRELEGAMVSL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + + + +A ++L + + +K++ +E IQ++V +++ + + + S R R Sbjct: 352 LAQSTLNKKDIDLALAKQMLKNFIKN-TSKEISMEYIQKLVCEYFEVPVDMVKSQTRKRE 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ++MYLSK T S IG FG RDH+TV++A + VE +++TD K V ++ Sbjct: 411 IVQARQISMYLSKSHTKSSLKTIGAFFGGRDHSTVIYACQTVEDLIDTDKKFKGYVHDIQ 470 Query: 498 RLIS 501 + + Sbjct: 471 KKLK 474 >gi|438884|gb|AAA26258.1| dnaA [Sinorhizobium meliloti] gi|755069|gb|AAA91097.1| dnaA [Sinorhizobium meliloti] Length = 507 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 296/484 (61%), Positives = 355/484 (73%), Gaps = 16/484 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYL+ Sbjct: 27 DMRHDALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLD 86 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI- 150 IT L Q+E S I VEILVR+ S+ Sbjct: 87 LITTLVQQEDSEILKVEILVRTATRGHRPTAPEESVAAAAEAAVVPPSRRSAAPTVAIAA 146 Query: 151 ------------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR NP Sbjct: 147 AAVAAAPARPVQAPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEA---GAGAVRFNP 203 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFIH+SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+SLR Sbjct: 204 LFIHSSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLR 263 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 NIDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQG Sbjct: 264 NIDLLIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQG 323 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 GV++ + DYEMR +LK RL ++++D L I E+L HVAR VT SGREL+GAFNQL Sbjct: 324 GVAIEMEGPDYEMRLEMLKRRLEAARQDDASLEIPLEILSHVARNVTASGRELEGAFNQL 383 Query: 379 VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +FR SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR R + Sbjct: 384 LFRRSFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRVVAKHYNVSRQELVSNRRTRVI 443 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKR Sbjct: 444 VKPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISADTKLSHEIELLKR 503 Query: 499 LISE 502 LI+E Sbjct: 504 LINE 507 >gi|313199778|ref|YP_004038436.1| chromosomal replication initiator protein dnaa [Methylovorus sp. MP688] gi|312439094|gb|ADQ83200.1| chromosomal replication initiator protein DnaA [Methylovorus sp. MP688] Length = 469 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 256/480 (53%), Gaps = 25/480 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ ++I R + ++ + +W + L F + ++ + L P F++ W+K+R+L I Sbjct: 2 ENFWSICLGRFEQELSAQQFNTWIKPLHFET-HNHTLRLFAPNRFVQQWVKDRFLPRIQN 60 Query: 96 LFQEEHSRIQGVEILVRSVALP-----SVEKTASS------PSITKLSPINTNISKSPII 144 L +E +E+ ++ ++ V KTAS+ + L + + Sbjct: 61 LAEELIQHPVEIELGLQDPSMKKQMAAPVVKTASADLKVEEAAAPFLQEPPAKKPAAKNV 120 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 K++ S L+S F F F+ G +N++A AA +AE Y NPLFI+ Sbjct: 121 ESKKSKPHGNPSGLNSAFNFDNFVTGRANQLARAAALQVAENPGTAY-----NPLFIYGG 175 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHLLQAI N +P+ ++ YL AE ++ A K ++DLLL Sbjct: 176 VGLGKTHLLQAIGNHLKMNRPDAKIRYLHAERYVSDVVKAYELKAFDEFKRQYHSLDLLL 235 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF + NSL+++ KQ++ D P E+ +D R+R+R G++V Sbjct: 236 IDDIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPKEIVDVDERLRTRFSWGLTVA 295 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + EMR +IL + + E+ K ++E+V +A+ V +S REL+GA N++V + Sbjct: 296 VEPPELEMRVAIL-----LKKAEEAKFVLHEDVAFFIAKQVRSSVRELEGALNRIVAMAN 350 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F + +A + L L+ +++ +E+IQ+ VA +Y I ++ S +R R RPR Sbjct: 351 FTGNPIDVHLAKDALKDLIAVR-GRQITMENIQKTVADYYKIKVAEMYSKKRSRNFARPR 409 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AM L++ +T SFPEIG FG R HTTV+HA +VE++ + D + +++ L ++I + Sbjct: 410 QIAMALARELTNHSFPEIGEAFGSRHHTTVMHACEEVEQLRQNDPNVARDIAFLTQVIRD 469 >gi|309751341|gb|ADO81325.1| Chromosomal replication initiator protein [Haemophilus influenzae R2866] Length = 454 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 156/472 (33%), Positives = 260/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P +P I + +P T S+S + ++ +P Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKP-------APKIVESTPNTTLRSESAVDFQTESSTP 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 IKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ LN+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|253997714|ref|YP_003049777.1| chromosomal replication initiator protein DnaA [Methylovorus sp. SIP3-4] gi|253984393|gb|ACT49250.1| chromosomal replication initiator protein DnaA [Methylovorus sp. SIP3-4] Length = 469 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 256/480 (53%), Gaps = 25/480 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ ++I R + ++ + +W + L F + ++ + L P F++ W+K+R+L I Sbjct: 2 ENFWSICLGRFEQELSAQQFNTWIKPLHFET-HNHTLRLFAPNRFVQQWVKDRFLPRIQN 60 Query: 96 LFQEEHSRIQGVEILVRSVALP-----SVEKTASS------PSITKLSPINTNISKSPII 144 L +E +E+ ++ ++ V KTAS+ + L + + Sbjct: 61 LAEELIQHPVEIELGLQDPSMKKQMAAPVVKTASADLKVEEAAAPFLQETPAKKPAAKNV 120 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 K++ S L+S F F F+ G +N++A AA +AE Y NPLFI+ Sbjct: 121 ESKKSKPHGNPSGLNSAFNFDNFVTGRANQLARAAALQVAENPGTAY-----NPLFIYGG 175 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHLLQAI N +P+ ++ YL AE ++ A K ++DLLL Sbjct: 176 VGLGKTHLLQAIGNHLKMNRPDAKIRYLHAERYVSDVVKAYELKAFDEFKRQYHSLDLLL 235 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF K Q EF + NSL+++ KQ++ D P E+ +D R+R+R G++V Sbjct: 236 IDDIQFFAKKSRTQEEFFYAFNSLIEAKKQIIITCDTYPKEIVDVDERLRTRFSWGLTVA 295 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + EMR +IL + + E+ K ++E+V +A+ V +S REL+GA N++V + Sbjct: 296 VEPPELEMRVAIL-----LKKAEEAKFVLHEDVAFFIAKQVRSSVRELEGALNRIVAMAN 350 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F + +A + L L+ +++ +E+IQ+ VA +Y I ++ S +R R RPR Sbjct: 351 FTGNPIDVHLAKDALKDLIAVR-GRQITMENIQKTVADYYKIKVAEMYSKKRSRNFARPR 409 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 Q+AM L++ +T SFPEIG FG R HTTV+HA +VE++ + D + +++ L ++I + Sbjct: 410 QIAMALARELTNHSFPEIGEAFGSRHHTTVMHACEEVEQLRQNDPNVARDIAFLTQVIRD 469 >gi|189423083|ref|YP_001950260.1| chromosomal replication initiation protein [Geobacter lovleyi SZ] gi|189419342|gb|ACD93740.1| Chromosomal replication initiator DnaA [Geobacter lovleyi SZ] Length = 459 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 145/469 (30%), Positives = 255/469 (54%), Gaps = 21/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ ++ L+ + P Y +W Q ++F ++ ++L VP F K W+++ Y++ I Sbjct: 10 HAVWNQTATNLEKVISPQNYTNWIQPIQFSHADNHSLYLIVPNQFFKEWLEDNYVDLINS 69 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + V L+R ++ ++P +P S + + +P+ Sbjct: 70 ALSVTADKNMLVTFLIRE------KEADNAPLEIMEAPQPKESSTLKDLDQAKETTPL-- 121 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 +PL+ R+ F F+ G+ N+ A AA +++ + Y NPLFI+ VGLGK+HLL A Sbjct: 122 NPLNPRYTFDQFVSGAGNQFAHAAAMAVSHNPAITY-----NPLFIYGGVGLGKSHLLNA 176 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + + I + ++ Y +AE FM + I+ N ++ R+ID+LLIDD+QF+ GK Sbjct: 177 VGHKIISDNSSTKICYCSAEKFMHEMVNCIKLNKMDEFRERFRSIDVLLIDDIQFITGKE 236 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ+V +D+ P E+ +L+ R+RSR + G+ + D E + + Sbjct: 237 RTQVEFFHTFNALYESHKQIVITSDKFPREMPNLEDRLRSRFEWGLIADIQPPDLETKIA 296 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIA 393 ILK + + ++ + ++V +A + T + REL+G +L S I +T +A Sbjct: 297 ILKK-----KADTNRILLPDDVAYFLASSDTRNIRELEGMLIRLGAYSSLQHIPITLTMA 351 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L ++ + K++ +E IQ+ VA H+ + DL S +R++ V RQVA++L + MT Sbjct: 352 QNNLKDIL-VNKRKEITVELIQKTVADHFGLKVADLKSEKRLKAFVLARQVAIWLCRDMT 410 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+P+IG RFG +DH+TV+HA +K+EK+L D L K ++ LK I + Sbjct: 411 TASYPDIGARFGGKDHSTVIHATKKIEKLLAEDHKLSKIIDELKESILQ 459 >gi|254476159|ref|ZP_05089545.1| chromosomal replication initiator protein DnaA [Ruegeria sp. R11] gi|214030402|gb|EEB71237.1| chromosomal replication initiator protein DnaA [Ruegeria sp. R11] Length = 459 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 167/462 (36%), Positives = 265/462 (57%), Gaps = 15/462 (3%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 VG + + +W + L+F V + +VPTNF+ ++ + + I F +Q + Sbjct: 2 KTVGQNNFTTWIEPLEFTRVDDGVAFFNVPTNFMGNYVSQNFADLILHEFNLSGEPVQRL 61 Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTN-------ISKSPIILGKQTISPVFGSPLDS 160 V + S + +P++ S +P K + +PLD Sbjct: 62 AFKVAANEAARPAARRSDVADVVETPMDAADDMAPRARSAAPSAAAKDLADTLQAAPLDP 121 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 RF F +F+ G N +A AA+ +AE V NPL ++ VGLGKTHL+ AIA Sbjct: 122 RFTFDSFVVGKPNELAHAAARRVAEG-----GPVTFNPLVLYGGVGLGKTHLMHAIAWEL 176 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 R P L V+YL+AE FM+RF A+R+ ++ K R++D+L++DD+QF+ GK Q E Sbjct: 177 KDRNPELNVLYLSAEQFMYRFVQALRERKMMDFKHLFRSVDVLMVDDVQFIAGKDSTQEE 236 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L+D KQ++ +ADR P E++ L+ R+RSRLQ G+ V L DYE+R IL+++ Sbjct: 237 FFHTFNALVDQNKQIIISADRAPGEIKDLEDRVRSRLQCGLVVDLHPTDYELRLGILQSK 296 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLS 398 +A + P L I + VL +A ++T+ R L+GA +L S + E+ + L+ Sbjct: 297 VAQQMQTYPDLRIADGVLEFLAHRISTNVRVLEGALTRLFAFASLVGREIDMELTQDCLA 356 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 ++ +K+ +E+IQR V+++YNI +D++ +R+R+ RPRQVAMYL K +T RS P Sbjct: 357 DVLRAS-ERKITVEEIQRKVSEYYNIRMSDIIGPKRLRSYARPRQVAMYLCKQLTSRSLP 415 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 EIGRRFG RDHTTV+H VR++E++ D + ++VE+L+R + Sbjct: 416 EIGRRFGGRDHTTVMHGVRRIEELKTIDGQIAEDVEMLRRAL 457 >gi|81251080|gb|ABB69881.1| DNA replication initiator protein [Nitrosospira sp. NIJS16] Length = 476 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 136/481 (28%), Positives = 241/481 (50%), Gaps = 27/481 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + + ++ + +W + L I+ L P F+ W+K +L Sbjct: 5 DTFWLACLEHFEKELSGQQFNTWIKPLHLELSPGSSEPILTLVAPNRFVLQWVKENFLGG 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ + R +++ + + ++ + + P+ + +L ++ Sbjct: 65 IEQMGENYFDRPIHLQLKLADQVMTTMGASGLENADMDSPPVAPAALDASAVLAQKASKD 124 Query: 153 VFG-----------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + S L+ F F+TF+ G +N++A A +AE Y NP FI Sbjct: 125 ITSNNIKEKREKNPSRLNPSFTFNTFVTGKANQLARAGAIQVAECPGVAY-----NPFFI 179 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+QAI N ++ P +V Y+ +E ++ A + + K ++D Sbjct: 180 YGGVGLGKTHLIQAIGNLVLEHNPGAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLD 239 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G+ Sbjct: 240 LLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEISGMEERLISRFGWGL 299 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + + + ++E V +A+ + ++ REL+GA ++V Sbjct: 300 TVAVEPPELEMRVAIL-----LKKASMEAIMLDESVAFFIAKHIRSNVRELEGALKRVVA 354 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F LT ++A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V Sbjct: 355 YSRFTGHALTLDLAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRSRVVA 413 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L + Sbjct: 414 RPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAINRDFNTLLHI 473 Query: 500 I 500 + Sbjct: 474 L 474 >gi|329123016|ref|ZP_08251587.1| DNA-directed DNA replication initiator protein [Haemophilus aegyptius ATCC 11116] gi|327471947|gb|EGF17387.1| DNA-directed DNA replication initiator protein [Haemophilus aegyptius ATCC 11116] Length = 454 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 153/471 (32%), Positives = 255/471 (54%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + ++PS T + + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKVVENAPSDTPKTESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILADKPNARVLYIHANNFMQHMIKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|229846051|ref|ZP_04466163.1| chromosomal replication initiation protein [Haemophilus influenzae 7P49H1] gi|229811055|gb|EEP46772.1| chromosomal replication initiation protein [Haemophilus influenzae 7P49H1] Length = 454 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 255/471 (54%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + S+P+ + S + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKIVESTPNTSLRSESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|148654189|ref|YP_001274394.1| chromosomal replication initiation protein [Roseiflexus sp. RS-1] gi|166215156|sp|A5UP91|DNAA_ROSS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|148566299|gb|ABQ88444.1| chromosomal replication initiator protein DnaA [Roseiflexus sp. RS-1] Length = 481 Score = 467 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 151/490 (30%), Positives = 248/490 (50%), Gaps = 36/490 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N ++ L+ Q+ Y +W + + + + + P F+K +++RYL Sbjct: 1 MNLTKVWNTTLGSLQVQLPRHEYNTWVRGATLLEIDNGVAIVRAPNAFIKEGLESRYL-- 58 Query: 93 ITKLFQEEHSRIQGVEILVRSV-ALPSVEKTASSP-----------SITKLSPINTNISK 140 +E+ + G + VR V A P E+ +P + P+ S Sbjct: 59 --ATLREQLGSVVGFPVDVRVVLASPDFERFDGAPHNGRSTENETRRTAQSLPLQPGSSS 116 Query: 141 SPIILGKQTISP--------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 + + + P V S L+ R+ F FI G SNR+A A ++AE + Y Sbjct: 117 NGVNHPLERTPPQQLELHRAVRSSMLNPRYTFDRFIIGPSNRLANAACMAVAEHPAQAY- 175 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPLF++ VGLGKTHLL AI N + R P + V+Y+++E F ++IR Sbjct: 176 ----NPLFLYGGVGLGKTHLLHAIGNFVLDRDPEVNVLYVSSETFTNDLINSIRRQQTEE 231 Query: 253 LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + RNID+LLIDD+QF+ GK Q EF H N+L + KQ+V ++DR P + +L+ R Sbjct: 232 FRIRYRNIDILLIDDIQFIAGKEQTQEEFFHTFNTLHSAGKQIVISSDRSPKAILTLEER 291 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSR + G+ V + + D E R +IL+ ++ E + + + V+ +A+ + + REL Sbjct: 292 LRSRFEWGLIVDVQMPDLETRTAILR-----AKAEQSPVPVPQPVIDFLAQRIQSHIREL 346 Query: 372 DGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +G N++ + +T E+A LS L++T K++ + I R VA Y++ L Sbjct: 347 EGCLNRVTAFAQMYNVPVTIEVATAALSELLDTNRRKRVTPDAILREVAAFYSVDLRALQ 406 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 R R +V PRQVAMYL + T S EIG+ G RDHTTV++ K+ + L +D L+ Sbjct: 407 GRSRSRNIVIPRQVAMYLLREETDSSLMEIGQLLGGRDHTTVMYGCEKITEELNSDARLR 466 Query: 491 KEVELLKRLI 500 +EV ++ + Sbjct: 467 QEVATIRERL 476 >gi|145634169|ref|ZP_01789880.1| chromosomal replication initiation protein [Haemophilus influenzae PittAA] gi|148826359|ref|YP_001291112.1| chromosomal replication initiation protein [Haemophilus influenzae PittEE] gi|145268613|gb|EDK08606.1| chromosomal replication initiation protein [Haemophilus influenzae PittAA] gi|148716519|gb|ABQ98729.1| chromosomal replication initiation protein [Haemophilus influenzae PittEE] Length = 454 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 157/472 (33%), Positives = 261/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P +P I + +P T S+S + ++ +P Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKP-------APKIVESTPNTTLRSESAVDFQTESNTP 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 IKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|293391841|ref|ZP_06636175.1| chromosomal replication initiator protein DnaA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952375|gb|EFE02494.1| chromosomal replication initiator protein DnaA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 453 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 152/473 (32%), Positives = 249/473 (52%), Gaps = 23/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S++ +L++++ D + W L+ + N V L F++ W+ + YL Sbjct: 1 MENRPNSLWQNCLLQLQDKIPADDFKIWLYPLQA-DINANGVLLYASNAFVQKWVVDNYL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT + ++ + ++ + P K + S K Sbjct: 60 PLITDIARQTSTNPNLNVSVIEGI----------KPVAPKAEKLAKKQSAVGFSEEKSAA 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+++ VF F+EG SN++A AQ +A+ NPLF++ GLGKT Sbjct: 110 KTPYHSNLNTKLVFENFVEGKSNQLARAVAQKVADNPGE----QTANPLFLYGGTGLGKT 165 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N I PN RVVY+ +E F+ + + IRDN K R++D LL+DD+QF Sbjct: 166 HLLHAIGNGIIANNPNARVVYIHSERFVQQVVAYIRDNKMEEFKKFYRSLDALLVDDIQF 225 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF H+ N+L + +Q++ +DR P E+E ++ R++SR G++ + D Sbjct: 226 FSDKEKTQEEFFHIFNTLFERGRQIILTSDRYPREIEKIEERLKSRFGWGLTTAIEPPDL 285 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + + E+ +++ +V + + + T+ REL+GA N++ F + Sbjct: 286 ETRVAIL-----MKKAEENNVDLPHDVAFFIGQKLRTNVRELEGALNRVKAMQEFKGEPI 340 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + E L ++ K + +++IQR+VA++Y I +DL S R R+V RPRQVAM L Sbjct: 341 TIDFVRETLKDMLALQ-DKLVTVDNIQRVVAEYYRIKVSDLKSKNRSRSVARPRQVAMAL 399 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T RS PEIG+ FGDRDHTTVLHA R + +TD ++++ L R++S Sbjct: 400 AKELTNRSLPEIGKSFGDRDHTTVLHACRTIAGFRDTDPNIQEDWANLIRILS 452 >gi|145628065|ref|ZP_01783866.1| chromosomal replication initiation protein [Haemophilus influenzae 22.1-21] gi|144979840|gb|EDJ89499.1| chromosomal replication initiation protein [Haemophilus influenzae 22.1-21] gi|301169719|emb|CBW29320.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Haemophilus influenzae 10810] Length = 454 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 155/472 (32%), Positives = 261/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ +L++QV ++W + L+ V +N + L F+K W++ YL Sbjct: 1 MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVSNNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P +P I + +P T S+S + ++ +P Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKP-------APKIVESTPNTTLRSESAVDFQTESSTP 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 IKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|227820588|ref|YP_002824558.1| chromosomal replication initiation protein [Sinorhizobium fredii NGR234] gi|227339587|gb|ACP23805.1| chromosomal replication initiator protein DnaA [Sinorhizobium fredii NGR234] Length = 480 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 297/483 (61%), Positives = 358/483 (74%), Gaps = 16/483 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYLE Sbjct: 1 MRHDALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLEL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG------ 146 IT LFQ+E I VEILVR+ P + Sbjct: 61 ITSLFQQEDGEILKVEILVRTATRGQRPAVHEEAVAAAAEPAAAAPVRRAASPQPVAAAA 120 Query: 147 -------KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 K +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR NPL Sbjct: 121 ATVAASAKPVQAPLFGSPLDQRYNFESFVEGSSNRVALAAARTIAEA---GAGAVRFNPL 177 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FIH+SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+SLRN Sbjct: 178 FIHSSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRN 237 Query: 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 IDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQGG Sbjct: 238 IDLLVIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGG 297 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 V++ + DY+MR +LK RL ++++D L+I +E+L HVAR+VT SGREL+GAFNQL+ Sbjct: 298 VAIEMEGPDYDMRLEMLKRRLDTARQDDTSLDIPQEILSHVARSVTASGRELEGAFNQLL 357 Query: 380 FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 FR SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR R +V Sbjct: 358 FRRSFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRIVAKHYNVSRQELVSNRRTRVIV 417 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 +PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKRL Sbjct: 418 KPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISGDTKLSHEIELLKRL 477 Query: 500 ISE 502 I+E Sbjct: 478 INE 480 >gi|81251104|gb|ABB69899.1| DNA replication initiator protein [Nitrosomonas sp. OZK11] Length = 458 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 241/470 (51%), Gaps = 21/470 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLET 92 E+ + K ++ + +W + LK NI+ L P F+ WIK+ ++ Sbjct: 4 TETFWHSCLKHFKQELNGQQFNTWIKPLKLEVCPDEENILVLIAPNRFVLQWIKDNFVTR 63 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ + + +R P E A+ P K+PII K+ Sbjct: 64 IDEMALAHFNEKIRFRLELRE--SPETETAATKPVQKSKVEKKPVAEKTPIIASKKNNP- 120 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F F F+ G +N++A A +AE Y NPLFI+ VGLGKTHL Sbjct: 121 ---SQLNPGFTFDAFVTGKANQLARAGAIQVAERPGIAY-----NPLFIYGGVGLGKTHL 172 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N + ++ Y+ AE ++ SA + K ++DLLL+DD+QF Sbjct: 173 MQAIGNCVLDLDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQFFS 232 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF + N+L+++ KQV+ +D P E+ L+ R+ SR G++V + + EM Sbjct: 233 GKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPELEM 292 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + K+ ++E +A+ + ++ REL+GA +++ F +T Sbjct: 293 RVAIL-----LKKAHAEKIALDENTAFFIAKYIRSNVRELEGALKRILAFSRFTGHPITL 347 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L L+ +++ IE+IQ+ VA +Y I D+ S +RVRT+ RPRQVAM ++K Sbjct: 348 DLAKEALKDLLAIQ-NRQISIENIQKTVADYYKIKVADMYSKKRVRTIARPRQVAMAIAK 406 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG RDHTTVLHA RK+ ++ +D + ++ L ++ Sbjct: 407 ELTQLSLPDIGEAFGGRDHTTVLHAHRKIIELRTSDPGINRDFNALMHIL 456 >gi|323137249|ref|ZP_08072328.1| chromosomal replication initiator protein DnaA [Methylocystis sp. ATCC 49242] gi|322397607|gb|EFY00130.1| chromosomal replication initiator protein DnaA [Methylocystis sp. ATCC 49242] Length = 500 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 221/485 (45%), Positives = 312/485 (64%), Gaps = 22/485 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +S + V RL+ ++G VY SWF RL+ V +HL+VPT FLK+W+++ Y I Sbjct: 18 QSRWERVRQRLRAELGDAVYNSWFTRLELERVDDKSMHLTVPTKFLKSWVQSHYAPRIKA 77 Query: 96 LFQEEHSRIQGVEILVRSVALPS------VEKTASSPS---ITKLSPINTNIS------- 139 E + ++ V I VRS A + E ++P+ K SP + S Sbjct: 78 RVANEFAAVERVVIDVRSSARKAKVREGAAEHENNAPASLFADKASPAPSQESIDGAASF 137 Query: 140 -KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 ++ + GSPLD R FSTF+ G SN++A AA +AE + NP Sbjct: 138 RRAARSAPRTDNETFIGSPLDRRLSFSTFLVGPSNQLAYAAACRVAE--ARPGDAPIFNP 195 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+ HA+VGLGKTHLLQA+A+AS + R +YLTAE FM F S++ ++ K+ LR Sbjct: 196 LYAHAAVGLGKTHLLQALAHASNDNR--RRAIYLTAERFMSGFVSSLNAQTSIAFKERLR 253 Query: 259 NIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFLQGK IQ EFCH LN+L+D+ +QVV AADRPPSELE+LD R+ SR +G Sbjct: 254 AIDMLIIDDVQFLQGKSIQQEFCHTLNALIDAGRQVVVAADRPPSELETLDERVLSRFKG 313 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ V +G D +R +L R+A +Q+ P ++ EV+ +VART+ T+GR+L+GA N+L Sbjct: 314 GLCVDIGPLDESLRMKMLNARIAAAQESQPGFHVPPEVVAYVARTIVTNGRDLEGAVNRL 373 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + LT E A+ + LV + + ++++I+DIQ++VA HYNISR D+LS+RR Sbjct: 374 LAHVTLNGAPLTIETAETAIRDLVRSQDPRRVKIDDIQKLVASHYNISRADILSSRRTAN 433 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VVRPRQ+AMYLSK+MT RS PEIGRRFG RDHTTVLHAVRK+E+++ D +L + +ELLK Sbjct: 434 VVRPRQIAMYLSKVMTLRSLPEIGRRFGGRDHTTVLHAVRKIEELVSKDKSLAEVIELLK 493 Query: 498 RLISE 502 R++SE Sbjct: 494 RILSE 498 >gi|260581928|ref|ZP_05849724.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae NT127] gi|260095121|gb|EEW79013.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae NT127] Length = 454 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 153/471 (32%), Positives = 254/471 (53%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + ++P+ + S + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKVVENTPNTSLRSESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ LN+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|145637299|ref|ZP_01792960.1| chromosomal replication initiation protein [Haemophilus influenzae PittHH] gi|145269551|gb|EDK09493.1| chromosomal replication initiation protein [Haemophilus influenzae PittHH] Length = 454 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 155/471 (32%), Positives = 255/471 (54%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + S+P+ T S + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKIVESTPNTTLRSESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|255532251|ref|YP_003092623.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] gi|255345235|gb|ACU04561.1| chromosomal replication initiator protein DnaA [Pedobacter heparinus DSM 2366] Length = 476 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 124/484 (25%), Positives = 247/484 (51%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +++ C ++ +K+ + + +WF+ + + ++ + VP+ F W++ Y+ Sbjct: 1 MQITCTQVWNNCLQIIKDNIPAQSFKTWFEPISALKLEDKVLTVQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + K +++ +E I+V + ++ T + PS + P+ + + Sbjct: 61 GLLRKTVKQQLGDEGRLEYNIVVDKSSNGALPYTTNMPSNGNGAGNKKQSMPVPVNINRD 120 Query: 149 TISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P L+ + F ++EG NR+A +A ++A NPL Sbjct: 121 IKNPFVIPGLKKMNVDPQLNPGYTFEAYVEGDCNRLARSAGHAVAAKPG----ATSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ S GLGKTHL QAI N + P+ V+Y++ E F +F ++++N + + + Sbjct: 177 MIYGSSGLGKTHLAQAIGNEIRRNLPDKLVIYVSCEKFCQQFVESLKNNTINDFVNFYQA 236 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ SR + Sbjct: 237 MDVIIMDDVHNFAGKEKTQDIFFHIFNHLHQSGKQIIITSDKAPKDLSGLEERLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L + + E R +IL+ ++ +++ +EV+ +VA + + REL+GA L Sbjct: 297 GLSADLQVPELETRIAILRKKMYAD-----GIDLPDEVVEYVAHNIDNNVRELEGAMVSL 351 Query: 379 VFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + + + ++A +L + + TK++ I+ IQ++V ++ + + L + R R Sbjct: 352 LAQSTMNRKEIDLQLAKSMLKNFIKN-TTKEVSIDYIQKLVCDYFEVPVHLLKAPTRKRE 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ++MYL+K MT S IG FG RDH+TV++A + VE +++TD + V ++ Sbjct: 411 VVQARQISMYLAKGMTKSSLKTIGAFFGGRDHSTVIYACQTVEDLIQTDKKFRAYVNDIE 470 Query: 498 RLIS 501 + + Sbjct: 471 KKLK 474 >gi|309791068|ref|ZP_07685604.1| chromosomal replication initiator protein DnaA [Oscillochloris trichoides DG6] gi|308226923|gb|EFO80615.1| chromosomal replication initiator protein DnaA [Oscillochloris trichoides DG6] Length = 462 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 236/470 (50%), Gaps = 15/470 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N I+ ++ Q Y +W + ++ + + + F K ++NR++ Sbjct: 1 MNLTQIWQAALGAIQLQTSRQDYETWLRGTTLLALDGGLATVGTTSTFHKEGLENRFMAP 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + V +++ + +E + +L+ + S + S Sbjct: 61 VRRSLGDVVGYPVQVRVVIANGTANRIENYG---PLLELASNSEESESSDRAVQLDLSSA 117 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ FS FI GSSNR+A A ++A+ Y NPLF++ VGLGKTHL Sbjct: 118 MRTGMLNPKYTFSRFIVGSSNRLAHAACLAVADNPGQHY-----NPLFLYGGVGLGKTHL 172 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + R P + V+Y+++E F +AIR + RNID+LL+DD+QF+ Sbjct: 173 LHAIGNYVLDRDPEINVLYVSSEKFTNDMINAIRRQQTEEFRMRYRNIDVLLVDDIQFIA 232 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L +AK +V ++D+PP + +L+ R+RSR + G+ + D E Sbjct: 233 GKEGTQEEFFHTFNTLHSAAKHIVISSDKPPKAIPTLEERLRSRFEWGLIADIQPPDLET 292 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTA 390 R +IL+ + E + I EV+ +A V ++ REL+G+ N++ + Sbjct: 293 RTAILRT-----KGEQMNVEIPNEVIDFLAHKVQSNIRELEGSLNRVAAFAEQHGLPINV 347 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A L+ L+ + +++ + + V++H+ + L R R +V PRQVAMYL + Sbjct: 348 EVATSALADLLGSARRRRITPDQVILAVSEHFGVDLRILQGRGRSRNIVVPRQVAMYLLR 407 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S +IG+ G RDHTTV++ K+ + + TD L+ EV ++ + Sbjct: 408 EETECSLVDIGKLLGGRDHTTVMYGCDKISEEINTDNRLRNEVLSIRERL 457 >gi|90415378|ref|ZP_01223312.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2207] gi|90332701|gb|EAS47871.1| chromosomal replication initiation protein [marine gamma proteobacterium HTCC2207] Length = 523 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 160/504 (31%), Positives = 264/504 (52%), Gaps = 45/504 (8%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVH------------LSVPTN 79 E E ++ + +L +++ + +W + L+ + L P Sbjct: 30 ESALEGVWADCTKQLSDELPAQQFNTWIRPLRAQLFDAYVDVDLNGAGVPQRVQLVAPNR 89 Query: 80 FLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP------------------SVEK 121 F++ W++N++L I +LF + + V ++ +S P SVE Sbjct: 90 FIEDWVQNKFLTRIEQLFVQFGAGQCTVAVVSQSEKAPVFKASAAPKGNTARPVLNSVES 149 Query: 122 TASSPSITKLSPINTNISKSPIILG--KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 A S + +P T + + S L+S F F +F+EG SN++AL A Sbjct: 150 VAEQQSSSGFAPQETPVIQRIQAPAIITSAAEHSLKSNLNSAFTFDSFVEGKSNQLALAA 209 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 AQ +AE Y NPLFI+ VGLGKTHL+ A+ NA R+P+ ++VYL +E F+ Sbjct: 210 AQQVAENPGGSY-----NPLFIYGGVGLGKTHLMHAVGNALRMRKPDAKIVYLHSERFVA 264 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 A++ K R++D LLIDD+QF GK Q EF H N+LL+ +Q++ Sbjct: 265 DMVKALQLKAIDEFKQFYRSVDALLIDDIQFFAGKERSQEEFFHTYNALLERGQQMILTC 324 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DR P E+ ++ R++SR G++V + + E R +IL I++ E + ++ + Sbjct: 325 DRYPKEINGVEERLKSRFGWGLTVAVEPPELETRVAIL-----INKAEQAGIELSRDAAF 379 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA +++ F ++ ++ E L L+ K + I++IQR+ Sbjct: 380 FIAQRIRSNVRELEGALKRVMAHAQFSGRVIDIDLIRESLKDLLALQ-DKLVTIDNIQRV 438 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA +Y + +DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA R Sbjct: 439 VADYYKLKMSDLLSKRRSRSVARPRQIAMALAKDLTNYSLPEIGESFGGRDHTTVLHACR 498 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 KV+++ TD ++++++ L R +S Sbjct: 499 KVKELEATDRDVERDLKNLYRTLS 522 >gi|309973507|gb|ADO96708.1| Chromosomal replication initiator protein [Haemophilus influenzae R2846] Length = 454 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 255/471 (54%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ +L++QV ++W + L+ V +N + L F+K W++ YL Sbjct: 1 MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVSNNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + S+P+ T S + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKIVESTPNTTLRSESAVDFQTESSTSVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|237747155|ref|ZP_04577635.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes HOxBLS] gi|229378506|gb|EEO28597.1| chromosomal replication initiator protein dnaA [Oxalobacter formigenes HOxBLS] Length = 460 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 138/469 (29%), Positives = 240/469 (51%), Gaps = 14/469 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S+L+ ++ P Y++W + L ++ ++ P F W+K +Y + IT Sbjct: 2 ENFWQNCLSQLELELTPQQYSAWIKPLVPLDYNDRVLRIAAPNRFKLDWVKTQYADRITA 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP-INTNISKSPIILGKQTISPVF 154 L + V+ ++ + S SP P + P Sbjct: 62 LASQFLDASVEVQFILNPQSRASSSVKTVSPLAKAELPSAEADPDAIPHKAPVMETPVRE 121 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S +++ F +F+ G +N++A AA +A Y NPL++ VGLGKTHL+ Sbjct: 122 QSRINAEMTFDSFVTGKANQLARAAAIQVANNPGVSY-----NPLYLFGGVGLGKTHLIH 176 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ R+ Y+ AE ++ +A + + K ++D+LLIDD+QF GK Sbjct: 177 AIGNQVLQDIPSARIRYIHAEQYVRDVVTAYQRKGFDDFKRYYHSLDMLLIDDIQFFSGK 236 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +L+ + KQ++ +D P E+ +D R+ SR G++V + + EMR Sbjct: 237 NRTQEEFFYAFEALIAARKQIIITSDTYPKEISGMDDRLTSRFDSGLTVAIEPPELEMRV 296 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL I + + ++++V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 297 AIL-----IKKAGQEGIQLSDDVAFFVAKHLRSNVRELEGALRKILAFSRFHGRDITIEL 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L++ +++ +E+IQ+ VA + I D+ S RR + RPRQ+AMYL+K + Sbjct: 352 TKEALKDLLSVQ-NRQISVENIQKTVADFFRIKVADMYSKRRPANIARPRQIAMYLTKEL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + + E+ +L++ + Sbjct: 411 TQKSLPEIGELFGGRDHTTVLHAVRKIAQDRLKNPECNHELHVLEQTLK 459 >gi|90420502|ref|ZP_01228409.1| chromosomal replication initiator DnaA [Aurantimonas manganoxydans SI85-9A1] gi|90335230|gb|EAS48983.1| chromosomal replication initiator DnaA [Aurantimonas manganoxydans SI85-9A1] Length = 505 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 255/487 (52%), Positives = 335/487 (68%), Gaps = 24/487 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 I V++RLK Q+G D++ASWFQR+K + + ++VPT FL++WI++ Y E +T++ Sbjct: 22 DIMERVNARLKAQLGQDIFASWFQRMKLEAPGKGVCRITVPTAFLRSWIQSHYHELLTEI 81 Query: 97 FQEEHSRIQGVEILVRSVALP-----SVEKTASSPSITKLSPINTNISKS---------- 141 F+EE V+I VRS + A P T+ + Sbjct: 82 FREEVPGTLRVDIAVRSAVRGGGVTIRQPRVAEQPETTRTRAAAPRPAAQIGESRAARSA 141 Query: 142 ------PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + +P FGSPLD R+VF T +EGSSNRVAL A ++IAE G +VR Sbjct: 142 APAEARQMFDAAPAPTPTFGSPLDPRYVFDTLVEGSSNRVALAAGRAIAEN---GPQSVR 198 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLFIHA+VGLGKTHLLQAIANA+I+R+ RVVYLTAEYFMWRFA+AIRDN AL+LK+ Sbjct: 199 FNPLFIHAAVGLGKTHLLQAIANAAIRREDKPRVVYLTAEYFMWRFATAIRDNRALDLKE 258 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 +LR ID+L+IDD QFLQGK IQ EFCHLLN+L+DSAKQV+ AADRP ELESLDPR+RSR Sbjct: 259 TLRGIDILIIDDTQFLQGKSIQQEFCHLLNALIDSAKQVICAADRPAMELESLDPRVRSR 318 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L G+++ L DYEMR SI++ R A + EDP ++ + V+ +A+ V SGR+L+GAF Sbjct: 319 LSNGITLELAAPDYEMRRSIIRTRAAAMRAEDPSFDMPDGVIDTIAQRVAGSGRDLEGAF 378 Query: 376 NQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 NQ+ FRHS L+AE D+LLS L +++RIEDI + V++HYN++R D+LS RR Sbjct: 379 NQIAFRHSLGQPLSAEHLDDLLSQLTRANSERRVRIEDILKFVSRHYNVTRTDILSARRT 438 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 RT+VRPRQ+AMYL+K MTPRS PEIGRRFG RDHTTVLHAVRK+E D L +E+++ Sbjct: 439 RTIVRPRQIAMYLAKTMTPRSLPEIGRRFGGRDHTTVLHAVRKIEGERAKDDKLSEELDI 498 Query: 496 LKRLISE 502 ++R+I E Sbjct: 499 IRRMIEE 505 >gi|145638185|ref|ZP_01793795.1| chromosomal replication initiation protein [Haemophilus influenzae PittII] gi|145272514|gb|EDK12421.1| chromosomal replication initiation protein [Haemophilus influenzae PittII] Length = 454 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 152/471 (32%), Positives = 254/471 (53%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + ++P+ + S + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKVVENTPNTSLRSESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ LN+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|210624036|ref|ZP_03294153.1| hypothetical protein CLOHIR_02105 [Clostridium hiranonis DSM 13275] gi|210153243|gb|EEA84249.1| hypothetical protein CLOHIR_02105 [Clostridium hiranonis DSM 13275] Length = 462 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 147/472 (31%), Positives = 263/472 (55%), Gaps = 25/472 (5%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ S++ V LK +V + ++F +K + ++ +++ ++F K + NRY Sbjct: 13 NMDINSLWEKVLQILKGEVSAAAFKAFFATVKPLLLHNDTLYICANSDFNKDILNNRYSS 72 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + +E +R + +L + S+ K S ++++KSP K Sbjct: 73 ILAGVVKEVTARDIKIVVLDNEKEMDSILKEIDSNP-------KSSVAKSPKAPTK---- 121 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + S L+ ++ F TF+ G+SN A A ++AE + Y NPLF++ VGLGKTH Sbjct: 122 --YESNLNPKYTFDTFVIGNSNSFAHAACVAVAESPAKSY-----NPLFLYGGVGLGKTH 174 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + ++ +VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF+ Sbjct: 175 LMQAIGHHILEADSTQKVVYVSSEKFTNELVNSIKDDKNEEFRNKYRNVDVLLIDDVQFI 234 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D+E Sbjct: 235 AGKERTQEEFFHTFNTLHEANKQIIISSDRPPKDIPTLEERLRSRFEMGLITDIQPPDFE 294 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL+ + + E + +EV ++A+ V ++ REL+GA +++ S ++ Sbjct: 295 TRIAILRKKAQMDNTE-----VPDEVTDYIAKNVKSNIRELEGALTRVMAYSSLTKKKVS 349 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A E L ++ + T ++ + I+ VA+ ++I D S +R R + PRQ+AMYLS Sbjct: 350 LEVATEALKDIIVSYNTSEINVVRIKEKVAEVFDIKMEDFNSKKRTRAIAYPRQIAMYLS 409 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IG FG RDHTTV+HA K+ K L+ +I LK +VE + + Sbjct: 410 RDLTDLSLPKIGEEFGGRDHTTVIHACDKISKDLKENIDLKLKVEKIINDLK 461 >gi|16272931|ref|NP_439156.1| chromosomal replication initiation protein [Haemophilus influenzae Rd KW20] gi|260580084|ref|ZP_05847914.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae RdAW] gi|319897495|ref|YP_004135692.1| chromosomal replication initiator protein dnaa, DNA-binding transcriptional dual regulator [Haemophilus influenzae F3031] gi|1169364|sp|P43742|DNAA_HAEIN RecName: Full=Chromosomal replication initiator protein DnaA gi|1574023|gb|AAC22655.1| chromosomal replication initiator protein (dnaA) [Haemophilus influenzae Rd KW20] gi|260093368|gb|EEW77301.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae RdAW] gi|317433001|emb|CBY81372.1| chromosomal replication initiator protein DnaA,DNA-binding transcriptional dual regulator [Haemophilus influenzae F3031] Length = 454 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 255/471 (54%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + S+P+ + S + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKIVESTPNTSLRSESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|229843947|ref|ZP_04464088.1| chromosomal replication initiation protein [Haemophilus influenzae 6P18H1] gi|229812941|gb|EEP48629.1| chromosomal replication initiation protein [Haemophilus influenzae 6P18H1] Length = 454 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 153/471 (32%), Positives = 254/471 (53%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + S+P+ + S + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKIVESTPNTSLRSESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ LN+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|148828164|ref|YP_001292917.1| chromosomal replication initiation protein [Haemophilus influenzae PittGG] gi|148719406|gb|ABR00534.1| chromosomal replication initiation protein [Haemophilus influenzae PittGG] Length = 454 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 154/472 (32%), Positives = 260/472 (55%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P +P + + +P + S+S + ++ +P Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKP-------APKVVENTPNTSLRSESAVDFQTESSTP 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 IKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|300865784|ref|ZP_07110539.1| Chromosomal replication initiator protein dnaA [Oscillatoria sp. PCC 6506] gi|300336225|emb|CBN55694.1| Chromosomal replication initiator protein dnaA [Oscillatoria sp. PCC 6506] Length = 452 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 136/471 (28%), Positives = 243/471 (51%), Gaps = 28/471 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E ++ V RL+ Q+ + +W + + +N + + P F + W++ Y++T Sbjct: 1 MRLEILWNQVLERLQVQLSRPTFETWIKTASPEQLENNCLIIRTPNPFARNWLQKYYIKT 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ ++ I G + + L E T + + I SP I + Sbjct: 61 IAQVVED----ILGHSVDIYLTTLNGDETTNNGSEL---------IWPSPDIPESHSHQQ 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ +++F+ F+ GS+NR+A A+ ++AE NPLF+ VGLGKTHL Sbjct: 108 PKPANLNPKYIFARFVVGSNNRMAHAASLAVAESPGR-----EFNPLFLCGGVGLGKTHL 162 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI + ++ P+ ++ Y++ E F +AIR + + +D+ R D+LL+DD+QF++ Sbjct: 163 MQAIGHYRLEIDPDAKIFYVSTEKFTNDLIAAIRKDSMQSFRDNYRAADVLLVDDIQFIE 222 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ+V A+DRPP+++ L R+ SR G+ + L D E Sbjct: 223 GKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQIPRLQERLCSRFSMGLIADIQLPDLET 282 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R +IL+ + E + + +V+ ++A + ++ REL+GA + V + I Sbjct: 283 RMAILQK-----KAEYENMRLPRDVIEYIASSYKSNIRELEGALIRAVA---YLSITGLP 334 Query: 392 IADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E L+ ++N + + + I V +++S +L N R R + RQV MYL + Sbjct: 335 MTVENLAPILNPQTERLEASPDAILTAVGDVFDLSVEELKGNSRRREISLARQVGMYLMR 394 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG +DHTTVL++ K+ ++ TD L + + L I+ Sbjct: 395 QHTDLSLPKIGEVFGGKDHTTVLYSCDKIAQLRNTDPNLSQTLRQLGDRIN 445 >gi|126697567|ref|YP_001086464.1| chromosomal replication initiator protein [Clostridium difficile 630] gi|254977343|ref|ZP_05273815.1| chromosomal replication initiator protein [Clostridium difficile QCD-66c26] gi|255094673|ref|ZP_05324151.1| chromosomal replication initiator protein [Clostridium difficile CIP 107932] gi|255102900|ref|ZP_05331877.1| chromosomal replication initiator protein [Clostridium difficile QCD-63q42] gi|255308720|ref|ZP_05352891.1| chromosomal replication initiator protein [Clostridium difficile ATCC 43255] gi|255316427|ref|ZP_05358010.1| chromosomal replication initiator protein [Clostridium difficile QCD-76w55] gi|255519087|ref|ZP_05386763.1| chromosomal replication initiator protein [Clostridium difficile QCD-97b34] gi|255652270|ref|ZP_05399172.1| chromosomal replication initiator protein [Clostridium difficile QCD-37x79] gi|255657639|ref|ZP_05403048.1| chromosomal replication initiator protein [Clostridium difficile QCD-23m63] gi|260681770|ref|YP_003213055.1| chromosomal replication initiator protein [Clostridium difficile CD196] gi|296452680|ref|ZP_06894371.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP08] gi|296880067|ref|ZP_06904036.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP07] gi|306521985|ref|ZP_07408332.1| chromosomal replication initiator protein [Clostridium difficile QCD-32g58] gi|115249004|emb|CAJ66815.1| Chromosomal replication initiator protein [Clostridium difficile] gi|260207933|emb|CBA60042.1| chromosomal replication initiator protein [Clostridium difficile CD196] gi|296258462|gb|EFH05366.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP08] gi|296428934|gb|EFH14812.1| DNA-directed DNA replication initiator protein [Clostridium difficile NAP07] Length = 439 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 132/471 (28%), Positives = 256/471 (54%), Gaps = 35/471 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ S++ +K + + ++F+ + + N + L P++F K ++NRYL Sbjct: 1 MDIVSLWDKTLQLIKGDLTSVSFNTFFKNIVPLKIHLNDLILLAPSDFNKDILENRYLHL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ ++ + + ++ + L P Sbjct: 61 IEDAISQLSLKKYNIKFVLSEKEVADLNSDSTDLNYRVLYP------------------- 101 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F TF+ G+SNR A A ++AE + Y NPLF++ VGLGKTHL Sbjct: 102 ----NLNPKYTFDTFVIGNSNRFAHAACVAVAESPAKAY-----NPLFLYGGVGLGKTHL 152 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + ++ + +VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF+ Sbjct: 153 MHAIGHHIVSQKKDSKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIA 212 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D+E Sbjct: 213 GKERTQEEFFHTFNTLHEANKQIIISSDRPPKDIPTLEDRLRSRFEMGLITDIQAPDFET 272 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + + ++++ EV+ ++A+ + ++ REL+GA ++V S +++ Sbjct: 273 RIAILRK-----KAQLERIDVPNEVMSYIAKNIKSNIRELEGALTRVVAYSSLSNRVISF 327 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L ++ T + +++ + I+ V+ +N+ D S +R R++ PRQ+AMYL++ Sbjct: 328 DLATEALKDIITTSKNEEINVLRIKEKVSSVFNLKMEDFNSKKRTRSIAYPRQIAMYLTR 387 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG FG RDHTTV+HA KV K +E +K +++ + + Sbjct: 388 ELTDLSLPKIGEEFGGRDHTTVIHAHDKVSKDIEESEEIKTKIDKIISDLK 438 >gi|68249578|ref|YP_248690.1| chromosomal replication initiation protein [Haemophilus influenzae 86-028NP] gi|68057777|gb|AAX88030.1| chromosomal replication initiator protein DnaA [Haemophilus influenzae 86-028NP] Length = 454 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 256/471 (54%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q + + I ++ P+ + ++P+I+ S + K Sbjct: 61 IQQICQTLTQNPE-LRISLKEGVKPAPKVVENTPNISLRSESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|14195656|sp|P35890|DNAA_RHIME RecName: Full=Chromosomal replication initiator protein DnaA Length = 480 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 296/483 (61%), Positives = 354/483 (73%), Gaps = 16/483 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++F VS+RLK QVGPDV+ASWF RLK HSV ++V LSVPT FLK+WI NRYL+ Sbjct: 1 MRHDALFERVSARLKAQVGPDVFASWFGRLKLHSVSKSVVRLSVPTTFLKSWINNRYLDL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI-- 150 IT L Q+E S I VEILVR+ S+ Sbjct: 61 ITTLVQQEDSEILKVEILVRTATRGHRPTAPEESVAAAAEAAVVPPSRRSAAPTVAIAAA 120 Query: 151 -----------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P+FGSPLD R+ F +F+EGSSNRVAL AA++IAE G VR NPL Sbjct: 121 AVAAAPARPVQAPLFGSPLDQRYGFDSFVEGSSNRVALAAARTIAEA---GAGAVRFNPL 177 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FIH+SVGLGKTHLLQAIA A+++ RVVYLTAEYFMWRFA+AIRDN AL+LK+SLRN Sbjct: 178 FIHSSVGLGKTHLLQAIALAALQSARAPRVVYLTAEYFMWRFATAIRDNDALSLKESLRN 237 Query: 260 IDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 IDLL+IDDMQFLQGK IQHEFCHLLN LLDSAKQVV AADR P ELESLD R+RSRLQGG Sbjct: 238 IDLLIIDDMQFLQGKSIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDSRVRSRLQGG 297 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 V++ + DYEMR +LK RL ++++D L I E+L HVAR VT SGREL+GAFNQL+ Sbjct: 298 VAIEMEGPDYEMRLEMLKRRLEAARQDDASLEIPLEILSHVARNVTASGRELEGAFNQLL 357 Query: 380 FRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 FR SF P L+ E DELL HLVN GE +++RIEDIQR+VAKHYN+SR +L+SNRR R +V Sbjct: 358 FRRSFEPQLSIERVDELLGHLVNAGEPRRVRIEDIQRVVAKHYNVSRQELVSNRRTRVIV 417 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 +PRQ+AMYLSK +TPRSFPEIGRRFG RDHTTVLHAVRK+E+++ D L E+ELLKRL Sbjct: 418 KPRQIAMYLSKTLTPRSFPEIGRRFGGRDHTTVLHAVRKIEELISADTKLSHEIELLKRL 477 Query: 500 ISE 502 I+E Sbjct: 478 INE 480 >gi|71905643|ref|YP_283230.1| chromosomal replication initiator protein DnaA [Dechloromonas aromatica RCB] gi|123760693|sp|Q47K71|DNAA_DECAR RecName: Full=Chromosomal replication initiator protein DnaA gi|71845264|gb|AAZ44760.1| chromosomal replication initiator protein, DnaA [Dechloromonas aromatica RCB] Length = 465 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 236/473 (49%), Gaps = 21/473 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVL---HNIVHLSVPTNFLKAWIKNRYLETIT 94 + R + ++ + +W + L+ + + L P F+ W+++RYL I Sbjct: 4 FWESCLQRFEQELPAQQFNTWIKPLRLEGESTALEDGLRLIAPNGFILKWVRDRYLTRIE 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI---- 150 + + +++ S + A++ + +P N + + Sbjct: 64 DYSRTFFEGPVTIALVIGSGKATAARIQATTTDSGQNAPANPATTSEKRTAASEKARGKG 123 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S S L F F + G +N +A AA +A Y NPLFI+ GLGKT Sbjct: 124 SNYEKSRLFPSFTFDNLVVGKANDLARAAAVQVANNPGGAY-----NPLFIYGGAGLGKT 178 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI N P V Y+ AE + A + + K + R++D+LL+DD+QF Sbjct: 179 HLIHAIGNTIATENPEKIVRYVHAEDYYSDVVRAYQQKSFDSFKRTYRSLDVLLLDDVQF 238 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF L N+L+++ KQ++ D P ++ LD R+ +R G++V + + Sbjct: 239 FNGKNRSQEEFFFLFNALIEARKQIIITCDTYPKDINGLDDRLVTRFDWGLTVQIEPPEL 298 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 EMR +ILK + E + +++EV +A+ + ++ REL+GA +++ SF ++ Sbjct: 299 EMRVAILKK-----KAEAEGIQLDDEVAFFIAKHLRSNVRELEGALKKVLAYSSFHGRVI 353 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A E L ++ + + + +++IQ+ VA +Y I +L S +R R + RPRQVAM+L Sbjct: 354 ALDLAKEALKDVIGS--VRNVGMDNIQKTVADYYKIKVAELFSKKRTRAIARPRQVAMWL 411 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T SFPEIG FG RDHTTV+HAV+ ++ + + L ++ +L +++ Sbjct: 412 CREVTSHSFPEIGDAFGGRDHTTVIHAVKTIDSLRIKENELNHDLHVLLQVLK 464 >gi|281418689|ref|ZP_06249708.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum JW20] gi|281407773|gb|EFB38032.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum JW20] Length = 443 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 146/472 (30%), Positives = 249/472 (52%), Gaps = 34/472 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + I+ LKN++ + +W + + S+ N ++L+VP F K +++RY Sbjct: 1 MNTQLNEIWQKTLGLLKNELTEISFNTWIKTIDPLSLTGNTINLAVPAEFNKGILESRYQ 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I ++ + + +V P N++K Sbjct: 61 TLIKNAIKQVTFKEYEIAFIV---------------------PSQENLNKLTKQTESAGN 99 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SNR A AA ++AE Y NPLFI+ VGLGKT Sbjct: 100 EDSPLSVLNPKYTFDTFVIGNSNRFAHAAALAVAEAPGKAY-----NPLFIYGGVGLGKT 154 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + +++ + RV+Y+++E F +AI+DN + RNID+LLIDD+QF Sbjct: 155 HLMHAIGHYILEQNSSQRVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQF 214 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK + EF H N+L ++ KQ++ ++D+PP E+ L+ R+RSR + G+ + D Sbjct: 215 IAGKERTEEEFFHTFNALYEANKQIILSSDKPPKEIS-LEDRLRSRFEWGLIADMQAPDL 273 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + + L + EV++ +A + ++ REL+GA N+++ S + Sbjct: 274 ETRIAILRK-----KAQLENLTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEI 328 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L +++ + K + IQ VA++++I + S +R R + PRQ+AMYL Sbjct: 329 TVELASEALKDILSANKAKVLNCTTIQEAVARYFDIRPEEFKSKKRTRDIAFPRQIAMYL 388 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ K +E++ ++ V +KR + Sbjct: 389 CRELTEMSLPKIGEEFGGRDHTTVIHACEKISKEIESNSETRRAVSEIKRNL 440 >gi|256003888|ref|ZP_05428875.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum DSM 2360] gi|255992226|gb|EEU02321.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum DSM 2360] gi|316939067|gb|ADU73101.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum DSM 1313] Length = 443 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 145/472 (30%), Positives = 249/472 (52%), Gaps = 34/472 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + I+ LKN++ + +W + + S+ N ++L+VP F K +++RY Sbjct: 1 MNTQLNEIWQKTLGLLKNELTEISFNTWIKTIDPLSLTGNTINLAVPAEFNKGILESRYQ 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I ++ + + +V P N++K Sbjct: 61 TLIKNAIKQVTFKEYEIAFIV---------------------PSQENLNKLTKQTESAGN 99 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SNR A AA ++AE Y NPLFI+ VGLGKT Sbjct: 100 EDSPLSVLNPKYTFDTFVIGNSNRFAHAAALAVAEAPGKAY-----NPLFIYGGVGLGKT 154 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + +++ + RV+Y+++E F +AI+DN + RNID+LLIDD+QF Sbjct: 155 HLMHAIGHYILEQNSSQRVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQF 214 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK + EF H N+L ++ KQ++ ++D+PP E+ L+ R+RSR + G+ + D Sbjct: 215 IAGKERTEEEFFHTFNALYEANKQIILSSDKPPKEIS-LEDRLRSRFEWGLIADMQAPDL 273 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + + L + EV++ +A + ++ REL+GA N+++ S + Sbjct: 274 ETRIAILRK-----KAQLENLTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEI 328 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L +++ + K + IQ VA++++I + S +R R + PRQ+AMYL Sbjct: 329 TVELASEALKDILSANKAKVLNCTTIQEAVARYFDIRPEEFKSKKRTRDIAFPRQIAMYL 388 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ + +E++ ++ V +KR + Sbjct: 389 CRELTEMSLPKIGEEFGGRDHTTVIHACEKISEEIESNSETRRAVSEIKRNL 440 >gi|312142409|ref|YP_003993855.1| chromosomal replication initiator protein DnaA [Halanaerobium sp. 'sapolanicus'] gi|311903060|gb|ADQ13501.1| chromosomal replication initiator protein DnaA [Halanaerobium sp. 'sapolanicus'] Length = 473 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 149/477 (31%), Positives = 257/477 (53%), Gaps = 17/477 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFH-SVLHNIVHLSVPTNFLKAWIKNRYL 90 + I+ ++K ++ + +WF K + N + L VP NF++ WI+ +Y+ Sbjct: 5 QKELNHIWEKTLEKIKEKITNPSFNTWFSETKAVLTTKENQLVLQVPNNFIQEWIETQYI 64 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI--ILGKQ 148 I + + + +L EK A + + + + ++ LG+Q Sbjct: 65 NLIEDILNDLTGNEWSLLLLTPKEVKKFKEKQAENKKVHSKNNNTDLMDETDDFDDLGEQ 124 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + + ++ F TF+ G+SNR A A+ ++AE + Y NPLFI+ VGLG Sbjct: 125 EDEEKLNNGFNPKYTFDTFVVGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGDVGLG 179 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAIA+ +K P+ +VVY+++E F ++I+D+ ++ +D RNID+LL+DD+ Sbjct: 180 KTHLMQAIAHFILKNNPDYKVVYVSSETFTNELINSIKDDSTVDFRDKYRNIDILLVDDI 239 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q EF H N+L +S +Q++ ++DRPP E+ +L+ R+RSR + G+ + Sbjct: 240 QFLAGKERTQEEFFHTFNTLHESNRQLIISSDRPPKEIPTLEERLRSRFEWGLITDIQKP 299 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 D E R +IL+ + + L I EV++++A + ++ REL+GA +++ S Sbjct: 300 DLETRIAILRK-----KADIENLTIPNEVVIYIANKIQSNIRELEGALVKVIAYSSLVDR 354 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH--YNISRNDLLSNRRVRTVVRPRQV 444 + E+A E L LVN + + + + + YN+ D+ S +R + + PRQ+ Sbjct: 355 EIDIELAREALKDLVNKKKDEHIEVNIERIKKIIIEDYNLRMEDMESKKRTQNIAFPRQI 414 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYLS+ +T S P IG FG RDHTTV+HA K+++ ++ + K++E L I Sbjct: 415 AMYLSRELTDFSLPHIGDEFGGRDHTTVIHAHNKIKEKIKNEEDFSKKIERLTNTIK 471 >gi|313678901|ref|YP_004056640.1| chromosomal replication initiator protein dnaa [Oceanithermus profundus DSM 14977] gi|313151616|gb|ADR35467.1| chromosomal replication initiator protein DnaA [Oceanithermus profundus DSM 14977] Length = 442 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 156/467 (33%), Positives = 247/467 (52%), Gaps = 34/467 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + ESI+ V ++ V + +WF R+K + + L VPT+F WI+ Y Sbjct: 1 MTHESIWENVLDYVRENVTSVEFDTWFARVKPLGLTGGALELGVPTSFAGDWIQKHYGHL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + A SP + + + + Sbjct: 61 IQEALLRLG---------------------AQSPEFRLKVVPGEVVQDKILEEDARAPAA 99 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ F +F+ G N +A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 100 APRTRLNPKYTFESFVVGPGNSMAHAAAMAVAEAPGKAY-----NPLFIYGGVGLGKTHL 154 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + + +R P +RV Y++ E F SAIR + ++ R++D+LL+DD+QF+ Sbjct: 155 MHAVGHYARQRFPEIRVEYVSTETFTNDLISAIRSDRMNQFRERYRSVDMLLVDDVQFIA 214 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + KQ++ +DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 215 GKERTQEEFFHTFNTLYEDGKQILLTSDRPPREILTLESRLRSRFEWGLITDIQPPDLET 274 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK E + ++EEVL +VAR V ++ REL+GA +L+ S + + +T Sbjct: 275 RIAILK-----MNAERRGVQLSEEVLEYVARQVASNIRELEGALMRLIAYASLSGVTITP 329 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A L+ L +T + + +++I VA+HY ++ DL S R + VVRPRQVAMYL + Sbjct: 330 KVAQNALADLFHTA-GEAVTMDEILAAVAEHYGVTPADLKSKGRSKEVVRPRQVAMYLIR 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +T S PEIG+ FG RDHTTVL+A +K+ K+L D L++ VE + Sbjct: 389 QLTGASLPEIGQFFGGRDHTTVLYATQKIGKLLAEDAELRRTVEAFE 435 >gi|81251084|gb|ABB69884.1| DNA replication initiator protein [Nitrosospira sp. NIJS18] Length = 476 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 135/481 (28%), Positives = 241/481 (50%), Gaps = 27/481 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + + ++ + +W + L I+ L P F+ W+K +L Sbjct: 5 DTFWLACLEHFEKELSGQQFNTWIKPLHLELSPGSSEPILTLVAPNRFVLQWVKENFLGG 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + R +++ + + ++ + + P+ + +L ++ Sbjct: 65 MEQMGENYFDRPIHLQLKLADQVMTTMGASGLENADMDSPPVAPAALDASAVLAQKASKD 124 Query: 153 VFG-----------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + S L+ F F+TF+ G +N++A A +AE Y NP FI Sbjct: 125 ITSNNIKEKREKNPSRLNPSFTFNTFVTGKANQLARAGAIQVAECPGVAY-----NPFFI 179 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+QAI N ++ P +V Y+ +E ++ A + + K ++D Sbjct: 180 YGGVGLGKTHLIQAIGNLVLEHNPGAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLD 239 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G+ Sbjct: 240 LLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEISGMEERLISRFGWGL 299 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + + + ++E V +A+ + ++ REL+GA ++V Sbjct: 300 TVAVEPPELEMRVAIL-----LKKASMEAIMLDESVAFFIAKHIRSNVRELEGALKRVVA 354 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F LT ++A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V Sbjct: 355 YSRFTGHALTLDLAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRSRVVA 413 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L + Sbjct: 414 RPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAINRDFNTLLHI 473 Query: 500 I 500 + Sbjct: 474 L 474 >gi|145632379|ref|ZP_01788114.1| chromosomal replication initiation protein [Haemophilus influenzae 3655] gi|144987286|gb|EDJ93816.1| chromosomal replication initiation protein [Haemophilus influenzae 3655] Length = 454 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 153/471 (32%), Positives = 254/471 (53%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + S+P+ + S + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKIVESTPNTSLRSESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILADKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|327402012|ref|YP_004342850.1| chromosomal replication initiator protein DnaA [Fluviicola taffensis DSM 16823] gi|327317520|gb|AEA42012.1| chromosomal replication initiator protein DnaA [Fluviicola taffensis DSM 16823] Length = 476 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 138/484 (28%), Positives = 253/484 (52%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N ++I+ +K+ + Y +WF+ + + +N++ + VP++F W++ Y+ Sbjct: 1 MSANHDAIWNSCLKVIKDNLPIQAYKTWFEPIVPVKLENNVLTIQVPSHFFYEWLEEHYI 60 Query: 91 ETITKLFQEEHSRIQGVEILV------RSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + K+ ++E + +E + + +V+ AS+ K +P+N ++ S Sbjct: 61 TLLKKVIKKELGQEGHLEYSIVMENSASNSNPYTVKLPASNKKAVKNAPMNMPLNISDNP 120 Query: 145 LGKQTISP-----VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + I P S L+ + F F+EG NR+A +A ++A NPL Sbjct: 121 IKNPFIIPGLKKVNVDSNLNPAYSFENFVEGDCNRLARSAGYAVANKPG----GTAFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ VGLGKTHL +I + PN V+Y+++E F +F A+R+ + + Sbjct: 177 LIYGGVGLGKTHLAHSIGIGVKNQFPNKTVLYVSSEKFAHQFIDAVRNQTTNDFIHFYQM 236 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QF GK Q F H+ N L + KQ++ +D+PP E++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFFSGKEKTQDVFFHIFNHLHQNGKQIILTSDKPPVEMQGMEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L D E R +I++ ++ S + + EV+ ++A ++ T+ RE++GA L Sbjct: 297 GLSADLSTPDLETRIAIMEKKMYGS-----GIELPREVVEYLAYSINTNIREMEGAMTSL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + S +T ++A +++ V +++ I+ IQ++V ++++ L S R R Sbjct: 352 LAQASLNKKAITLDLAKQMIDKFVKN-TAREVSIDYIQKVVCDYFDLPIEMLKSKTRKRE 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ++MY SK MT S IG G +DH TVLHA R V + ETD + +E L+ Sbjct: 411 VVQARQISMYFSKKMTKSSLASIGAHCGGKDHATVLHACRTVLNLSETDKQFRVYLEDLE 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|89069837|ref|ZP_01157172.1| chromosomal replication initiation protein [Oceanicola granulosus HTCC2516] gi|89044638|gb|EAR50754.1| chromosomal replication initiation protein [Oceanicola granulosus HTCC2516] Length = 452 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 156/472 (33%), Positives = 272/472 (57%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + V ++ VG + +W + L F ++ ++ SVPT F+ ++ Y + Sbjct: 1 MMTQDEWINVKQEMRGAVGESKFTNWIEPLVFETLRDGVLTCSVPTLFIGNYVNQNYADQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I L ++ + +VR+ ++ P+ + +++S Sbjct: 61 IVYLLARAGQEVERLSFVVRNDETAGPQQQKQQPAAPAAAGARRGVAES----------- 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ R+ F TF+ G N +A AA+ +AE Y NPLF++ GLGKTHL Sbjct: 110 ---ARLEERYTFDTFVVGKPNALAHAAARRVAEGGPVAY-----NPLFLYGGNGLGKTHL 161 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AIA+ + +P L V+YL+A+ FM+RF +A+R+ ++ K R++D+L++DD+QF+ Sbjct: 162 MHAIAHDMRQNRPELDVLYLSADQFMYRFVTALRERKMMDFKHFFRSVDVLMVDDVQFIA 221 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D+ KQ+V +AD P E+ L+ RI SRL G+ V L DYE+ Sbjct: 222 GKDSTQEEFFHTFNALADAGKQIVISADCAPGEIRDLENRISSRLASGLVVDLHPTDYEL 281 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R IL++++ + + P+L + + VL +A ++ + R L+G+ +L S + Sbjct: 282 RLGILQSKVEQYRSQHPELVVADGVLEFLAHRISNNVRVLEGSLTRLFAFASLVGKEINL 341 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ + L+ ++ +K+ I++IQR V++HYNI +DL+ RR+R+ RPRQ+AM+LSK Sbjct: 342 ELTQDCLADILRAS-DRKITIDEIQRKVSEHYNIRLSDLIGPRRMRSYARPRQIAMWLSK 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T RS PEIG+RFG RDHTT++H VRK++++ +TD + +++E+L+R + + Sbjct: 401 QLTNRSLPEIGKRFGGRDHTTIMHGVRKIDELRQTDSAISEDLEMLRRTLEQ 452 >gi|294851411|ref|ZP_06792084.1| chromosomal replication initiator protein DnaA [Brucella sp. NVSL 07-0026] gi|294820000|gb|EFG36999.1| chromosomal replication initiator protein DnaA [Brucella sp. NVSL 07-0026] Length = 566 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 67 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 126 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 127 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 186 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 187 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 246 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 247 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 303 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 304 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 363 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 364 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 423 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 424 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 483 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 484 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 543 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 544 VGADTKLAQELELLKRLIND 563 >gi|125974856|ref|YP_001038766.1| chromosomal replication initiation protein [Clostridium thermocellum ATCC 27405] gi|166201880|sp|A3DHZ4|DNAA_CLOTH RecName: Full=Chromosomal replication initiator protein DnaA gi|125715081|gb|ABN53573.1| chromosomal replication initiator protein DnaA [Clostridium thermocellum ATCC 27405] Length = 443 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 144/472 (30%), Positives = 249/472 (52%), Gaps = 34/472 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + I+ LKN++ + +W + + S+ N ++L+VP F K +++RY Sbjct: 1 MNTQLNEIWQKTLGLLKNELTEISFNTWIKTIDPLSLTGNTINLAVPAEFNKGILESRYQ 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I ++ + + +V P N++K Sbjct: 61 TLIKNAIKQVTFKEYEIAFIV---------------------PSQENLNKLTKQTESAGN 99 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G+SNR A AA ++AE Y NPLFI+ VGLGKT Sbjct: 100 EDSPLSVLNPKYTFDTFVIGNSNRFAHAAALAVAEAPGKAY-----NPLFIYGGVGLGKT 154 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + +++ + +V+Y+++E F +AI+DN + RNID+LLIDD+QF Sbjct: 155 HLMHAIGHYILEQNSSQKVLYVSSEKFTNELINAIKDNRNEEFRSKYRNIDVLLIDDIQF 214 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK + EF H N+L ++ KQ++ ++D+PP E+ L+ R+RSR + G+ + D Sbjct: 215 IAGKERTEEEFFHTFNALYEANKQIILSSDKPPKEIS-LEDRLRSRFEWGLIADMQAPDL 273 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +IL+ + + L + EV++ +A + ++ REL+GA N+++ S + Sbjct: 274 ETRIAILRK-----KAQLENLTVPNEVIVFIADKIASNIRELEGALNRVIAYSSLTENEI 328 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L +++ + K + IQ VA++++I + S +R R + PRQ+AMYL Sbjct: 329 TVELASEALKDILSANKAKVLNCTTIQEAVARYFDIRPEEFKSKKRTRDIAFPRQIAMYL 388 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG FG RDHTTV+HA K+ + +E++ ++ V +KR + Sbjct: 389 CRELTEMSLPKIGEEFGGRDHTTVIHACEKISEEIESNSETRRAVSEIKRNL 440 >gi|284034944|ref|YP_003384874.1| chromosomal replication initiator protein DnaA [Spirosoma linguale DSM 74] gi|283814237|gb|ADB36075.1| chromosomal replication initiator protein DnaA [Spirosoma linguale DSM 74] Length = 469 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 142/476 (29%), Positives = 242/476 (50%), Gaps = 20/476 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ +++ + ++ V + +WF+ + + +++ + VP+ F W++ ++ Sbjct: 1 MQREVTTVWNRCLNVIREIVPEQSFNTWFEPIVPLRLNGHVLTIQVPSEFFYEWLEENFV 60 Query: 91 ETITKLFQEEHSRIQGVEILV-------RSVALPSVEKTASSPSITKLSPINTNISKSPI 143 + K R +E + ++ L T S +K +N +I KSP Sbjct: 61 HALRKALDTAIGRDGQLEYSIIVDKGNEQNRPLTVNVPTTKSTQTSKPDNVNPDILKSPF 120 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 L K S S L+ + F ++EG NR+A +A ++AE NPL I+ Sbjct: 121 QL-KDLDSLTLDSYLNPSYTFDNYVEGDCNRLARSAGYAVAERPG----VTSFNPLMIYG 175 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+QAI N V+Y+T+E F +F +A+R + + +D+L Sbjct: 176 GVGLGKTHLVQAIGNFIKNNNQGKFVLYVTSEKFTNQFLNAVRSDGIRDFTSFYMQVDVL 235 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+QFLQ K Q F H+ N L S KQ++ +DR P L+ L+ R+ SR + G+S Sbjct: 236 VIDDVQFLQKKEKTQEIFFHIFNHLHQSGKQIIMTSDRAPRALDGLEDRLLSRFKWGLSA 295 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 L D E R +I++ +L + I++ V+ ++A +V T+ REL+G L+ + Sbjct: 296 DLQTPDLETRIAIIQKKLQAE-----GIYIDDTVIEYLAHSVNTNVRELEGVIVSLMAQA 350 Query: 383 SFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 S + E+A + L ++V +++ I+ +Q VA +N++ DL + R R +V P Sbjct: 351 SLNRREIDLELAKQTLRNIV-VDSDREVTIDSVQEAVASFFNVTIADLKAKSRKRELVHP 409 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 RQ+AMYL+K T S IG FG RDH+TV+HAV+ V ++ + +E LK Sbjct: 410 RQIAMYLAKEKTDLSLKSIGYHFGGRDHSTVIHAVQTVSDLVAKHAETRDIIEKLK 465 >gi|237814482|ref|ZP_04593480.1| chromosomal replication initiator protein DnaA [Brucella abortus str. 2308 A] gi|237789319|gb|EEP63529.1| chromosomal replication initiator protein DnaA [Brucella abortus str. 2308 A] Length = 566 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 67 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 126 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 127 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 186 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 187 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 246 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 247 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 303 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 304 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 363 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 364 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 423 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 424 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 483 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 484 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 543 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 544 VGADTKLAQELELLKRLIND 563 >gi|169830220|ref|YP_001716202.1| chromosomal replication initiation protein [Candidatus Desulforudis audaxviator MP104C] gi|169637064|gb|ACA58570.1| chromosomal replication initiator protein DnaA [Candidatus Desulforudis audaxviator MP104C] Length = 445 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 149/468 (31%), Positives = 250/468 (53%), Gaps = 33/468 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 SI+ + L+ V Y W + L+ + + + + VP +F + W+ RY + Sbjct: 8 SIWQQLMQGLEKSVNRQSYDYWLKPLRPAAYHNKTLLIEVPNHFSRDWLHERYAPLLKHS 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F+ ++ L+ P V+K S P + + S Sbjct: 68 FETLAGHEVAIKFLLAREV-PEVKKYLSRPLDKLSTDL---------------------S 105 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ ++ F +F+ G+SNR A AA ++A+ Y NPLF++ VGLGKTHL+ AI Sbjct: 106 ALNPKYTFDSFVVGNSNRFAHAAAFAVADTPVKAY-----NPLFLYGGVGLGKTHLMHAI 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 + + R+ Y+T+E F +AI+D+ + R+ID+LLIDD+QFL GK Sbjct: 161 GHHILGNHSRYRIAYVTSERFTNDLINAIKDDQTPQFRSKYRSIDILLIDDIQFLAGKER 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL + AKQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +I Sbjct: 221 TQEEFFHTFNSLYEDAKQIVISSDRPPKEIPTLEERLRSRFEWGLITDIQPPDLETRIAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIAD 394 L+ +L + + +E ++++A + ++ REL+GAF ++ S I++ E A Sbjct: 281 LRKKLQSEENSL----VPDETILYIADRIQSNIRELEGAFIRVSAYASLNRTIVSPENAA 336 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+L +++ + K++ IQ++VA +Y + DL + +R R V PRQ+AMYL++ +T Sbjct: 337 EILKNILPPHKPKQITCSLIQQVVAGYYKLRPEDLKAKKRTRNVAYPRQIAMYLTRELTD 396 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S P+IG FG RDHTTVLHA K+ + ++ D ++++ + L R I + Sbjct: 397 LSLPKIGDEFGGRDHTTVLHACEKINQEIQADPSVQEIINELIRRIQK 444 >gi|300021540|ref|YP_003754151.1| chromosomal replication initiator protein DnaA [Hyphomicrobium denitrificans ATCC 51888] gi|299523361|gb|ADJ21830.1| chromosomal replication initiator protein DnaA [Hyphomicrobium denitrificans ATCC 51888] Length = 506 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 194/510 (38%), Positives = 305/510 (59%), Gaps = 19/510 (3%) Query: 5 EVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKF 64 + A + V A+ T V+ +E + V + L+ Q+G ++Y+SWF+ L+F Sbjct: 2 QAAKTAEAQGVSGAQGTAVVETATGSVEGRGQ----KVRAMLRAQLGEEIYSSWFKSLEF 57 Query: 65 HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTAS 124 +V +SVP F++ WI+ Y E + + E + + VE++ R + + Sbjct: 58 EDFDGRVVKVSVPVKFVRNWIQEHYAERLLHCSRVEFATAERVEVVWRQPGVAVQRPAEA 117 Query: 125 SPSITKLSPI-----------NTNISKSPIILGKQTISP-VFGSPLDSRFVFSTFIEGSS 172 P T ++ + P++ ++T + + GSPLD R+ F +F+ G+S Sbjct: 118 RPETTIAEKAPAAASQAEAPPRVSVLRPPVLPAQRTSAGGLEGSPLDPRYTFDSFVVGAS 177 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR+A A +AE NPL+IH++VGLGK+HLLQAIA +R P+ +V+YL Sbjct: 178 NRMAHAGATQVAET--VLTDAPGYNPLYIHSAVGLGKSHLLQAIAWEVKRRAPSAQVLYL 235 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAK 292 TAE F ++F A+R + L K+ RNI +LLIDD++FLQG+ + EF H++N+LLD K Sbjct: 236 TAERFRYQFVEALRSSDPLAFKERFRNIHMLLIDDLEFLQGERTEQEFDHIINALLDGGK 295 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QVV A+ R P+++E L+ R+RSRLQ G+ L D+E+R +L+ RL + DP + Sbjct: 296 QVVVASARAPNQIERLNERMRSRLQRGLVTELIPLDHELRLKVLEKRLGEKRAADPSFTL 355 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRI 411 + +V+ +A +T +GREL+GA +L + +T +IA+ ++ LV E ++++I Sbjct: 356 SRDVVDLLAMRLTENGRELEGAITRLYATWQYMRTPITLDIAETVIRDLVQNLEPRRIKI 415 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 EDI R++++HY +S+ DLLS RR R+VV PRQ+ MYL+K +T RS PEIGRRFG RDHTT Sbjct: 416 EDILRIISRHYGVSKGDLLSQRRHRSVVWPRQIGMYLAKHLTARSLPEIGRRFGGRDHTT 475 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHA+RK+E + + L E+E LKRL++ Sbjct: 476 VLHAIRKIEGEITKNPHLGDELEELKRLLN 505 >gi|310825634|ref|YP_003957991.1| chromosomal replication initiator protein [Eubacterium limosum KIST612] gi|308737368|gb|ADO35028.1| chromosomal replication initiator protein [Eubacterium limosum KIST612] Length = 449 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 143/473 (30%), Positives = 247/473 (52%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + I+ S +K ++ Y +WF K ++ +L +F + ++ RY Sbjct: 1 MDDSIVKIWEKALSLIKEEMSELSYNTWFTNTKPLKIIGGTFYLISDNDFERGMLETRYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT + + V+I++ +P + + +P+ N T Sbjct: 61 ALITNALSQVMEQECKVQIVLSEKEVPD--------TAEQSAPMPKNEGN--------TK 104 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S G ++ ++ F F+ G +NR A A +++E S Y NPLFI+ VGLGKT Sbjct: 105 SSNNGGSMNPKYTFEKFVIGENNRFAHAACVAVSEAPSERY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI N + P +VVY++ E F F AI++ ++ ++ RN+D+LLIDD+QF Sbjct: 160 HLMQAIGNYILSYAPTKKVVYVSCEKFTNEFIDAIQNQNNIDFRNKYRNVDILLIDDIQF 219 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L + KQ+V ++DRPP E+ L+ R+RSR + G+ + ++ Sbjct: 220 LAGKDGTQEEFFHTFNALHEENKQIVISSDRPPKEIPKLEERLRSRFEMGLITDISAPNF 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + ++E I +VL +A ++ ++ REL+GA +V + Sbjct: 280 ETRIAILRKKAESYKEE-----IPNDVLSFIADSIHSNIRELEGALTTVVAYSKLHGEPI 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E A + L + E + I+ M AK++N++ D+ S +R + + PRQVAMYL Sbjct: 335 CLETAKDALKDIFKAKENIVINSTYIKEMTAKYFNVTIEDIDSKKRTKAISLPRQVAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IG FG RDH+TV+HA +K+ + +E + K + +++ I+ Sbjct: 395 TRDLTDLSLPKIGEEFGGRDHSTVIHACQKINEEMEANTDFKNLIIRIQKEIT 447 >gi|83308727|emb|CAJ01637.1| putative chromosomal replication initiator protein dnaA [Methylocapsa acidiphila] Length = 508 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 226/504 (44%), Positives = 312/504 (61%), Gaps = 30/504 (5%) Query: 25 DVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAW 84 D+ E + + RL+ ++G DV++SWF RL+ + +LSVPT FLK+W Sbjct: 9 DLTSPITTATKEEAWMRICRRLRIELGDDVFSSWFGRLELDELSETSAYLSVPTKFLKSW 68 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALP----------SVEKTASSPSITKLSPI 134 I++ Y E I K E + V I VRS P K+ + K P Sbjct: 69 IQSHYAEKIQKALIGEFPSVSSVTIAVRSSTRPMPGRRPGPMERANKSDARTEGDKAPPP 128 Query: 135 NTNISKSPIILGKQTISPV---------------FGSPLDSRFVFSTFIEGSSNRVALTA 179 + +S + L ++ +P GSPLD R FS F+ G SN++A A Sbjct: 129 PSAYGRSEVRLAVESKTPERLAKASVDGAEAEIYVGSPLDRRLNFSNFLVGKSNQLAHAA 188 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 AQ +A + + NPL++HASVGLGKTHLLQA+A+A+ RV+YLTAE FM+ Sbjct: 189 AQRVA--STEPGEPLTYNPLYLHASVGLGKTHLLQAVAHAA--SDVTRRVIYLTAEKFMY 244 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAAD 299 F SA++ A+ K+ LR ID+L+IDD+QFLQGK IQ EFCH LN+L+D+ +Q+V AAD Sbjct: 245 GFVSALKAQTAIAFKERLRGIDVLVIDDIQFLQGKSIQQEFCHTLNALIDARRQIVIAAD 304 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 RPP +LESLD R+RSRL GG+ V +G D +R IL+ R+A +Q ++ V+ + Sbjct: 305 RPPGDLESLDERVRSRLAGGLCVEMGGLDEALRVKILETRIAAAQAVHSNFDVPPAVIAY 364 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 VA + T+GR+LDGA N+L+ S + L E A+ + LV T E K+++IEDIQ++V Sbjct: 365 VASVIQTNGRDLDGAVNRLLAHASLSGAPLGVETAELAIRDLVRTHEPKRIKIEDIQKLV 424 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A H+N+SR D+LS+RR VVRPRQ+AMYLSKI+T RS PEIGRRFG RDHTTVLHAVRK Sbjct: 425 ASHFNVSRADILSSRRTANVVRPRQIAMYLSKILTLRSLPEIGRRFGGRDHTTVLHAVRK 484 Query: 479 VEKMLETDITLKKEVELLKRLISE 502 +E + +D TL +E+ELLKR++ E Sbjct: 485 IEALTTSDGTLSEEIELLKRMLME 508 >gi|285016822|ref|YP_003374533.1| chromosomal replication initiator protein DnaA [Xanthomonas albilineans GPE PC73] gi|283472040|emb|CBA14547.1| probable chromosomal replication initiator protein dnaa [Xanthomonas albilineans] Length = 445 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 154/468 (32%), Positives = 243/468 (51%), Gaps = 26/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + + +W + L+ N + L P F+ + RYL I +L Sbjct: 2 DAWPRCLERLEAEFPAEDVHTWLKPLQAEQRHDNSMVLYAPNAFIVEQVHARYLSRIREL 61 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 ++L++ + P + P+ + + F Sbjct: 62 LNYFAGSE---DVLLQVGSRPRAPE-----------PMAAASDSTTARTPSPQLLEPFAG 107 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 108 NLDSHYTFANFVEGRSNQLGLAAAVQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 163 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA ++ PN RV+YL +E F A+++ K + +D LLIDD+QF GK Sbjct: 164 GNAMREQNPNARVMYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDALLIDDIQFFAGKDR 223 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 224 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 283 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I +EV +A+ + ++ R+L+GA N L R +F +T E A Sbjct: 284 V-----LAKARERGAEIPDEVAFLIAKKMRSNVRDLEGALNTLAARANFTGRAITTEFAQ 338 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQ+AM L+K +T Sbjct: 339 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQIKDLLSKRRTRSLARPRQMAMALTKELTE 397 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R+++ ++ETD L+++ + L R +SE Sbjct: 398 HSLPEIGDAFAGRDHTTVLHACRQIKHLMETDGKLREDWDKLIRKLSE 445 >gi|227550640|ref|ZP_03980689.1| DNA-directed DNA replication initiator protein [Enterococcus faecium TX1330] gi|257888095|ref|ZP_05667748.1| chromosomal replication initiator protein [Enterococcus faecium 1,141,733] gi|257896287|ref|ZP_05675940.1| chromosomal replication initiator protein [Enterococcus faecium Com12] gi|257899271|ref|ZP_05678924.1| chromosomal replication initiator protein [Enterococcus faecium Com15] gi|293379368|ref|ZP_06625512.1| chromosomal replication initiator protein DnaA [Enterococcus faecium PC4.1] gi|293572718|ref|ZP_06683682.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E980] gi|227180241|gb|EEI61213.1| DNA-directed DNA replication initiator protein [Enterococcus faecium TX1330] gi|257824149|gb|EEV51081.1| chromosomal replication initiator protein [Enterococcus faecium 1,141,733] gi|257832852|gb|EEV59273.1| chromosomal replication initiator protein [Enterococcus faecium Com12] gi|257837183|gb|EEV62257.1| chromosomal replication initiator protein [Enterococcus faecium Com15] gi|291607210|gb|EFF36568.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E980] gi|292641891|gb|EFF60057.1| chromosomal replication initiator protein DnaA [Enterococcus faecium PC4.1] Length = 444 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 136/470 (28%), Positives = 242/470 (51%), Gaps = 31/470 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ ++++ + + + + P Y +W + ++ N + + VP+ K + + Sbjct: 2 VSLDALWNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATK 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ + A +P + SP+ + Sbjct: 62 IVEVGYMLSGNEIIPRFITGEEAEQEEVVEEKNPKVAAPSPLKKAM-------------- 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL Sbjct: 108 -----LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + ++ QPN +V Y+++E F F ++I++ A + RN+DLLL+DD+QF Sbjct: 158 MHAIGHQMLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFA 217 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L + KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 218 EKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLET 277 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + A + E I ++ L ++A + ++ REL+GA ++ + ++ Sbjct: 278 RTAILRKKAAAERLE-----IPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDIST 332 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + L L + ++ I IQ VAK+Y+I DL +RV+++V PRQ+AMYL++ Sbjct: 333 SLAADALKTLKSGKGHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLAR 392 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTV+HA K+++++++ ++++ EV +K + Sbjct: 393 ELTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFL 442 >gi|68171134|ref|ZP_00544543.1| chromosomal replication initiator protein, DnaA [Ehrlichia chaffeensis str. Sapulpa] gi|88658026|ref|YP_507606.1| chromosomal replication initiation protein [Ehrlichia chaffeensis str. Arkansas] gi|123722775|sp|Q2GG27|DNAA_EHRCR RecName: Full=Chromosomal replication initiator protein DnaA gi|67999459|gb|EAM86099.1| chromosomal replication initiator protein, DnaA [Ehrlichia chaffeensis str. Sapulpa] gi|88599483|gb|ABD44952.1| chromosomal replication initiator protein DnaA [Ehrlichia chaffeensis str. Arkansas] Length = 464 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 174/478 (36%), Positives = 274/478 (57%), Gaps = 27/478 (5%) Query: 25 DVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAW 84 D K L+ + + I+ + +L G +Y SW L + + V LS PT F+K W Sbjct: 11 DCVKEKLQSDNQVIWKDIQVKLHKFYGNAIYDSWLSVLVYINNEGGKVLLSAPTRFIKEW 70 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 I YL+ I K +Q+E + V+I V + ++ ++ ++S Sbjct: 71 ILVHYLDQILKYWQDEDQSVCSVDICVVNNQDTNLLVNIKDQQDKEVRNNYDHLS----- 125 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 SPLD RF F F+ G N +A AA+ +AE + + NPLF++ Sbjct: 126 -----------SPLDPRFTFDNFVVGKPNELAFAAARRVAESNEPISGS---NPLFLYGG 171 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AIA IK ++ YL+AE FM+++ +A+R + K+ R++D+L+ Sbjct: 172 VGLGKTHLMHAIAWYIIKSSSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILM 231 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ Sbjct: 232 VDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVAD 291 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + +E+R IL+ + E +NI +VL +A+ + ++ REL+GA N++V S Sbjct: 292 INETTFELRLGILQ-----LKVEKMGINIPNKVLEFLAKNIKSNIRELEGALNKVVAHSS 346 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T + A ++LS L+ K + +E IQR VA+ +NI D+ S RR+RT+ RPR Sbjct: 347 LVGCSITLDSASDILSDLLRANH-KSVTLECIQRKVAEFFNIKITDMYSTRRLRTLARPR 405 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 QVAMYLSK +T +S PEIG+ FG RDH TV+HAV+++EK+++TD L+ ++ LL R++ Sbjct: 406 QVAMYLSKKLTQKSLPEIGKSFGGRDHATVIHAVKQIEKLIDTDSKLRDDINLLTRML 463 >gi|255659821|ref|ZP_05405230.1| ATPase [Mitsuokella multacida DSM 20544] gi|260847896|gb|EEX67903.1| ATPase [Mitsuokella multacida DSM 20544] Length = 490 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 155/498 (31%), Positives = 254/498 (51%), Gaps = 38/498 (7%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + ++++ + +++K + + WF+ +K S+ + LS + +K WI + YL Sbjct: 3 QTQLQAVWEQILTKMKETLAESAFK-WFKSVKPISLTATGLVLSAQNDLVKDWITSHYLT 61 Query: 92 TITKLFQEEHSRIQGVEILV--------------------RSVALPSVEKTASSPSITKL 131 I + V+ LV + ++ A S K Sbjct: 62 IIEDAVGAVLGSKRKVDFLVLPSVQPEPEPEPAKPEKDADSTQDTKEAKEAAGHSSRKKE 121 Query: 132 SPIN----TNISKSPIILGK-QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 P +P+ G ++P S L+ ++ F TF+ GSSNR A AA ++AE Sbjct: 122 DPNQGTLFQEQPPAPVDNGDMHIVAPGDRSSLNPKYTFETFVTGSSNRFAHAAAMAVAES 181 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NP F++ VGLGKTHL+ AI N ++ P +RV+Y+++E F AI+ Sbjct: 182 PGKVY-----NPFFMYGGVGLGKTHLMHAIGNRVLQNHPEMRVLYVSSEQFTNEIIRAIQ 236 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + A + R ID+L++DD+QFL GK Q EF + N+L + KQ++ ++DRPP E+ Sbjct: 237 EGKAELFRQKYRTIDVLMVDDIQFLSGKQSTQEEFFNTFNALHVADKQIILSSDRPPREV 296 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 + L+ R+RSR +GG+ + D E R +ILKN + +++ +VLM +A + Sbjct: 297 QKLEDRLRSRFEGGLITDIQAPDLETRIAILKN-----KALLDHVDVPNDVLMFIANRID 351 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA ++V S +T ++ E L + K++ +E IQ +VA ++ I Sbjct: 352 SNIRELEGALTRVVAYASLINKPVTTDVVAEALKDVFPNSHKKEVTLEVIQEIVATYFKI 411 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 DL S +R R++ PRQ+AMYL + +T S P+IG FG RDHTTVLHA K+ K E Sbjct: 412 RIEDLHSKKRTRSIAFPRQIAMYLCRELTDTSLPQIGNFFGGRDHTTVLHAYDKIAKERE 471 Query: 485 TDITLKKEVELLKRLISE 502 + L K ++ L I + Sbjct: 472 ENAKLHKIIKDLIESIQK 489 >gi|145640667|ref|ZP_01796250.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] gi|145274593|gb|EDK14456.1| chromosomal replication initiation protein [Haemophilus influenzae 22.4-21] Length = 454 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 154/471 (32%), Positives = 254/471 (53%), Gaps = 20/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ +L++QV ++W + L+ V N + L F+K W++ YL Sbjct: 1 MTLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVADNHIVLYASNMFVKGWVEIHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P+ + S+P+ + S + K Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKPAPKIVESTPNTSLRSESAVDFQAESSASVK----- 114 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTHL Sbjct: 115 -FESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTHL 169 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFFA 229 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 EKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLET 289 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + E+ LN+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 RVAIL-----LKKAEEHNLNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDIDI 344 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+K Sbjct: 345 DFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALAK 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T RS PEIGR F DRDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 ELTNRSLPEIGRAF-DRDHTTVLNACREVPKFREQDNSIQEDWANLIRTLS 453 >gi|325577775|ref|ZP_08148050.1| ribosomal subunit interface protein [Haemophilus parainfluenzae ATCC 33392] gi|325160520|gb|EGC72646.1| ribosomal subunit interface protein [Haemophilus parainfluenzae ATCC 33392] Length = 455 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 153/472 (32%), Positives = 260/472 (55%), Gaps = 21/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +++ S+L++QV P ++W + L+ + + V L F+K+W++N YL Sbjct: 1 MSLSTLWQDCLSQLQDQVSPMDLSTWLRPLQADVISQDQVVLYASNMFVKSWVENHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ ++I+V+ P+ + ++ S N +S + +++ P Sbjct: 61 IHQ-ICQALAKNPNLQIIVKEGVKPAPK------AVEPASTQTNNHQESAVNFQQESDVP 113 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 F S L+ + +F F+EG SN++A Q +A NP F++ GLGKTH Sbjct: 114 TKFESHLNHKHLFENFVEGKSNQLARAVGQKLALAPGEP----TANPFFLYGGTGLGKTH 169 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 170 LLHAIGNGILANKPNARVLYIHANNFMQHMVKAMRDNKMDQFKKFYRSLDALLVDDIQFF 229 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ N+L ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 230 AEKEKTQEEFFHIFNNLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 289 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ + + EEV +A+ + T+ REL+GA N++ F + Sbjct: 290 TRVAIL-----LKKAEEHHMELPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGHID 344 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ + + IE+IQ++VA++Y I DL S R R+V RPRQVAM L+ Sbjct: 345 IDFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVADLKSKSRARSVTRPRQVAMALA 403 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S PEIGR F +RDHTTVL+A R+V K E D +++++ L R +S Sbjct: 404 KELTNKSLPEIGRAF-ERDHTTVLNACREVPKFREKDSSIQEDWANLIRTLS 454 >gi|153007348|ref|YP_001368563.1| chromosomal replication initiation protein [Ochrobactrum anthropi ATCC 49188] gi|151559236|gb|ABS12734.1| chromosomal replication initiator protein DnaA [Ochrobactrum anthropi ATCC 49188] Length = 520 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 284/481 (59%), Positives = 365/481 (75%), Gaps = 17/481 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + +F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T+ Sbjct: 40 DEVFERLTAKLKARVGTEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLTE 99 Query: 96 LFQEEHSRIQGVEILVRSVALPSVE------------KTASSPSITKLSPINTNISKS-- 141 L+QEE+ +I VE++VR V+ K A +P + P+ ++ + Sbjct: 100 LWQEENPQILKVEVVVRGVSRVVRSAAPVEACEAVETKPAVAPREKMVFPVGQSLGEKRG 159 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 ++ + V GSPLD R+ F +F++G+SNRVAL AA++IAE G + VR NPLFI Sbjct: 160 SAVVAESASGSVLGSPLDPRYTFDSFVDGASNRVALAAARTIAEA---GSSAVRFNPLFI 216 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 HASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL+ K+ LR+ID Sbjct: 217 HASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNALSFKEQLRDID 276 Query: 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R+RSRLQGGV+ Sbjct: 277 LLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVRSRLQGGVA 336 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + DY+MR +L+ RLA++Q ED LNI EE+L HVARTVT SGREL+GAFNQL+FR Sbjct: 337 LEVAAPDYDMRVEMLRRRLAVAQAEDSSLNIGEEILSHVARTVTGSGRELEGAFNQLLFR 396 Query: 382 HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLSNRR RT+V+P Sbjct: 397 QSFEPNISIDRVDELLGHLTRVGEPKRIRIEEIQRIVARHYNVSKQDLLSNRRTRTIVKP 456 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L +E+ELLKRLI+ Sbjct: 457 RQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQELELLKRLIN 516 Query: 502 E 502 + Sbjct: 517 D 517 >gi|69246706|ref|ZP_00604074.1| chromosomal replication initiator protein, DnaA [Enterococcus faecium DO] gi|257878646|ref|ZP_05658299.1| chromosomal replication initiator protein [Enterococcus faecium 1,230,933] gi|257881312|ref|ZP_05660965.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,502] gi|257885587|ref|ZP_05665240.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,501] gi|257890529|ref|ZP_05670182.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,410] gi|257893104|ref|ZP_05672757.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,408] gi|258615270|ref|ZP_05713040.1| chromosomal replication initiation protein [Enterococcus faecium DO] gi|260558227|ref|ZP_05830423.1| chromosomal replication initiator protein [Enterococcus faecium C68] gi|261206917|ref|ZP_05921606.1| chromosomal replication initiator protein [Enterococcus faecium TC 6] gi|289566506|ref|ZP_06446930.1| chromosomal replication initiator protein DnaA [Enterococcus faecium D344SRF] gi|293553547|ref|ZP_06674174.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1039] gi|293563251|ref|ZP_06677703.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1162] gi|293569159|ref|ZP_06680465.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1071] gi|294616659|ref|ZP_06696430.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1636] gi|294623759|ref|ZP_06702587.1| chromosomal replication initiator protein DnaA [Enterococcus faecium U0317] gi|314940131|ref|ZP_07847311.1| replication initiator protein DnaA [Enterococcus faecium TX0133a04] gi|314943038|ref|ZP_07849842.1| replication initiator protein DnaA [Enterococcus faecium TX0133C] gi|314948156|ref|ZP_07851552.1| replication initiator protein DnaA [Enterococcus faecium TX0082] gi|314953430|ref|ZP_07856348.1| replication initiator protein DnaA [Enterococcus faecium TX0133A] gi|314993831|ref|ZP_07859167.1| replication initiator protein DnaA [Enterococcus faecium TX0133B] gi|314998144|ref|ZP_07863026.1| replication initiator protein DnaA [Enterococcus faecium TX0133a01] gi|68195120|gb|EAN09579.1| chromosomal replication initiator protein, DnaA [Enterococcus faecium DO] gi|257812874|gb|EEV41632.1| chromosomal replication initiator protein [Enterococcus faecium 1,230,933] gi|257816970|gb|EEV44298.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,502] gi|257821443|gb|EEV48573.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,501] gi|257826889|gb|EEV53515.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,410] gi|257829483|gb|EEV56090.1| chromosomal replication initiator protein [Enterococcus faecium 1,231,408] gi|260075401|gb|EEW63707.1| chromosomal replication initiator protein [Enterococcus faecium C68] gi|260078545|gb|EEW66247.1| chromosomal replication initiator protein [Enterococcus faecium TC 6] gi|289161715|gb|EFD09591.1| chromosomal replication initiator protein DnaA [Enterococcus faecium D344SRF] gi|291588128|gb|EFF19970.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1071] gi|291590479|gb|EFF22217.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1636] gi|291596713|gb|EFF27936.1| chromosomal replication initiator protein DnaA [Enterococcus faecium U0317] gi|291602302|gb|EFF32527.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1039] gi|291604790|gb|EFF34272.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1162] gi|313587856|gb|EFR66701.1| replication initiator protein DnaA [Enterococcus faecium TX0133a01] gi|313591722|gb|EFR70567.1| replication initiator protein DnaA [Enterococcus faecium TX0133B] gi|313594533|gb|EFR73378.1| replication initiator protein DnaA [Enterococcus faecium TX0133A] gi|313598238|gb|EFR77083.1| replication initiator protein DnaA [Enterococcus faecium TX0133C] gi|313640636|gb|EFS05216.1| replication initiator protein DnaA [Enterococcus faecium TX0133a04] gi|313645410|gb|EFS09990.1| replication initiator protein DnaA [Enterococcus faecium TX0082] Length = 444 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 136/470 (28%), Positives = 242/470 (51%), Gaps = 31/470 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ ++++ + + + + P Y +W + ++ N + + VP+ K + + Sbjct: 2 VSLDALWNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATK 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ + A +P + SP+ + Sbjct: 62 IVEVGYMLSGNEIIPRFITGEEAEQEEVIEEKNPKVVAPSPLKKAM-------------- 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL Sbjct: 108 -----LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + ++ QPN +V Y+++E F F ++I++ A + RN+DLLL+DD+QF Sbjct: 158 MHAIGHQMLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFA 217 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L + KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 218 EKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLET 277 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + A + E I ++ L ++A + ++ REL+GA ++ + ++ Sbjct: 278 RTAILRKKAAAERLE-----IPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDIST 332 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + L L + ++ I IQ VAK+Y+I DL +RV+++V PRQ+AMYL++ Sbjct: 333 SLAADALKTLKSGKGHPQLSILQIQEEVAKYYHIQLKDLKGKKRVKSIVVPRQIAMYLAR 392 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTV+HA K+++++++ ++++ EV +K + Sbjct: 393 ELTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFL 442 >gi|51891139|ref|YP_073830.1| chromosomal replication initiation protein [Symbiobacterium thermophilum IAM 14863] gi|61212552|sp|Q67TK7|DNAA_SYMTH RecName: Full=Chromosomal replication initiator protein DnaA gi|51854828|dbj|BAD38986.1| chromosomal replication initiation protein [Symbiobacterium thermophilum IAM 14863] Length = 458 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 138/472 (29%), Positives = 239/472 (50%), Gaps = 19/472 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ ++ L+ +W + + +V+ + + + V F K +++RY Sbjct: 1 MKTELSEVWQQCIDHLERHTSKTAIENWVRSTRPVAVVEDTIIVGVQGEFAKHRMESRYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + ++ R ++ + + P T+ + Sbjct: 61 PLLRQALRDLTKRNMQLKFVANPNVIEDPAAEPVDAPNVADLPAGTSAPAA-------EQ 113 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + ++ ++ F TF+ G+SNR A AA ++AE + Y NPLFI+ VGLGKT Sbjct: 114 NARLLGYINPKYTFETFVVGNSNRFAHAAALAVAETPARTY-----NPLFIYGGVGLGKT 168 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + ++ P +V Y++ E F F AI+ ++ R +D+LLIDD+QF Sbjct: 169 HLMHAIGHYVLQHNPTAKVAYVSTETFTNEFIMAIQKGSTTAFQNRYRKVDVLLIDDIQF 228 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N++ ++ KQ+V ++DRPP E+ +L+ R+RSR + G+ + D Sbjct: 229 LAGKEATQEEFYHTFNAIREANKQIVISSDRPPKEIPTLEDRLRSRFEWGLICDIQPPDL 288 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL+ + + + + +EV ++A + T+ REL+GA ++V + L Sbjct: 289 ETRTAILRK-----KAQSEGIQVPDEVTNYIATNIETNIRELEGALTRVVAYANMLKCPL 343 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A + L ++ K++ I I+++VA+HYNI D R R V PRQ+AMYL Sbjct: 344 TYDLAVQALKDILPPVRPKQITIATIKQVVAEHYNIRMQDFEVRNRSRAVAYPRQIAMYL 403 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ +T S P+IG FG RDHTTV+HA K+ K +++D +E L I Sbjct: 404 ARELTDSSLPKIGEEFGGRDHTTVIHACEKIAKDIQSDPAFAHTIEQLIARI 455 >gi|269791620|ref|YP_003316524.1| chromosomal replication initiator protein DnaA [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099255|gb|ACZ18242.1| chromosomal replication initiator protein DnaA [Thermanaerovibrio acidaminovorans DSM 6589] Length = 447 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 249/469 (53%), Gaps = 34/469 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + ++ + + ++ + P +W + + ++ L VP F+K I++R+L + Sbjct: 11 DLKVLWNEILDKGRDVLPPGAAGTWLKTCLPLEISGGMLVLDVPNVFIKEQIQSRFLLPL 70 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +L + + VE+ V S P+ +K A + ++ S Sbjct: 71 KELVR-ALGVAEDVELKVGSEIRPNEQKRAEAAAMPLQS--------------------- 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ +VF F+ G SNR+A A+ + AE Y NPLFI VGLGKTHL+ Sbjct: 109 QRGGLNPNYVFDNFVVGKSNRLAHAASLAAAESPGVAY-----NPLFIWGGVGLGKTHLM 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + QP +VVY+++E F SAI++N + K R++D+LLIDD+QFL Sbjct: 164 HAIGHYVCDNQPGAKVVYVSSEKFTNELISAIQNNRTQDFKAKYRSVDVLLIDDIQFLAD 223 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H NSL D+ KQVV ++DRPP +++ ++ R+ SR + G+ + D E R Sbjct: 224 KESTQEEFFHTFNSLHDAKKQVVISSDRPPKDIQRVEERLVSRFEWGLVTDIQPPDLETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + E + E+V+ +A+ + ++ REL+GA N++V +++ E Sbjct: 284 VAILQK-----KAEMRGYEVPEDVIFFLAQNIPSNIRELEGALNRVVACSELNGEVISVE 338 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E L ++ + I+ IQ +VA+ + + +DLLS +R + RQVAMYL + Sbjct: 339 NAAEWLKDIIRNVMRGPVSIDLIQHLVAESFGMPVDDLLSTKRTSDLALARQVAMYLCRE 398 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S +IG F +DHTTVLHA RK++++L+TD+ +K V+ +++ + Sbjct: 399 HTEASLQQIGYAFNKKDHTTVLHACRKIDELLKTDLRVKSVVDNVRKKL 447 >gi|307825356|ref|ZP_07655575.1| chromosomal replication initiator protein DnaA [Methylobacter tundripaludum SV96] gi|307733531|gb|EFO04389.1| chromosomal replication initiator protein DnaA [Methylobacter tundripaludum SV96] Length = 438 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 145/470 (30%), Positives = 243/470 (51%), Gaps = 38/470 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 SI+ S+L+N++ +++W + L+ I L P F+ W+K + I + Sbjct: 2 SSIWNNCLSKLENEISGSDFSTWIRPLQAIESDEQIK-LLAPNRFVLDWVKEHHFAKIEE 60 Query: 96 LFQEEHSRIQGV--EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E + + EI R+ ++ + K A K SP Sbjct: 61 TIYEFSNGTLNLSLEIGSRNSSVATAAKVAKPAGSQKSSP-------------------- 100 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ F F F+EG SN++A A+ ++E Y NPL I+ S GLGKTH++ Sbjct: 101 --NFLNKAFTFDNFVEGKSNQLARAASMQVSENIGKAY-----NPLLIYGSSGLGKTHMM 153 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI NA +++ P+ VVYL +E F+ A++ N K+ R +D+LLIDD+QF G Sbjct: 154 HAIGNAVLQKNPSATVVYLHSEKFVQDMVKALQQNSINAFKEFYRGVDVLLIDDIQFFAG 213 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ QV+ D+ P E+ L+ R++SR G+ V + D E R Sbjct: 214 KERSQEEFFHTFNTLLEKKHQVILTCDKYPKEIIGLEDRLKSRFGWGLPVLIEPPDMETR 273 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + + + ++V +A+ + ++ R+L+GA +++ F +T E Sbjct: 274 AAIL-----MKKAALVNIELAQDVAFFIAKRIPSNVRDLEGALRRVIANAQFTGREITIE 328 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L++ K + I++IQ+ VA+++ I DL S R +++ RPRQ+AM L++ Sbjct: 329 FTKEALHDLISLQ-DKLVNIDNIQKTVAEYFKIRVADLSSKNRKQSITRPRQMAMCLARE 387 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T SFPEIG FG RDHTTV++A +++ ++ E D + ++ L R +S Sbjct: 388 LTSHSFPEIGDAFGGRDHTTVMNACKRIAELKEADNKIAEDYSNLLRTLS 437 >gi|255033818|ref|YP_003084439.1| chromosomal replication initiator protein DnaA [Dyadobacter fermentans DSM 18053] gi|254946574|gb|ACT91274.1| chromosomal replication initiator protein DnaA [Dyadobacter fermentans DSM 18053] Length = 480 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 135/484 (27%), Positives = 247/484 (51%), Gaps = 19/484 (3%) Query: 23 NVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK 82 N +++ + ++ ++ + + +WF+ ++ + ++ + VP+ F Sbjct: 3 NYTLERISTNREVDQVWDACLRIIQQHIPEQSFKTWFEPIRPLKLYGKVLTVQVPSQFFY 62 Query: 83 AWIKNRYLETITKLFQEEHSRIQGVEILV-------RSVALPSVEKTASSPSITKLSPIN 135 W+++ Y+ + K R +E + + L T SP+ +K + Sbjct: 63 EWLEDNYVNLLRKALDYAIGRDGLLEYSIIVDTGNEKHQPLTMNVSTQKSPNYSKPDNFS 122 Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 T+ + K S + L+ + F FIEG NR+A +A ++A+ Sbjct: 123 TDPRMGATVREKDQDSLTLDTYLNPNYSFDNFIEGDCNRLARSAGFAVAQRPG----LTS 178 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPL ++ VGLGKTHL+QAI N N V+Y+++E F +F ++IR+N D Sbjct: 179 FNPLMMYGGVGLGKTHLVQAIGNYITNHYENKLVLYVSSEKFTNQFINSIRNNTLQEFTD 238 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 +D+L IDD+QFL GK Q F H+ N L KQ++ +DRPP EL+ L R+ S Sbjct: 239 FYMKVDVLAIDDVQFLSGKEKTQDTFFHIFNHLHQLGKQIIMTSDRPPRELQGLQDRLLS 298 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R + G++ L D+E R +I++ + + ++I+ +V+ ++A +V ++ REL+G Sbjct: 299 RFKWGLTADLQAPDFETRIAIIQK-----KIQSEGISIDYDVIEYIAHSVNSNVRELEGV 353 Query: 375 FNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 L+ + S + E+A L ++V E K++ I+ IQ ++A ++ +S DL S Sbjct: 354 IVSLMAQASLTRRNIDVELAKNTLRNIV-MNEDKEVTIDTIQEIIADYFQVSIADLKSKS 412 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R + VV PRQ+AMYL+K T IG FG RDH+TV+H+++ + +++ +++ + Sbjct: 413 RKKEVVYPRQLAMYLAKEYTDLPLKSIGYHFGGRDHSTVIHSIQSINLLMDETPDVEETL 472 Query: 494 ELLK 497 + L+ Sbjct: 473 QKLR 476 >gi|294619745|ref|ZP_06699150.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1679] gi|291594015|gb|EFF25484.1| chromosomal replication initiator protein DnaA [Enterococcus faecium E1679] Length = 444 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 135/470 (28%), Positives = 242/470 (51%), Gaps = 31/470 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ ++++ + + + + P Y +W + ++ N + + VP+ K + + Sbjct: 2 VSLDALWNELKATYQKDLSPASYNTWIETANPRTLDQNQLVVEVPSKIHKEYWEKNLATK 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ + A +P + SP+ + Sbjct: 62 IVEVGYMLSGNEIIPRFITGEEAEQEEVIEEKNPKVVAPSPLKKAM-------------- 107 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL Sbjct: 108 -----LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + ++ QPN +V Y+++E F F ++I++ A + RN+DLLL+DD+QF Sbjct: 158 MHAIGHQMLQSQPNAKVKYVSSETFANDFINSIQNKTAEEFRQEYRNVDLLLVDDIQFFA 217 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N+L + KQ+V +DR P+E+ L R+ SR G+SV + D E Sbjct: 218 EKEATQEEFFHTFNALYNEGKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLET 277 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + A + E I ++ L ++A + ++ REL+GA ++ + ++ Sbjct: 278 RTAILRKKAAAERLE-----IPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMNSEDIST 332 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + L L + ++ I IQ VAK+Y+I D+ +RV+++V PRQ+AMYL++ Sbjct: 333 SLAADALKTLKSGKGHPQLSILQIQEEVAKYYHIQLKDIKGKKRVKSIVVPRQIAMYLAR 392 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTV+HA K+++++++ ++++ EV +K + Sbjct: 393 ELTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLMDSSVSMQNEVSEIKNFL 442 >gi|81251045|gb|ABB69855.1| DNA replication initiator protein [Nitrosospira sp. 9SS1] Length = 476 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 138/485 (28%), Positives = 240/485 (49%), Gaps = 33/485 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV---HLSVPTNFLKAWIKNRYLE 91 ++ + +N++ + +W + L+ + L P F+ W+K+ +L Sbjct: 4 PDTFWLACLEYFENELSAQQFNTWIKPLRLQLSDDSPEPALTLIAPNRFVLQWVKDNFLS 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTAS--------------SPSITKLSPINTN 137 IT++ + +R +++ + S + + + Sbjct: 64 GITQMAENHFARPVQLQLELAGQVPASASPSTGGNNGMNSHSITAVFDAPTESAQKVPKD 123 Query: 138 ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + KQ +P + L+ F F+TF+ G +N++A A +AE Y N Sbjct: 124 TKDTKDTKEKQEKNP---TRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----N 175 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 P FI+ VGLGKTHL+QAI N ++ P +V Y+ +E ++ A + K Sbjct: 176 PFFIYGGVGLGKTHLIQAIGNFVVEHNPAAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYY 235 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 ++DLLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR Sbjct: 236 HSLDLLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRF 295 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G++V + + EMR +IL + + + ++E V +A+ + ++ REL+GA Sbjct: 296 GWGLTVAVEPPELEMRVAIL-----LKKALMEDIILDESVAFFIAKHIRSNVRELEGALK 350 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 ++V F LT ++A E L L+ +++ IE+IQ+ VA +Y I ++ S +R Sbjct: 351 RVVAYSRFTGHALTLDLAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRS 409 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R V RPRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ Sbjct: 410 RVVARPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNT 469 Query: 496 LKRLI 500 L ++ Sbjct: 470 LLHIL 474 >gi|81251061|gb|ABB69867.1| DNA replication initiator protein [Nitrosospira sp. TCH716] Length = 476 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 139/482 (28%), Positives = 243/482 (50%), Gaps = 27/482 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN---IVHLSVPTNFLKAWIKNRYLE 91 ++ + +N++ + +W + L+ + ++ L P F+ W+K+ +L Sbjct: 4 PDTFWLACLEYFENELSAQQFNTWIKPLRLQLSDDSPEPVLTLIAPNRFVLQWVKDNFLS 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKT-------ASSPSITKLSPINTNISKSPI- 143 IT++ + +R + + + PS + S P + K+P Sbjct: 64 GITQMAENHFARPVQLRLELAGQVAPSPSPSIGGNNGMDSRPVTAVFDAPTGSPQKAPKD 123 Query: 144 ---ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + + + L+ F F+TF+ G +N++A A +AE Y NP F Sbjct: 124 TKDVKDTKEKQEKNPTRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFF 178 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHL+QAI N ++ P+ +V Y+ +E ++ A + K ++ Sbjct: 179 IYGGVGLGKTHLIQAIGNFVVEHNPSAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYYHSL 238 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G Sbjct: 239 DLLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWG 298 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + EMR +IL + + + ++E V +A+ + ++ REL+GA ++V Sbjct: 299 LTVAVEPPELEMRVAIL-----LKKALMEDIILDESVAFFIAKHIRSNVRELEGALKRVV 353 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 F L+ E+A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V Sbjct: 354 AYSRFTGHALSLELAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRSRVV 412 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM +SK +TP S P+IG G RDHTTVLH RK+ ++ +D + ++ L Sbjct: 413 ARPRQMAMAISKELTPLSLPDIGEASGGRDHTTVLHGYRKIAELRASDPAVNRDFNTLLH 472 Query: 499 LI 500 ++ Sbjct: 473 IL 474 >gi|219846957|ref|YP_002461390.1| chromosomal replication initiation protein [Chloroflexus aggregans DSM 9485] gi|254777892|sp|B8GBK7|DNAA_CHLAD RecName: Full=Chromosomal replication initiator protein DnaA gi|219541216|gb|ACL22954.1| chromosomal replication initiator protein DnaA [Chloroflexus aggregans DSM 9485] Length = 478 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 151/491 (30%), Positives = 247/491 (50%), Gaps = 40/491 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N I+ S L++Q Y + + S+ + I + V + K ++NR L Sbjct: 1 MNLTHIWKTTLSALQSQTSRHDYEALLRPAMLLSLDNGIARIGVSSPIQKEGLENRLLMP 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + V++L+ + AL P +T T+++ P + +P Sbjct: 61 LRNALTRVVGYPVQVQVLIANQAL--------RPEVTAAPRNGTHVALEPEPFVTEPPTP 112 Query: 153 VFGSP--------------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 F S L+ R+ F++FI GSSNR+A A ++A+ Y Sbjct: 113 AFTSGNGNGERAVQLDLASAMRSGMLNPRYTFASFIVGSSNRLAHAACLAVADNPGQAY- 171 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPLF++ VGLGKTHLL AI N + R P + V+Y+++E F +AIR Sbjct: 172 ----NPLFLYGGVGLGKTHLLHAIGNRVLDRDPEINVLYVSSEKFTNDLINAIRRQQTEE 227 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + RNID+LLIDD+QF+ GK Q EF H N+L +AK +V ++DRPP + +L+ R Sbjct: 228 FRMRYRNIDVLLIDDIQFIAGKDATQEEFFHTFNTLHSAAKHIVISSDRPPKAILTLEER 287 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSR + G+ V + D E R +IL+ ++ E +++ +EV+ +A + ++ REL Sbjct: 288 LRSRFEWGLIVDVQPPDLETRTAILR-----AKAEQMSVHVPDEVIDFLAHKIQSNIREL 342 Query: 372 DGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +G+ N++ + +T + A L+ L+ +++ E I ++V++HY I L Sbjct: 343 EGSLNRVAAYAELNRLPITIDTATAALADLLGNQRRRRISAEAILQIVSEHYGIEVEQLR 402 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 + R R VV PRQVAMYL + T S +IG G RDHTTV++ K+ + + TD L+ Sbjct: 403 ARNRSRHVVVPRQVAMYLLREETESSLVDIGNLLGGRDHTTVMYGCEKIAEEINTDSHLR 462 Query: 491 KEVELLKRLIS 501 EV ++ I Sbjct: 463 SEVMAIRERIQ 473 >gi|194332854|ref|YP_002014714.1| chromosomal replication initiation protein [Prosthecochloris aestuarii DSM 271] gi|194310672|gb|ACF45067.1| chromosomal replication initiator protein DnaA [Prosthecochloris aestuarii DSM 271] Length = 492 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 135/474 (28%), Positives = 237/474 (50%), Gaps = 18/474 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ +K ++ + +WF + + N + + VP+ F WI+ Y + Sbjct: 24 AQKVWDACLEIIKEKINNQAFKTWFTPITPLNFSDNELTIEVPSQFFYEWIEENYSRYVK 83 Query: 95 KLFQE---EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + +E ++ ++ +S P + P + I P ++ Sbjct: 84 EALKEIIGAEGKLMYSIVMDKSQGHPVTIELPHQNIAKSAEPPASTIPSPPQSADRERFE 143 Query: 152 PV---FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 F S L+ ++ FS+ I G N +A A++S+A+ NPL I+ VGLG Sbjct: 144 KNRIKFESHLNPKYTFSSLIRGDCNSLAFAASKSVAQNPGQN----AFNPLVIYGGVGLG 199 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTH++QAI N + + V+Y+++E F F +AI++ R ID+L+IDD+ Sbjct: 200 KTHMMQAIGNQVRENCISEYVLYVSSEKFAIDFVNAIQNGNIQEFSSFYRKIDVLIIDDI 259 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF GK Q E H+ N+L S KQ++ ++DRP E++ ++ R+ SR G+SV L Sbjct: 260 QFFAGKEKTQEEIFHIFNTLHQSNKQIILSSDRPIKEIKGIEDRLISRFNWGLSVDLQPP 319 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 DYE R +I++ S+ E +N++ ++ +A VT + REL+G +L+ HS F Sbjct: 320 DYETRKAIIQ-----SKLEQNGVNLDSTIVDFIATNVTQNVRELEGCIVKLLAAHSLFNQ 374 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + L ++ +K++ +E I++ V +++I+ NDL + + + RQ+AM Sbjct: 375 EIDLAFTKSTLKDIIRIQ-SKQLTLETIEKAVCSYFSITPNDLKGKSKKKEIATGRQIAM 433 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YLSK +T S IG FG RDH+TV+H V K +E + ++ +E LK+ I Sbjct: 434 YLSKELTDSSLKTIGLHFGGRDHSTVIHGCNTVSKKMEQSMEIRNTIEELKKRI 487 >gi|225626552|ref|ZP_03784591.1| chromosomal replication initiator protein DnaA [Brucella ceti str. Cudo] gi|225618209|gb|EEH15252.1| chromosomal replication initiator protein DnaA [Brucella ceti str. Cudo] Length = 566 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 287/500 (57%), Positives = 367/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 67 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 126 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 127 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 186 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SN VAL AA++ Sbjct: 187 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAAART 246 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 247 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 303 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 304 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 363 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 364 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 423 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 424 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 483 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 484 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 543 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 544 VGADTKLAQELELLKRLIND 563 >gi|17229501|ref|NP_486049.1| chromosomal replication initiation protein [Nostoc sp. PCC 7120] gi|38257719|sp|Q8YVG9|DNAA_NOSS1 RecName: Full=Chromosomal replication initiator protein DnaA gi|17131099|dbj|BAB73708.1| chromosomal replication initiator protein [Nostoc sp. PCC 7120] Length = 459 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 247/474 (52%), Gaps = 25/474 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E+ +++++ V RL+ ++ + +W + + +N + + P F + W++ Y Sbjct: 1 MMEMPIDNLWSQVLERLQIELSRPTFETWIKTANAERLENNCLVIITPNPFARNWLQKYY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + TI + Q I G + + E P I+++P + Sbjct: 61 ISTIANVVQ----SILGHPVEIYITVAKGEEFEEIGGGGEWELPTTNIINETPNQNRQP- 115 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L++++VFS F+ G++NR+A A+ ++AE NPLF+ VGLGK Sbjct: 116 -----NTELNAKYVFSRFVVGANNRMAHAASLAVAESPGR-----EFNPLFLCGGVGLGK 165 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + + PN ++ Y++ E F +AIR++ + ++ R D+LL+DD+Q Sbjct: 166 THLMQAIGHYRWEICPNSKIFYVSTEQFTNDLITAIRNDSMQSFREHYRAADVLLVDDIQ 225 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ KQVV A+DRPP+++ SL R+ SR G+ + D Sbjct: 226 FIEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQAPD 285 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL+ + E K+ + +V+ ++A T++ REL+GA + + + I Sbjct: 286 LETRMAILQK-----KSEYEKIRLPRDVIEYIATNFTSNIRELEGALTRALA---YISIW 337 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + L+ ++ T K + E I ++A +++IS DL SN R R + RQ+ MY Sbjct: 338 GLPMTVANLAPVLVTPMEKIEATPEAILTVIADNFDISIEDLKSNSRRREISWARQIGMY 397 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + T SFP IG FG +DHTTVL++ K+ +++E+D L + + L I Sbjct: 398 LMRQHTDLSFPRIGEEFGGKDHTTVLYSCDKIAQLVESDRGLSQTLRQLSDRIK 451 >gi|56416662|ref|YP_153736.1| chromosomal replication initiation protein [Anaplasma marginale str. St. Maries] gi|71151791|sp|Q5PB48|DNAA_ANAMM RecName: Full=Chromosomal replication initiator protein DnaA gi|56387894|gb|AAV86481.1| chromosomal replication initiator protein [Anaplasma marginale str. St. Maries] Length = 471 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 169/488 (34%), Positives = 272/488 (55%), Gaps = 21/488 (4%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL 74 V+++E T V KR + ++ + V +L++ G +Y SW L + + V L Sbjct: 2 VDVSETTERCVVHKRQGQDGGDAAWRGVQKKLRDFYGSAIYDSWLSALVYSGNENGRVVL 61 Query: 75 SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 VPT F+K WI YLE I K +Q+E + V+I V + +++ Sbjct: 62 LVPTRFIKEWILVHYLERILKYWQDESDAVYSVDICV----------SDGVGVQPQMAEH 111 Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 P ++ SPLD RF F F+ G N +A AA+ +AE + + Sbjct: 112 PDGAVDGPPVVMVGGTYDHLSSPLDPRFTFDNFVVGKPNELAFAAARRVAESSAPIPGS- 170 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLF++ VGLGKTHL+ AIA + ++ YL+AE FM+++ +A+R + K Sbjct: 171 --NPLFLYGGVGLGKTHLMHAIAWYILNSSVKRKIAYLSAEKFMYQYVTALRSKDIMLFK 228 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + R++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+ Sbjct: 229 EQFRSVDILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEDRIK 288 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRL G+ + +E+R IL+ + E +++ EVL +A+ + ++ REL+G Sbjct: 289 SRLGWGLVADINETTFELRLGILQ-----LKIEKMGVHVPNEVLEFLAKNIKSNIRELEG 343 Query: 374 AFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A N++V S +T E A +LS L+ + + + IQ+ VA+ + I D+ S Sbjct: 344 ALNKVVAHSSLVGRSVTIESASGILSDLLRANH-RMVTVGMIQKKVAEFFGIKLEDMYSA 402 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR+R + RPRQVAMYL+K +T +S P+IG+ FG RDH TV+HAV+++EK +E D L + Sbjct: 403 RRLRALARPRQVAMYLAKRLTQKSLPDIGKSFGGRDHATVIHAVKQIEKFMEDDAKLADD 462 Query: 493 VELLKRLI 500 + LL R++ Sbjct: 463 INLLIRML 470 >gi|156740029|ref|YP_001430158.1| chromosomal replication initiation protein [Roseiflexus castenholzii DSM 13941] gi|189044602|sp|A7NFB8|DNAA_ROSCS RecName: Full=Chromosomal replication initiator protein DnaA gi|156231357|gb|ABU56140.1| chromosomal replication initiator protein DnaA [Roseiflexus castenholzii DSM 13941] Length = 480 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 149/485 (30%), Positives = 244/485 (50%), Gaps = 27/485 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N ++ L+ Q+ Y +W + + + + + P F+K +++RYL T Sbjct: 1 MNLTKVWNTTLGSLQVQLPRHEYNTWVRGANLLDIDNGVAIIRAPNAFIKEGLESRYLTT 60 Query: 93 ITK---------------LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTN 137 + + L E RI G I R A + + +P ++ Sbjct: 61 LREQLGSVVGFPVDVRIVLATSESERIDGASINGRHAARDTRKSDHHAPLSGGYGNGISH 120 Query: 138 ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + + + V S L+ R+ F FI G SNR+A A ++AE + Y N Sbjct: 121 PLERASVHQLELHRAVRSSMLNPRYTFDRFIIGPSNRLANAACMAVAEHPAQAY-----N 175 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLF++ VGLGKTHLL AI N + R P + V+Y+++E F ++IR + Sbjct: 176 PLFLYGGVGLGKTHLLHAIGNFVLDRDPEVNVLYVSSETFTNDLINSIRRQQTEEFRIRY 235 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 RNID+LLIDD+QF+ GK Q EF H N+L + KQ++ ++DR P + +L+ R+RSR Sbjct: 236 RNIDILLIDDIQFIAGKEQTQEEFFHTFNTLHSAGKQIIISSDRSPKAILTLEERLRSRF 295 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+ V + + D E R +IL+ ++ E + + + V+ +A+ + + REL+G N Sbjct: 296 EWGLIVDVQMPDLETRTAILR-----AKAEQSPVPVPQPVIDFLAQRIQSHIRELEGCLN 350 Query: 377 QLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 ++ I +T E+A LS L++T K++ E I R VA Y++ L R Sbjct: 351 RVTAYAQMYNIPVTIEVATAALSELLDTNRRKRVTPEAILREVAAFYSVDLRSLQGRGRS 410 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R +V PR VAMYL + T S EIG+ G RDHTTV++ K+ + + TD L++EV Sbjct: 411 RNIVTPRHVAMYLLREETDSSLMEIGQLLGGRDHTTVMYGCDKIAEEINTDARLRQEVAA 470 Query: 496 LKRLI 500 ++ + Sbjct: 471 IRERL 475 >gi|222475026|ref|YP_002563441.1| chromosomal replication initiator protein (dnaA) [Anaplasma marginale str. Florida] gi|254994872|ref|ZP_05277062.1| chromosomal replication initiation protein [Anaplasma marginale str. Mississippi] gi|255003006|ref|ZP_05277970.1| chromosomal replication initiation protein [Anaplasma marginale str. Puerto Rico] gi|255004132|ref|ZP_05278933.1| chromosomal replication initiation protein [Anaplasma marginale str. Virginia] gi|222419162|gb|ACM49185.1| chromosomal replication initiator protein (dnaA) [Anaplasma marginale str. Florida] Length = 471 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 169/488 (34%), Positives = 272/488 (55%), Gaps = 21/488 (4%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL 74 V+++E T V KR + ++ + V +L++ G +Y SW L + + V L Sbjct: 2 VDVSETTERCVVHKRQGQDGGDAAWRGVQKKLRDFYGSAIYDSWLSALVYSGNENGRVVL 61 Query: 75 SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 VPT F+K WI YLE I K +Q+E + V+I V + +++ Sbjct: 62 LVPTRFIKEWILVHYLERILKYWQDESDAVYSVDICV----------SDGVGVQPQMAEH 111 Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 P ++ SPLD RF F F+ G N +A AA+ +AE + + Sbjct: 112 PDGAVDGPPVVMVGGTYDHLSSPLDPRFTFDNFVVGKPNELAFAAARRVAESSAPIPGS- 170 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLF++ VGLGKTHL+ AIA + ++ YL+AE FM+++ +A+R + K Sbjct: 171 --NPLFLYGGVGLGKTHLMHAIAWYILNSSVKRKIAYLSAEKFMYQYVTALRSKDIMLFK 228 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + R++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+ Sbjct: 229 EQFRSVDILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEDRIK 288 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRL G+ + +E+R IL+ + E +++ EVL +A+ + ++ REL+G Sbjct: 289 SRLGWGLVADINETTFELRLGILQ-----LKIEKMGVHVPNEVLEFLAKNIKSNIRELEG 343 Query: 374 AFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A N++V S +T E A +LS L+ + + + IQ+ VA+ + I D+ S Sbjct: 344 ALNKVVAHSSLVGSSVTIESASGILSDLLRANH-RMVTVGMIQKKVAEFFGIKLEDMYSA 402 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR+R + RPRQVAMYL+K +T +S P+IG+ FG RDH TV+HAV+++EK +E D L + Sbjct: 403 RRLRALARPRQVAMYLAKRLTQKSLPDIGKSFGGRDHATVIHAVKQIEKFMEDDAKLADD 462 Query: 493 VELLKRLI 500 + LL R++ Sbjct: 463 INLLIRML 470 >gi|73666899|ref|YP_302915.1| chromosomal replication initiation protein [Ehrlichia canis str. Jake] gi|72394040|gb|AAZ68317.1| chromosomal replication initiator protein DnaA [Ehrlichia canis str. Jake] Length = 452 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 174/476 (36%), Positives = 273/476 (57%), Gaps = 27/476 (5%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 K L+ + I+ + S+L G +Y SW L + + V LS PT F+K WI Sbjct: 1 MKEGLQSDNRVIWKDIQSKLHKFYGNAIYDSWLSVLVYVNNEGGKVLLSAPTRFIKEWIL 60 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 YL+ I K +Q+E + V+I V + ++ ++ ++S Sbjct: 61 VHYLDQILKYWQDEDKSVCSVDICVVNNQDTNLIVNVKDQQGNEIRNNYDHLS------- 113 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 SPLD RF F F+ G N +A AA+ +AE + + NPLF++ VG Sbjct: 114 ---------SPLDPRFTFDNFVVGKPNELAFAAARRVAESNDPISGS---NPLFLYGGVG 161 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AIA IK ++ YL+AE FM+++ +A+R + K+ R++D+L++D Sbjct: 162 LGKTHLMHAIAWYIIKSSSKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDILMVD 221 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + Sbjct: 222 DVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADIN 281 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 +E+R IL+ + E +NI +VL +A+ + ++ REL+GA N++V S Sbjct: 282 ETTFELRLGILQ-----LKVEKMGINIPNKVLEFLAKNIKSNIRELEGALNKVVAHSSLV 336 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T + A ++LS L+ K + +E IQ+ VA+ +NI D+ S RR+RT+ RPRQV Sbjct: 337 GCSITLDSASDILSDLLRANH-KSVTLECIQKKVAEFFNIKMTDMYSTRRLRTLARPRQV 395 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYLSK +T +S PEIG+ FG RDH TV+HAV+++EK++ETD L+ ++ LL R++ Sbjct: 396 AMYLSKKLTQKSLPEIGKSFGGRDHATVIHAVKQIEKLIETDDKLRDDINLLTRML 451 >gi|302336549|ref|YP_003801755.1| chromosomal replication initiator protein DnaA [Spirochaeta smaragdinae DSM 11293] gi|301633734|gb|ADK79161.1| chromosomal replication initiator protein DnaA [Spirochaeta smaragdinae DSM 11293] Length = 471 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 155/467 (33%), Positives = 248/467 (53%), Gaps = 13/467 (2%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + ++LKN++ + WF + +HS + LSVP+ F + +K RY I + Sbjct: 12 FWQEALNQLKNELSDQEFVMWFSNISYHSSEEGKLILSVPSAFYRDQVKQRYTGIIKEKL 71 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 E V+ +V A K + S T P+ + K P Sbjct: 72 YELSGFQLDVDFIVTKRATSESPKEKNEVSDTPQPPMAVKPVPVSVSPAK-NDPPKKHPD 130 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F F+ G +N +A A +I++ Y NP I+ VGLGKTHL+Q+I Sbjct: 131 LRPDYTFENFVIGENNTLAANACMAISKNPGTAY-----NPCLIYGGVGLGKTHLIQSIG 185 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N + P++++ Y+TAE F F AI N K+ R +D+LLIDD+ FLQ K Sbjct: 186 NYAWAHNPDIKIAYVTAETFTNEFIEAIHHNKNHQFKNKYRKVDILLIDDIHFLQEKTGT 245 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E H N+L ++ KQ+V DRP SEL+ L R+RSR + G++V L +E RF+IL Sbjct: 246 QEELFHTFNALYETNKQLVFTCDRPVSELKQLTDRLRSRFERGLNVDLQAPAFETRFAIL 305 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEIADE 395 K + E+ K+ I++EV+ + R VTT+ R+L+ A +L+ +T +IA + Sbjct: 306 KQ-----KVEEKKVPIDDEVIELICRNVTTNVRDLEAALTRLIAYADLLHKKVTLDIARQ 360 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + + + + +E IQR+ A+++N+S NDL +R + + PRQ+AMY+++ +T Sbjct: 361 QLKDVFSNPKMSNITVEMIQRVTAEYFNLSPNDLRGKKRTKAIAFPRQIAMYITREITEF 420 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S E+G FG RDHTTV+HA ++VE ++TD +L+ ++ + R I E Sbjct: 421 STTEVGLEFGGRDHTTVMHACQRVESRMQTDPSLEPIIQRIVRQIKE 467 >gi|120608715|ref|YP_968393.1| chromosomal replication initiation protein [Acidovorax citrulli AAC00-1] gi|120587179|gb|ABM30619.1| chromosomal replication initiator protein DnaA [Acidovorax citrulli AAC00-1] Length = 475 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 152/493 (30%), Positives = 248/493 (50%), Gaps = 26/493 (5%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVH 73 E ++P+ D D + ++ +L + + +W + L + V Sbjct: 2 TEEPSRSPDFDTDTDA--DPGQGLWQACVEQLAQDLPEQQFNTWIKPLVAQVAPDFSKVT 59 Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV---RSVALPSVEKTASSPSITK 130 L V F WI+ +Y IT L + + + +E+ + SV V P+ Sbjct: 60 LLVANRFKLDWIRAQYAGRITALLEGLYGQPVTLELALAQRESVTRTVVRPVVQQPAAPA 119 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 +PI + S P F S L+ F T +EG++NR+A +AA +A H Sbjct: 120 ETPIGSAPSDEPAAAP-------FRSRLNPALTFETLVEGTANRMARSAAMHVAGSPGHL 172 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ VGLGKTHL+ A+ N ++ +P+ +V+Y+ AE F+ A + Sbjct: 173 Y-----NPLFIYGGVGLGKTHLVHAVGNRLLQDKPDAKVLYIHAEQFVSDVVKAYQRRTF 227 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 K ++DLLLIDD+QF K Q EF + +LL +V +D P L ++ Sbjct: 228 DEFKAHYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIH 287 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR G++V + + EMR +IL N+ E + EEV VA+ V ++ R Sbjct: 288 ERLVSRFDSGLTVTIEPPELEMRVAILINKARAESAE-----MPEEVAFFVAKNVRSNVR 342 Query: 370 ELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA +++ F ++ ++A E L L++ +++ +E+IQ+ VA +Y I D Sbjct: 343 ELEGALRKILAYSRFNQKEVSIQLAREALRDLLSIQ-NRQISVENIQKTVADYYKIKVAD 401 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 402 MYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAGERQQLTE 461 Query: 489 LKKEVELLKRLIS 501 L +++ +L++ + Sbjct: 462 LNQQLHVLEQTLK 474 >gi|325980882|ref|YP_004293284.1| chromosomal replication initiator protein DnaA [Nitrosomonas sp. AL212] gi|325530401|gb|ADZ25122.1| chromosomal replication initiator protein DnaA [Nitrosomonas sp. AL212] Length = 474 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 138/483 (28%), Positives = 249/483 (51%), Gaps = 20/483 (4%) Query: 22 PNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLK--FHSVLHNIVHLSVPTN 79 PN ++ + + + + + ++ + +W + L+ N V L P Sbjct: 6 PNETNKEQKMMQSLSTFWLSCLDHFQKELNAQQFNTWIKPLEIDLAFNGDNKVVLIAPNR 65 Query: 80 FLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS 139 F+ W+ + ++ I + + + + + + + K +S +++ +P + + Sbjct: 66 FVSQWVADNFIMHIESMAKAYFDKNIQFHLKL---SDQTDTKNNTSNQMSESAPSSVEVK 122 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 P + + T + G L+ F F FI G +N++A A +AE Y NPL Sbjct: 123 PEPKTVYQPTKKNLNG--LNPNFTFDNFITGKANQLARAGAIQVAESPGVAY-----NPL 175 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI+ VGLGKTHL+QAI N + + ++ Y+ AE ++ SA + K + Sbjct: 176 FIYGGVGLGKTHLIQAIGNYVHENNKSAKIRYVHAEKYVSDVVSAYQHKAFDKFKLYYHS 235 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +DLLL+DD+QF GK Q EF + N+L+++ KQV+ D P E+ L+ R+ SR Sbjct: 236 LDLLLVDDVQFFGGKNRTQEEFFYAFNALIETHKQVIITCDTYPKEITGLEERLVSRFGW 295 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + + EMR +IL + + E K+ ++E V +A+ + ++ REL+GA ++ Sbjct: 296 GLTVAVEPPELEMRVAIL-----LKKAEMEKIRLDENVAFFIAKHIRSNVRELEGALKRV 350 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + F +T ++A E L L+ ++++ IE+IQ+ VA +Y I +++ S +R R Sbjct: 351 LAFSRFVNQDITLDLAKEALKDLLAVQ-SRQISIENIQKTVADYYKIKVSEMYSKKRSRI 409 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V RPRQ+AM ++K +T S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 410 VARPRQMAMAIAKELTSLSLPDIGEAFGGRDHTTVLHGYRKINELRISDPLVSRDFNALI 469 Query: 498 RLI 500 ++ Sbjct: 470 LIL 472 >gi|75906226|ref|YP_320522.1| chromosomal replication initiation protein [Anabaena variabilis ATCC 29413] gi|123745335|sp|Q3MHA9|DNAA_ANAVT RecName: Full=Chromosomal replication initiator protein DnaA gi|75699951|gb|ABA19627.1| chromosomal replication initiator protein, DnaA [Anabaena variabilis ATCC 29413] Length = 460 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 140/473 (29%), Positives = 247/473 (52%), Gaps = 25/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ +S+++ V RL+ ++ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MEISIDSLWSQVLERLQIELSRPTFETWIKTANAERLENNCLVIITPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI + Q I G + + E P +I ++P + Sbjct: 61 TTIANVVQ----SILGHPVEIYITVAKGEEFEEIGGGGAWELPTTNSIYETPNQNRQP-- 114 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L++++VFS F+ G++NR+A A+ ++AE NPLF+ VGLGKT Sbjct: 115 ----NTELNAKYVFSRFVVGANNRMAHAASLAVAESPGR-----EFNPLFLCGGVGLGKT 165 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + + P+ ++ Y++ E F +AIR++ + ++ R D+LL+DD+QF Sbjct: 166 HLMQAIGHYRWEICPDSKIFYVSTEQFTNDLITAIRNDSMQSFREHYRAADVLLVDDIQF 225 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP+++ SL R+ SR G+ + D Sbjct: 226 IEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPNQIPSLQERLCSRFSMGLIADIQAPDL 285 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E K+ + +V+ ++A T++ REL+GA + + + I Sbjct: 286 ETRMAILQK-----KSEYEKIRLPRDVIEYIATNFTSNIRELEGALTRALA---YISIWG 337 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + L+ ++ T K E I ++A +++IS DL SN R R + RQ+ MYL Sbjct: 338 LPMTVANLAPVLVTPTEKIAATPEAILTVIADNFDISVEDLKSNSRRREISWARQIGMYL 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T SFP IG FG +DHTTVL++ K+ +++E+D L + + L I Sbjct: 398 MRQHTDLSFPRIGEEFGGKDHTTVLYSCDKIAQLVESDRGLSQTLRQLSDRIK 450 >gi|81251053|gb|ABB69861.1| DNA replication initiator protein [Nitrosospira sp. KAN8] Length = 476 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 139/482 (28%), Positives = 241/482 (50%), Gaps = 27/482 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKF---HSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ + +N++ + +W + L+ H + + L P F+ W+K+ +L Sbjct: 4 PDTFWLACLEYFENELSAQQFNTWIKPLRLRLSHDSPESALTLIAPNRFVLQWVKDNFLS 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKT-------ASSPSITKLSPINTNISKSPII 144 IT++ + +R + + + S + S P + K+P Sbjct: 64 GITQMAENHFARPVQLRLELAGQVPASASLSIGGNNGMESRPVAAVFDAPAESAQKAPKD 123 Query: 145 LGK----QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + + L+ F F+TF+ G +N++A A +AE Y NP F Sbjct: 124 TRDTKDIKEKQEKNPTRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----NPFF 178 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHL+QAI N ++ P +V Y+ +E ++ A + K ++ Sbjct: 179 IYGGVGLGKTHLIQAIGNFVVEHNPAAKVRYIHSEQYVSDVVGAYQHKAFDEFKRYYHSL 238 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR G Sbjct: 239 DLLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRFGWG 298 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + EMR +IL + + + ++E V +A+ + ++ REL+GA ++V Sbjct: 299 LTVAVEPPELEMRVAIL-----LKKALMEDIILDESVAFFIAKHIRSNVRELEGALKRVV 353 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 F L+ ++A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V Sbjct: 354 AYSRFTGHALSLDLAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRSRVV 412 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RPRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L Sbjct: 413 ARPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNTLLH 472 Query: 499 LI 500 ++ Sbjct: 473 IL 474 >gi|121602078|ref|YP_989528.1| chromosomal replication initiation protein [Bartonella bacilliformis KC583] gi|120614255|gb|ABM44856.1| chromosomal replication initiator protein DnaA [Bartonella bacilliformis KC583] Length = 524 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 275/476 (57%), Positives = 357/476 (75%), Gaps = 8/476 (1%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + F V ++LK QVG + Y SWF RLK N+V LSVPT FL++WI N Y Sbjct: 49 EEEGAAAFARVMAQLKTQVGIEAYTSWFGRLKLSEYNRNLVKLSVPTAFLRSWINNHYGS 108 Query: 92 TITKLFQEEHSRIQGVEILVR---SVALPSVEKTASSP--SITKLSPINTNISKSPIILG 146 +T L+++E+S I VE++VR VA V +T +P +++ S + Sbjct: 109 LLTGLWKQENSAILRVEVIVRDMKRVAKNVVCRTNGNPVLPMSEKSNALPLVENYTENSA 168 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + T + VFGSPLDSR+ F +F+EG+SNRVAL AA+S+AE + +R NPLFIHASVG Sbjct: 169 RNTQTGVFGSPLDSRYTFDSFVEGASNRVALAAARSVAEGHK---SALRFNPLFIHASVG 225 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLLQAIA A++KR + RV+YLTAEYFMWRFA+AIRDN AL+ K+ LR+IDLL+ID Sbjct: 226 LGKTHLLQAIAAAALKRLTSTRVIYLTAEYFMWRFATAIRDNDALSFKEQLRDIDLLIID 285 Query: 267 DMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 DMQFLQG+ IQ+EFCHLLN LLDSAKQVV AADRPP+ELESLD R+RSRLQGGV++ + Sbjct: 286 DMQFLQGRSIQYEFCHLLNMLLDSAKQVVVAADRPPAELESLDLRVRSRLQGGVALEIEA 345 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYEMR +L+ RL I+Q++D + I++++L ++A+TV SGR+++GAFNQL+FR SF Sbjct: 346 PDYEMRLEMLRQRLKIAQQDDNTIAISDDILEYIAKTVLGSGRDIEGAFNQLLFRQSFET 405 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 L+ + DELL HL + E +++RIE+IQR VA+HYN+S+ DLLSNRR RT+V+PRQVAM Sbjct: 406 DLSLQRVDELLGHLTRSSELRRIRIEEIQRTVARHYNVSKQDLLSNRRTRTIVKPRQVAM 465 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL+K++TPRS PEIGRRFG RDHTTVLHAVRK+E ++ D TL KE+ELLKRLI E Sbjct: 466 YLAKVLTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVCDDQTLAKELELLKRLIGE 521 >gi|323486749|ref|ZP_08092068.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14163] gi|323694891|ref|ZP_08109041.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14673] gi|323399888|gb|EGA92267.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14163] gi|323500981|gb|EGB16893.1| chromosomal replication initiator protein dnaA [Clostridium symbiosum WAL-14673] Length = 456 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 144/470 (30%), Positives = 250/470 (53%), Gaps = 31/470 (6%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + +K + + + +W + + V N + + VP +IK +Y + Sbjct: 9 WDQILLHIKEEHELTDVSFKTWLLPTEPYDVKGNTLQILVPDIHFLGYIKRKYGFLLQIT 68 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 +E +E + E+ S I + +N + + + Sbjct: 69 IEELTGIECELEFVTLEQVGARQEEADKSQLINRALEVNRQV--------------IQNA 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ R+ F +F+ G++N +A A+ ++AE Y NPLFI+ VGLGKTHL+ +I Sbjct: 115 NLNPRYTFDSFVVGANNNLAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLMHSI 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQG 273 + +K P +V+Y+T+E F AIR+ ++ RN D+LLIDD+QF+ G Sbjct: 170 GHFILKNNPQAKVLYVTSEKFTNELIDAIRNKNNISTTEFREKYRNNDILLIDDIQFIIG 229 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H NSL ++ KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R Sbjct: 230 KESTQEEFFHTFNSLYEAKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETR 289 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+ ++E NI+ EV+ ++A V ++ REL+GA ++V +T E Sbjct: 290 MAILRK-----KEELEGYNIDNEVIKYIATNVKSNIRELEGALTKIVALSKLNKQEITIE 344 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+E L L++ ETK++ E I ++VA H+ I+ D+ S +R + VV PRQ+ M+L + Sbjct: 345 LAEEALKDLISPNETKEVTPELIIQVVADHFGITPLDISSQKRNKEVVFPRQIVMFLCRS 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT IG+ G RDHTT++H K+ ++ + +L+ +E+LK+ I+ Sbjct: 405 MTDTPLQAIGKYLGGRDHTTIIHGYEKIGADMDKNESLRNTIEILKKKIN 454 >gi|145588190|ref|YP_001154787.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046596|gb|ABP33223.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 475 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 143/468 (30%), Positives = 238/468 (50%), Gaps = 15/468 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETITK 95 + S L ++ P + +W Q L S + L+V P F WIK + + + Sbjct: 18 FWDGAISALSRELSPQQFKTWIQPLTLVSFDESDCSLTVGAPNRFKLDWIKKTFADRFQE 77 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L E S + ++ +P I P + + S I + +Q+ Sbjct: 78 LASEYFSGPININFVLAVEGSAPTPSNVPAPEIDMSEPQSQDESSPIISVEEQSFEIEDH 137 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F TF+ G +N++A A+ +A Y NP+F++ VGLGKTHL+ A Sbjct: 138 SKLNPNLTFETFVTGKANQLARAASIQVAHNPGTSY-----NPMFLYGGVGLGKTHLIHA 192 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N +K +PN R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 193 IGNHLLKEKPNARIRYIHAEQYVSDVVRAYQQKAFDRFKRYYHSLDLLLIDDIQFFSGKS 252 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +LL + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 253 RTQEEFFYAFEALLSNKSQVIITSDTYPKEMAGIDDRLISRFDSGLTVAIEPPELEMRVA 312 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + + E+V VA+ + ++ REL+GA +++ F +T ++A Sbjct: 313 IL-----MKKAASEGIPMTEDVAFFVAKHLRSNVRELEGALRKILAFVRFHGREVTIDVA 367 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L L++ +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AM+++K +T Sbjct: 368 RIALKDLLSIQ-NRQISVENIQKAVADFYSIKVADMYSKKRPANIARPRQIAMFMAKELT 426 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +S PEIG FG RDHTTVLHAVRK+ + D L E+ ++++ + Sbjct: 427 QKSLPEIGELFGGRDHTTVLHAVRKIGEERSHDSQLNHEIHVIEQTLK 474 >gi|260563084|ref|ZP_05833570.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. 16M] gi|260153100|gb|EEW88192.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. 16M] Length = 529 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 30 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 89 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 90 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 149 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 150 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 209 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 210 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 266 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 267 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 326 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 327 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 386 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 387 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 446 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 447 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 506 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 507 VGADTKLAQELELLKRLIND 526 >gi|254451709|ref|ZP_05065146.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 238] gi|198266115|gb|EDY90385.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 238] Length = 454 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 165/464 (35%), Positives = 269/464 (57%), Gaps = 27/464 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V + +++ +G + +W + L S + +L+ P F+ ++ Y + I Sbjct: 14 WDQVKTDMRSAIGVGNFKNWIEPLSLVSTSEGVAYLAAPNPFVGDYVGKTYGDQIIYHLN 73 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + +Q + + A +V A+ P + K P NT + P Sbjct: 74 RQGLAVQRLAFEIEGKANTAVN-DAAKPVVRK--PTNTLVDAQP---------------- 114 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F +F+ G N +A A++ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 115 DQRFTFDSFVVGKPNELAHAASKRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHAIAH 169 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQ 277 +R+P+L V+Y++A+ F++RF SA+RD ++ K R++D+L++DD+QFL+GK Q Sbjct: 170 ELGERRPDLNVLYVSADQFIYRFISALRDRKMMDFKQHFRSVDVLMVDDIQFLEGKESTQ 229 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L D KQ++ +ADR P E+ L RI+SRLQ G+ V L DYE+R IL Sbjct: 230 EEFFHTYNALADQGKQMIISADRAPGEIRDLSERIKSRLQCGLVVDLHPTDYELRLGILH 289 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 + + P + I VL +A ++++ R L+GA N+L S +T E+A + Sbjct: 290 AKQEMFVNVYPGVEIATGVLEFLAHRISSNVRVLEGALNRLYALASMVGRTVTVEMAQDC 349 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LS ++ +K+ IE+IQR V++H++I +D+L ++R RT+ RPRQVAM+L K +T RS Sbjct: 350 LSDILRAS-DRKLTIEEIQRKVSEHFDIRLSDMLGSKRTRTLARPRQVAMWLCKRLTSRS 408 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PEIGR+FG RDHTT++H VRK++++ ++D + ++ELL+R + Sbjct: 409 LPEIGRKFGKRDHTTIMHGVRKIDELRQSDSQIADDLELLRRAL 452 >gi|254690318|ref|ZP_05153572.1| chromosomal replication initiation protein [Brucella abortus bv. 6 str. 870] gi|254696435|ref|ZP_05158263.1| chromosomal replication initiation protein [Brucella abortus bv. 2 str. 86/8/59] gi|254700819|ref|ZP_05162647.1| chromosomal replication initiation protein [Brucella suis bv. 5 str. 513] gi|254707298|ref|ZP_05169126.1| chromosomal replication initiation protein [Brucella pinnipedialis M163/99/10] gi|254709163|ref|ZP_05170974.1| chromosomal replication initiation protein [Brucella pinnipedialis B2/94] gi|256030687|ref|ZP_05444301.1| chromosomal replication initiation protein [Brucella pinnipedialis M292/94/1] gi|256045791|ref|ZP_05448669.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. Rev.1] gi|256060146|ref|ZP_05450328.1| chromosomal replication initiation protein [Brucella neotomae 5K33] gi|256112510|ref|ZP_05453431.1| chromosomal replication initiation protein [Brucella melitensis bv. 3 str. Ether] gi|256258572|ref|ZP_05464108.1| chromosomal replication initiation protein [Brucella abortus bv. 9 str. C68] Length = 540 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 161 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 220 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 221 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 277 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 278 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 337 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 338 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 397 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 398 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 457 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 458 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 517 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 518 VGADTKLAQELELLKRLIND 537 >gi|17988226|ref|NP_540860.1| chromosomal replication initiation protein [Brucella melitensis bv. 1 str. 16M] gi|260546286|ref|ZP_05822026.1| chromosomal replication initiation protein [Brucella abortus NCTC 8038] gi|265999709|ref|ZP_05467476.2| chromosomal replication initiation protein [Brucella melitensis bv. 2 str. 63/9] gi|17983991|gb|AAL53124.1| chromosomal replication initiator protein dnaa [Brucella melitensis bv. 1 str. 16M] gi|260096393|gb|EEW80269.1| chromosomal replication initiation protein [Brucella abortus NCTC 8038] gi|263095429|gb|EEZ19030.1| chromosomal replication initiation protein [Brucella melitensis bv. 2 str. 63/9] gi|326408012|gb|ADZ65077.1| chromosomal replication initiation protein [Brucella melitensis M28] gi|326537730|gb|ADZ85945.1| chromosomal replication initiator protein DnaA [Brucella melitensis M5-90] Length = 527 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 28 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 87 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 88 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 147 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 148 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 207 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 208 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 264 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 265 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 324 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 325 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 384 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 385 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 444 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 445 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 504 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 505 VGADTKLAQELELLKRLIND 524 >gi|189023269|ref|YP_001934037.1| chromosomal replication initiation protein [Brucella abortus S19] gi|225851547|ref|YP_002731780.1| chromosomal replication initiation protein [Brucella melitensis ATCC 23457] gi|297247409|ref|ZP_06931127.1| chromosomal replication initiator protein DnaA [Brucella abortus bv. 5 str. B3196] gi|189018841|gb|ACD71563.1| chromosomal replication initiation protein [Brucella abortus S19] gi|225639912|gb|ACN99825.1| chromosomal replication initiator protein DnaA [Brucella melitensis ATCC 23457] gi|297174578|gb|EFH33925.1| chromosomal replication initiator protein DnaA [Brucella abortus bv. 5 str. B3196] Length = 546 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 166 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 167 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 226 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 227 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 283 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 284 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 343 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 344 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 403 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 404 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 463 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 464 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 523 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 524 VGADTKLAQELELLKRLIND 543 >gi|163845604|ref|YP_001633648.1| chromosomal replication initiation protein [Chloroflexus aurantiacus J-10-fl] gi|222523303|ref|YP_002567773.1| chromosomal replication initiation protein [Chloroflexus sp. Y-400-fl] gi|189044632|sp|A9WAN1|DNAA_CHLAA RecName: Full=Chromosomal replication initiator protein DnaA gi|254777893|sp|B9LFG0|DNAA_CHLSY RecName: Full=Chromosomal replication initiator protein DnaA gi|163666893|gb|ABY33259.1| chromosomal replication initiator protein DnaA [Chloroflexus aurantiacus J-10-fl] gi|222447182|gb|ACM51448.1| chromosomal replication initiator protein DnaA [Chloroflexus sp. Y-400-fl] Length = 479 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 150/485 (30%), Positives = 244/485 (50%), Gaps = 26/485 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N I+ S L+ Q Y + + S+ + + V + K ++NR L Sbjct: 1 MNLTQIWKATLSALQTQTSRHDYEALLRPATLLSLDNGAAFIGVSSPGQKEGLENRLLMP 60 Query: 93 ITKLFQEEHSRIQGVEILV-----RSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + V++L+ R+ PS+ + S ++ P+ + G Sbjct: 61 LRNALARVVGYPVQVQVLIANLNSRTEPSPSLTLSNGSRLMSDPEPVVAETPAPALTPGN 120 Query: 148 QT---------ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 T S + L+ R+ FS+FI GSSNR+A A ++A+ Y NP Sbjct: 121 GTGERVVQLDLASAMRSGMLNPRYTFSSFIVGSSNRLAHAACLAVADNPGQAY-----NP 175 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LF++ VGLGKTHLL AI N + R P + V+Y+++E F +AIR + R Sbjct: 176 LFLYGGVGLGKTHLLHAIGNRVLDRDPEINVLYVSSEKFTNDLINAIRRQQTEEFRMRYR 235 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 NID+LLIDD+QF+ GK Q EF H N+L +AK +V ++DRPP + +L+ R+RSR + Sbjct: 236 NIDVLLIDDIQFIAGKDATQEEFFHTFNTLHSAAKHIVISSDRPPKAILTLEERLRSRFE 295 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ V + D E R +IL+ ++ E +++ +EV+ +A + ++ REL+G+ N+ Sbjct: 296 WGLIVDVQPPDLETRTAILR-----AKAEQMSVHVPDEVIDFLAHKIQSNIRELEGSLNR 350 Query: 378 LVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 + +T E A L+ L+ +++ E I ++V++HY I L + R R Sbjct: 351 VAAYAELNRAPITIETATAALADLLGNQRRRRISAEAILQIVSEHYGIEVEQLRARNRSR 410 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 VV PRQVAMYL + T S +IG G RDHTTV++ K+ + + +D L+ EV + Sbjct: 411 HVVVPRQVAMYLLREETESSLVDIGNLLGGRDHTTVMYGCEKIAEEINSDSRLRSEVMAI 470 Query: 497 KRLIS 501 + I Sbjct: 471 RERIQ 475 >gi|218297059|ref|ZP_03497736.1| chromosomal replication initiator protein DnaA [Thermus aquaticus Y51MC23] gi|218242614|gb|EED09151.1| chromosomal replication initiator protein DnaA [Thermus aquaticus Y51MC23] Length = 441 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 153/472 (32%), Positives = 260/472 (55%), Gaps = 34/472 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + E+++ V ++ + Y +WF+R++ + ++ L+VPT+F WIK Y Sbjct: 1 MALTHEAVWQHVLEHIRRNITEVEYHTWFERIRPLGIREGVLELAVPTSFALDWIKRHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + +++ E+LV A V+ I Sbjct: 61 PLIQEALGLLGAQVPRFELLVVPGAAQPVQVD---------------------IFQAVPQ 99 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKT Sbjct: 100 ADQGKSKLNPKYTFENFVVGPNNNLAHAAAVAVAESPGKAY-----NPLFIYGGVGLGKT 154 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ A+ ++ KR P+L++ Y++ E F +AIR++ ++ R++DLLL+DD+QF Sbjct: 155 HLMHAVGHSVAKRFPSLKIEYVSTETFTNELINAIREDRMAEFRERYRSVDLLLVDDIQF 214 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D Sbjct: 215 IAGKERTQEEFFHTFNALFEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDL 274 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK E L I E+VL ++AR VT++ REL+GA ++V S + L Sbjct: 275 ETRIAILK-----MNAEQRGLRIGEDVLEYIARQVTSNIRELEGALMRVVAYASLNGVEL 329 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A + LS + ++ ++I R+VA+H+ + DL+ R + VV PRQ+AM+L Sbjct: 330 TRQVAAKALSDIFAPR-EVEVDPQEIVRVVAEHFGLRPEDLVGGGRRKEVVLPRQMAMFL 388 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S PEIG+ FG RDHTTVL+A++KV+++ E+D ++ + LK + Sbjct: 389 VRELTRASLPEIGQLFGGRDHTTVLYAIQKVQELSESDREVQAILRTLKEKV 440 >gi|83591341|ref|YP_425093.1| chromosomal replication initiation protein [Rhodospirillum rubrum ATCC 11170] gi|83574255|gb|ABC20806.1| chromosomal replication initiator protein, DnaA [Rhodospirillum rubrum ATCC 11170] Length = 509 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 174/496 (35%), Positives = 270/496 (54%), Gaps = 40/496 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + + V LK + G Y +W + + + V L+VPT F++ W+ N Y + I Sbjct: 23 DLSASWDRVRGFLKREFGDSAYRTWVVPMTLVAAVEGEVRLAVPTRFMRDWVMNHYGDRI 82 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-------- 145 L+ E S I+ V+ +V S P+ A + + + P Sbjct: 83 RSLWAAEDSSIRYVDFIVESAPAPAPPARAGQDADRAEGASDPAAGQRPAEAGAPRPAAR 142 Query: 146 -------------------GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 + +PLD RF F F+ G N A AA+ +A+ Sbjct: 143 ASRTMVRVAAEGGAEGADSAPAPLDDGISAPLDPRFTFDNFVVGKPNEFAYAAAKRVADS 202 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 T V NPLF++ VGLGKTHL+ AIA + P+ RV+YL+AE FM RF A+R Sbjct: 203 -----TGVAFNPLFLYGGVGLGKTHLMHAIARGIREASPHRRVIYLSAEQFMHRFIRALR 257 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 ++ K+ R++++L++DD+QF+ GK Q EF H N+L+D Q+V +AD+ P++L Sbjct: 258 QQDTMSFKEQFRSVEVLMVDDIQFISGKDSTQEEFFHTFNALVDQGSQIVLSADKSPTDL 317 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 E++ R+RSR+ G+ L YE+R IL+ S+ E +++ E+VL +A + Sbjct: 318 ENIGARLRSRMACGLVADLHPTTYELRLGILE-----SKAEHMGVSVPEKVLEFIAHKIA 372 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++GRE++GA +L+ LT E A ++L L+ T K++ +++IQ+ VA+H+ I Sbjct: 373 SNGREVEGALIRLIAHAQLVGRDLTLETAQDVLHDLLRT-YDKRVTVDEIQKKVAEHFKI 431 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 D+ S RR R V RPRQVAMYL K +T RS PEIG+ FG RDHTTV+HAVRKVE+++ Sbjct: 432 RLADMHSARRARAVARPRQVAMYLCKQLTSRSLPEIGKSFGGRDHTTVMHAVRKVEELIL 491 Query: 485 TDITLKKEVELLKRLI 500 D T ++VELL+R++ Sbjct: 492 ADGTFAEDVELLRRML 507 >gi|149278100|ref|ZP_01884239.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] gi|149231298|gb|EDM36678.1| chromosomal replication initiator protein [Pedobacter sp. BAL39] Length = 477 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 128/485 (26%), Positives = 252/485 (51%), Gaps = 24/485 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ C ++ +K+ + + +WF+ + + +++ + VP+ F W++ Y+ Sbjct: 1 MQNTCTQVWNNCLQIIKDNIPAQSFKTWFEPISALKLEGSVLTVQVPSLFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNIS-KSPIILGK 147 + K +++ +E I+V ++ T + PS +S N S P+ + + Sbjct: 61 ALLRKTVKQQLGAEGRLEYNIVVDKSTNGALPYTTNMPSNGSMSSNNRKQSMPVPVNVNR 120 Query: 148 QTISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 +P L++ + F TF+EG NR+A +A +++ NP Sbjct: 121 DIKNPFVIPGLKKMNVDPQLNANYTFDTFVEGDCNRLARSAGHAVSAKPG----ATSFNP 176 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L I+ + GLGKTHL QAI N + P+ V+YL+ E F +F ++++N + + + Sbjct: 177 LMIYGASGLGKTHLAQAIGNEIRQNLPDKLVIYLSCEKFCQQFVESLKNNTINDFVNFYQ 236 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +D++++DD+ GK Q F H+ N L S KQ++ +D+ P +L L+ R+ SR + Sbjct: 237 AMDVIIMDDIHNFAGKEKTQDIFFHIFNHLHQSGKQIIITSDKSPKDLTGLEERLLSRFK 296 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+S L + + E R +IL+ ++ +++ +EV+ +VA + + REL+GA Sbjct: 297 WGLSADLQIPELETRIAILRKKMYAD-----GIDLPDEVVEYVAHNIDNNVRELEGAMVS 351 Query: 378 LVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+ + + + ++A +L + + TK++ ++ IQ++V ++ + + L + R R Sbjct: 352 LLAQSTMNKKEIDLQLAKSMLKNFIKN-TTKEVSMDYIQKLVCDYFEVPVHLLKAPTRKR 410 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V+ RQ++MYLSK MT S IG FG RDH+TV++A + VE +++TD T + V + Sbjct: 411 EIVQARQISMYLSKGMTKSSLKTIGAFFGGRDHSTVIYACQTVEDLIQTDKTFRSYVNDI 470 Query: 497 KRLIS 501 ++ + Sbjct: 471 EKKLK 475 >gi|254705186|ref|ZP_05167014.1| chromosomal replication initiation protein [Brucella suis bv. 3 str. 686] Length = 540 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 139 SKSPIILGKQTI----------------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 161 FPVGQSFGGQSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAAART 220 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 221 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 277 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 278 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 337 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 338 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 397 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 398 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 457 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 458 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 517 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 518 VGADTKLAQELELLKRLIND 537 >gi|260567348|ref|ZP_05837818.1| chromosomal replication initiation protein [Brucella suis bv. 4 str. 40] gi|260156866|gb|EEW91946.1| chromosomal replication initiation protein [Brucella suis bv. 4 str. 40] Length = 527 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 28 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 87 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 88 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 147 Query: 139 SKSPIILGKQTI----------------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 148 FPVGQSFGGQSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAAART 207 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 208 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 264 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 265 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 324 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 325 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 384 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 385 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 444 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 445 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 504 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 505 VGADTKLAQELELLKRLIND 524 >gi|161617992|ref|YP_001591879.1| chromosomal replication initiation protein [Brucella canis ATCC 23365] gi|161334803|gb|ABX61108.1| chromosomal replication initiator protein DnaA [Brucella canis ATCC 23365] Length = 546 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 166 Query: 139 SKSPIILGKQTI----------------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 167 FPVGQSFGGQSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAAART 226 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 227 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 283 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 284 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 343 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 344 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 403 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 404 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 463 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 464 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 523 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 524 VGADTKLAQELELLKRLIND 543 >gi|163842278|ref|YP_001626682.1| chromosomal replication initiation protein [Brucella suis ATCC 23445] gi|163673001|gb|ABY37112.1| chromosomal replication initiator protein DnaA [Brucella suis ATCC 23445] Length = 546 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 166 Query: 139 SKSPIILGKQTI----------------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 167 FPVGQSFGGQSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAAART 226 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 227 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 283 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 284 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 343 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 344 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 403 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 404 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 463 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 464 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 523 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 524 VGADTKLAQELELLKRLIND 543 >gi|114330037|ref|YP_746259.1| chromosomal replication initiator protein DnaA [Nitrosomonas eutropha C91] gi|122314857|sp|Q0AK27|DNAA_NITEC RecName: Full=Chromosomal replication initiator protein DnaA gi|81251096|gb|ABB69893.1| DNA replication initiator protein [Nitrosomonas sp. CNS332] gi|114307051|gb|ABI58294.1| chromosomal replication initiator protein DnaA [Nitrosomonas eutropha C91] Length = 459 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 238/471 (50%), Gaps = 22/471 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLET 92 E+ + K ++ + +W + LK N + L P F+ WIK+ ++ Sbjct: 4 IETFWYFCLKHFKQELNGQQFNTWIKPLKLEICPDVENTLVLIAPNRFVLQWIKDNFVNR 63 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK-QTIS 151 I ++ Q + ++ ++ A + +I P + K P T Sbjct: 64 IDEMAQGHFNEKIHFKLELKDPA------EIKTATIKAPEPKSKEDKKPPTDKAHGTTAR 117 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 S L+ F F F+ G +N++A A +AE Y NPLFI+ VGLGKTH Sbjct: 118 KTNPSRLNPAFTFDAFVTGKANQLARAGAIQVAERPGIAY-----NPLFIYGGVGLGKTH 172 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ A+ N ++ ++ Y+ AE ++ SA + K ++DLLL+DD+QF Sbjct: 173 LMHAVGNYVMELDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQFF 232 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L+++ KQV+ +D P E+ L+ R+ SR G++V + + E Sbjct: 233 SGKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPELE 292 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 MR +IL + + K+ ++E +A+ + ++ REL+GA +++ F ++ Sbjct: 293 MRVAIL-----LKKAFIEKIELDESTAFFIAKYIRSNVRELEGALKRVLAYSRFTGHPIS 347 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L L+ +++ IE+IQ+ VA +Y I D+ S +RVR + RPRQVAM ++ Sbjct: 348 LDLAKEALKDLLAIQ-NRQISIENIQKTVADYYKIKVADMYSKKRVRAIARPRQVAMAIA 406 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T S P+IG FG RDHTTVLHA RK+ ++ +D + ++ L ++ Sbjct: 407 KELTQLSLPDIGEAFGGRDHTTVLHAHRKIVELRASDPGINRDYSTLIHIL 457 >gi|306842704|ref|ZP_07475347.1| chromosomal replication initiator protein DnaA [Brucella sp. BO2] gi|306287150|gb|EFM58652.1| chromosomal replication initiator protein DnaA [Brucella sp. BO2] Length = 540 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCENAEAKPAITPREKMV 160 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 161 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 220 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 221 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 277 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 278 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 337 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 338 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 397 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 398 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 457 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 458 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 517 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 518 VGADTKLAQELELLKRLIND 537 >gi|306843603|ref|ZP_07476204.1| chromosomal replication initiator protein DnaA [Brucella sp. BO1] gi|306276294|gb|EFM57994.1| chromosomal replication initiator protein DnaA [Brucella sp. BO1] Length = 546 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 288/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCENAEAKPAITPREKMV 166 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 167 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 226 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 227 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 283 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 284 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 343 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 344 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 403 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 404 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 463 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 464 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 523 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 524 VGADTKLAQELELLKRLIND 543 >gi|119509172|ref|ZP_01628323.1| chromosomal replication initiation protein [Nodularia spumigena CCY9414] gi|119466338|gb|EAW47224.1| chromosomal replication initiation protein [Nodularia spumigena CCY9414] Length = 459 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 242/473 (51%), Gaps = 24/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ +++++ V RL+ ++ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MEIPIDNLWSQVLERLQLELSRPTFETWIKTAHAERLENNCLVIITPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI + Q+ I G + + E T S + +++ + KQ Sbjct: 61 NTIANVVQD----ILGHTVEIYLTVAQGDEMTNLGESEVTWELPSQSMTAESVPQNKQPP 116 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+S++VFS F+ G++NR+A A+ ++AE NPLF+ VGLGKT Sbjct: 117 KD-----LNSKYVFSRFVVGANNRMAHAASLAVAESPGR-----EFNPLFLCGGVGLGKT 166 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + + P+ ++ Y++ E F +AIR++ N ++ R D+LL+DD+QF Sbjct: 167 HLMQAIGHYRSQICPDSKIFYVSTEQFTNDLITAIRNDSMQNFREHYRAADVLLVDDIQF 226 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP + L R+ SR G+ + D Sbjct: 227 IEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPHHIPQLQERLCSRFSMGLIADVQTPDL 286 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + + +V+ ++A T + REL+GA + + + I Sbjct: 287 ETRMAILQK-----KAEYENIRLPRDVIEYIASNYTNNIRELEGALIRALA---YISIWG 338 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++ K E I ++ ++ IS DL SN R R + RQ+ MYL Sbjct: 339 LPMTVENITPVLERQSEKVAATPEVILSVIGDNFAISIEDLKSNSRRREISWARQIGMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV+++ K+ ++L++D TL + + L I+ Sbjct: 399 MRQHTDLSLPRIGEEFGGKDHTTVIYSCDKIAQLLQSDRTLVQTLRQLSDRIN 451 >gi|254731347|ref|ZP_05189925.1| chromosomal replication initiation protein [Brucella abortus bv. 4 str. 292] Length = 540 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 287/500 (57%), Positives = 368/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF R+K + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRMKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 161 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 220 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 221 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 277 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 278 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 337 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 338 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 397 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 398 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 457 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 458 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 517 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 518 VGADTKLAQELELLKRLIND 537 >gi|226942152|ref|YP_002797226.1| DnaA [Laribacter hongkongensis HLHK9] gi|254777904|sp|C1D6I2|DNAA_LARHH RecName: Full=Chromosomal replication initiator protein DnaA gi|226717079|gb|ACO76217.1| DnaA [Laribacter hongkongensis HLHK9] Length = 481 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 137/489 (28%), Positives = 237/489 (48%), Gaps = 32/489 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + +R + ++ + +W + L + I L F ++K R+L Sbjct: 2 TDLSAFWPQCLARFEAELSAQQFNTWIKPLVCVAGEDAIA-LYAANRFSLGFVKERFLSR 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP------------------SITKLSPI 134 I ++ R +E+ + + A+SP S+ Sbjct: 61 IETFAEDILGRPVTIELRIGGAQAGASAPAAASPRSPGRPAPAPVAATPTTGSLADSIVS 120 Query: 135 NTNISKSPIILGKQTISPVFGS-PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + + + K I S L+ F F + + G N++A AA IA+ Sbjct: 121 DVPLPNVKLTAPKPAIGGGHESTRLNPAFTFESLVTGKGNQLARAAALQIADNPG----D 176 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NP F++ VGLGKTHL+QAI N ++ P ++ Y+ AE ++ A + Sbjct: 177 STYNPFFVYGGVGLGKTHLIQAIGNHVYQKNPQAKIRYIHAERYVADIMRAYQHKAFDEF 236 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 K ++DLLLIDD+QF GK EF + N+LL+ KQV+ D P ++E +D R+ Sbjct: 237 KRYYHSLDLLLIDDIQFFAGKNRTMEEFFYAFNALLEGGKQVIMTCDSYPKQIEGMDERL 296 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 SR G++V + + EMR +IL + + E L + +V +A+ V ++ REL+ Sbjct: 297 ISRFSWGLTVEIQPPELEMRVAIL-----MKKAEADNLKLGNDVAFFIAQNVRSNVRELE 351 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA ++V F ++ ++ E L ++ G +++ +++IQ+ VA +Y I +D+ S Sbjct: 352 GALKRVVAYSRFSNQPISLDLVKEALKDILAAG-NRQISVDNIQKTVADYYKIKLSDMHS 410 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 +R R + RPRQVAM L+K +T S P IG FG RDHTTVLHA + + +M E+D + + Sbjct: 411 KKRSRDIARPRQVAMALAKELTSMSLPNIGDAFGGRDHTTVLHACKTIAEMRESDPDISR 470 Query: 492 EVELLKRLI 500 + L++++ Sbjct: 471 DYAALQQML 479 >gi|124007462|ref|ZP_01692168.1| chromosomal replication initiator protein DnaA [Microscilla marina ATCC 23134] gi|123987118|gb|EAY26867.1| chromosomal replication initiator protein DnaA [Microscilla marina ATCC 23134] Length = 493 Score = 461 bits (1187), Expect = e-127, Method: Composition-based stats. Identities = 131/500 (26%), Positives = 247/500 (49%), Gaps = 28/500 (5%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 ++ D ++ +C +++ ++ Q+ Y +WF +K ++ ++ + VP+ F Sbjct: 1 MENDSISVQKDCYTVWENCLKVIRTQIAEQTYTTWFDPIKPLKLVDKVLTIQVPSRFFYE 60 Query: 84 WIKNRYLETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKS 141 W++ Y+ + K +E I++ P + S + + + Sbjct: 61 WLEEHYVHLLRKAIDASLGTEGRLEYTIIMEKQEKPYLPNHNSPQFVQNNDNHTKPQNSA 120 Query: 142 PII-----------------LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 P K+T ++ R+ F +FIEG NR+A +A ++A Sbjct: 121 PAQQKNYSNNNYNNVNNSPNTPKKTSQFNQTFQINPRYTFESFIEGDCNRLARSAGLAVA 180 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPL ++ VGLGKTHL+QAI N + +++Y++++ F +F A Sbjct: 181 QKPG----VTSFNPLMLYGGVGLGKTHLVQAIGNYVQENG-QKKILYVSSDRFTNQFIEA 235 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +++N + D D+L IDD+QFL GK Q F ++ N L S KQ++ +D PP Sbjct: 236 LKNNDLQSFTDYYMQADVLAIDDVQFLSGKEKTQEIFFNIFNHLHQSGKQIIMTSDCPPK 295 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 EL+ L R+ SR + G++ L D E R +I+ L ++ + I+ +V+ ++A + Sbjct: 296 ELKGLQERLLSRFKWGLTADLKQPDLETRIAIIHKILQSE--DNKNIEISGKVVEYLAHS 353 Query: 364 VTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + ++ REL+GA ++ + S +T E+A + + +V ++ ++ I+++Q+ V ++ Sbjct: 354 IDSNVRELEGAIVSIIAKASLNQSPITMELAKQTVQQIVQPVDSSEINIDEVQKYVGDYF 413 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 +S L S R + +V RQ+AMY +K T S IG FG RDH+TV+HA++ V M Sbjct: 414 GVSVEMLKSKTRKKEIVIARQIAMYFAKEYTGFSLKSIGYHFGGRDHSTVIHAIQTVNDM 473 Query: 483 LETDITLKKEVELLKRLISE 502 + LK ++ L++ S+ Sbjct: 474 MSEKKELKMYIDDLRKKFSK 493 >gi|254718225|ref|ZP_05180036.1| chromosomal replication initiation protein [Brucella sp. 83/13] Length = 540 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 287/500 (57%), Positives = 366/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILV--------RSVALPSVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I VE++V + + E + P+IT + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRNAAPAETCENAEAKPAITPREKMV 160 Query: 136 TNISKS-------------PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 + +S + V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 161 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 220 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 221 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 277 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 278 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 337 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 338 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 397 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 398 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 457 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 458 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 517 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 518 VGADTKLAQELELLKRLIND 537 >gi|306839965|ref|ZP_07472759.1| chromosomal replication initiator protein DnaA [Brucella sp. NF 2653] gi|306404929|gb|EFM61214.1| chromosomal replication initiator protein DnaA [Brucella sp. NF 2653] Length = 546 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 287/500 (57%), Positives = 366/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILV--------RSVALPSVEKTASSPSITKLSPIN 135 WI N Y E +T+L+QEE+ +I VE++V + + E + P+IT + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRNAAPAETCENAEAKPAITPREKMV 166 Query: 136 TNISKS-------------PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 + +S + V GSPLD R+ F TF++G+SNRVAL AA++ Sbjct: 167 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAART 226 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 227 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 283 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 284 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 343 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 344 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 403 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 404 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 463 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 464 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 523 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 524 VGADTKLAQELELLKRLIND 543 >gi|326314824|ref|YP_004232496.1| chromosomal replication initiator protein DnaA [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371660|gb|ADX43929.1| chromosomal replication initiator protein DnaA [Acidovorax avenae subsp. avenae ATCC 19860] Length = 473 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 151/493 (30%), Positives = 248/493 (50%), Gaps = 28/493 (5%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVH 73 E ++P+ D D + ++ +L + + +W + L + V Sbjct: 2 TEEPSRSPDFDTDAD----PGQGLWQACVEQLAQDLPEQQFNTWIKPLVAQVAPDFSKVT 57 Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV---RSVALPSVEKTASSPSITK 130 L V F WI+ +Y IT L + + + +E+ + SV V P+ Sbjct: 58 LLVANRFKLDWIRAQYAGRITALLEGLYGQPVTLELALAQRESVTRTVVRPVVQQPTAPA 117 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 +PI + + P F S L+ F T +EG++NR+A +AA +A H Sbjct: 118 ETPIGSTPADEPAAAP-------FRSRLNPALTFETLVEGTANRMARSAAMHVAGSPGHL 170 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI+ VGLGKTHL+ A+ N ++ +P+ +V+Y+ AE F+ A + Sbjct: 171 Y-----NPLFIYGGVGLGKTHLVHAVGNRLLQDKPDAKVLYIHAEQFVSDVVKAYQRRTF 225 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 K ++DLLLIDD+QF K Q EF + +LL +V +D P L ++ Sbjct: 226 DEFKAHYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIH 285 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR G++V + + EMR +IL N+ E + EEV VA+ V ++ R Sbjct: 286 ERLVSRFDSGLTVTIEPPELEMRVAILINKARAESAE-----MPEEVAFFVAKNVRSNVR 340 Query: 370 ELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA +++ F ++ ++A E L L++ +++ +E+IQ+ VA +Y I D Sbjct: 341 ELEGALRKILAYSRFNQKEVSIQLAREALRDLLSIQ-NRQISVENIQKTVADYYKIKVAD 399 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 400 MYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAGERQQLTE 459 Query: 489 LKKEVELLKRLIS 501 L +++ +L++ + Sbjct: 460 LNQQLHVLEQTLK 472 >gi|113473943|ref|YP_720004.1| chromosomal replication initiation protein [Trichodesmium erythraeum IMS101] gi|122965345|sp|Q11AE3|DNAA_TRIEI RecName: Full=Chromosomal replication initiator protein DnaA gi|110164991|gb|ABG49531.1| chromosomal replication initiator protein DnaA [Trichodesmium erythraeum IMS101] Length = 456 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 250/473 (52%), Gaps = 24/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ ++++ V RL+ Q+ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MEIYLDNLWDQVLERLQLQLSKPTFETWIKTATAEQLENNCLVIRAPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +TI + + VEI + + + K S ++ +N I+ +I Sbjct: 61 KTIADVVHDILG--YPVEIYLTTFLVEDSRKNDSGLIWSEHKSVN-------ILGENLSI 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+++++FS F+ G +NR+A A+ ++AE NPLF+ VGLGKT Sbjct: 112 PKPLPANLNAKYMFSRFVVGPNNRMAHAASLAVAESPGQ-----EFNPLFLCGGVGLGKT 166 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + + P+ ++ Y++ E F +AIR + ++ R D+LL+DD+QF Sbjct: 167 HLMQAIGHYRLDIFPHSQIFYVSTEKFTNDLIAAIRKDSLQGFREHYRAADVLLVDDIQF 226 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP+++ SL R+ SR G+ + D Sbjct: 227 IEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPNQIPSLQERLCSRFSMGLIADIQAPDL 286 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL + + E + + +V+ ++A ++ REL+GA ++V ++ I Sbjct: 287 ETRMAIL-----LKKSEYENMVLPRDVIEYIATRYPSNIRELEGALTRVV---TYISISG 338 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++N K + E + ++V++++N+S DL + R R + RQV MYL Sbjct: 339 LPMTVENIAPILNPKTEKLEASPEAVIKVVSENFNLSIEDLKGSSRKREITLARQVGMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P+IG FG +DHTTVL++ K+ ++ +D+ L + + L I+ Sbjct: 399 MRQHTDLSLPKIGEVFGGKDHTTVLYSCDKISQLQNSDLNLVQTIRQLSDRIN 451 >gi|325284917|ref|YP_004260707.1| Chromosomal replication initiator protein dnaA [Cellulophaga lytica DSM 7489] gi|324320371|gb|ADY27836.1| Chromosomal replication initiator protein dnaA [Cellulophaga lytica DSM 7489] Length = 474 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 145/484 (29%), Positives = 249/484 (51%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V ES++ S +K+ + P + +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MSVTAESVWNNCLSFIKDNIQPQAFKTWFEPIKPIKLSDNSLSVQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + +E + ++R + +PS +T SP + + N Sbjct: 61 KLLKVSLTKELGENAKLVYIIRMENTYGNREPFTEKIPSSNRTTVSPQELDVPIKSKNPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LRNPFVIPGIRNIKIESQLNPNYNFDNFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDILIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SILKN+L E + EE++ +VA+ + ++ REL+GA L Sbjct: 297 GLSAELQTPDYETRVSILKNKLYRDGVE-----MPEEIIDYVAKNIKSNIRELEGAVISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF +T E+A +++ V +++ I+ IQ++V+ ++ + + L S R R Sbjct: 352 IAQSSFNKKEITIELAQQIVEKFVKN-TKREVSIDYIQKVVSDYFEMDVSTLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + ETD +K +E L Sbjct: 411 IVQARQLAMFFAKRFTKASLASIGSQIGKRDHATVLHACKTVDNLAETDKQFRKYIEDLT 470 Query: 498 RLIS 501 + S Sbjct: 471 KKFS 474 >gi|254437134|ref|ZP_05050628.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] gi|198252580|gb|EDY76894.1| chromosomal replication initiator protein DnaA [Octadecabacter antarcticus 307] Length = 446 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 164/464 (35%), Positives = 264/464 (56%), Gaps = 27/464 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V + ++ +G + SW + L + + HL+ P F+ ++ Y + I Sbjct: 6 WDQVKTDMRAAIGAGNFKSWIEPLSLVTTSEGVAHLAAPNPFVGDYVGKTYGDQIIYHLN 65 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + +Q + + A + +A + P NT P Sbjct: 66 RQGLAVQRLAFEIEGKANTATNVSAKPAA---QKPANTLADAQP---------------- 106 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + RF F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA+ Sbjct: 107 NQRFNFDSFVVGKPNELAHAAAKRVAEG-----GPVTFNPLFLYGGVGLGKTHLMHAIAH 161 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQ 277 R+P+L V+Y++A+ F++RF SA+RD ++ K R++D+L++DD+QFL+GK Q Sbjct: 162 ELGLRRPDLNVLYVSADQFIYRFISALRDRKMMDFKQHFRSVDVLMVDDIQFLEGKESTQ 221 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L D KQ++ +ADR P E+ L RI+SRLQ G+ V L DYE+R IL Sbjct: 222 EEFFHTYNALADQGKQMIISADRAPGEIRDLSERIKSRLQCGLVVDLHPTDYELRLGILH 281 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 ++ + P + I VL +A ++++ R L+GA N+L S ++T E+A + Sbjct: 282 SKQEMFVNVYPGVEIATGVLEFLAHRISSNVRVLEGALNRLYALASLVGRVVTVEMAQDC 341 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LS ++ +K+ IE+IQR V++HY+I +D+L +R RT+ RPRQVAM+L K +T RS Sbjct: 342 LSDILRAS-DRKLTIEEIQRKVSEHYDIRLSDMLGPKRTRTLARPRQVAMWLCKRLTSRS 400 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PEIGR+FG RDHTT++H VRK++++ ++D + ++ELL+R + Sbjct: 401 LPEIGRKFGKRDHTTIMHGVRKIDELRQSDSQISDDLELLRRAL 444 >gi|81251100|gb|ABB69896.1| DNA replication initiator protein [Nitrosomonas sp. IWT310] Length = 459 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 238/471 (50%), Gaps = 22/471 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLET 92 E+ + K ++ + +W + LK N + L P F+ WIK+ ++ Sbjct: 4 IETFWYFCLKHFKQELNGQQFNTWIKPLKLKICPDVENTLVLIAPNRFVLQWIKDNFVNR 63 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK-QTIS 151 I ++ Q + ++ ++ A + +I P N K P T Sbjct: 64 IDEMAQGHFNEKIHFKLELKDPA------EIETATIKAPEPKNKEDKKPPTDKAHGTTAR 117 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 S L+ F F F+ G +N++A A +AE Y NPLFI+ VGLGKTH Sbjct: 118 KTNPSRLNPAFTFDAFVTGKANQLARAGAIQVAERPGIAY-----NPLFIYGGVGLGKTH 172 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ A+ N ++ ++ Y+ AE ++ SA + K ++DLLL+DD+QF Sbjct: 173 LMHAVGNYVMELDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQFF 232 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L+++ KQV+ +D P E+ L+ R+ SR G++V + + E Sbjct: 233 SGKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPELE 292 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 MR +IL + + K+ ++E +A+ + ++ REL+GA +++ F ++ Sbjct: 293 MRVAIL-----LKKAFIEKIELDESTAFFIAKYIRSNVRELEGALKRVLAYSRFTGHPIS 347 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L L+ +++ IE+IQ+ VA +Y I D+ S +RVR + RPRQVAM ++ Sbjct: 348 LDLAKEALKDLLAIQ-NRQISIENIQKTVADYYKIKVADMYSKKRVRAIARPRQVAMAIA 406 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T S P+IG FG RDHTTVLHA RK+ ++ +D + ++ L ++ Sbjct: 407 KELTQLSLPDIGEAFGGRDHTTVLHAHRKIVELRASDPGINRDYSTLIHIL 457 >gi|13474648|ref|NP_106217.1| chromosomal replication initiation protein [Mesorhizobium loti MAFF303099] gi|14025403|dbj|BAB52003.1| chromosomal replication initiator protein; DnaA [Mesorhizobium loti MAFF303099] Length = 514 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 275/496 (55%), Positives = 360/496 (72%), Gaps = 20/496 (4%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 + ++ + + E F V ++LK ++G +VY+SWF R+K IV +SVPT FL++ Sbjct: 20 IGANEMAVSSDAEQKFDRVKTQLKARLGAEVYSSWFGRMKVAEASKGIVRISVPTAFLRS 79 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALP--SVEKTASSPSITKLSPINTNISKS 141 WI YL+ I++L+++E + + +EI+VR+ S + +P+ T ++ Sbjct: 80 WINGHYLDLISELWKQEDADLLKIEIVVRTATRQGRSHAEPELAPARKMTRQTQTALAAG 139 Query: 142 PIILGKQTISPV---------------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 + G+ PV GSPLD R+ F +FIEG SNRVA AA+++AE Sbjct: 140 TVSPGRVERPPVPRPGAAVESEFRHNVLGSPLDPRYTFGSFIEGPSNRVAFAAAKAVAES 199 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 S + VR NPLF+HA+VGLGKTHLLQAIA S+K+ P RVVYLTAEYFMWRFA+AIR Sbjct: 200 QS---SAVRFNPLFLHATVGLGKTHLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIR 256 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 DN AL LK+ LR+IDLL+IDDMQFLQGK IQHEFCHL+N LLDSAKQVV AADRPPSELE Sbjct: 257 DNNALTLKEQLRDIDLLIIDDMQFLQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELE 316 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 SL+PR+RSRL GGV++ + D+ MR +LK RLA ++ +D L+I++E+L HVARTVT Sbjct: 317 SLEPRVRSRLNGGVALEMSAPDFAMRLGMLKLRLATARIDDASLDISDEILNHVARTVTG 376 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 SGREL+GAFNQL+FR SF P +T + DE+L H+ TGE K++RIEDIQR+VA+HYN+S+ Sbjct: 377 SGRELEGAFNQLLFRQSFEPQITIDRIDEILGHIYRTGEPKRVRIEDIQRIVARHYNVSK 436 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 +LLSNRR RT+V+PRQVAMYLSK+MTPRS PEIGRRFG RDHTTVLHAVRK+E + D Sbjct: 437 TELLSNRRTRTIVKPRQVAMYLSKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLSGND 496 Query: 487 ITLKKEVELLKRLISE 502 TL +E+ELL+RLI++ Sbjct: 497 NTLAQELELLRRLIND 512 >gi|256254092|ref|ZP_05459628.1| chromosomal replication initiation protein [Brucella ceti B1/94] Length = 540 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 287/500 (57%), Positives = 367/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SN VAL AA++ Sbjct: 161 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAAART 220 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 221 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 277 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 278 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 337 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 338 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 397 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 398 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 457 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 458 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 517 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 518 VGADTKLAQELELLKRLIND 537 >gi|307942712|ref|ZP_07658057.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] gi|307773508|gb|EFO32724.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] Length = 494 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 217/496 (43%), Positives = 311/496 (62%), Gaps = 33/496 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + V L+ ++G DV++SWF R+ V LSVPT FLK WI++ Y + Sbjct: 5 ETTGSEHWNRVKKSLRAELGDDVFSSWFARVDLEEHADGTVRLSVPTRFLKQWIQSHYND 64 Query: 92 TITKLFQEEHSRIQGVEILVRSVALP----SVEKTASSPSITKLSPINTNISKSPIILGK 147 + L++ E + +E+ VR P + + + S K P + +I Sbjct: 65 QLIGLWKRECEGVHRIELTVRGAIRPRQVAATPRQPALGSAKKALPASADIRTGGASAEP 124 Query: 148 QTISP---------------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 ++ + G+ LD ++ F TF+EG SN++ A Sbjct: 125 NRVAAAQAATAALGRGDSTSDNSKDVLQGAALDPKYTFDTFVEGESNQL-----ALAAAR 179 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 V NPLF+HASVGLGKTHL+QA+A + R +V+YLTAE+FM+RF SA++ Sbjct: 180 QVAAGGAVTFNPLFLHASVGLGKTHLMQAVA--AKARASGRKVLYLTAEHFMYRFVSALK 237 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 AL KD+LR IDLLLIDDMQFL GK +Q EFCH LN+L+D A+QV+ AADR PSEL+ Sbjct: 238 AQSALAFKDTLRTIDLLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRAPSELD 297 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 SLD R+RSRL GG+ V + D+ +R +IL +R+ +++K P + ++VL ++AR V + Sbjct: 298 SLDDRVRSRLSGGLVVGIHEPDFVLRRNILDSRVILARKTYPNFEVPDQVLDYIARHVAS 357 Query: 367 SGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 SGR+L+GA N+L+ + +T E+A+ L LV + E +K++IEDIQR+V+KHYN++ Sbjct: 358 SGRDLEGALNRLIAHNQLTNQPITQEMAELTLRDLVRSSEPRKVKIEDIQRVVSKHYNVT 417 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 + DLLS RR RT+VRPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRK+E++ + Sbjct: 418 KADLLSARRTRTIVRPRQIAMYLAKVMTPRSLPEIGRRFGNRDHTTVLHAVRKIEELAKG 477 Query: 486 DITLKKEVELLKRLIS 501 D L +E+ELLKR++ Sbjct: 478 DYALAQEIELLKRMLD 493 >gi|297564485|ref|YP_003683457.1| chromosomal replication initiator protein DnaA [Meiothermus silvanus DSM 9946] gi|296848934|gb|ADH61949.1| chromosomal replication initiator protein DnaA [Meiothermus silvanus DSM 9946] Length = 439 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 152/470 (32%), Positives = 260/470 (55%), Gaps = 34/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ ++I+ V ++ + Y +WF++++ V ++ L VPT+F WIK Y E Sbjct: 1 MSQQTIWQNVLDYVRQNINDVEYHTWFEKIRPLGVHGGVLELGVPTSFAGEWIKKHYAEL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + ++ E+ V +P+ +I +P+ Q +P Sbjct: 61 IQEALTRLGAQTPRFELKV-----------------VPGNPVQEDIFSAPV----QAPAP 99 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ ++ F F+ G +NR+A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 100 DPRSRLNPKYTFENFVVGQNNRLAHAAAMAVAESPGKAY-----NPLFIYGGVGLGKTHL 154 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ ++ R P+LR+ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ Sbjct: 155 MHAVGHSVAARFPSLRIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDIQFVA 214 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + + E Sbjct: 215 GKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPELET 274 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK E + I EEVL ++AR VT++ REL+GA +++ S + +T Sbjct: 275 RIAILK-----MNSEYRSMRIPEEVLEYIARQVTSNIRELEGALMRVIAYASLNGVEITK 329 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A LS + T +DI R VA HY + ++L R + VV PRQ+AM+L + Sbjct: 330 NVAARALSDVF-TARETDFSPDDILRAVADHYGLRTDELKGAGRRKEVVIPRQIAMFLIR 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S PEIG+ F RDHTTVL+A++KV+++ ++D ++++ + +K + Sbjct: 389 ELTQSSLPEIGQFFDGRDHTTVLYAIQKVQELADSDPSIQQTLRSIKERL 438 >gi|269958921|ref|YP_003328710.1| chromosomal replication initiation protein [Anaplasma centrale str. Israel] gi|269848752|gb|ACZ49396.1| chromosomal replication initiation protein [Anaplasma centrale str. Israel] Length = 471 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 172/488 (35%), Positives = 273/488 (55%), Gaps = 21/488 (4%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL 74 V+++E T V KR + ++ + V +L++ G +Y SW L + + V L Sbjct: 2 VDVSETTERCVVHKRQGQDGGDAAWRGVQKKLRDFYGSAIYDSWLSTLVYSGNENGRVVL 61 Query: 75 SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 VPT F+K WI YLE I K +Q+E + V+I V A + T S + S Sbjct: 62 LVPTRFIKEWILVHYLERILKYWQDESDAVYSVDICVSDGAGMQPQPTERSDGVVDGS-- 119 Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 ++ SPLD RF F F+ G N +A AA+ +AE + + Sbjct: 120 --------HVVVVGGTYDHLSSPLDPRFTFDNFVVGKPNELAFAAARRVAESSAPIPGS- 170 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLF++ VGLGKTHL+ AIA + ++ YL+AE FM+++ +A+R + K Sbjct: 171 --NPLFLYGGVGLGKTHLMHAIAWYILNSSVKRKIAYLSAEKFMYQYVTALRSKDIMLFK 228 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + R++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+ Sbjct: 229 EQFRSVDILMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEDRIK 288 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRL G+ + +E+R IL+ + E +++ EVL +A+ + ++ REL+G Sbjct: 289 SRLGWGLVADINETTFELRLGILQ-----LKTEKMGVHVPNEVLEFLAKNIKSNIRELEG 343 Query: 374 AFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A N++V S +T E A +LS L+ + + + IQ+ VA+ + I D+ S Sbjct: 344 ALNKVVAHSSLVGSSVTIESASGILSDLLRANH-RLVTVGMIQKKVAEFFGIKLEDMYSA 402 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR+R + RPRQVAMYL+K +T +S P+IG+ FG RDH TV+HAV+++EK +E D L + Sbjct: 403 RRLRALARPRQVAMYLAKRLTQKSLPDIGKSFGGRDHATVIHAVKQIEKFMEDDAKLADD 462 Query: 493 VELLKRLI 500 + LL R++ Sbjct: 463 INLLIRML 470 >gi|256158687|ref|ZP_05456570.1| chromosomal replication initiation protein [Brucella ceti M490/95/1] Length = 546 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 287/500 (57%), Positives = 367/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 47 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 106 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 107 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 166 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SN VAL AA++ Sbjct: 167 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAAART 226 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 227 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 283 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 284 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 343 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 344 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 403 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 404 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 463 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 464 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 523 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 524 VGADTKLAQELELLKRLIND 543 >gi|315640356|ref|ZP_07895472.1| DNA-directed DNA replication initiator protein [Enterococcus italicus DSM 15952] gi|315483892|gb|EFU74372.1| DNA-directed DNA replication initiator protein [Enterococcus italicus DSM 15952] Length = 446 Score = 461 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 239/469 (50%), Gaps = 29/469 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ++I+ + R K ++ Y +W K S N + + VP+ K + + I Sbjct: 3 SLDTIWKELQERYKKEMNFVSYNTWVDTAKPLSFQDNQLIIEVPSELHKNYWEKNLAGQI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + E+ + + + P S + Sbjct: 63 LETGYLLNGE----ELFPTFMTPEEADVYQKKKEPQAVQPEQAEEVPSKAM--------- 109 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 110 ----LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 160 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + ++++PN R+ Y+++E F F ++I+ ++ R +DLLL+DD+QFL Sbjct: 161 HAIGHQMLQKRPNARIKYVSSENFTNDFINSIKRKEMEEFRNEYRTVDLLLVDDIQFLVN 220 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E R Sbjct: 221 KEGTQEEFFNTFEELYLNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETR 280 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+ + E L I ++ L ++A + ++ REL+GA ++ + + +T Sbjct: 281 TAILRK-----KAEAENLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFAAMRNVDITTS 335 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L L +T ++ I IQ VAK+Y+I DL +RV+++V PRQ+AM+LS+ Sbjct: 336 LAAEALKALKSTHHLNQVSILHIQEEVAKYYHIPLKDLKGKKRVKSIVVPRQIAMFLSRE 395 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTV+HA K++ +L++D L+ EV +K++I Sbjct: 396 LTDNSLPKIGAEFGGKDHTTVIHAHEKIQHLLQSDAILQNEVAEIKQII 444 >gi|82701136|ref|YP_410702.1| chromosomal replication initiator protein DnaA [Nitrosospira multiformis ATCC 25196] gi|123740823|sp|Q2YD61|DNAA_NITMU RecName: Full=Chromosomal replication initiator protein DnaA gi|81251041|gb|ABB69852.1| DNA replication initiator protein [Nitrosospira multiformis] gi|82409201|gb|ABB73310.1| chromosomal replication initiator protein DnaA [Nitrosospira multiformis ATCC 25196] Length = 476 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 138/485 (28%), Positives = 240/485 (49%), Gaps = 33/485 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV---HLSVPTNFLKAWIKNRYLE 91 ++ + +N++ + +W + L+ + L P F+ W+K+ +L Sbjct: 4 PDTFWLACLEYFENELSAQQFNTWIKPLRLQLSDDSPEPALRLIAPNRFVLQWVKDNFLS 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTAS--------------SPSITKLSPINTN 137 IT++ + +R +++ + S + + Sbjct: 64 DITQMAENHFARPVQLQLELAGQIPASASPSTGRNNGTASHSITAVFDAPTESAQKAPKD 123 Query: 138 ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + KQ +P + L+ F F+TF+ G +N++A A +AE Y N Sbjct: 124 TKDTKDAKEKQEKNP---TRLNPSFTFNTFVTGKANQLARAGAIQVAERPGVAY-----N 175 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 P FI+ VGLGKTHL+QAI N +++ P +V Y+ +E ++ A + K Sbjct: 176 PFFIYGGVGLGKTHLIQAIGNFVVEQNPAAKVRYIHSEQYVSDVVRAYQHKAFDEFKRYY 235 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 ++DLLLIDD+QF GK Q EF + N+L+++ KQV+ D P E+ ++ R+ SR Sbjct: 236 HSLDLLLIDDIQFFGGKNRTQEEFFYAFNALIEAHKQVIITCDSYPKEIAGMEERLISRF 295 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G++V + + EMR +IL + + + ++E V +A+ + ++ REL+GA Sbjct: 296 GWGLTVAVEPPELEMRVAIL-----LKKALMEDIILDESVAFFIAKHIRSNVRELEGALK 350 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 ++V F LT ++A E L L+ +++ IE+IQ+ VA +Y I ++ S +R Sbjct: 351 RVVAYSRFTGHALTLDLAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRS 409 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R V RPRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ Sbjct: 410 RVVARPRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAVNRDFNT 469 Query: 496 LKRLI 500 L ++ Sbjct: 470 LLHIL 474 >gi|218437014|ref|YP_002375343.1| chromosomal replication initiation protein [Cyanothece sp. PCC 7424] gi|226735799|sp|B7K7Y7|DNAA_CYAP7 RecName: Full=Chromosomal replication initiator protein DnaA gi|218169742|gb|ACK68475.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7424] Length = 453 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 134/472 (28%), Positives = 243/472 (51%), Gaps = 31/472 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ + ++T V RL++++ + +W K + + + F+ ++ YL Sbjct: 1 MELSPQDLWTQVLERLQSRLPRPAFDTWIGTAKIEQLTPQYLVICAANPFILNHLQKNYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + +E ++I + S ++ + ++ P + PI Sbjct: 61 QIIADVVEEILG--YSIDIQLTSTQGENIAIVGET-QVSAYYPTLSGEHPKPIK------ 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ FS F+ GS+NR+A A ++AE NPLF+ VGLGKT Sbjct: 112 -------LNPKYTFSRFVVGSNNRLAHAATLAVAESPGR-----EFNPLFLCGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA+ ++ P+ +V Y++ E F +AIR + + ++ R D+LL+DD+QF Sbjct: 160 HLMQAIAHYRLQMYPDSKVFYVSTEQFTNDLITAIRQDSLQSFREHYRTADILLVDDIQF 219 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP ++ +L+ R+ SR G+ + + D Sbjct: 220 IEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKQIPTLEDRLISRFSMGLIADIQVPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + + EV+ ++A T++ REL+GA + + ++ I Sbjct: 280 ETRMAILQK-----KAEYENMRLPREVIEYIATHYTSNIRELEGALIRAI---TYISISG 331 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E L+ ++N + ++ E I ++A+ Y +S DL N R R + RQ+ MYL Sbjct: 332 LSMTVENLAPVLNPPVERGEVTPELILNIIAETYKVSVEDLKGNSRRREISLARQIGMYL 391 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + T S P IG FG +DHTTV+++ K+ ++ + D+ L + + L I Sbjct: 392 MRQHTDLSLPRIGEEFGGKDHTTVMYSYDKINQLQKKDLDLSQTLSQLSDRI 443 >gi|160895451|ref|YP_001561033.1| chromosomal replication initiation protein [Delftia acidovorans SPH-1] gi|160361035|gb|ABX32648.1| chromosomal replication initiator protein DnaA [Delftia acidovorans SPH-1] Length = 468 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 253/470 (53%), Gaps = 17/470 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ + +L ++ + +W + L H + V + V F WI+ +Y I+ Sbjct: 11 QGLWQVCVEQLGQEMPEQQFNTWIKPLTAHVAEDFSKVTVYVANRFKLDWIRAQYAGRIS 70 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS-PINTNISKSPIILGKQTISPV 153 + + + + +E+ + SV +T PS ++ S P T ++ P + + +PV Sbjct: 71 AMLESLYGQPVTLELAL--AQRESVVRTYVRPSSSERSAPPETIVTSVPTVTSEDAAAPV 128 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F + L++ F T +EG++NR+A +AA +A H Y NPLFI+ VGLGKTHL+ Sbjct: 129 FRTRLNAALTFETLVEGTANRMARSAAMHVAGSPGHLY-----NPLFIYGGVGLGKTHLV 183 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +P+ +V+Y+ AE F+ A + K+ ++DLLLIDD+QF Sbjct: 184 HAVGNKLLADKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFAN 243 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR Sbjct: 244 KDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMR 303 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL N+ E + EEV VA+ V ++ REL+GA +++ F ++ + Sbjct: 304 VAILINKARAENAE-----MPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQ 358 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K Sbjct: 359 LAREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKE 417 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 418 LTQKSLPEIGELFGGRDHTTVLHAVRKIAGERQQLTELNQQLHVLEQTLK 467 >gi|257875893|ref|ZP_05655546.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC20] gi|257810059|gb|EEV38879.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC20] Length = 445 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 251/469 (53%), Gaps = 30/469 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + +SI+ + K ++ P Y++W + S N + + VP++ K++ + I Sbjct: 3 SADSIWQDLQRSFKEELNPASYSAWIETANVLSFEKNQLLIEVPSDLHKSYWEKNLAAKI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E G E++ V + E ++PS + + Sbjct: 63 V----EMGFMKTGEELIPSFVTVEEAEALKTAPSTIQTAAEENERPP------------- 105 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 106 -KSILNEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 159 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + ++PN ++ Y+++E F F ++I+ N + ++ RN+DLLL+DD+QFL Sbjct: 160 HAIGHQMLLKRPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVN 219 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E R Sbjct: 220 KEGTQEEFFNTFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETR 279 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + E +L I ++ L ++A + ++ REL+GA ++ + +T Sbjct: 280 TAILRK-----KAEAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTS 334 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E + L ++ + ++ I IQ VAK+Y+I NDL +RV+ +V PRQ+AMYLS+ Sbjct: 335 LAAEAIKALKSSHGSTQVSILQIQEEVAKYYHIHVNDLKGKKRVKGIVVPRQIAMYLSRE 394 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTV+HA K++ ++ETD T+K E+ +K+++ Sbjct: 395 LTDSSLPKIGGEFGGKDHTTVIHAHEKIQHLVETDPTIKNEIAEIKQIL 443 >gi|325567641|ref|ZP_08144308.1| DNA-directed DNA replication initiator protein [Enterococcus casseliflavus ATCC 12755] gi|325159074|gb|EGC71220.1| DNA-directed DNA replication initiator protein [Enterococcus casseliflavus ATCC 12755] Length = 445 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 251/469 (53%), Gaps = 30/469 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + +SI+ + K ++ P Y++W + S N + + VP++ K++ + I Sbjct: 3 SADSIWQDLQRSFKEELNPASYSAWIETANVLSFEKNQLLIEVPSDLHKSYWEKNLAAKI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E G E++ V + E ++PS + + Sbjct: 63 V----EMGFMKTGEELIPSFVTVEEAEALKTAPSTIQTAAKENERPP------------- 105 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 106 -KSILNEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 159 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + ++PN ++ Y+++E F F ++I+ N + ++ RN+DLLL+DD+QFL Sbjct: 160 HAIGHQMLLKRPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVN 219 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E R Sbjct: 220 KEGTQEEFFNTFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETR 279 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + E +L I ++ L ++A + ++ REL+GA ++ + +T Sbjct: 280 TAILRK-----KAEAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTS 334 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E + L ++ + ++ I IQ VAK+Y+I NDL +RV+ +V PRQ+AMYLS+ Sbjct: 335 LAAEAIKALKSSHGSTQVSILQIQEEVAKYYHIHVNDLKGKKRVKGIVVPRQIAMYLSRE 394 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTV+HA K++ ++ETD T+K E+ +K+++ Sbjct: 395 LTDSSLPKIGGEFGGKDHTTVIHAHEKIQHLVETDPTIKNEIAEIKQIL 443 >gi|291529189|emb|CBK94775.1| chromosomal replication initiator protein DnaA [Eubacterium rectale M104/1] Length = 453 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 136/471 (28%), Positives = 256/471 (54%), Gaps = 35/471 (7%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL-KAWIKNRYLETITK 95 + + +K + + + +W + L+ ++ N +++ VP+ + ++I +Y + Sbjct: 8 WNEILQMVKEEHGLTDVSFNTWIKPLEVFAIDGNTLYILVPSEQMGLSYINKKYYLPLKV 67 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E ++ ++ A K +P + +P+ + Sbjct: 68 AIGEVTGIEYDIQFILPDQAQSLKFKNNDTPQLEPQTPVKGDH----------------- 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F TF+ G++NR A +A+ ++AE Y NPL+I+ GLGKTHL+ + Sbjct: 111 SNLNPNYTFDTFVVGNNNRFAHSASLAVAESPGEAY-----NPLYIYGGPGLGKTHLMHS 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQ 272 I + I + P+ +V+Y+T+E F +IR+ +D R +D+L+IDD+QF+ Sbjct: 166 IGHFIIDQNPDTKVLYVTSEEFTNEVIESIRNGNSSAMTKFRDKYRTVDVLMIDDIQFII 225 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L KQ++ +D+PP E+E+L+ RIRSR + G+ +G DYE Sbjct: 226 GKESTQEEFFHTFNTLQTQGKQIILTSDKPPKEMETLEERIRSRFEWGLMADIGTPDYET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + E +I++++L ++A ++++ REL+GA N+L+ H+ +T Sbjct: 286 RMAILRK-----KAETDNFDIDDDILNYIASNISSNIRELEGALNKLLAFHNLEHTHITM 340 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +IA+ LS+++ + +++ + I +V++H++IS + ++S R + RPRQ+AMYL K Sbjct: 341 DIAERELSNIITPDKPREITAQLIIEVVSEHFHISVDQMISKTRSSEIARPRQIAMYLCK 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S IG+ G RDH+T++H ++KV K E + + + +E +K+ I+ Sbjct: 401 TMTSDSLDVIGQLLGGRDHSTIIHGIKKVTKDYEENDSTRTLIETIKKKIN 451 >gi|291526546|emb|CBK92133.1| chromosomal replication initiator protein DnaA [Eubacterium rectale DSM 17629] Length = 453 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 136/471 (28%), Positives = 256/471 (54%), Gaps = 35/471 (7%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL-KAWIKNRYLETITK 95 + + +K + + + +W + L+ ++ N +++ VP+ + ++I +Y + Sbjct: 8 WNEILQMVKEEHGLTDVSFNTWIKPLEVFAIDGNTLYILVPSEQMGLSYINKKYYLPLKV 67 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E ++ ++ A K +P + +P+ + Sbjct: 68 AIGEVTGIEYDIQFILPDQAQSLKFKNNDTPQLEPQTPVKGDH----------------- 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F TF+ G++NR A +A+ ++AE Y NPL+I+ GLGKTHL+ + Sbjct: 111 SNLNPNYTFDTFVVGNNNRFAHSASLAVAESPGEAY-----NPLYIYGGPGLGKTHLMHS 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQ 272 I + I + P+ +V+Y+T+E F +IR+ +D R +D+L+IDD+QF+ Sbjct: 166 IGHFIIDQNPDTKVLYVTSEEFTNEVIESIRNGNSSAMTKFRDKYRTVDVLMIDDIQFII 225 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L KQ++ +D+PP E+E+L+ RIRSR + G+ +G DYE Sbjct: 226 GKESTQEEFFHTFNTLQTQGKQIILTSDKPPKEMETLEERIRSRFEWGLMADIGTPDYET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + E +I++++L ++A ++++ REL+GA N+L+ H+ +T Sbjct: 286 RMAILRK-----KAETDNFDIDDDILNYIASNISSNIRELEGALNKLLAFHNLEHTHITM 340 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +IA+ LS+++ + +++ + I +V++H++IS + ++S R + RPRQ+AMYL K Sbjct: 341 DIAERELSNIITPDKPREITAQLIIEVVSEHFHISVDQMISKTRSSDIARPRQIAMYLCK 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S IG+ G RDH+T++H ++KV K E + + + +E +K+ I+ Sbjct: 401 TMTSDSLDVIGQLLGGRDHSTIIHGIKKVTKDYEENDSTRTLIETIKKKIN 451 >gi|81251072|gb|ABB69875.1| DNA replication initiator protein [Nitrosospira sp. NRS527] Length = 475 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 133/480 (27%), Positives = 242/480 (50%), Gaps = 26/480 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + + ++ + +W + L+ + + + P F+ W+K+ +L Sbjct: 5 DTFWLSCLEHFEKELSAQQFNTWIKPLRLEVSHNTHESTAVVIAPNRFVMQWVKDNFLSR 64 Query: 93 ITKL----------FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 I ++ FQ + + V+ VR+V +++PS + +S Sbjct: 65 IEQMAGLHFPQAIRFQLKLADPISVKTTVRAVENTDAALPSATPSSNSAAFGVPVVSVQK 124 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + + S L+ F F+ F+ G +N++A A +AE Y NP FI+ Sbjct: 125 FAMDAREKREKNPSRLNPSFTFNNFVTGKANQLARAGAIQVAERPGTAY-----NPFFIY 179 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAI N ++ +V Y+ +E ++ A + + K ++D+ Sbjct: 180 GGVGLGKTHLIQAIGNFVLEHNSTAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLDV 239 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF + N+L+++ +QV+ D P E+ ++ R+ SR G++ Sbjct: 240 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWGLT 299 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + EMR +IL + + + ++E V +A+ + ++ REL+GA +++ Sbjct: 300 VAVEPPELEMRVAIL-----LKKALMENIVLDENVAFFIAKHIRSNVRELEGALKRVLAY 354 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 F L+ ++A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V R Sbjct: 355 SRFTGHSLSLDLAREALKDLLAVQ-NRQISIENIQKTVADYYKIKGAEMYSKKRSRIVAR 413 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM ++K +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L ++ Sbjct: 414 PRQMAMAMAKELTPLSLPDIGEAFGGRDHTTVLHGHRKIAELRASDPAINRDFNALLHIL 473 >gi|81251076|gb|ABB69878.1| DNA replication initiator protein [Nitrosospira sp. TYM9] Length = 475 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 134/480 (27%), Positives = 241/480 (50%), Gaps = 26/480 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + + ++ + +W + L+ + + + P F+ W+K+ +L Sbjct: 5 DTFWLSCLEHFEKELSAQQFNTWIKPLRLEVSHNTHESTAVVIAPNRFVMQWVKDNFLSR 64 Query: 93 ITKL----------FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 I ++ FQ + + V+ VR+V +++PS + +S Sbjct: 65 IEQMAGLHFPQAIRFQLKLADPISVKTTVRAVENTDATLPSATPSSNSAAFGVPVVSVQK 124 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + + S L+ F F+ F+ G +N++A A +AE Y NP FI+ Sbjct: 125 FAMDAREKRDKNPSRLNPSFTFNNFVTGKANQLARAGAIQVAERPGTAY-----NPFFIY 179 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAI N ++ +V Y +E ++ A + + K ++D+ Sbjct: 180 GGVGLGKTHLIQAIGNFVLEHNSTAKVRYTHSEQYVSGVVRAYQHKAFDDFKRYYHSLDV 239 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF + N+L+++ +QV+ D P E+ ++ R+ SR G++ Sbjct: 240 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWGLT 299 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + EMR +IL + + + ++E V +A+ + ++ REL+GA +++ Sbjct: 300 VAVEPPELEMRVAIL-----LKKALMENIVLDENVAFFIAKHIRSNVRELEGALKRVLAY 354 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 F L+ ++A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V R Sbjct: 355 SRFTGHSLSLDLAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRSRIVAR 413 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L ++ Sbjct: 414 PRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAINRDFNALLHIL 473 >gi|238922433|ref|YP_002935946.1| chromosomal replication initiation protein [Eubacterium rectale ATCC 33656] gi|238874105|gb|ACR73812.1| chromosomal replication initiation protein [Eubacterium rectale ATCC 33656] Length = 453 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 136/471 (28%), Positives = 257/471 (54%), Gaps = 35/471 (7%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL-KAWIKNRYLETITK 95 + + +K + + + +W + L+ ++ N +++ VP+ + ++I +Y + Sbjct: 8 WNEILQMVKEEHGLTDVSFNTWIKPLEVFAIDGNTLYILVPSEQMGLSYINKKYYLPLKV 67 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E ++ ++ A K +P + + +P+ + Sbjct: 68 AIGEVTGIEYDIQFILPDQAQSLKFKNNDTPQLEQQTPVKGDH----------------- 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ + F TF+ G++NR A +A+ ++AE Y NPL+I+ GLGKTHL+ + Sbjct: 111 SNLNPNYTFDTFVVGNNNRFAHSASLAVAESPGEAY-----NPLYIYGGPGLGKTHLMHS 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQ 272 I + I + P+ +V+Y+T+E F +IR+ +D R +D+L+IDD+QF+ Sbjct: 166 IGHFIIDQNPDTKVLYVTSEEFTNEVIESIRNGNSSAMTKFRDKYRTVDVLMIDDIQFII 225 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L KQ++ +D+PP E+E+L+ RIRSR + G+ +G DYE Sbjct: 226 GKESTQEEFFHTFNTLQTQGKQIILTSDKPPKEMETLEERIRSRFEWGLMADIGTPDYET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + E +I++++L ++A ++++ REL+GA N+L+ H+ +T Sbjct: 286 RMAILRK-----KAETDNFDIDDDILNYIASNISSNIRELEGALNKLLAFHNLEHTHITM 340 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +IA+ LS+++ + +++ + I +V++H++IS + ++S R + RPRQ+AMYL K Sbjct: 341 DIAERELSNIITPDKPREITAQLIIEVVSEHFHISVDQMISKTRSSEIARPRQIAMYLCK 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S IG+ G RDH+T++H ++KV K E + + + +E +K+ I+ Sbjct: 401 TMTSDSLDVIGQLLGGRDHSTIIHGIKKVTKDYEENDSTRTLIETIKKKIN 451 >gi|305667262|ref|YP_003863549.1| chromosomal replication initiation protein [Maribacter sp. HTCC2170] gi|88709309|gb|EAR01542.1| chromosomal replication initiation protein [Maribacter sp. HTCC2170] Length = 474 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 140/484 (28%), Positives = 245/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V S++ + +K+ + P + +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MSVTANSVWNNCLAFIKDNIQPQAFKTWFEPIKPVKLSENALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + +E + ++R + +PS + P + + N Sbjct: 61 KLLKVALTKELGETAKLVYIIRMENTYGNREPFTEKIPSSNRGNMGPQEMDVPIKSKNPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LRNPFVIPGIRNIKIESQLNPNYNFDNFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SILKN+L E P +++ +VA+ + T+ REL+GA L Sbjct: 297 GLSAELQNPDYETRISILKNKLYRDGVEMPN-----DIVDYVAKHIKTNIRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF +T E+A +++ V +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAQSSFNKKEVTIELAQQVVEKFVKN-TKREVSIDYIQKVVSDYFEMDVATLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + ETD +K +E L Sbjct: 411 IVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLAETDKQFRKYIEDLT 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|312878753|ref|ZP_07738553.1| chromosomal replication initiator protein DnaA [Aminomonas paucivorans DSM 12260] gi|310782044|gb|EFQ22442.1| chromosomal replication initiator protein DnaA [Aminomonas paucivorans DSM 12260] Length = 439 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 149/472 (31%), Positives = 252/472 (53%), Gaps = 35/472 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++++ V ++ K+ + P W + S+ ++ L VP F+K I++R+L Sbjct: 1 MEQDLKALWQDVLAQGKDTLPPGAADIWLKTCLPLSLEGGVLALDVPNVFIKEQIQSRFL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + +L QGVE+ V S P+ +K A + + + Sbjct: 61 VPLQELL-LSRGVAQGVELQVASEIRPNEQKRAEAAAQLVVP------------------ 101 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ +VF TF+ G SNR+A A+ + AE Y NPLFI VGLGKT Sbjct: 102 ----KNGLNPNYVFDTFVVGKSNRLAHAASLASAESPGVAY-----NPLFIWGGVGLGKT 152 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI + + P +VVY+++E F S+I++N + K R++D+LLIDD+QF Sbjct: 153 HLMHAIGHYVSENLPGAKVVYVSSEKFTNELISSIQNNRTQDFKAKYRSVDVLLIDDIQF 212 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L K Q EF H NSL D+ KQVV ++DRPP +++ ++ R+ SR + G+ + D Sbjct: 213 LADKESTQEEFFHTFNSLHDAKKQVVISSDRPPKDIQRVEERLVSRFEWGLVTDIQPPDL 272 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + E + E+V+ +A+ + ++ REL+GA N++V + Sbjct: 273 ETRVAILQK-----KAELRGYVVPEDVIFFLAQNIPSNIRELEGALNRVVACSELNGEPI 327 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E A E L ++ + I+ IQ +VA+ + I +L S++R + RQ+AMYL Sbjct: 328 STERAAEWLKDIIRNVLRGPVSIDLIQHLVAESFGIPVEELSSSKRTSDLALARQIAMYL 387 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ T S +IG F +DHTTVLHA RK++++L+ D+ +K V+ +++ + Sbjct: 388 SREYTEASLQQIGYGFNKKDHTTVLHACRKIDELLKNDLRVKSIVDNVRKKL 439 >gi|254713413|ref|ZP_05175224.1| chromosomal replication initiation protein [Brucella ceti M644/93/1] gi|254716230|ref|ZP_05178041.1| chromosomal replication initiation protein [Brucella ceti M13/05/1] Length = 540 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 287/500 (57%), Positives = 367/500 (73%), Gaps = 27/500 (5%) Query: 27 DKRCLEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 DK ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++ Sbjct: 41 DKSLMKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRS 100 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNI 138 WI N Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 101 WINNHYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMV 160 Query: 139 SKSPIILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 G Q++ V GSPLD R+ F TF++G+SNRV L AA++ Sbjct: 161 FPVGQSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVVLAAART 220 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 IAE G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA Sbjct: 221 IAEA---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFA 277 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPP 302 +AIRDN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR P Sbjct: 278 TAIRDNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAP 337 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 SELESLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVAR Sbjct: 338 SELESLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVAR 397 Query: 363 TVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 TVT SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HY Sbjct: 398 TVTGSGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHY 457 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S+ DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 458 NVSKQDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDL 517 Query: 483 LETDITLKKEVELLKRLISE 502 + D L +E+ELLKRLI++ Sbjct: 518 VGADTKLAQELELLKRLIND 537 >gi|307149946|ref|YP_003885330.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7822] gi|306980174|gb|ADN12055.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 7822] Length = 454 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 134/472 (28%), Positives = 242/472 (51%), Gaps = 30/472 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ + ++T V RL++++ + +W K + + + F+ ++ YL Sbjct: 1 MELSPQDLWTQVLERLQSRLSRPAFETWITTAKVEQLTEKYLVICAANPFILNHLQKNYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + +E I G I ++ A + +T++ +P + Sbjct: 61 QIIADVVEE----ILGYPIDIQLTAAQGENIAIIGETEMSAYHPSTSLGDNPKPIK---- 112 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ FS F+ G +NR+A A ++AE NPLF+ VGLGKT Sbjct: 113 -------LNPKYTFSRFVVGPNNRLAHAATLAVAESPGR-----EFNPLFLCGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA+ ++ P+ +V Y++ E F +AIR + + ++ R D+LL+DD+QF Sbjct: 161 HLMQAIAHYRLEMYPDSKVFYVSTEQFTNDLIAAIRQDSLQSFREHYRTADILLVDDIQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP ++ +L R+ SR G+ + + D Sbjct: 221 IEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKQIPTLQDRLISRFSMGLIADIQVPDL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + + EV+ ++A T++ REL+GA + + + I Sbjct: 281 ETRMAILQK-----KAEYENMRLPREVIEYIATHYTSNIRELEGALIRAITYIA---ISG 332 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E L+ ++N + ++ E I ++A+ +++S DL SN R R + RQ+ MYL Sbjct: 333 LSMTVENLAPVLNPPLERGEVSPEVILNIIAETFHVSVEDLKSNSRRREISLARQIGMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + T S P IG FG +DHTTV+++ K+ ++ + D+ L + + L I Sbjct: 393 MRQHTELSLPRIGEEFGGKDHTTVMYSYDKINQLQKKDLELSQTLSQLSDRI 444 >gi|226326146|ref|ZP_03801664.1| hypothetical protein COPCOM_03965 [Coprococcus comes ATCC 27758] gi|225205688|gb|EEG88042.1| hypothetical protein COPCOM_03965 [Coprococcus comes ATCC 27758] Length = 466 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 141/482 (29%), Positives = 254/482 (52%), Gaps = 29/482 (6%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 ++V E + + +LK + + + +W + L+ + + N ++L+V I+N+ Sbjct: 1 MDVIKEK-WEEIIQKLKVEYFLSNISFETWIRPLEVYEIRGNTLYLTVNFKASIEHIQNK 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 YL + E ++ + R + + + K +P+ K K+ Sbjct: 60 YLLPLKVCIAEVTGTEYQIKFIPRDLPREQQRRY-----LEKTAPV-----KEKTHKHKE 109 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + L+ ++ F TF+ G +N A A+ ++AE Y NPLF++ VGLG Sbjct: 110 VSPIAEKANLNPKYTFDTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLG 164 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC------ALNLKDSLRNIDL 262 KTHL+ +IA+ + R+P+ +V+Y+T+E F +AIR+ +D RN D+ Sbjct: 165 KTHLMHSIAHYILDREPSKKVLYVTSETFTNDLITAIRNGKTGNDLAMNAFRDKYRNNDV 224 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ GK Q EF H N L ++ KQ+V ++D+PP ++ +L+ R+R+R + G+ Sbjct: 225 LLIDDVQFIIGKESTQEEFFHTFNHLHNAGKQIVISSDKPPKDMTTLEARLRTRFEWGLI 284 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + DYE R +IL ++ + Q E + I +EV+ ++A + T+ REL+G+ N+L+ Sbjct: 285 ADISVPDYETRMAILYKKIELDQLE--RYQIPDEVIQYIAMNIKTNIRELEGSLNKLIAL 342 Query: 382 HSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + +A E L ++ ++ K+ E + +V+ H+N+S ++L +RR Sbjct: 343 YRIGGRKNFDVSLAAEALKDMIAPDDSHKVTPELVLDVVSDHFNVSVSELKGSRRNARTA 402 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RQ+ MYL + MT S IG G RDH+TV H V K+ + +E D TL+ +E++++ Sbjct: 403 GARQIVMYLCRQMTDASLQSIGDLLGGRDHSTVNHGVDKIARDVEKDETLRNTIEIIQKK 462 Query: 500 IS 501 IS Sbjct: 463 IS 464 >gi|114762142|ref|ZP_01441610.1| chromosomal replication initiation protein [Pelagibaca bermudensis HTCC2601] gi|114545166|gb|EAU48169.1| chromosomal replication initiation protein [Roseovarius sp. HTCC2601] Length = 451 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 166/461 (36%), Positives = 268/461 (58%), Gaps = 16/461 (3%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVL-HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 S+L + +G + Y +W + ++FH V + +VPTNF+ ++ + + + Sbjct: 2 QSQLSSTIGENNYKTWIEPMEFHGVEPGGVAVFNVPTNFIGTYVSQNFGDILLAKLSGMD 61 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 + ++ ++ V + +P + G+PLD R Sbjct: 62 TDVRRLKFQV-------ANADTRPAPAQQQPRPAAQAQPAPAAAAPANSDLLPGAPLDGR 114 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F F +F+ G N +A AA+ +AE V NPLF++ VGLGKTHL+ AIA Sbjct: 115 FTFDSFVVGKPNELAHAAAKRVAEG-----GQVTFNPLFLYGGVGLGKTHLMHAIAWDLR 169 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEF 280 +P+L V+YL+AE FM+RF A+R+ ++ K+ R++D+L++DD+QF+ GK Q EF Sbjct: 170 NNRPDLNVLYLSAEQFMYRFVQALRERRMMDFKELFRSVDVLMVDDVQFIAGKDSTQEEF 229 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L+D KQ++ +ADR P E++ L+ RIRSRLQ G+ V L DYE+R IL++++ Sbjct: 230 FHTFNALVDQNKQIIISADRAPDEIKDLENRIRSRLQSGLVVDLHPTDYELRLGILQSKV 289 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSH 399 +++ P L +++ +L +A ++T+ R L+GA +L S +T E+ + L+ Sbjct: 290 QNYREQYPALQLDDGILEFLAHRISTNVRVLEGALTRLFAFASLVGQPITMELTQDCLAD 349 Query: 400 LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 ++ +K+ IE+IQR VA+HY+I +DL+ +RVR RPRQVAMYL K +T RS PE Sbjct: 350 VLRAS-DRKISIEEIQRKVAEHYHIRLSDLIGPKRVRNFARPRQVAMYLCKQLTARSLPE 408 Query: 460 IGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IGRRFG RDHTTV+H V+++E++ D + +VELL+R + Sbjct: 409 IGRRFGGRDHTTVMHGVKRIEELRTQDSQIADDVELLRRAL 449 >gi|294085125|ref|YP_003551885.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664700|gb|ADE39801.1| ATPase [Candidatus Puniceispirillum marinum IMCC1322] Length = 510 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 161/476 (33%), Positives = 278/476 (58%), Gaps = 18/476 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ E+ + VS+R++ +G + SW + L+ S+ +N++ + ++ + + ++Y + Sbjct: 45 VDLEACWEKVSARMRIDLGDAAWRSWIKPLRVGSLHNNMLTIEADSSLARDRVNSQYADR 104 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK-----SPIILGK 147 + + E + ++ VE+ + E+ K S N +K S G Sbjct: 105 LRVISAAEFTGVKRVEVRLAVRPQSIAERAPRITDNDKGSAFAANSTKYDRAQSDSATGA 164 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + LD R+ F+ F+ G N +A A+ AE + V NPLF++ VGL Sbjct: 165 TPEKFDPLAGLDPRYTFANFVVGKPNELAFAVARRTAESEK-----VAFNPLFLYGGVGL 219 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AIA ++ P+ +V+YL+AE FM+RF A+R ++ K+ R++D+L+IDD Sbjct: 220 GKTHLMHAIAWHIREQAPSRKVMYLSAEKFMYRFVRALRFRDTMSFKEQFRSVDVLMIDD 279 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N+L++ +QV+ +AD+ P++LE ++ R+RSRL G+ + Sbjct: 280 VQFISGKDSTQEEFFHTFNALVEDGRQVIISADKSPTDLEGMEERLRSRLGWGMVADIHP 339 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE+R IL+ ++ E ++ I ++VL +A + ++ REL+GA N+++ Sbjct: 340 ADYELRLGILQ-----AKAERAQIQIPDKVLEFLAHKIVSNVRELEGALNRIMAHAMLVG 394 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T E A +LL+ L+ ++++ ++ IQ+ VA HY I +++ S RR R + RPRQVA Sbjct: 395 REITIESAADLLADLLRAS-SRQISVDAIQKRVAAHYGIRVSEMFSARRARNIARPRQVA 453 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL+K +T S+PEIGR+FG RDHTTV+HAV+ +E + +D L ++V+LL+ L+S Sbjct: 454 MYLTKNLTSLSYPEIGRQFGGRDHTTVMHAVKTIETLTLSDSRLGEDVDLLRSLLS 509 >gi|297537198|ref|YP_003672967.1| chromosomal replication initiator protein DnaA [Methylotenera sp. 301] gi|297256545|gb|ADI28390.1| chromosomal replication initiator protein DnaA [Methylotenera sp. 301] Length = 471 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 158/482 (32%), Positives = 253/482 (52%), Gaps = 27/482 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + SR + ++ + +W + L V N V L P F+ W+K R+L+ I + Sbjct: 2 ENFWPTCLSRFEQELSTQQFNTWIKPLHA-EVEGNAVRLVAPNRFVMQWVKERFLKKIEQ 60 Query: 96 LFQEEHSRIQGVEILV------RSVALPSVEKTASSPSIT-------KLSPINTNISKSP 142 + H ++ ++ S P+ ++T+ T K+S I+ IS S Sbjct: 61 FAHDLHLANIKIDFVISDSDQKNSAEKPAAKQTSKVEISTNINLMESKISQISQAISTSK 120 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 I K + S S L+S F F ++ G +N++A AA +AE Y NPLFI+ Sbjct: 121 NINKKTSESSKVSSGLNSAFNFDNYVTGRANQLARAAAIQVAENPGTAY-----NPLFIY 175 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHLLQAI N K P+ ++ YL AE ++ A K ++DL Sbjct: 176 GGVGLGKTHLLQAIGNELKKHNPDAKIRYLHAERYVTDVVKAYEHKAFDEFKRQYHSLDL 235 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF K Q EF + NSL+++ KQ+V D P E+ +D R+R+R G++ Sbjct: 236 LLIDDIQFFAKKTRTQEEFFYAFNSLIEAKKQIVITCDTYPKEIIDVDERLRTRFSWGLT 295 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + EMR +IL + + E LN+ E+V +A+ + +S REL+GA N+++ Sbjct: 296 VAVEPPELEMRVAIL-----LKKAEAVNLNLPEDVAFFIAKQIRSSVRELEGALNRIIAM 350 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 F + +A + L L+ +++ +E+IQ+ VA +Y I ++ S +R R R Sbjct: 351 AKFTGHSIDVHLAKDALRDLIAVR-GRQVTMENIQKTVADYYKIKVAEMYSKKRTRNFAR 409 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM LS+ +T SFPEIG FG R HTTV+HA +V+ + + D T +++ L ++I Sbjct: 410 PRQIAMALSRELTNHSFPEIGEAFGGRHHTTVMHACDEVDLLRQNDPTFTRDISFLVQVI 469 Query: 501 SE 502 + Sbjct: 470 RD 471 >gi|227511152|ref|ZP_03941201.1| DNA-directed DNA replication initiator protein [Lactobacillus buchneri ATCC 11577] gi|227085634|gb|EEI20946.1| DNA-directed DNA replication initiator protein [Lactobacillus buchneri ATCC 11577] Length = 469 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 238/471 (50%), Gaps = 24/471 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +S++ +S+ + Y +W + + + + LS+P+ + + K + Sbjct: 21 LDKDSLWQKLSTEFRKNTTDLTYDTWIKPVTPVDFDGSTLTLSLPSELHRDYWKEQLAPN 80 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + ++ S +K + + S +T S Sbjct: 81 LIEYAFVITKGNIEPKFILDSDIKKEAQKKEPAKA------------DSTADDQDETFSF 128 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ + F FI G N++A AA ++E Y NPLF + VGLGKTHL Sbjct: 129 SKETHLNPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLY-----NPLFFYGGVGLGKTHL 183 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N ++ P V Y+T+E F F +AI+ N + RN+DLL++DD+QF Sbjct: 184 MQAIGNKRLEDHPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFA 243 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L ++ KQ+V +DR P E+ L R+ SR G+ V + D E Sbjct: 244 QKEGTQEEFFHTFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLET 303 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK S+ + L I E L ++A + ++ REL+GA +++ +T Sbjct: 304 RIAILK-----SKAKLDNLTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKSEPITT 358 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++ E L L ++ I DIQ VA +++++ +DL +R++++V PRQ+AMYLS+ Sbjct: 359 DLVYEALKGLKLAKANNELSIMDIQNKVASYFHVTISDLKGKKRMKSIVIPRQIAMYLSR 418 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ FG +DHTTV+HA K+ ++++ D ++KE+ +K +S Sbjct: 419 EMTSNSLPKIGKEFGGKDHTTVIHACDKIAEVIKIDADIRKEISDIKTALS 469 >gi|222109226|ref|YP_002551490.1| chromosomal replication initiation protein [Acidovorax ebreus TPSY] gi|221728670|gb|ACM31490.1| chromosomal replication initiator protein DnaA [Acidovorax ebreus TPSY] Length = 473 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 143/469 (30%), Positives = 244/469 (52%), Gaps = 18/469 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ + +L + + +W + L + V L V F WI+ +Y I+ Sbjct: 19 QGLWQACAEQLAQDLPEQQFNTWIKPLVAQVAPDFSKVTLLVANRFKLDWIRAQYAGRIS 78 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L + + + +E+ + SV +T P+ + S P + + F Sbjct: 79 ALLEGLYGQPVTLELAL--AQRESVVRTYVRPTAPETPATGDAPSAHPT--ADEAPAGAF 134 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ F T +EG++NR+A +AA +A H Y NPLFI+ VGLGKTHL+ Sbjct: 135 RTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLY-----NPLFIYGGVGLGKTHLVH 189 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N ++ +P+ +V+Y+ AE F+ + + + K+ ++DLLLIDD+QF K Sbjct: 190 AVGNKLLQDRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANK 249 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR Sbjct: 250 DRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRV 309 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL N+ E + EEV VA+ V ++ REL+GA +++ F ++ ++ Sbjct: 310 AILINKARAEGSE-----MPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQL 364 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 365 AREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKEL 423 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 424 TQKSLPEIGELFGGRDHTTVLHAVRKIGAERQQLTELNQQLHVLEQTLK 472 >gi|257866276|ref|ZP_05645929.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC30] gi|257873208|ref|ZP_05652861.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC10] gi|257800234|gb|EEV29262.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC30] gi|257807372|gb|EEV36194.1| chromosomal replication initiator protein [Enterococcus casseliflavus EC10] Length = 445 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 251/469 (53%), Gaps = 30/469 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + +SI+ + K ++ P Y++W + S N + + VP++ K++ + I Sbjct: 3 SADSIWQDLQRSFKEELNPASYSAWIETANVLSFEKNQLLIEVPSDLHKSYWEKNLAAKI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E G E++ V + E ++PS + + Sbjct: 63 V----EMGFMKTGEELIPSFVTVEEAEALKTAPSTIQTAAEENERPP------------- 105 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 106 -KSILNEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 159 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + ++PN ++ Y+++E F F ++I+ N + ++ RN+DLLL+DD+QFL Sbjct: 160 HAIGHQMLLKRPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVN 219 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E R Sbjct: 220 KEGTQEEFFNTFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETR 279 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + E +L I ++ L ++A + ++ REL+GA ++ + +T Sbjct: 280 TAILRK-----KAEAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTS 334 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E + L ++ + ++ I IQ VAK+Y+I NDL +RV+ +V PRQ+AMYLS+ Sbjct: 335 LAAEAIKALKSSHGSTQVSILQIQEEVAKYYHIHVNDLKGKKRVKGIVVPRQIAMYLSRE 394 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTV+HA K++ ++ETD T+K E+ +K+++ Sbjct: 395 LTDSSLPKIGGEFGGKDHTTVIHAHEKIQHLVETDSTIKNEIAEIKQIL 443 >gi|227508127|ref|ZP_03938176.1| DNA-directed DNA replication initiator protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192356|gb|EEI72423.1| DNA-directed DNA replication initiator protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 469 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 238/471 (50%), Gaps = 24/471 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +S++ +S+ + Y +W + + + + LS+P+ + + K + Sbjct: 21 LNKDSLWQKLSTEFRKNTTDLTYDTWIKPVTPVDFDGSTLTLSLPSELHRDYWKEQLAPN 80 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + ++ S +K + + S +T S Sbjct: 81 LIEYAFVITKGNIEPKFILDSDIKKEAQKKEPAKA------------DSTADDQDETFSF 128 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ + F FI G N++A AA ++E Y NPLF + VGLGKTHL Sbjct: 129 SKETHLNPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLY-----NPLFFYGGVGLGKTHL 183 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N ++ P V Y+T+E F F +AI+ N + RN+DLL++DD+QF Sbjct: 184 MQAIGNKRLEDHPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFA 243 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L ++ KQ+V +DR P E+ L R+ SR G+ V + D E Sbjct: 244 QKEGTQEEFFHTFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLET 303 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK S+ + L I E L ++A + ++ REL+GA +++ +T Sbjct: 304 RIAILK-----SKAKLDNLTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKNEPITT 358 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++ E L L ++ I DIQ VA +++++ +DL +R++++V PRQ+AMYLS+ Sbjct: 359 DLVYEALKGLKLAKANNELSIMDIQNKVASYFHVTISDLKGKKRMKSIVIPRQIAMYLSR 418 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ FG +DHTTV+HA K+ ++++ D ++KE+ +K +S Sbjct: 419 EMTSNSLPKIGKEFGGKDHTTVIHACDKIAEVIKIDADIRKEISDIKTALS 469 >gi|189499001|ref|YP_001958471.1| chromosomal replication initiation protein [Chlorobium phaeobacteroides BS1] gi|189494442|gb|ACE02990.1| chromosomal replication initiator protein DnaA [Chlorobium phaeobacteroides BS1] Length = 491 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 135/492 (27%), Positives = 242/492 (49%), Gaps = 21/492 (4%) Query: 17 IAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV 76 AE+T + V K + ++++ L+N++ + +WF + N + + V Sbjct: 10 TAEQTTDATVTKG----SAQTVWAACLDVLRNKLNNQAFKTWFTPITPLLFSDNELTIEV 65 Query: 77 PTNFLKAWIKNRYLETITKLFQEEH---SRIQGVEILVRSVALPSVEKTASS--PSITKL 131 P+ F WI+ Y + + +E ++ ++ +S + P + P Sbjct: 66 PSQFFYEWIEENYSNQLKQALKETLGAEGKLMYSIVMDKSQSQPVTIELPHQNIPKADSG 125 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 I ++ S F S L+ ++ F T I G N +A A++S+++ Sbjct: 126 DEICSDGHTSSDKAFVTRHRTKFESHLNPKYTFDTLIRGDCNSLAFAASKSVSQNPGQN- 184 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPL I+ VGLGKTH++QA+ N + + V+Y+++E F F +AI++ Sbjct: 185 ---AFNPLVIYGGVGLGKTHMMQAVGNHVRESHRSEYVLYVSSEKFAIDFVNAIQNGKIQ 241 Query: 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 R +D+L+IDD+QF GK Q E H+ N+L S KQ++ ++DRP E+ ++ Sbjct: 242 EFSSFYRKMDVLIIDDIQFFAGKEKTQEEIFHIFNTLHQSNKQIILSSDRPIKEIRGIEE 301 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+ SR G+S + DYE R +I++ S+ E + ++E V+ +A VT + RE Sbjct: 302 RLISRFNWGLSADIQPPDYETRKAIIQ-----SKLEQSGVTLDESVVEFIATNVTQNVRE 356 Query: 371 LDGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 ++G +L+ HS F + + L ++ +KK+ +E I++ + +++I+ NDL Sbjct: 357 IEGCIVKLLASHSLFNQEIDLQFTKMTLKDIIRIQ-SKKLSLETIEKAICTYFSITPNDL 415 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 + + + RQVAMYLSK +T S IG FG RDH+TV+H + +E Sbjct: 416 KGKSKKKEIAAGRQVAMYLSKELTGSSLKTIGLHFGGRDHSTVIHGHNTIRNKVENSAET 475 Query: 490 KKEVELLKRLIS 501 + ++E LK+ I Sbjct: 476 RGQIEELKKRID 487 >gi|121596425|ref|YP_988321.1| chromosomal replication initiation protein [Acidovorax sp. JS42] gi|120608505|gb|ABM44245.1| chromosomal replication initiator protein DnaA [Acidovorax sp. JS42] Length = 473 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 143/469 (30%), Positives = 243/469 (51%), Gaps = 18/469 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ + +L + + +W + L + V L V F WI+ +Y I+ Sbjct: 19 QGLWQACAEQLAQDLPEQQFNTWIKPLVAQVAPDFSKVTLLVANRFKLDWIRAQYAGRIS 78 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L + + + +E+ + SV +T P+ S P + + F Sbjct: 79 ALLEGLYGQPVTLELAL--AQRESVVRTYVRPTAPDTPATGDAPSAHPT--ADEAPAGAF 134 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ F T +EG++NR+A +AA +A H Y NPLFI+ VGLGKTHL+ Sbjct: 135 RTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLY-----NPLFIYGGVGLGKTHLVH 189 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N ++ +P+ +V+Y+ AE F+ + + + K+ ++DLLLIDD+QF K Sbjct: 190 AVGNKLLQDRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQFFANK 249 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR Sbjct: 250 DRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRV 309 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL N+ E + EEV VA+ V ++ REL+GA +++ F ++ ++ Sbjct: 310 AILINKARAEGSE-----MPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQL 364 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 365 AREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKEL 423 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 424 TQKSLPEIGELFGGRDHTTVLHAVRKIGAERQQLTELNQQLHVLEQTLK 472 >gi|163854305|ref|YP_001628603.1| chromosomal replication initiation protein [Bordetella petrii DSM 12804] gi|226735783|sp|A9HVA1|DNAA_BORPD RecName: Full=Chromosomal replication initiator protein DnaA gi|163258033|emb|CAP40332.1| chromosomal replication initiator protein [Bordetella petrii] Length = 478 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 141/487 (28%), Positives = 231/487 (47%), Gaps = 32/487 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETI 93 + + SRL+ ++ P ++W + L + L V P F W++ + I Sbjct: 2 KEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDETQAVLRVAAPNRFKLDWVRKNFSHQI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L E R V + + +P++ ++ +P Q Sbjct: 62 EALAAEWFQRPVQVAFELPAGGAGPRMPAVPRTPAGAPAPVSAGMAATPAGAPAQAPVAP 121 Query: 154 F----------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 S L++ F F+ G +N++A AA +AE Y N Sbjct: 122 AAVAAAVQADAAGVVYERSRLNTDLTFDNFVTGKANQLARAAALQVAENPGISY-----N 176 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLF++ VGLGKTHL+ AI NA + +RV Y+ A+ ++ A + + K Sbjct: 177 PLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYY 236 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 ++DLLLIDD+QF GK Q EF + +++ KQ++ +D P EL +D R+ SR Sbjct: 237 HSLDLLLIDDIQFFSGKSRTQEEFFYAFEAMVAQRKQIIITSDTYPKELAGIDSRLISRF 296 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G++V + + EMR +IL + + E + + EEV +A+ + ++ REL+GA Sbjct: 297 DSGLTVAIEPPELEMRVAIL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALR 351 Query: 377 QLVFRHSFAP--ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 +++ F +L+ ++ E L L++ ++ +E+IQ+ VA Y I D+ S RR Sbjct: 352 KVLAYARFHGRDVLSVDVCKEALKDLLSVSNG-QITVENIQKTVADFYKIKVADMYSKRR 410 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 + PRQVAMYL+K +T +S PEIG FG RDHTTVLHAVRK+ L + Sbjct: 411 PANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQAELNHTLH 470 Query: 495 LLKRLIS 501 +L++ + Sbjct: 471 VLEQTLK 477 >gi|120552945|ref|YP_957296.1| chromosomal replication initiation protein [Marinobacter aquaeolei VT8] gi|166214680|sp|A1TWJ0|DNAA_MARAV RecName: Full=Chromosomal replication initiator protein DnaA gi|120322794|gb|ABM17109.1| chromosomal replication initiator protein DnaA [Marinobacter aquaeolei VT8] Length = 487 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 154/497 (30%), Positives = 248/497 (49%), Gaps = 42/497 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ L+++ + +W + L+ + L P F+ W+ +YL I Sbjct: 2 PNSMWHQCLEVLRDEFPAQQFNTWLRPLQ-SDHREGQLMLFAPNRFVMDWVNEKYLRRIE 60 Query: 95 KLFQEEHSR------------IQGVEILVRSVALPSVEKTASSPS---------ITKLSP 133 ++ ++ + + + +VRS P V + + ++ Sbjct: 61 EVLKDLNGGQAPRVMMKVGSAPKPTDPVVRSEVAPPVRVSEETEQTVTEEERSVAATVAD 120 Query: 134 INTNISKSPIILGKQTISPV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 +P + PV S L+ F F TF+EG SN++A A+ +AE Sbjct: 121 SAPRAMSAPAPKAQAERRPVQVEGDIKHQSFLNETFTFDTFVEGKSNQLARAASMQVAEN 180 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLF++ VGLGKTHL+ AI N ++R P +V YL +E F+ A++ Sbjct: 181 PGGAY-----NPLFLYGGVGLGKTHLMHAIGNEIVRRNPRAKVAYLRSERFVADMVKALQ 235 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ DR P E+ Sbjct: 236 LNAINEFKRYYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVIVTCDRFPKEI 295 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ++ R++SR G++V + + E R +IL + + E + ++ E +A+ + Sbjct: 296 SDMEERLKSRFGWGLTVMVEPPELETRVAIL-----MKKAEQANVKLSSEAAFFIAQKIR 350 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA ++ F +T E L L+ K++ I++IQR VA++Y I Sbjct: 351 SNVRELEGALRLVIANAHFTGSEITPPFIRESLKDLLAL-HEKQVSIDNIQRTVAEYYKI 409 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 DLLS RR RTV RPRQVAM L+K +T S PEIG FG RDHTTVLHA +K+ ++ E Sbjct: 410 KVADLLSKRRTRTVTRPRQVAMSLAKELTNHSLPEIGDAFGGRDHTTVLHACKKIVELQE 469 Query: 485 TDITLKKEVELLKRLIS 501 TD ++++ + RL++ Sbjct: 470 TDPGIREDYQNFMRLLT 486 >gi|328949541|ref|YP_004366876.1| Chromosomal replication initiator protein dnaA [Marinithermus hydrothermalis DSM 14884] gi|328449865|gb|AEB10766.1| Chromosomal replication initiator protein dnaA [Marinithermus hydrothermalis DSM 14884] Length = 448 Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 154/470 (32%), Positives = 260/470 (55%), Gaps = 34/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + ESI+ V S ++N + Y +WF+R++ + ++ L VPT+F WIK Y + Sbjct: 10 LTQESIWQNVLSYIRNNITEVEYHTWFERIRPLGIQGGVLELGVPTSFAGEWIKKHYADL 69 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + E+ V +P+ +I + Q+ + Sbjct: 70 IQEALLHLGATSPRFELKV-----------------VPGTPVQEDI----FSVSTQSQAR 108 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F F+ G++N +A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 109 ENRHKLNPKYTFENFVVGANNNMAHAAALAVAESPGRAY-----NPLFIYGGVGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + +R P+L++ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ Sbjct: 164 MHAVGHYVAQRFPHLKIEYVSTETFTNELINAIREDKMSEFRERYRSVDLLLVDDIQFIA 223 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + + E Sbjct: 224 GKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLESRLRSRFEWGLITDIQPPELET 283 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK E ++I EEVL ++AR +T++ REL+GA +L+ S + +T Sbjct: 284 RIAILK-----MNAEYRGISIPEEVLEYIARQITSNIRELEGALMRLIAYASLNGVEITK 338 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A LS + T + + + EDI R+VA HY + +L R + VV PRQVAMYL + Sbjct: 339 QVAARALSDVF-TPKEAEYKAEDILRVVAAHYGVRPEELRGRGRSKEVVLPRQVAMYLIR 397 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S PEIG+ F RDHTTVL+A++KV+++ E D +++ + L+ + Sbjct: 398 ELTGASLPEIGQFFQGRDHTTVLYAIQKVQELREQDPAMRQLLRELQEQL 447 >gi|331700396|ref|YP_004397355.1| chromosomal replication initiator protein DnaA [Lactobacillus buchneri NRRL B-30929] gi|329127739|gb|AEB72292.1| Chromosomal replication initiator protein dnaA [Lactobacillus buchneri NRRL B-30929] Length = 449 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 146/472 (30%), Positives = 245/472 (51%), Gaps = 27/472 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL-E 91 ++ +S++ +S + ++ Y +W + +K S + + LS+P+ + + K + Sbjct: 2 LDKDSLWQKLSEQFRSNTTDLTYDTWIKPVKPISFDGSTLTLSLPSELHRDYWKEQLAPN 61 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I F I+ IL V + EK + + + SK Sbjct: 62 LIEYAFVITKGNIEPKFILDSDVNKEAQEKPVDNNASQDQDGDEFSFSKE---------- 111 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ + F FI G N++A AA ++E Y NPLF + VGLGKTH Sbjct: 112 ----NHLNPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLY-----NPLFFYGGVGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI N ++ P V Y+T+E F F +AI+ N + R++D+L++DD+QF Sbjct: 163 LMQAIGNKRLEDHPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRDVDILMVDDIQFF 222 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N L ++ KQ+V +DR P E+ L R+ SR G+ V + D E Sbjct: 223 AQKEGTQEEFFHTFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILT 389 R +ILKN + + L I + L ++A + ++ REL+GA +++ +T Sbjct: 283 TRIAILKN-----KAKLDNLVIPNDTLSYIAGQIDSNVRELEGALSRVQAYSKLKDEPIT 337 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++ E L L + + +++ I DIQ VA +++IS NDL +R++++V PRQ+AMYLS Sbjct: 338 TDLVYEALRGLKLSQDNRQLSIVDIQNKVASYFHISINDLKGKKRMKSIVMPRQIAMYLS 397 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT S P+IG+ FG +DHTTV+HA K+ ++++ D L+KE+ +K ++ Sbjct: 398 REMTSNSLPKIGKEFGGKDHTTVIHACDKIAEIIKLDADLRKEIADIKSALN 449 >gi|30248032|ref|NP_840102.1| dnaA; chromosomal replication initiator protein [Nitrosomonas europaea ATCC 19718] gi|38257436|sp|Q82Y84|DNAA_NITEU RecName: Full=Chromosomal replication initiator protein DnaA gi|30179917|emb|CAD83912.1| dnaA; chromosomal replication initiator protein [Nitrosomonas europaea ATCC 19718] Length = 459 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 143/472 (30%), Positives = 243/472 (51%), Gaps = 24/472 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLET 92 E+ + + ++ + +W + LK N + L P F+ WIK+ ++ Sbjct: 4 IETFWHFCLKHFRQELNGQQFNTWIKPLKLEVCPDEKNTLILIAPNRFVLQWIKDNFVTR 63 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ Q+ + + +R E S + S K P Q ++ Sbjct: 64 IDEMAQDHFNERISFRLELR-------EPAESEAQTVRTSAQKNREDKKPAAEKTQGVTS 116 Query: 153 VFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +P L++ F F F+ G +N++A A +AE Y NPLFI+ VGLGKT Sbjct: 117 RKTNPSQLNASFTFDAFVTGKANQLARAGAIQVAERPGIAY-----NPLFIYGGVGLGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI N ++ ++ Y+ AE ++ SA + K ++DLLL+DD+QF Sbjct: 172 HLMQAIGNYVLELDAGAKIRYVHAEKYVSDVVSAYQHKSFDKFKLYYHSLDLLLVDDVQF 231 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L+++ KQV+ +D P E+ L+ R+ SR G++V + + Sbjct: 232 FSGKNRTQEEFFYAFNALIEAHKQVIITSDCYPKEISGLEERLVSRFGWGLTVAIEPPEL 291 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 EMR +IL + + K+ ++E +A+ + ++ REL+GA +++ F + Sbjct: 292 EMRVAIL-----LKKALAEKIELDENTAFFIAKYIRSNVRELEGALKRVLAFSRFTGHSI 346 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L L+ +++ IE+IQ+ VA +Y I D+ S +RVRT+VRPRQVAM + Sbjct: 347 SLDLAKEALKDLLAIQ-NRQISIENIQKTVADYYKIKVADMYSKKRVRTIVRPRQVAMAI 405 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K +T S P+IG FG RDHTTVLHA RK+ ++ +D + ++ L ++ Sbjct: 406 AKELTQLSLPDIGEAFGGRDHTTVLHAHRKIIELRTSDPGINRDFNALMHIL 457 >gi|227523339|ref|ZP_03953388.1| DNA-directed DNA replication initiator protein [Lactobacillus hilgardii ATCC 8290] gi|227089530|gb|EEI24842.1| DNA-directed DNA replication initiator protein [Lactobacillus hilgardii ATCC 8290] Length = 469 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 238/471 (50%), Gaps = 24/471 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +S++ +S+ + Y +W + + + + LS+P+ + + K + Sbjct: 21 LDKDSLWQKLSTEFRKNTTDLTYDTWIKPVTPVDFDGSTLTLSLPSELHRDYWKEQLAPN 80 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + ++ S +K + + S +T S Sbjct: 81 LIEYAFVITKGNIEPKFILDSDIKKEAQKKEPAKA------------DSTADDQDETFSF 128 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ + F FI G N++A AA ++E Y NPLF + VGLGKTHL Sbjct: 129 SKETHLNPNYTFDNFIIGKGNQMAHAAALIVSEEPGKLY-----NPLFFYGGVGLGKTHL 183 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI N ++ P V Y+T+E F F +AI+ N + RN+DLL++DD+QF Sbjct: 184 MQAIGNKRLEDHPETNVKYVTSEAFTNDFINAIQTNRTEEFRREYRNVDLLMVDDIQFFA 243 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF H N L ++ KQ+V +DR P E+ L R+ SR G+ V + D E Sbjct: 244 QKEGTQEEFFHTFNDLYNNDKQIVLTSDRVPQEIPKLQERLVSRFAWGLPVDITPPDLET 303 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK S+ + L I E L ++A + ++ REL+GA +++ +T Sbjct: 304 RIAILK-----SKAKLDNLTIPNETLSYIAGQINSNVRELEGALSRVQAYSKLKNEPITT 358 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++ E L L ++ I DIQ VA +++++ +DL +R++++V PRQ+AMYLS+ Sbjct: 359 DLVYEALKGLKLAKANNELSIMDIQNKVASYFHVTISDLKGKKRMKSIVIPRQIAMYLSR 418 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ FG +DHTTV+HA K+ ++++ D ++KE+ +K +S Sbjct: 419 EMTSNSLPKIGKEFGGKDHTTVIHACDKIAEVIKIDADIRKEISDIKTALS 469 >gi|255020209|ref|ZP_05292278.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus caldus ATCC 51756] gi|254970351|gb|EET27844.1| Chromosomal replication initiator protein DnaA [Acidithiobacillus caldus ATCC 51756] Length = 450 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 259/470 (55%), Gaps = 34/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + ++++ + +L+ P + +W + L+ + + + L P F++ W++ R E Sbjct: 11 QDGAALWSALCVQLELVTSPQQFNTWLRPLR-GELQGHELRLLAPNPFVRDWVRERMAEL 69 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + Q G E++ ++++ A++ + + I S +P Sbjct: 70 VKEQLQRIAP---GFELVF------ALDEEAAAATSAPTASIAPERSSAP---------- 110 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G L+ F F +++EG SN++AL AA+ +A+ Y NPL+I+ VGLGKTHL Sbjct: 111 -GGHRLNPAFNFQSYVEGKSNQLALAAARQVAQHPGKSY-----NPLYIYGGVGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QA+ N ++RQP +V+Y+++E F+ +++ N + K R +D LLIDD+QF Sbjct: 165 MQAVGNDILQRQPEAKVLYISSEGFIMDMVRSLQHNTINDFKQRYRKLDALLIDDIQFFA 224 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D +Q++ DR P E+E L+ R++SR G++V + HD E Sbjct: 225 GKDRTQEEFFHTFNALFDGGRQIIITCDRYPKEVEGLEERLQSRFGWGLTVAIQPHDLET 284 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R +I+ + + ED + + EEV +A + + REL+GA +++ +F + Sbjct: 285 RMAIV-----LCKAEDHGIQLPEEVAFFIAEKIRSHVRELEGALRRVIAHVNFTHKPYSV 339 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A E L L++ + + +E+IQ++VA +Y+I +++ S RR R V RPRQ+AM L+K Sbjct: 340 ESAKEALRDLIDVQ-KRMVSLENIQKVVADYYHIRASEMQSKRRNRNVARPRQMAMALTK 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S PEIG FG RDHTTVLHA R++EK+ ++++ L R++ Sbjct: 399 ELTRHSLPEIGEAFGGRDHTTVLHACRQIEKLRRESAQIEEDYRNLIRIL 448 >gi|319779750|ref|YP_004139226.1| chromosomal replication initiator protein DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165638|gb|ADV09176.1| chromosomal replication initiator protein DnaA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 515 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 274/491 (55%), Positives = 357/491 (72%), Gaps = 21/491 (4%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + + E F V ++LK ++G +VY+SWF R+K IV +SVPT FL++WI Y Sbjct: 26 AVSSDAEQKFDRVKTQLKARLGTEVYSSWFGRMKVAEASKGIVRISVPTAFLRSWINGHY 85 Query: 90 LETITKLFQEEHSRIQGVEILVRSVAL---------------PSVEKTASSPSITKLSPI 134 L+ I++L+++E + ++I+VR+ +T ++ + +SP Sbjct: 86 LDLISELWKQEDPDLLKIDIVVRTATRQGRAQAEPEVTPARSKVTRQTQTALAAGTVSPS 145 Query: 135 NTNISKSP---IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 + +P + + V GSPLD R+ F +FIEG SNRVA AA+++AE S Sbjct: 146 RVERASTPRPGTPIESEFRHNVLGSPLDPRYTFGSFIEGPSNRVAFAAAKAVAESQS--- 202 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 + VR NPLF+HA+VGLGKTHLLQAIA S+K+ P RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 203 SAVRFNPLFLHATVGLGKTHLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNAL 262 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 LK+ LR+IDLL+IDDMQFLQGK IQHEFCHL+N LLDSAKQVV AADRPPSELESL+PR Sbjct: 263 TLKEQLRDIDLLIIDDMQFLQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPR 322 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSRL GGV++ + D+ MR +LK RLA ++ +D L+I+EE+L HVARTVT SGREL Sbjct: 323 VRSRLNGGVALEMSAPDFAMRLGMLKLRLATARSDDASLDISEEILNHVARTVTGSGREL 382 Query: 372 DGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 +GAFNQL+FR SF P +T + DE+L H+ TGE K++RIEDIQR+VA+HYN+S+ +LLS Sbjct: 383 EGAFNQLLFRQSFEPQITIDRIDEILGHIYRTGEPKRVRIEDIQRIVARHYNVSKTELLS 442 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 NRR RT+V+PRQVAMYLSK+MTPRS PEIGRRFG RDHTTVLHAVRK+E + D TL + Sbjct: 443 NRRTRTIVKPRQVAMYLSKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLSGNDNTLAQ 502 Query: 492 EVELLKRLISE 502 E+ELL+RLI++ Sbjct: 503 ELELLRRLIND 513 >gi|38257742|sp|Q98BG9|DNAA_RHILO RecName: Full=Chromosomal replication initiator protein DnaA Length = 490 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 275/490 (56%), Positives = 357/490 (72%), Gaps = 20/490 (4%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + + E F V ++LK ++G +VY+SWF R+K IV +SVPT FL++WI Y Sbjct: 2 AVSSDAEQKFDRVKTQLKARLGAEVYSSWFGRMKVAEASKGIVRISVPTAFLRSWINGHY 61 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALP--SVEKTASSPSITKLSPINTNISKSPIILGK 147 L+ I++L+++E + + +EI+VR+ S + +P+ T ++ + G+ Sbjct: 62 LDLISELWKQEDADLLKIEIVVRTATRQGRSHAEPELAPARKMTRQTQTALAAGTVSPGR 121 Query: 148 QTISPV---------------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 PV GSPLD R+ F +FIEG SNRVA AA+++AE S + Sbjct: 122 VERPPVPRPGAAVESEFRHNVLGSPLDPRYTFGSFIEGPSNRVAFAAAKAVAESQS---S 178 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 VR NPLF+HA+VGLGKTHLLQAIA S+K+ P RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 179 AVRFNPLFLHATVGLGKTHLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALT 238 Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 LK+ LR+IDLL+IDDMQFLQGK IQHEFCHL+N LLDSAKQVV AADRPPSELESL+PR+ Sbjct: 239 LKEQLRDIDLLIIDDMQFLQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRV 298 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 RSRL GGV++ + D+ MR +LK RLA ++ +D L+I++E+L HVARTVT SGREL+ Sbjct: 299 RSRLNGGVALEMSAPDFAMRLGMLKLRLATARIDDASLDISDEILNHVARTVTGSGRELE 358 Query: 373 GAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 GAFNQL+FR SF P +T + DE+L H+ TGE K++RIEDIQR+VA+HYN+S+ +LLSN Sbjct: 359 GAFNQLLFRQSFEPQITIDRIDEILGHIYRTGEPKRVRIEDIQRIVARHYNVSKTELLSN 418 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR RT+V+PRQVAMYLSK+MTPRS PEIGRRFG RDHTTVLHAVRK+E + D TL +E Sbjct: 419 RRTRTIVKPRQVAMYLSKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLSGNDNTLAQE 478 Query: 493 VELLKRLISE 502 +ELL+RLI++ Sbjct: 479 LELLRRLIND 488 >gi|332709094|ref|ZP_08429063.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula 3L] gi|332352145|gb|EGJ31716.1| chromosomal replication initiator protein DnaA [Lyngbya majuscula 3L] Length = 460 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 246/473 (52%), Gaps = 24/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ E ++ V RLK Q+ + +W + + +N + + P F + W++ Y+ Sbjct: 1 MKISPEELWIQVLERLKLQLSQPTFETWLKTTSAQQLDNNCLLIRTPNPFSRNWLQKYYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +TI + ++ + + + + S+ A + P+ TN S++ + Sbjct: 61 KTIADVVEDILGQPVEINFITATGDNNSMTADAD---FSWSFPVATNHSENTFKNQPR-- 115 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ + VFS F+ G +NR+A A+ ++ E NPLF+ VGLGKT Sbjct: 116 ----RAKLNPKHVFSRFVVGPNNRMAHAASLAVGEYPGR-----EFNPLFLCGGVGLGKT 166 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + + P+ ++ Y++ E F SAIR++ + ++ R ++LL+DD+QF Sbjct: 167 HLMQAIGHYRLDNNPDSKIFYVSTEQFTNDLISAIREDSIQSFREHYRTAEVLLVDDIQF 226 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQ+V A+DRPP+++ SL+ R+ SR G+ + D Sbjct: 227 IEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQINSLEERLCSRFSMGLIADIQPPDL 286 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +IL+ + ED + + +V+ ++A + T++ REL+GA + V S A + + Sbjct: 287 ETRMAILQK-----KAEDENIRLPHDVVEYIAASYTSNIRELEGALTRAVTYISIAGLAM 341 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E +L+ + E I ++ +N+S DL S+ R R + RQ+ MYL Sbjct: 342 NVENIAPILNPPTKKIQA---SPEVILSTISDTFNLSVEDLKSSSRRREISWARQIGMYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV+++ K+ ++ E D L +++ L I+ Sbjct: 399 MRQHTELSLPRIGEEFGGKDHTTVMYSCDKITQLREKDDELAQKLSQLSDRIN 451 >gi|62288992|ref|YP_220785.1| chromosomal replication initiation protein [Brucella abortus bv. 1 str. 9-941] gi|82698933|ref|YP_413507.1| chromosomal replication initiation protein [Brucella melitensis biovar Abortus 2308] gi|148559145|ref|YP_001258050.1| chromosomal replication initiation protein [Brucella ovis ATCC 25840] gi|256368466|ref|YP_003105972.1| chromosomal replication initiation protein [Brucella microti CCM 4915] gi|261316660|ref|ZP_05955857.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis B2/94] gi|261324123|ref|ZP_05963320.1| chromosomal replication initiator protein dnaA [Brucella neotomae 5K33] gi|261751325|ref|ZP_05995034.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 5 str. 513] gi|265987732|ref|ZP_06100289.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M292/94/1] gi|265992206|ref|ZP_06104763.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 1 str. Rev.1] gi|265993946|ref|ZP_06106503.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 3 str. Ether] gi|38257710|sp|Q8YED5|DNAA_BRUME RecName: Full=Chromosomal replication initiator protein DnaA gi|71151794|sp|Q57G10|DNAA_BRUAB RecName: Full=Chromosomal replication initiator protein DnaA gi|62195124|gb|AAX73424.1| DnaA, chromosomal replication initiator protein [Brucella abortus bv. 1 str. 9-941] gi|82615034|emb|CAJ09955.1| ATP/GTP-binding site motif A (P-loop):Bacterial chromosomal replication initiator protein, DnaA:AAA ATPase:Neutral zinc metal [Brucella melitensis biovar Abortus 2308] gi|148370402|gb|ABQ60381.1| chromosomal replication initiator protein DnaA [Brucella ovis ATCC 25840] gi|255998624|gb|ACU47023.1| chromosomal replication initiation protein [Brucella microti CCM 4915] gi|261295883|gb|EEX99379.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis B2/94] gi|261300103|gb|EEY03600.1| chromosomal replication initiator protein dnaA [Brucella neotomae 5K33] gi|261741078|gb|EEY29004.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 5 str. 513] gi|262764927|gb|EEZ10848.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 3 str. Ether] gi|263003272|gb|EEZ15565.1| chromosomal replication initiator protein dnaA [Brucella melitensis bv. 1 str. Rev.1] gi|264659929|gb|EEZ30190.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M292/94/1] Length = 496 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 286/496 (57%), Positives = 366/496 (73%), Gaps = 27/496 (5%) Query: 31 LEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Sbjct: 1 MKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINN 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSP 142 Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 61 HYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVG 120 Query: 143 IILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE Sbjct: 121 QSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA 180 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIR Sbjct: 181 ---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIR 237 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 DN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELE Sbjct: 238 DNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELE 297 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 SLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT Sbjct: 298 SLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTG 357 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ Sbjct: 358 SGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSK 417 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D Sbjct: 418 QDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGAD 477 Query: 487 ITLKKEVELLKRLISE 502 L +E+ELLKRLI++ Sbjct: 478 TKLAQELELLKRLIND 493 >gi|23500917|ref|NP_697044.1| chromosomal replication initiation protein [Brucella suis 1330] gi|261755890|ref|ZP_05999599.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 3 str. 686] gi|38257642|sp|Q8G3E7|DNAA_BRUSU RecName: Full=Chromosomal replication initiator protein DnaA gi|23346770|gb|AAN28959.1| chromosomal replication initiator protein DnaA [Brucella suis 1330] gi|261745643|gb|EEY33569.1| chromosomal replication initiator protein dnaA [Brucella suis bv. 3 str. 686] Length = 496 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 286/496 (57%), Positives = 366/496 (73%), Gaps = 27/496 (5%) Query: 31 LEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Sbjct: 1 MKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINN 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSP 142 Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 61 HYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVG 120 Query: 143 IILGKQTI----------------SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 G Q++ V GSPLD R+ F TF++G+SNRVAL AA++IAE Sbjct: 121 QSFGGQSLGEKRGSAVVAESAAATDAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA 180 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIR Sbjct: 181 ---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIR 237 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 DN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELE Sbjct: 238 DNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELE 297 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 SLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT Sbjct: 298 SLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTG 357 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ Sbjct: 358 SGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSK 417 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D Sbjct: 418 QDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGAD 477 Query: 487 ITLKKEVELLKRLISE 502 L +E+ELLKRLI++ Sbjct: 478 TKLAQELELLKRLIND 493 >gi|260755857|ref|ZP_05868205.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 6 str. 870] gi|260760806|ref|ZP_05873149.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 2 str. 86/8/59] gi|260884882|ref|ZP_05896496.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 9 str. C68] gi|261314779|ref|ZP_05953976.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M163/99/10] gi|260671238|gb|EEX58059.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 2 str. 86/8/59] gi|260675965|gb|EEX62786.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 6 str. 870] gi|260874410|gb|EEX81479.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 9 str. C68] gi|261303805|gb|EEY07302.1| chromosomal replication initiator protein dnaA [Brucella pinnipedialis M163/99/10] Length = 494 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 286/489 (58%), Positives = 362/489 (74%), Gaps = 24/489 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T Sbjct: 6 SEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLT 65 Query: 95 KLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L+QEE+ +I VE++VR V + E ++ + ++P + G Q+ Sbjct: 66 ELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQSFGGQS 125 Query: 150 IS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + V GSPLD R+ F TF++G+SNRVAL AA++IAE G + Sbjct: 126 LGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GSSA 182 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL+ Sbjct: 183 VRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNALSF 242 Query: 254 KDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R+R Sbjct: 243 KEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVR 302 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL+G Sbjct: 303 SRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGRELEG 362 Query: 374 AFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 AFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLSNR Sbjct: 363 AFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLSNR 422 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L +E+ Sbjct: 423 RTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQEL 482 Query: 494 ELLKRLISE 502 ELLKRLI++ Sbjct: 483 ELLKRLIND 491 >gi|86604734|ref|YP_473497.1| chromosomal replication initiation protein [Synechococcus sp. JA-3-3Ab] gi|123724517|sp|Q2JQW9|DNAA_SYNJA RecName: Full=Chromosomal replication initiator protein DnaA gi|86553276|gb|ABC98234.1| chromosomal replication initiator protein DnaA [Synechococcus sp. JA-3-3Ab] Length = 467 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 252/472 (53%), Gaps = 16/472 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ + ++ L+ Q+ + +W + + S++ N + +S P+ + + W++ Y Sbjct: 1 MDISLDRLWDEALGHLQVQLSRPTFEAWIKTARAESLVDNRLTISTPSEWARGWLQKHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TIT++ Q VE V AL E +++ + T + S +P+ L Sbjct: 61 STITEVVQRVAGIPLQVEFSVAPQALVEEEAPSTAVASTSRKAGSFPAS-APLGLEVSGS 119 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P+ L+ ++ FS F+ G +NR+A AA ++A+ Y NPLF+ VGLGKT Sbjct: 120 LPMRAPDLNPKYSFSRFVVGPNNRMAHAAALAVADKPGRAY-----NPLFLCGGVGLGKT 174 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P +V Y++ E F AIR + + ++ R++D+LL+DD+QF Sbjct: 175 HLMQAIGHYQLEANPRAKVFYVSTERFTNDLIDAIRRDSMQSFREHYRDVDILLVDDIQF 234 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L +S KQ+V AADR P + L R+ SR G+ + D Sbjct: 235 IEGKEYTQEEFFHTFNTLHESGKQIVLAADRSPHLIPRLQERLCSRFSMGLIAEIQPPDI 294 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK + E + + EV+ ++A T T++ REL+GA + V S + + + Sbjct: 295 ETRMAILKK-----KAEYEGMILPPEVIEYIATTYTSNIRELEGALIRAVAYVSISGLPM 349 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E +L+ E K++ + I +V + + + R LL + R R + + RQ+AM+L Sbjct: 350 SVETIQPILN---PPSEPKEITPDMIIDVVCEEFGVDRESLLGSSRKRDISQARQIAMFL 406 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + T S P+IG FG +DHTTVL++ KV ++ ++ +++++ L + + Sbjct: 407 MRHHTNLSLPKIGDYFGGKDHTTVLYSCEKVSQLQRENLQFERQLQNLAQRL 458 >gi|196230261|ref|ZP_03129124.1| chromosomal replication initiator protein DnaA [Chthoniobacter flavus Ellin428] gi|196225858|gb|EDY20365.1| chromosomal replication initiator protein DnaA [Chthoniobacter flavus Ellin428] Length = 464 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 140/479 (29%), Positives = 253/479 (52%), Gaps = 24/479 (5%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 VDK +++ +++++K +V D Y WF+ ++ + + L VP + + WI Sbjct: 6 VDKSLDSAGLNALWAEITAQIKTEVSADSYDRWFRDIEPVELDEKTLTLRVPNSIFQLWI 65 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 +N Y + + + + + + ++T +P L+P ++ Sbjct: 66 ENNYQAHLRSVVMLVLGSPRNIHYVYQ-------DETKIAPPPKVLTPAQKPKAE----P 114 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + + S + R F +F+ G++N+ A A +++++ + Y NPLFI+ V Sbjct: 115 AEPRMPAGGTSGFNPRNNFDSFVVGTNNQFAHAACKAVSDAPARTY-----NPLFIYGGV 169 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ AI +A + ++ +VVY+T+E F F AI++N + + R D+LLI Sbjct: 170 GLGKTHLMHAIGHAILSKRKPGKVVYITSEAFTNEFIDAIQNNTLIKFRKRYRQADVLLI 229 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL K Q EF H N+L D KQ+V ++DRPPSE+ +L+ R+ SR + G++ L Sbjct: 230 DDIQFLADKGRTQEEFFHTFNTLFDGHKQIVLSSDRPPSEIANLETRLVSRFEWGLTAEL 289 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + + ++ +++E++ +A + T+ R L+GA ++ S Sbjct: 290 QAPDIETRVAILRK-----KAQSVEIQLDDEIIQFLAARIRTNVRRLEGALMRVASYVSL 344 Query: 385 --APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + E + LL +++ + + I+ IQ+ VA+H+++ D+ S RR + PR Sbjct: 345 SHGRLPGMEKIEHLLKDILHEEARRAITIDQIQKRVAEHFDVRLADMTSKRRPANIAFPR 404 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AM+L++ +T S EIG FG RDH TVLHA R V + + D ++ V L+ ++ Sbjct: 405 QIAMFLARELTKTSLNEIGEAFGGRDHGTVLHAHRLVREKMTKDERTRQIVSFLESQLT 463 >gi|325288202|ref|YP_004264383.1| chromosomal replication initiator protein DnaA [Syntrophobotulus glycolicus DSM 8271] gi|324963603|gb|ADY54382.1| chromosomal replication initiator protein DnaA [Syntrophobotulus glycolicus DSM 8271] Length = 446 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 149/469 (31%), Positives = 250/469 (53%), Gaps = 34/469 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + + +L+N++ + +W K S ++N + +SV F K W+++RY I Sbjct: 8 LNAFWENILDKLRNELSKASFDTWLSSTKLVSFVNNRLTISVSNEFAKDWLESRYSALIK 67 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 Q +R + +V E II + Sbjct: 68 STVQNYLNRPVALTFVVEQEQNYQPE----------------------IIESNDQKFGIL 105 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 PL+ ++ F TF+ G+ NR A AA ++AE + Y NPLF++ GLGKTHL+ Sbjct: 106 SHPLNRKYTFDTFVIGNGNRFAHAAALAVAESPAKSY-----NPLFLYGGSGLGKTHLMH 160 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + P +++VY+T E F +IR + +++ R +DLLLIDD+QFL GK Sbjct: 161 AIGHIINRNFPEMKIVYVTGEQFTNEMIDSIRYERQVEFRNTYRKVDLLLIDDIQFLAGK 220 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G++ + DYE R Sbjct: 221 EGTQEEFFHTFNTLYEANKQIIISSDRPPREIPTLEERLRSRFEWGLTTDINPPDYETRI 280 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL+ + + + +E++ +A ++ ++ REL+GA +++ +T E+ Sbjct: 281 AILRK-----KAQLENYIVPDEIITFIASSIQSNIRELEGALSKITAFCMLTNQSITVEL 335 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+E+L ++ K + IE IQ+ VA+HY +S N+L +R RT+ PRQVAMY+S+ + Sbjct: 336 AEEILKDMIPNRNQKIISIELIQKTVAEHYKMSVNELKQKKRTRTIAFPRQVAMYISRQL 395 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG +FG RDHTTV+HA K+ +M E D ++K + + I Sbjct: 396 TDCSLPQIGEKFGGRDHTTVIHAFDKISEMKEHDPFVEKSINEIINKIK 444 >gi|260461961|ref|ZP_05810206.1| chromosomal replication initiator protein DnaA [Mesorhizobium opportunistum WSM2075] gi|259032208|gb|EEW33474.1| chromosomal replication initiator protein DnaA [Mesorhizobium opportunistum WSM2075] Length = 490 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 276/490 (56%), Positives = 357/490 (72%), Gaps = 20/490 (4%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + + E F V ++LK ++G +VY+SWF R+K IV +SVPT FL++WI Y Sbjct: 2 AVSSDAEQKFDRVKAQLKARLGAEVYSSWFGRMKVAEASKGIVRISVPTAFLRSWINGHY 61 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPS--------------VEKTASSPSITKLSPIN 135 L+ I++L+++E + + +EI+VR+ +T ++ + +SP Sbjct: 62 LDLISELWKQEDADLLKIEIIVRTATRQGRSHAEPELAPVRKMTRQTQTALAAGTVSPGR 121 Query: 136 TNISKSP---IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 S P + + V GSPLD R+ F +FIEG SNRVA AA+++AE S + Sbjct: 122 IERSPVPRPGAAIESEFRHNVLGSPLDPRYTFGSFIEGPSNRVAFAAAKAVAESQS---S 178 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 VR NPLF+HA+VGLGKTHLLQAIA S+K+ P RVVYLTAEYFMWRFA+AIRDN AL Sbjct: 179 AVRFNPLFLHATVGLGKTHLLQAIAAESLKQNPKSRVVYLTAEYFMWRFATAIRDNNALT 238 Query: 253 LKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 LK+ LR+IDLL+IDDMQFLQGK IQHEFCHL+N LLDSAKQVV AADRPPSELESL+PR+ Sbjct: 239 LKEQLRDIDLLIIDDMQFLQGKSIQHEFCHLINMLLDSAKQVVVAADRPPSELESLEPRV 298 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 RSRL GGV++ + D+ MR +LK RLA ++ +D L+I+EE+L HVARTVT SGREL+ Sbjct: 299 RSRLNGGVALEMSAPDFAMRLGMLKLRLATARVDDASLDISEEILNHVARTVTGSGRELE 358 Query: 373 GAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 GAFNQL+FR SF P +T + DE+L H+ TGE K++RIEDIQR+VA+HYN+S+ +LLSN Sbjct: 359 GAFNQLLFRQSFEPQITIDRIDEILGHIYRTGEPKRVRIEDIQRIVARHYNVSKTELLSN 418 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR RT+V+PRQVAMYLSK+MTPRS PEIGRRFG RDHTTVLHAVRK+E + D TL +E Sbjct: 419 RRTRTIVKPRQVAMYLSKVMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLSGNDNTLAQE 478 Query: 493 VELLKRLISE 502 +ELL+RLI++ Sbjct: 479 LELLRRLIND 488 >gi|260887485|ref|ZP_05898748.1| ATPase [Selenomonas sputigena ATCC 35185] gi|330837867|ref|YP_004412447.1| chromosomal replication initiator protein DnaA [Selenomonas sputigena ATCC 35185] gi|260862772|gb|EEX77272.1| ATPase [Selenomonas sputigena ATCC 35185] gi|329745631|gb|AEB98987.1| chromosomal replication initiator protein DnaA [Selenomonas sputigena ATCC 35185] Length = 488 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 149/495 (30%), Positives = 256/495 (51%), Gaps = 35/495 (7%) Query: 31 LEVN-CESIFTIVSSRL--KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +E + ++I+ + ++ + + W + +K S+ + L PT+ + WI Sbjct: 1 MEQSELQAIWEQILQKVLEQRSLTELALNDWLRPVKPLSLSDTTLVLGAPTSLAREWIVK 60 Query: 88 RYLETITKLFQEEHSRIQGVEI------------------LVRSVALPSVE--KTASSPS 127 RY+ + + + +EI L + PSV+ K A Sbjct: 61 RYIPFLEDAVLDIAKKKLKIEIKNLNIEPAPTSPPVQETLLTETGTNPSVQEVKDAKKIP 120 Query: 128 ITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 + + S I+P S L+S + F TF+ G+SNR A AA ++AE Sbjct: 121 VPSQNAAPKKEDGSRSYEPPGMIAPGDASSLNSHYTFDTFVTGNSNRFAHAAALAVAESP 180 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 Y NP F++ VGLGKTHL+ AI + +++ P +RV+Y+++E F ++IRD Sbjct: 181 GRVY-----NPFFMYGGVGLGKTHLMHAIGHKILEKFPQMRVLYISSEKFTNELINSIRD 235 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 + + RNID+LL+DD+QFL K Q EF H N+L D+ K ++ ++DR P E++ Sbjct: 236 GNPESFRQKYRNIDVLLVDDIQFLSKKEHTQEEFFHTFNTLHDANKHIILSSDRHPREIQ 295 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 +L+ R+RSR + G+ + D E R +IL+ + A+ L++ +V+ +A + Sbjct: 296 TLEDRLRSRFEWGLITDIQAPDLETRIAILRKKAALE-----HLDVPNDVMFSIANRIDN 350 Query: 367 SGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 + REL+GA ++V S +T + +E L+++ +T+++ +E IQ +VA ++ + Sbjct: 351 NIRELEGALTRVVAYASLTKQPVTTSLVNEALANIFPEEKTREVTMELIQEVVASYFKLR 410 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 +DL +R R + PRQ+AMYL + +T S P+IG FG RDHTTV+HA K+ K + Sbjct: 411 LDDLHGKKRTRNLAMPRQIAMYLCRELTGNSLPQIGNSFGGRDHTTVIHACDKIGKERKE 470 Query: 486 DITLKKEVELLKRLI 500 D L + +E L + I Sbjct: 471 DSKLDRTIEQLMQRI 485 >gi|260759080|ref|ZP_05871428.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 4 str. 292] gi|260669398|gb|EEX56338.1| chromosomal replication initiator protein dnaA [Brucella abortus bv. 4 str. 292] Length = 494 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 285/489 (58%), Positives = 362/489 (74%), Gaps = 24/489 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E F ++++LK +VG ++Y+SWF R+K + +IV LSVPT FL++WI N Y E +T Sbjct: 6 SEEAFERLTAKLKARVGGEIYSSWFGRMKLDDISKSIVRLSVPTAFLRSWINNHYSELLT 65 Query: 95 KLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L+QEE+ +I VE++VR V + E ++ + ++P + G Q+ Sbjct: 66 ELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQSFGGQS 125 Query: 150 IS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + V GSPLD R+ F TF++G+SNRVAL AA++IAE G + Sbjct: 126 LGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GSSA 182 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL+ Sbjct: 183 VRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNALSF 242 Query: 254 KDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R+R Sbjct: 243 KEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVR 302 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL+G Sbjct: 303 SRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGRELEG 362 Query: 374 AFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 AFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLSNR Sbjct: 363 AFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLSNR 422 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L +E+ Sbjct: 423 RTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQEL 482 Query: 494 ELLKRLISE 502 ELLKRLI++ Sbjct: 483 ELLKRLIND 491 >gi|265983181|ref|ZP_06095916.1| chromosomal replication initiator protein dnaA [Brucella sp. 83/13] gi|264661773|gb|EEZ32034.1| chromosomal replication initiator protein dnaA [Brucella sp. 83/13] Length = 494 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 285/489 (58%), Positives = 360/489 (73%), Gaps = 24/489 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T Sbjct: 6 SEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLT 65 Query: 95 KLFQEEHSRIQGVEILV--------RSVALPSVEKTASSPSITKLSPINTNISKS----- 141 +L+QEE+ +I VE++V + + E + P+IT + + +S Sbjct: 66 ELWQEENPQILKVEVVVRGVSRVVRNAAPAETCENAEAKPAITPREKMVFPVGQSFGGQS 125 Query: 142 --------PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + V GSPLD R+ F TF++G+SNRVAL AA++IAE G + Sbjct: 126 LGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVALAAARTIAEA---GSSA 182 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL+ Sbjct: 183 VRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNALSF 242 Query: 254 KDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R+R Sbjct: 243 KEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVR 302 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL+G Sbjct: 303 SRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGRELEG 362 Query: 374 AFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 AFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLSNR Sbjct: 363 AFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLSNR 422 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L +E+ Sbjct: 423 RTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQEL 482 Query: 494 ELLKRLISE 502 ELLKRLI++ Sbjct: 483 ELLKRLIND 491 >gi|332286195|ref|YP_004418106.1| chromosomal replication initiation protein [Pusillimonas sp. T7-7] gi|330430148|gb|AEC21482.1| chromosomal replication initiation protein [Pusillimonas sp. T7-7] Length = 466 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 136/476 (28%), Positives = 226/476 (47%), Gaps = 18/476 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYL 90 ++ + + RL+ + P ++W + L + L S P F W++ + Sbjct: 1 MDMKDFWQTCVQRLEQDLPPQQISAWIRPLVPLAFDETQAVLRVSAPNRFKLDWVRKNFS 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I L E + R V + + + + + + + Sbjct: 61 HKIETLATEWYERPVQVLFELAGGGAVARASAPARTATPNTAAPAAAGVPATPAAANPAV 120 Query: 151 SPVF--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 V S L++ F F+ G +N++A AA +AE Y NPLF++ VGLG Sbjct: 121 EQVMHDRSRLNTDLTFDNFVTGKANQLARAAALQVAENPGVSY-----NPLFLYGGVGLG 175 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI N + RV Y+ A+ ++ A + K ++DLLLIDD+ Sbjct: 176 KTHLIHAIGNTLLANGNGTRVRYVHADQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDI 235 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF GK Q EF + +++ KQ++ +D P EL ++D R+ SR G++V + Sbjct: 236 QFFAGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSNIDSRLISRFDSGLTVAIEPP 295 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--A 385 + EMR +IL + + + + + EEV +A+ + ++ REL+GA ++ F Sbjct: 296 ELEMRVAIL-----LHKAQTEGVTMPEEVAFFIAKHLRSNVRELEGALRKVSAYARFHGR 350 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +LT ++ + L L++ ++ +E+IQ+ VA Y I D+ S RR + PRQVA Sbjct: 351 EVLTVDVCKDALKDLLSVSNG-QITVENIQKTVADFYKIKVADMYSKRRPANIAMPRQVA 409 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL+K +T +S PEIG FG RDHTTVLHAVRK+ L + +L++ + Sbjct: 410 MYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARSKQTELNHALHVLEQTLK 465 >gi|253995375|ref|YP_003047439.1| chromosomal replication initiator protein DnaA [Methylotenera mobilis JLW8] gi|253982054|gb|ACT46912.1| chromosomal replication initiator protein DnaA [Methylotenera mobilis JLW8] Length = 472 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 145/483 (30%), Positives = 247/483 (51%), Gaps = 28/483 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + S+ + ++ + +W + L+ V + V + P F+ W+K+R+L+ I + Sbjct: 2 ENFWPACLSKFQKELSAQQFNTWIKPLQ-TEVNGDAVRIFAPNRFVMQWVKDRFLKKIEQ 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT--------------KLSPINTNISKS 141 +E +Q +L + A P+ + + T + T + Sbjct: 61 FAEEHQPDLQIELVLGDATAKPAPAEPVKKVAKTVLEAKLPAEEIRSESIKQNLTEVLAK 120 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + S L+ F F+ ++ G +N++A AA +AE Y NPLFI Sbjct: 121 TKKTAASAVKKTDTSNLNPTFNFNNYVTGRANQLARAAAIQVAENPGSAY-----NPLFI 175 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHLLQAI N P+ ++ YL AE ++ A K ++D Sbjct: 176 YGGVGLGKTHLLQAIGNELRLHNPDAKIRYLHAERYVSDVVKAYEHKAFDEFKRQYHSLD 235 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF K Q EF + NSL+++ KQ+V D P E+ +D R+R+R G+ Sbjct: 236 LLLIDDIQFFAKKTRTQEEFFYAFNSLIEAKKQIVITCDTYPKEIADVDERLRTRFSWGL 295 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + + E LN+ E+V +A+ + +S REL+GA N+++ Sbjct: 296 TVAVEPPELEMRVAIL-----LKKAEAVNLNLPEDVAFFIAKQIRSSVRELEGALNRIIA 350 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F + +A + L L+ +++ +E+IQ+ VA +Y I ++ S +R R Sbjct: 351 MSKFTGHAIDVHLAKDALRDLIAVR-GRQVTMENIQKTVADYYKIKVAEMYSKKRTRNFA 409 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AM LS+ +T SFPEIG FG R HTTV+HA +++++ + D T+ +++ L ++ Sbjct: 410 RPRQIAMALSRELTNHSFPEIGEAFGGRHHTTVMHACDEIDQLRQNDATIARDIGFLVQV 469 Query: 500 ISE 502 I + Sbjct: 470 IRD 472 >gi|260169591|ref|ZP_05756402.1| chromosomal replication initiation protein [Brucella sp. F5/99] gi|261759117|ref|ZP_06002826.1| chromosomal replication initiation protein [Brucella sp. F5/99] gi|265997193|ref|ZP_06109750.1| chromosomal replication initiator protein dnaA [Brucella ceti M490/95/1] gi|261739101|gb|EEY27097.1| chromosomal replication initiation protein [Brucella sp. F5/99] gi|262551661|gb|EEZ07651.1| chromosomal replication initiator protein dnaA [Brucella ceti M490/95/1] Length = 496 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 285/496 (57%), Positives = 365/496 (73%), Gaps = 27/496 (5%) Query: 31 LEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Sbjct: 1 MKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINN 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSP 142 Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 61 HYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVG 120 Query: 143 IILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 G Q++ V GSPLD R+ F TF++G+SN VAL AA++IAE Sbjct: 121 QSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAAARTIAEA 180 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIR Sbjct: 181 ---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIR 237 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 DN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELE Sbjct: 238 DNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELE 297 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 SLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT Sbjct: 298 SLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTG 357 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ Sbjct: 358 SGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSK 417 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D Sbjct: 418 QDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGAD 477 Query: 487 ITLKKEVELLKRLISE 502 L +E+ELLKRLI++ Sbjct: 478 TKLAQELELLKRLIND 493 >gi|254442816|ref|ZP_05056292.1| chromosomal replication initiator protein DnaA [Verrucomicrobiae bacterium DG1235] gi|198257124|gb|EDY81432.1| chromosomal replication initiator protein DnaA [Verrucomicrobiae bacterium DG1235] Length = 461 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 152/467 (32%), Positives = 246/467 (52%), Gaps = 17/467 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V S L + D++ SWF L + L V F WI + YL+ I K F Sbjct: 10 LWDKVRSELSQVLPADIFQSWFTDLVCLEADGENIVLGVQNAFTAYWISDNYLDLIAKSF 69 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 Q + V S+A S +P + T + Sbjct: 70 QAQLGFPVTV-----SIANQEKAAKEEPASEDLAAPTRERLVTETPRPRAPTAKKTGEAN 124 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R F F+ GS++++A A+ ++A + Y NPLF++ GLGKTHL+ A+ Sbjct: 125 LNPRNTFENFVIGSNSQLAHAASIAVAHAPAGAY-----NPLFLYGETGLGKTHLMHAVG 179 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + + +P RVVYL++E F F SAI++N + RN+D+LLIDD+QFL GK I Sbjct: 180 HHILANRPEARVVYLSSEKFTNEFISAIQENTLTKFRQRYRNVDVLLIDDVQFLSGKERI 239 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L +S KQ+ ++DRP +E+ L+ R+ SR Q G+ + D+E R +IL Sbjct: 240 QEEFFHTFNDLFESQKQIFLSSDRPANEIAKLESRLVSRFQWGLVTDIQAPDFETRVAIL 299 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 + + +I++EVL +A+ + + R L+GA ++ S L I ++ Sbjct: 300 RK-----KALQHNYDISDEVLHFIAKHIVKNIRRLEGALIKVCSYSSLTNKPLNIAICEQ 354 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 LLS ++ +++ I+ IQ+ VA+++ + +D+LS RR + PRQ+AMYLS+ +T Sbjct: 355 LLSDVLMEAAKQQLNIDTIQKKVAEYFELRHSDMLSRRRPAHIAVPRQIAMYLSRSLTKH 414 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S E+G FG RDH TV+HA ++V+ ++E D +++ VE LK L+++ Sbjct: 415 SLQEVGEAFGGRDHGTVIHACKQVDNLVEQDDSVRHSVEYLKNLLAK 461 >gi|148241930|ref|YP_001227087.1| chromosomal replication initiation protein [Synechococcus sp. RCC307] gi|147850240|emb|CAK27734.1| Chromosomal replication initiator protein dnaA [Synechococcus sp. RCC307] Length = 461 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 139/468 (29%), Positives = 243/468 (51%), Gaps = 23/468 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ V + L++ + + +W + S + L P F W++ YL I + Sbjct: 9 SNLWDQVRAELQSNLSKPTFETWIRPAVCVSAEQRRLVLEAPNPFAAGWLRRNYLGLIAE 68 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + VE+ +++ S E S ++ +P +S+ +Q Sbjct: 69 VASAISGGP--VEVQIQAGDEASSEPVGSVEAMPAPAPTPLPVSQPGTPKTRQK------ 120 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ R+ F F+ G ++R+A AA ++AE NPLF+ VGLGKTHL+QA Sbjct: 121 SNLNPRYTFQRFVVGPNSRMAHAAALAVAESPGR-----EFNPLFLCGGVGLGKTHLMQA 175 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + ++ P+ RV Y++ E F AIR + +D R DL+++DD+QF++GK Sbjct: 176 IGHYRLEIDPDSRVFYVSTETFTNDLILAIRKDGMQAFRDRYRAADLIMVDDIQFIEGKE 235 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ +Q+V A+DRPPS+++ L R+ SR G+ + D E R + Sbjct: 236 YTQEEFFHTFNALHEAGRQIVIASDRPPSQIQRLQERLISRFSMGLIADIQAPDLETRMA 295 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL + E ++ + +++ ++A T++ REL+GA + V FA I + Sbjct: 296 ILHK-----KAEQEQMRLPRDLIQYIAGRFTSNIRELEGALTRAVA---FASITGLPMTV 347 Query: 395 ELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + ++ L+ TG + + + + VA+ + +S D+ S+ R R V + RQV M+L + T Sbjct: 348 DAVAPLLGTGMPEGDINPKVVLEKVAEVFGVSTEDMCSSSRKRAVSQARQVGMHLMRQCT 407 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P+IG FG +DHTTV++AV++VEK L ++ L +V+ +K L+ Sbjct: 408 DLSLPKIGDHFGGKDHTTVMYAVQQVEKKLASNPALASQVQQVKDLLQ 455 >gi|261221232|ref|ZP_05935513.1| chromosomal replication initiator protein dnaA [Brucella ceti B1/94] gi|260919816|gb|EEX86469.1| chromosomal replication initiator protein dnaA [Brucella ceti B1/94] Length = 494 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 285/489 (58%), Positives = 361/489 (73%), Gaps = 24/489 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T Sbjct: 6 SEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLT 65 Query: 95 KLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L+QEE+ +I VE++VR V + E ++ + ++P + G Q+ Sbjct: 66 ELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQSFGGQS 125 Query: 150 IS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + V GSPLD R+ F TF++G+SN VAL AA++IAE G + Sbjct: 126 LGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNHVALAAARTIAEA---GSSA 182 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL+ Sbjct: 183 VRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNALSF 242 Query: 254 KDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R+R Sbjct: 243 KEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVR 302 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL+G Sbjct: 303 SRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGRELEG 362 Query: 374 AFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 AFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLSNR Sbjct: 363 AFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLSNR 422 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L +E+ Sbjct: 423 RTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQEL 482 Query: 494 ELLKRLISE 502 ELLKRLI++ Sbjct: 483 ELLKRLIND 491 >gi|21672843|ref|NP_660908.1| chromosomal replication initiator protein DnaA [Chlorobium tepidum TLS] gi|38257655|sp|Q8KGG6|DNAA_CHLTE RecName: Full=Chromosomal replication initiator protein DnaA gi|21645891|gb|AAM71250.1| chromosomal replication initiator protein DnaA [Chlorobium tepidum TLS] Length = 493 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 137/475 (28%), Positives = 246/475 (51%), Gaps = 19/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E +++ ++ + + +WF ++ S + + + VP+ F WI+ Y + Sbjct: 24 AEKVWSACLGLIQENINTLAFKTWFLPIRPLSFSGSELTIEVPSQFFYEWIEENYSVHVK 83 Query: 95 KLFQEEHSRIQGVEILV-------RSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + ++ + + + V + + ++P+ + P S Sbjct: 84 QALRQVIGPEAKLMYSIVIDKSQGQPVTIELPHQIDAAPAERSVRPEAPGQKASAERERL 143 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + P F S L+ ++ FST + G N +A A++SIA+ NPL I+ VGL Sbjct: 144 EIARPRFESNLNPKYTFSTLVRGDCNSLAFAASKSIAQNPGQN----AFNPLVIYGGVGL 199 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTH++QAI N+ ++ + V+Y+++E F F +AI++ RNID+L+IDD Sbjct: 200 GKTHMMQAIGNSVLENRITDAVLYVSSEKFAIDFVNAIQNGNIQEFSAFYRNIDVLIIDD 259 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q E H+ N+L S KQ++ +ADRP E++ ++ R+ SR G+S + Sbjct: 260 IQFFAGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKEIKGIEDRLISRFNWGLSTDIQA 319 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE R +I++++L S ++++ V+ +A VT++ REL+G +L+ HS Sbjct: 320 PDYETRKAIIQSKLKQS-----GVSLDPVVIEFIATNVTSNVRELEGCIVKLLAAHSLDN 374 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + + A L ++ TK++ +E I++ V +++I+ NDL + + + RQ+A Sbjct: 375 QEIDLQFAKSTLKDIIR-YNTKQLTLETIEKAVCSYFSITSNDLKGKSKKKEIAVGRQIA 433 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYLSK MT S IG FG RDH+TV+HA+ +EK + +K++E L++ I Sbjct: 434 MYLSKDMTDSSLKTIGLHFGGRDHSTVIHALNTIEKKIAASNEERKKIEELRKRI 488 >gi|310816811|ref|YP_003964775.1| chromosomal replication initiation protein [Ketogulonicigenium vulgare Y25] gi|308755546|gb|ADO43475.1| chromosomal replication initiation protein [Ketogulonicigenium vulgare Y25] Length = 468 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 169/468 (36%), Positives = 272/468 (58%), Gaps = 13/468 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V LK VG + + +W L+ S+ + SVPTNF+ ++ + E I Sbjct: 6 WVQVQDNLKAAVGVNNFTNWIAPLELDSLADGVATFSVPTNFIGNYVSTNFGELILYHLN 65 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT----NISKSPIILGKQTISPVF 154 ++Q + + + A PS+ + + ++ ++P + + Sbjct: 66 RLGIQVQRLGF-IAAAARPSLRGGLRAATPRRVGGAARLAEPAAPEAPAAPAPAKSNAIP 124 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + LD+R+ F FI G SN +A AA+ +A+ V NPLF++ VGLGKTHL+ Sbjct: 125 AAQLDARYTFDRFIVGKSNELAYAAARRVAQG-----GPVGFNPLFMYGGVGLGKTHLMH 179 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AIA+ ++QP+L V+YL+AE FM+RF SA+RD AL+ K LR++D+L+IDD+QF+ GK Sbjct: 180 AIAHELRRQQPDLNVLYLSAEQFMYRFVSALRDKKALDFKAMLRSVDVLMIDDVQFIAGK 239 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D+ KQV+ ++DR P E+ ++ RI SRLQ G+ V L D+ +R Sbjct: 240 ESTQEEFFHTFNALVDAQKQVIISSDRAPGEIRDINDRISSRLQAGLVVDLHPSDFTLRL 299 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +L++R + P + + E+VL +A ++++ R L+GA +L ++ + Sbjct: 300 GVLESRAKTAAAAYPHVVLEEDVLPFLAHRISSNIRVLEGALTRLFAFAGLVNKSISIAL 359 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 + L+ ++ +K+ +EDIQR V +HYNI D++ RRVR RPRQVAMYLSK M Sbjct: 360 TQDCLADILRAS-ERKVTVEDIQRRVCEHYNIRIADMVGPRRVRAFARPRQVAMYLSKKM 418 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGR FG RDHTT++H V+K+E+++ +D + ++++LKR + Sbjct: 419 TSRSLPEIGRHFGGRDHTTIMHGVKKIEQLISSDSQMADDLKVLKRAL 466 >gi|21326649|gb|AAL30089.1| chromosomal replication initiator protein DnaA [Xanthomonas campestris pv. campestris] Length = 442 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 156/468 (33%), Positives = 240/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVEQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E+ + + P +P S++ F Sbjct: 61 LAYFAGNG---EVALAVGSRPR-------------APEPLPASQAVASAPAAAPIVPFAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|78484347|ref|YP_390272.1| chromosomal replication initiator protein DnaA [Thiomicrospira crunogena XCL-2] gi|123728109|sp|Q31JS5|DNAA_THICR RecName: Full=Chromosomal replication initiator protein DnaA gi|78362633|gb|ABB40598.1| chromosomal replication initiator protein DnaA [Thiomicrospira crunogena XCL-2] Length = 467 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 150/475 (31%), Positives = 247/475 (52%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ V +L+ + + +W + L+ N + L P+ F+ W+ + L I + Sbjct: 4 TLWPQVLKQLEAVLNDQQFLTWIRPLEAVE-EDNTLRLIAPSGFILDWVNKKLLSQIKQA 62 Query: 97 FQ--------EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 E + I + + + + S + Sbjct: 63 VYLVAPVNTPEVTLEVGEYAIESFNEPENTSVPQPLRETKAEREAAEKAASSTSKKKSDS 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L++ F F TF+EG +N++A AA+ +A+ Y NP FI+ VGLG Sbjct: 123 PPKKTIKHNLNTNFTFDTFVEGKANQLAAAAARQVADNPGGSY-----NPFFIYGGVGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI N ++R PN RVVYL +E F+ +A+R N K R++D LLIDD+ Sbjct: 178 KTHLMHAIGNELMRRDPNARVVYLHSERFVADMVNALRHNKIDEFKRFYRSLDALLIDDI 237 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ KQV+ +DR P E++ L+ R++SR G+++ + Sbjct: 238 QFFAKKEQSQEEFFHTFNTLLEGNKQVILTSDRFPKEVDGLEDRLKSRFGWGLTIAVEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 ++EMR +IL + + + + +EV +A+ + + R+L+GA ++ F Sbjct: 298 EFEMRVAIL-----MKKAAEFGFLLPDEVAFFIAKRLRGNVRDLEGALKRVGAFAQFTQQ 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 ++T ++A + L L+ + K + +E+IQ+ VA +Y I DLLS RR R + RPRQ++M Sbjct: 353 LVTVDLAKDALKDLLALQQ-KMVTLENIQKTVADYYKIRVADLLSKRRTRNIARPRQMSM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +SK +T S PEIG FG RDHTTVLHAVRK+ ++ ETD ++++ L R+I+ Sbjct: 412 AISKELTSHSLPEIGDAFGGRDHTTVLHAVRKINELKETDHRIEEDFNSLIRIIT 466 >gi|320105247|ref|YP_004180837.1| chromosomal replication initiator protein DnaA [Terriglobus saanensis SP1PR4] gi|319923768|gb|ADV80843.1| chromosomal replication initiator protein DnaA [Terriglobus saanensis SP1PR4] Length = 478 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 145/480 (30%), Positives = 248/480 (51%), Gaps = 28/480 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + + L+ ++ + +W + +F + +++ +P++ + I +RY + + + Sbjct: 12 NFWVRILGALEKKINRQSFDTWLKPTRFSHLNGRTLYVRIPSSEFQ-HIGDRYADLVQEA 70 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP-------------I 143 + I V+ V PS+ KT + + SP Sbjct: 71 IDKLELEIDDVKF-VTPQDDPSLPKTREDGGFAPVPSHSMQAPLSPRNGRLGGAPPPPAP 129 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + S L++R++F F+ GS N+ A A+Q++AE S Y NPLF++ Sbjct: 130 TTEQARFDWNTASQLNARYLFDNFVIGSGNQFAHAASQAVAERPSKAY-----NPLFLYG 184 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VG+GKTHL+QAI + +R P+ + Y++ E F +++R + +D R +D+L Sbjct: 185 GVGMGKTHLMQAIGHEVKRRNPHASISYVSGEKFTNEMINSVRYDKMTTFRDKFRTVDVL 244 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QFL GK Q EF H N+L +S KQ+V A+DRPP EL + R+RSR + G+ Sbjct: 245 LIDDIQFLAGKERTQEEFFHTFNALHESMKQIVIASDRPPKELADFEDRLRSRFEWGLIA 304 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D E + +IL+ + E + + +V + VA V T+ REL+GA +L+ Sbjct: 305 DIQPPDLETKVAILQK-----KAESEQTVLPIDVALFVASNVRTNVRELEGALVRLLAWC 359 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 S +T A + L ++T +K+ IE IQR A+ + + ++L R++V P Sbjct: 360 SLHGVEITLPTAQQCLKQFIDTQ-VRKITIEAIQRATAEQFGMRVSELKQKNNSRSIVVP 418 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AMYL+K MT S PEIGR+FG + HTTV+H++ K+++ TD +L + L ++ Sbjct: 419 RQIAMYLAKQMTEASLPEIGRQFGGKHHTTVMHSISKIDEQRRTDKSLNSTINKLMETLN 478 >gi|166709896|ref|ZP_02241103.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzicola BLS256] Length = 442 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 157/468 (33%), Positives = 240/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 VAL + + +PI F Sbjct: 61 LAYFAGN--------GEVALAVGSRPRAPEPAPAPIAATVAPQAAPIAP--------FAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + +P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F ++T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRLITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|86142844|ref|ZP_01061283.1| chromosomal replication initiation protein [Leeuwenhoekiella blandensis MED217] gi|85830876|gb|EAQ49334.1| chromosomal replication initiation protein [Leeuwenhoekiella blandensis MED217] Length = 476 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 247/485 (50%), Gaps = 24/485 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++++ S +++ + P Y +WF+ ++ + N + + VP+ F W++ Y+ Sbjct: 1 MSMTAQTVWDNCLSFIQDNITPQAYKTWFEPIRAVKLTDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEK--TASSPSITKLSPINTNISKSPIILGKQ 148 + + +E + ++R ++ T PS + + + + +P+ Sbjct: 61 KLLKVSLTKELGEHAKLVYVIRMENTYGNKQPFTEKIPSTNRPNTMKSQEVDAPLKNKNP 120 Query: 149 TISPVF----------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + F S L+ + F F+EG SNR+A +A ++A NP Sbjct: 121 ELKNPFVIPGIRNLEIESQLNPNYNFENFLEGDSNRLARSAGMAVANKPG----GTSFNP 176 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L I VGLGKTHL AI R P+ V+Y++AE F ++ +++ N + + Sbjct: 177 LLIFGGVGLGKTHLAHAIGVQIKDRYPDKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQ 236 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ID+L++DD+Q L GK Q F H+ N L + KQVV +D+ P +++ ++ R+ SR + Sbjct: 237 VIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVVLTSDKAPVDMQDIEQRLLSRFK 296 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+S L +E R SI+KN+L E + E+++ +A + T+ REL+GA Sbjct: 297 WGLSAELQSPGFETRVSIIKNKLYQDGVE-----MPEDIVEFLANNIKTNIRELEGAIIS 351 Query: 378 LVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+ SF + E+A +++ + V +++ I+ IQ++V+ ++ + + L S R R Sbjct: 352 LIAHSSFNRKEINLELAKKIVDNYVK-HTKREVSIDYIQKVVSDYFQMDVDTLQSKTRKR 410 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + TD +K VE L Sbjct: 411 HIVQARQLAMFFAKKLTKASLASIGSQIGKRDHATVLHACKTVDNLSSTDKQFRKYVEDL 470 Query: 497 KRLIS 501 + ++ Sbjct: 471 NKKLT 475 >gi|225377585|ref|ZP_03754806.1| hypothetical protein ROSEINA2194_03235 [Roseburia inulinivorans DSM 16841] gi|225210561|gb|EEG92915.1| hypothetical protein ROSEINA2194_03235 [Roseburia inulinivorans DSM 16841] Length = 451 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 133/479 (27%), Positives = 250/479 (52%), Gaps = 38/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL-KAWIKN 87 ++ E + + +K + V + +W + L+ V N +++ VP+ + ++I Sbjct: 1 MDKILEK-WDEILQTVKTEHDVSDISFDTWIKPLEVFGVEGNTLYILVPSEQMTLSYISK 59 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +Y + E ++ ++ + P N K+P Sbjct: 60 KYYLPLKVAIAEIIGTEYEIQFIL-------------PEQTRNIRPSNNKGKKTPEPEAS 106 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + S L+ + F TF+ GS+NR A +A+ ++AE Y NPL+I+ GL Sbjct: 107 K------RSNLNPNYTFDTFVVGSNNRFAQSASLAVAESPGEAY-----NPLYIYGGPGL 155 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLL 264 GKTHL+ +I + ++R P +V+Y+T+E F +IR ++ R ID+L+ Sbjct: 156 GKTHLMHSIGHFILERNPEAKVLYVTSEEFTNEVIESIRSGNASAMNKFREKYRTIDVLM 215 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF+ GK Q EF H N+L + KQ++ +D+PP ++E+L+ RIRSR + G+ Sbjct: 216 IDDVQFIIGKESTQEEFFHTFNALHSAGKQIILTSDKPPKDMETLEERIRSRFEWGLMAD 275 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 +G DYE R +IL+ + E +++++++L ++A + ++ REL+GA N+L+ + Sbjct: 276 IGAPDYETRMAILRR-----KVESDDMSLSDDILNYIANNIKSNIRELEGALNKLLAYSN 330 Query: 384 FAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T EIA + L +++ + +++ + I +V++H+ IS + ++S R + RPR Sbjct: 331 LEKTEITMEIAKKELQNIITPDKPREITPQLIIEVVSEHFQISLDQMISKNRSNEIARPR 390 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AMYL K MT IG G RDH+T++H ++K+ +++ + +E +K+ I+ Sbjct: 391 QIAMYLCKTMTDIPLDSIGSLLGGRDHSTIIHGIKKIADEYDSNEQTRNLIETIKKKIN 449 >gi|261321147|ref|ZP_05960344.1| chromosomal replication initiator protein dnaA [Brucella ceti M644/93/1] gi|261293837|gb|EEX97333.1| chromosomal replication initiator protein dnaA [Brucella ceti M644/93/1] Length = 496 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 285/496 (57%), Positives = 365/496 (73%), Gaps = 27/496 (5%) Query: 31 LEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 ++++ E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Sbjct: 1 MKMDSAVSEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINN 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSP 142 Y E +T+L+QEE+ +I VE++VR V + E ++ + ++P + Sbjct: 61 HYSELLTELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVG 120 Query: 143 IILGKQTIS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 G Q++ V GSPLD R+ F TF++G+SNRV L AA++IAE Sbjct: 121 QSFGGQSLGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVVLAAARTIAEA 180 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 G + VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIR Sbjct: 181 ---GSSAVRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIR 237 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 DN AL+ K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELE Sbjct: 238 DNNALSFKEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELE 297 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 SLD R+RSRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT Sbjct: 298 SLDVRVRSRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTG 357 Query: 367 SGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 SGREL+GAFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ Sbjct: 358 SGRELEGAFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSK 417 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 DLLSNRR RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D Sbjct: 418 QDLLSNRRTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGAD 477 Query: 487 ITLKKEVELLKRLISE 502 L +E+ELLKRLI++ Sbjct: 478 TKLAQELELLKRLIND 493 >gi|241765812|ref|ZP_04763752.1| chromosomal replication initiator protein DnaA [Acidovorax delafieldii 2AN] gi|241364294|gb|EER59449.1| chromosomal replication initiator protein DnaA [Acidovorax delafieldii 2AN] Length = 471 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 142/469 (30%), Positives = 244/469 (52%), Gaps = 20/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ + +L + + +W + L + V L V F WI+ +Y I Sbjct: 19 QGLWQACTEQLAQDLPEQQFNTWIKPLVAQVADDFSKVTLFVANRFKLDWIRAQYAGRIA 78 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L + + + +E+ + SV +T P+ + T ++ + + F Sbjct: 79 ALLEALYGQSIILELAL--AQRESVARTYVRPNSAEA----TQAPEAAPSSTDEAPAGAF 132 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ F T +EG++NR+A +AA +A + H Y NPLFI+ VGLGKTHL+ Sbjct: 133 RTRLNPALTFETLVEGTANRMARSAAMHVAGMPGHLY-----NPLFIYGGVGLGKTHLVH 187 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N ++ +P+ +V+Y+ AE F+ A + K+ ++DLLLIDD+QF K Sbjct: 188 AVGNRLLQDKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANK 247 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR Sbjct: 248 DRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRV 307 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL I++ + EEV VA+ V ++ REL+GA +++ F ++ ++ Sbjct: 308 AIL-----INKARVEGTEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIQL 362 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 363 AREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKEL 421 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 422 TQKSLPEIGELFGGRDHTTVLHAVRKISGERQQLTELNQQLHVLEQTLK 470 >gi|294627438|ref|ZP_06706022.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665122|ref|ZP_06730425.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598259|gb|EFF42412.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605123|gb|EFF48471.1| chromosomal replication initiation protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 442 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 157/468 (33%), Positives = 241/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 VAL + + + + +PI+ F Sbjct: 61 LAYFAGN--------GEVALAVGSRPRAPEPAPAPVAVPSAPQAAPIVP--------FAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|189501471|ref|YP_001957188.1| chromosomal replication initiation protein [Candidatus Amoebophilus asiaticus 5a2] gi|189496912|gb|ACE05459.1| chromosomal replication initiator protein DnaA [Candidatus Amoebophilus asiaticus 5a2] Length = 477 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 145/480 (30%), Positives = 249/480 (51%), Gaps = 19/480 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + CE I+ + +K QV + +WF + + +NI+ + VP+ F W++ YL Sbjct: 1 MPSQCELIWNNCLAFIKGQVNEQSFKTWFTPIVPKKLENNILTIQVPSQFFYEWLEEHYL 60 Query: 91 ETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + ++ +E +E I+V T + P+ N N Sbjct: 61 GLLRQVIMQEIGPQGRLEYSIIVDQGNNQRAPVTINLPTQRNYIQGNNNQPSLTDSPHNP 120 Query: 149 TISPVFG-----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 F S L+ + F TFIEG N++A +AAQ++A+ + NPL ++ Sbjct: 121 FTLKNFKDLHQASYLNPNYTFETFIEGDCNQLARSAAQAVAKKPGNN----AFNPLMLYG 176 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTH++QA+ N N V+Y ++E F +F ++R+N + D+L Sbjct: 177 KVGLGKTHIVQALGNEVKAHFSNKFVLYASSEQFTTQFIESLRNNSVQDFTHFYLQADVL 236 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 ++DD+QFL GK Q F H+ N L S KQ+V +D PP +L+ L R+ SR + G++ Sbjct: 237 ILDDVQFLVGKEKTQEIFFHIFNHLHQSGKQIVMTSDCPPRDLKGLQERLLSRFKWGLTA 296 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 L D+E R +I+KN++ ++I E+++ ++A++V T+ REL+G L+ Sbjct: 297 DLQQPDFETRIAIIKNKIQAD-----GIDIGEDLVEYIAQSVDTNIRELEGVIISLIAHA 351 Query: 383 SFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 S + +A ++L ++V+ +T ++ I+ + ++V +H+N+S + S R + +V Sbjct: 352 SLNKRDVDLGLAKQVLKNIVHDIDT-EISIDYLHKIVTEHFNVSLESIKSKTRKKEIVIA 410 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQVAMYL+K T S IG+ G RDH+TV+HA++ V+ ML T+ K E +KR + Sbjct: 411 RQVAMYLAKHYTNHSLKSIGQYCGGRDHSTVIHAIQAVDDMLHTEHQFKASFEEIKRKVK 470 >gi|21229479|ref|NP_635396.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188989397|ref|YP_001901407.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. B100] gi|38257667|sp|Q8PEH5|DNAA_XANCP RecName: Full=Chromosomal replication initiator protein DnaA gi|226735863|sp|B0RLI8|DNAA_XANCB RecName: Full=Chromosomal replication initiator protein DnaA gi|21110939|gb|AAM39320.1| chromosomal replication initiator [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167731157|emb|CAP49329.1| chromosomal replication initiator protein [Xanthomonas campestris pv. campestris] Length = 442 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 155/468 (33%), Positives = 239/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVEQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E+ + + P +P ++ F Sbjct: 61 LAYFAGNG---EVALAVGSRPR-------------APEPLPAPQAVASAPAAAPIVPFAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|254186619|ref|ZP_04893136.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pasteur 52237] gi|157934304|gb|EDO89974.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pasteur 52237] Length = 533 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 147/542 (27%), Positives = 252/542 (46%), Gaps = 87/542 (16%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA----------------------LPSVEKTASSPSITKL 131 + L ++ + V+ ++ A P AS+P++ Sbjct: 62 SDLARDFWNAPIEVQFVLDPKAGQRSPAGATPLAPRAPLPSANPAPVAPGPASAPAVDAH 121 Query: 132 SPINT-------------------------------------NISKSPIILGKQTISP-- 152 +P +++ G++T P Sbjct: 122 APAPAGMNAATAAAVAAAQSAQAAQANAAALNADEAADLDLPSLTAHEAAAGRRTWRPGA 181 Query: 153 -----------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 S L+ F F+ G +N++A AA +A+ Y NPLF+ Sbjct: 182 ANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFL 236 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ AI N + +P R+ Y+ AE ++ A + + K ++D Sbjct: 237 YGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLD 296 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G+ Sbjct: 297 LLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGL 356 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + + + ++++E+V VA+ + ++ REL+GA +++ Sbjct: 357 TVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILA 411 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F +T E+ E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + Sbjct: 412 YSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIA 470 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ Sbjct: 471 RPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQT 530 Query: 500 IS 501 + Sbjct: 531 LK 532 >gi|53717714|ref|YP_106700.1| chromosomal replication initiation protein [Burkholderia pseudomallei K96243] gi|76810636|ref|YP_331717.1| chromosomal replication initiation protein [Burkholderia pseudomallei 1710b] gi|126441420|ref|YP_001057144.1| chromosomal replication initiation protein [Burkholderia pseudomallei 668] gi|254259753|ref|ZP_04950807.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1710a] gi|61212530|sp|Q63YW5|DNAA_BURPS RecName: Full=Chromosomal replication initiator protein DnaA gi|123771937|sp|Q3JXI6|DNAA_BURP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|166201868|sp|A3N473|DNAA_BURP6 RecName: Full=Chromosomal replication initiator protein DnaA gi|52208128|emb|CAH34058.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei K96243] gi|76580089|gb|ABA49564.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1710b] gi|126220913|gb|ABN84419.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 668] gi|254218442|gb|EET07826.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1710a] Length = 533 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 147/542 (27%), Positives = 252/542 (46%), Gaps = 87/542 (16%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA----------------------LPSVEKTASSPSITKL 131 + L ++ + V+ ++ A P AS+P++ Sbjct: 62 SDLARDFWNAPIEVQFVLDPKAGQRSPAGATPLAPRAPLPSANPAPVAPGPASAPAVDAH 121 Query: 132 SPINT-------------------------------------NISKSPIILGKQTISP-- 152 +P +++ G++T P Sbjct: 122 APAPAGMNAATAAAVAAAQAAQAAQANAAALNADEAADLDLPSLTAHEAAAGRRTWRPGA 181 Query: 153 -----------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 S L+ F F+ G +N++A AA +A+ Y NPLF+ Sbjct: 182 ANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFL 236 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ AI N + +P R+ Y+ AE ++ A + + K ++D Sbjct: 237 YGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLD 296 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G+ Sbjct: 297 LLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGL 356 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + + + ++++E+V VA+ + ++ REL+GA +++ Sbjct: 357 TVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILA 411 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F +T E+ E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + Sbjct: 412 YSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIA 470 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ Sbjct: 471 RPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQT 530 Query: 500 IS 501 + Sbjct: 531 LK 532 >gi|94967032|ref|YP_589080.1| chromosomal replication initiator protein DnaA [Candidatus Koribacter versatilis Ellin345] gi|94549082|gb|ABF39006.1| chromosomal replication initiator protein DnaA [Candidatus Koribacter versatilis Ellin345] Length = 461 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 242/468 (51%), Gaps = 22/468 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + V L+ +V Y +W + +F N + + VPT + I +Y + I + Sbjct: 12 NPWLQVLDALEKKVNRLSYDTWLKPTRFSHSQGNKIFVRVPTPEFR-HIGEKYGDLIQEA 70 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + VE + + A +P + + +Q G+ Sbjct: 71 LDSLGLGFEDVEFVTD-------QAPAEAPMRHDGGFPPQSAAAPAPARVQQARFDWDGA 123 Query: 157 -PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ +++F F+ G N+ A A++++A+ S Y NPLF++ VG+GKTHL+QA Sbjct: 124 AQLNPKYIFDNFVTGPGNQFAHAASRAVADRPSKTY-----NPLFLYGGVGMGKTHLMQA 178 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + + P + Y+++E F +++R + + ++ R +D+LLIDD+QF+ K Sbjct: 179 IGHTIKRNNPEHSICYVSSEKFTNDMINSVRYDKMTSFRERYRTVDVLLIDDIQFIARKE 238 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L + KQ+V A+DRPP EL ++ R+RSR + G+ + D E + + Sbjct: 239 RTQEEFFHTFNALHEQQKQLVIASDRPPKELAEIEDRLRSRFEWGLIADIQPPDLETKVA 298 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+ + E + + +V + +A + ++ REL+GA +LV S L A Sbjct: 299 ILQK-----KAESERTQLPTDVALFIASNIRSNVRELEGALIRLVAYSSLTGGELNLMTA 353 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++L +++ +T+K+ IE IQ+ A+ + + ++ + R +V PRQ+AMYL+K +T Sbjct: 354 QQVLKNII-DQQTRKVTIESIQKACAEQFGLRIAEIKAKNNSRAIVYPRQIAMYLAKHLT 412 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR+FG + HTTVLH+V K+++ ++D L + + L +S Sbjct: 413 EASLPEIGRQFGGKHHTTVLHSVDKIDEARKSDKDLNRLLNKLTESLS 460 >gi|302877246|ref|YP_003845810.1| chromosomal replication initiator protein DnaA [Gallionella capsiferriformans ES-2] gi|302580035|gb|ADL54046.1| chromosomal replication initiator protein DnaA [Gallionella capsiferriformans ES-2] Length = 451 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 248/471 (52%), Gaps = 23/471 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + ++ + S + + P + SW + LK + + L+ P++F +++R+ Sbjct: 1 MQEKAFWDACLSSFEKSLPPQQFNSWIKPLKL-TCEDSCFILTAPSSFALKILQDRFFPE 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + + + E V ++ ++ S+ P I+ S + +T Sbjct: 60 INRQAKLTYPVVPQFEFRV--------VESTTANSMPIAPPPEKKITTSDLKPKIETSFR 111 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +G L+ F F+ G +N++A AA +AE+ Y NPLFI+ VGLGKTHL Sbjct: 112 GYG-KLNQSLTFDNFVIGKANQLAFAAATQVAELPGVSY-----NPLFIYGGVGLGKTHL 165 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 QAI N + +P +V Y+ AE ++ A + N K ++D+LLIDD+QF Sbjct: 166 TQAIGNQILINRPQAKVCYMHAERYVADVVRAYQTNKFEEFKQYYHSLDVLLIDDIQFFA 225 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF + N+L+DS KQV+ +D P EL L+ R+ SR G+++ + + EM Sbjct: 226 GKNKTQEEFFYAFNTLVDSHKQVILTSDTFPKELTGLESRLVSRFGWGLTIAIEPPELEM 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + AIS +++ V +A+ V ++ REL+GA ++ F I++ Sbjct: 286 RVAILLKKAAIS-----GYVLDDAVAFFIAKHVNSNVRELEGALKRVEAYTKFHKRIISV 340 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + A E L ++ +++++ I++IQ+ VA ++ I D+LS +R R + RPRQ+AM L++ Sbjct: 341 DTAKEALKDIL-VAQSRQISIDNIQKTVADYFRIKIIDMLSKKRTRNLTRPRQIAMSLAR 399 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG +DH+TV+HA + + + D T+ + ++L + ++ Sbjct: 400 ELTTMSLPEIGNAFGGKDHSTVIHACQTIATLRAGDTTIDADYKILLQTLT 450 >gi|261218003|ref|ZP_05932284.1| chromosomal replication initiator protein dnaA [Brucella ceti M13/05/1] gi|260923092|gb|EEX89660.1| chromosomal replication initiator protein dnaA [Brucella ceti M13/05/1] Length = 494 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 285/489 (58%), Positives = 361/489 (73%), Gaps = 24/489 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E F ++++LK +VG ++Y+SWF RLK + +IV LSVPT FL++WI N Y E +T Sbjct: 6 SEEAFERLTAKLKARVGGEIYSSWFGRLKLDDISKSIVRLSVPTAFLRSWINNHYSELLT 65 Query: 95 KLFQEEHSRIQGVEILVRSV-----ALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L+QEE+ +I VE++VR V + E ++ + ++P + G Q+ Sbjct: 66 ELWQEENPQILKVEVVVRGVSRVVRSAAPAETCDNAEAKPAVTPREKMVFPVGQSFGGQS 125 Query: 150 IS----------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + V GSPLD R+ F TF++G+SNRV L AA++IAE G + Sbjct: 126 LGEKRGSAVVAESAAATGAVLGSPLDPRYTFDTFVDGASNRVVLAAARTIAEA---GSSA 182 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 VR NPLFIHASVGLGKTHLLQAIA A+++RQ RVVYLTAEYFMWRFA+AIRDN AL+ Sbjct: 183 VRFNPLFIHASVGLGKTHLLQAIAAAALQRQEKARVVYLTAEYFMWRFATAIRDNNALSF 242 Query: 254 KDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 K+ LR+IDLL+IDDMQFLQGK IQHEFCHLLN+LLDSAKQVV AADR PSELESLD R+R Sbjct: 243 KEQLRDIDLLVIDDMQFLQGKSIQHEFCHLLNTLLDSAKQVVVAADRAPSELESLDVRVR 302 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SRLQGGV++ + DYEMR +L+ RLA +Q ED L+I EE+L HVARTVT SGREL+G Sbjct: 303 SRLQGGVALEVAAPDYEMRLEMLRRRLASAQCEDASLDIGEEILAHVARTVTGSGRELEG 362 Query: 374 AFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 AFNQL+FR SF P ++ + DELL HL GE K++RIE+IQR+VA+HYN+S+ DLLSNR Sbjct: 363 AFNQLLFRQSFEPNISIDRVDELLGHLTRAGEPKRIRIEEIQRIVARHYNVSKQDLLSNR 422 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R RT+V+PRQVAMYL+K+MTPRS PEIGRRFG RDHTTVLHAVRK+E ++ D L +E+ Sbjct: 423 RTRTIVKPRQVAMYLAKMMTPRSLPEIGRRFGGRDHTTVLHAVRKIEDLVGADTKLAQEL 482 Query: 494 ELLKRLISE 502 ELLKRLI++ Sbjct: 483 ELLKRLIND 491 >gi|17548159|ref|NP_521561.1| chromosomal replication initiation protein [Ralstonia solanacearum GMI1000] gi|38257696|sp|Q8XTV4|DNAA_RALSO RecName: Full=Chromosomal replication initiator protein DnaA gi|17430466|emb|CAD16939.1| probable chromosomal replication initiator protein dnaa [Ralstonia solanacearum GMI1000] Length = 522 Score = 455 bits (1170), Expect = e-125, Method: Composition-based stats. Identities = 142/531 (26%), Positives = 244/531 (45%), Gaps = 76/531 (14%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNRYLETI 93 + + S++L++++ P + +W + L S ++ P F W+K+++ I Sbjct: 2 QDFWHAASAQLESELTPQQFKTWIKPLTPLSFDEQACMLRIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA----------------LPSVEKTASSPSITKLSPINT- 136 L + V+ ++ A P +T + ++ + +P Sbjct: 62 QSLACDYWEMQVDVQFVLDPTAGQRQAAMQPALAPMPMQPLAAQTMQAQAVPREAPARPT 121 Query: 137 ------------------------------------NISKSPIILGKQTISPVF------ 154 +P ++G + P Sbjct: 122 MAPYRETPMATAAHAAADIDVPVMDAAEASTQSYRVPAPAAPAVMGGLSAPPAAPVDDTV 181 Query: 155 --GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F + G +N++A AA +A Y NPL+++ VGLGKTHL Sbjct: 182 HERSRLNPILTFDNLVTGKANQLARAAAVQVANNPGKSY-----NPLYLYGGVGLGKTHL 236 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI N + P R+ Y+ AE ++ A + + K ++DLLLIDD+QF Sbjct: 237 IHAIGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFS 296 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EM Sbjct: 297 GKNRTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEM 356 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + + + + EEV VA+ + ++ REL+GA +++ +F +T Sbjct: 357 RVAIL-----MKKAQAENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITI 411 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K Sbjct: 412 EVTREALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAK 470 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 471 ELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 521 >gi|254483197|ref|ZP_05096430.1| chromosomal replication initiator protein DnaA [marine gamma proteobacterium HTCC2148] gi|214036568|gb|EEB77242.1| chromosomal replication initiator protein DnaA [marine gamma proteobacterium HTCC2148] Length = 475 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 149/483 (30%), Positives = 247/483 (51%), Gaps = 42/483 (8%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ RL++++ + +W + L+ S + + L P F+K ++ +++ I++L Sbjct: 5 VWQQCVDRLQDELPSQQFNTWIRPLQA-SSDGHSLTLFAPNRFIKDFVSDKFSRRISELI 63 Query: 98 QE-EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG----KQTISP 152 E E V + + S A +P+ + P + G + +P Sbjct: 64 AELEPGGGLDVVLQIGSEVNKPTLPAAMTPAAHTKPSVPVVDKMPPAVSGAAVFSRPTAP 123 Query: 153 VFGSP-----------------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 V L + F F+EG SN++AL AA+ +AE Sbjct: 124 VVTRNGIANGAAQARQAEIEGSLQHQHSLVETYTFDNFVEGKSNQLALAAARQVAENPGD 183 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLF++ VGLGKTHL+ A+ NA +PN +VVYL +E F+ A++ N Sbjct: 184 SY-----NPLFLYGGVGLGKTHLMHAVGNALRLNKPNAKVVYLHSERFVADMVKALQLNA 238 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K R +D LLIDD+QF K Q EF H N+LL+ +Q++ DR P E++ L Sbjct: 239 ISDFKRYYRTVDALLIDDIQFFAKKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEIDGL 298 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R++SR G++V + + E R +IL + + ++N+ + +A+ + ++ Sbjct: 299 EERLKSRFGWGLTVAVEPPELETRVAIL-----MKKATQARINLPPDAAFFIAQRIRSNV 353 Query: 369 RELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +++ F + ++ E L L+ K++ ++IQR VA++Y I Sbjct: 354 RELEGALKRVIASAHFTGKDIDIDLIKESLKDLLALQ-DKQVSQDNIQRTVAEYYKIKVA 412 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DL+S RR R+V RPRQVAM L+K +T S PEIG FG RDHTTVLHA RK++++ ET+ Sbjct: 413 DLMSRRRSRSVARPRQVAMALAKELTNHSLPEIGDSFGGRDHTTVLHACRKIKELRETNS 472 Query: 488 TLK 490 ++ Sbjct: 473 DIR 475 >gi|21240775|ref|NP_640357.1| chromosomal replication initiation protein [Xanthomonas axonopodis pv. citri str. 306] gi|38257669|sp|Q8PRG2|DNAA_XANAC RecName: Full=Chromosomal replication initiator protein DnaA gi|21106039|gb|AAM34893.1| chromosomal replication initiator [Xanthomonas axonopodis pv. citri str. 306] Length = 442 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 157/468 (33%), Positives = 241/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 VAL + + + + +PI+ F Sbjct: 61 LAYFVGN--------GDVALAVGSRPRAPEPAPAPVAVPSAPQAAPIVP--------FAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|193211677|ref|YP_001997630.1| chromosomal replication initiation protein [Chlorobaculum parvum NCIB 8327] gi|193085154|gb|ACF10430.1| chromosomal replication initiator protein DnaA [Chlorobaculum parvum NCIB 8327] Length = 493 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 138/475 (29%), Positives = 242/475 (50%), Gaps = 19/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E ++ ++ + + +WF ++ S + + + VP+ F WI+ Y + Sbjct: 24 AEKVWNACLELIQENINSLAFKTWFLPIRPLSFSGSELTIEVPSQFFYEWIEENYSVHVK 83 Query: 95 KLFQEEHSRIQGVEILV-------RSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + ++ + + + V + + A +P+ + P S Sbjct: 84 QALRQVIGPEAKLMYSIVMDKSQGQPVTIELPHQNAHAPTESDTKPERAQEPVSAERERF 143 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + F S L+ ++ FST I G N +A AA+SIA+ NPL I+ VGL Sbjct: 144 ERNRTKFESNLNPKYTFSTLIRGDCNSLAFAAAKSIAQNPGQN----AFNPLVIYGGVGL 199 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTH++QAI N+ ++ + + V+Y+++E F F +AI++ RNID+L+IDD Sbjct: 200 GKTHMMQAIGNSVLENRISGAVLYVSSEKFAIDFVNAIQNGNIQEFSAFYRNIDVLIIDD 259 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q E H+ N+L + KQ++ +ADRP E++ ++ R+ SR G+S + Sbjct: 260 IQFFAGKEKTQEEIFHIFNTLHQANKQIILSADRPIKEIKGIEDRLISRFNWGLSTDIQA 319 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE R +I++ S+ + +N++ V+ +A VT + REL+G +L+ HS Sbjct: 320 PDYETRKAIIQ-----SKLKQNGVNLDPAVIEFIATNVTNNVRELEGCIVKLLAAHSLDN 374 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + + L ++ TK++ +E I++ V ++I+ NDL + + + RQ+A Sbjct: 375 QEIDLQFTKSTLKDIIR-YNTKQLTLETIEKAVCSFFSITPNDLKGKSKKKEIAVGRQIA 433 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYLSK MT S IG FG RDH+TV+HA+ +EK + + +K++E LK+ I Sbjct: 434 MYLSKDMTDSSLKTIGLHFGGRDHSTVIHALNTIEKKITSSNEERKKIEELKKRI 488 >gi|110639382|ref|YP_679591.1| chromosomal replication initiation protein [Cytophaga hutchinsonii ATCC 33406] gi|110282063|gb|ABG60249.1| chromosomal replication initiator protein DnaA [Cytophaga hutchinsonii ATCC 33406] Length = 471 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 257/473 (54%), Gaps = 16/473 (3%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 +C+S++ ++ VG + +WF+ ++ +++N++ + VP+ F W++ Y+ + Sbjct: 6 DCKSVWNSCLEYIRQCVGDQSFKTWFEPVEPLMLVNNVLTIQVPSQFFYEWLEEHYVHVL 65 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 K E+ +E + V + + + ++ K S I+ +I+ KQ + V Sbjct: 66 RKAIDEQLGPDGRLEYQI-LVDKNDLNRKSYGTTLHKGSIISRSINPGVSKETKQEVPAV 124 Query: 154 ---FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L++ + F TFIEG N++A +A ++A NPL ++ +VGLGKT Sbjct: 125 SQPIDSQLNASYSFDTFIEGDCNKLARSAGLAVANKPG----VTSFNPLLVYGNVGLGKT 180 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI N K + +V+Y+ +E F+ +F A+++N + + +D+L++DD+QF Sbjct: 181 HLVQAIGNQIKKNHADKKVLYMPSERFLSQFIEAMKNNQSQEFTNQFLGLDVLILDDVQF 240 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q F H+ N L S KQ++ +D P +++ L R+ SR + G+S L + DY Sbjct: 241 LSGKEKTQEIFFHIFNHLHQSGKQIIITSDCAPKDIKGLQERLLSRFKWGLSADLQVPDY 300 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +I+ + + + I +V+ ++A +V T+ R+L+G N L+ +H+ + Sbjct: 301 ETRNAIICK-----KMQFEGIEIAADVIDYLAYSVDTNMRDLEGVVNSLIAQHTLSGRQI 355 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A +++ ++V ET ++ I+ IQ+ V++++ ++ + R R +V RQVAMY Sbjct: 356 DLELAKQIIQNIVQNVET-EVNIDYIQKFVSEYFAVTIEQMKDKTRKREIVIARQVAMYF 414 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K T S IG FG RDH+TV+HA+ V +++TD + ++ L + I Sbjct: 415 TKEYTNMSLKSIGNHFGGRDHSTVIHALTSVSDLMDTDKKFRATMQDLIKKIK 467 >gi|163755431|ref|ZP_02162551.1| chromosomal replication initiator protein [Kordia algicida OT-1] gi|161324851|gb|EDP96180.1| chromosomal replication initiator protein [Kordia algicida OT-1] Length = 475 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 135/484 (27%), Positives = 245/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V +S++ S +K+ + P Y +WF+ +K + + + + VP+ F W++ Y+ Sbjct: 1 MSVTAQSVWDNCLSFIKDNIQPQAYKTWFEPIKPVKLTNKALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + +E + +++ + +PS ++ + N + Sbjct: 61 KLLKVALVKELGNTARLVYIIKMENTYGNKKPFTEKIPSANRSNVKAQEIDVPIKNKSPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFIIPGIRNVKIESQLNPNYNFDNFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTH+ AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHIAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNTRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QF GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFFSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L D+E R SI+KN+L E P +++ +VA+ + ++ REL+GA L Sbjct: 297 GLSAELQTPDFETRVSIVKNKLYRDGVEMPN-----DIVEYVAKNIKSNVRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF +T E+A +++ V +++ I+ IQ++V+ ++ + + L S R R Sbjct: 352 IAQSSFNKKEVTIELAKQVVEKFVKN-TKREVSIDYIQKVVSDYFQMDVSTLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K VE L Sbjct: 411 IVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLSSTDKQFRKYVEDLT 470 Query: 498 RLIS 501 + +S Sbjct: 471 KKLS 474 >gi|146297771|ref|YP_001192362.1| chromosomal replication initiator protein DnaA [Flavobacterium johnsoniae UW101] gi|146152189|gb|ABQ03043.1| chromosomal replication initiator protein DnaA [Flavobacterium johnsoniae UW101] Length = 475 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 143/484 (29%), Positives = 245/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +S++ S +K+ + Y +WF+ +K + N +++ VP+ F W++ Y+ Sbjct: 1 MTKTAQSVWENCLSFIKDNIQDQAYKTWFEPIKSVELTDNALYIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + +E + + ++ + LPS + P N N Sbjct: 61 KLLKVALTKELGKNAKLLYKIKMENTYGNKQPFTEQLPSSNRVPMKPQEVDAPFKNLNPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFVIPGIRNLKIESQLNPNYSFDNFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEVKDKYPEKTVLYISAEIFTQQYIDSVKKNNRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKSGTQDVFFHIFNYLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SILKN L +++ E++L +VAR + ++ REL+GA L Sbjct: 297 GLSAELHQPDYETRISILKNILYRD-----GVDMPEDILEYVARNIKSNVRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF +T E+A ++ V +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAQSSFNKKEVTIELAKSVVEKFVKN-VKREISIDYIQKIVSDYFQLDIETLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ+AM+ +K T S IG + GDRDH TVLHA + V+ ++ TD KK VE + Sbjct: 411 VVQARQLAMFFAKKFTKASLANIGSQIGDRDHATVLHACKTVDNLVSTDKQFKKFVEDIN 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|81251068|gb|ABB69872.1| DNA replication initiator protein [Nitrosospira sp. GS832] Length = 475 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 131/480 (27%), Positives = 239/480 (49%), Gaps = 26/480 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH---SVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + + ++ + +W + L+ + + + P F+ W+K+ +L Sbjct: 5 DTFWLSCLEHFEKELSAQQFNTWIKPLRLEVSHNTHESTAVVIAPNRFVMQWVKDNFLSR 64 Query: 93 ITKL----------FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 I ++ FQ + + V+ VR+V +++P + + Sbjct: 65 IEQMAGLHFPQAIRFQLKLADPISVKTTVRAVENTDAALPSATPPSDSAAFGVPVVPVQK 124 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + + S L+ F ++F+ G +N++A A +AE Y NP FI+ Sbjct: 125 FAMDAREKREKNPSRLNPSFTLNSFVTGKANQLARAGAIQVAERPGTAY-----NPFFIY 179 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAI N ++ +V Y+ +E ++ A + + K ++D+ Sbjct: 180 GGVGLGKTHLIQAIGNFVLEHNSTAKVRYIHSEQYVSDVVRAYQHKAFDDFKRYYHSLDV 239 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF GK Q EF + N+L+++ +QV+ D P E+ ++ R+ SR G+ Sbjct: 240 LLIDDIQFFGGKNRTQEEFFYAFNALIEAHRQVIITCDSYPKEISGMEERLISRFGWGLI 299 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + + EMR +IL + + + ++E V +A+ + ++ REL+GA +++ Sbjct: 300 VAVEPPELEMRVAIL-----LKKALMENIVLDENVAFFIAKHIRSNVRELEGALKRVLAY 354 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 F L+ ++A E L L+ +++ IE+IQ+ VA +Y I ++ S +R R V R Sbjct: 355 SRFTGHSLSLDLAREALKDLLAVQ-NRQISIENIQKTVADYYKIKVAEMYSKKRSRIVAR 413 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AM +SK +TP S P+IG FG RDHTTVLH RK+ ++ +D + ++ L ++ Sbjct: 414 PRQMAMAISKELTPLSLPDIGEAFGGRDHTTVLHGYRKIAELRASDPAINRDFNALLHIL 473 >gi|118590460|ref|ZP_01547862.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] gi|118436923|gb|EAV43562.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] Length = 491 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 214/493 (43%), Positives = 309/493 (62%), Gaps = 30/493 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + V +L+ ++G DV+ SWF R+ V LSVPT FLK WI+N Y + Sbjct: 5 EAGGSEQWKRVKKQLRAELGDDVFTSWFARVDLEEHQDGTVRLSVPTRFLKQWIQNNYND 64 Query: 92 TITKLFQEEHSRIQGVEILVR--------SVALPSVEKTASSPSITKLSPINTNISKSPI 143 + L+Q E + +E+ VR +A PS+ S T + + + + Sbjct: 65 QLMGLWQRECDNVHRIELTVRGAIRPRQTPIAKPSLAAPQGSKPATAENRSDALSDAAQV 124 Query: 144 ILGKQTISPV--------------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 + + + G+ LD ++ F TF+EG SN + A Sbjct: 125 TRAQAATAALGRGETSSDNARDVLQGAALDPKYTFETFVEGESNNL-----ALAAARQVA 179 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 V NPL++HASVGLGKTHL+QA+A + R +V+YLTAE+FM++F +A++ Sbjct: 180 AGGAVTFNPLYLHASVGLGKTHLMQAVA--AKARASGRKVLYLTAEHFMYKFVAALKSQS 237 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 AL K++LR IDLLLIDDMQFL GK +Q EFCH LN+L+D A+QV+ AADR PSEL++LD Sbjct: 238 ALAFKENLRTIDLLLIDDMQFLHGKQVQQEFCHTLNALIDGARQVIVAADRAPSELDTLD 297 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+RSRL GG+ V + D+ +R +IL R+ +++ P+ ++ + VL +VAR V +SGR Sbjct: 298 DRVRSRLSGGLVVGIQEPDFALRRNILATRVDTARRNYPQFDVPDSVLDYVARHVASSGR 357 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 +L+GA N+L+ + +T E+A+ L LV + E ++++IEDIQR+V+KHYN+++ D Sbjct: 358 DLEGALNRLIAHNQLTNQPITQEMAEMTLRDLVRSSEPRRVKIEDIQRVVSKHYNVTKAD 417 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 LLS RR RT+VRPRQ+AMYL+K+MTPRS PEIGRRFG+RDHTTVLHAVRK+E+M D Sbjct: 418 LLSARRTRTIVRPRQIAMYLAKVMTPRSLPEIGRRFGNRDHTTVLHAVRKIEEMARADYA 477 Query: 489 LKKEVELLKRLIS 501 L +E+ELLKR++ Sbjct: 478 LAQELELLKRMLD 490 >gi|121599001|ref|YP_994142.1| chromosomal replication initiation protein [Burkholderia mallei SAVP1] gi|126451895|ref|YP_001064388.1| chromosomal replication initiation protein [Burkholderia pseudomallei 1106a] gi|134281353|ref|ZP_01768061.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 305] gi|167001180|ref|ZP_02266979.1| chromosomal replication initiator protein DnaA [Burkholderia mallei PRL-20] gi|217423994|ref|ZP_03455494.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 576] gi|242317321|ref|ZP_04816337.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106b] gi|254184148|ref|ZP_04890739.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1655] gi|254194550|ref|ZP_04900981.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei S13] gi|254298586|ref|ZP_04966037.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 406e] gi|166201866|sp|A1V7D9|DNAA_BURMS RecName: Full=Chromosomal replication initiator protein DnaA gi|166201867|sp|A3NPW7|DNAA_BURP0 RecName: Full=Chromosomal replication initiator protein DnaA gi|121227811|gb|ABM50329.1| chromosomal replication initiator protein DnaA [Burkholderia mallei SAVP1] gi|126225537|gb|ABN89077.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106a] gi|134247020|gb|EBA47106.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 305] gi|157808658|gb|EDO85828.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 406e] gi|169651300|gb|EDS83993.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei S13] gi|184214680|gb|EDU11723.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1655] gi|217393057|gb|EEC33079.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 576] gi|242140560|gb|EES26962.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei 1106b] gi|243063007|gb|EES45193.1| chromosomal replication initiator protein DnaA [Burkholderia mallei PRL-20] Length = 533 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 146/542 (26%), Positives = 251/542 (46%), Gaps = 87/542 (16%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA----------------------LPSVEKTASSPSITKL 131 + L ++ + V+ ++ A P A +P++ Sbjct: 62 SDLARDFWNAPIEVQFVLDPKAGQRSPAGATPLAPRAPLPSANPAPVAPGPACAPAVDAH 121 Query: 132 SPINT-------------------------------------NISKSPIILGKQTISP-- 152 +P +++ G++T P Sbjct: 122 APAPAGMNAATAAAVAAAQAAQAAQANAAALNADEAADLDLPSLTAHEAAAGRRTWRPGA 181 Query: 153 -----------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 S L+ F F+ G +N++A AA +A+ Y NPLF+ Sbjct: 182 ANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFL 236 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ AI N + +P R+ Y+ AE ++ A + + K ++D Sbjct: 237 YGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLD 296 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G+ Sbjct: 297 LLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGL 356 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 +V + + EMR +IL + + + ++++E+V VA+ + ++ REL+GA +++ Sbjct: 357 TVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILA 411 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F +T E+ E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + Sbjct: 412 YSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIA 470 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ Sbjct: 471 RPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQT 530 Query: 500 IS 501 + Sbjct: 531 LK 532 >gi|58579624|ref|YP_198640.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae KACC10331] gi|71151811|sp|Q5H715|DNAA_XANOR RecName: Full=Chromosomal replication initiator protein DnaA gi|58424218|gb|AAW73255.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae KACC10331] Length = 443 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 157/468 (33%), Positives = 239/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 3 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 61 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 VAL + + +PI F Sbjct: 62 LAYFAGN--------GEVALAVGSRPRAPEPAPAPVAATIAPQAAPIAP--------FAG 105 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 106 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 161 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + +P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 162 GNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 221 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 222 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 281 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 282 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 336 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 337 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 395 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 396 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 443 >gi|160878163|ref|YP_001557131.1| chromosomal replication initiator protein DnaA [Clostridium phytofermentans ISDg] gi|226735795|sp|A9KPP1|DNAA_CLOPH RecName: Full=Chromosomal replication initiator protein DnaA gi|160426829|gb|ABX40392.1| chromosomal replication initiator protein DnaA [Clostridium phytofermentans ISDg] Length = 453 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 148/481 (30%), Positives = 262/481 (54%), Gaps = 41/481 (8%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL----KAW 84 ++ + + + LK + V Y +W LK + V N++ LSV + + Sbjct: 1 MKSLIQEKWNEILEFLKIEYNVTEVSYKTWLLPLKVYDVKDNVIKLSVDDTKIGANSLDF 60 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 IKN+Y + + E ++ +E ++ S + +P+ K + Sbjct: 61 IKNKYSQFLKTAIAEVINQDFEIEFVLLSQTKAEEKVQTQAPNKIKNESL---------- 110 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 S L+ R+ F TF+ G++N +A A+ ++AE + Y NPLFI+ Sbjct: 111 -----------SYLNPRYTFDTFVVGANNNLAHAASLAVAESPAEIY-----NPLFIYGG 154 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDL 262 VGLGKTHL+ +IA+ +++ PN +V+Y+T+E F +IR D ++ RNID+ Sbjct: 155 VGLGKTHLMHSIAHYILEQNPNSKVLYVTSEKFTNELIESIRNADTTPTEFREKYRNIDV 214 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ GK Q EF H N+L +S KQ++ ++D+PP ++ +L+ R+RSR + G++ Sbjct: 215 LLIDDIQFIIGKERTQEEFFHTFNTLHESKKQIIISSDKPPKDILTLEERLRSRFEWGLT 274 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + DYE R +ILK ++E L I++EV+ ++A + ++ REL+GA ++V Sbjct: 275 VDIQSPDYETRMAILKK-----KEELDCLTIDDEVMKYIASNIKSNIRELEGALTKIVAL 329 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + +A+E L L++ K + ++ I +V++H+ S +++ S+ R R + Sbjct: 330 SRLKKKEVDVILAEEALKDLISPDNKKTVTLDLIIEVVSEHFTTSTSEIYSDNRSRNIAY 389 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL + +T S +IG+ G+RDH+TVLH KVEK ++ D + + +++L + I Sbjct: 390 PRQIAMYLCRKLTSLSLTDIGKMMGNRDHSTVLHGCNKVEKDIKKDPSFQNTIDVLIKKI 449 Query: 501 S 501 + Sbjct: 450 N 450 >gi|84621658|ref|YP_449030.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574271|ref|YP_001911200.1| chromosomal replication initiation protein [Xanthomonas oryzae pv. oryzae PXO99A] gi|123725613|sp|Q2P9M1|DNAA_XANOM RecName: Full=Chromosomal replication initiator protein DnaA gi|226735864|sp|B2SUW3|DNAA_XANOP RecName: Full=Chromosomal replication initiator protein DnaA gi|84365598|dbj|BAE66756.1| chromosomal replication initiator [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188518723|gb|ACD56668.1| chromosomal replication initiator protein DnaA [Xanthomonas oryzae pv. oryzae PXO99A] Length = 442 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 157/468 (33%), Positives = 239/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 VAL + + +PI F Sbjct: 61 LAYFAGN--------GEVALAVGSRPRAPEPAPAPVAATIAPQAAPIAP--------FAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + +P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQAKPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|74316019|ref|YP_313759.1| chromosomal replication initiator protein DnaA [Thiobacillus denitrificans ATCC 25259] gi|74055514|gb|AAZ95954.1| chromosomal replication initiator protein, DnaA [Thiobacillus denitrificans ATCC 25259] Length = 457 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 245/470 (52%), Gaps = 25/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N +S + + R + + +++W + L F + V + P +F+ W++ ++ E I Sbjct: 10 NMDSFWDLCQERFRANLTQQQFSTWIKPLVFDD-GGDEVRILAPNHFVMDWVREKFAEHI 68 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 QE ++R + + P+ + +P + + Sbjct: 69 DSWAQEFYARPVAISYAL-----------GKKPAPARAAPAAPTANPAEPAAPAAPAPAQ 117 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 G ++ F F F+ G +N++A AA IAE Y NPLF++ VGLGKTHLL Sbjct: 118 VGMRINPGFTFDNFVSGRANQLARAAALQIAENPGVAY-----NPLFVYGGVGLGKTHLL 172 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N + P R+ Y+ A ++ A + +LK ++DLLLIDD+QFL Sbjct: 173 QAIGNTVRQTNPAARISYIHANDYVDDVVKAYLNKQFDDLKRRYMSLDLLLIDDIQFLAK 232 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF ++ NSL+++ KQ+V D P E+ LD R++SR G++V + + EMR Sbjct: 233 KDRTQEEFFYVFNSLIENKKQIVITCDTFPKEISGLDDRLKSRFAWGLTVAVEPPELEMR 292 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL +++ + ++E V +A+ V ++ REL+GA +++ F +T E Sbjct: 293 VAIL-----LAKARAESVTLDENVAFFIAKQVRSNVRELEGALKRVIAFSRFHEKPITME 347 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E L L+ + ++ + IE+IQ+ VA Y I D+ S +R R + RPRQ+AM L+K Sbjct: 348 LVKEALRDLIAS-TSRMVSIENIQKTVADFYKIKVADMFSKKRTRNLARPRQIAMALAKE 406 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTV+HA RKV ++ ET+ + ++ +L + ++ Sbjct: 407 LTNQSLPEIGESFGGRDHTTVIHACRKVAELRETEADIGRDYLVLLQTLT 456 >gi|262166785|ref|ZP_06034522.1| chromosomal replication initiator protein dnaA [Vibrio mimicus VM223] gi|262026501|gb|EEY45169.1| chromosomal replication initiator protein dnaA [Vibrio mimicus VM223] Length = 421 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 144/431 (33%), Positives = 235/431 (54%), Gaps = 21/431 (4%) Query: 81 LKAWIKNRYLETITKLFQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTN 137 + W++++YL I +L E E+ R V P ++ + S Sbjct: 1 MLDWVRDKYLNNINRLLMEFSGNDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQ 60 Query: 138 ISKSPII-----LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 +++ I S ++ + F+ F+EG SN++ L AA+ +++ Y Sbjct: 61 LAQRKPIHKTWDDDSAAADITHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY- 119 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPLF++ GLGKTHLL A+ NA + PN +VVY+ +E F+ A+++N Sbjct: 120 ----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEE 175 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R Sbjct: 176 FKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDR 235 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 ++SR G++V + + E R +IL + + ED ++++ +EV +A+ + ++ REL Sbjct: 236 LKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVREL 290 Query: 372 DGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +GA N+++ +F +T + E L L+ K + I++IQ+ VA++Y I DLL Sbjct: 291 EGALNRVIANANFTGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLL 349 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 S RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K Sbjct: 350 SKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIK 409 Query: 491 KEVELLKRLIS 501 ++ L R +S Sbjct: 410 EDYSNLIRTLS 420 >gi|328956383|ref|YP_004373769.1| chromosomal replication initiation protein [Carnobacterium sp. 17-4] gi|328672707|gb|AEB28753.1| chromosomal replication initiation protein [Carnobacterium sp. 17-4] Length = 445 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 137/470 (29%), Positives = 243/470 (51%), Gaps = 29/470 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ++++ + + K + Y +W + + N + + VP++ K + +N I Sbjct: 3 DLQTLWIFLKEKFKESLSKVSYDTWIESASPIRITDNNIIIEVPSSLHKEYWENNLATRI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + E SR ++++ + ++K+ + Sbjct: 63 VENIYEYSSREISPLFIIKNE-----------------QEASNLVNKNLRNEVPKKTLFK 105 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L++++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 106 KDIQLNTKYTFDTFVIGKGNQMAHAAALVVAEEPGTIY-----NPLFFYGGVGLGKTHLM 160 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + P+ RV Y+++E F F ++I++ ++ R++DLLL+DD+QF Sbjct: 161 HAIGHQMLLLNPDARVKYVSSETFANDFINSIQNKTQEKFRNEYRSVDLLLVDDIQFFAD 220 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L D KQ+V +DR P+E+ L R+ SR G+SV + D E R Sbjct: 221 KEGTQEEFFHTFNALYDDRKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETR 280 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + E I + L ++A + ++ REL+GA ++ + + +T Sbjct: 281 IAILRKKANAERLE-----IPGDTLSYIAGQIDSNIRELEGALVRVQAYAAIESRDITTS 335 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L ++ + + + I DIQ V+K+Y +S DL +R++++V PRQ+AMYLS+ Sbjct: 336 LAADALKSMLPSAKPTTLTILDIQNAVSKYYQLSIADLKGKKRIKSIVLPRQIAMYLSRE 395 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG FG +DHTTV+HA K+ +L TD LK+E+ +K+ ++ Sbjct: 396 LTSNSLPKIGAEFGGKDHTTVIHAYEKIVHVLSTDDQLKQEITDIKKKLT 445 >gi|254495524|ref|ZP_05108448.1| chromosomal replication initiator protein DnaA [Polaribacter sp. MED152] gi|85819880|gb|EAQ41037.1| chromosomal replication initiator protein DnaA [Polaribacter sp. MED152] Length = 475 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 140/484 (28%), Positives = 247/484 (51%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ES++T S +K+ + P Y +WF+ +K + + + VP+ F W++ Y+ Sbjct: 1 MSYTAESVWTDCLSFIKDNIKPQAYKTWFEPIKPVKLSGEALTIQVPSKFFYEWLEEHYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTA-SSPSITKLSPINTNISKSPIILGKQT 149 + + + + V+ S + + P+ P+ K+ Sbjct: 61 KLLRVALVRQLGNDAKLIYDVKMENNYSSNRPQIVKIPSSNRDPLKPQRVTVPLESNKRE 120 Query: 150 ISPVF----------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + F S L+ + F+ F+EG SNR+A +A ++A NPL Sbjct: 121 LRNPFIIPGLQKVKIESQLNPNYSFANFVEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ VGLGKTHL AI + P+ V+Y+++E F +F +++ N + + Sbjct: 177 LIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHFYQM 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SIL+N+L E + EE++ ++A+ + ++ REL+G + Sbjct: 297 GLSAELQAPDYETRISILQNKLFRDGVE-----MPEEIIEYIAKNIKSNVRELEGVIISM 351 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF + E+A +++ V K++ I+ IQ+ V+K++++ L S R R Sbjct: 352 IAQASFNRREFSIELAKQIVDKFVKN-TKKEVSIDYIQKEVSKYFDMDVATLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + ETD KK V+ L Sbjct: 411 IVQARQLAMFFAKRLTKTSLASIGNQIGQRDHATVLHACKTVDNLTETDKQFKKYVDDLT 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|315170513|gb|EFU14530.1| replication initiator protein DnaA [Enterococcus faecalis TX1342] Length = 447 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 141/470 (30%), Positives = 248/470 (52%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ES + + + + + +W + + + +N + L VP+ + + + I Sbjct: 3 DVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSAKI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E ++ G E++ V + T L+ ++ ++ +Q+ + Sbjct: 63 V----ETGFKLTGAEVMPHFVV--------ADEKDTALAQELEEPAEEEVVFSEQSKKAM 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL Sbjct: 162 HAIGHQMLVNQPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAE 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K EF H N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R Sbjct: 222 KEATLEEFFHTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + +L I ++ L ++A + ++ REL+GA ++ + +T Sbjct: 282 IAILRK-----KADAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTS 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ Sbjct: 337 LAADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLARE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG FG +DHTTV+HA K++++LE D ++KEV +K L++ Sbjct: 397 MTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLEKDPAIQKEVSEIKNLLN 446 >gi|15616642|ref|NP_239854.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681401|ref|YP_002467786.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219681957|ref|YP_002468341.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471074|ref|ZP_05635073.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11132243|sp|P57128|DNAA_BUCAI RecName: Full=Chromosomal replication initiator protein DnaA gi|254777890|sp|B8D8H7|DNAA_BUCA5 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777891|sp|B8D6T1|DNAA_BUCAT RecName: Full=Chromosomal replication initiator protein DnaA gi|25299844|pir||D84931 chromosomal replication initiator protein dnaA [imported] - Buchnera sp. (strain APS) gi|10038705|dbj|BAB12740.1| chromosomal replication initiator protein dnaA [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621690|gb|ACL29846.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624244|gb|ACL30399.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085762|gb|ADP65844.1| chromosomal replication initiation protein [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086339|gb|ADP66420.1| chromosomal replication initiation protein [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086914|gb|ADP66994.1| chromosomal replication initiation protein [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087505|gb|ADP67584.1| chromosomal replication initiation protein [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 454 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 139/467 (29%), Positives = 252/467 (53%), Gaps = 19/467 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ RL++++ ++ W + LK + +NI+ + P F+ W+K++YL + K+ Sbjct: 5 LWKQCLDRLQDELPNTEFSMWIRSLKA-KLNNNILEIYAPNKFVLEWVKDKYLNHLKKIL 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 Q+ + + + + S P + + + S Sbjct: 64 QDYCGTNSPLIKFEIYQIYKENKLKKNIENNNNNKNEKLIWSNIP-----KFKNLSYRSN 118 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++ R+ F F+EG SN++A +AA A + Y NPLF++ + GLGKTHLL AI Sbjct: 119 INKRYNFQNFVEGKSNQLARSAAFQAARNPGNSY-----NPLFLYGATGLGKTHLLHAIG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + +++++++ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 174 NEILSYKYDIKIIFMNSECFVQDMVKALKNNAIEKFKLYYRSVDALLIDDIQFFAHKERS 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L++ +Q++ +DR P E+ ++ R++SR G+++ + + E R +IL Sbjct: 234 QEEFFHTFNTLIEGNQQIILTSDRYPKEINGVEDRLKSRFSWGLTIAIDPPEIETRVAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADE 395 I + + + ++ EV +A+ + ++ REL+GA N+++ F +T + A E Sbjct: 294 -----IKKADQNNVILSNEVAFFIAKHLRSNVRELEGALNRVILNSRFTHRAITVDFARE 348 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++ K + I++IQ+ VAK+Y I +DLLS +R R++ RPRQ+AM ++K +T Sbjct: 349 ALQDILAVQ-EKIITIDNIQKTVAKYYKIKVSDLLSKKRSRSIARPRQMAMAMAKKLTNH 407 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA K+E++ + + +KK+ L R +S+ Sbjct: 408 SLPEIGEAFSGRDHTTVLHACCKIEQLRKENHDIKKDFLNLIRTLSK 454 >gi|126663416|ref|ZP_01734413.1| chromosomal replication initiator protein [Flavobacteria bacterium BAL38] gi|126624364|gb|EAZ95055.1| chromosomal replication initiator protein [Flavobacteria bacterium BAL38] Length = 475 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 140/484 (28%), Positives = 247/484 (51%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +S++ S +K+ + + +WF+ ++ + N + + VP+ F W++ Y+ Sbjct: 1 MTKTAQSVWNNCLSFIKDNIQDQAFKTWFEPIQSVELNDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + +E + + ++ + +PS +TA P + N N Sbjct: 61 KLLKVALTKELGQGAKLLYKIKMENTYGNKLPFTEQIPSYNRTAVKPQEVDVPIANKNPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L++ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFVIPGIRNLKIESQLNANYSFDNFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEIFTQQYIDSVKKNTRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SILKN L E I +E++ +VA+ + ++ REL+GA L Sbjct: 297 GLSAELHQPDYETRISILKNILFRDGVE-----IPDEIVEYVAKNIKSNVRELEGAIISL 351 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF + E+A +++ V +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAQSSFNKREVNLELAKQVVEKFVKN-VKREISIDYIQKIVSDYFQLDIETLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ+AM+ +K T S IG + GDRDH TVLHA + V+ ++ TD +K V+ + Sbjct: 411 VVQARQLAMFFAKKFTKASLANIGSQIGDRDHATVLHACKTVDNLVTTDKQFRKFVDDIN 470 Query: 498 RLIS 501 + +S Sbjct: 471 KKLS 474 >gi|298209110|ref|YP_003717289.1| chromosomal replication initiation protein [Croceibacter atlanticus HTCC2559] gi|83849037|gb|EAP86906.1| chromosomal replication initiation protein [Croceibacter atlanticus HTCC2559] Length = 475 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 136/483 (28%), Positives = 242/483 (50%), Gaps = 23/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ E+I+ S +K+ + P Y +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MQKTAETIWGNCLSFIKDNITPQAYKTWFEPIKAVKLTDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEK--TASSPSITKLSPINTNISKSPIILGKQ 148 + + +E + ++R ++ T S PS + + + + Sbjct: 61 KLLKVALNKELGDTAKLVYVIRMENTYGNKQPFTESIPSSQRAQMQSQQVDVPTKSKSPE 120 Query: 149 TISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P S L+ + F +F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFIIPGIRNVKIESQLNPNYNFESFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQI 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L D+E R +I+K++L E + E+++ +A + T+ REL+GA L Sbjct: 297 GLSAELQHPDFETRIAIIKSKLYRDGVE-----MPEDIVEFLANNIKTNIRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + SF +T E+A ++ + V +++ I+ IQ++V ++ + L S R R Sbjct: 352 IAHSSFNKKDITLELAKSIVDNYVKN-TKREVSIDYIQKVVGDYFQMDVETLRSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V + TD +K VE L Sbjct: 411 IVQARQLAMFFAKKLTKASLASIGSQIGKRDHATVLHACKTVNNLAATDKQFRKFVEDLD 470 Query: 498 RLI 500 + + Sbjct: 471 KKL 473 >gi|110807608|ref|YP_691128.1| chromosomal replication initiation protein [Shigella flexneri 5 str. 8401] gi|110617156|gb|ABF05823.1| chromosomal replication initiation protein [Shigella flexneri 5 str. 8401] Length = 443 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 138/457 (30%), Positives = 228/457 (49%), Gaps = 27/457 (5%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFI 168 V S+ + +P P + S ++ + F F+ Sbjct: 60 VTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA+ +A+ Y NPLF++ GLGKTHLL A+ N + R+PN + Sbjct: 120 EGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLL 288 VVY+ +E F+ A+++N K R++D LLIDD+QF I+++ ++ Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA---IKNDLRKSFSTPF 231 Query: 289 DSAKQVVAAADRPPSELE---SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +V S E ++ R++SR G++V + + E R +IL + + Sbjct: 232 TPCWKVSTDHSHLGSLFERDNGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKA 286 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTG 404 ++ + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 287 DENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ 346 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG F Sbjct: 347 -EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAF 405 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 406 GGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 442 >gi|289667649|ref|ZP_06488724.1| chromosomal replication initiation protein [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 442 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 156/468 (33%), Positives = 239/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + E + S + + + I P F Sbjct: 61 LAYFCG---------------NGEVALAVGSRPRAPEPAPAPVAAAVAPQAAPIVP-FAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|332519668|ref|ZP_08396132.1| chromosomal replication initiator protein DnaA [Lacinutrix algicola 5H-3-7-4] gi|332044227|gb|EGI80421.1| chromosomal replication initiator protein DnaA [Lacinutrix algicola 5H-3-7-4] Length = 475 Score = 454 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 135/484 (27%), Positives = 246/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +S++ + +K+ + P Y +WF+ + + N + + VP+ F W++ Y+ Sbjct: 1 MSITAQSVWNNCLNFIKDNIQPQAYKTWFEPIIAVKLTDNALSVQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + +E + +++ + +PS ++A + N + Sbjct: 61 KILKVALTKELGETAKLVYIIKMENTYGNKQPFTEKIPSSNRSAVKAQDVDVPLKNKDRE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A +++ NPL Sbjct: 121 LRNPFVIPGIRNVKIESQLNPSYNFDNFLEGDSNRLARSAGLAVSAKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIDSVKKNNRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLVIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L D+E R SILKN+L E + E+++ +VA+ + ++ REL+GA L Sbjct: 297 GLSAELQTPDFETRVSILKNKLYRDGVE-----MPEDIIEYVAKNIKSNIRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF + E+A +++ V +++ I+ IQ++V+ ++ + + L S R R Sbjct: 352 IAQSSFNKKEINIELAKQVVEKFVKN-TKREVSIDYIQKVVSDYFQMDVDTLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K VE L Sbjct: 411 IVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLSSTDKQFRKYVEDLT 470 Query: 498 RLIS 501 + +S Sbjct: 471 KKLS 474 >gi|312126263|ref|YP_003991137.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor hydrothermalis 108] gi|311776282|gb|ADQ05768.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor hydrothermalis 108] Length = 454 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 149/480 (31%), Positives = 250/480 (52%), Gaps = 39/480 (8%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPD----VYASWFQRLKFHSVLHN-IVHLSVPTNFLKAW 84 +E + ++ + +K ++ P Y +WF+ L N + L +F + Sbjct: 1 MVEYDVNEVWEKIKEAVKKEINPSPTDISYNTWFESLVPLCFDDNDTLILKAFADFHRDI 60 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + NRY I ++ S +++++ + + Sbjct: 61 VINRYSLVILNALRQLFSPHLSIKVILPEEVEKYKK----------------------FL 98 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 KQ P + L+ ++ F TF+ G++NR+A AA ++AE NPLFI+ Sbjct: 99 KPKQDEKPEIVTQLNPKYTFETFVVGNNNRLAHAAALAVAETP---PGERTYNPLFIYGG 155 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LL Sbjct: 156 VGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLL 215 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ Sbjct: 216 IDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITD 275 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +IL + + + + +L +A + T+ REL+GA N+++ Sbjct: 276 IQPPDFETRIAILSKKCQLEGT-----PVPQHILEFIASKIETNIRELEGALNKILAYSK 330 Query: 384 FA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +T E+A++ L ++T K++ IEDIQ VA ++ I D S+RR R V Sbjct: 331 LMAPDKEITLELAEKALKEFIDTNTKKELTIEDIQAEVASYFGIRLEDFKSSRRSRNVAY 390 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ TD + VE +K+ + Sbjct: 391 PRQIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINTDSNTRNAVETIKKRL 450 >gi|88606838|ref|YP_505074.1| chromosomal replication initiation protein [Anaplasma phagocytophilum HZ] gi|88597901|gb|ABD43371.1| chromosomal replication initiator protein DnaA [Anaplasma phagocytophilum HZ] Length = 459 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 168/464 (36%), Positives = 268/464 (57%), Gaps = 20/464 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V +L++ G Y SW L + + V L VPT F+K WI YLE I + ++ Sbjct: 13 WQSVQKKLRDFYGSAAYDSWLSALVYSGYENGRVILLVPTRFIKEWILVHYLEKILEYWR 72 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E+S + ++I V A SV + S+ S + + SPL Sbjct: 73 GENSAVYCIDICVADGAESSVLQGNRGVSV---------RSTEAQEVSSVSTYEHLSSPL 123 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F F+ G N +A AA+ +AE + NPLF++ VGLGKTHL+ AIA Sbjct: 124 DPRFTFDNFVVGKPNELAFAAARRVAESSEPIPGS---NPLFLYGGVGLGKTHLMHAIAW 180 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 ++ ++ YL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Q Sbjct: 181 YALGSPRKRKIAYLSAEKFMYQYVTALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDSTQ 240 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D +KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 241 EEFFHTFNALIDQSKQLVISADRSPSDLDGVEDRIKSRLGWGLVADINETTFELRLGILQ 300 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 + E +++ +EVL +A+ + ++ REL+GA N++V S +T E+A ++ Sbjct: 301 -----LKVEKMGIHVPDEVLEFLAKNIKSNIRELEGALNKVVAHSSLVGSSVTVELASDI 355 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 LS L+ + + I+ IQ+ VA+ + I D+ S RR+R + RPRQVAMYLSK +T +S Sbjct: 356 LSDLLRANH-RLVTIDAIQKKVAEFFGIRLEDMYSARRLRALARPRQVAMYLSKRLTQKS 414 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 P+IG+ FG RDH TV+HAV++VEK ++TD L ++ LL R++ Sbjct: 415 LPDIGKSFGGRDHATVIHAVKQVEKFIDTDSKLAGDISLLIRML 458 >gi|172038580|ref|YP_001805081.1| chromosomal replication initiation protein [Cyanothece sp. ATCC 51142] gi|254777898|sp|B1X0X6|DNAA_CYAA5 RecName: Full=Chromosomal replication initiator protein DnaA gi|171700034|gb|ACB53015.1| chromosomal replication initiator protein [Cyanothece sp. ATCC 51142] Length = 455 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 140/473 (29%), Positives = 240/473 (50%), Gaps = 27/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + I+ V RLK ++ P Y +W + N + + V F+ ++ Y Sbjct: 1 MTISPQYIWNQVLDRLKLRLNPTAYETWIASATVQTFQDNCLVIQVENPFILNHLQKTYY 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + + V++ T+ ++ + N+S + + +Q Sbjct: 61 SLILEEVETIVGYPIAVKLT-----------TSQEQNLRIVDKNKDNLSSTKLQNKRQQE 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 SP L+ R+ FS F+ G +NR+A A+ ++AE NPLF+ VGLGKT Sbjct: 110 SPKLN-QLNPRYNFSRFVVGPTNRMAHAASLAVAESPGR-----EFNPLFLCGGVGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA ++ PN V Y++ E F ++IR + N ++ R D+LL+DD+QF Sbjct: 164 HLMQAIAYYRLELYPNANVFYVSTEQFTNDLITSIRQDSMENFREHYRTADILLVDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP + SL R+ SR G+ + + D Sbjct: 224 IEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKRIPSLQDRLVSRFSMGLIADIQVPDL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + + +V+ ++A T++ REL+GA + V ++ I Sbjct: 284 ETRMAILQK-----KAEYENIRLPRDVIEYIATNYTSNIRELEGALIRAV---TYISISG 335 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++N + E I ++VA+++N+S DL + R R + RQ+ MYL Sbjct: 336 LSMTVENIAPVLNPPMEQITASPEIIIQIVAENFNVSVEDLKGSSRRREISLARQIGMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTVL++ K+ K+ + D L +++ L I+ Sbjct: 396 MRQHTDLSLPRIGEEFGGKDHTTVLYSCDKISKLQKKDWDLSQQLSELSDRIN 448 >gi|320449107|ref|YP_004201203.1| chromosomal replication initiator protein DnaA [Thermus scotoductus SA-01] gi|320149276|gb|ADW20654.1| chromosomal replication initiator protein DnaA [Thermus scotoductus SA-01] Length = 447 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 148/471 (31%), Positives = 255/471 (54%), Gaps = 36/471 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E+++ + ++ + + +WF+R++ + ++ L+VPT+F WIK Y E Sbjct: 11 LTHEAVWQHILEHIRRNITEVEFHTWFERIRPLGIQDGVLQLAVPTSFALDWIKRHYAEL 70 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + ++ E+ V + + P Sbjct: 71 IQEALGLLGAQPPRFELKVVPSVAVQEDIFHTPAPSEAAKP------------------- 111 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 112 ----NLNPKYTFENFVVGPNNSMAHAAAVAVAESPGRAY-----NPLFIYGGVGLGKTHL 162 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ ++ KR P+L++ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ Sbjct: 163 MHAVGHSVAKRFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDIQFIA 222 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D E Sbjct: 223 GKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLET 282 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK E L I+EEVL ++AR VT++ REL+GA + + S + LT Sbjct: 283 RIAILK-----MNAEQRGLRISEEVLEYIARQVTSNIRELEGALMRTIAYASLNGVELTR 337 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + LS + + ++ +I R VA+++ + DL+ R + VV PRQ+AM+L + Sbjct: 338 AVAAKALSDIFASK-EVEVDPHEIVRKVAEYFALRPEDLVGGGRRKEVVLPRQIAMFLVR 396 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG+ FG RDHTTVL+A++KV+++ E+D ++K + LK ++ Sbjct: 397 ELTRSSLPEIGQLFGGRDHTTVLYAIQKVQELSESDREVQKLLRSLKEALT 447 >gi|291548768|emb|CBL25030.1| chromosomal replication initiator protein DnaA [Ruminococcus torques L2-14] Length = 456 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 138/476 (28%), Positives = 243/476 (51%), Gaps = 36/476 (7%) Query: 36 ESIFTIVSSRLKNQV--GPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E + V +++K + Y +W L + V N V++ V I+++YL Sbjct: 5 EQNWDQVLNKMKLEYCSSNISYTTWIAPLTVYEVKDNTVYILVKLKASLEHIQDKYLLP- 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F+ + + G E V V S + + +N K+ Sbjct: 64 ---FKVCIAEVTGTEYEVEFVTDSPKVIKEKKESSVQKTRVNAIYEKA------------ 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS+N A A+ ++AE Y NPLF++ VGLGKTHL+ Sbjct: 109 ---NLNPKYTFDTFVVGSNNNFAHAASLAVAESPGEIY-----NPLFLYGGVGLGKTHLM 160 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC------ALNLKDSLRNIDLLLIDD 267 ++A+ ++ P+ +V+Y+T+E F A++ ++ RN D+LLIDD Sbjct: 161 HSVAHYILEHDPSKKVLYVTSETFTNELIDALKVGKNGNELAMTTFREKYRNNDVLLIDD 220 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + Sbjct: 221 IQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISS 280 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE R +IL+ + + E K +I +EV+ ++A + ++ REL+G+ N+L+ + Sbjct: 281 PDYETRMAILRKKEELDGLE--KYHIPDEVMQYIANNIKSNIRELEGSLNKLIALSNLEN 338 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A E L +++ +T+ + E I +V++H+N+ +L +R +V PRQ+ Sbjct: 339 KPIDIPLAAEALKDMISPDDTRAVSPELIMDVVSEHFNVPVTELKGKKRNAEIVLPRQIV 398 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + MT IG G +DH ++ H VRK+E L+TD L V ++K+ I+ Sbjct: 399 MYLCRNMTDTPLKSIGALLGGKDHASISHGVRKIENDLKTDEALNNTVNIIKKKIN 454 >gi|88803646|ref|ZP_01119170.1| chromosomal replication initiation protein [Polaribacter irgensii 23-P] gi|88780379|gb|EAR11560.1| chromosomal replication initiation protein [Polaribacter irgensii 23-P] Length = 475 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 137/484 (28%), Positives = 249/484 (51%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ ES++ +K+ + P Y +WF+ +K + + + VP+ F W++ Y+ Sbjct: 1 MTLSSESVWNECLIFIKDNIKPQAYKTWFEPIKPVKLSGESLTIQVPSKFFYEWLEEHYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTA--SSPSITKLSPINTNISKSPIILGKQ 148 + + + + V+ S + PS + N++ S ++ Sbjct: 61 KLLRVALVRQLGSDAKLIYDVKMENNYSSNRPQIVKIPSSNRNPLKPQNVTVSLDSGKRE 120 Query: 149 TISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P S L+ + F+ F+EG SNR+A +A ++A NPL Sbjct: 121 LRNPFVIPGLQKVKIESQLNPNYNFANFVEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ VGLGKTHL AI + P+ V+Y+++E F +F +++ N + + Sbjct: 177 LIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHFYQM 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SIL+N+L E + E+++ ++A+ + ++ REL+G + Sbjct: 297 GLSAELQAPDYETRISILQNKLFRDGVE-----MPEDIVGYIAKNIKSNVRELEGVIISM 351 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF + E+A +++ V K++ I+ IQ+ V+K++++ L S R R Sbjct: 352 IAQASFNRREFSLELAKQIVDKFVKN-TKKEVSIDYIQKEVSKYFDMDVATLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + ETD +K V+ L Sbjct: 411 IVQARQLAMFFAKRLTKTSLASIGNQIGQRDHATVLHACKTVDNLTETDKQFRKYVDDLT 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|29374662|ref|NP_813814.1| chromosomal replication initiation protein [Enterococcus faecalis V583] gi|227518108|ref|ZP_03948157.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX0104] gi|227555685|ref|ZP_03985732.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis HH22] gi|229547129|ref|ZP_04435854.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX1322] gi|229550699|ref|ZP_04439424.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis ATCC 29200] gi|255971549|ref|ZP_05422135.1| chromosomal replication initiator protein [Enterococcus faecalis T1] gi|255974522|ref|ZP_05425108.1| chromosomal replication initiator protein [Enterococcus faecalis T2] gi|256618527|ref|ZP_05475373.1| chromosomal replication initiator protein [Enterococcus faecalis ATCC 4200] gi|256761854|ref|ZP_05502434.1| chromosomal replication initiator protein [Enterococcus faecalis T3] gi|256854981|ref|ZP_05560342.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis T8] gi|256957015|ref|ZP_05561186.1| chromosomal replication initiator protein [Enterococcus faecalis DS5] gi|256960824|ref|ZP_05564995.1| chromosomal replication initiator protein [Enterococcus faecalis Merz96] gi|256963983|ref|ZP_05568154.1| chromosomal replication initiator protein [Enterococcus faecalis HIP11704] gi|257078692|ref|ZP_05573053.1| chromosomal replication initiator protein [Enterococcus faecalis JH1] gi|257081347|ref|ZP_05575708.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis E1Sol] gi|257084004|ref|ZP_05578365.1| chromosomal replication initiator protein [Enterococcus faecalis Fly1] gi|257087834|ref|ZP_05582195.1| chromosomal replication initiator protein [Enterococcus faecalis D6] gi|257088486|ref|ZP_05582847.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis CH188] gi|257417426|ref|ZP_05594420.1| chromosomal replication initiator protein [Enterococcus faecalis AR01/DG] gi|257418842|ref|ZP_05595836.1| chromosomal replication initiator protein [Enterococcus faecalis T11] gi|257421343|ref|ZP_05598333.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis X98] gi|293382662|ref|ZP_06628590.1| ATPase [Enterococcus faecalis R712] gi|293387926|ref|ZP_06632462.1| ATPase [Enterococcus faecalis S613] gi|294781248|ref|ZP_06746595.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis PC1.1] gi|300861740|ref|ZP_07107820.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TUSoD Ef11] gi|307268916|ref|ZP_07550280.1| replication initiator protein DnaA [Enterococcus faecalis TX4248] gi|307274012|ref|ZP_07555222.1| replication initiator protein DnaA [Enterococcus faecalis TX0855] gi|307276499|ref|ZP_07557619.1| replication initiator protein DnaA [Enterococcus faecalis TX2134] gi|307284059|ref|ZP_07564229.1| replication initiator protein DnaA [Enterococcus faecalis TX0860] gi|307287182|ref|ZP_07567253.1| replication initiator protein DnaA [Enterococcus faecalis TX0109] gi|307296590|ref|ZP_07576410.1| replication initiator protein DnaA [Enterococcus faecalis TX0411] gi|312908814|ref|ZP_07767753.1| replication initiator protein DnaA [Enterococcus faecalis DAPTO 512] gi|312951720|ref|ZP_07770614.1| replication initiator protein DnaA [Enterococcus faecalis TX0102] gi|312979544|ref|ZP_07791226.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis DAPTO 516] gi|38257441|sp|Q839Z5|DNAA_ENTFA RecName: Full=Chromosomal replication initiator protein DnaA gi|29342120|gb|AAO79886.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis V583] gi|227074442|gb|EEI12405.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX0104] gi|227175195|gb|EEI56167.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis HH22] gi|229304132|gb|EEN70128.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis ATCC 29200] gi|229307711|gb|EEN73698.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TX1322] gi|255962567|gb|EET95043.1| chromosomal replication initiator protein [Enterococcus faecalis T1] gi|255967394|gb|EET98016.1| chromosomal replication initiator protein [Enterococcus faecalis T2] gi|256598054|gb|EEU17230.1| chromosomal replication initiator protein [Enterococcus faecalis ATCC 4200] gi|256683105|gb|EEU22800.1| chromosomal replication initiator protein [Enterococcus faecalis T3] gi|256709494|gb|EEU24541.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis T8] gi|256947511|gb|EEU64143.1| chromosomal replication initiator protein [Enterococcus faecalis DS5] gi|256951320|gb|EEU67952.1| chromosomal replication initiator protein [Enterococcus faecalis Merz96] gi|256954479|gb|EEU71111.1| chromosomal replication initiator protein [Enterococcus faecalis HIP11704] gi|256986722|gb|EEU74024.1| chromosomal replication initiator protein [Enterococcus faecalis JH1] gi|256989377|gb|EEU76679.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis E1Sol] gi|256992034|gb|EEU79336.1| chromosomal replication initiator protein [Enterococcus faecalis Fly1] gi|256995864|gb|EEU83166.1| chromosomal replication initiator protein [Enterococcus faecalis D6] gi|256997298|gb|EEU83818.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis CH188] gi|257159254|gb|EEU89214.1| chromosomal replication initiator protein [Enterococcus faecalis ARO1/DG] gi|257160670|gb|EEU90630.1| chromosomal replication initiator protein [Enterococcus faecalis T11] gi|257163167|gb|EEU93127.1| chromosomal replication initiator protein dnaA [Enterococcus faecalis X98] gi|291079968|gb|EFE17332.1| ATPase [Enterococcus faecalis R712] gi|291082663|gb|EFE19626.1| ATPase [Enterococcus faecalis S613] gi|294451711|gb|EFG20166.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis PC1.1] gi|295112341|emb|CBL30978.1| chromosomal replication initiator protein DnaA [Enterococcus sp. 7L76] gi|300848265|gb|EFK76022.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis TUSoD Ef11] gi|306495926|gb|EFM65514.1| replication initiator protein DnaA [Enterococcus faecalis TX0411] gi|306501780|gb|EFM71071.1| replication initiator protein DnaA [Enterococcus faecalis TX0109] gi|306503430|gb|EFM72679.1| replication initiator protein DnaA [Enterococcus faecalis TX0860] gi|306506826|gb|EFM75976.1| replication initiator protein DnaA [Enterococcus faecalis TX2134] gi|306509320|gb|EFM78380.1| replication initiator protein DnaA [Enterococcus faecalis TX0855] gi|306514724|gb|EFM83275.1| replication initiator protein DnaA [Enterococcus faecalis TX4248] gi|310625252|gb|EFQ08535.1| replication initiator protein DnaA [Enterococcus faecalis DAPTO 512] gi|310630293|gb|EFQ13576.1| replication initiator protein DnaA [Enterococcus faecalis TX0102] gi|311287726|gb|EFQ66282.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis DAPTO 516] gi|315026677|gb|EFT38609.1| replication initiator protein DnaA [Enterococcus faecalis TX2137] gi|315030122|gb|EFT42054.1| replication initiator protein DnaA [Enterococcus faecalis TX4000] gi|315033557|gb|EFT45489.1| replication initiator protein DnaA [Enterococcus faecalis TX0017] gi|315036380|gb|EFT48312.1| replication initiator protein DnaA [Enterococcus faecalis TX0027] gi|315143595|gb|EFT87611.1| replication initiator protein DnaA [Enterococcus faecalis TX2141] gi|315148267|gb|EFT92283.1| replication initiator protein DnaA [Enterococcus faecalis TX4244] gi|315151291|gb|EFT95307.1| replication initiator protein DnaA [Enterococcus faecalis TX0012] gi|315153717|gb|EFT97733.1| replication initiator protein DnaA [Enterococcus faecalis TX0031] gi|315155123|gb|EFT99139.1| replication initiator protein DnaA [Enterococcus faecalis TX0043] gi|315158747|gb|EFU02764.1| replication initiator protein DnaA [Enterococcus faecalis TX0312] gi|315163331|gb|EFU07348.1| replication initiator protein DnaA [Enterococcus faecalis TX0645] gi|315165728|gb|EFU09745.1| replication initiator protein DnaA [Enterococcus faecalis TX1302] gi|315168220|gb|EFU12237.1| replication initiator protein DnaA [Enterococcus faecalis TX1341] gi|315174182|gb|EFU18199.1| replication initiator protein DnaA [Enterococcus faecalis TX1346] gi|315573991|gb|EFU86182.1| replication initiator protein DnaA [Enterococcus faecalis TX0309B] gi|315578839|gb|EFU91030.1| replication initiator protein DnaA [Enterococcus faecalis TX0630] gi|315581942|gb|EFU94133.1| replication initiator protein DnaA [Enterococcus faecalis TX0309A] gi|323479240|gb|ADX78679.1| chromosomal replication initiator protein DnaA [Enterococcus faecalis 62] gi|327533854|gb|AEA92688.1| ATPase [Enterococcus faecalis OG1RF] Length = 447 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 140/470 (29%), Positives = 247/470 (52%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ES + + + + + +W + + + +N + L VP+ + + + I Sbjct: 3 DVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSAKI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E ++ G E++ V + L+ ++ ++ +Q+ + Sbjct: 63 V----ETGFKLTGAEVMPHFVV--------ADEKDAALAQELEEPAEEEVVFSEQSKKAM 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL Sbjct: 162 HAIGHQMLVNQPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAE 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K EF H N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R Sbjct: 222 KEATLEEFFHTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + +L I ++ L ++A + ++ REL+GA ++ + +T Sbjct: 282 IAILRK-----KADAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTS 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ Sbjct: 337 LAADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLARE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG FG +DHTTV+HA K++++LE D ++KEV +K L++ Sbjct: 397 MTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLEKDPAIQKEVSEIKNLLN 446 >gi|300689715|ref|YP_003750710.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum PSI07] gi|299076775|emb|CBJ49382.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum PSI07] Length = 525 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 143/534 (26%), Positives = 241/534 (45%), Gaps = 79/534 (14%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYLETI 93 + + S++L++++ P + +W + L S L + P F W+K+++ I Sbjct: 2 QDFWHAASAQLESELTPQQFKTWIKPLAPLSFDEQACTLRIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA-------LPSVEKTASSPSITKLSPINT---------- 136 L + V+ ++ A P++ P + P Sbjct: 62 QSLACDYWEMQVDVQFVLDPTAGQRQAAMQPALAPVPMQPPAAQSIPAQATPAMRHEAPA 121 Query: 137 ---------------------------------------NISKSPIILGKQTISPVF--- 154 +P ++ + PV Sbjct: 122 RPTAAPYRGTAMATATHAVADIDVPVMDAAEASAQSYRMPAPAAPAVVTGLSAPPVAPVD 181 Query: 155 -----GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S L+ F + G +N++A AA +A Y NPL+++ VGLGK Sbjct: 182 DTVHERSRLNPILTFDNLVTGKANQLARAAAVQVANNPGKSY-----NPLYLYGGVGLGK 236 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI N + P R+ Y+ AE ++ A + + K ++DLLLIDD+Q Sbjct: 237 THLIHAIGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQ 296 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + Sbjct: 297 FFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPE 356 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 EMR +IL + + + + + EEV VA+ + ++ REL+GA +++ +F Sbjct: 357 LEMRVAIL-----MKKAQAENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKE 411 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+ E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMY Sbjct: 412 ITIEVTREALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMY 470 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 471 LAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 524 >gi|257871389|ref|ZP_05651042.1| chromosomal replication initiator protein [Enterococcus gallinarum EG2] gi|257805553|gb|EEV34375.1| chromosomal replication initiator protein [Enterococcus gallinarum EG2] Length = 445 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 247/469 (52%), Gaps = 30/469 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + +SI+ + K ++ P Y++W + S N + + VP++ K++ + I Sbjct: 3 SADSIWRDLQKSFKEELNPASYSAWIETANILSFEKNQLLIEVPSDLHKSYWEKNLAAKI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E G E++ V E SPS+ + I Sbjct: 63 V----EMGFMKTGEELIPSFVTAEEAEALQKSPSVEQTVTEKAEKKGKTI---------- 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 109 ----LNEKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 159 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + ++PN ++ Y+++E F F ++I+ N + ++ RN+DLLL+DD+QFL Sbjct: 160 HAIGHQMLLKRPNAKIKYVSSENFTNDFITSIQKNKMEDFRNEYRNVDLLLVDDIQFLVN 219 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + L + KQ+V +DR P+E+ +L R+ SR G+SV + D E R Sbjct: 220 KEGTQEEFFNTFEELYRNNKQIVLTSDRLPNEIPTLPERLVSRFAWGLSVDITPPDLETR 279 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + E +L I ++ L ++A + ++ REL+GA ++ + +T Sbjct: 280 TAILRK-----KAEAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATMQNSDITTS 334 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E + L ++ + ++ I IQ VAK+Y+I NDL +RV+ +V PRQ+AM+LS+ Sbjct: 335 LAAEAIKALKSSHGSTQVSILQIQEEVAKYYHIHINDLKGKKRVKGIVVPRQIAMFLSRE 394 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTV+HA K++ + ETD T+K E+ +K ++ Sbjct: 395 LTDNSLPKIGAEFGGKDHTTVIHAHEKIQHLSETDPTIKNEISEIKNIL 443 >gi|289662284|ref|ZP_06483865.1| chromosomal replication initiation protein [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 442 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 156/468 (33%), Positives = 239/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + E + S + + + I P F Sbjct: 61 LAYFCG---------------NGEVALAVGSRPRAPEPAPAPVAAALAPQAAPIVP-FAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|206895387|ref|YP_002246434.1| chromosomal replication initiator protein DnaA [Coprothermobacter proteolyticus DSM 5265] gi|206738004|gb|ACI17082.1| chromosomal replication initiator protein DnaA [Coprothermobacter proteolyticus DSM 5265] Length = 543 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 250/473 (52%), Gaps = 36/473 (7%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ + ++ ++ V + WF+ S+ + V +SV ++ K +I+ Y+ Sbjct: 102 NMDPKELWKRFLLEIQKYVSKPAFEMWFKDSAIDSLSEDKVTISVSSDTAKDYIEENYMP 161 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + VE++V+ P V S +P+ GK Sbjct: 162 IVKEALRRITGMALEVEVIVQKKNTPDV------------------FSDNPVKKGK---- 199 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P L+ R+ F F+ G SNR+A A+++AE R NPLFI VGLGKTH Sbjct: 200 PKSLIRLNPRYTFDEFVVGDSNRLAYAGARAVAENPGK-----RFNPLFIWGGVGLGKTH 254 Query: 212 LLQAIANASIKRQ-PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 LL AI N +++Q P+++V+Y+TAE F +I+ N + + R +D+LLIDD+QF Sbjct: 255 LLHAIGNYLLQQQEPDMQVLYITAEEFTNEMVESIKKNSPEDFRAHYRTVDVLLIDDIQF 314 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L + KQ+V +D PP EL L+ R+RSR Q G++V + D+ Sbjct: 315 IAGKEATQTEFFHTFNTLYQAGKQIVITSDHPPQELTLLEDRLRSRFQQGLTVDIQRPDF 374 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +IL+ + + L++ EV+ +A V T+ REL+GA ++ + + + Sbjct: 375 ETRVAILER-----KAQKEGLDVPSEVIEFIAHAVATNIRELEGALTKVTALATLQNVPM 429 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A + L VNT ++ + + I VA ++ ++ DL S++R + +V PRQ+AMYL Sbjct: 430 TLGLAKQALGD-VNTNQSAVLNAQTIAEQVASYFGMTLEDLKSSKRNQDLVMPRQIAMYL 488 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S+PEI F +DHTTV++A+ K++ +++++ V +K+ ++ Sbjct: 489 IRQYTDMSYPEIAAFFNKKDHTTVMYAITKIKDAQLNNVSIRHYVNDIKKRLN 541 >gi|197302268|ref|ZP_03167327.1| hypothetical protein RUMLAC_00995 [Ruminococcus lactaris ATCC 29176] gi|197298699|gb|EDY33240.1| hypothetical protein RUMLAC_00995 [Ruminococcus lactaris ATCC 29176] Length = 456 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 134/473 (28%), Positives = 246/473 (52%), Gaps = 36/473 (7%) Query: 39 FTIVSSRLKNQV--GPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + +++K + Y +W L + V N V++ V I+ +YL Sbjct: 8 WNQILNKMKQEYCSSNIAYNTWVAPLTVYEVKDNTVYILVKLKASLEHIEEKYLLP---- 63 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F+ + I GVE V V + K + +N K+ Sbjct: 64 FKVCIAEITGVEYEVAFVTENTAVIQEKKDIAVKNTRVNAIYEKA--------------- 108 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ ++ F TF+ GS+NR A A+ ++AE Y NPLF++ VGLGKTHL+ ++ Sbjct: 109 NLNPKYTFDTFVVGSNNRFAHAASVAVAESPGESY-----NPLFLYGGVGLGKTHLMHSV 163 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIR------DNCALNLKDSLRNIDLLLIDDMQF 270 A+ +K P+ +V+Y+T+E F A++ + + ++ RN D+LLIDD+QF Sbjct: 164 AHYILKHDPSKKVLYVTSETFTNELIEALKVGKNGNEMAMTSFREKYRNNDVLLIDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N+L + KQ++ ++D+PP ++E+L+ R+R+R + G+ + DY Sbjct: 224 IIGKESTQEEFFHTFNNLHLAGKQIIISSDKPPKDMETLEARLRTRFEWGMIADISSPDY 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + + E K +I +EV+ ++A + ++ REL+G+ N+L+ + + Sbjct: 284 ETRMAILRKKEELDGLE--KYHIPDEVMQYIANNIKSNIRELEGSLNKLIALSNLENKPI 341 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 +A E L +++ + + + E I +V++H+N+ +L +R +V PRQ+ MYL Sbjct: 342 DIPLAAEALKDMISPDDNRAVSPELIIEVVSEHFNVPVAELKGKKRNAEIVLPRQIVMYL 401 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT IG G +DH ++ H V+K+E+ ++TD L + ++++ I+ Sbjct: 402 CRNMTDTPLKSIGALLGGKDHASISHGVKKIEQDMKTDEALNNTINIIRKKIN 454 >gi|46199910|ref|YP_005577.1| chromosomal replication initiator protein dnaA [Thermus thermophilus HB27] gi|46197537|gb|AAS81950.1| chromosomal replication initiator protein dnaA [Thermus thermophilus HB27] Length = 446 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 150/472 (31%), Positives = 255/472 (54%), Gaps = 41/472 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ E+++ V ++ + + +WF+R++ + ++ L+VPT+F WI+ Y Sbjct: 11 LSHEAVWQHVLEHIRRSITEVEFHTWFERIRPLGIRDGVLELAVPTSFALDWIRRHYAGL 70 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + ++ E+ V + + ++P+ Sbjct: 71 IQEALGLLGAQAPRFELRVVPGVVVQEDIFQAAPAEAPRP-------------------- 110 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 111 ----KLNPKYTFENFVVGPNNSMAHAAAVAVAESPGRAY-----NPLFIYGGVGLGKTHL 161 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ ++ KR P+L++ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ Sbjct: 162 MHAVGHSVAKRFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIA 221 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D E Sbjct: 222 GKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLET 281 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK E L I E+ L ++AR VT++ REL+GA + + S + LT Sbjct: 282 RIAILK-----MNAEQRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASLNGVELTR 336 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + LS + E + +E I R VA H+ + +L + R + VV PRQ+AMYL + Sbjct: 337 AVAAKALSDIFAPRELEADPLE-IIRKVADHFGLKPEELTGSGRKKEVVLPRQLAMYLVR 395 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S PEIG+ FG RDHTTVL+A++KV+++ E+D +EV+ L R + E Sbjct: 396 ELTRASLPEIGQLFGGRDHTTVLYAIQKVQELAESD----REVQGLLRTLRE 443 >gi|293602695|ref|ZP_06685136.1| DNA-directed DNA replication initiator protein [Achromobacter piechaudii ATCC 43553] gi|292818886|gb|EFF77926.1| DNA-directed DNA replication initiator protein [Achromobacter piechaudii ATCC 43553] Length = 485 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 147/494 (29%), Positives = 232/494 (46%), Gaps = 39/494 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETI 93 + + SRL+ ++ P ++W + L + L V P F W++ + I Sbjct: 2 KEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDETQAVLRVAAPNRFKLDWVRKNFSHQI 61 Query: 94 TKLFQEEHSRIQGVEILVRS----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L E R V + S +P A P + LS P+ Sbjct: 62 EALAAEWFKRPVQVLFELPSHGAAPRMPVAPVRAPQPDQSHLSAAQPAGGAPPMQAPASA 121 Query: 150 ISPVF-------------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 P S L++ F F+ G +N++A AA +AE Sbjct: 122 APPPPATTVAAQAVNADAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPGTS 181 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLF++ VGLGKTHL+ AI NA + +RV Y+ A+ ++ A + Sbjct: 182 Y-----NPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAF 236 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + K ++DLLLIDD+QF GK Q EF + +++ KQ++ +D P EL +D Sbjct: 237 DDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGID 296 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR G++V + + EMR +IL + + E + + EEV +A+ + ++ R Sbjct: 297 SRLISRFDSGLTVAIEPPELEMRVAIL-----LRKAESEGVPMPEEVAFFIAKHLRSNVR 351 Query: 370 ELDGAFNQLVFRHSFAP--ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 EL+GA +++ F +LT ++ E L L++ ++ +E+IQ+ VA Y I Sbjct: 352 ELEGALRKVLAYARFHGRDVLTVDVCKEALKDLLSVSNG-QITVENIQKTVADFYKIKVA 410 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+ S RR + PRQVAMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 411 DMYSKRRPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQA 470 Query: 488 TLKKEVELLKRLIS 501 L + +L++ + Sbjct: 471 ELNHTLHVLEQTLK 484 >gi|145630089|ref|ZP_01785871.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] gi|144984370|gb|EDJ91793.1| chromosomal replication initiation protein [Haemophilus influenzae R3021] Length = 439 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 152/452 (33%), Positives = 251/452 (55%), Gaps = 22/452 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ +L++QV ++W + L+ V +N + L F+K W++ YL Sbjct: 1 MNLSNLWQSCLLQLQDQVSASDLSTWLRPLQADVVSNNHIVLYASNMFVKGWVETHYLAQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + ++ + I ++ P +P I + +P T S+S + ++ +P Sbjct: 61 IQQ-ICQTLAQNPELRISLKEGVKP-------APKIVESTPNTTLRSESAVDFQTESSTP 112 Query: 153 V-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + F S L+++ +F F+EG SN++A Q +A+ NP F++ GLGKTH Sbjct: 113 IKFESHLNTKHLFDNFVEGKSNQLARAVGQKLAQAPGEP----SANPFFLYGGTGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N + +PN RV+Y+ A FM A+RDN K R++D LL+DD+QF Sbjct: 169 LLHAIGNGILANKPNARVLYIHANNFMQHMVKAVRDNKMDQFKKFYRSLDALLVDDIQFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ NSL ++ +Q++ +DR P E+E ++ R++SR G++ + D E Sbjct: 229 AEKEKTQEEFFHIFNSLFETGRQIILTSDRYPKEIEKIEERLKSRFGWGLTTAIEPPDLE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL + + E+ +N+ EEV +A+ + T+ REL+GA N++ F + Sbjct: 289 TRVAIL-----LKKAEEHNMNLPEEVAFFIAQRLRTNVRELEGALNRVKAMQDFKGGDID 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L ++ + + IE+IQ++VA++Y I +DL S R R+V RPRQ+AM L+ Sbjct: 344 IDFVRDTLKDILALQ-ERLVTIENIQKVVAEYYRIKVSDLKSKSRARSVTRPRQIAMALA 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 K +T RS PEIGR F DRDHTTVL+A R+V K Sbjct: 403 KELTNRSLPEIGRAF-DRDHTTVLNACREVPK 433 >gi|325915701|ref|ZP_08178006.1| chromosomal replication initiator protein DnaA [Xanthomonas vesicatoria ATCC 35937] gi|325538118|gb|EGD09809.1| chromosomal replication initiator protein DnaA [Xanthomonas vesicatoria ATCC 35937] Length = 442 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 158/468 (33%), Positives = 239/468 (51%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ I L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAEDRGDGI-VLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + E + S + +P I P F Sbjct: 61 LAYFAG---------------NGEVALAVGSRPRAPEPAPAPMAAPSAPVAAPIVP-FAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + +I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|291561644|emb|CBL40443.1| chromosomal replication initiator protein DnaA [butyrate-producing bacterium SS3/4] Length = 454 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 144/478 (30%), Positives = 254/478 (53%), Gaps = 33/478 (6%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 + + + + +K + + Y +W L SV +I+ + VP + +++K + Sbjct: 1 MLEEIKEKWDEILLNIKEEHDISEVSYRTWLLPLIPDSVDKDILTILVPDSAFISYVKKK 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y + +E ++ ++S P TN + S + L Sbjct: 61 YEFLLKITIEEITGFQCELDFKLKS--------DVKEPEKENRLINVTNNTVSQLALQ-- 110 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + L+ R+ F TF+ G +N +A A+ ++AE Y NPLFI+ VGLG Sbjct: 111 ------NANLNPRYTFDTFVVGKNNNLAHAASLAVAESPGEIY-----NPLFIYGGVGLG 159 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLI 265 KTHL+ ++A+ +K P+ +++Y+T+E F AIR+ ++ RN D+LLI Sbjct: 160 KTHLMHSVAHFILKNNPSAKILYVTSEKFTNELIDAIRNKNNVSTTEFREKYRNNDVLLI 219 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H N+L ++ KQ++ ++DRPP E+E+L+ R+RSR + G++V + Sbjct: 220 DDIQFIIGKESTQEEFFHTFNALYEAKKQIIISSDRPPREIETLEDRLRSRFEWGLTVDI 279 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 DYE R +IL+ ++E NI+ E++ ++A V ++ REL+GA ++V Sbjct: 280 QPPDYETRMAILRK-----KEELEGYNIDNEIIKYIATNVKSNIRELEGALTKIVASSKL 334 Query: 385 A-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + E+A+E L L++ +++ + I +V++H+ I+ DL+ +R + +V PRQ Sbjct: 335 NNKEINLELAEEALKDLISPNAAREVTPQLIINVVSEHFGITPLDLIGQKRSKELVFPRQ 394 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MYL MT S IG+ G RDHTT++H +K+ L+TD LK +++LK+ I+ Sbjct: 395 IVMYLCGDMTSESLQNIGKALGGRDHTTIIHGTKKIASELKTDENLKNTIDILKKKIN 452 >gi|222528058|ref|YP_002571940.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor bescii DSM 6725] gi|312621128|ref|YP_004022741.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor kronotskyensis 2002] gi|222454905|gb|ACM59167.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor bescii DSM 6725] gi|312201595|gb|ADQ44922.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor kronotskyensis 2002] Length = 454 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 149/480 (31%), Positives = 249/480 (51%), Gaps = 39/480 (8%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPD----VYASWFQRLKFHSVLHN-IVHLSVPTNFLKAW 84 +E + ++ + +K ++ P Y +WF+ L N + L +F + Sbjct: 1 MVEYDVNEVWEKIKEAVKKEINPSPTDISYNTWFESLVPLCFDDNDTLILKAFADFHRDI 60 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + NRY I ++ S +++++ + Sbjct: 61 VINRYSLVILNAIRQLFSPHLSIKVILPDEVEKYKR----------------------FL 98 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 KQ P + L+ ++ F TF+ G++NR+A AA ++AE NPLFI+ Sbjct: 99 KPKQDEKPEIVTQLNPKYTFETFVVGNNNRLAHAAALAVAETP---PGERTYNPLFIYGG 155 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LL Sbjct: 156 VGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLL 215 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ Sbjct: 216 IDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITD 275 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +IL + + + + +L +A + T+ REL+GA N+++ Sbjct: 276 IQPPDFETRIAILSKKCQLEGT-----PVPQHILEFIASKIETNIRELEGALNKILAYSK 330 Query: 384 FA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +T ++A++ L ++T K++ IEDIQ VA ++ I D S+RR R V Sbjct: 331 LMAPDKEITLDLAEKALKEFIDTNTKKELTIEDIQAEVASYFGIRLEDFKSSRRSRNVAF 390 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ TD K VE +K+ + Sbjct: 391 PRQIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINTDSNTKNTVETIKKRL 450 >gi|325953648|ref|YP_004237308.1| Chromosomal replication initiator protein dnaA [Weeksella virosa DSM 16922] gi|323436266|gb|ADX66730.1| Chromosomal replication initiator protein dnaA [Weeksella virosa DSM 16922] Length = 475 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 143/484 (29%), Positives = 242/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ N ++ S +++ + + + +WF K ++ NI+ + VP+ F W+++ Y+ Sbjct: 1 MDNNAIIVWEKCLSYIQDNIDKEAFDTWFLPTKAVKLVENILTIQVPSKFFYEWLEDNYI 60 Query: 91 ETITKLFQEEHS--RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + + I+ P T PSI K I I Sbjct: 61 TLLKSALLKVLGPDGKLVYSIVTNMRNKPQNPDTVKIPSINKEKVKPNLIDAPLKIESND 120 Query: 149 TISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 ++P S L+ R+ F FIEG SNR+A TA ++IA+ NP Sbjct: 121 VLNPFVIPGLQKIKIDSQLNYRYNFDNFIEGESNRLARTAGKAIAKRPG----GTSFNPF 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI+ VGLGKTHL+ AI + P+ V+Y++ E F +F +A+ + + + Sbjct: 177 FIYGGVGLGKTHLVHAIGQEIKELYPDKSVLYVSTEKFTMQFINAVANKSQNDFVHFYQM 236 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L KQ++ +D+ P+ L ++PR+ SR + Sbjct: 237 IDVLIIDDIQFLAGKAKTQEAFFHIFNDLQQKGKQIILTSDKSPATLTEMEPRLISRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++ L + D R +I++ + E + I E VL ++A V T+ REL+G N + Sbjct: 297 GLNAELQMPDASTRRNIIQQ-----KVEKDGIEIPETVLDYIAENVETNVRELEGTLNSI 351 Query: 379 VFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + +F +T ++ + LS+++ K++ I+ IQ+ V ++ I D+ S R R Sbjct: 352 IAQSTFNRKEITLDLVKDTLSNIIQ-YSKKEISIDYIQKTVCDYFKIPIEDIQSRSRKRD 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ R +AMY +KI T S IG + G+RDH TVLHA + V + ETD K +E + Sbjct: 411 VVQARHLAMYFAKIHTKASLKSIGDKIGNRDHATVLHACKTVTNLSETDKIFKGYIEEIN 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|58584534|ref|YP_198107.1| chromosomal replication initiation protein [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|71151810|sp|Q5GT09|DNAA_WOLTR RecName: Full=Chromosomal replication initiator protein DnaA gi|58418850|gb|AAW70865.1| ATPase involved in DNA replication initiation, DnaA [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 460 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 174/483 (36%), Positives = 268/483 (55%), Gaps = 34/483 (7%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTN 79 K + D+ + + + + L N G Y SW LKF S + V LSVPT Sbjct: 7 KVSAMFFDQIVTATDHNIAWEKIQNLLYNLYGEATYNSWLSSLKFVSSSNGEVLLSVPTR 66 Query: 80 FLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS 139 F+K WI Y+E I L+Q E I ++I V N S Sbjct: 67 FIKEWITVHYMEKILLLWQNEDKSICSIDIQVTE---------------------EKNSS 105 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 S I K+ GSPLD RF F F+ G N +A TAA+ +AE + NPL Sbjct: 106 SSIISKNKEESVNNLGSPLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPIPGS---NPL 162 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSL 257 F++ VGLGKTHL+ AIA + P+ + VVYL+AE FM+++ +A+R + K+ Sbjct: 163 FLYGGVGLGKTHLMHAIAWHIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQF 221 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D+L++DD+QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL Sbjct: 222 RSVDVLMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRL 281 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G+ + +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N Sbjct: 282 GWGLVADINETTFELRLGILQ-----AKVEQMNMYVPQDVLEFLARNIRSNIRELEGALN 336 Query: 377 QLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 ++ +T E A E L L+ + + + I +IQ+ +A+ +NI D+ SNRR+R Sbjct: 337 KVAHTSLIGRSMTVESASETLMDLLRSNH-RSITIAEIQKKIAEFFNIKVTDMHSNRRLR 395 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 ++VRPRQ+AMY +K T +S P+IGR FG RDH TV+HAV+++E ++TD E+ L Sbjct: 396 SLVRPRQIAMYFAKKFTHKSLPDIGRSFGGRDHATVIHAVKQIENFIKTDSEFADEINQL 455 Query: 497 KRL 499 +++ Sbjct: 456 RKM 458 >gi|260063127|ref|YP_003196207.1| chromosomal replication initiation protein [Robiginitalea biformata HTCC2501] gi|88784696|gb|EAR15866.1| chromosomal replication initiation protein [Robiginitalea biformata HTCC2501] Length = 474 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 137/484 (28%), Positives = 242/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V S++ + +++ + P + +WF +K + + + VP+ F W++ Y+ Sbjct: 1 MNVTANSVWKNCLAFIEDNIQPQAFKTWFVPIKPVKLSEKALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + E + +++ + +PS + +P + + N Sbjct: 61 KLLKVALTRELGEGAKLVYVIKMENTYGNREPFTEKIPSANRGQMTPQEMDVPIKSKNPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFVIPGIRNIKIESQLNPSYNFENFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 + VGLGKTHL AI + P V+Y++AE F ++ ++R N + + Sbjct: 177 LVFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVRKNTRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R ILKN+L E + EE++ +VA+ + ++ REL+GA L Sbjct: 297 GLSAELQSPDYETRVCILKNKLYRDGVE-----MPEEIIDYVAKHIKSNIRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF +T ++A +++ V +++ IE IQ++V+ ++ + L S R R Sbjct: 352 IAQSSFNKKEVTLDLAQQVVEKFVKN-TKREVSIEYIQKVVSDYFEMDVATLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + ETD +K +E L Sbjct: 411 IVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLAETDKQFRKYIEDLT 470 Query: 498 RLIS 501 + S Sbjct: 471 KKFS 474 >gi|312877904|ref|ZP_07737849.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor lactoaceticus 6A] gi|311795330|gb|EFR11714.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor lactoaceticus 6A] Length = 454 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 148/480 (30%), Positives = 251/480 (52%), Gaps = 39/480 (8%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPD----VYASWFQRLKFHSVLHN-IVHLSVPTNFLKAW 84 ++ + ++ + +K ++ P Y +WF+ L N + L +F + Sbjct: 1 MVDYDVNEVWEKIKEVIKKELNPSPTDISYNTWFESLVPVCFDDNDTLILRAFADFHRDI 60 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + NRY I ++ S +++++ + + + Sbjct: 61 VINRYSILILNALRDLFSPHLSLKVILPNEVEKYKK----------------------FL 98 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 KQ P + L+ ++ F TF+ G++NR+A AA ++AE NPLFI+ Sbjct: 99 KQKQDEKPEITTSLNPKYTFETFVVGNNNRLAHAAALAVAETP---PGERTYNPLFIYGG 155 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LL Sbjct: 156 VGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLL 215 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ Sbjct: 216 IDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITD 275 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +IL + + + + +L +A + T+ REL+GA N+++ Sbjct: 276 IQPPDFETRIAILSKKCQLEGT-----PVPQHILEFIASKIETNIRELEGALNKILAYSK 330 Query: 384 FA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +T E+A++ L ++T K++ IEDIQ VA ++ I D S+RR R V Sbjct: 331 LMAPDKEITLELAEKALKEFIDTNTKKELTIEDIQAEVASYFGIKLEDFKSSRRSRNVAF 390 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ TD + VE +K+ + Sbjct: 391 PRQIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINTDSNTRNAVETIKKRL 450 >gi|312901296|ref|ZP_07760579.1| replication initiator protein DnaA [Enterococcus faecalis TX0470] gi|311291673|gb|EFQ70229.1| replication initiator protein DnaA [Enterococcus faecalis TX0470] Length = 447 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 140/470 (29%), Positives = 247/470 (52%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ES + + + + + +W + + + +N + L VP+ + + + I Sbjct: 3 DVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSAKI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E ++ G E++ V + L+ ++ ++ +Q+ + Sbjct: 63 V----ETGFKLTGAEVMPHFVV--------ADEKDAALAQELEEPAEEEVVFSEQSKKAM 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL Sbjct: 162 HAIGHQMLVNQPDAKVKYVSSETFTNEFINSIQTRTSEQFRKEYRNVDLLLVDDIQFLAE 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K EF H N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R Sbjct: 222 KEATLEEFFHTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + +L I ++ L ++A + ++ REL+GA ++ + +T Sbjct: 282 IAILRK-----KADAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTS 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ Sbjct: 337 LAADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLARE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG FG +DHTTV+HA K++++LE D ++KEV +K L++ Sbjct: 397 MTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLEKDPAIQKEVSEIKNLLN 446 >gi|312903107|ref|ZP_07762288.1| replication initiator protein DnaA [Enterococcus faecalis TX0635] gi|310633498|gb|EFQ16781.1| replication initiator protein DnaA [Enterococcus faecalis TX0635] Length = 447 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 139/470 (29%), Positives = 241/470 (51%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ES + + + + + +W + + + +N + L VP+ + + + I Sbjct: 3 DVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSAKI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E ++ G E++ V + + +S + Sbjct: 63 V----ETGFKLTGAEVMPHFVVADEKDAALAQELEELAEEEVVFSEQSKKAM-------- 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL Sbjct: 162 HAIGHQMLVNQPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAE 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K EF H N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R Sbjct: 222 KEATLEEFFHTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + +L I ++ L ++A + ++ REL+GA ++ + +T Sbjct: 282 IAILRK-----KADAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTS 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ Sbjct: 337 LAADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLARE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG FG +DHTTV+HA K++++LE D ++KEV +K L++ Sbjct: 397 MTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLEKDPAIQKEVSEIKNLLN 446 >gi|332290651|ref|YP_004429260.1| chromosomal replication initiator protein DnaA [Krokinobacter diaphorus 4H-3-7-5] gi|332168737|gb|AEE17992.1| chromosomal replication initiator protein DnaA [Krokinobacter diaphorus 4H-3-7-5] Length = 475 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 132/484 (27%), Positives = 242/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +S++ S +K+ + P Y +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MTLTAQSVWDNCLSFIKDNITPQAYKTWFEPIKAVKLTDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEK--TASSPSITKLSPINTNISKSPIILGKQ 148 + + + + ++R + T PS + + + ++ + Sbjct: 61 KLLKVALNKVLGENAKLVYVIRMENTYGNNQPFTEKIPSANRSTMKSQDVDAPFKNKNPE 120 Query: 149 TISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFVIPGIRNLQIESQLNPNYNFDNFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 + VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LVFGGVGLGKTHLAHAIGVQIKDKYPAKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQV 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L +E R +I+K +L E + EE++ +A + T+ REL+GA L Sbjct: 297 GLSAELQHPSFETRIAIIKQKLYQDGVE-----MPEEIVEFLANNIKTNVRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + SF +T ++A +++ + V +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAHSSFNKKEITLDLAKKIVDNYVK-HTKREVSIDYIQKIVSDYFQMDVETLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + TD +K VE L Sbjct: 411 IVQARQLAMFFAKKLTKASLASIGSQIGQRDHATVLHACKTVDNLASTDKQFRKYVEDLG 470 Query: 498 RLIS 501 + +S Sbjct: 471 KKLS 474 >gi|325926219|ref|ZP_08187577.1| chromosomal replication initiator protein DnaA [Xanthomonas perforans 91-118] gi|325543401|gb|EGD14826.1| chromosomal replication initiator protein DnaA [Xanthomonas perforans 91-118] Length = 442 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 154/468 (32%), Positives = 238/468 (50%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + A + +P + + + F Sbjct: 61 LAYFAGN----------------GEVALAVGSRPRAPEPAPAAAAVPSAPQAAPMVPFAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|55981942|ref|YP_145239.1| chromosomal replication initiation protein [Thermus thermophilus HB8] gi|14194700|sp|Q9X9D5|DNAA_THET8 RecName: Full=Chromosomal replication initiator protein DnaA gi|4572641|emb|CAB40110.1| initiator protein DnaA [Thermus thermophilus] gi|55773355|dbj|BAD71796.1| chromosomal replication initiator protein DnaA [Thermus thermophilus HB8] Length = 436 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 151/472 (31%), Positives = 255/472 (54%), Gaps = 41/472 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ E+++ V ++ + + +WF+R++ + ++ L+VPT+F WI+ Y Sbjct: 1 MSHEAVWQHVLEHIRRSITEVEFHTWFERIRPLGIRDGVLELAVPTSFALDWIRRHYAGL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + ++ E+ V + + ++P+ Sbjct: 61 IQEALGLLGAQAPRFELRVVPGVVVQEDIFQAAPAEAPRP-------------------- 100 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 101 ----KLNPKYTFENFVVGPNNSMAHAAAVAVAESPGRAY-----NPLFIYGGVGLGKTHL 151 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ ++ KR P+LR+ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ Sbjct: 152 MHAVGHSVAKRFPHLRIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIA 211 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D E Sbjct: 212 GKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLET 271 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK E L I E+ L ++AR VT++ REL+GA + + S + LT Sbjct: 272 RIAILK-----MNAEQRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASLNGVELTR 326 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + LS + E + +E I R VA H+ + +L + R + VV PRQ+AMYL + Sbjct: 327 AVAAKALSDIFAPRELEADPLE-IIRKVADHFGLKPEELTGSGRKKEVVLPRQLAMYLVR 385 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S PEIG+ FG RDHTTVL+A++KV+++ E+D +EV+ L R + E Sbjct: 386 ELTRASLPEIGQLFGGRDHTTVLYAIQKVQELAESD----REVQGLLRTLRE 433 >gi|312792284|ref|YP_004025207.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179424|gb|ADQ39594.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor kristjanssonii 177R1B] Length = 454 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 148/480 (30%), Positives = 251/480 (52%), Gaps = 39/480 (8%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPD----VYASWFQRLKFHSVLHN-IVHLSVPTNFLKAW 84 ++ + ++ + +K ++ P Y +WF+ L N + L +F + Sbjct: 1 MVDYDVNEVWEKIKEVIKKELNPSPTDISYNTWFESLVPVCFDDNDTLILRAFADFHRDI 60 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + NRY I ++ S +++++ + + + Sbjct: 61 VINRYSILILNALRDLFSPHLSLKVILPNEVEKYKK----------------------FL 98 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 KQ P + L+ ++ F TF+ G++NR+A AA ++AE NPLFI+ Sbjct: 99 KQKQDEKPEITTSLNPKYTFETFVVGNNNRLAHAAALAVAETP---PGERTYNPLFIYGG 155 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LL Sbjct: 156 VGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTNEFRLKYRNVDVLL 215 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ Sbjct: 216 IDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITD 275 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +IL + + + + +L +A + T+ REL+GA N+++ Sbjct: 276 IQPPDFETRIAILSKKCQLEGT-----PVPQHILEFIASKIETNIRELEGALNKILAYSK 330 Query: 384 FA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +T E+A++ L ++T K++ IEDIQ VA ++ I D S+RR R V Sbjct: 331 LMAPDKEITLELAEKALKEFIDTNTKKELTIEDIQAEVASYFGIKLEDFKSSRRSRNVAF 390 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ TD + VE +K+ + Sbjct: 391 PRQIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINTDSNTRNAVETIKKRL 450 >gi|220920055|ref|YP_002495356.1| chromosomal replication initiation protein [Methylobacterium nodulans ORS 2060] gi|219944661|gb|ACL55053.1| chromosomal replication initiator protein DnaA [Methylobacterium nodulans ORS 2060] Length = 499 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 210/479 (43%), Positives = 303/479 (63%), Gaps = 15/479 (3%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + + V RL+ ++G DV+ASWF RL+ V L+VPT FLK+WI++ YL+ + Sbjct: 26 DVAAAWQRVKRRLRAELGEDVFASWFARLELQEVSGGTARLTVPTRFLKSWIESHYLDRV 85 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL-------- 145 F+ E ++G+E+ VR P+ + ++ S Sbjct: 86 LATFRSEADGVEGIEVGVRGPMAPARAAPVGMAPAAPKAATPVRLAASAPAAAETAEADR 145 Query: 146 -GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 G+ + + G+PLD R F +F+ G SN +A AA+ +A D G NPL+ HA Sbjct: 146 AGRSEAADLSGAPLDPRLTFQSFVVGRSNALAHAAAERVAAHDGGG---PVYNPLYFHAG 202 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHLL AI +A+ + RV+YLTA+ FM+ F +A++ AL K+ LR ID+L+ Sbjct: 203 VGLGKTHLLHAIGHAAKEV--GRRVIYLTADRFMYGFVNALKTQNALAFKERLRAIDVLI 260 Query: 265 IDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 +DD+QF+QG+ IQ EF H LN+L+D+ +QVVAAADRPP+ELESLD R+RSRL GG+ V + Sbjct: 261 LDDVQFIQGRSIQAEFGHTLNALIDAGRQVVAAADRPPTELESLDERVRSRLAGGLVVEI 320 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 G D +R +IL++RL + P ++ V +VA+ +T +GR+L+GA N+L+ + Sbjct: 321 GTLDEALRATILQSRLEAVRATHPAFEVSPAVAEYVAKAITANGRDLEGAVNRLLAHATL 380 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T E A+ + LV E K+++IEDIQ++VA YN+SR+D+LS RR VV+PRQ Sbjct: 381 TGAPVTLETAETAIRDLVKNREPKRVKIEDIQKLVASRYNVSRSDILSERRTAAVVKPRQ 440 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +AMYLSK++T RS PEIGRRFG RDHTTVLHAVRK+EK + D L EVELLKR++ + Sbjct: 441 IAMYLSKVLTLRSLPEIGRRFGGRDHTTVLHAVRKIEKAIGEDSALCDEVELLKRMLQD 499 >gi|126660126|ref|ZP_01731245.1| chromosomal replication initiation protein [Cyanothece sp. CCY0110] gi|126618569|gb|EAZ89319.1| chromosomal replication initiation protein [Cyanothece sp. CCY0110] Length = 456 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 140/473 (29%), Positives = 240/473 (50%), Gaps = 27/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + I+ V RLK ++ P + +W + N + + V F+ ++ Y Sbjct: 1 MTISPQYIWNQVLDRLKMRLNPTAFETWLASATVQTFQDNCLVIQVENPFILNHLQKTYY 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I EE I G I V+ T+ + + N S + + Sbjct: 61 SLIV----EEVETIVGYSISVKLT-------TSQEQNWKIVDKDEYNYSSNKLNNKTDKQ 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 SP S L+ + FS F+ G +NR+A A+ ++AE NPLF+ VGLGKT Sbjct: 110 SPKL-SQLNPHYNFSRFVVGPTNRMAHAASLAVAESPGR-----EFNPLFLCGGVGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA+ ++ PN V Y++ E F ++IR + + ++ R D+LL+DD+QF Sbjct: 164 HLMQAIAHYRLELYPNANVFYVSTEQFTNDLITSIRQDSMEHFREHYRTADILLVDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DRPP + SL R+ SR G+ + + D Sbjct: 224 IEGKEYTQEEFFHTFNTLHEAGKQVVIASDRPPKRIPSLQDRLVSRFSMGLIADIQVPDL 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + + +V+ ++A T++ REL+GA + V ++ I Sbjct: 284 ETRMAILQK-----KAEYENIVLPRDVIEYIATNYTSNIRELEGALIRAV---TYISISG 335 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++N + + + I +++A+++N+S DL + R R + RQ+ MYL Sbjct: 336 LSMTVENIAPVLNPPMEQISVSPDVIIKIIAENFNVSIEDLKGSSRRREISLARQIGMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTVL++ K+ K+ + D L +++ L I+ Sbjct: 396 MRQHTDLSLPRIGEEFGGKDHTTVLYSCDKISKLQKKDWDLSQQLSELSDRIN 448 >gi|78045557|ref|YP_361732.1| chromosomal replication initiation protein [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123744129|sp|Q3BZT1|DNAA_XANC5 RecName: Full=Chromosomal replication initiator protein DnaA gi|78033987|emb|CAJ21632.1| chromosomal replication initiator protein DnaA [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 442 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 154/468 (32%), Positives = 238/468 (50%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + A + +P + + + F Sbjct: 61 LAYFAGN----------------GEVALAVGSRPRAPEPAPAAAAVPSAPQAAPMVPFAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQRPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|163788605|ref|ZP_02183050.1| chromosomal replication initiator protein [Flavobacteriales bacterium ALC-1] gi|159875842|gb|EDP69901.1| chromosomal replication initiator protein [Flavobacteriales bacterium ALC-1] Length = 475 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 138/483 (28%), Positives = 247/483 (51%), Gaps = 23/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ +S+++ + +K+ + P Y +WF+ ++ + N + + VP+ F W++ Y+ Sbjct: 1 MEITAQSVWSNCLAFIKDNIQPQAYKTWFEPIEAVKLSGNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + +E + +++ + +PS ++A + N + Sbjct: 61 KILKVALNKELGEDAKLVYVIKMENTYGNKQPFTEKIPSSNRSAVKSQDVDVPFNNKSPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A A ++A NPL Sbjct: 121 LKNPFVIPGIRNVKIESQLNPSYSFENFLEGDSNRLARNAGIAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIDSVKKNNRNDFIHFYQI 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKTGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L D+E R SILKN+L E + +E++ +VA+ + T+ REL+GA L Sbjct: 297 GLSAELQTPDFETRVSILKNKLYRDGVE-----MPDEIVEYVAKHIKTNVRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF +T +A +++ V +++ I+ IQ++V+ ++ + N L S R R Sbjct: 352 IAQSSFNKKEITINLAKDIVEKFVKN-TKREVSIDYIQKVVSDYFQMDVNTLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K VE L Sbjct: 411 IVQARQLAMFFAKKYTKASLASIGSQIGQRDHATVLHACKTVDNLSSTDKQFRKYVEDLA 470 Query: 498 RLI 500 + + Sbjct: 471 KKL 473 >gi|311696593|gb|ADP99466.1| chromosomal replication initiation protein [marine bacterium HP15] Length = 480 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 153/490 (31%), Positives = 247/490 (50%), Gaps = 39/490 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + L+++ + +W + L+ + L P F+ W+ +YL I ++ + Sbjct: 2 WHQCLEVLRDEFPAQQFNTWLRPLQ-SDHREGQLMLFAPNRFVMDWVNEKYLRRIEEVLK 60 Query: 99 EEHS-RIQGVEILVRSVALP---------------SVEKTASSPSITKLSPINTNISKSP 142 + + + V + V S V++ A S + + ++ +P Sbjct: 61 DLNGGQAPRVNMKVGSAPREGEPVKRSEAPARVNGQVQEEAGSRVTEEEKGVAATVASTP 120 Query: 143 IILGKQTISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 + K S L+ F F TF+EG SN++A A+ +AE Y Sbjct: 121 SVRPKSDTQRRPVQVEGDIKHQSFLNEGFTFETFVEGKSNQLARAASMQVAENPGGAY-- 178 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPLF++ VGLGKTHL+ AI N ++R P +V YL +E F+ A++ N Sbjct: 179 ---NPLFLYGGVGLGKTHLMHAIGNEIVRRNPKAKVAYLRSERFVADMVKALQLNAINEF 235 Query: 254 KDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 K R++D LLIDD+QF K Q EF H N+LL+ +QV+ DR P E+ ++ R+ Sbjct: 236 KRYYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVIVTCDRFPKEIVDMEERL 295 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 +SR G++V + + E R +IL + + + + ++ E +A+ + ++ REL+ Sbjct: 296 KSRFGWGLTVMVEPPELETRVAIL-----MKKADQANVKLSSEAAFFIAQKIRSNVRELE 350 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA ++ F +T E L L+ K++ I++IQR VA++Y I DLLS Sbjct: 351 GALRLVIANAHFTGSEITPPFIRESLKDLLAL-HEKQVSIDNIQRTVAEYYKIKVADLLS 409 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 RR RTV RPRQVAM LSK +T S PEIG FG RDHTTVLHA +K+ ++ ETD +++ Sbjct: 410 KRRTRTVTRPRQVAMALSKELTNHSLPEIGDAFGGRDHTTVLHACKKIVELQETDPGIRE 469 Query: 492 EVELLKRLIS 501 + + RL++ Sbjct: 470 DYQNFMRLLT 479 >gi|61212638|sp|Q72H87|DNAA_THET2 RecName: Full=Chromosomal replication initiator protein DnaA Length = 436 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 150/472 (31%), Positives = 255/472 (54%), Gaps = 41/472 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ E+++ V ++ + + +WF+R++ + ++ L+VPT+F WI+ Y Sbjct: 1 MSHEAVWQHVLEHIRRSITEVEFHTWFERIRPLGIRDGVLELAVPTSFALDWIRRHYAGL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + ++ E+ V + + ++P+ Sbjct: 61 IQEALGLLGAQAPRFELRVVPGVVVQEDIFQAAPAEAPRP-------------------- 100 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 101 ----KLNPKYTFENFVVGPNNSMAHAAAVAVAESPGRAY-----NPLFIYGGVGLGKTHL 151 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ ++ KR P+L++ Y++ E F +AIR++ ++ R++DLLL+DD+QF+ Sbjct: 152 MHAVGHSVAKRFPHLKIEYVSTETFTNELINAIREDRMTEFRERYRSVDLLLVDDVQFIA 211 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D E Sbjct: 212 GKERTQEEFFHTFNALYEAHKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLET 271 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK E L I E+ L ++AR VT++ REL+GA + + S + LT Sbjct: 272 RIAILK-----MNAEQRGLRIPEDALEYIARQVTSNIRELEGALMRAIAFASLNGVELTR 326 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + LS + E + +E I R VA H+ + +L + R + VV PRQ+AMYL + Sbjct: 327 AVAAKALSDIFAPRELEADPLE-IIRKVADHFGLKPEELTGSGRKKEVVLPRQLAMYLVR 385 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S PEIG+ FG RDHTTVL+A++KV+++ E+D +EV+ L R + E Sbjct: 386 ELTRASLPEIGQLFGGRDHTTVLYAIQKVQELAESD----REVQGLLRTLRE 433 >gi|291536990|emb|CBL10102.1| chromosomal replication initiator protein DnaA [Roseburia intestinalis M50/1] gi|291539806|emb|CBL12917.1| chromosomal replication initiator protein DnaA [Roseburia intestinalis XB6B4] Length = 452 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 134/479 (27%), Positives = 252/479 (52%), Gaps = 37/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL-KAWIKN 87 ++ E + + S +K++ + + +W + L+ + V + +++ VP+ + ++I Sbjct: 1 MDKILEK-WDEILSTVKHEHDISDISFDTWIRPLEVYGVEGSTLYILVPSEQMTLSYISK 59 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +Y + E ++ ++ + P LS Sbjct: 60 KYYLPLKVTIAELTGTEYEIKFILPEQTKNIRTGNSGVPKKNALS--------------- 104 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 S L+ + F TF+ GS+NR A +A+ ++AE Y NPL+I+ GL Sbjct: 105 ---EKADRSNLNPNYTFDTFVVGSNNRFAQSASLAVAESPGEAY-----NPLYIYGGPGL 156 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLL 264 GKTHL+ +I + ++R PN +V+Y+T+E F +IR L++ R ID+L+ Sbjct: 157 GKTHLMHSIGHFILERNPNAKVLYVTSEEFTNEVIESIRSGNASAMNKLREKYRTIDVLM 216 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ GK Q EF H N+L + KQ++ +D+PP ++E+L+ RIRSR + G+ Sbjct: 217 VDDVQFIIGKESTQEEFFHTFNALHSAGKQIILTSDKPPKDMETLEDRIRSRFEWGLIAD 276 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 +G DYE R +IL+ + E + +++E+L ++A + ++ REL+GA N+L+ + Sbjct: 277 IGTPDYETRMAILRR-----KVEADDMKLSDEILNYIATNIKSNIRELEGALNKLLAYSN 331 Query: 384 FAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T EIA + L +++ + +++ + + +V +H+NIS + ++S R + RPR Sbjct: 332 LEKTDITMEIAMKELQNIITPDKPREITPQLVIEVVTEHFNISLDQMISKNRSNEIARPR 391 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AMYL K MT IG+ G RDH+T++H ++K+ E++ + +E +K+ I+ Sbjct: 392 QIAMYLCKNMTDIPLDSIGQLLGGRDHSTIIHGIKKIADEYESNENTRNLIETIKKKIN 450 >gi|256419058|ref|YP_003119711.1| chromosomal replication initiator protein DnaA [Chitinophaga pinensis DSM 2588] gi|256033966|gb|ACU57510.1| chromosomal replication initiator protein DnaA [Chitinophaga pinensis DSM 2588] Length = 477 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 138/484 (28%), Positives = 251/484 (51%), Gaps = 24/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + CE ++ + +++ V + +WF+ +K + +N++ + VP+ F +++ Y+ Sbjct: 1 MNKTCEQVWERCLNIIRDIVEWQPFKTWFEPIKPIQLENNVLTIQVPSQFFYEYLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILV-----------RSVALPSVEKTASSPSITKLSPINTNIS 139 + K + E + +E + ++V +P + S N Sbjct: 61 GLLGKTIKRELGKDARLEYRIVVENGTPHQHPKTVNMPGQFTKSKKDSEVDFPLTIQNPV 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 K+P ++ S L+ + F ++IEG NRVA A ++++E NPL Sbjct: 121 KNPFVIPG-IKRVQIDSQLNPHYTFESYIEGDCNRVARRAGKTVSEKPG----GTSFNPL 175 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ +VGLGKTHL QAI N + PN V+Y++AE F+ +F +++ + + Sbjct: 176 VIYGAVGLGKTHLAQAIGNEVKRIHPNKAVLYVSAEKFINQFIDHSKNSIINDFIHFYQL 235 Query: 260 IDLLLIDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L++DD+QF + Q F + N L S KQ++ +D+PP +L+ L R+ SR + Sbjct: 236 IDVLIVDDIQFFARAEKTQDAFFAIFNHLHQSGKQLILTSDKPPKDLDGLQERLLSRFRW 295 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S + + D+E R IL+ + + L + +EV+ +VA + ++ REL+GA L Sbjct: 296 GLSADMQMPDFETRMEILE-----MKMRNDGLEMPKEVVKYVAYNIQSNVRELEGALISL 350 Query: 379 VFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + S + E+A +L V T +K++ IE IQ+MV +++++ + LL R R Sbjct: 351 LAQSSLNRKEIDLELAKRVLKSFVKTS-SKEITIESIQKMVCEYFDVPYDKLLQKTRKRE 409 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+ MYL+K T S IG FG RDHTTV+H+ + V+ +++TD + V L+ Sbjct: 410 IVQARQITMYLAKSFTKNSLKTIGEHFGGRDHTTVIHSCQTVKDLMDTDNAFRDNVIELQ 469 Query: 498 RLIS 501 + + Sbjct: 470 QKVQ 473 >gi|330752007|emb|CBL80520.1| chromosomal replication initiation protein [uncultured Polaribacter sp.] Length = 475 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 138/484 (28%), Positives = 245/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ ES++ S +K+ + P Y +WF+ +K + + + VP+ F W++ Y+ Sbjct: 1 MNLSAESVWNDCLSFIKDNIKPQAYKTWFEPIKPVKLSGEALTIQVPSKFFYEWLEEHYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTA-SSPSITKLSPINTNISKSPIILGKQT 149 + + + + V+ S + + P+ P+ K+ Sbjct: 61 KLLRVALVRKLGNDAKLIYDVKMENNYSSNRPQIVKIPSSNRDPLKPQKITVPLDATKRE 120 Query: 150 ISPVF----------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + F S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LRNPFVIPGLQKVKIESQLNPNYNFVNFVEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ VGLGKTHL AI + P+ V+Y+++E F +F +++ N + + Sbjct: 177 LIYGGVGLGKTHLSHAIGVDIKDKYPDKTVLYISSEKFTQQFIDSVKSNTRNDFIHFYQM 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SIL N+L E P E++ ++A+ + ++ REL+G + Sbjct: 297 GLSAELQAPDYETRISILDNKLFRDGVEMPS-----EIVEYIAKNIKSNVRELEGVIISM 351 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF + E+A +++ V K++ I+ IQ+ V+K++++ L S R R Sbjct: 352 IAQASFNRREFSLELAKQIVDKFVKN-TKKEVSIDYIQKEVSKYFDMDVATLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + ETD +K V+ L Sbjct: 411 IVQARQLAMFFAKRLTKTSLASIGNQIGQRDHATVLHACKTVDNLTETDKQFRKYVDDLT 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|148552930|ref|YP_001260512.1| chromosomal replication initiation protein [Sphingomonas wittichii RW1] gi|148498120|gb|ABQ66374.1| chromosomal replication initiator protein DnaA [Sphingomonas wittichii RW1] Length = 477 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 155/474 (32%), Positives = 265/474 (55%), Gaps = 22/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNR 88 ++ + + + L+ +G + W + L + + L P+ F+ W Sbjct: 20 IDAALAQAWETIRASLRRSIGVRTFDGWLKPLTLGDCDLASGTLKLIAPSEFMANWATTH 79 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +++ + + ++ +++ V I+ S + P++ + Sbjct: 80 FVDHLLQGWRALLPQVRHVSIVPASAS--------ERPALFSAPTAPVAAPAVEEAMPAP 131 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + G+PL++R+ F +++ G +N VA AA+++AE + NPLF+H GLG Sbjct: 132 SDDVRCGTPLEARYTFDSYVVGKANEVAYNAARTLAEG-----GKLVFNPLFLHGGTGLG 186 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + + RQP +VVY++AE FM+ F SA+R + K LR D+L+IDD+ Sbjct: 187 KTHLMHAIGHEYLARQPGAKVVYMSAEKFMFEFVSAMRAKDTFSFKQRLRAADVLMIDDV 246 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H +N L+ + +++V +ADR P +L+ ++ RI SRL G+ + Sbjct: 247 QFIAGKESTQEEFFHTMNELISAGRRLVISADRSPQDLDGIESRILSRLSWGLVADVNPA 306 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 D+E+R +IL +L P+ + ++V+M +AR ++ + REL+GA N++V + Sbjct: 307 DFELRLNILMRKLQG----MPQAQVPQDVVMFLARRISANVRELEGALNRVVAYAALSGK 362 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + + L+ ++ + +++ I++IQR V+ HY I + ++ S RR R V RPRQVAM Sbjct: 363 PVDIDFTQATLADILRANQ-RRVTIDEIQRKVSDHYRIRQAEMSSARRAREVARPRQVAM 421 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL+K +TPRS PEIGRRFG RDHTTV+HAV+++EK+ +TD L +V LL R + Sbjct: 422 YLAKQLTPRSLPEIGRRFGGRDHTTVIHAVKQIEKLRQTDAELDADVRLLIRQL 475 >gi|89052492|ref|YP_507943.1| chromosomal replication initiation protein [Jannaschia sp. CCS1] gi|123287123|sp|Q28WI0|DNAA_JANSC RecName: Full=Chromosomal replication initiator protein DnaA gi|88862041|gb|ABD52918.1| chromosomal replication initiator protein DnaA [Jannaschia sp. CCS1] Length = 475 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 153/478 (32%), Positives = 264/478 (55%), Gaps = 18/478 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + V L VG + +++W + + F + H VPTNF+ +W+ N + + I Sbjct: 2 TNDTWNEVRQDLLKVVGKNNFSAWIEPIDFDRIDERTAHFHVPTNFIGSWVTNNFGDLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP----------INTNISKSPII 144 + + V+ V A +V A++ + + ++ + Sbjct: 62 RQLSAHGAGADRVKFTVSPKAGAAVAAPANTSAPRPVPEMAAAAPAPAPVHHTAPAPAPV 121 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + G+ L+ F F+ F+ G N +A AA+ +AE V NPLF++ Sbjct: 122 AAPAQPRELPGAKLNPNFTFANFVVGKPNELAHAAARRVAET-----LDVTFNPLFLYGG 176 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AIA R P+ ++++L+AE FM RF A+R+ N K++ R++D+L+ Sbjct: 177 VGLGKTHLMHAIAWDLQDRHPDAKILFLSAEQFMHRFVRALREQDTFNFKETFRSVDILM 236 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ GK Q EF H N+L++ KQ+V + DR P ++E LD RI SRLQ G+ V Sbjct: 237 VDDVQFIAGKTSTQQEFFHTFNALVEMGKQIVISGDRAPVDMEELDNRIASRLQCGLVVD 296 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + DYE+R +L+++ + + P + VL ++A+ ++++ R L+GA +L Sbjct: 297 IHPTDYELRLGVLQHKAELLGAKYPHITFATGVLEYLAQKISSNVRVLEGALTRLFAFAD 356 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T ++A E L+ ++ KK+ +++I + ++Y I + D++S R R + RPR Sbjct: 357 LVRREVTVDLAKECLTDVLR-ATDKKVTMDEILKKTCEYYKIRQVDMISQNRQRVIARPR 415 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 Q+AMYL K +T RS PEIG++FG RDHTT+L+ VRK+E++++ D + ++ ELL+R + Sbjct: 416 QMAMYLCKRLTTRSLPEIGKKFGGRDHTTILYGVRKIEELMQADSQIAEDAELLRRTL 473 >gi|33591700|ref|NP_879344.1| chromosomal replication initiation protein [Bordetella pertussis Tohama I] gi|33598884|ref|NP_886527.1| chromosomal replication initiation protein [Bordetella parapertussis 12822] gi|61212733|sp|Q7VSE0|DNAA_BORPE RecName: Full=Chromosomal replication initiator protein DnaA gi|61212736|sp|Q7W2K5|DNAA_BORPA RecName: Full=Chromosomal replication initiator protein DnaA gi|33571343|emb|CAE44820.1| chromosomal replication initiator protein [Bordetella pertussis Tohama I] gi|33575014|emb|CAE39680.1| chromosomal replication initiator protein [Bordetella parapertussis] gi|332381119|gb|AEE65966.1| chromosomal replication initiation protein [Bordetella pertussis CS] Length = 469 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 141/478 (29%), Positives = 228/478 (47%), Gaps = 23/478 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETI 93 + + SRL+ ++ P ++W + L + L V P F W++ + I Sbjct: 2 KEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDEAQAVLRVAAPNRFKLDWVRKNFSHQI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L E + R V + + A + P + + Sbjct: 62 EALAAEWYQRPVQVTFELPGTSSAPRIPMAVPRPVAVSVPAVVAAVQQASEPAPPAPASA 121 Query: 154 F-------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 S L++ F F+ G +N++A AA +AE Y NPLF++ VG Sbjct: 122 DAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY-----NPLFLYGGVG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ AI NA + +RV Y+ A+ ++ A + + K ++DLLLID Sbjct: 177 LGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLID 236 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK Q EF + +++ KQ++ +D P EL +D R+ SR G++V + Sbjct: 237 DIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIE 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 + EMR +IL + + E + + EEV +A+ + ++ REL+GA +++ F Sbjct: 297 PPELEMRVAIL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFH 351 Query: 386 P--ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +LT ++ E L L++ ++ +E+IQ+ VA Y I D+ S RR + PRQ Sbjct: 352 GRDVLTVDVCKEALKDLLSVSNG-QITVENIQKTVADFYKIKVADMYSKRRPANIALPRQ 410 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAMYL+K +T +S PEIG FG RDHTTVLHAVRK+ L + +L++ + Sbjct: 411 VAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQAELNHTLHVLEQTLK 468 >gi|90960991|ref|YP_534907.1| chromosomal replication initiation protein [Lactobacillus salivarius UCC118] gi|227891669|ref|ZP_04009474.1| DNA-directed DNA replication initiator protein [Lactobacillus salivarius ATCC 11741] gi|301300472|ref|ZP_07206671.1| chromosomal replication initiator protein DnaA [Lactobacillus salivarius ACS-116-V-Col5a] gi|90820185|gb|ABD98824.1| Chromosomal replication initiation protein [Lactobacillus salivarius UCC118] gi|227866472|gb|EEJ73893.1| DNA-directed DNA replication initiator protein [Lactobacillus salivarius ATCC 11741] gi|300851919|gb|EFK79604.1| chromosomal replication initiator protein DnaA [Lactobacillus salivarius ACS-116-V-Col5a] Length = 454 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 154/475 (32%), Positives = 255/475 (53%), Gaps = 23/475 (4%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 L ++ +S++ + + P Y +WF + + + ++VPT + + + Sbjct: 1 MLNLDLDSLWQYIIESFSKSLNPASYKAWFGPAEPVQYIDQTLIVNVPTPLHRDYWTQKL 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I+ L QE V + K S P+ S T K + + Sbjct: 61 NGQISDLIQEVSGEKITV-----------LAKLPSDPNPLANSESVTTPKKVSVAENNNS 109 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S + + L+ R+ F TF+ G N++A AA ++AE Y NPLF + VGLGK Sbjct: 110 SSFLKETQLNDRYTFDTFVVGKGNQLAHAAALAVAEEPGVFY-----NPLFFYGGVGLGK 164 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + ++ +P+ +V Y+T+E F F S+I+ + R++DLLL+DD+Q Sbjct: 165 THLMHAIGHQMLENRPDAKVKYVTSESFANDFISSIQTKRQEEFRREYRSVDLLLVDDIQ 224 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+L D KQ+V ++DR P+E+ L R+ SR + G+SV + D Sbjct: 225 FFADKVGTQEEFFHTFNALYDDKKQIVLSSDRLPNEIPKLQQRLVSRFKWGLSVDITPPD 284 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 +E R +IL+N + E ++I ++ L ++A + ++ REL+GA ++ S Sbjct: 285 FETRIAILRN-----KAEAEHVSIPDDTLSYIAGQIDSNIRELEGALMRVEAFSSMTRTP 339 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 ++ +A E L +L +G++ K+ I IQ VAK+Y+++ DL +RV+++V PRQ+AMY Sbjct: 340 ISTSLAAEALKNLKVSGKSSKLTIPIIQDKVAKYYHVTIADLKGKKRVKSIVIPRQIAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 LS+ +T S P+IG FG +DHTTV+HA K+ + L TD TL+KEV L+ + + Sbjct: 400 LSRELTDASLPKIGNEFGGKDHTTVIHAHEKIAEALHTDTTLQKEVNELRAELQD 454 >gi|294053542|ref|YP_003547200.1| chromosomal replication initiator protein DnaA [Coraliomargarita akajimensis DSM 45221] gi|293612875|gb|ADE53030.1| chromosomal replication initiator protein DnaA [Coraliomargarita akajimensis DSM 45221] Length = 469 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 148/467 (31%), Positives = 240/467 (51%), Gaps = 12/467 (2%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ V++ LK+ D+Y WF LK + L+ P F WI+N YL+ I + Sbjct: 9 SLWESVNNELKSLFPADLYDMWFDDLKCVEQSEQKIVLAAPNEFNAIWIENNYLDVIAQQ 68 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + + +LV VA +V ++ K + + + Sbjct: 69 ARSFAGAQVEISVLVDEVADEAVTVERTNRLSAKSKQSDRVVPTVAARTEGAKAPQARRT 128 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ R F F+ GS N++A A+ ++A Y NPLF+ GLGKTHL+ A+ Sbjct: 129 LLNPRNTFENFVVGSGNQLAHAASIAVANAPGRAY-----NPLFVFGETGLGKTHLMHAV 183 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 A+ + PN R+ Y++ E F F AI++N + R +D LL+DD+ FL GK Sbjct: 184 AHQMLVNNPNARIAYVSTEKFTNEFIRAIQENKLAKFRKYYRTVDALLVDDIHFLSGKES 243 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N L +S +Q+ A+DRP +E+E L+ R+ SR Q G+ + DYE R +I Sbjct: 244 TQEEFFHTFNDLFESGRQIFLASDRPANEIERLENRLISRFQWGLVTDMQAPDYETRVAI 303 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L+ + + +++ ++ +A V+ + R ++GA ++ +S L + + Sbjct: 304 LRK-----KAIAMDITLDDSIVDFLAERVSRNVRRMEGALTRIASYNSLMNRQLDLDGVE 358 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 LLS L K+ +E IQ+ V+++Y I +DL+ RR ++V PRQVAMY+S+ +T Sbjct: 359 RLLSDLFQEEAASKVTVEQIQKKVSEYYQIRYSDLIGRRRTSSIVFPRQVAMYISRTLTS 418 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG FG RDH TV+HA ++VE M+E D T+K+ V+ L + +S Sbjct: 419 DPLKSIGDAFGGRDHGTVIHACKQVENMMEQDGTVKRAVDYLIKQLS 465 >gi|330994264|ref|ZP_08318192.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] gi|329758731|gb|EGG75247.1| Chromosomal replication initiator protein dnaA [Gluconacetobacter sp. SXCC-1] Length = 476 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 172/471 (36%), Positives = 274/471 (58%), Gaps = 20/471 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + RLK +VG Y +W +++ V + + L +PT FL+ W++ +Y + + L+ Sbjct: 15 WSRICERLKVEVGEVEYRTWLRQITVGPVDEDEITLYLPTRFLRDWVRGQYGDRLGTLWN 74 Query: 99 EEHSRIQGVEILVRSVALPSVE--KTASSPSITKLSPINTNISKSPIILGKQTISPV--- 153 E I+ VE+ V A + + + P SP + + P Sbjct: 75 AEVPAIRRVELQVARPATDAAPAGREDTPPVPAAPSPDRAAPRPAASAPVPEEPRPAEVR 134 Query: 154 --FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +PLD RF F TF+ G N A A+ +AE S + NPLF++ VGLGKTH Sbjct: 135 TDLAAPLDQRFTFDTFVVGKPNEFAYACARRVAEQPS----SPGFNPLFLYGGVGLGKTH 190 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ +I A + R+ + V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL Sbjct: 191 LMHSIG-AELVREGRVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFL 249 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ + +E Sbjct: 250 IGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFE 309 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 +R SIL+ ++ + + +VL +A +T++ REL+GA N+L+ + F +T Sbjct: 310 LRISILE-----AKATASGVVVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVT 364 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E ++L ++ +++ IE+IQR VA+H+NI D+ S RR R V RPRQVAMYL+ Sbjct: 365 LEATQDVLHDILK-AHDRRVTIEEIQRKVAEHWNIRLTDMSSARRARAVARPRQVAMYLA 423 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T RS PEIGR+FG+RDHTTV+HAV +V ++ D ++VELL+R++ Sbjct: 424 KQLTSRSLPEIGRKFGNRDHTTVIHAVSRVTGLMAEDPAFAEDVELLRRML 474 >gi|150025276|ref|YP_001296102.1| chromosomal replication initiator protein DnaA [Flavobacterium psychrophilum JIP02/86] gi|166201882|sp|A6GYW8|DNAA_FLAPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|149771817|emb|CAL43291.1| Chromosomal replication initiator protein DnaA [Flavobacterium psychrophilum JIP02/86] Length = 478 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 147/487 (30%), Positives = 251/487 (51%), Gaps = 25/487 (5%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 + ES++ S +K+ + Y +WF+ +K + N +++ VP+ F W++ Sbjct: 2 HTMNKTAESVWDNCLSFIKDNIQEQAYKTWFEPIKSVELTDNALYIQVPSKFFYEWLEEH 61 Query: 89 YLETITKLFQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 Y++ + +E + +I + + + T PS + SP+ T P+ Sbjct: 62 YVKLLKVALTKELGKNAKLLYKIKMENTYGNKLPFTEQLPSAHR-SPVRTQEIDVPVQQK 120 Query: 147 KQTISPVF----------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + F S L++ + F F+EG SNR+A +A ++A Sbjct: 121 NPELRNPFIIPGIRNLKIESQLNANYSFDNFLEGDSNRLARSAGMAVANKPG----GTSF 176 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPL I VGLGKTHL AI ++ P V+Y++AE F ++ +++ N + Sbjct: 177 NPLLIFGGVGLGKTHLAHAIGVEVKEKYPEKTVLYISAEIFTQQYIESVKKNNRNDFIHF 236 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 + ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR Sbjct: 237 YQLIDVLIIDDVQFLSGKTGTQDVFFHIFNYLHQNGKQVILTSDKAPVDMQDIEQRLLSR 296 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+S + DYE R SILKN L E + EE++ +VAR + ++ REL+GA Sbjct: 297 FKWGLSAEIHQPDYETRISILKNILYRDGVE-----MPEEIIEYVARNIKSNVRELEGAI 351 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 L+ + SF +T E+A +++ V +++ I+ IQ++V+ ++ + L S R Sbjct: 352 ISLIAQSSFNKKEVTLELAKQVVEKFVKN-VKREVSIDYIQKVVSDYFQLDLEVLQSKTR 410 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R VV+ RQ+AM+ +K T S IG + GDRDH TVLHA + V+ ++ TD KK V+ Sbjct: 411 KRHVVQARQLAMFFAKRYTKASLANIGSQIGDRDHATVLHACKTVDNLVTTDKQFKKFVD 470 Query: 495 LLKRLIS 501 + + +S Sbjct: 471 DINKKLS 477 >gi|282934242|ref|ZP_06339519.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] gi|297205283|ref|ZP_06922679.1| ATPase [Lactobacillus jensenii JV-V16] gi|281301716|gb|EFA93983.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] gi|297149861|gb|EFH30158.1| ATPase [Lactobacillus jensenii JV-V16] Length = 455 Score = 451 bits (1161), Expect = e-124, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 238/472 (50%), Gaps = 24/472 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNRYLE 91 + + + + +++ + Y +WF+ K S ++V K + + Sbjct: 3 DLQKFWDYFNKQMRQEYNEVAYNAWFKNTKPVSYNKETNELVIAVKNPIAKGYWEANLST 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + LP E P+ +P + + Sbjct: 63 KLIQTAYAYGN----------FEVLPIFEVDGDEPTERFKAPQPPKKVPERSVSPVKDDF 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 113 VAKNLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAIGHQMLCERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I+++ L ++A V+T+ REL+GA ++ + + Sbjct: 288 TRIAILRK-----KAESEGLVIDDDTLDYIASQVSTNIRELEGALVKVQAHATIEKADIN 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A + L+ L +++ ++I IQ +VA ++ + N+L +RVR +V PRQ+AMYLS Sbjct: 343 VNLARDALTDLKLVQKSRGLQISKIQEVVANYFQTTVNELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IG+ FG +DHTTV+HA K+EK + TD +K V LK+L+ Sbjct: 403 RDLTDASLPKIGQEFGGKDHTTVMHAYEKIEKDIRTDAEIKSAVYELKQLLD 454 >gi|58038492|ref|YP_190456.1| chromosomal replication initiation protein [Gluconobacter oxydans 621H] gi|71151799|sp|Q5FUU1|DNAA_GLUOX RecName: Full=Chromosomal replication initiator protein DnaA gi|58000906|gb|AAW59800.1| Chromosomal replication initiator protein DnaA [Gluconobacter oxydans 621H] Length = 479 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 170/468 (36%), Positives = 281/468 (60%), Gaps = 18/468 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E+ + V +LK++VG Y +W +++ + + + L +PT FL+ W++++Y E + Sbjct: 26 LETAWIRVREKLKSEVGEVEYRTWLRQIVLGPLEEDELTLYLPTRFLRDWVRSQYEERLQ 85 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L++ E I+GVE+ V+ LP V + + +++ + ++ Sbjct: 86 TLWRTEREDIKGVELQVKR-GLPEVSMGDAEDGEDGSGEGHELATQAAAPESRSDLA--- 141 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 PLD RF F TFI G N A A+ +AE S + NPLF++ VGLGKTHL+ Sbjct: 142 -VPLDPRFTFDTFIVGKPNEFAYACARRVAEKPS----SPGFNPLFLYGGVGLGKTHLMH 196 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + R + V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL GK Sbjct: 197 AIGTE-LTRTGKVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFLIGK 255 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L+D+ +Q++ +AD+ PS+L L+ R+R+RL G+ + +E+R Sbjct: 256 DNTQEEFFHTFNALVDAGRQIIVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRI 315 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 SIL+ ++ + ++ +VL ++A +TT+ REL+GA N+L+ +T + Sbjct: 316 SILE-----AKAKASGTHVPSKVLEYLAHKITTNVRELEGALNRLIAHADLVGRPVTLDT 370 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 ++L ++ +++ IE+IQR V++H+NI D+ S RR R V RPRQVAMYL+K + Sbjct: 371 TQDVLKDMLK-AHDRRVTIEEIQRKVSEHWNIRLTDMSSARRARAVARPRQVAMYLAKQL 429 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS PEIGR+FG+RDHTTV+HAV +V ++++ D + ++VELL+R++ Sbjct: 430 TSRSLPEIGRKFGNRDHTTVMHAVNRVTELMDQDTSFAEDVELLRRML 477 >gi|154503049|ref|ZP_02040109.1| hypothetical protein RUMGNA_00871 [Ruminococcus gnavus ATCC 29149] gi|153796290|gb|EDN78710.1| hypothetical protein RUMGNA_00871 [Ruminococcus gnavus ATCC 29149] Length = 456 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 134/476 (28%), Positives = 241/476 (50%), Gaps = 36/476 (7%) Query: 36 ESIFTIVSSRLKNQV--GPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E + + +++K + Y +W L + V + V++ V I+ +YL Sbjct: 5 EENWEQILNKMKLEYCSSNISYNTWIAPLTVYEVTDDTVYILVKLRASLEHIEEKYLLP- 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F+ + + G E V V V + K N ++ Sbjct: 64 ---FKVCIAEVTGYEYEVSFVTDDHVVIQEKKDTAVKKQQSNAIFEQA------------ 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS+N A A+ ++A+ Y NPLF++ VGLGKTHL+ Sbjct: 109 ---NLNPKYTFDTFVVGSNNNFAHAASLAVADSPGEIY-----NPLFLYGGVGLGKTHLM 160 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC------ALNLKDSLRNIDLLLIDD 267 +IA+ +++ P +V+Y+T+E F A++ ++ RN D+LLIDD Sbjct: 161 HSIAHFILEKDPTKKVLYVTSETFTNELIDALKIGKNGNELAMTTFREKYRNNDVLLIDD 220 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + Sbjct: 221 IQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISS 280 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE R +IL+ + + E + +I +EV+ ++A +T++ REL+G+ N+L+ + Sbjct: 281 PDYETRMAILRKKEELDGLE--RYHIPDEVMQYIANNITSNIRELEGSLNKLIALANLEN 338 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A E L +++ T+++ E I +V+ H+N+ +L +R +V PRQ+ Sbjct: 339 KPIDIPLAAEALKDMISPNNTREITPELIIEVVSDHFNVPAAELKGKKRNAEIVLPRQIV 398 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + MT IG G +DH +V H V+K+E ++TD L V ++K+ ++ Sbjct: 399 MYLCRKMTDTPLKTIGLILGGKDHASVSHGVKKIEHDVKTDEALNNTVNIIKKKLN 454 >gi|116619146|ref|YP_821302.1| chromosomal replication initiator protein DnaA [Candidatus Solibacter usitatus Ellin6076] gi|116222308|gb|ABJ81017.1| chromosomal replication initiator protein DnaA [Candidatus Solibacter usitatus Ellin6076] Length = 437 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 142/467 (30%), Positives = 241/467 (51%), Gaps = 33/467 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + + L+++V D Y +W + F + +++SVP +AW++ Y + I Sbjct: 2 NYWDQIRHYLQSKVSADGYDNWLKSTAFVGQNGDTLYVSVPDRETRAWLETEYTQLIQ-- 59 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 IQ + + VR V+ + + ++P+ T NT + + Sbjct: 60 -----GGIQALGLPVRHVSFEAEQSRPAAPAATIAVNANTEPDAAATV------------ 102 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ +F F++F+ G+ N+ A AA+S+A S Y NPLF++ VG+GKTHL+ AI Sbjct: 103 -LNPKFTFNSFVVGACNQFAHAAAKSVATNPSRSY-----NPLFLYGGVGMGKTHLMHAI 156 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 I + ++R++Y ++E FM S IR R D+LLIDD+Q L K Sbjct: 157 GRQLIDQFGSMRIIYTSSERFMNEMISCIRTERMQQFHQRYREADVLLIDDIQLLGNKER 216 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N L D KQ+V ++D PP ++ L R+RSR + G+ + D E + +I Sbjct: 217 TQEEFFHTFNELHDHQKQIVISSDSPPKDIPGLLERLRSRFEWGLMADIQPPDLETKMAI 276 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + E + + ++V +A ++ REL+GA +L+ S + ++A Sbjct: 277 LDK-----KAEIEGVELPDDVRTFMASKTKSNVRELEGALVKLIAYSSLTGTPIHLQMAQ 331 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++L HLV+ +++ ++ IQ+ VA+ ++I ++ L + VV PRQVAMYL K +T Sbjct: 332 QVLKHLVHVQ-DRRVTMDSIQKAVAEKFSIKQSQLKEKSNTKKVVYPRQVAMYLVKELTN 390 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIGR FG + HTTV+H++ K+EK ++D L + + L + Sbjct: 391 ASLPEIGRAFGGKHHTTVIHSINKIEKDRQSDPELNRLLHSLMDSLQ 437 >gi|124265194|ref|YP_001019198.1| chromosomal replication initiation protein [Methylibium petroleiphilum PM1] gi|167016902|sp|A2SBM4|DNAA_METPP RecName: Full=Chromosomal replication initiator protein DnaA gi|124257969|gb|ABM92963.1| chromosomal replication initiator protein [Methylibium petroleiphilum PM1] Length = 467 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 238/475 (50%), Gaps = 22/475 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN----IVHLSVPTNFLKAWIKNRYLET 92 +++ RL ++ + +W + L ++ + L VP F WI+N+Y Sbjct: 4 DVWSQGCERLATELPEQQFNTWIRPLPAAELVDRGDTAVATLRVPNRFKLDWIRNQYAAR 63 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK----Q 148 I + + + +++ + + P ++ +P +P Q Sbjct: 64 IESVLSDLAGKPVRLDLQLAAREAPP-RPSSDAPRSNGHPQAAGQWLGAPSSSNAGAYTQ 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P L++ F T + G +N++A TAA +A V NPLFI+ VGLG Sbjct: 123 ASAPTPTHRLNTALTFDTLVPGRANQMARTAALHVAGAPG-----VMYNPLFIYGGVGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ A+ NA ++ +P+ R++YL AE F+ + LK ++DLLLIDD+ Sbjct: 178 KTHLIHAVGNALLRDKPDARILYLHAEQFITDVVKNYQRKTFDELKAKYHSLDLLLIDDV 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF GK Q EF + +LL ++ +D P L +D R+ SR G++V + Sbjct: 238 QFFAGKERTQEEFFNAFEALLAKRAHIIMTSDTYPKGLADIDERLTSRFDAGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-P 386 + EMR +IL + + + + E+V VA+ V + REL+GA +++ F+ Sbjct: 298 ELEMRVAIL-----MKKSDVEGTPMPEDVAFFVAKNVRANVRELEGALRKVLAYARFSQK 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A E L L++ +++ +E+IQ+ VA Y I D+ S +R ++ RPRQ+AM Sbjct: 353 DINIALAREALKDLLSIQ-NRQVGVENIQKTVADFYKIKVADMYSKKRPASIARPRQIAM 411 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL+K +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 412 YLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIGGERGKNTELNQQLHVLEQTLK 466 >gi|257413825|ref|ZP_04744343.2| DNA replication initiator protein, ATPase [Roseburia intestinalis L1-82] gi|257202158|gb|EEV00443.1| DNA replication initiator protein, ATPase [Roseburia intestinalis L1-82] Length = 456 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 134/479 (27%), Positives = 252/479 (52%), Gaps = 37/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL-KAWIKN 87 ++ E + + S +K++ + + +W + L+ + V + +++ VP+ + ++I Sbjct: 5 MDKILEK-WDEILSTVKHEHDISDISFDTWIRPLEVYGVEGSTLYILVPSEQMTLSYISK 63 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +Y + E ++ ++ + P LS Sbjct: 64 KYYLPLKVTIAELTGTEYEIKFILPEQTKNIRTGNSGVPKKNALS--------------- 108 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 S L+ + F TF+ GS+NR A +A+ ++AE Y NPL+I+ GL Sbjct: 109 ---EKADRSNLNPNYTFDTFVVGSNNRFAQSASLAVAESPGEAY-----NPLYIYGGPGL 160 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLL 264 GKTHL+ +I + ++R PN +V+Y+T+E F +IR L++ R ID+L+ Sbjct: 161 GKTHLMHSIGHFILERNPNAKVLYVTSEEFTNEVIESIRSGNASAMNKLREKYRTIDVLM 220 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ GK Q EF H N+L + KQ++ +D+PP ++E+L+ RIRSR + G+ Sbjct: 221 VDDVQFIIGKESTQEEFFHTFNALHSAGKQIILTSDKPPKDMETLEDRIRSRFEWGLIAD 280 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 +G DYE R +IL+ + E + +++E+L ++A + ++ REL+GA N+L+ + Sbjct: 281 IGTPDYETRMAILRR-----KVEADDMKLSDEILNYIATNIKSNIRELEGALNKLLAYSN 335 Query: 384 FAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T EIA + L +++ + +++ + + +V +H+NIS + ++S R + RPR Sbjct: 336 LEKTDITMEIAMKELQNIITPDKPREITPQLVIEVVTEHFNISLDQMISKNRSNEIARPR 395 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AMYL K MT IG+ G RDH+T++H ++K+ E++ + +E +K+ I+ Sbjct: 396 QIAMYLCKNMTDIPLDSIGQLLGGRDHSTIIHGIKKIADEYESNENTRNLIETIKKKIN 454 >gi|121607005|ref|YP_994812.1| chromosomal replication initiation protein [Verminephrobacter eiseniae EF01-2] gi|121551645|gb|ABM55794.1| chromosomal replication initiator protein DnaA [Verminephrobacter eiseniae EF01-2] Length = 483 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 143/469 (30%), Positives = 245/469 (52%), Gaps = 17/469 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ + +L + + +W + L + + L V F WI+ +Y IT Sbjct: 28 QGLWQACAEQLARDLPEAQFNTWIKPLVAQVAQDFSKITLLVGNRFKLDWIRAQYASQIT 87 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L + + + +E+ + V SV +TA +P + P ++S G+ Sbjct: 88 ALLGDLYGQPMALELAL--VPRESVARTAHTPRPSASGPPGAPGAES-ASAGRDEAPQAL 144 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L++ F T +EGS+NR+A +A +A + H Y NPLF++ VGLGKTHL+ Sbjct: 145 RHRLNAALTFETLVEGSANRMARSAGMHVAGMPGHLY-----NPLFVYGGVGLGKTHLVH 199 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + +P +V+Y+ AE F+ + + K+ ++DLLLIDD+QF K Sbjct: 200 AVGNRLLASRPQAKVLYVHAEQFVSDVVRSYQRRTFDEFKERYHSLDLLLIDDVQFFANK 259 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR Sbjct: 260 DRTQEEFFNAFEALLTKKSHLVMTSDTYPKGLSNIHERLVSRFDSGLTVAIEPPELEMRV 319 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL I++ + + EEV VA+ V ++ REL+GA +++ F ++ ++ Sbjct: 320 AIL-----INKAQAESTEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIQL 374 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 375 AREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLTKEL 433 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 434 TQKSLPEIGESFGGRDHTTVLHAVRKIAAERQQLTELNQQLHVLEQTLK 482 >gi|86132708|ref|ZP_01051300.1| chromosomal replication initiator protein DnaA [Dokdonia donghaensis MED134] gi|85816662|gb|EAQ37848.1| chromosomal replication initiator protein DnaA [Dokdonia donghaensis MED134] Length = 475 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 132/484 (27%), Positives = 240/484 (49%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +S++ S +K+ + P Y +WF+ +K + N + + VP+ F W++ Y+ Sbjct: 1 MTLTAQSVWDNCLSFIKDNITPQAYKTWFEPIKAVKLTDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + + + +++ + +PS ++ N N Sbjct: 61 KLLKVALNKVLGENAKLVYVIKMENTYGNNQPFTERIPSANRSTMKSQEVDAPLKNKNPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFVIPGIRNLQIESQLNPNYNFENFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVQIKDKYPAKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQV 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L +E R +I+K +L E + EE++ +A + T+ REL+GA L Sbjct: 297 GLSAELQHPSFETRIAIIKQKLYQDGVE-----MPEEIVEFLANNIKTNVRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + SF +T ++A +++ + V +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAHSSFNKKEITLDLAKKIVDNYVK-HTKREVSIDYIQKIVSDYFQMDVETLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K +T S IG + G RDH TVLHA + V+ + TD +K VE L Sbjct: 411 IVQARQLAMFFAKKLTKASLASIGSQIGQRDHATVLHACKTVDNLASTDKQFRKYVEDLG 470 Query: 498 RLIS 501 + +S Sbjct: 471 KKLS 474 >gi|294101016|ref|YP_003552874.1| chromosomal replication initiator protein DnaA [Aminobacterium colombiense DSM 12261] gi|293615996|gb|ADE56150.1| chromosomal replication initiator protein DnaA [Aminobacterium colombiense DSM 12261] Length = 442 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 138/473 (29%), Positives = 249/473 (52%), Gaps = 33/473 (6%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 ++ + ++ + ++ + W + SV+++++ + VP F+K I R+ Sbjct: 1 MVDKDINVLWDDILKNIEETMPEGTADLWLKTCVPLSVMNDVLVIDVPNVFVKEQISKRF 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I + ++ Q +E+ V S A ++ A + Q Sbjct: 61 QNVIEDVLMDK-GYAQSLELKVASEARKDEQQRAERAA--------------------QH 99 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S L+ ++F++F+ G SNR+A A+ ++AE Y NPLFI VGLGK Sbjct: 100 TGTLPRSGLNPNYIFNSFVVGKSNRLAHAASLAVAETPGEAY-----NPLFIWGGVGLGK 154 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + + + +L+V Y+++E F+ F +I++N K R++D+LLIDD+Q Sbjct: 155 THLMHAIGHYVLNKNNSLKVTYVSSEKFINEFIQSIKNNRTQEFKSKYRSVDILLIDDIQ 214 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL K Q EF H N L S KQ+V +DRPP E+++++ R+ SR + G+ + + D Sbjct: 215 FLGNKGSSQEEFFHTFNQLHVSKKQIVICSDRPPKEIQNIEDRLVSRFEWGLVTDIQMPD 274 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + + + E+V+ +A+ V ++ REL+GA N+++ Sbjct: 275 LETRIAILQK-----KAQIRNYEVPEDVISFLAQNVPSNIRELEGALNRIIACAELNSEP 329 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E A + L ++ + ++ IQ++VA++++++ DL+ NRR + RQVAMY Sbjct: 330 ITEENATQWLKDIIRHNSKGPVSVDTIQQIVAENFSLTVEDLVGNRRTSDIALARQVAMY 389 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L + +T S +IG F +DHTTVLHA RK+ K++E +K+ V+ ++ + Sbjct: 390 LCRKLTDISLQQIGFSFKKKDHTTVLHAQRKISKLVEEQPRMKEIVDNIEAKL 442 >gi|325922759|ref|ZP_08184493.1| chromosomal replication initiator protein DnaA [Xanthomonas gardneri ATCC 19865] gi|325546755|gb|EGD17875.1| chromosomal replication initiator protein DnaA [Xanthomonas gardneri ATCC 19865] Length = 442 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 155/468 (33%), Positives = 238/468 (50%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVDQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E+ + + P +P F Sbjct: 61 VAYFVGNG---EVALAVGSRPRAPDPLPAPMAA-------------PSAPAAAPIVPFAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A++D K + ID LLIDD+QF GK Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALQDKAMDQFKRQFQQIDALLIDDIQFFAGKDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQQIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + +I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGADIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|83749733|ref|ZP_00946710.1| DnaA [Ralstonia solanacearum UW551] gi|207741915|ref|YP_002258307.1| chromosomal replication initiator protein dnaa [Ralstonia solanacearum IPO1609] gi|83723585|gb|EAP70786.1| DnaA [Ralstonia solanacearum UW551] gi|206593301|emb|CAQ60228.1| chromosomal replication initiator protein dnaa [Ralstonia solanacearum IPO1609] Length = 531 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 142/531 (26%), Positives = 242/531 (45%), Gaps = 71/531 (13%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNR 88 L + + + S++L++++ P + +W + L S ++ P F W+K++ Sbjct: 11 LTITMQDFWHAASAQLESELTPQQFKTWIKPLTPLSFDEQACMLRIAAPNRFKLDWVKSQ 70 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVA--LPSVEKTASSP-------------------- 126 + I L + V+ ++ A + + A +P Sbjct: 71 FSGRIQSLACDYWEMQVDVQFVLDPTAGQRQAAMQPALAPMPMQTQAAPAMPHAAPARPT 130 Query: 127 --------------------------SITKLSPINTNISKSPIILGKQTISPVF------ 154 + + S P + + P Sbjct: 131 AAPYRETAVAAAAHTAADIDVPVMDAAEARAQSYRMPASPPPAAMMSLSAPPAAPVDDTV 190 Query: 155 --GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F + G +N++A AA +A Y NPL+++ VGLGKTHL Sbjct: 191 HERSRLNPILTFDNLVTGKANQLARAAAVQVANNPGKSY-----NPLYLYGGVGLGKTHL 245 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI N + P R+ Y+ AE ++ A + + K ++DLLLIDD+QF Sbjct: 246 IHAIGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFS 305 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EM Sbjct: 306 GKNRTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEM 365 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + + + + EEV VA+ + ++ REL+GA +++ +F +T Sbjct: 366 RVAIL-----MKKAQAENVTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITI 420 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K Sbjct: 421 EVTREALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAK 479 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 480 ELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 530 >gi|16330393|ref|NP_441121.1| chromosomal replication initiation protein [Synechocystis sp. PCC 6803] gi|2506358|sp|P49995|DNAA_SYNY3 RecName: Full=Chromosomal replication initiator protein DnaA gi|1652883|dbj|BAA17801.1| chromosomal replication initiator protein; DnaA [Synechocystis sp. PCC 6803] Length = 447 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 136/471 (28%), Positives = 233/471 (49%), Gaps = 35/471 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+CE+++ + L Q+ + +W + S+ + + V F+ ++ Y Sbjct: 2 VSCENLWQQALAILATQLTKPAFDTWIKASVLISLGDGVATIQVENGFVLNHLQKSYGPL 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + + V+++ + S+ SS + +P Sbjct: 62 LMEVLTDLTGQEITVKLITDGLEPHSLIGQESSLPME--------------------TTP 101 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ FS F+ G +NR+A A+ ++AE NPLF+ VGLGKTHL Sbjct: 102 KNATALNGKYTFSRFVVGPTNRMAHAASLAVAESPGR-----EFNPLFLCGGVGLGKTHL 156 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAIA+ ++ PN +V Y++ E F +AIR + + + R+ D LLIDD+QF++ Sbjct: 157 MQAIAHYRLEMYPNAKVYYVSTERFTNDLITAIRQDNMEDFRSYYRSADFLLIDDIQFIK 216 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H NSL ++ KQVV A+DR P + L R+ SR G+ + + D E Sbjct: 217 GKEYTQEEFFHTFNSLHEAGKQVVVASDRAPQRIPGLQDRLISRFSMGLIADIQVPDLET 276 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + E ++ + +EV+ ++A T++ REL+GA + + S + + +T Sbjct: 277 RMAILQK-----KAEYDRIRLPKEVIEYIASHYTSNIRELEGALIRAIAYTSLSNVAMTV 331 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E +L+ V I +VA+HY + +LLSN R R V RQV MYL + Sbjct: 332 ENIAPVLNPPVEKVAAAPETI---ITIVAQHYQLKVEELLSNSRRREVSLARQVGMYLMR 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG +DHTTV+++ K+ ++ + D + + L I+ Sbjct: 389 QHTDLSLPRIGEAFGGKDHTTVMYSCDKITQLQQKDWETSQTLTSLSHRIN 439 >gi|78187975|ref|YP_376018.1| chromosomal replication initiation protein [Chlorobium luteolum DSM 273] gi|78167877|gb|ABB24975.1| chromosomal replication initiator protein DnaA [Chlorobium luteolum DSM 273] Length = 489 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 137/500 (27%), Positives = 250/500 (50%), Gaps = 30/500 (6%) Query: 12 ENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI 71 + + + EK + +E + +++ ++ + P + +WF ++ N Sbjct: 4 ADTMTLPEKQDTRHRNNDSIE---QKVWSSCLDAIREHINPLAFQTWFSPIRPLDYSGNQ 60 Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 + + VP+ F WI+ Y + + + ++ + + ++K+ P +L Sbjct: 61 LTIQVPSTFFYEWIEEHYSQFLKEALRDVIGPEARLMYSI------VMDKSQGQPVTMQL 114 Query: 132 SPINTNISKSPIILGK---------QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 P N K I K + F + L+S++ F T I G N +A AA+S Sbjct: 115 PPQNVQAEKKAEIFQKDGGKADRAFERDVERFETHLNSKYTFDTLIRGDCNSLAFAAAKS 174 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ NPL I+ VGLGKTH++QAI N + + +V+Y+++E F F Sbjct: 175 VAQNPGQN----AFNPLVIYGGVGLGKTHIMQAIGNTVRESRDASKVLYVSSEKFAIDFV 230 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 +AI++ RNID+L+IDD+QF GK Q E H+ N+L S KQ++ +ADRP Sbjct: 231 NAIQNGKIQEFSSFYRNIDVLIIDDIQFFSGKEKTQEEIFHIFNTLHQSNKQIILSADRP 290 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 +++ ++ R+ SR G+S + DYE R +I+ +S+ +N +E V+ +A Sbjct: 291 IKDIKGIEDRLISRFNWGLSADIQPPDYETRKAII-----LSKLHQSGVNFDENVIEFIA 345 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 VT + REL+G +L+ S + + L ++ TK++ ++ I++ V + Sbjct: 346 NNVTDNVRELEGCIVKLLAAQSLDKREIDLQFTKSTLKDIIR-HTTKQLNLDTIEKAVCE 404 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 +++I+ NDL + + + RQ+AMYLSK MT S IG FG RDH+TV+HA+ + Sbjct: 405 YFSITSNDLKGKSKKKEISVGRQIAMYLSKQMTDSSLKTIGLHFGGRDHSTVIHAINTIA 464 Query: 481 KMLETDITLKKEVELLKRLI 500 K +++ + +++ ++R I Sbjct: 465 KKVDSGGEDRGKIDEIRRRI 484 >gi|332662000|ref|YP_004444788.1| Chromosomal replication initiator protein dnaA [Haliscomenobacter hydrossis DSM 1100] gi|332330814|gb|AEE47915.1| Chromosomal replication initiator protein dnaA [Haliscomenobacter hydrossis DSM 1100] Length = 488 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 133/492 (27%), Positives = 245/492 (49%), Gaps = 33/492 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +++ ++N V + +WF+ +K + N + + VP + W++ Y+ Sbjct: 1 MVKDHATVWESCLQNIRNNVNMQAFRTWFEPIKPVRLDGNALTIQVPNKYFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTAS--------------------SPSITK 130 + + + +E + E+ S S + Sbjct: 61 SLLKTSIRSQLGDKGRLEYQILVSDSREEERRKSIAGNGMGNNYSNGNGSSVSLSDQVPY 120 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 + ++T+ K+P ++ V L+ + F +IEG NR+A +A +I+ Sbjct: 121 YNNVDTDSIKNPFVIPGIKKMKV-DPQLNPNYRFDNYIEGDCNRLARSAGHAISRKPGQ- 178 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 NPL I +VGLGKTHL QAI N + + P V+Y+++E F + + I++N Sbjct: 179 ---TSFNPLVIFGNVGLGKTHLAQAIGNEILDKFPTKTVLYVSSEKFTNQIIAGIKNNAI 235 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 ++ + ID+L++DD+QFL+GK Q F H+ N L + KQ++ +DRPP +L+ ++ Sbjct: 236 NDVVTFYQLIDVLIVDDIQFLEGKKKTQDIFFHIFNQLHQNGKQIILTSDRPPKDLQDME 295 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR + G+S L D E R +IL+ + + I ++V + + + R Sbjct: 296 ERLISRFKWGLSADLQAPDLETRIAILE-----YKMMQEGVEIAQDVTEFICYNIKNNIR 350 Query: 370 ELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+G L+ + S + ++A E++ + V T K++ +E IQ++VA ++ + Sbjct: 351 ELEGVLISLIAQSSLNRREIDIDLAKEVVRNFV-TEINKEITVEFIQKLVADYFKVPVET 409 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L R R++V RQ++MYL+K MT RS +G FG RDH+TV+++ R V+ ++ETD Sbjct: 410 LNGKTRKRSIVIARQLSMYLAKNMTDRSLKALGEVFGGRDHSTVIYSCRTVQDLMETDPF 469 Query: 489 LKKEVELLKRLI 500 K+ V L++ I Sbjct: 470 FKETVSDLEKKI 481 >gi|260912769|ref|ZP_05919255.1| ribosomal subunit interface protein [Pasteurella dagmatis ATCC 43325] gi|260633147|gb|EEX51312.1| ribosomal subunit interface protein [Pasteurella dagmatis ATCC 43325] Length = 453 Score = 451 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 150/454 (33%), Positives = 246/454 (54%), Gaps = 23/454 (5%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 + +++W + L+ N + L F+K + YLE +TK+ QE ++ Sbjct: 20 ISLTDFSTWLRPLQADFNTPNSIILYASNVFIKQKVDESYLEQLTKIAQELSG---NSDL 76 Query: 110 LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 +V+ E+ I + + + P + V S L+ + VF F+E Sbjct: 77 VVQVRVGVKPEEKTVQQGINQTAVTEDKVGSKPQM--------VVRSYLNPKHVFENFVE 128 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G SN++A AQ +A+ NPLF++ GLGKTHLL AI N + +PN RV Sbjct: 129 GKSNQLARAVAQKVADNPGE----TSSNPLFLYGGTGLGKTHLLHAIGNGILANKPNARV 184 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 +Y+ A F+ + +AIRDN K R++D LL+DD+QF K Q EF H+ N+L Sbjct: 185 LYIHANNFIQQLINAIRDNKMDEFKKFYRSLDALLVDDIQFFAEKEKTQEEFFHIFNNLF 244 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 D+ +Q++ +DR P E+E L+ R++SR G++ + + E R +IL + + E+ Sbjct: 245 DAGRQIILTSDRYPKEIEKLEERLKSRFGWGLTTAIEPPELETRVAIL-----LKKAEEK 299 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 +++ EEV + + + T+ R+L+GA N++ F +T + E L ++ K Sbjct: 300 NIHLPEEVAFFIGQKLRTNVRDLEGALNRVGANAEFMGAPITIDFVRETLKDMLALQ-DK 358 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 + +E+IQ+ VA++Y I +DL R R++ RPRQ+AM LSK +T RS PEIG+ FGD+ Sbjct: 359 LITVENIQKTVAEYYRIKVSDLKGKSRSRSIARPRQLAMALSKELTNRSLPEIGKSFGDK 418 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTVLHA RK+ ++ E + +L+++ L R +S Sbjct: 419 DHTTVLHACRKIAELREQEHSLEEDWSNLIRTLS 452 >gi|119355858|ref|YP_910502.1| chromosomal replication initiation protein [Chlorobium phaeobacteroides DSM 266] gi|119353207|gb|ABL64078.1| chromosomal replication initiator protein DnaA [Chlorobium phaeobacteroides DSM 266] Length = 490 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 134/471 (28%), Positives = 242/471 (51%), Gaps = 16/471 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++ ++ ++ P Y +WF +K + + + + VP+ F WI+ Y + + Sbjct: 25 QQVWDSCLEAIREKINPLAYKTWFSPIKPVNFSGSELTIQVPSQFFYEWIEENYSSFLKQ 84 Query: 96 LFQEEHSRIQGVEILV---RSVALP-SVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 ++ + + +S P ++E S ++ S ++ ++ + Sbjct: 85 ALKDVIGSEAKLMYSIVMDKSQGQPVTIELPHQSTPLSACSSDSSESTQIKNKEAFEKNL 144 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 F + L+ ++VF T I G N +A A++S+A+ NPL I+ VGLGKTH Sbjct: 145 QRFETHLNPKYVFETLIRGDCNSLAFAASKSVAQNPGLN----AFNPLVIYGGVGLGKTH 200 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 ++QAI N+ K + +V+Y+++E F F +AI++ RNID+L+IDD+QF Sbjct: 201 MMQAIGNSVRKNCLSEKVLYVSSEKFAVDFVNAIQNGKIQEFSSFYRNIDVLIIDDIQFF 260 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q E H+ N+L + KQ++ ++DRP +++ ++ R+ SR G+S + DYE Sbjct: 261 AGKEKTQEEIFHIFNTLHQTNKQIILSSDRPIKDIKGIEDRLISRFNWGLSADIQPPDYE 320 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +I+ +S+ E +N++E V+ +A VT + REL+G +L+ S + Sbjct: 321 TRKAII-----LSKLEQSGVNLDESVIEFIATNVTENVRELEGCIVKLLAAQSLDNREID 375 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 L ++ TK++ ++ I++ V + I+ NDL + + + RQ+AMYL+ Sbjct: 376 LHFTKSTLKDIIR-HTTKQLTLDTIEKAVCSFFAITPNDLKGKSKKKEIATGRQIAMYLA 434 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T S IG FG RDH+TV+HAV V +E +K++E LK+ I Sbjct: 435 KNLTESSLKTIGLHFGGRDHSTVIHAVNTVGNRMEQQSDERKKIEELKKRI 485 >gi|210614348|ref|ZP_03290167.1| hypothetical protein CLONEX_02381 [Clostridium nexile DSM 1787] gi|210150692|gb|EEA81701.1| hypothetical protein CLONEX_02381 [Clostridium nexile DSM 1787] Length = 461 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 140/483 (28%), Positives = 250/483 (51%), Gaps = 36/483 (7%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 + + E + + +LK + + + +W + L+ ++V + V++ VP +I + Sbjct: 1 MNIVAEK-WDEIIHKLKIEYGLSNVSFRTWIEPLEVYNVSDSTVYILVPLKSSVDYINQK 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 YL FQ + I G E V+ + + + IN Sbjct: 60 YLLP----FQVCIAEITGQEFEVKFITVDDSQN------------INVKNQDDTYKKNAT 103 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 S + L+ ++ F TF+ G +N A A+ +++E Y NPLF++ VGLG Sbjct: 104 QNSIFEQANLNPKYTFDTFVVGGNNNFAHAASLAVSESPGEIY-----NPLFLYGGVGLG 158 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--------ALNLKDSLRNI 260 KTHL+ +IA+ +++ P +V+Y+T+E F A++ ++ RNI Sbjct: 159 KTHLMHSIAHFILEKDPTKKVLYVTSETFTNELIEALKSGKTSGGNELAMTAFREKYRNI 218 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LLIDD+QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G Sbjct: 219 DVLLIDDVQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWG 278 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + + DYE R +IL+ + + + K +I+ EV+ ++A V ++ REL+G+ N+L+ Sbjct: 279 LIADISSPDYETRMAILRKKEELDGLQ--KYHISNEVMQYIATNVKSNIRELEGSLNKLI 336 Query: 380 FRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 H + +A E L +V+ + +++ E I +V++H+++S DL S +R + Sbjct: 337 ALHKLKNEEINIMLAAEALKDIVSPNKNRQITPELILEVVSEHFSVSIADLKSGKRNANI 396 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RQ+AMYL + MT IG G RDH+TV H V KV + ++T+ L +E++K+ Sbjct: 397 ANSRQIAMYLCRTMTDTPLKSIGIMLGGRDHSTVSHGVDKVTEDIKTNEALNNTIEIIKK 456 Query: 499 LIS 501 I+ Sbjct: 457 KIN 459 >gi|218244895|ref|YP_002370266.1| chromosomal replication initiation protein [Cyanothece sp. PCC 8801] gi|226735800|sp|B7JYF1|DNAA_CYAP8 RecName: Full=Chromosomal replication initiator protein DnaA gi|218165373|gb|ACK64110.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 8801] Length = 453 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 223/472 (47%), Gaps = 27/472 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + ++ V RL+ ++ + +W Q N + + V +F+ ++ Y Sbjct: 1 MNISPQYLWNQVLERLQIRLTRPAFETWIQDATVQEWKDNCLVIQVANSFILNHLQKTYQ 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + +++ ++ A S L+ I K Sbjct: 61 PIIAQEVASVVGYPVDIQLTTAEGETMAMTGEAQSYQEKSLTQIAPESPKL--------- 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ R+ FS F+ G +NR+A A+ ++AE NPLF+ VGLGKT Sbjct: 112 -----NQLNPRYTFSRFVVGPTNRMAHAASLAVAESPGR-----EFNPLFLCGGVGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA+ ++ PN +V Y++ E F +AIR + ++ R D LLIDD+QF Sbjct: 162 HLMQAIAHYRLELYPNAKVFYVSTEQFTNDLIAAIRQDSMERFREHYRRADFLLIDDIQF 221 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q E H N+L ++ KQVV A+DR P + +L R+ SR G+ + + D Sbjct: 222 IEGKEYTQEELFHTFNTLHEAGKQVVLASDRAPKRIPTLQDRLISRFSMGLIADIQVPDL 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + + + + +V+ ++A T++ REL+GA + + S + + Sbjct: 282 ETRMAILQK-----KAQYENMRLPRDVVEYIATNYTSNIRELEGALIRAIAYTSISGL-- 334 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L E E I R VA+ +S DL + R R + RQV MYL Sbjct: 335 SMTVQNIAPVLNPPVEQVPASPEVILRTVAESLKVSIEDLKGSSRRREISFARQVGMYLM 394 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTVL++ K+ K+ + D L + + L I+ Sbjct: 395 RQHTELSLPRIGEEFGGKDHTTVLYSCDKISKLQQKDWELSQMLSELSDRIN 446 >gi|313904725|ref|ZP_07838099.1| chromosomal replication initiator protein DnaA [Eubacterium cellulosolvens 6] gi|313470518|gb|EFR65846.1| chromosomal replication initiator protein DnaA [Eubacterium cellulosolvens 6] Length = 446 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 138/475 (29%), Positives = 252/475 (53%), Gaps = 43/475 (9%) Query: 35 CESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL-KAWIKNRYLE 91 E + + R+K + +G + +W + L+ H V N V + VPT + ++ +Y Sbjct: 4 IEEKWDEILERVKEEHELGEISFKTWIKPLRVHRVDGNDVTILVPTEQVGLDYVSKKYKL 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I E + + ++ A +++ KQ + Sbjct: 64 PIKAAIGELTGKDCEIYFVLPQDADKEIKE-------------------------KQIKN 98 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ R+ F TF+ GS+N+ A A+ ++AE Y NPLF++ VGLGKTH Sbjct: 99 ESILAGLNPRYTFDTFVVGSNNKFAHAASLAVAESPGKIY-----NPLFLYGGVGLGKTH 153 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC---ALNLKDSLRNIDLLLIDDM 268 L+ +IA+ ++ P +R+VY+T+E F AIR+ ++ RNID+LLIDD+ Sbjct: 154 LMNSIAHFILENHPGIRIVYVTSEEFTNEVIDAIRNGSNTAINKFREKYRNIDVLLIDDI 213 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H N+L + KQ++ ++DRPP +++ L+ RIRSR + G+ + + Sbjct: 214 QFIIGKESTQEEFFHTFNALHGAGKQIIISSDRPPKDMDILEDRIRSRFEWGLMADIQMP 273 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 DYE R +IL+ ++E +++++VL ++A V ++ REL+G+ N+++ + Sbjct: 274 DYETRMAILRK-----KQEIDGTSVDDDVLEYIASNVKSNIRELEGSLNKVIAFSNLEQK 328 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + E+A + L +++ E K + + I +VA+H+NI+ +D+ SN R R PRQ+ M Sbjct: 329 EIDIELAQKALRDIISPDEPKVITADYIINVVAEHFNITGDDIRSNIRARKYSYPRQIVM 388 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +L + MT + +I ++HTT++H ++K+E+ ++ ++LLK+ I+ Sbjct: 389 FLCRQMTTNNLQQIAEAICVQNHTTIMHGIKKIEQDYASNKETHDTIDLLKKKIN 443 >gi|311103225|ref|YP_003976078.1| chromosomal replication initiation protein [Achromobacter xylosoxidans A8] gi|310757914|gb|ADP13363.1| chromosomal replication initiation protein [Achromobacter xylosoxidans A8] Length = 487 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 147/496 (29%), Positives = 232/496 (46%), Gaps = 41/496 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETI 93 + + SRL+ ++ P ++W + L + L V P F W++ + I Sbjct: 2 KEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDETQAVLRVAAPNRFKLDWVRKNFSHQI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L E R V + S +P A P+ T S + P Sbjct: 62 EALAAEWFERPVQVLFELPSQGTAPRMPVAPVRAPQPAQTYPSGGSPAGGAPPPGPALAP 121 Query: 150 ISPVF---------------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 P S L++ F F+ G +N++A AA +AE Sbjct: 122 AQPAPAPATTAAAQAVNADAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPG 181 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 Y NPLF++ VGLGKTHL+ AI NA + +RV Y+ A+ ++ A + Sbjct: 182 TSY-----NPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRK 236 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + K ++DLLLIDD+QF GK Q EF + +++ KQ++ +D P EL Sbjct: 237 AFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSG 296 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 +D R+ SR G++V + + EMR +IL + + E + + EEV +A+ + ++ Sbjct: 297 IDSRLISRFDSGLTVAIEPPELEMRVAIL-----LRKAESEGVPMPEEVAFFIAKHLRSN 351 Query: 368 GRELDGAFNQLVFRHSFAP--ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 REL+GA +++ F +LT ++ E L L++ ++ +E+IQ+ VA Y I Sbjct: 352 VRELEGALRKVLAYARFHGRDVLTVDVCKEALKDLLSVSNG-QITVENIQKTVADFYKIK 410 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 D+ S RR + PRQVAMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 411 VADMYSKRRPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAK 470 Query: 486 DITLKKEVELLKRLIS 501 L + +L++ + Sbjct: 471 QAELNHTLHVLEQTLK 486 >gi|257057920|ref|YP_003135808.1| chromosomal replication initiation protein [Cyanothece sp. PCC 8802] gi|256588086|gb|ACU98972.1| chromosomal replication initiator protein DnaA [Cyanothece sp. PCC 8802] Length = 453 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 132/472 (27%), Positives = 222/472 (47%), Gaps = 27/472 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + ++ V RL+ ++ + +W Q N + + V +F+ ++ Y Sbjct: 1 MNISPQYLWNQVLERLQIRLTRPAFETWIQDATVQEWKDNCLVIQVANSFILNHLQKTYQ 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I + +++ ++ A S L+ I K Sbjct: 61 PIIAQEVASVVGYPVDIQLTTAEGETMAMTGEAQSYQEKSLTQIAPESPKL--------- 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ R+ FS F+ G +NR+A A+ ++AE NPLF+ VGLGKT Sbjct: 112 -----NQLNPRYTFSRFVVGPTNRMAHAASLAVAESPGR-----EFNPLFLCGGVGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA+ ++ PN +V Y++ E F +AIR + ++ R D LLIDD+QF Sbjct: 162 HLMQAIAHYRLELYPNAKVFYVSTEQFTNDLIAAIRQDSMERFREHYRRADFLLIDDIQF 221 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q E H N+L ++ KQVV A+DR P + +L R+ SR G+ + + D Sbjct: 222 IEGKEYTQEELFHTFNTLHEAGKQVVLASDRAPKRIPTLQDRLISRFSMGLIADIQVPDL 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + + + + +V+ ++A T++ REL+GA + + S + + Sbjct: 282 ETRMAILQK-----KAQYENMRLPRDVVEYIATNYTSNIRELEGALIRAIAYTSISGL-- 334 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + + L E E I R VA +S DL + R R + RQV MYL Sbjct: 335 SMTVQNIAPVLNPPVEQVPASPEVILRTVADSLKVSIEDLKGSSRRREISFARQVGMYLM 394 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTVL++ K+ K+ + D L + + L I+ Sbjct: 395 RQHTELSLPRIGEEFGGKDHTTVLYSCDKISKLQQKDWELSQMLSELSDRIN 446 >gi|313887738|ref|ZP_07821420.1| chromosomal replication initiator protein DnaA [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846347|gb|EFR33726.1| chromosomal replication initiator protein DnaA [Peptoniphilus harei ACS-146-V-Sch2b] Length = 449 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 139/476 (29%), Positives = 241/476 (50%), Gaps = 33/476 (6%) Query: 31 LEVNCESIFTIVSSRL-KNQVGPDVYASWFQRL--KFHSVLHNIVHLSVPTNFLKAWIKN 87 ++ +++ L K + Y++WF R+ K + ++VP+ F++ ++ N Sbjct: 1 MDKELSTMWESFLKELEKKSMSQVTYSTWFSRMLPKSIDYDEKKIIITVPSPFIRDYLVN 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 L E I G++ + ++ + I K Sbjct: 61 NKRHF--DLVGEALREITGIDFDISIISEDEATDQNPAGLINK----------------- 101 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + S L+ ++ F TF+ G SN A AA +++E NPLFI+ VGL Sbjct: 102 ---NFLSISRLNPKYTFETFVVGKSNEFAHAAALAVSEN-YENPQNAFSNPLFIYGGVGL 157 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI + +++ P +++Y+T+E F ++I+ N ++ R +DLLLIDD Sbjct: 158 GKTHLMHAIGHFVLEQDPTKKILYVTSEQFTNELINSIQTNKNEEFRNKYRKVDLLLIDD 217 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ K Q EF H N L + KQ+V +D+PP +++SL+ R+ SR G+ V +G Sbjct: 218 IQFIADKDRTQEEFFHTFNELHEQNKQIVLTSDKPPKDIKSLEERLISRFAWGLVVDIGP 277 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA- 385 D E R +IL+ + + +++EV+ +A V ++ REL+GA ++++ Sbjct: 278 PDLETRIAILRK-----KADSEGFEVSQEVMTFIAENVRSNIRELEGALSRVMAYSKLTD 332 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++ E A +L + T K++ E I+ VAK Y ++ +D S +R + + PRQ+A Sbjct: 333 SDISVESAAIVLRDIYETKAKKQITAEYIKAEVAKKYGLNLDDFNSRKRTKAIAYPRQIA 392 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MY+++ +T S P+IG FG RDH+TV+HA K+ K LE D K E+ L + I Sbjct: 393 MYITRELTDLSLPKIGDVFGGRDHSTVIHAYDKISKDLEEDPIFKIEITNLIKEIK 448 >gi|58698404|ref|ZP_00373316.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila ananassae] gi|58535086|gb|EAL59173.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila ananassae] Length = 464 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 170/464 (36%), Positives = 265/464 (57%), Gaps = 34/464 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + + L N G Y SW LKF S + V LSV T F+K WI Y++ I L+Q Sbjct: 30 WEKIQNCLYNLYGEATYNSWLSSLKFVSSRNGEVLLSVSTRFIKEWITVHYMKKILSLWQ 89 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E I+ ++I V N + + I+ ++ + GSPL Sbjct: 90 SEDKSIRSIDIQVIE---------------------ERNSNFNVILKNREESNHNLGSPL 128 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F F+ G N +A TAA+ +AE + NPLF++ VGLGKTHL+ AIA Sbjct: 129 DPRFTFDNFVVGKPNELAFTAAKRVAESIDP---ILGSNPLFLYGGVGLGKTHLMHAIAW 185 Query: 219 ASIKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 + P+ + VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Sbjct: 186 HIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDS 244 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R I Sbjct: 245 TQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGI 304 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E Sbjct: 305 LQ-----AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASE 359 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T + Sbjct: 360 TLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQK 418 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 S P+IGR FG RDH TV+HAV++VE ++TD E+ LK++ Sbjct: 419 SLPDIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEINRLKKM 462 >gi|319951594|ref|YP_004162861.1| chromosomal replication initiator protein dnaa [Cellulophaga algicola DSM 14237] gi|319420254|gb|ADV47363.1| chromosomal replication initiator protein DnaA [Cellulophaga algicola DSM 14237] Length = 474 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 135/484 (27%), Positives = 244/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V S++ +K+ + P + +WF+ +K + + + VP+ F W++ Y+ Sbjct: 1 MSVTAISVWNNCLDFIKDNIQPQAFKTWFEPIKPVKLTDKALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + +E + +++ + +PS ++ ++ + N Sbjct: 61 KLLKVSLTKELGESAKLVYIIKMENTYGNREPFTEKIPSSNRSTVPAQELDVAIKSKNPQ 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFIIPGIRNIKIESQLNPNYNFENFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEIKDKYPERTVLYISAEKFTQQYIESVKKNTRNDFIHFYQL 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SILKN+L E + ++++ +VA+ + T+ REL+GA L Sbjct: 297 GLSAELQNPDYETRISILKNKLYRDGVE-----MPDDIIDYVAKHIKTNIRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF +T ++A +++ V +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAQSSFNKKEVTLDLAQQVVEKFVKN-TKREVSIDYIQKVVSDYFEMDVATLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + ETD +K ++ L Sbjct: 411 IVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLAETDKQFRKYIDDLT 470 Query: 498 RLIS 501 + S Sbjct: 471 KKFS 474 >gi|256851674|ref|ZP_05557062.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 27-2-CHN] gi|260661609|ref|ZP_05862521.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 115-3-CHN] gi|256615632|gb|EEU20821.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 27-2-CHN] gi|260547666|gb|EEX23644.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 115-3-CHN] Length = 455 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 237/472 (50%), Gaps = 24/472 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNRYLE 91 + + + + +++ + Y +WF+ K S ++V K + + Sbjct: 3 DLQKFWDYFNKQMRQEYNEVAYNAWFKNTKPVSYNKETNELVIAVKNPIAKGYWEANLST 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + LP E P+ +P + + Sbjct: 63 KLIQTAYAYGN----------FEVLPIFEVDGDEPTERFKAPQPPKKVPERSVSPVKDDF 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 113 VAKNLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAIGHQMLCERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I+++ L ++A V+T+ REL+GA ++ + + Sbjct: 288 TRIAILRK-----KAESEGLVIDDDTLDYIASQVSTNIRELEGALVKVQAHATIEKADIN 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A + L+ L +++ ++I IQ +VA ++ + N+L +RVR +V PRQ+AMYLS Sbjct: 343 VNLARDALTDLKLVQKSRGLQISKIQEVVANYFQTTVNELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S +IG+ FG +DHTTV+HA K+EK + TD +K V LK+L+ Sbjct: 403 RDLTDASLQKIGQEFGGKDHTTVMHAYEKIEKDIRTDAEIKSAVYELKQLLD 454 >gi|213019238|ref|ZP_03335045.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995347|gb|EEB55988.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 473 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 169/464 (36%), Positives = 266/464 (57%), Gaps = 34/464 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + + L N G Y SW L+F S + V LSVPT F+K WI Y+E I L+Q Sbjct: 39 WEKIQNYLHNLYGEATYNSWLSSLRFISNRNGEVLLSVPTRFIKEWITVHYMEKILSLWQ 98 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E + ++I + N + + I+ ++ + GSPL Sbjct: 99 SEDQSVCSIDIQLIE---------------------ERNSNSNTILKNREENNHNLGSPL 137 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+RF F F+ G SN +A TAA+ +AE + NPLF++ VGLGKTHL+ AIA Sbjct: 138 DTRFTFDNFVVGKSNELAFTAAKRVAESIDPISGS---NPLFLYGGVGLGKTHLMHAIAW 194 Query: 219 ASIKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 + P+ + VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Sbjct: 195 DIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDS 253 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R I Sbjct: 254 TQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGI 313 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E Sbjct: 314 LQ-----AKVERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSMTVESASE 368 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + + + IE+IQ+ +A+ +NI D+ SNRR+R++ RPRQ+AMY +K T + Sbjct: 369 TLIDLLRSNH-RSITIEEIQKKIAEFFNIKIADMQSNRRLRSLARPRQIAMYFAKKFTQK 427 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 S P+IGR FG RDH TV+HAV++VE + TD E+ LK++ Sbjct: 428 SLPDIGRNFGGRDHATVIHAVKQVENFIRTDPKFADEINRLKKM 471 >gi|94984110|ref|YP_603474.1| chromosomal replication initiator protein DnaA [Deinococcus geothermalis DSM 11300] gi|94554391|gb|ABF44305.1| chromosomal replication initiator protein DnaA [Deinococcus geothermalis DSM 11300] Length = 470 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 153/478 (32%), Positives = 258/478 (53%), Gaps = 18/478 (3%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 K + V + I+ V ++ + Y +WF +K V + + V +F + W + Sbjct: 1 MKGEVRVITQEIWADVLGYVRKNISEVEYHTWFAPVKNLGVQDGALVIGVRNSFAQEWFR 60 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 YLE + + ++ + V LP+ + PS +P N++ +S Sbjct: 61 KHYLELLEDALRALGAQNPQISFQV----LPASQDALLLPSDPPPAPANSSPGRSLPGQP 116 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VG Sbjct: 117 PSQVPSESRQVLNPKYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVG 171 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ A+ + ++R P+ R+ Y++ E F +AIRD+ ++ R++DLLL+D Sbjct: 172 LGKTHLMHAVGHYIMERFPDKRIEYVSTESFTNELINAIRDDKTTQFRNRYRSVDLLLVD 231 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK Q EF H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ + Sbjct: 232 DIQFLAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQ 291 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 ++E R +ILK E +++I +EVL +AR VT++ REL+GA ++V S Sbjct: 292 TPEFETRVAILK-----MNAEHNRIDIPQEVLELIARQVTSNIRELEGALMRVVAFASLN 346 Query: 386 PI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + + +A + LS++ K + + ++ R VA H+ ++ + + R R VV PRQV Sbjct: 347 NVPFSRAVAAKALSNVFAPQVVK-VEMGEVLRAVATHFGLAPEVIRGSGRAREVVVPRQV 405 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL + +T S PEIG+ FG RDH+TV+HAV KV + + D L VE L+R + + Sbjct: 406 AMYLIRELTDHSLPEIGQFFG-RDHSTVMHAVSKVSEQMSKDPELAATVEALRRQLQD 462 >gi|332685535|ref|YP_004455309.1| chromosomal replication initiator protein DnaA [Melissococcus plutonius ATCC 35311] gi|332369544|dbj|BAK20500.1| chromosomal replication initiator protein DnaA [Melissococcus plutonius ATCC 35311] Length = 447 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 147/482 (30%), Positives = 250/482 (51%), Gaps = 39/482 (8%) Query: 22 PNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL 81 P+V+ + LEV +SI + + +W + + +N + L VP+ Sbjct: 2 PDVETFWKNLEVAYQSI-----------LSVPSFDAWIKTTHPLKLENNQLWLEVPSAVH 50 Query: 82 KAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS 141 K + + I E ++ G E++ V +++ K S Sbjct: 51 KNYWEKNLAAKIV----EMGFKLTGTEVIPFFVVAGEMQENLVEEKKGKKS--------- 97 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 L + + + L+ ++ F TF+ G N++A AA +AE Y NPLF Sbjct: 98 ---LEEPFDTQTKKAMLNPKYSFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFF 149 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ AI + QP+ +V Y+++E F F ++I+ + + RN+D Sbjct: 150 YGGVGLGKTHLMHAIGHQMCLNQPDAKVKYVSSETFTNEFINSIQTKNSEEFRKEYRNVD 209 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLL+DD+QFL K EF H N L + KQ+V +DRPP++++ L R+ SR G+ Sbjct: 210 LLLVDDIQFLAEKEATLEEFFHTFNDLYNDNKQIVLTSDRPPNDIQKLPERLVSRFAWGL 269 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 SV + D E R +IL+ + + +L I ++ L ++A + ++ REL+GA ++ Sbjct: 270 SVDITPPDLETRIAILRK-----KADAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQA 324 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + +T +A + L L + G K++ I IQ VAK+Y+I DL +R++++V Sbjct: 325 YGTINGEDITTSLAADALKSLKSAGNKKQLSILQIQEEVAKYYHIPLKDLKGKKRIKSIV 384 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PRQ++MYLS+ MT S P+IG FG +DHTTV+HA K++++++ D ++KEV LK + Sbjct: 385 VPRQISMYLSREMTENSLPKIGAEFGGKDHTTVIHAHEKIQQLMKKDPAIQKEVNELKNI 444 Query: 500 IS 501 ++ Sbjct: 445 LN 446 >gi|312134083|ref|YP_004001421.1| chromosomal replication initiator protein dnaa [Caldicellulosiruptor owensensis OL] gi|311774134|gb|ADQ03621.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor owensensis OL] Length = 454 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 148/480 (30%), Positives = 251/480 (52%), Gaps = 39/480 (8%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPD----VYASWFQRLKFHSVLHN-IVHLSVPTNFLKAW 84 ++ + ++ + +K ++ P Y +WF+ L N + L +F + Sbjct: 1 MVDYDVNEVWEKIKEVIKKELNPSPTDISYNTWFESLVPVCFDDNDTLILRAFADFHRDI 60 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + NRY I ++ +S +++++ N + Sbjct: 61 VINRYSLLILNSLRQLYSPHLSLKVIL----------------------PNEVERYKKFL 98 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 K P + L+ ++ F TF+ G++NR+A AA ++AE NPLFI+ Sbjct: 99 KQKTDEKPEITTSLNPKYTFETFVVGNNNRLAHAAALAVAETP---PGEKTYNPLFIYGG 155 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LL Sbjct: 156 VGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLL 215 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ Sbjct: 216 IDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITD 275 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +IL + + + + +L +A + T+ REL+GA N+++ Sbjct: 276 IQPPDFETRIAILSKKCQLEGT-----PVPQHILEFIASKIETNIRELEGALNKILAYSK 330 Query: 384 FA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +T E+A++ L ++T K++ IEDIQ VA ++NI D S+RR R V Sbjct: 331 LMAPDKEITLELAEKALKEFIDTNTKKELTIEDIQAEVASYFNIKLEDFKSSRRSRNVAF 390 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ +D + VE +K+ + Sbjct: 391 PRQIAMYLARELTNISLPKIGEAFGGKDHTTVLHACEKIKELINSDHNTRNVVETIKKRL 450 >gi|330822654|ref|YP_004385957.1| chromosomal replication initiator protein dnaA [Alicycliphilus denitrificans K601] gi|329308026|gb|AEB82441.1| Chromosomal replication initiator protein dnaA [Alicycliphilus denitrificans K601] Length = 473 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 142/473 (30%), Positives = 244/473 (51%), Gaps = 18/473 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYL 90 + + ++ + +L + + +W + L + V L V F WI+ +Y Sbjct: 15 DSAGQGLWQACTEQLAQDLPEQQFNTWIKPLVAQVSPDFSKVTLLVANRFKLDWIRAQYA 74 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I+ L +E + + +E+ + SV +T P + + ++ Sbjct: 75 GRISALLEELYGQPVTLELAL--AQRESVARTYVRPVPASI--EAPAANAPAGAAAEEPP 130 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + F + L+ F T +EG++NR+A +AA +A H Y NPLFI+ VGLGKT Sbjct: 131 AGAFRTRLNPALTFETLVEGTANRMARSAAMHVAGSPGHLY-----NPLFIYGGVGLGKT 185 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ A+ N + +P+ +V+Y+ AE F+ + + + K+ ++DLLLIDD+QF Sbjct: 186 HLVHAVGNKLLADRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQF 245 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF + +LL +V +D P L ++ R+ SR G++V + + Sbjct: 246 FANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPEL 305 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 EMR +IL N+ E + EEV VA+ V ++ REL+GA +++ F + Sbjct: 306 EMRVAILINKARAEHAE-----MPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEV 360 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL Sbjct: 361 SIQLAREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYL 419 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 420 AKELTQKSLPEIGELFGGRDHTTVLHAVRKIGAERQQLTELNQQLHVLEQTLK 472 >gi|114704371|ref|ZP_01437279.1| chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] gi|114539156|gb|EAU42276.1| chromosomal replication initiation protein [Fulvimarina pelagi HTCC2506] Length = 504 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 249/488 (51%), Positives = 323/488 (66%), Gaps = 24/488 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E I V++RLK Q+GP+++ASWFQR+ I +SVPT FL++WI+ Y E +T+ Sbjct: 20 EMIMDRVNARLKAQLGPEIFASWFQRMHLDHAGKGICQVSVPTAFLRSWIRGHYQEMLTE 79 Query: 96 LFQEEHSRIQGVEILVRSVALPS--------VEKTASSPSITKLSPINTNISK-SPIILG 146 F+ E V+I+VRS + A SPS S N+ + + + Sbjct: 80 AFKAEVPGTLRVDIVVRSAVRGGGVNIRKHGRDLEAGSPSGLAKSGQPANVVEFAARDVA 139 Query: 147 KQTISPV------------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 P GSPLD R+VF TF+EG++NRVA+ A ++IAE G + Sbjct: 140 SGEARPTRSKTVGVANGCEIGSPLDPRYVFDTFVEGTANRVAMAAGRAIAEN---GPQSF 196 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 R NPLFIHA VGLGKTHLLQAIANA+ R RVVYLTAEYFMWRFASAIRDN AL+LK Sbjct: 197 RFNPLFIHAGVGLGKTHLLQAIANAAAGRDDAPRVVYLTAEYFMWRFASAIRDNKALDLK 256 Query: 255 DSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 ++LR D+L+IDD+QFLQGK IQ EFCHLLN+L+DSAK V+ AADRP ELESLDPR+RS Sbjct: 257 ETLRGTDVLIIDDVQFLQGKSIQQEFCHLLNALIDSAKHVICAADRPAKELESLDPRVRS 316 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 RL G+++ L DY MR I++ R+ EDP ++EE + +AR V +GR+L+GA Sbjct: 317 RLSNGITLELATPDYAMRREIIEMRIRALAAEDPTFVLSEETIDAIARRVDGTGRDLEGA 376 Query: 375 FNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 FNQ+ FRHS L E E+L+ T +++RIEDI + V++HYNISR D+LS RR Sbjct: 377 FNQIAFRHSLGQPLNPEAIVEILAQFSRTSAERRVRIEDILKFVSRHYNISRTDILSARR 436 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 RT+VRPRQ+AMYL+K MTPRS PEIGRRFG RDHTTVLHAVRK+E D +E++ Sbjct: 437 TRTIVRPRQIAMYLAKTMTPRSLPEIGRRFGGRDHTTVLHAVRKIEAERGKDDAFSEELD 496 Query: 495 LLKRLISE 502 +++R+I E Sbjct: 497 VIRRMIEE 504 >gi|295135425|ref|YP_003586101.1| chromosomal replication initiator protein DnaA [Zunongwangia profunda SM-A87] gi|294983440|gb|ADF53905.1| chromosomal replication initiator protein DnaA [Zunongwangia profunda SM-A87] Length = 475 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 133/484 (27%), Positives = 240/484 (49%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +S++ + +K+ + P Y +WF+ ++ + + + VP+ F W++ Y+ Sbjct: 1 MSKTAQSVWNSCLAFIKDNISPQAYKTWFEPIQAVKLTDCALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + E + +++ + +PS ++ + + N N Sbjct: 61 KLLKVSLTRELGEKAKLVYVIKMENTYGNKLPFTEKIPSTQRANMTSQEVDVPVKNKNPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFVIPGIRNVKIESQLNPSYNFENFLEGESNRLARSAGLAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQI 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L D+E R SI+KN+L E + EE++ +A + + REL+GA L Sbjct: 297 GLSAELQHPDFETRVSIIKNKLYRDGVE-----MPEEIVEFLANNIKANIRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + SF +T E+A +++ + V +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAHSSFNKKDVTLELAKKIVDNYVKN-TKREVSIDYIQKVVSDYFQMDVETLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD KK VE L Sbjct: 411 IVQARQLAMFFAKKFTKASLASIGSQIGSRDHATVLHACKTVDNLASTDKQFKKFVEDLN 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|254429576|ref|ZP_05043283.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] gi|196195745|gb|EDX90704.1| chromosomal replication initiator protein DnaA [Alcanivorax sp. DG881] Length = 474 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 160/482 (33%), Positives = 259/482 (53%), Gaps = 25/482 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV-HLSVPTNFLKAWIKNRYLETI 93 E ++ +RL++++ + W + L+ + L P F+ W++++YL+ I Sbjct: 2 SEELWQRCLTRLEDELPSQQFNMWIRPLQVAASADGAELTLFAPNRFVVDWVRDKYLDRI 61 Query: 94 TKLFQEEHSRIQ---GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ++ E S +E+ + P S PI T + Sbjct: 62 GEVLGELQSGPLPQLRLEVGSTRASTPVAASFNGSAPAASSGPITTPAVAPAPRQPESDS 121 Query: 151 SP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P S L++ F FSTF+EG SNR+A AAQ +AE + + NPL + Sbjct: 122 RPQPTALGGARKHRSNLNTGFTFSTFVEGKSNRMAAAAAQQVAENPA----SHGYNPLLL 177 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ A+ N ++R PN +VVYL +E F+ SA+R+ K R++D Sbjct: 178 YGGVGLGKTHLMHAVGNELLRRNPNAKVVYLHSERFVADMISALRNKTINEFKRFYRSVD 237 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QF K Q EF H N+LL++ +Q++ D+ P E++ L+ R++SR G+ Sbjct: 238 ALLIDDIQFFACKEQSQEEFFHTFNALLENGQQIILTCDKFPKEVDGLEERLKSRFGWGL 297 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S P+ + E R +ILK + E+ K+++ + +A+ + ++ REL+GA +++ Sbjct: 298 SQPMEPPELETRVAILKK-----KAEEAKVDLPNDAAFFIAQRIRSNVRELEGALRRVIA 352 Query: 381 RHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F + + E L L+ +++ I++IQR+VA++Y I NDLLS RR R+V Sbjct: 353 HVRFTGAQIDIGLIKEALKDLIALQ-ARQISIDNIQRIVAEYYKIKINDLLSPRRTRSVA 411 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQVAM LSK +T S PEIG FG RDHTTVLHA RKV ++ E++ ++++ + L R Sbjct: 412 RPRQVAMALSKELTSHSLPEIGENFGGRDHTTVLHACRKVLELRESNPEIEEDYQNLLRT 471 Query: 500 IS 501 ++ Sbjct: 472 LT 473 >gi|120434989|ref|YP_860675.1| chromosomal replication initiation protein [Gramella forsetii KT0803] gi|117577139|emb|CAL65608.1| chromosomal replication initiator protein DnaA [Gramella forsetii KT0803] Length = 475 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 130/484 (26%), Positives = 242/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +S++ S +++ + P Y +WF+ ++ + + + VP+ F W++ Y+ Sbjct: 1 MSKTAQSVWNNCLSFIQDNITPQAYKTWFEPIQAVKLTDCALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + E + +++ + +PS ++ + + N + Sbjct: 61 KLLKVSLTRELGEKAKLVYVIKMENTYGNKLPFTEKIPSTQRAQMTSQEVDVPIKNKSPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFIIPGIRNVKIESQLNPNYNFDNFLEGESNRLARSAGLAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVEIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQI 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLVVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L D+E R SI+K++L E + E+++ +A + T+ REL+GA L Sbjct: 297 GLSAELQHPDFETRVSIIKSKLYRDGVE-----MPEDIVEFLANNIKTNIRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + SF +T ++A +++ + V +++ I+ IQ++V+ ++ + + L S R R Sbjct: 352 IAHSSFNKKDITLDLAKKIVDNYVKN-TKREVSIDYIQKVVSDYFQMDVDTLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD KK VE L Sbjct: 411 IVQARQLAMFFAKKFTKASLASIGSQIGSRDHATVLHACKTVDNLASTDKQFKKFVEDLS 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|198282149|ref|YP_002218470.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665582|ref|YP_002427662.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246670|gb|ACH82263.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517795|gb|ACK78381.1| chromosomal replication initiator protein DnaA [Acidithiobacillus ferrooxidans ATCC 23270] Length = 452 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 256/470 (54%), Gaps = 34/470 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ + +L+ Q + +W + L+ + N + L P F+ W++ R ++ + Sbjct: 12 NGDALWAALCVQLQEQTTAQQFNTWLRPLR-GELHGNELRLFAPNTFVMEWVRERLIDLL 70 Query: 94 TKLFQEEH-SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + E + +E+ P P T +P I I P Sbjct: 71 EAVLAELAPGMLLRLELSPEQGLAPV--------------PAGTATPSAPSI-----IEP 111 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 G+ L+ F F +++EG SN++A+ AA+ +A+ Y NPL+I+ VGLGKTHL Sbjct: 112 RNGNRLNPGFSFQSYVEGKSNQLAVAAARQVAQNPGKSY-----NPLYIYGGVGLGKTHL 166 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QA+ NA ++R + +V+Y+++E F+ +++ N + K R +D LLIDD+QF Sbjct: 167 MQAVGNAILQRNADAKVLYVSSEGFIMDMVRSLQHNTINDFKQRYRKLDALLIDDIQFFA 226 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D +Q++ DR P E++ L+ R++SR G++V + HD E Sbjct: 227 GKDRTQEEFFHTFNALFDGGRQIIITCDRYPKEVDRLEERLQSRFGWGLTVAIQPHDLET 286 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R +I+ + + E+ +++ EEV +A + + REL+GA ++V +F Sbjct: 287 RMAIV-----LCKAEESGVDLPEEVAFFIAEKIRSHVRELEGALRRVVAHVNFTHKPYNL 341 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + A E L L++ + + +++IQ++VA++++I +D+ S RR R + RPRQVAM L+K Sbjct: 342 DTAREALRDLIDVQ-KRMVSLDNIQKVVAEYFHIRGSDMQSKRRSRNIARPRQVAMCLTK 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S PEIG FG RDHTTVLHA R++EK+ + + ++ L R++ Sbjct: 401 ELTNHSLPEIGEAFGGRDHTTVLHACRQIEKLRLEETQMDEDYRNLLRIL 450 >gi|66766353|ref|YP_241115.1| chromosomal replication initiation protein [Xanthomonas campestris pv. campestris str. 8004] gi|81307653|sp|Q4V0S8|DNAA_XANC8 RecName: Full=Chromosomal replication initiator protein DnaA gi|66571685|gb|AAY47095.1| chromosomal replication initiator [Xanthomonas campestris pv. campestris str. 8004] Length = 442 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 153/468 (32%), Positives = 235/468 (50%), Gaps = 29/468 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + P+ +W + L+ + + L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPPEDVHTWLKPLQAED-RGDSIVLYAPNAFIVEQVRERYLPRIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E+ + + P +P ++ F Sbjct: 61 LAYFAGNG---EVALAVGSRPR-------------APEPLPAPQAVASAPAAAPIVPFAG 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LDS + F+ F+EG SN++ L AA A+ NPL ++ S GLGKTHL+ A Sbjct: 105 NLDSHYTFANFVEGRSNQLGLAAAIQAAQKPG----DRAHNPLLLYGSTGLGKTHLMFAA 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KL 275 NA + P +V+YL +E F A+ D K ID LLIDD+QF G Sbjct: 161 GNALRQANPAAKVMYLRSEQFFSAMIRALHDKAMDQFKRQFHQIDALLIDDIQFFAGMDR 220 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D + ++ DR P E+E L+PR++SRL G+SV + D+E R +I Sbjct: 221 TQEEFFHTFNALFDGRQHIILTCDRYPREVEGLEPRLKSRLAWGLSVAIDPPDFETRAAI 280 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N LV R +F +T E A Sbjct: 281 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLVARANFTGRSITVEFAQ 335 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 336 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQMKDLLSKRRTRSLARPRQVAMALAKELTE 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ E L R +SE Sbjct: 395 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWEKLIRKLSE 442 >gi|317050200|ref|YP_004111316.1| chromosomal replication initiator protein DnaA [Desulfurispirillum indicum S5] gi|316945284|gb|ADU64760.1| chromosomal replication initiator protein DnaA [Desulfurispirillum indicum S5] Length = 460 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 144/471 (30%), Positives = 236/471 (50%), Gaps = 17/471 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + V L Q+ + +W + + FH + V L VP+ F+K ++ RYLET Sbjct: 1 MTTNEFWENVLGLLSTQISEQNFYTWIEPMHFHDKSDDTVTLHVPSRFMKDIVEERYLET 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEK-TASSPSITKLSPINTNISKSPIILGKQTIS 151 + ++ + V ILV EK A P+ + S T S + K+ + Sbjct: 61 LRGAIEKLEKKAYRVNILVEQQVDKIPEKEPAHEPAALETSVAQTTPSPTQQ---KEKLH 117 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L R++F +F+ GSSN+ A + V NPLFI+ VGLGKTH Sbjct: 118 SDVRHILSPRYIFDSFVVGSSNQF-----AHAAAMAVANGPGVTYNPLFIYGGVGLGKTH 172 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QA+ NA + + +++Y+ +E F +A+++ + R +D+LLIDD+QF+ Sbjct: 173 LMQAVGNAIYQDNRSAKIMYVQSEVFTNEMINALKNGKIEEFRQRYRYVDVLLIDDIQFI 232 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L KQ+V ++D+ P E+ L+ R+RSR + G+ + D E Sbjct: 233 AGKDRTQEEFFHTFNTLHGEKKQIVLSSDKFPREIPHLEERLRSRFEWGLIADIQPPDLE 292 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-T 389 + +IL+ + E + + EV + +A+ + + REL+G N++ + T Sbjct: 293 TKMAILRK-----KAESIDMYLPNEVALFIAKAIKHNIRELEGCLNRISAYAHLTGVEPT 347 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +I +L ++ K + EDIQR V+ +N+ NDL S R + R +AMY Sbjct: 348 VDIIKNVLKDILKDS-DKVVNCEDIQRQVSLRFNLKTNDLKSKNRSSELTHARHIAMYFC 406 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IGR FG RDH+TV+HA++ VE D K E+E ++ I Sbjct: 407 RKLTNMSLPQIGREFGGRDHSTVVHAIKTVEAKSSNDDNFKVELESIENQI 457 >gi|260665210|ref|ZP_05866059.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii SJ-7A-US] gi|260560947|gb|EEX26922.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii SJ-7A-US] Length = 455 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 236/472 (50%), Gaps = 24/472 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNRYLE 91 + + + + +++ + Y +WF+ K S ++V K + + Sbjct: 3 DLQKFWDYFNKQMRQEYNEVAYNAWFKNTKPVSYNKETNELVIAVKNPIAKGYWEANLST 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + LP E P+ +P + Sbjct: 63 KLIQTAYAYGN----------FEVLPIFEVDGDEPTERFRAPQPPKKVPERSDSPIKDDF 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 113 VTKNLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAIGHQMLGERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I++ L ++A V+T+ REL+GA ++ + + Sbjct: 288 TRIAILRK-----KAESEGLVIDDATLDYIASQVSTNIRELEGALVKVQAHATIEKADIN 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A + L+ L +++ ++I IQ +VA ++ + N+L +RVR +V PRQ+AMYLS Sbjct: 343 VNLARDALTDLKLVQKSRGLQISKIQEVVANYFQTTVNELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IG+ FG +DHTTV+HA K+EK + TD +K V LK+L+ Sbjct: 403 RNLTDASLPKIGQEFGGKDHTTVMHAYEKIEKDIRTDAEIKSAVYELKQLLD 454 >gi|171462833|ref|YP_001796946.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192371|gb|ACB43332.1| chromosomal replication initiator protein DnaA [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 474 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 240/471 (50%), Gaps = 22/471 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITK 95 + L ++ P + +W Q L S + + + P F WIK + + + Sbjct: 18 FWDDAVGILSRELSPQQFKTWIQPLILLSFVESDDSLTIGAPNRFKLDWIKKTFADRFQE 77 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS--PIILGKQTISPV 153 L + R V + A P+ +P+ T P + + ++ P+I + + + Sbjct: 78 LATQYFGRPINVGFTLALEANPN----NLAPNTTIQEPPQSVVIEALEPVISVEDSSFEI 133 Query: 154 FG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F TF+ G +N++A A+ +A Y NP+F++ VGLGKTHL Sbjct: 134 EDHSKLNPNLTFETFVTGKANQLARAASIQVAHNPGTSY-----NPMFLYGGVGLGKTHL 188 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI N +K +PN R+ Y+ AE ++ A + K ++DLLLIDD+QF Sbjct: 189 IHAIGNHLLKEKPNARIRYIHAEQYVSDVVRAYQQKAFDRFKRYYHSLDLLLIDDIQFFS 248 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF + +LL + QV+ D P E+ +D R+ SR G++V + + EM Sbjct: 249 GKSRTQEEFFYAFEALLSNKSQVIITGDTYPKEMAGIDDRLISRFDSGLTVAIEPPELEM 308 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + + ++E+V VA+ + ++ REL+GA +++ F +T Sbjct: 309 RVAIL-----MKKAIGEGIPMSEDVAFFVAKHLRSNVRELEGALRKILAFVRFHGREVTI 363 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A L L++ +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AM+++K Sbjct: 364 EVARTALKDLLSIQ-NRQISVENIQKAVADFYSIKVADMYSKKRPANIARPRQIAMFMAK 422 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHAVRK+ D L E+ ++++ + Sbjct: 423 ELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSHDSQLNHEIHVIEQTLK 473 >gi|42519921|ref|NP_965836.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Drosophila melanogaster] gi|225629873|ref|YP_002726664.1| chromosomal replication initiator protein DnaA [Wolbachia sp. wRi] gi|61212648|sp|Q73IZ0|DNAA_WOLPM RecName: Full=Chromosomal replication initiator protein DnaA gi|42409658|gb|AAS13770.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila melanogaster] gi|67810247|gb|AAY81988.1| chromosomal replication initiator protein [Wolbachia pipientis] gi|225591854|gb|ACN94873.1| chromosomal replication initiator protein DnaA [Wolbachia sp. wRi] Length = 460 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 170/464 (36%), Positives = 265/464 (57%), Gaps = 34/464 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + + L N G Y SW LKF S + V LSV T F+K WI Y++ I L+Q Sbjct: 26 WEKIQNCLYNLYGEATYNSWLSSLKFVSSRNGEVLLSVSTRFIKEWITVHYMKKILSLWQ 85 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E I+ ++I V N + + I+ ++ + GSPL Sbjct: 86 SEDKSIRSIDIQVIE---------------------ERNSNFNVILKNREESNHNLGSPL 124 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F F+ G N +A TAA+ +AE + NPLF++ VGLGKTHL+ AIA Sbjct: 125 DPRFTFDNFVVGKPNELAFTAAKRVAESIDP---ILGSNPLFLYGGVGLGKTHLMHAIAW 181 Query: 219 ASIKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 + P+ + VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Sbjct: 182 HIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDS 240 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R I Sbjct: 241 TQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGI 300 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E Sbjct: 301 LQ-----AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASE 355 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T + Sbjct: 356 TLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQK 414 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 S P+IGR FG RDH TV+HAV++VE ++TD E+ LK++ Sbjct: 415 SLPDIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEINRLKKM 458 >gi|317969547|ref|ZP_07970937.1| chromosomal replication initiation protein [Synechococcus sp. CB0205] Length = 468 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 135/468 (28%), Positives = 233/468 (49%), Gaps = 16/468 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ V L+ + + +W + + N + L P F W++ YL TI Sbjct: 7 ETLWRQVQEALQGNLSKPTFETWIRPATCVDLQGNELQLLAPNTFACGWLRKNYLSTIAA 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + E R V + + + P+ + + + + Sbjct: 67 VASEIAGRPIAVSVEAGGESAQGITLNGQPPTTAGVEVAPGSAAPQQRTATGEAPR-KLA 125 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGKTHL+QA Sbjct: 126 PGLNPRYVFNRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLGKTHLMQA 180 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + ++ P RV Y++ E F AIR + +D R DL+L+DD+QF++GK Sbjct: 181 IGHYRLEIDPEARVAYVSTETFTNDLIQAIRKDGMQKFRDRYRAADLILVDDIQFIEGKE 240 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D E R + Sbjct: 241 YTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQTPDLETRMA 300 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL + E ++++ +++ ++A T++ REL+GA + V FA I + Sbjct: 301 ILHK-----KAEHERVSLPRDLIQYLAGRFTSNIRELEGALTRAVA---FASITGLPMTV 352 Query: 395 ELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E ++ ++ G ++ + + VA+ + + +++ S R R V + RQV MYL + T Sbjct: 353 ESVAPMLEPAGVEVEVTPDQVLNKVAEVFGVGVDEMKSASRKRAVSQARQVGMYLMRQGT 412 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG +DH+TV++AV + EK LE D L ++++ ++ L+ Sbjct: 413 NLSLPRIGDAFGGKDHSTVMYAVDQTEKKLEADPQLGRQIQQVRDLLQ 460 >gi|329576316|gb|EGG57831.1| replication initiator protein DnaA [Enterococcus faecalis TX1467] Length = 447 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 138/470 (29%), Positives = 246/470 (52%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ES + + + + + +W + + + +N + L VP+ + + + I Sbjct: 3 DVESFWHSLEEAYQAILSAPSFDAWIKTTRPLKLDNNQLWLEVPSAVHRDYWEKNLSAKI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E ++ G E++ V + L+ ++ ++ +Q+ + Sbjct: 63 V----ETGFKLTGAEVMPHFVV--------ADEKDAALAQELEEPAEEEVVFSEQSKKAM 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ Sbjct: 111 ----LNPKYTFDTFVIGKGNQMAHAAALVVAEDPGSIY-----NPLFFYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + QP+ +V Y+++E F F ++I+ + + RN+DLLL+DD+QFL Sbjct: 162 HAIGHQMLVNQPDAKVKYVSSETFTNEFINSIQTKTSEQFRKEYRNVDLLLVDDIQFLAE 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K EF N L + KQ+V +DRPP+++ L R+ SR G+SV + D E R Sbjct: 222 KEATLEEFFRTFNDLYNENKQIVLTSDRPPNDIPKLPERLVSRFAWGLSVDITPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ + + +L I ++ L ++A + ++ REL+GA ++ + +T Sbjct: 282 IAILRK-----KADAERLEIPDDTLSYIAGQIDSNIRELEGALVRVQAFATINGEDITTS 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + G ++ I IQ V+K+Y++ DL +RV+T+V PRQ++MYL++ Sbjct: 337 LAADALKSLKSVGSKNQLSILQIQEEVSKYYHVPLKDLKGKKRVKTIVVPRQISMYLARE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG FG +DHTTV+HA K++++LE + ++KEV +K L++ Sbjct: 397 MTDNSLPKIGAEFGGKDHTTVIHAHEKIQQLLERNPAIQKEVSEIKNLLN 446 >gi|89891636|ref|ZP_01203140.1| chromosomal DNA replication initiator DnaA [Flavobacteria bacterium BBFL7] gi|89516183|gb|EAS18846.1| chromosomal DNA replication initiator DnaA [Flavobacteria bacterium BBFL7] Length = 475 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 135/484 (27%), Positives = 241/484 (49%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + S++ +K+ + P Y +WF+ +K + + + VP+ F W++ Y+ Sbjct: 1 MASTAASVWENCLLFIKDNINPQAYKTWFEPIKPVKLTETALSIQVPSRFFYEWLEEHYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + E + ++ L +E + S ++ +P+ Sbjct: 61 KLLKTALTRELGEGAKLIYAIKMENTLKGMEPFTEKIPSSNRSIQSSQSVDAPVRSKSPE 120 Query: 150 ISPVF----------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + F S L+ + F +F+EG SNR+A +A ++A NPL Sbjct: 121 LKNPFIIPGIRNVKIESQLNPSYNFDSFLEGDSNRLARSAGMAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P+ +Y++AE F ++ ++R N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVGIKENYPDKTALYISAEKFTQQYIESVRKNNRNDFIHFYQI 236 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D+L++DD+QF GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 VDVLIVDDIQFFAGKASTQDVFFHIFNHLHQNGKQVILTSDKKPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L DYE R SI+KN+L E ++++++ ++A + T+ REL+GA L Sbjct: 297 GLSAELNHPDYETRVSIIKNKLYRDGVE-----MDDDIIHYLADNIKTNIRELEGAIISL 351 Query: 379 VFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + SF +T ++A +++ + V +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAHSSFNRKDITIDLARKIVENYVKN-TKREISIDQIQQVVSDYFQMDVETLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AMY SK MT S IG + G RDH TVLHA + V+ + TD K VE L Sbjct: 411 IVQARQLAMYFSKKMTKASLASIGSQIGKRDHATVLHACKTVDNLASTDKQFNKYVEDLS 470 Query: 498 RLIS 501 + ++ Sbjct: 471 KKLT 474 >gi|302870732|ref|YP_003839368.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor obsidiansis OB47] gi|302573591|gb|ADL41382.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor obsidiansis OB47] Length = 454 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 148/480 (30%), Positives = 249/480 (51%), Gaps = 39/480 (8%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPD----VYASWFQRLKFHSVLHN-IVHLSVPTNFLKAW 84 ++ + ++ V +K ++ P Y +WF+ L N + L +F + Sbjct: 1 MVDYDVNEVWEKVKEAVKKEINPSPTDISYNTWFESLVPLCFDDNDTLILKAFADFHRDI 60 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + NRY I ++ S +++++ + + Sbjct: 61 VINRYSIVILNALRQLFSPHLSIKVILPEEVEKYKK----------------------FL 98 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 KQ + L+ ++ F TF+ G++NR+A AA ++AE NPLFI+ Sbjct: 99 KSKQDEKLEIVTQLNPKYTFETFVVGNNNRLAHAAALAVAETP---PGERTYNPLFIYGG 155 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI + +K P +V+Y+T+E F +AIRD + RN+D+LL Sbjct: 156 VGLGKTHLMHAIGHHVLKLYPGTKVMYVTSEIFTNELIAAIRDEKTDEFRLKYRNVDVLL 215 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ Sbjct: 216 IDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITD 275 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +IL + + + + +L +A + T+ REL+GA N+++ Sbjct: 276 IQPPDFETRIAILSKKCQLEGT-----PVPQHILEFIASKIETNIRELEGALNKILAYSK 330 Query: 384 FA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +T E+A++ L ++T K++ IEDIQ VA ++NI D S+RR R V Sbjct: 331 LMAPDKEITLELAEKALKEFIDTNTKKELTIEDIQAEVASYFNIRLEDFKSSRRSRNVAF 390 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ D + VE +K+ + Sbjct: 391 PRQIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINKDTNTRNAVENIKKRL 450 >gi|119485656|ref|ZP_01619931.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106] gi|119456981|gb|EAW38108.1| chromosomal replication initiation protein [Lyngbya sp. PCC 8106] Length = 452 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 142/476 (29%), Positives = 250/476 (52%), Gaps = 35/476 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ ES++ V RL+ Q+G + +W + + ++ + + P F + W++ Y Sbjct: 1 MEISLESLWHQVLDRLQVQLGGPTFDTWIKTASAERLENHCLVIRTPNPFARNWLQKHYK 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS---PSITKLSPINTNISKSPIILGK 147 E I + Q+ VEI V + ++++ S PS +P N + Sbjct: 61 EIIAEAAQDILG--YPVEIYVTTETQMTLDQAKSQRVWPSTVTETPSNQRLKPP------ 112 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 L+S++VFS F+ G+++R+A AA ++AE NPLF+ VGL Sbjct: 113 ---------NLNSKYVFSRFVVGANSRLAHAAALAVAESPGR-----EFNPLFLCGGVGL 158 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI + I+ P+ +V Y++ E F +AIR + + +D R D+LL+DD Sbjct: 159 GKTHLMQAIGHYRIEINPDAKVFYVSTEKFTNDLIAAIRKDSMQSFRDHYRAADVLLVDD 218 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK Q EF H N+L ++ KQVV A+DRPP+++ L R+ SR G+ + Sbjct: 219 IQFIEGKEYTQEEFFHTFNTLHEAGKQVVLASDRPPNQIPRLQERLCSRFSMGLVADIQP 278 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ + E + ++E V+ ++A T++ REL+GA + V + Sbjct: 279 PDLETRMAILQK-----KAEYENVRLSEGVVEYIASRYTSNIRELEGALIRAVA---YTS 330 Query: 387 ILTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 I + E ++ +++ + ++ E + ++VA+ + +S DL R R + RQV+ Sbjct: 331 ISGLPMTVESIAPVLSPAEQPQESSPEAVIQIVAETFKVSVEDLKGTSRRREISLARQVS 390 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + T S P+IG FG +DHTTV+++ K+ ++ D+ L + + L I+ Sbjct: 391 MYLMRQHTDLSLPKIGELFGGKDHTTVMYSCEKITQLRNKDLELAQTLRQLSDQIN 446 >gi|238650715|ref|YP_002916568.1| chromosomal replication initiation protein [Rickettsia peacockii str. Rustic] gi|259645260|sp|C4K1R9|DNAA_RICPU RecName: Full=Chromosomal replication initiator protein DnaA gi|238624813|gb|ACR47519.1| chromosomal replication initiation protein [Rickettsia peacockii str. Rustic] Length = 463 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 287/470 (61%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVTELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD+RF F F+ G+ N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDARFTFDNFVVGAPNELAYAAARAVAESSG---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKILQ 462 >gi|260437689|ref|ZP_05791505.1| DNA replication initiator protein, ATPase [Butyrivibrio crossotus DSM 2876] gi|292809915|gb|EFF69120.1| DNA replication initiator protein, ATPase [Butyrivibrio crossotus DSM 2876] Length = 450 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 244/474 (51%), Gaps = 37/474 (7%) Query: 35 CESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + +K +G + +W L+ +S+ V + VP + IKN Y Sbjct: 5 LKEKWEEIINTIKISYDMGDLPFKTWILPLQPYSIDDYTVTIFVPDPRVVNHIKNNYTNH 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 V + S+P + P+ +S L Sbjct: 65 FITTISNFFDHSYDVRFI-------------STPDLANPQPVVKEPVESLNSL------- 104 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + + L+ ++ F TF+ G +N A A+ ++AE Y NPLF++ VGLGKTHL Sbjct: 105 IIKAGLNPKYTFETFVVGDNNNFAHAASLAVAESPGDTY-----NPLFLYGGVGLGKTHL 159 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASA---IRDNCALNLKDSLRNIDLLLIDDMQ 269 +QAI N IK+ P+L+V+Y+T+E F + ++ N ++ RN+D+LLIDD+Q Sbjct: 160 MQAIGNYIIKQNPSLKVMYVTSEIFTNELIESIKTEKNTSNKNFREKYRNVDVLLIDDIQ 219 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L ++ KQV+ ++DRPP + E+L+ R++SR G+ V + + Sbjct: 220 FIIGKESTQDEFFHTFNTLREAKKQVIISSDRPPKDFETLEDRLKSRFTNGLLVDISPPN 279 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 YE R +IL + E NI+ +VL ++A + ++ REL+G+ +LV F Sbjct: 280 YETRMAILHK-----KGEIEGYNIDMDVLEYIATNIKSNIRELEGSLTKLVAFSKFSKKP 334 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+E+L ++ +++ E I + VA+HY IS DL+S +R + + PRQ+AMY Sbjct: 335 INVSLAEEVLRDFISPNAHREVTPELIIQTVAEHYQISVEDLISKKRDQKIAWPRQIAMY 394 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + +T +IG GDRDHTTV H KV + L D + +E++K+ I+ Sbjct: 395 LCRSLTDIPLTKIGSYLGDRDHTTVSHGCDKVAETLAKDASFANTLEIIKKKIN 448 >gi|186474774|ref|YP_001856244.1| chromosomal replication initiation protein [Burkholderia phymatum STM815] gi|226735789|sp|B2JJ97|DNAA_BURP8 RecName: Full=Chromosomal replication initiator protein DnaA gi|184191233|gb|ACC69198.1| chromosomal replication initiator protein DnaA [Burkholderia phymatum STM815] Length = 518 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 148/527 (28%), Positives = 244/527 (46%), Gaps = 72/527 (13%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NEFWQHCSALLERELTPQQYVTWIKPLAPVAFDADANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASS---------------------------- 125 T L ++ V+ ++ A A S Sbjct: 62 TDLARDFWHSPVDVQFVLDPKAGMRTAPAAPSRPPSAGVRNAAAAVDAAVGAVQAAHSAR 121 Query: 126 -------------------------PSITKLSPINTNISKSPIILGK----QTISPVFGS 156 PS+ + P + ++ S S Sbjct: 122 GGGMPGLGMPTNAAQLTDDAADLDLPSLDANEAAAARRTWRPGAAAQAAGGESDSTYERS 181 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKTHL+ AI Sbjct: 182 KLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAI 236 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 237 GNQLLMDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSR 296 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR +I Sbjct: 297 TQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAI 356 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + + +N+NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 357 L-----MRKAQSEGVNLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTK 411 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ T + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T Sbjct: 412 EALKDLL-TVQNRQISVENIQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELTQ 470 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 471 KSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTLK 517 >gi|225677165|ref|ZP_03788163.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225590789|gb|EEH12018.1| chromosomal replication initiation protein [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 460 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 170/464 (36%), Positives = 264/464 (56%), Gaps = 34/464 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + + L N G Y SW LKF S + V LSV T F+K WI Y++ I L+Q Sbjct: 26 WEKIQNCLYNLYGEATYNSWLSSLKFVSSRNGEVLLSVSTRFIKEWITVHYMKKILSLWQ 85 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E I+ ++I V N + + I+ ++ + GSPL Sbjct: 86 SEDKSIRSIDIQVIE---------------------ERNSNFNVILKNREESNHNLGSPL 124 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F F+ G N +A TAA+ +AE + NPLF++ VGLGKTHL+ AIA Sbjct: 125 DPRFTFDNFVVGKPNELAFTAAKRVAESIDP---ILGSNPLFLYGGVGLGKTHLMHAIAW 181 Query: 219 ASIKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 + P+ + VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Sbjct: 182 HIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDS 240 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R I Sbjct: 241 TQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGI 300 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E Sbjct: 301 LQ-----AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASE 355 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T + Sbjct: 356 TLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQK 414 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 S P+IGR FG RDH TV+HAV++VE ++TD E+ LK+ Sbjct: 415 SLPDIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEINRLKKT 458 >gi|78187985|ref|YP_378323.1| chromosomal replication initiation protein [Chlorobium chlorochromatii CaD3] gi|78170184|gb|ABB27280.1| chromosomal replication initiator protein, DnaA [Chlorobium chlorochromatii CaD3] Length = 492 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 129/481 (26%), Positives = 248/481 (51%), Gaps = 21/481 (4%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 + +E + ++ + +K + P + +WF ++ + + + VP+ F WI+ Sbjct: 20 QSSME---QQVWDTCLAVIKESINPLAFKTWFLPIRPLGFVGGELTIEVPSQFFYEWIEE 76 Query: 88 RYLETITKLFQEEHSRIQGVEILV---RSVALP---SVEKTASSPSITKLSPINTNISKS 141 Y + + ++ + + +S P + + +SP + +P+ + + Sbjct: 77 NYSLLLKQTLRDVIGSEARLMYSIVMDKSQGQPVTIELPQQTTSPFTYEQAPLKVDRIEE 136 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + F S L+++++F T I G N +A AA+++++ NPL I Sbjct: 137 QRHESYERNVSRFESHLNTKYIFDTLIRGDCNSLAFAAAKAVSQNPGQN----AFNPLVI 192 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTH++QA+ N+ + + RV+Y+++E F F +AI++ R+ID Sbjct: 193 YGGVGLGKTHMMQAVGNSVRENRLTDRVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRSID 252 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L+IDD+QF GK Q E H+ N+L S KQ++ +ADRP +++ ++ R+ SR G+ Sbjct: 253 VLIIDDIQFFSGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGL 312 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S + DYE R +I+ +S+ + + +++ V+ +A VT + REL+G +L+ Sbjct: 313 SADIQPPDYETRKAII-----LSKLQHNGVTLDDAVIEFIATNVTENVRELEGCIVKLLA 367 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 S + L ++ TK++ ++ I++ V+ +++I+ NDL + + + Sbjct: 368 AQSLDNRDIDLAFTKSTLKDIIR-HTTKQLTLDTIEKGVSSYFSITSNDLKGKSKKKEIA 426 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RQ+AMYL+K++T S IG FG RDH+TV+HAV + K +E +K +E +K+ Sbjct: 427 VGRQIAMYLAKMLTDSSLKTIGLHFGGRDHSTVIHAVSTISKRVEQISEERKRIEEIKKR 486 Query: 500 I 500 I Sbjct: 487 I 487 >gi|238855506|ref|ZP_04645811.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 269-3] gi|282931532|ref|ZP_06337031.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] gi|238831872|gb|EEQ24204.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 269-3] gi|281304339|gb|EFA96442.1| chromosomal replication initiator protein DnaA [Lactobacillus jensenii 208-1] Length = 455 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 237/472 (50%), Gaps = 24/472 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNRYLE 91 + + + + +++++ Y +WF+ K S ++V K + + Sbjct: 3 DLQKFWDYFNKQMRHEYNEVAYNAWFKNTKPVSYNKETNELVIAVKNPIAKGYWEANLST 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + LP E P+ +P + Sbjct: 63 KLIQTAYAYGN----------FEVLPIFEVDGDEPTERFRAPQPPKKVPERSDSPIKDDF 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 113 VTKNLQLNEKYTFDTFVQGEGNKLAEGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAIGHQMLGERPNAKVVYIQSETFVNDFINSIKNKTQDEFREKYRTADLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I++ L ++A V+T+ REL+GA ++ + + Sbjct: 288 TRIAILRK-----KAESEGLVIDDATLDYIASQVSTNIRELEGALVKVQAHATIEKADIN 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A + L+ L +++ ++I IQ +VA ++ + N+L +RVR +V PRQ+AMYLS Sbjct: 343 VNLARDALTDLKLVQKSRGLQISKIQEVVANYFQTTVNELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IG+ FG +DHTTV+HA K+EK + TD +K V LK+L+ Sbjct: 403 RNLTDASLPKIGQEFGGKDHTTVMHAYEKIEKDIRTDAEIKSAVYELKQLLD 454 >gi|190570479|ref|YP_001974837.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190356751|emb|CAQ54110.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 460 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 169/464 (36%), Positives = 266/464 (57%), Gaps = 34/464 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + + L N G Y SW L+F S + V LSVPT F+K WI Y+E I L+Q Sbjct: 26 WEKIQNYLHNLYGEATYNSWLSSLRFISNRNGEVLLSVPTRFIKEWITVHYMEKILSLWQ 85 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E + ++I + N + + I+ ++ + GSPL Sbjct: 86 SEDQSVCSIDIQLIE---------------------ERNSNSNTILKNREENNHNLGSPL 124 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+RF F F+ G SN +A TAA+ +AE + NPLF++ VGLGKTHL+ AIA Sbjct: 125 DTRFTFDNFVVGKSNELAFTAAKRVAESIDPISGS---NPLFLYGGVGLGKTHLMHAIAW 181 Query: 219 ASIKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 + P+ + VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Sbjct: 182 DIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDS 240 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R I Sbjct: 241 TQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGI 300 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E Sbjct: 301 LQ-----AKVERMNMYVPKDVLEFLARNIKSNIRELEGALNKVAHTSLIGRSMTVESASE 355 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + + + IE+IQ+ +A+ +NI D+ SNRR+R++ RPRQ+AMY +K T + Sbjct: 356 TLIDLLRSNH-RSITIEEIQKKIAEFFNIKIADMQSNRRLRSLARPRQIAMYFAKKFTQK 414 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 S P+IGR FG RDH TV+HAV++VE + TD E+ LK++ Sbjct: 415 SLPDIGRNFGGRDHATVIHAVKQVENFIRTDPKFADEINRLKKM 458 >gi|119947308|ref|YP_944988.1| chromosomal replication initiator protein DnaA [Psychromonas ingrahamii 37] gi|166214694|sp|A1T0X4|DNAA_PSYIN RecName: Full=Chromosomal replication initiator protein DnaA gi|119865912|gb|ABM05389.1| chromosomal replication initiator protein DnaA [Psychromonas ingrahamii 37] Length = 458 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 157/471 (33%), Positives = 257/471 (54%), Gaps = 23/471 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +I+ ++LK+++ +++W + L+ H+ + L P + W++N+Y+ TI Sbjct: 4 AIWQECLAQLKDELSAGDFSTWLRPLQA-DFNHSTLSLYSPNKYTSEWVRNKYMATIEDK 62 Query: 97 FQE---EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 Q+ + + V+I + + SVEK K P ++ P + Sbjct: 63 VQQLVNQENPNHSVKIRLMVGNVSSVEKKP-----AKQIPTQAPLTNQPWEGESKAHRVP 117 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L ++ F F+EG SN A+ Q IAE Y NPLF++A GLGKTHLL Sbjct: 118 HKSNLIKKYTFDNFVEGKSNNFAIATTQQIAENPGDVY-----NPLFLYAHPGLGKTHLL 172 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ NA + P +VVY+ +E F+ ++IR+N K+ ++D LLIDD+ F G Sbjct: 173 HAVGNAILAENPESKVVYIRSERFVQDMINSIRNNTIEQFKEYYASLDALLIDDIHFFAG 232 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q NS+LD+ +QV+ +DR P E+E +D R+R+R G+S+P+ + E R Sbjct: 233 KDRSQEVLFQTFNSMLDAHQQVILTSDRFPKEIEGIDERLRTRFGWGLSIPIDPPELETR 292 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVT-TSGRELDGAFNQLVFRHSF-APILTA 390 +IL I++ E+ L + ++V +A+ +T T R L+GA + + F +T Sbjct: 293 VAIL-----ITKAEERGLKLPDDVAFFIAKRLTITDVRVLEGAIANISAKAQFTGQGITI 347 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + L ++ TK+ I++IQ++VA+HY I +D+ S RR RTV RPRQ+AM L+K Sbjct: 348 SLVQDALRDMLAV-HTKQTTIDNIQKIVAQHYRIKISDMSSKRRTRTVARPRQIAMALAK 406 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RKV+++ + ++++ ++L R +S Sbjct: 407 ELTQHSLPEIGEAFGGRDHTTVLHACRKVQELRRENNDIQEDYKILIRTLS 457 >gi|259047905|ref|ZP_05738306.1| DNA replication initiator protein, ATPase [Granulicatella adiacens ATCC 49175] gi|259035439|gb|EEW36694.1| DNA replication initiator protein, ATPase [Granulicatella adiacens ATCC 49175] Length = 456 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 146/473 (30%), Positives = 245/473 (51%), Gaps = 23/473 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + + I+ + + + W + + + NI+++ VP+ + ++ L I Sbjct: 3 SIQDFWDILLEQFEKTNSEFTFNHWIKPAEPVRIEKNILYIKVPSQTFARYWQDNLLRDI 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + + + ++ P+I+ N+NI ++ Sbjct: 63 IEFGYDYFRQSFEPRFI--------TPESDFEPTISSFQSNNSNIEETQTTGLSHPSPTA 114 Query: 154 F--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 S L+ ++ F TFI G N++A AA+ +AE Y NPLF + VGLGKTH Sbjct: 115 IEEDSHLNPKYTFDTFIIGKGNQMATAAARYVAENPGTAY-----NPLFFYGGVGLGKTH 169 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI N K P RV Y+T+E FM ++I ++ RN+D+LL+DD+QFL Sbjct: 170 LMQAIGNDYKKNHPTARVKYVTSEEFMNEMIASIGSKTPQEFRNRYRNVDILLVDDIQFL 229 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H N+L ++ KQ+V +DR P+E+++L R+ SR G+ V + D E Sbjct: 230 AAKEATQEEFFHTFNALFNNQKQIVLTSDRQPTEIKALQERLVSRFVSGLPVDITPPDLE 289 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL+N + + NI +VL +VA + ++ REL+GA +L ++ Sbjct: 290 TRIAILQN-----KAQSLGFNIPIDVLSYVAGHIQSNVRELEGALMRLQAYSVMVGEDIS 344 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L +L+ G+ K + I DIQ VAK+YNI+ D+ +R +T+V+PRQ+AMYLS Sbjct: 345 TDLAAEALKNLLPGGKEKLLSIHDIQSAVAKYYNITVEDIKGKKRTKTMVQPRQIAMYLS 404 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S +IG FG RDH+TVLHA K+ ++ + + + +K L+ + Sbjct: 405 RELTGSSLQKIGSDFG-RDHSTVLHAYEKISLEVKENTETTQVINEIKGLLHQ 456 >gi|331086957|ref|ZP_08336033.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409618|gb|EGG89057.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 456 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 140/476 (29%), Positives = 244/476 (51%), Gaps = 36/476 (7%) Query: 36 ESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E + + +LK + + + +W L+ + V N V++ V +IKN+YL Sbjct: 5 EENWEEIIQKLKIEHSLTDVSFKTWILPLRVYKVTSNTVYILVNLKASIDYIKNKYLLP- 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 FQ + + G E V+ +A + K ++ Sbjct: 64 ---FQVCIAEVVGKEYEVKFIAENEFDPKDFEDKTA---------------TPKSKVTVS 105 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F TF+ G +N A A+ ++AE Y NPLF++ VGLGKTHL+ Sbjct: 106 QAANLNPKYTFDTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLM 160 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC------ALNLKDSLRNIDLLLIDD 267 +IA+ ++ +P +V+Y+T+E F AI++ ++ R+ID+LLIDD Sbjct: 161 HSIAHFILENEPEKKVLYVTSETFTNELIEAIKNGKTGNESAMTAFREKYRSIDVLLIDD 220 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+RSR + G+ + Sbjct: 221 IQFIIGKESTQEEFFHTFNHLHISGKQIIISSDKPPKDIETLEARLRSRFECGLVADISS 280 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYE R +IL+ + + + K NI + V+ ++A V ++ REL+G+ N+L+ + Sbjct: 281 PDYETRMAILRKKEELDGLD--KYNIPDAVMQYIASNVKSNIRELEGSLNKLIALYKLKN 338 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A E L +V+ E +++ E I +V++H+NIS DL S +R + PRQ+ Sbjct: 339 APIDINLAAEALKDIVSPNENRQVTPELILDVVSEHFNISIADLKSGKRNAEIAIPRQIV 398 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + MT IG G RDH+T+ H V KV ++ T ++++K+ ++ Sbjct: 399 MYLCRTMTDTPLKAIGLTLGGRDHSTISHGVDKVTADIKASDTFSNTIDIIKKKLN 454 >gi|153815423|ref|ZP_01968091.1| hypothetical protein RUMTOR_01658 [Ruminococcus torques ATCC 27756] gi|317500885|ref|ZP_07959097.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 8_1_57FAA] gi|331089213|ref|ZP_08338115.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 3_1_46FAA] gi|145847282|gb|EDK24200.1| hypothetical protein RUMTOR_01658 [Ruminococcus torques ATCC 27756] gi|316897765|gb|EFV19824.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 8_1_57FAA] gi|330405765|gb|EGG85294.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 3_1_46FAA] Length = 456 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 137/476 (28%), Positives = 244/476 (51%), Gaps = 36/476 (7%) Query: 36 ESIFTIVSSRLKNQV--GPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E + ++ +++K + Y +W L + V N V++ V I+ +YL Sbjct: 5 EQNWDLILNKMKLEYCSSNISYTTWIAPLTVYEVKDNTVYILVQLRASLEHIEEKYLLP- 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F+ + + G+E V V +I K + +N K+ Sbjct: 64 ---FKVCIAEVTGIEFEVAFVTDNEAVIQEKKENIIKKNRVNAIYEKA------------ 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS+N A A+ ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 109 ---NLNPKYTFDTFVVGSNNNFAHAASLAVAESPGEIY-----NPLFIYGGVGLGKTHLM 160 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC------ALNLKDSLRNIDLLLIDD 267 ++A+ + P+ +V+Y+T+E F A++ ++ RN D+LLIDD Sbjct: 161 HSVAHFILANDPSKKVLYVTSETFTNELIDALKAGKTGSELAMTKFREKYRNNDVLLIDD 220 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + Sbjct: 221 IQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISS 280 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 DYE R +IL+ + + E K +I ++V+ ++A + ++ REL+G+ N+L+ + Sbjct: 281 PDYETRMAILRKKEELDGLE--KYHIPDDVMQYIANNIKSNIRELEGSLNKLIALSNLEN 338 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A E L +++ +++ E I +V++H+NI ++L +R +V PRQ+ Sbjct: 339 KKIDIPLAAEALKDMISPDNNREVTPELIIDIVSEHFNIPISELKGKKRNAEIVLPRQII 398 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + +T IG G +DH +V H V+K+E L+TD L V ++K+ I+ Sbjct: 399 MYLCRTLTDTPLKAIGAILGGKDHASVNHGVKKIENELKTDEALNNTVNIIKKKIN 454 >gi|320161310|ref|YP_004174534.1| chromosomal replication initiator protein DnaA [Anaerolinea thermophila UNI-1] gi|319995163|dbj|BAJ63934.1| chromosomal replication initiator protein DnaA [Anaerolinea thermophila UNI-1] Length = 447 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 139/470 (29%), Positives = 243/470 (51%), Gaps = 33/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N + + +L+ ++ + +W + + SV + + VP + + W+++R T Sbjct: 1 MNPQQAWQATLGQLQMEMNKASFETWVKDAQLISVEGSDFIIGVPNAYARDWLESRLTAT 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + V+ +V ++ + P +Q Sbjct: 61 VQRILEGLMGATPAVKFIVWH-----------------RDEVDMPEEEVPEESHQQAFLR 103 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S ++SR+ F FI G+SNR+A A ++AE + Y NPLF++ VGLGKTHL Sbjct: 104 SGTSTINSRYTFDNFIVGASNRMAHAACMAVAESPAKAY-----NPLFLYGGVGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI NA+ R L+V+Y+++E F +AIR + ++ RN+D+LLIDD+QF+ Sbjct: 159 LHAIGNAAQSR--GLQVLYVSSEEFTNDLINAIRSHTTQAFRERYRNMDVLLIDDIQFIA 216 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L KQ+V ++DR P L +L+ R+RSR + G++V + D E Sbjct: 217 GKESTQEEFFHTFNTLHGQDKQIVISSDRSPKALVTLEERLRSRFEWGLTVDIQPPDLET 276 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+++ + KE + +L +AR V ++ REL+GA +++ + + L+ Sbjct: 277 RIAILRSKAERNNKE-----VPYPILESIARLVQSNIRELEGALTRVLAFSDLSGMPLSP 331 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++ L+ ++ + + +VA + IS ++L+ R R V PRQVAMYL + Sbjct: 332 QLVHTALADMLPNRT--HLDSSQVLEVVASEFGISLDELVGRSRSREVALPRQVAMYLMR 389 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG G RDHTTV++A KV M+E D L++++ ++ + Sbjct: 390 EEANASLPQIGEALGGRDHTTVMYACEKVADMIERDDRLRRKIFAIRERL 439 >gi|91785914|ref|YP_546866.1| chromosomal replication initiation protein [Polaromonas sp. JS666] gi|91695139|gb|ABE41968.1| chromosomal replication initiator protein DnaA [Polaromonas sp. JS666] Length = 464 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 145/470 (30%), Positives = 237/470 (50%), Gaps = 19/470 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETI 93 ++ L ++ + +W + L H + V + V F WI+ +Y I Sbjct: 10 SHDLWQNCVDHLAQELPEQQFNTWIRPLVVHVAADLSKVTIQVGNRFKLDWIRAQYAARI 69 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + L ++ +E+ AL E A S S+T+ + + + ++ Sbjct: 70 SALLEKISGHRISLEL-----ALAPREPAAKSASLTRSFEGVGVAEPAGLGVPEEAAGAP 124 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F + L+S F T IEG++NR+ AA ++ Y NPLFI+ VGLGKTHL+ Sbjct: 125 FKNRLNSALTFDTLIEGTANRMGRAAALHVSSSLGQLY-----NPLFIYGGVGLGKTHLM 179 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N + P +V+Y+ AE F+ A + K+ ++DLLLIDD+QF Sbjct: 180 HAIGNKLLADNPAAKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFAN 239 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + +LL +V +D P L + R+ SR G++V + + EMR Sbjct: 240 KDRTQEEFFNAFEALLTKKSHIVMTSDTYPKGLTDIHERLVSRFDSGLTVAIEPPELEMR 299 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL I + E + EEV VA+ V ++ REL+GA +++ F ++ + Sbjct: 300 VAIL-----IRKAEAEGTVMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNLKEISIQ 354 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K Sbjct: 355 LAREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKE 413 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 414 LTQKSLPEIGELFGGRDHTTVLHAVRKMSAERQQMTELNQQLHVLEQTLK 463 >gi|87302489|ref|ZP_01085306.1| chromosomal replication initiation protein [Synechococcus sp. WH 5701] gi|87282833|gb|EAQ74790.1| chromosomal replication initiation protein [Synechococcus sp. WH 5701] Length = 484 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 138/481 (28%), Positives = 242/481 (50%), Gaps = 30/481 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++ V L+ + + +W + + + L P +F W++ YL I Sbjct: 12 QELWHRVQEALQANLSKPTFETWIRPARCTGYADGQLQLEAPNSFASGWLRKNYLVMIAA 71 Query: 96 LFQEEHSRIQGVEILVRSV---------ALPSVEKTASSPSITKLSPIN----TNISKSP 142 + + VE+ +V + P+ A+ ++ SP T P Sbjct: 72 VATDLAGHAIQVEVGTAAVQELDGSLNGSTPAERPGAAQKTVAGASPGEVLRATAGPAGP 131 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 G+ P G L+ R+VF+ F+ G ++R+A AA ++AE NPLF+ Sbjct: 132 TASGETPRRPAPG--LNPRYVFNRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFLC 184 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+QAI + ++ P RV Y++ E F AIR + +D R DL Sbjct: 185 GGVGLGKTHLMQAIGHYRLEIDPEARVFYVSTETFTNDLIQAIRKDGMQKFRDRYRAADL 244 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 +L+DD+QF++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ Sbjct: 245 ILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLI 304 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + D E R +IL + E ++ + +++ ++A T++ REL+GA + V Sbjct: 305 ADIQAPDLETRMAILHK-----KAEQERMALPRDLIQYLAGRFTSNIRELEGALTRAVA- 358 Query: 382 HSFAPILTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 FA I + E ++ +++ + ++ + + VA+ + +S ++ S+ R R V + Sbjct: 359 --FASITGLPMTVESVAPMLDPVGNEVQVTPQQVVEKVAEVFGVSGEEMRSSSRKRAVSQ 416 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQV MYL + T S P IG FG +DH+TV++AV ++EK L D +L ++++ ++ L+ Sbjct: 417 ARQVGMYLLRQSTDLSLPRIGDVFGGKDHSTVMYAVEQIEKKLAIDPSLARQLQQVRDLL 476 Query: 501 S 501 Sbjct: 477 Q 477 >gi|33603963|ref|NP_891523.1| chromosomal replication initiation protein [Bordetella bronchiseptica RB50] gi|61212740|sp|Q7WDJ9|DNAA_BORBR RecName: Full=Chromosomal replication initiator protein DnaA gi|33568939|emb|CAE35353.1| chromosomal replication initiator protein [Bordetella bronchiseptica RB50] Length = 480 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 142/489 (29%), Positives = 229/489 (46%), Gaps = 34/489 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETI 93 + + SRL+ ++ P ++W + L + L V P F W++ + I Sbjct: 2 KEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDEAQAVLRVAAPNRFKLDWVRKNFSHQI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L E + R V + + A + P + +P Sbjct: 62 EALAAEWYQRPVQVTFELPGTSSAPRIPMAVPRPVAVSVPAVVAAVQQASEPAPPAPAPA 121 Query: 154 F------------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 S L++ F F+ G +N++A AA +AE Y Sbjct: 122 PAAPAPAPASADAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY---- 177 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLF++ VGLGKTHL+ AI NA + +RV Y+ A+ ++ A + + K Sbjct: 178 -NPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKR 236 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 ++DLLLIDD+QF GK Q EF + +++ KQ++ +D P EL +D R+ S Sbjct: 237 YYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLIS 296 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + + EMR +IL + + E + + EEV +A+ + ++ REL+GA Sbjct: 297 RFDSGLTVAIEPPELEMRVAIL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGA 351 Query: 375 FNQLVFRHSFAP--ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 +++ F +LT ++ E L L++ ++ +E+IQ+ VA Y I D+ S Sbjct: 352 LRKVLAYARFHGRDVLTVDVCKEALKDLLSVSNG-QITVENIQKTVADFYKIKVADMYSK 410 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR + PRQVAMYL+K +T +S PEIG FG RDHTTVLHAVRK+ L Sbjct: 411 RRPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQAELNHT 470 Query: 493 VELLKRLIS 501 + +L++ + Sbjct: 471 LHVLEQTLK 479 >gi|56798246|dbj|BAD82889.1| DnaA [Burkholderia multivorans] Length = 524 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 142/533 (26%), Positives = 245/533 (45%), Gaps = 78/533 (14%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDASANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA------------------------------LPSVEKTA 123 L ++ + V+ ++ A + Sbjct: 62 ADLARDFWNAPIEVQFVLDPKAGMRSPAARAAPAAPRAPLASGPAATVAAIAANLTANQS 121 Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFGSP-------------------------- 157 ++P+ P+ + + + + + P Sbjct: 122 ATPAAPADVPMTPSAAAAHHLNNDDADIDLPSLPAHEAAAGRRTWRPGPGAAPAAGGEAD 181 Query: 158 -------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKT Sbjct: 182 SMYERSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFLYGGVGLGKT 236 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF Sbjct: 237 HLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQF 296 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + Sbjct: 297 FSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPEL 356 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 EMR +IL + + + +N++E+V VA+ + ++ REL+GA +++ F + Sbjct: 357 EMRVAIL-----MRKAQSEGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREI 411 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E+ E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL Sbjct: 412 SIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYL 470 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 471 AKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 523 >gi|15892839|ref|NP_360553.1| chromosomal replication initiation protein [Rickettsia conorii str. Malish 7] gi|157828772|ref|YP_001495014.1| chromosomal replication initiation protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933500|ref|YP_001650289.1| chromosomal replication initiation protein [Rickettsia rickettsii str. Iowa] gi|20137861|sp|Q92H56|DNAA_RICCN RecName: Full=Chromosomal replication initiator protein DnaA gi|166214699|sp|A8GSY1|DNAA_RICRS RecName: Full=Chromosomal replication initiator protein DnaA gi|189044601|sp|B0BYF7|DNAA_RICRO RecName: Full=Chromosomal replication initiator protein DnaA gi|15620024|gb|AAL03454.1| chromosomal replication initiator protein DnaA [Rickettsia conorii str. Malish 7] gi|157801253|gb|ABV76506.1| chromosomal replication initiation protein [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908587|gb|ABY72883.1| chromosomal replication initiator protein [Rickettsia rickettsii str. Iowa] Length = 463 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 286/470 (60%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVTELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAESSG---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKILQ 462 >gi|291294405|ref|YP_003505803.1| chromosomal replication initiator protein DnaA [Meiothermus ruber DSM 1279] gi|290469364|gb|ADD26783.1| chromosomal replication initiator protein DnaA [Meiothermus ruber DSM 1279] Length = 439 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 145/470 (30%), Positives = 260/470 (55%), Gaps = 34/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ V ++ + Y +WF++++ V++ + L VPT+F K WI++ Y E Sbjct: 1 MTQNTVWQNVLEYVRQSITEVEYHTWFEKIQPLGVVNGSLELGVPTSFFKGWIEDHYAEL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +T+ ++ E+ V P+ +I + Q Sbjct: 61 LTEALARLGAQAPRFELKV-----------------IPGKPVQEDIFSASTPNKPQEA-- 101 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ +++F F+ G +N +A AA ++AE + Y NPLFI+ VGLGKTHL Sbjct: 102 --RARLNPKYIFENFVVGQNNNLAHAAAVAVAESPGNAY-----NPLFIYGGVGLGKTHL 154 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ ++ +R P+ ++ Y++ E F +AIR++ +D R++DLLL+DD+QF+ Sbjct: 155 MHAVGHSVAQRFPDKKIEYVSTETFTNELINAIREDRMSEFRDRYRSVDLLLVDDIQFIA 214 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DRPP ++ +L+ R+RSR + G+ + D E Sbjct: 215 GKERTQEEFFHTFNALYEARKQIILSSDRPPKDILTLEARLRSRFEWGLITDIQPPDLET 274 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK E + + EEVL ++AR +T++ REL+GA +++ S + L+ Sbjct: 275 RVAILK-----MNSEYRNMRVPEEVLEYIARQITSNIRELEGALMRVIAYASLNGVQLSK 329 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + LS + + E+I + VA+HYN+ ++ R + VV PRQ+AMYL + Sbjct: 330 AVAIKALSDVF-AATESGLAPEEILKAVAEHYNLRPEEIRGAGRRKEVVIPRQIAMYLIR 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MT S PEIG+ F RDHTTVL+A++K+++ L+T+ L++ ++ ++ + Sbjct: 389 EMTHASLPEIGQFFDGRDHTTVLYAIQKIQESLDTEPNLQQTLKSIRERL 438 >gi|161523181|ref|YP_001578193.1| chromosomal replication initiation protein [Burkholderia multivorans ATCC 17616] gi|189348958|ref|YP_001944586.1| chromosomal replication initiation protein [Burkholderia multivorans ATCC 17616] gi|221214574|ref|ZP_03587544.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD1] gi|226735788|sp|A9AI97|DNAA_BURM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|160340610|gb|ABX13696.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans ATCC 17616] gi|189332980|dbj|BAG42050.1| chromosomal replication initiator protein [Burkholderia multivorans ATCC 17616] gi|221165464|gb|EED97940.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD1] Length = 524 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 142/533 (26%), Positives = 245/533 (45%), Gaps = 78/533 (14%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDASANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA------------------------------LPSVEKTA 123 L ++ + V+ ++ A + Sbjct: 62 ADLARDFWNAPIEVQFVLDPKAGMRSPAAGAAPAAPRAPLASGPAATVAAIAANLTANQS 121 Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFGSP-------------------------- 157 ++P+ P+ + + + + + P Sbjct: 122 ATPAAPADVPMTPSAAAAHHLNNDDADIDLPSLPAHEAAAGRRTWRPGPGAAPAAGGEAD 181 Query: 158 -------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKT Sbjct: 182 SMYERSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFLYGGVGLGKT 236 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF Sbjct: 237 HLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQF 296 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + Sbjct: 297 FSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPEL 356 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 EMR +IL + + + +N++E+V VA+ + ++ REL+GA +++ F + Sbjct: 357 EMRVAIL-----MRKAQSEGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREI 411 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E+ E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL Sbjct: 412 SIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYL 470 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 471 AKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 523 >gi|319760739|ref|YP_004124676.1| chromosomal replication initiator protein dnaa [Alicycliphilus denitrificans BC] gi|317115300|gb|ADU97788.1| chromosomal replication initiator protein DnaA [Alicycliphilus denitrificans BC] Length = 473 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 142/473 (30%), Positives = 244/473 (51%), Gaps = 18/473 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYL 90 + + ++ + +L + + +W + L + V L V F WI+ +Y Sbjct: 15 DSAGQGLWQACTEQLAQDLPEQQFNTWIKPLVAQVSPDFSKVTLLVANRFKLDWIRAQYA 74 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I+ L +E + + +E+ + SV +T P + + ++ Sbjct: 75 GRISALLEELYGQPVTLELAL--AQRESVARTYVRPVPASI--EAPAANAPAGAAAEEPP 130 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + F + L+ F T +EG++NR+A +AA +A H Y NPLFI+ VGLGKT Sbjct: 131 AGAFRTRLNLALTFDTLVEGTANRMARSAAMHVAGSPGHLY-----NPLFIYGGVGLGKT 185 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ A+ N + +P+ +V+Y+ AE F+ + + + K+ ++DLLLIDD+QF Sbjct: 186 HLVHAVGNKLLADRPDAKVLYIHAEQFVSDVVKSYQRRTFDDFKERYHSLDLLLIDDVQF 245 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q EF + +LL +V +D P L ++ R+ SR G++V + + Sbjct: 246 FANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPEL 305 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 EMR +IL N+ E + EEV VA+ V ++ REL+GA +++ F + Sbjct: 306 EMRVAILINKARAEHAE-----MPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEV 360 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL Sbjct: 361 SIQLAREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYL 419 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 420 AKELTQKSLPEIGELFGGRDHTTVLHAVRKIGAERQQLTELNQQLHVLEQTLK 472 >gi|229586943|ref|YP_002845444.1| chromosomal replication initiation protein [Rickettsia africae ESF-5] gi|259645259|sp|C3PP41|DNAA_RICAE RecName: Full=Chromosomal replication initiator protein DnaA gi|228021993|gb|ACP53701.1| Chromosomal replication initiator protein DnaA [Rickettsia africae ESF-5] Length = 463 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 286/470 (60%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVTELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAESSG---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEIHLLMKILQ 462 >gi|117923319|ref|YP_863936.1| chromosomal replication initiator protein DnaA [Magnetococcus sp. MC-1] gi|166214679|sp|A0L3I7|DNAA_MAGSM RecName: Full=Chromosomal replication initiator protein DnaA gi|117607075|gb|ABK42530.1| chromosomal replication initiator protein DnaA [Magnetococcus sp. MC-1] Length = 447 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 153/470 (32%), Positives = 244/470 (51%), Gaps = 27/470 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH-SVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ + QV V+ +W + LK V + +F W+K RY + Sbjct: 2 QDFWSKAMDAVAEQVSVQVFEAWIRPLKAGGEVGDGQFQVYAANDFSADWVKKRYGGLLE 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ E+ + + A P++EK +S + T ++P+ + G+ F Sbjct: 62 EILSEQLGEP----VTLLFAADPALEKPVASKTQT-VTPVQSG--------GETGDQENF 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S LD R+ F +F+ G N+ A NPLFIH VGLGKTH++Q Sbjct: 109 HSGLDPRYTFDSFVVGGCNQFVHAA-----AARVAEAPAAAYNPLFIHGGVGLGKTHVMQ 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ RV+Y+++E FM + +++R + K++ R++D+LL+DD+QF+ GK Sbjct: 164 AIGNRVLEIDPDKRVLYISSENFMTQLINSLRFKRVFDFKENFRSVDVLLVDDIQFIAGK 223 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V AD P E+E L+ R+RSR G+ + D E R Sbjct: 224 KATQEEFFHTFNALYEAKKQIVMTADSFPHEIEHLEERLRSRFGMGLVADMQPPDLETRV 283 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL+ + L + +EV +A V T+ REL+GA ++ S +T + Sbjct: 284 AILQK-----KAGSEGLRLADEVAFFLADAVQTNVRELEGALIRVSAYASLTGKPITMAL 338 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L +V G+ + + +E IQ+ VA +Y + DL SN R R PRQ+AMYL K + Sbjct: 339 VKESLKDIVR-GQDRAVTVEQIQKTVANYYKVKVTDLCSNSRSRIYSHPRQIAMYLCKQL 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S+PEIG RFG RDHTTVL+AV +V+K + L E+ LK ++ + Sbjct: 398 TQHSYPEIGHRFGGRDHTTVLYAVSQVDKKQGSTPALADELASLKSMLQK 447 >gi|255283813|ref|ZP_05348368.1| DNA replication initiator protein, ATPase [Bryantella formatexigens DSM 14469] gi|255265696|gb|EET58901.1| DNA replication initiator protein, ATPase [Bryantella formatexigens DSM 14469] Length = 449 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 138/480 (28%), Positives = 251/480 (52%), Gaps = 41/480 (8%) Query: 31 LEVNCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPT--NFLKAWIK 86 + + E+ + + R++ +++ + +W + LK +S +N V + V + +I Sbjct: 1 MNIIEEN-WEEILERVQTEHEMTYVSFDTWLKPLKVYSFENNTVSILVASSQQMYLKYIN 59 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 +YL I E +E ++ P + + ++ + Sbjct: 60 KKYLLPIKVAIAEVTGLDCNIEFIL---------------------PEDADRMEADKLDS 98 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 ++ V + L+ R+ F TF+ G +N A A+ ++AE Y NPLFI+ VG Sbjct: 99 QKMSVNVDKANLNPRYTFDTFVVGKNNNFAHAASLAVAESPGEIY-----NPLFIYGGVG 153 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLL 263 LGKTHL+ +IA+ ++R P+ +V+Y+T+E F IR ++ R+ID+L Sbjct: 154 LGKTHLMHSIAHFILERNPDTKVLYVTSETFTNEVIENIRSGNNTAMSKFREKYRSIDVL 213 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF+ GK Q EF H N L S KQ++ ++D+PP E+ +L+ R++SR + G+ Sbjct: 214 LIDDIQFIIGKESTQEEFFHTFNDLHSSGKQIIISSDKPPKEMSTLEERLKSRFEWGLIA 273 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + DYE R +IL+ ++E +I+++V+ ++A + ++ REL+GA N +V Sbjct: 274 DISSPDYETRMAILRK-----REELDGYHIDDDVIQYIATNIKSNIRELEGALNIVVAFG 328 Query: 383 SFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + + E A E L ++++ E + + E I + +H++ISR DL ++R +V P Sbjct: 329 NLNKRKIDLESAKEALKNIISPDEKRVITPELIINTICEHFHISREDLTGSKRNSEIVFP 388 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+AMYL + MT F EIG+ G +DH+TV+H K+ ++ + +K + +L + I+ Sbjct: 389 RQIAMYLCREMTQTQFKEIGKIMGGKDHSTVIHGYDKIAYEVKNNENVKNTINILIKKIN 448 >gi|114326825|ref|YP_743982.1| chromosomal replication initiation protein [Granulibacter bethesdensis CGDNIH1] gi|114314999|gb|ABI61059.1| chromosomal replication initiator protein dnaA [Granulibacter bethesdensis CGDNIH1] Length = 525 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 173/488 (35%), Positives = 284/488 (58%), Gaps = 36/488 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V RL+ +VG Y +W +++ + + V + +PT FL+ W+++ Y + + L+Q Sbjct: 46 WNRVRQRLRAEVGEVEYRTWLRQMTLAGLEADEVAIHLPTRFLRDWVRSHYSDRLNTLWQ 105 Query: 99 EEHSRIQGVEILVRSVAL----------PSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 E+ ++ V+I + SV S +S +++P+++ ++ + Sbjct: 106 AENPAVRRVDIRLGSVTESGHGLTESLYESGIVQKASAPAERVAPVSSVADQASLPEADT 165 Query: 149 TISPVFGSP-------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 P LD RF F TF+ G N A A+ +AE + + Sbjct: 166 LAPSSLAGPALDEAGRAGDMHALDRRFSFETFVVGKPNEFAYACARRVAESPA----SPG 221 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIK-RQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLF++ VGLGKTHL+ AIA + +P + V Y++AE FM+RF +AIR + K Sbjct: 222 FNPLFLYGGVGLGKTHLMHAIAWELNRPGRPPVSVAYMSAEKFMYRFIAAIRSQSTMEFK 281 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + LR++D+L++DD+QFL GK Q EF H N+L+D+ KQ+V +AD+ PS+L L+ R+R Sbjct: 282 EELRSVDVLMVDDLQFLIGKDNTQEEFFHTFNALVDAGKQIVVSADKSPSDLSGLEDRLR 341 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +RL G+ L +E+R SIL+ ++ + + ++ +VL +A +T++ REL+G Sbjct: 342 TRLGCGMVADLHATTFELRISILE-----AKVQKAGVEVSPKVLEFLAHKITSNVRELEG 396 Query: 374 AFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A N+L+ + F LT E A E+L ++ +++ IE+IQR VA+H+NI D+ S Sbjct: 397 ALNRLIAHANLFGRALTLETAQEVLHDILK-AHDRRITIEEIQRRVAEHWNIRLTDMSSA 455 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR R V RPRQVAM+L+K +T RS PEIGR+FG+RDHTTV+HA+ +V +++E D ++ Sbjct: 456 RRARAVARPRQVAMFLAKQLTSRSLPEIGRKFGNRDHTTVMHAISRVTELMERDAAFAED 515 Query: 493 VELLKRLI 500 VELL+R++ Sbjct: 516 VELLRRML 523 >gi|182411827|ref|YP_001816893.1| chromosomal replication initiator protein DnaA [Opitutus terrae PB90-1] gi|177839041|gb|ACB73293.1| chromosomal replication initiator protein DnaA [Opitutus terrae PB90-1] Length = 467 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 149/469 (31%), Positives = 242/469 (51%), Gaps = 13/469 (2%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ V K DV+ WF+ + + + L VP +F WI + YL+ IT+ Sbjct: 9 SLWETVKCDFKELFPEDVFQMWFEPMVCLEATEDSMVLGVPNDFAAIWIHDNYLDLITQR 68 Query: 97 FQEEHSRIQGVEIL-VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + R+ V + + P+ + L P + + +P G+ V Sbjct: 69 LRLTAGRLVNVTLKKSDAAQAPAPAFANHRATTAALEPAHRGRTATPRRNGRYDDRSVAA 128 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ R F TF+ GS+N++ A + NPLFI+ GLGKTHL+ A Sbjct: 129 ATLNPRNTFETFVVGSNNQM-----AHAAALAVAQAPAQAYNPLFIYGDTGLGKTHLMHA 183 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I +A ++ P+ RV YL+ E F F A+++N + R++D+LLIDD+QFL GK Sbjct: 184 IGHAILRNNPDARVAYLSTEKFTNEFIQALQENSLTKFRQRYRHVDVLLIDDVQFLAGKE 243 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 IQ EF H N L +S KQVV ++DR SE++ L+ R+ SR + G+ + D+E R + Sbjct: 244 RIQEEFFHTFNDLFESGKQVVLSSDRRASEIQKLESRLVSRFEWGLPADIQAPDFETRLA 303 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+++ A + ++ +L +A+ ++ + R L+GA ++ + + L Sbjct: 304 ILRSKAACMK-----FDLPAPILNFIAQNISKNIRRLEGALIKVASYSALTSKPLDLATT 358 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + LL ++ + IE IQ+ VA HY I +D+ S RR + PRQ+AMYL++ +T Sbjct: 359 EMLLQDVLMEQAQNVLTIETIQKRVADHYQIRHSDMTSKRRPNNIAIPRQIAMYLTRTLT 418 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S EIG FG RDH TV+HA + V+ M+E D T + ++ LK +S+ Sbjct: 419 KHSLQEIGEAFGGRDHGTVIHACKAVDNMMEQDSTTRGSIDFLKAQLSK 467 >gi|86607504|ref|YP_476266.1| chromosomal replication initiation protein [Synechococcus sp. JA-2-3B'a(2-13)] gi|123765419|sp|Q2JHS1|DNAA_SYNJB RecName: Full=Chromosomal replication initiator protein DnaA gi|86556046|gb|ABD01003.1| chromosomal replication initiator protein DnaA [Synechococcus sp. JA-2-3B'a(2-13)] Length = 467 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 248/472 (52%), Gaps = 16/472 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++++ + ++ L+ Q+ + +W + + S++ N + + P+ + + W++ Y Sbjct: 1 MDISLDQLWDEALCHLQVQLSRPTFEAWIKTARAESLVDNRLTICTPSEWARGWLQKHYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TIT++ Q VE V A E + + S T + S + + L Sbjct: 61 STITEVVQRVAGIPLQVEFSVSPHASVEAEPPSRAISPTSGRAGSLPASTT-LGLEVGGS 119 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P+ L+ ++ FS F+ G +NR+A AA ++A+ Y NPLF+ VGLGKT Sbjct: 120 LPMRAPDLNPKYSFSRFVVGPNNRMAHAAALAVADKPGRAY-----NPLFLCGGVGLGKT 174 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P +V Y++ E F AIR + + ++ R++D+LL+DD+QF Sbjct: 175 HLMQAIGHYQLEANPQAKVFYVSTERFTNDLIDAIRRDSMQSFREHYRDVDILLVDDVQF 234 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L +S KQ+V AADR P + L R+ SR G+ + D Sbjct: 235 IEGKEYTQEEFFHTFNTLHESGKQIVLAADRSPHLIPRLQERLCSRFSMGLIAEIQSPDI 294 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK + E +N+ +V+ ++A T T++ REL+GA + V S + + + Sbjct: 295 ETRMAILKK-----KAEYEGMNLPADVIEYIATTYTSNIRELEGALIRAVAYVSISGLPM 349 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E +L+ E K++ + I +V + + I R+ LL + R R + + RQ+AM+L Sbjct: 350 SVETIQPILN---PPSEPKEITADMITDVVCEEFGIDRDSLLGSSRKRDISQARQIAMFL 406 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + T S P+IG FG +DHTTVL++ KV ++ + +++++ L + Sbjct: 407 MRHYTNLSLPKIGDYFGGKDHTTVLYSCEKVSQLQRQSLQFERQLQKLVERL 458 >gi|145218823|ref|YP_001129532.1| chromosomal replication initiator protein DnaA [Prosthecochloris vibrioformis DSM 265] gi|145204987|gb|ABP36030.1| chromosomal replication initiator protein DnaA [Chlorobium phaeovibrioides DSM 265] Length = 487 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 124/477 (25%), Positives = 230/477 (48%), Gaps = 13/477 (2%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 + R + + ++ ++ + P + +WF +K + + + VP+ F WI+ Sbjct: 16 ESRAADAAEQHVWKSCLEAIREHINPLAFQTWFSPIKPLGLSGGELTIEVPSTFFYEWIE 75 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 Y + + ++ + + + T P + Sbjct: 76 EHYSQFLNTALKKIIGPEARLMYSIVMDKSQTEPVTIQLPLQNSQPDKKASEEAVKKSSD 135 Query: 147 K-QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + F + L+S++ F T I G N +A AA+S+A+ NPL I+ V Sbjct: 136 SFERDIERFETQLNSKYTFDTLIRGDCNSLAFAAAKSVAQNPGQN----AFNPLVIYGGV 191 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTH++QAI N + + +V+Y+++E F F +AI++ R ID+L+I Sbjct: 192 GLGKTHMMQAIGNTVRQEREGAKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRTIDVLII 251 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF GK Q E H+ N+L S KQ++ +ADRP ++ ++ R+ SR G+S + Sbjct: 252 DDIQFFSGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKNIKGIEDRLISRFNWGLSADI 311 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 DYE R +I+ +S+ + ++++E V+ +A +T + REL+G +L+ S Sbjct: 312 QPPDYETRKAII-----LSKLQQSGVDLDENVIEFIANNITDNVRELEGCIVKLLAARSL 366 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + L ++ K++ ++ I++++ + Y I+ NDL + + + RQ Sbjct: 367 DNRDIDLSFTKLTLKDIIR-HSAKQLNLDTIEKVICEFYAITSNDLKGKSKKKEIATGRQ 425 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +AMYL+K +T S IG FG RDH+TV+HAV + + +E + + + ++R I Sbjct: 426 IAMYLAKQLTESSLKTIGLHFGGRDHSTVIHAVNTIARRIEAEGEDQGRINEIRRRI 482 >gi|223935395|ref|ZP_03627312.1| chromosomal replication initiator protein DnaA [bacterium Ellin514] gi|223895805|gb|EEF62249.1| chromosomal replication initiator protein DnaA [bacterium Ellin514] Length = 462 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 144/473 (30%), Positives = 242/473 (51%), Gaps = 24/473 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 ++++ E I+T +L+ + D + WF L+ ++ + + L V +F + W+K+ Y Sbjct: 10 NMQISAEHIWTAAQEKLRAMLNGDTFNLWFAPLRPQAIHGDCIVLEVANDFCEVWLKDNY 69 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + ++ R V+ +V + + P K+ S Sbjct: 70 IGLLQEVLTITSKRPLQVKFVVATQTASTTPAGLDIPEKVKVVEATAPERSS-------- 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + + + F TF+ G +N A AAQ++A+ Y NPLF++ VGLGK Sbjct: 122 ----GEAAFNPKNTFETFVVGGNNNFAHAAAQAVAQAPGKSY-----NPLFLYGGVGLGK 172 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + + + RV Y+++E F + AI++N + R D+LLIDD+Q Sbjct: 173 THLLHAIGHHVLSHKKGARVAYVSSEKFTNEYIDAIQNNQIAKFRKKYRQTDVLLIDDIQ 232 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK IQ EF H N+L ++ KQ+V DRP SE+++L+ R+ SR + G+ L D Sbjct: 233 FLAGKERIQEEFFHTFNALHEAHKQIVLTCDRPASEIQNLEHRLVSRFEWGLVTDLQPPD 292 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R +IL+ + + + E++L +A + + R L+GA ++ S Sbjct: 293 IETRMAILRK-----KAASMGVELPEDILNFLANRIRANIRRLEGALIRVASYASLTGKK 347 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 LT E+ + LL +++ + IE IQ+ VA+H++I D+ S RR + PRQ+AM+ Sbjct: 348 LTIEVVEGLLREVLHEEGRYSINIETIQKKVAEHFDIRLADMTSKRRPENIAFPRQIAMF 407 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 LS+ +T S IG FG RDH TVLHA R V+ +E D ++++ V L++ + Sbjct: 408 LSRQLTEGSLNSIGEAFGGRDHGTVLHACRLVKDRMEVDPSVRQVVSYLEKQL 460 >gi|157964743|ref|YP_001499567.1| chromosomal replication initiation protein [Rickettsia massiliae MTU5] gi|167016904|sp|A8F284|DNAA_RICM5 RecName: Full=Chromosomal replication initiator protein DnaA gi|157844519|gb|ABV85020.1| Chromosomal replication initiator protein DnaA [Rickettsia massiliae MTU5] Length = 463 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 173/470 (36%), Positives = 287/470 (61%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP + +T + + I ++ + I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGITQTVIALPTKTFADIGSSELNAENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAESSG---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKILQ 462 >gi|292669293|ref|ZP_06602719.1| ATPase [Selenomonas noxia ATCC 43541] gi|292649134|gb|EFF67106.1| ATPase [Selenomonas noxia ATCC 43541] Length = 478 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 129/480 (26%), Positives = 236/480 (49%), Gaps = 21/480 (4%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + E ++ V ++ + D W R+ ++ + + L+V F K +I+ RYL Sbjct: 6 NLPLEPLWQKVLAKTDGILPKDAVNQWISRIMPVALENGELVLAVRDTFTKQYIEPRYLA 65 Query: 92 TITKLFQEEHSRIQGVEILV---------RSVALPSVEKTASSPSITKLSPINTNISKSP 142 + + + ++V S+ P T P + +P ++ +P Sbjct: 66 LLGDAVHQALGADYTIRLVVDAKKAEPAKESILRPEPAPTKEEPKQSADTPAQGSLPLTP 125 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 +P + L+ ++ F F+ G SN+ A+++A+ NPLFI+ Sbjct: 126 TPSDTHAAAPDDATTLNPKYTFDAFVTGRSNQFPYAMAKAVADAPG----LPSHNPLFIY 181 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VGLGKTHL+ A+ + + P+ RV+Y+ + F F +IR+ ++ +ID+ Sbjct: 182 GGVGLGKTHLMHAVGHKILADHPDRRVLYIASTDFTNEFIRSIREKNMDAFREKYYSIDV 241 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF G+ Q EF N L D+ Q++ +DR P +++ L+ R+ SR GG Sbjct: 242 LLIDDIQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQDVKGLEDRLISRFAGGAP 301 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + ++E R +IL+ + + +++I E+V+ ++A V ++ REL+GA +L+ Sbjct: 302 VDIQPPEFETRVAILQK-----KAQSEEVDIPEDVVTYIASRVDSNIRELEGALTRLIKY 356 Query: 382 HSFAPILTAEIA-DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + E L + + +++ +E I+R+V H+ ++ D+ S +R + Sbjct: 357 ASTMRMPIDETTCVAALGNYLRGETGRRITMEMIERIVCTHFKVTSEDIRSTKRSNDIAY 416 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL +T S+P IG F +RDH+TV+HA +K++ + D V+ L I Sbjct: 417 PRQIAMYLCHELTDVSWPTIGGFF-NRDHSTVIHAHKKIQSLTSEDAATDALVKSLSIQI 475 >gi|310657317|ref|YP_003935038.1| chromosomal replication initiator protein DnaA [Clostridium sticklandii DSM 519] gi|308824095|emb|CBH20133.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Clostridium sticklandii] Length = 440 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 137/472 (29%), Positives = 247/472 (52%), Gaps = 37/472 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ S++ + + K + Y S+F ++ +V N + L P F+K I+N +L Sbjct: 1 MDAASLWEKILNVYKTHITKQFYESFFSSIEPVTVRKNKLILLAPNYFIKEVIENNHLNN 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + ++ S ++I++ I+ Sbjct: 61 LHNIAKDISSTSYEIQIILDL----------------------EEITDMYSDSDSDNGKD 98 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ F TF+ G+SNR A A ++AE + Y NPLFI+ VGLGKTHL Sbjct: 99 IRSYSLNPKYTFDTFVIGNSNRFAHAACVAVAESPAKAY-----NPLFIYGGVGLGKTHL 153 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + + N +++YL++E F ++I+D+ ++ RN+D++L+DD+QF+ Sbjct: 154 MHAIGHYIVSNNKNSKILYLSSETFTNELINSIKDDKNEAFRNKYRNVDVILVDDIQFIA 213 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D+ KQ++ ++DR P E+ +L+ R+RSR + G+ + D+E Sbjct: 214 GKERTQEEFFHTFNALHDANKQIIISSDRTPKEIPTLEDRLRSRFEMGLIADIQPPDFET 273 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + + + +I EV++H+A+ + ++ REL+GA +++ +T Sbjct: 274 RIAILRKKAQVENR-----DIPNEVMVHIAKNIKSNIRELEGALVRVIAYSDLTKEEITY 328 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L + + ++ I+ VA+ +++ D S +R R + PRQ+AMYL + Sbjct: 329 ELACEALKDIFQSSANNELNSSAIKEKVAQIFSVKMEDFQSKKRTRAIAYPRQIAMYLCR 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG FG RDHTTV+HA KV +E D +K ++ R+I++ Sbjct: 389 ELTDMSLPKIGEEFGGRDHTTVIHACDKVASDIEKDEDIKNKIN---RIITD 437 >gi|67458756|ref|YP_246380.1| chromosomal replication initiation protein [Rickettsia felis URRWXCal2] gi|75536787|sp|Q4UMJ3|DNAA_RICFE RecName: Full=Chromosomal replication initiator protein DnaA gi|67004289|gb|AAY61215.1| Chromosomal replication initiator protein DnaA [Rickettsia felis URRWXCal2] Length = 463 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 285/470 (60%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVIELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAESSG---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKILQ 462 >gi|256370825|ref|YP_003108649.1| chromosomal replication initiator protein DnaA [Acidimicrobium ferrooxidans DSM 10331] gi|256007409|gb|ACU52976.1| chromosomal replication initiator protein DnaA [Acidimicrobium ferrooxidans DSM 10331] Length = 458 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 147/469 (31%), Positives = 242/469 (51%), Gaps = 22/469 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E+ + ++ + VG + +WF+ L + + L+ P+ K ++ +Y + + Sbjct: 4 PEASWEAIAQAFRTAVGEATWLTWFRTLAPQELSDQQIVLTTPSPLAKERLETKYRDVLE 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + V + VR+ TA S + S + + Sbjct: 64 DVLTPIMGARVPVAVRVRADVPDETPTTAHS---------LFDSSPTSSPTPSRRNGRGS 114 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S D R+ F F+ GSSNR A AA S+AE + Y NPLFIH GLGKTHLL Sbjct: 115 SSTFDPRYTFEAFVIGSSNRFAHAAALSVAETPARSY-----NPLFIHGDAGLGKTHLLH 169 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + PNL Y++ E F+ F AI+ N K R D+LL+DD+QFL+GK Sbjct: 170 AIGNYARENYPNLLTTYVSTETFLNEFVDAIKRNQTSEFKARYRACDILLVDDIQFLEGK 229 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ EF H N+L + KQ+V +DRPP L +L+ R+RSR G+ + D E R Sbjct: 230 EAIQEEFFHTFNTLYGAQKQIVLTSDRPPRALATLEDRLRSRFAMGLITDVQPPDLETRA 289 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL+ + ED + + V+ +A ++T + REL+GA +L + + +T + Sbjct: 290 AILRR-----KAEDAGVTVPATVIEFIAASITDNIRELEGALTRLAAFSTLSQTGITLTM 344 Query: 393 ADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A+++LS L++ T ++ ++ A +N++ D+ R R V RQ+AMY+ + Sbjct: 345 AEQVLSDLISQHATQRQRTPAEVIAATAALFNLTPEDITGASRKRPVAVARQIAMYVVRE 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S+PEIGR FG +DHTTV+HAV +V+++++ + + ++V+ L + + Sbjct: 405 LTELSYPEIGRAFGGKDHTTVMHAVSRVQELMQESVEIYEQVDQLFKSL 453 >gi|187479881|ref|YP_787906.1| chromosomal replication initiation protein [Bordetella avium 197N] gi|123765885|sp|Q2KTI9|DNAA_BORA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|115424468|emb|CAJ51022.1| chromosomal replication initiator protein [Bordetella avium 197N] Length = 483 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 142/492 (28%), Positives = 232/492 (47%), Gaps = 37/492 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNRYLETI 93 + + SRL+ ++ P ++W + L + L V P F W++ + I Sbjct: 2 KEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDEAQAVLRVAAPNRFKLDWVRKNFSHQI 61 Query: 94 TKLFQEEHSRIQGVEILVRS-VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 L E + R V+ + S P + T + ++ + + +P Sbjct: 62 EALAAEWYQRPVQVQFELPSHSTTPRIPVTPRAAVAPVAPASAAPLAPAAPPVAAAYSAP 121 Query: 153 VF--------------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 S L++ F F+ G +N++A AA +AE Y Sbjct: 122 PEPPAAPAQTSAAVDAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY- 180 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPLF++ VGLGKTHL+ AI NA + +RV Y+ A+ ++ A + + Sbjct: 181 ----NPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDD 236 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K ++DLLLIDD+QF GK Q EF + +++ KQ++ +D P EL +D R Sbjct: 237 FKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSR 296 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + SR G++V + + EMR +IL + + E + + EEV +A+ + ++ REL Sbjct: 297 LISRFDSGLTVAIEPPELEMRVAIL-----LRKAESEGVPMPEEVAFFIAKHLRSNVREL 351 Query: 372 DGAFNQLVFRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 +GA +++ F L ++ E L L++ ++ +E+IQ+ VA Y I D+ Sbjct: 352 EGALRKVLAYARFHGREALNVDVCKEALKDLLSVSNG-QITVENIQKTVADFYKIKVADM 410 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 S RR + PRQVAMYL+K +T +S PEIG FG RDHTTVLHAVRK+ L Sbjct: 411 YSKRRPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQAEL 470 Query: 490 KKEVELLKRLIS 501 + +L++ + Sbjct: 471 NHTLHVLEQTLK 482 >gi|81427617|ref|YP_394614.1| chromosomal replication initiation protein A [Lactobacillus sakei subsp. sakei 23K] gi|123755887|sp|Q38ZS4|DNAA_LACSS RecName: Full=Chromosomal replication initiator protein DnaA gi|78609256|emb|CAI54303.1| Chromosomal replication initiation protein A [Lactobacillus sakei subsp. sakei 23K] Length = 448 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 245/468 (52%), Gaps = 27/468 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + ++ + + + + + +W + K + N + + VP+ K + +N + Sbjct: 3 DLQELWNYLQEKFQTDLTTVGFNAWIKTAKPLAFRANELLIEVPSVLHKEYWENNLATKV 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + E +E+ P S ++T L P + ++ +T + + Sbjct: 63 VEGAYEFAE----IELT------PIFVLPGESDNLTPLEPEEEH-----VLTKAETPTFL 107 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+S++ F TF+ G N++A AA ++E V NPLF++ VGLGKTHL+ Sbjct: 108 RETHLNSKYTFDTFVTGKGNQMAHAAALVVSEEPG-----VLYNPLFLYGGVGLGKTHLM 162 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI + ++ +P V Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 163 QAIGHQLLESKPETNVKYVTSEAFANDFINSIQTKNQEKFRQEYRNVDLLLVDDIQFFAD 222 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N L + KQ+V +DR P+E+ L R+ SR + G+ V + D E R Sbjct: 223 KEGTQEEFFHTFNDLYNDKKQIVLTSDRLPNEIPKLQERLVSRFKWGLPVDITPPDLETR 282 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+N + + L I E+ L ++A + ++ REL+GA ++ + +T Sbjct: 283 IAILRN-----KADAEHLEIPEDTLSYIAGQIDSNVRELEGALVRVQAYATMQNAEITTS 337 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L G++ ++ I IQ +VAK+Y+++ DL +RV+ +V PRQ+AMYL++ Sbjct: 338 LAADALKGLKLNGKSSQLSIAKIQSVVAKYYSLTVADLKGRKRVKEIVLPRQIAMYLARE 397 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 MT S P+IG+ FG +DHTTV+HA ++ + L TD LK + LK Sbjct: 398 MTDSSLPKIGQEFGGKDHTTVMHAHERISQSLTTDQNLKDAILDLKNT 445 >gi|34581452|ref|ZP_00142932.1| chromosomal replication initiator protein DnaA [Rickettsia sibirica 246] gi|28262837|gb|EAA26341.1| chromosomal replication initiator protein DnaA [Rickettsia sibirica 246] Length = 463 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 173/470 (36%), Positives = 285/470 (60%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T ++ I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVTALPTKTFGDIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDIRFTFDNFVVGAPNELAYAAARAVAESSG---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQHNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++L DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLANDIELREEINLLMKILQ 462 >gi|157273531|gb|ABV27430.1| chromosomal replication initiator protein DnaA [Candidatus Chloracidobacterium thermophilum] Length = 492 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 146/478 (30%), Positives = 246/478 (51%), Gaps = 20/478 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 L + + +T ++ ++ + +++WF+ + + + ++L VP + WI Y Sbjct: 28 LAMMDDEKWTSFLREIEKRINHESFSTWFKPVTLQACQGDTIYLRVPNRSYEDWITETYQ 87 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSV-----EKTASSPSITKLSPINTNISKSPIIL 145 E + + + + + P E P+ + I Sbjct: 88 EDVEEALKAVGCAGARLVFVYAESQEPKPANGLLEDDPPKPTGDISFGGFDSALSGSITG 147 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + PL+ R+ F TF+ GS N+ A AA ++A+ S Y NPLFI+ V Sbjct: 148 ARIVDLEPLELPLNPRYTFETFVVGSCNQFARAAAMAVADAPSRTY-----NPLFIYGGV 202 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ AI +A R ++R+VY+++E FM +AIR + A ++ R+ID+LLI Sbjct: 203 GLGKTHLMHAIGHAIRNRDRHMRLVYISSEKFMNELINAIRYDKAQAFREKYRSIDVLLI 262 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H N+L D+ KQ+V ++D PP E+ +L+ R+ SR + G+ L Sbjct: 263 DDIQFIAGKERTQEEFFHTFNALYDAQKQIVISSDCPPREIPTLEERLHSRFEWGLIADL 322 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E + +ILK + + K+++++ V + +A + ++ REL+G+ +L+ S Sbjct: 323 QPPDLETKVAILKR-----KADLEKIDLSDNVALFIAGKIKSNIRELEGSLIRLIAYASL 377 Query: 385 A-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + E+ E+L+ E + + IE IQR+V+ HY + +DL S R + PRQ Sbjct: 378 KQRPIDIELCKEVLN---IEEEERPITIEMIQRVVSDHYGLRVSDLKSKNNSRNIAVPRQ 434 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAMYL K +T S PEIGR FG++ HTTVLH+ K+ ++ T + + L + Sbjct: 435 VAMYLCKQLTNHSLPEIGRHFGNKHHTTVLHSCEKISRLYHTQSDFHRLINNLISSLK 492 >gi|194335183|ref|YP_002016977.1| chromosomal replication initiator protein DnaA [Pelodictyon phaeoclathratiforme BU-1] gi|194307660|gb|ACF42360.1| chromosomal replication initiator protein DnaA [Pelodictyon phaeoclathratiforme BU-1] Length = 487 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 134/472 (28%), Positives = 240/472 (50%), Gaps = 17/472 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ + ++ ++ P + +WF +K S + + + VP+ F WI+ Y + Sbjct: 21 HQVWEACLNAIREKINPLAFKTWFFPIKPLSFSGSELTIEVPSQFFYEWIEENYSSFLKL 80 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS---- 151 ++ + + T P ++ S++ K + Sbjct: 81 ALKDVIGPEAKLMYSIVMDKSQGQPVTIELPHQNAMNGDFIAASRATEARAKNSEEFEKN 140 Query: 152 -PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F + L+S++ F T I G N +A A++S+A+ NPL I+ VGLGKT Sbjct: 141 LARFETHLNSKYTFDTLIRGDCNSLAFAASKSVAQSPGQN----AFNPLVIYGGVGLGKT 196 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 H++QAI N+ + + + RV+Y+++E F F +AI++ R+ID+L+IDD+QF Sbjct: 197 HMMQAIGNSVRENRLSERVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRSIDVLIIDDIQF 256 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q E H+ N+L S KQ++ +ADRP +++ ++ R+ SR G+S + DY Sbjct: 257 FSGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKDIKGIEDRLISRFNWGLSADIQPPDY 316 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +I+ +S+ +N++E V+ +A VT + REL+G +L+ S + Sbjct: 317 ETRKAII-----LSKLHQSGVNLDETVIEFIATNVTENVRELEGCIVKLLAAQSLDNREI 371 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + L ++ TK++ ++ I++ V +++I+ NDL + + + RQVAMYL Sbjct: 372 DLQFTKSTLKDIIR-HTTKRLTLDTIEKAVCSYFSITPNDLKGKSKKKEIAVGRQVAMYL 430 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SK++T S IG FG RDH+TV+HAV K ++T +K++E +K+ I Sbjct: 431 SKLLTDSSLKTIGLHFGGRDHSTVIHAVNTTTKKVDTIGDERKKIEEIKKRI 482 >gi|294338441|emb|CAZ86767.1| Chromosomal replication initiator protein dnaA [Thiomonas sp. 3As] Length = 484 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 147/494 (29%), Positives = 238/494 (48%), Gaps = 36/494 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLK--FHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E + ++L + +A+W + L S N L VP F W++++Y Sbjct: 1 MTQEQSWQQCCAQLATVIPDQQFAAWIKPLSSPHWSEDGNTAILHVPNRFKLDWLRSQYG 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT+ R VE +V+ + + + + S ++ + Sbjct: 61 ARITESLSAIVGRPVQVEFIVQKAPARAAMHHSGAQGLQSGSGTSSTSGSAQATHSADHA 120 Query: 151 SP---------------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 +P + S L+ F T + G +N++A AA +AE Sbjct: 121 TPQQLASPDGVSNAARDAAEADALERSRLNPMLSFETLVTGKANQLARAAAIQVAENPGR 180 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLFI+ VGLGKTHL+ A+ NA + +QP R+ YL AE F+ A + Sbjct: 181 SY-----NPLFIYGGVGLGKTHLMHAVGNALLAQQPGARIRYLQAEQFVSEVVRAYQRKA 235 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 K ++DLLLIDD+QF GK Q EF + +L+ Q++ +D P EL + Sbjct: 236 FEEFKRYYHSLDLLLIDDVQFFAGKDKTQEEFFYAFEALITKRSQIILTSDTYPKELREM 295 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 D R+ SR G++V + + EMR +IL + + EEV VA+ V ++ Sbjct: 296 DQRLVSRFDSGLTVAIEPPELEMRVAILLRKADAELAH-----LPEEVAFFVAKNVRSNV 350 Query: 369 RELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +++ F ++ +A E L L++ +++ +E+IQ+ VA Y I Sbjct: 351 RELEGALRKILAYARFSGQDVSIGLAKEALKDLLSLQ-NRQVSVENIQKTVADFYKIKVA 409 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 410 DMYSKKRPASIARPRQIAMYLAKELTHKSLPEIGELFGGRDHTTVLHAVRKIGQERIKLQ 469 Query: 488 TLKKEVELLKRLIS 501 L +++ +L++ + Sbjct: 470 ELNQQLHVLEQTLK 483 >gi|312794750|ref|YP_004027672.1| Chromosomal replication initiator protein dnaA [Burkholderia rhizoxinica HKI 454] gi|312166525|emb|CBW73528.1| Chromosomal replication initiator protein dnaA [Burkholderia rhizoxinica HKI 454] Length = 530 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 147/526 (27%), Positives = 245/526 (46%), Gaps = 71/526 (13%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L ++ P YA+W + L + V ++ P F W+K+++ I Sbjct: 15 NDFWQHCSTLLARELTPQQYATWIKPLTLVDFDAEASTVRIAAPNRFKLDWVKSQFSGRI 74 Query: 94 TKLFQEEHSRIQGVEILVRSVA---LPSVEKTASSPSITKL------------------S 132 T L ++ V+ ++ A + + SP + S Sbjct: 75 TDLARDFWQHPVHVQFVLDPKAGMKASPARRASGSPLANAVDAVIAAASGTSAAALANGS 134 Query: 133 PINTNISKSPI-----------------------------------ILGKQTISPVFGSP 157 P ++++ + S S Sbjct: 135 PPQPTMAQALSTASAATADGNAELDLPNLDANEAAAARRNFRAGASAPSPEADSAYERSK 194 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKTHL+ AI Sbjct: 195 LNPVLTFENFVTGKANQLARAAAIQVADNPGVSY-----NPLFLYGGVGLGKTHLIHAIG 249 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N ++ + N R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 250 NQLLQDKANARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKSRT 309 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR +IL Sbjct: 310 QEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL 369 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 + + + + +NE+V VA+ + ++ REL+GA +++ F +T E+ E Sbjct: 370 -----MRKAQSEGVALNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKE 424 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T + Sbjct: 425 ALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQK 483 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 484 SLPEIGELFGGRDHTTVLHAVRKISDERGKDAQLNHELHVLEQTLK 529 >gi|148239038|ref|YP_001224425.1| chromosomal replication initiation protein [Synechococcus sp. WH 7803] gi|166215365|sp|A5GJL3|DNAA_SYNPW RecName: Full=Chromosomal replication initiator protein DnaA gi|147847577|emb|CAK23128.1| Chromosomal replication initiator protein dnaA [Synechococcus sp. WH 7803] Length = 464 Score = 445 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 247/474 (52%), Gaps = 20/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ +++ V L++ + + +W + + + + L P +F W++ Y Sbjct: 1 MELTGSELWSKVQQTLQSNLSKPTFETWIRPAQCSAFTGGTLTLLAPNSFACNWLRKNYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI + E R V + R V + T +P+ S + ++ K Sbjct: 61 GTIADVAGEILGRSVVVMVEARDVEPRAEASTPRTPAEPAESAPPAPMPEAVTTAPK--- 117 Query: 151 SPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P+ P L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGK Sbjct: 118 -PLRRLPGLNMRYVFNRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLGK 171 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+Q Sbjct: 172 THLMQAIGHYRLEIDPEARVFYVSTETFTNDLIVAIRRDGMQAFRDRYRAADLILVDDIQ 231 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D Sbjct: 232 FIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPD 291 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL+ + E ++ + +++ +++ T++ REL+GA + V FA I Sbjct: 292 LETRMAILQK-----KAEQERVALPRDLIQYISGRFTSNIRELEGALTRAVA---FASIT 343 Query: 389 TAEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E ++ ++ +G+ ++ + + V++ + +S +D+ S+ R R V + RQV M+ Sbjct: 344 GMPMTVESVAPMLDPSGQGVEVTPQQVIDKVSEVFGVSVDDMRSSSRRRAVSQARQVGMF 403 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + T S P IG FG +DHTTV++A+ ++EK L +D L +V+ +K L+ Sbjct: 404 LMRQGTGLSLPRIGDTFGGKDHTTVMYAIEQIEKKLSSDPQLASQVQKVKDLLQ 457 >gi|225575691|ref|ZP_03784301.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM 10507] gi|225037095|gb|EEG47341.1| hypothetical protein RUMHYD_03784 [Blautia hydrogenotrophica DSM 10507] Length = 449 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 149/479 (31%), Positives = 257/479 (53%), Gaps = 41/479 (8%) Query: 31 LEVNCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL-KAWIKN 87 + + E + + +K + + + +W + LK +SV NIV + VP+ + +I Sbjct: 1 MNIVAEK-WDEILQTIKIDHDLSDISFDTWLKPLKVYSVEGNIVTILVPSEQVGLNYINK 59 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +Y + E V+ + V+K S I+ Sbjct: 60 KYKLPLQVTISELTGID---RCEVQFILSDDVKKITSKNLIS------------------ 98 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + L+ R+ F TF+ GS+N+ A A+ ++AE Y NPLFI+ VGL Sbjct: 99 -NDTRFEEANLNPRYTFGTFVVGSNNKFAHAASLAVAESPGEIY-----NPLFIYGGVGL 152 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLL 264 GKTHL+ +IA ++ P+ +V+Y+T+E F AIR+ +D RNID+LL Sbjct: 153 GKTHLMHSIARFILEHNPDSKVLYVTSEEFTNELIEAIRNGNNTAMTQFRDKYRNIDVLL 212 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ GK Q EF H NSL + KQ++ ++D+PP ++E L+ RIRSR + G+ Sbjct: 213 VDDVQFIIGKDATQEEFFHTFNSLHSAKKQIIISSDKPPKDMEILEDRIRSRFEWGLIAD 272 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + DYE R +ILK ++E +INE+V+ ++A + ++ REL+G+ N+++ + Sbjct: 273 ISSPDYETRVAILKK-----KEEMDGYDINEDVIKYIATNIKSNIRELEGSLNKVMAFAN 327 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T E+A+++L +++ + K + E I MVA+HY+I+ +++ N+R +V PR Sbjct: 328 LEKREVTVELAEQVLKDIISPDQQKIITPEYIISMVAEHYDITIDEIKGNKRNSKIVIPR 387 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+AMYL + M +G+ G+RDHTT++H K+E L+T T+K +E+L + I+ Sbjct: 388 QIAMYLCREMIDIPLKSVGKCLGNRDHTTIMHGCEKIEHELQTSDTMKNTIEVLMKKIN 446 >gi|312193898|ref|YP_004013959.1| chromosomal replication initiator protein DnaA [Frankia sp. EuI1c] gi|311225234|gb|ADP78089.1| chromosomal replication initiator protein DnaA [Frankia sp. EuI1c] Length = 512 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 139/495 (28%), Positives = 232/495 (46%), Gaps = 42/495 (8%) Query: 34 NCESIFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + ++ + + + + +W + + ++ + L+ P F K + +R Sbjct: 25 DLHEVWRQAVAGVADGTLSAQQ-RAWLRLTRPLGLVQDTALLAAPNEFTKDLLDSRLRPF 83 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSV-------------------------EKTASSPS 127 ++ + R V + V + P + SP Sbjct: 84 LSTALTAAYGREIRVAVTVEHLPDPEPMTGPMVLPQAALSGTGSSGSGDADDDGRVDSPL 143 Query: 128 ITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 PI + + P + L+ R+VF TF+ G SNR A+ ++AE Sbjct: 144 DAPTPPIQRVATGLGRDPEPRPSEP---ARLNPRYVFETFVIGDSNRFPHAASVAVAEAP 200 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 + Y NPLFI+ GLGKTHLL AI + + K P+ +V Y++ E F F ++IRD Sbjct: 201 AKAY-----NPLFIYGDSGLGKTHLLHAIGHYTKKLYPDAQVKYVSTEEFTNDFINSIRD 255 Query: 248 NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELE 306 + + R+ID+LL+DD+QFL+ K Q EF H N L D+ KQ+V ++DR P +L Sbjct: 256 DRQQAFQRRYRDIDVLLVDDIQFLENKERTQEEFFHTFNVLHDTEKQLVISSDRSPRQLS 315 Query: 307 SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT 366 +L+ R+RSR + G+ + D E R +IL + AI + L + +VL ++A + Sbjct: 316 ALEDRLRSRFEWGLITDVTPPDLETRIAILSKKAAIER-----LPVPPDVLEYIATHIER 370 Query: 367 SGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 + REL+GA ++ S + +A+ +L L+ ++ I A ++ +S Sbjct: 371 NIRELEGALIRVAAFASLNKSHVDRTLAEIVLRDLIPDATNTEITATSIMNATASYFGVS 430 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 DL R R +V RQ+AMYL + +T S P+IG+ FG RDHTTV+HA RK+ ++ Sbjct: 431 MEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQHFGGRDHTTVMHANRKIRGLMAE 490 Query: 486 DITLKKEVELLKRLI 500 + +V L I Sbjct: 491 RRAIYNQVTELTNRI 505 >gi|1353854|gb|AAC15822.1| DnaA [Prochlorococcus marinus] Length = 461 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 252/471 (53%), Gaps = 22/471 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E+ + V S LK + Y +W + +F + + L P +F AW+KN Y +TI Sbjct: 2 LEASWEKVQSSLKQNLSKPSYETWIRPTEFSGFKNGELTLIAPNSFSSAWLKNNYSQTIQ 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT--KLSPINTNISKSPIILGKQTISP 152 + +E V + V++ A S E +S+P + SP + + S S + L K+T+ Sbjct: 62 ETAEEIFGEPVTVHVKVKANAESSDEHYSSAPITPPLEASPGSVDSSGSSLRLSKKTLPL 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGKTHL Sbjct: 122 -----LNLRYVFNRFVVGPNSRMAHAAAMAVAESPGR-----EFNPLFICGGVGLGKTHL 171 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI + ++ P +V Y++ E F AIR + +D R DL+L+DD+QF++ Sbjct: 172 MQAIGHYRLEIDPGAKVSYVSTETFTNDLILAIRQDRMQAFRDRYRAADLILVDDIQFIE 231 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D+ Q+V A+DRPPS++ L R+ SR G+ + D E Sbjct: 232 GKEYTQEEFFHTFNALHDAGSQIVLASDRPPSQIPRLQERLMSRFSMGLIADVQAPDLET 291 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R +IL+ + E ++ + +++ +A T++ REL+GA + + FA I Sbjct: 292 RMAILQK-----KAEHERVGLPRDLIQFIAGRFTSNIRELEGALTRAIA---FASITGLP 343 Query: 392 IADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + ++ ++ G+ ++ + + VA+ + ++ +++ S R R V + RQV MYL + Sbjct: 344 MTVDSIAPMLDPNGQGVEVTPKQVLDKVAEVFKVTPDEMRSASRRRPVSQARQVGMYLMR 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG +DHTTV++A+ +VEK L +D + +V+ ++ L+ Sbjct: 404 QGTNLSLPRIGDTFGGKDHTTVMYAIEQVEKKLSSDPQIASQVQKIRDLLQ 454 >gi|296134505|ref|YP_003641747.1| chromosomal replication initiator protein DnaA [Thiomonas intermedia K12] gi|295794627|gb|ADG29417.1| chromosomal replication initiator protein DnaA [Thiomonas intermedia K12] Length = 484 Score = 445 bits (1144), Expect = e-122, Method: Composition-based stats. Identities = 147/494 (29%), Positives = 234/494 (47%), Gaps = 36/494 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLK--FHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E + ++L + +A+W + L S N L VP F W++++Y Sbjct: 1 MTQEQSWQQCCAQLATVIPDQQFAAWIKPLSSPHWSEDGNTAILHVPNRFKLDWLRSQYG 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSV---------------------EKTASSPSIT 129 IT+ R VE +V+ + + + S Sbjct: 61 ARITESLSAIVGRPVQVEFIVQKASARAAMHHSGALGLQSGSGSSSTSGSAQATHSADHA 120 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 + S + S L+ F T + G +N++A AA +AE Sbjct: 121 TPQQLAGPDGVSNAARDAAEADALERSRLNPMLSFETLVTGKANQLARAAAIQVAENPGR 180 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLFI+ VGLGKTHL+ A+ NA + +QP R+ YL AE F+ A + Sbjct: 181 SY-----NPLFIYGGVGLGKTHLMHAVGNALLAQQPGARIRYLQAEQFVSEVVRAYQRKA 235 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 K ++DLLLIDD+QF GK Q EF + +L+ Q++ +D P EL + Sbjct: 236 FEEFKRYYHSLDLLLIDDVQFFAGKDKTQEEFFYAFEALITKRSQIILTSDTYPKELREM 295 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 D R+ SR G++V + + EMR +IL + + EEV VA+ V ++ Sbjct: 296 DQRLVSRFDSGLTVAIEPPELEMRVAILLRKADAELAH-----LPEEVAFFVAKNVRSNV 350 Query: 369 RELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA +++ F ++ +A E L L++ +++ +E+IQ+ VA Y I Sbjct: 351 RELEGALRKILAYARFSGQDVSIGLAKEALKDLLSLQ-NRQVSVENIQKTVADFYKIKVA 409 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+ S +R ++ RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ + Sbjct: 410 DMYSKKRPASIARPRQIAMYLAKELTHKSLPEIGELFGGRDHTTVLHAVRKIGQERIKLQ 469 Query: 488 TLKKEVELLKRLIS 501 L +++ +L++ + Sbjct: 470 ELNQQLHVLEQTLK 483 >gi|260588817|ref|ZP_05854730.1| DNA replication initiator protein, ATPase [Blautia hansenii DSM 20583] gi|260540596|gb|EEX21165.1| DNA replication initiator protein, ATPase [Blautia hansenii DSM 20583] Length = 456 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 137/482 (28%), Positives = 264/482 (54%), Gaps = 40/482 (8%) Query: 31 LEVNC-ESIFTIVSS--RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPT-NFLKAWIK 86 ++++ + ++ + + ++++ V + +W + L+ + V N+V + V + +I Sbjct: 1 MKMHIIQEKWSDILNMIKIEHDVSDVSFNAWLEPLEVYKVEGNVVTIIVTNGSMALDYIN 60 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 +YL + E + + + V +++ P +N NI K+ Sbjct: 61 KKYLLPLKVSIAETIGQ----DFEISLVLPEDIKEEFKEPPTAAPVSLNENIEKA----- 111 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 L+ R+ F TF+ G++N++A A+ ++AE Y NPLFI+ VG Sbjct: 112 ----------NLNPRYTFDTFVVGNNNKMAHAASLAVAESPGEAY-----NPLFIYGGVG 156 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLL 263 LGKTHL+ +IA+ +++ P+ +V+Y+T+EYF +IR+ ++ RNID+L Sbjct: 157 LGKTHLMHSIAHFVLQKNPSAKVLYVTSEYFTNELIDSIRNGNNTTMSKFREKYRNIDVL 216 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF+ GK Q EF H N+L + KQ+V ++D+PP ++E L+ R+RSR + G+ V Sbjct: 217 LIDDIQFIIGKESTQEEFFHTFNALHGAKKQIVISSDKPPKDMEILEDRLRSRFEWGLIV 276 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + DYE R +IL+ ++E I++EV+ ++A+ V ++ REL+G+ N+++ Sbjct: 277 DISSPDYETRMAILRK-----KEELDGYKIDDEVIEYIAKNVKSNIRELEGSLNKIMAYA 331 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + + +A+++L +++ + + + E I +VA+H+++ +DL N+R +V P Sbjct: 332 NLEKSEINLALAEKVLKDIISPNQKRIITPELIIEVVAEHFDLQPSDLTGNKRNAKIVFP 391 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT--LKKEVELLKRL 499 RQ+ MYL + MT + IG+ G RDHTT+++ + K+E L ++ +++LK+ Sbjct: 392 RQIVMYLCRSMTEVTLKNIGKVLGGRDHTTIMNGIDKIEAELNGSNAAPTQEIIDILKKK 451 Query: 500 IS 501 I+ Sbjct: 452 IN 453 >gi|209542189|ref|YP_002274418.1| chromosomal replication initiator protein DnaA [Gluconacetobacter diazotrophicus PAl 5] gi|209529866|gb|ACI49803.1| chromosomal replication initiator protein DnaA [Gluconacetobacter diazotrophicus PAl 5] Length = 477 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 170/464 (36%), Positives = 276/464 (59%), Gaps = 15/464 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + SRL+ +VG Y +W +++ V + + L++PT FL+ W++ +Y + ++ L+ Sbjct: 25 WSRICSRLQAEVGEVEYRTWLKQISIGPVDGDEITLNLPTRFLRDWVRTQYGDRLSALWN 84 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E I+ VE+ V + + + T + + +PL Sbjct: 85 AELPAIRRVELQVGRPEGAADGAAPAPADPPVAATPATAAIVGDERVPENRND--LAAPL 142 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F TF+ G N A A+ +AE S + NPLF++ VGLGKTHL+ AI + Sbjct: 143 DPRFTFDTFVVGKPNEFAYACARRVAERPS----SPGFNPLFLYGGVGLGKTHLMHAIGS 198 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQ 277 + R + V Y++AE FM+RF +AIR + K+ LR++D+L+IDD+QFL GK Q Sbjct: 199 E-LVRGGAVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVDVLMIDDLQFLIGKDNTQ 257 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ + +E+R SIL+ Sbjct: 258 EEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGMVADIHATTFELRISILE 317 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADEL 396 ++ A S + + +VL +A +T++ REL+GA N+L+ + F +T E ++ Sbjct: 318 SKAAAS-----GVAVPAKVLEFLAHKITSNVRELEGALNRLIAHANLFGRPVTLEATQDV 372 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L ++ +++ IE+IQR V++H+NI D+ S RR R V RPRQVAMYL+K +T RS Sbjct: 373 LHDILK-AHDRRVTIEEIQRKVSEHWNIRLTDMSSARRARAVARPRQVAMYLAKQLTSRS 431 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PEIGR+FG+RDHTTV+HAV +V +++E D ++VELL+R++ Sbjct: 432 LPEIGRKFGNRDHTTVMHAVARVTELMERDTAFAEDVELLRRML 475 >gi|291612473|ref|YP_003522630.1| chromosomal replication initiator protein DnaA [Sideroxydans lithotrophicus ES-1] gi|291582585|gb|ADE10243.1| chromosomal replication initiator protein DnaA [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 160/470 (34%), Positives = 241/470 (51%), Gaps = 27/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +S+ S K Q+ Y SW + L F + + L+ P +F ++ R+L Sbjct: 1 MSSQSLSGSCLSFFKEQLPLQQYNSWIKPLIF-EIDGEKLVLTAPNSFTLRIVQERFLPE 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I+K S +E V EK S S+ + P + + Sbjct: 60 ISKRALPFFSSPPKIEFRV--------EKRGSKVSMDHTKDSTSTKPPLPAAKTAKNQN- 110 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+S VF TF+ G +N++A AA +AE Y NPLFI+ VGLGKTHL Sbjct: 111 ----KLNSALVFDTFVTGKANQLAHAAAIQVAETPGVAY-----NPLFIYGGVGLGKTHL 161 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 LQAI N K+ P R+ Y+ A ++ A + K ++DLLLIDD+QF+ Sbjct: 162 LQAIGNLVSKKNPQARICYIHATNYISGVVRAFQTKNFDEFKQFYNSLDLLLIDDIQFIA 221 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + LNSL+D+ KQVV D P E+ ++PR+ SR G++V + EM Sbjct: 222 DKPGTQQEFFYTLNSLIDTNKQVVITCDTFPKEITGIEPRLTSRFTCGLTVAIEPPGLEM 281 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + A + I+E+V +A+ V ++ REL+GA N++ F I++ Sbjct: 282 RVAILLQKSATNGS-----PISEDVAFFIAKHVRSNIRELEGALNRIEAYARFHKRIISI 336 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L L+ K++ +E+IQ+ VA Y I DLLS +R R + RPRQ+AM L++ Sbjct: 337 ELAKEALKDLLAAQ-NKQVSLENIQKTVADFYRIKIVDLLSKKRTRIIARPRQIAMCLAR 395 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S PEIG FG RDH+TVLHA + +E + +D L + LL + + Sbjct: 396 ELTQLSLPEIGNAFGGRDHSTVLHACKTIESLRNSDSALNADFNLLNQTL 445 >gi|33240018|ref|NP_874960.1| chromosomal replication initiation protein [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|37154736|sp|Q51896|DNAA_PROMA RecName: Full=Chromosomal replication initiator protein DnaA gi|33237544|gb|AAP99612.1| ATPase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 461 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 252/471 (53%), Gaps = 22/471 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E+ + V S LK + Y +W + +F + + L P +F AW+KN Y +TI Sbjct: 2 LEASWEKVQSSLKQNLSKPSYETWIRPTEFSGFKNGELTLIAPNSFSSAWLKNNYSQTIQ 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT--KLSPINTNISKSPIILGKQTISP 152 + +E V + V++ A S E +S+P + SP + + S S + L K+T+ Sbjct: 62 ETAEEIFGEPVTVHVKVKANAESSDEHYSSAPITPPLEASPGSVDSSGSSLRLSKKTLPL 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGKTHL Sbjct: 122 -----LNLRYVFNRFVVGPNSRMAHAAAMAVAESPGR-----EFNPLFICGGVGLGKTHL 171 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI + ++ P +V Y++ E F AIR + +D R DL+L+DD+QF++ Sbjct: 172 MQAIGHYRLEIDPGAKVSYVSTETFTNDLILAIRQDRMQAFRDRYRAADLILVDDIQFIE 231 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D+ Q+V A+DRPPS++ L R+ SR G+ + D E Sbjct: 232 GKEYTQEEFFHTFNALHDAGSQIVLASDRPPSQIPRLQERLMSRFSMGLIADVQAPDLET 291 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R +IL+ + E ++ + +++ +A T++ REL+GA + + FA I Sbjct: 292 RMAILQK-----KAEQERVGLPRDLIQFIAGRFTSNIRELEGALTRAIA---FASITGLP 343 Query: 392 IADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + ++ ++ G+ ++ + + VA+ + ++ +++ S R R V + RQV MYL + Sbjct: 344 MTVDSIAPMLDPNGQGVEVTPKQVLDKVAEVFKVTPDEMRSASRRRPVSQARQVGMYLMR 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG +DHTTV++A+ +VEK L +D + +V+ ++ L+ Sbjct: 404 QGTNLSLPRIGDTFGGKDHTTVMYAIEQVEKKLSSDPQIASQVQKIRDLLQ 454 >gi|330752438|emb|CBL87388.1| chromosomal replication initiation protein [uncultured Flavobacteria bacterium] Length = 475 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 139/484 (28%), Positives = 243/484 (50%), Gaps = 23/484 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E+++ S +K+ + P Y +WF+ + + + + VP+ F W++ Y+ Sbjct: 1 MTNTAETVWRNCMSFIKDNIQPQAYKTWFEPISAIKLTDQSLSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVR-----------SVALPSVEKTASSPSITKLSPINTNIS 139 + + +E + +++ + +PS ++A + N N Sbjct: 61 KILKVALTKELGNEAKLVYIIKMENTYGNKQPFTEKIPSTNRSAIKSQRADIPLKNKNPE 120 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ + F F+EG SNR+A A ++A NPL Sbjct: 121 LKNPFVIPGIRNVKIESQLNPIYTFENFLEGDSNRLARNAGIAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P V+Y++AE F ++ +++ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFTQQYIESVKKNNRNDFIHFYQI 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 ID+L+IDD+QFL GK Q F H+ N L + KQV+ +D+ P +++ ++ R+ SR + Sbjct: 237 IDVLIIDDVQFLSGKSGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIEQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L D+E R SI+KN+L E ++E+V+ +VA+ + T+ REL+GA L Sbjct: 297 GLSAELQKPDFETRVSIVKNKLYRDGVE-----MSEDVIEYVAKNIKTNVRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + + SF +T +A E++ V +++ I+ IQ++V+ ++ + L S R R Sbjct: 352 IAQSSFNKKEITLGLAKEIVEKFVKN-TKREVSIDYIQKVVSDYFQMDVETLQSKTRKRH 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K VE L Sbjct: 411 IVQARQLAMFFAKKFTKASLASIGSQIGKRDHATVLHACKTVDNLSSTDKQFRKYVEDLT 470 Query: 498 RLIS 501 + +S Sbjct: 471 KKLS 474 >gi|331083519|ref|ZP_08332631.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 6_1_63FAA] gi|330404212|gb|EGG83760.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 6_1_63FAA] Length = 454 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 137/477 (28%), Positives = 260/477 (54%), Gaps = 39/477 (8%) Query: 35 CESIFTIVSS--RLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPT-NFLKAWIKNRYLE 91 + ++ + + ++++ V + +W + L+ + V N+V + V + +I +YL Sbjct: 4 IQEKWSDILNMIKIEHDVSDVSFNAWLEPLEVYKVEGNVVTIIVTNGSMALDYINKKYLL 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + E + + + V +++ P +N NI K+ Sbjct: 64 PLKVSIAETIGQ----DFEISLVLPEDIKEEFKEPPAAAPVSLNENIEKA---------- 109 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ R+ F TF+ G++N++A A+ ++AE Y NPLFI+ VGLGKTH Sbjct: 110 -----NLNPRYTFDTFVVGNNNKMAHAASLAVAESPGEAY-----NPLFIYGGVGLGKTH 159 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDM 268 L+ +IA+ +++ P+ +V+Y+T+EYF +IR+ ++ RNID+LLIDD+ Sbjct: 160 LMHSIAHFVLQKNPSAKVLYVTSEYFTNELIDSIRNGNNTTMSKFREKYRNIDVLLIDDI 219 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H N+L + KQ+V ++D+PP ++E L+ R+RSR + G+ V + Sbjct: 220 QFIIGKESTQEEFFHTFNALHGAKKQIVISSDKPPKDMEILEDRLRSRFEWGLIVDISSP 279 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 DYE R +IL+ ++E I++EV+ ++A+ V ++ REL+G+ N+++ + Sbjct: 280 DYETRMAILRK-----KEELDGYKIDDEVIEYIAKNVKSNIRELEGSLNKIMAYANLEKS 334 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+++L +++ + + + E I +VA+H+++ +DL N+R +V PRQ+ M Sbjct: 335 EINLALAEKVLKDIISPNQKRIITPELIIEVVAEHFDLQPSDLTGNKRNAKIVFPRQIVM 394 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE--TDITLKKEVELLKRLIS 501 YL + MT + IG+ G RDHTT+++ + K+E L ++ +++LK+ I+ Sbjct: 395 YLCRSMTEVTLKNIGKVLGGRDHTTIMNGIDKIEAELNGPNAAPTQEIIDILKKKIN 451 >gi|315925611|ref|ZP_07921821.1| DNA-directed DNA replication initiator protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621152|gb|EFV01123.1| DNA-directed DNA replication initiator protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 468 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 239/474 (50%), Gaps = 22/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++ + Q+ + +WF +K N V+L V +F +A ++ RY Sbjct: 12 VDDSLNILWQQALELIAEQLTEVSFRTWFPSVKPILYRDNFVYLLVENSFNQAVMQERYE 71 Query: 91 ETITKLFQEEH-SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + ++ +P AS+P T +T Sbjct: 72 TVTNTVLSFLTKNDHLKAVFILNEDDIPKETAPASAPLETAEERTDT--------PDANV 123 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 G+ +++++ F F+ G +NR A A +++E S Y NPLFI+ VGLGK Sbjct: 124 KPAHTGTGINAKYTFERFVIGENNRFAHAACVAVSEAPSERY-----NPLFIYGGVGLGK 178 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI N + P+ +V+Y++ E F F AI++ L+ ++ RN+D+LLIDD+Q Sbjct: 179 THLMQAIGNYILTYTPDKKVIYVSCETFTNEFIDAIQNKNNLSFRNRYRNVDILLIDDIQ 238 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK Q EF H N+L D KQ+V ++DRPP E+ L R+RSR + G+ + + Sbjct: 239 FLSGKEGTQEEFFHTFNALHDENKQIVISSDRPPREIPKLAERLRSRFEMGLITDISTPN 298 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 +E R +IL+ + E +I ++V+ +A + ++ REL+GA +V Sbjct: 299 FETRMAILRK-----KAESNAEDIPDDVMSFIADNIHSNIRELEGALTTVVAYSKLHGET 353 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 ++ + A E L+ L + + I+ + AK++N + D+ +R + + PRQVAMY Sbjct: 354 ISLDFAREALADLF-VSRQHDINADYIKEITAKYFNTTIEDMNGKKRTKAITTPRQVAMY 412 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + MT S P IG FG RDH+TV+HA +K+ + ++ + K V ++ I Sbjct: 413 LCREMTNMSLPAIGEAFGGRDHSTVIHAYQKISENIDANTDFKNLVLRIQSDIQ 466 >gi|182677005|ref|YP_001831151.1| chromosomal replication initiation protein [Beijerinckia indica subsp. indica ATCC 9039] gi|182632888|gb|ACB93662.1| chromosomal replication initiator protein DnaA [Beijerinckia indica subsp. indica ATCC 9039] Length = 510 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 221/500 (44%), Positives = 312/500 (62%), Gaps = 21/500 (4%) Query: 20 KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTN 79 + N + L VN + + + RL+ ++G DV+ASWF RL+ V LSVPT Sbjct: 15 EDDNETGRRVNLGVNKDEAWERICRRLRAELGEDVFASWFGRLELDQVADGTAFLSVPTK 74 Query: 80 FLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS 139 FLK+WI++ Y + I + +E + + I VR + A + Sbjct: 75 FLKSWIQSHYTDKILAILADEFGNAKRISIGVRPTSRVGRSFPADAERDNSPENAEPAAR 134 Query: 140 KSPIILGKQ----------------TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSI 183 + +G + + GSPLD R F+ F+ G SN++A AA+ I Sbjct: 135 PARSPVGAEVKFFTGPDKKTVREISDAEALNGSPLDRRLSFANFLVGRSNQLAFAAAKGI 194 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 A D + NPL++HASVGLGKTHLLQAIA+ ++ + RV+YLTAE FM+ F + Sbjct: 195 AAAD--PNDPLLSNPLYLHASVGLGKTHLLQAIAHDAMIMK--RRVIYLTAEKFMYGFVA 250 Query: 244 AIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 A++ A+ K+ LR ID+L+IDD+QFLQGK IQ EFCH LN+L+D+ +Q+V AADRPP+ Sbjct: 251 ALKAQTAIAFKEKLRTIDILVIDDVQFLQGKSIQQEFCHTLNALIDAGRQIVIAADRPPA 310 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +LESLD R+RSRL GG+ V +G D +R IL+ R+ ++ P ++ + V+ +VA Sbjct: 311 DLESLDERVRSRLAGGLCVEMGALDEALRIKILETRIGAAKLVHPYFDVPQPVIAYVASV 370 Query: 364 VTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + T+GR+LDGA N+L+ S + LT EIA+ + LV T E K+++IE+IQ++VA H+ Sbjct: 371 IQTNGRDLDGAVNRLLAHASLTSVPLTIEIAETAIRDLVRTKEPKRVKIEEIQKLVASHF 430 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+SR D+LS+RR VVRPRQ+AMYLSKIMT RS PEIGRRFG RDHTTVLHAVRK+E + Sbjct: 431 NVSRADILSSRRTANVVRPRQIAMYLSKIMTLRSLPEIGRRFGGRDHTTVLHAVRKIENL 490 Query: 483 LETDITLKKEVELLKRLISE 502 TD L +E+ELLKR++ E Sbjct: 491 ASTDNHLSEELELLKRMLME 510 >gi|149925376|ref|ZP_01913640.1| chromosomal replication initiation protein [Limnobacter sp. MED105] gi|149825493|gb|EDM84701.1| chromosomal replication initiation protein [Limnobacter sp. MED105] Length = 463 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 136/472 (28%), Positives = 232/472 (49%), Gaps = 16/472 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLET 92 + + L+ ++ W + L + LS P F W+ N Y Sbjct: 2 IDQFWNHCVEALRKEIPAQQIKLWIEPLTVVEFDEDTASLSMAAPNRFKLDWVLNNYGGR 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +L E ++ V + + + + + K + + + Sbjct: 62 FNELATEFFGCDMAIQWQVAAKQASPLVAPPPAAAKNNSEAVTQGAPKVAAVKRDEIAAT 121 Query: 153 VFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V+ S L+ FS F+ G +N++A AA+ +A Y NPLF++ VGLGKTH Sbjct: 122 VYERSRLNRDLCFSNFVSGRANQLARAAAEQVASNPGVSY-----NPLFLYGGVGLGKTH 176 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ +I N +++ PN ++ Y+ AE ++ A + K S ++DLLLIDD+QF Sbjct: 177 LIHSIGNRLLEQNPNTQIRYIHAEQYVSDVVKAYQKKAFEEFKRSYYSLDLLLIDDIQFF 236 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + L+ + KQ++ +D P +++ +D R+ SR G++V + + E Sbjct: 237 GGKSRTQEEFFYAFEQLIAAKKQIIITSDTYPKDIQGMDDRLISRFNSGLTVAIEPPELE 296 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 MR +IL + + E K+ +E+V VA+ + ++ REL+GA +++ SF +T Sbjct: 297 MRVAIL-----LKKAEQQKIMFSEDVAFFVAKHMRSNIRELEGALRRIMAFASFHNKPVT 351 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++ E L +++ ++ +E IQ+ VA +Y I D+ S RR +V PRQVAMYL+ Sbjct: 352 MDLVREALRDMISVHHG-QVSVESIQKTVADYYKIKVADMFSKRRQAQIVLPRQVAMYLA 410 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S+ EIG FG RDHTTVLHAV K+ ++ L + +L + + Sbjct: 411 KELTEKSYVEIGELFGGRDHTTVLHAVNKISELRNQSSELNHALHVLDQTLK 462 >gi|282856283|ref|ZP_06265564.1| chromosomal replication initiator protein DnaA [Pyramidobacter piscolens W5455] gi|282585860|gb|EFB91147.1| chromosomal replication initiator protein DnaA [Pyramidobacter piscolens W5455] Length = 438 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 240/469 (51%), Gaps = 35/469 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N E I+ + + W + + + + L +F+ +K+ +L T+ Sbjct: 3 NAEEIWEQILEGAAPLLPNQTVDIWLKSCSPLRMEDDRLVLDAGNSFVAKKVKDSFLATL 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + Q + + G++++ S + + Q SP+ Sbjct: 63 ESVMQRK-GKGSGIDLVYDS----------------------KPVGAEEALPSPQPHSPI 99 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F++F+ G SNR+A A+ ++AE Y NPLFI VGLGKTHL+ Sbjct: 100 GSNGLNRQYDFTSFVVGKSNRLAHAASLAVAESPGEAY-----NPLFIWGGVGLGKTHLM 154 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N + + N +V YL++E F +AI++ + R++D+LLIDD+QFL G Sbjct: 155 HAIGNYAQGKNGNTKVTYLSSEKFTNELITAIKNARTAEFRAKYRHVDILLIDDIQFLAG 214 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N L KQ+V ++DRPP EL ++ RI SR + G+ + DYE R Sbjct: 215 KESTQDEFFHTFNDLHTEHKQIVLSSDRPPKELGDIEDRIISRFEWGLVTDIQQPDYETR 274 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +ILK + E ++ +N++V+ +A + ++ REL+GA N+++ +F+ +T E Sbjct: 275 IAILKK-----KAEQRRIPVNDDVIGFLAENIPSNIRELEGALNRVIASANFSQEPITIE 329 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L ++ +G + + I +V+ + S D+ S RR V RQVAMY+ +I Sbjct: 330 NTQEWLKDVIGSGRRGLLTFQSIMDVVSSEFGFSPEDICSKRRTAEVALARQVAMYMCRI 389 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S +I + FG +DHTTVLHA++K+E +++ D +KK VE + + + Sbjct: 390 HTESSLQQIAKDFGKKDHTTVLHALKKIEMLMKEDARVKKIVENIDKKL 438 >gi|315223902|ref|ZP_07865748.1| DNA-directed DNA replication initiator protein [Capnocytophaga ochracea F0287] gi|314946131|gb|EFS98134.1| DNA-directed DNA replication initiator protein [Capnocytophaga ochracea F0287] Length = 473 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 139/483 (28%), Positives = 235/483 (48%), Gaps = 21/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ E +++ +K+ + + +WF + + N + + VP+ F W++ Y+ Sbjct: 1 MKEAAEKVWSKCLEFIKDNITEQPFNTWFAPIVPVELESNTLKIKVPSKFFCEWLEENYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +V + + + P + K + +K P + I Sbjct: 61 SLLKSAMTFTLGVNSRLVYIVDTPLTKEQLPSTNRPELAKQTLTLATETKDPGLKNPFVI 120 Query: 151 SPV----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ F F+EG+SNR+A +A ++A NPLFI VG Sbjct: 121 PGIREITVDPQLNLHQNFDNFVEGASNRLARSAGMAVANKPG----GTAFNPLFIFGGVG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA-----IRDNCALNLKDSLRNID 261 LGKTHL AI ++ P +V+Y++AE F +F SA N + + ID Sbjct: 177 LGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFIHFYQLID 236 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L++DD+QFL GK Q F H+ N L + KQV+ +D+ P +L ++ R+ SR + G+ Sbjct: 237 VLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLLSRFKWGL 296 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S L DYE R+ IL+N+ E I ++++ ++A + T+ REL+G N L+ Sbjct: 297 SAELQTPDYETRYKILENKFYNDGAE-----IGDDIIAYLAENIRTNVRELEGVSNSLIA 351 Query: 381 RHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + +F + E+A ++ V + I+ IQ+++A ++ + L S R R VV Sbjct: 352 QAAFNRKEYSIELAQSIIDKSVKNNRN-DLTIDHIQQIIADYFGLDIESLHSKTRKRNVV 410 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+AM+ SK T S IG + G RDH TVLHA + VE ++ETD KK V L+ Sbjct: 411 QARQLAMFFSKKYTKNSLSTIGSQIGQRDHATVLHACKTVENLIETDRAFKKYVSDLETK 470 Query: 500 ISE 502 S+ Sbjct: 471 FSD 473 >gi|159903109|ref|YP_001550453.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9211] gi|226735832|sp|A9BEI9|DNAA_PROM4 RecName: Full=Chromosomal replication initiator protein DnaA gi|159888285|gb|ABX08499.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9211] Length = 454 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 232/471 (49%), Gaps = 27/471 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + ++ V L+ + Y +W F + + L +F AW+ N Y Sbjct: 2 LTGNEVWVKVQQSLRGNLSKPSYETWISPTTFCNFERGELTLLAANDFSSAWLTNNYSRA 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + V + V+ S SI P P K P Sbjct: 62 IEEAAEAVIGESVKVIVKVKDDIQKSEASLPPRISIPAFHP--------PGDSKKTDSKP 113 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF+ F+ G ++R+A AA S+AE + NPLFI VGLGKTHL Sbjct: 114 A----LNLRYVFNRFVVGPNSRIAHAAAMSVAEAPAK-----EFNPLFICGGVGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAI + ++ P +V Y++ E F AIR + + +D R DL+L+DD+QFL+ Sbjct: 165 MQAIGHYRLEIDPGAKVSYVSTETFTNDLIVAIRQDGMQSFRDKYRAADLILVDDIQFLE 224 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L +S Q+V A+DRPP+++ L R+ SR G+ + D E Sbjct: 225 GKEYTQEEFFHTFNALHESGTQIVLASDRPPNQIPRLQERLISRFSMGLIADVQAPDLET 284 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAE 391 R +IL+ + E ++ + +++ +A T + REL+GA + V FA I Sbjct: 285 RMAILQK-----KAEQDRVRLPRDLIQFIAGRFTLNIRELEGALTRAVA---FASITGLP 336 Query: 392 IADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + E ++ ++ G+ ++ + + V++ + ++ +++ S+ R R V + RQV MYL + Sbjct: 337 MTVESIAPMLDPNGQGVEVTPKQVMEKVSEVFAVTSDEMCSSSRRRPVSQARQVGMYLMR 396 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG +DHTTV++A+ ++EK L TD L +V+ +K L+ Sbjct: 397 HGTDLSLPRIGEVFGGKDHTTVMYAIEQIEKKLSTDPQLASQVQKVKDLLQ 447 >gi|167951344|ref|ZP_02538418.1| chromosomal replication initiator protein DnaA [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 424 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 144/446 (32%), Positives = 238/446 (53%), Gaps = 26/446 (5%) Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG-VEILVRSVALP 117 + L+ + L P F+ W++N Y++ I E + VEI++ + P Sbjct: 1 IRPLQAEEST-TKIRLLAPNTFVLDWVRNHYIKIINSYLDEICKDERPIVEIIIGTRKKP 59 Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 T+L + + K S L+ F F +F+EG SN++A Sbjct: 60 -----------TQLPDRSVKKQATIERSDKLESVSAIESNLNRSFTFESFVEGKSNQLAR 108 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 A+ IA Y NPLFI+ VGLGKTHL+ A+ NA + PN +V+YL +E F Sbjct: 109 AASMQIASNPGKAY-----NPLFIYGGVGLGKTHLMHAVGNAILSENPNAKVLYLHSERF 163 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 + A++ N K R+++ LLIDD+QF GK Q EF H N+L +S +Q++ Sbjct: 164 VADMVRALQHNKIDEFKKRYRSVNALLIDDIQFFAGKERSQEEFFHTFNALFESQQQIIL 223 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 ++DR P E++ L+ R++SR G++V + D E R +ILK S+ + + +EV Sbjct: 224 SSDRFPKEVKGLEERLKSRFGWGLTVAIEPPDLETRVAILK-----SKALQLNVELGDEV 278 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQ 415 + + + ++ REL+GA ++V +F ++ E + L ++ K++ IE+IQ Sbjct: 279 AFFIGKKIRSNIRELEGALRRVVANSTFTGKEISIEFSKNALRDMLAAQ-AKQVTIENIQ 337 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + V +++ I +DLLS +R R++ RPRQ+AM L+K +T S PEIG FG RDHTTV+HA Sbjct: 338 KTVCEYFQIRTSDLLSAKRSRSIARPRQIAMTLAKELTNHSLPEIGSAFGGRDHTTVIHA 397 Query: 476 VRKVEKMLETDITLKKEVELLKRLIS 501 +K+ ++ ++D + ++ L R +S Sbjct: 398 NKKINELRDSDPRIAEDYSNLLRTLS 423 >gi|325265442|ref|ZP_08132165.1| DNA replication initiator protein, ATPase [Clostridium sp. D5] gi|324029300|gb|EGB90592.1| DNA replication initiator protein, ATPase [Clostridium sp. D5] Length = 456 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 131/481 (27%), Positives = 248/481 (51%), Gaps = 37/481 (7%) Query: 31 LEVNCESIFTIVSSRLKNQV--GPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 + + E+ + + +++K++ Y +W L + V + V++ V I+ + Sbjct: 1 MNIVVEN-WEQILNKMKDEYCSSNISYNTWIAPLTVYEVTDDTVYILVKLKASLEHIEEK 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 YL F+ + + G E + V +V ++ K K+ Sbjct: 60 YLLP----FKVCIAEVTGTEFEISFVTEDNVIIQEKKENVIK---------------NKK 100 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + + + L++++ F TF+ GS+N A A+ ++AE Y NPLFI+ VGLG Sbjct: 101 SNALFENANLNAKYTFDTFVVGSNNNFAHAASLAVAESPGEIY-----NPLFIYGGVGLG 155 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC------ALNLKDSLRNIDL 262 KTHL+ ++A+ ++ P+ +V+Y+T+E F +++ ++ RN D+ Sbjct: 156 KTHLMHSVAHFILENDPSKKVLYVTSETFTNELIDSLKIGKNGNELAMTTFREKYRNNDV 215 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ Sbjct: 216 LLIDDIQFIIGKESTQEEFFHTFNHLHVSGKQIIISSDKPPKDIETLEARLRTRFEWGLI 275 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + DYE R +IL+ + + E + +I +EVL ++A + ++ REL+G+ N+L+ Sbjct: 276 ADISSPDYETRMAILRKKEELDGLE--RYHIPDEVLQYIANNIKSNIRELEGSLNKLIAL 333 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + + +A E L +++ + + + E + +V++H+NI ++L +R +V Sbjct: 334 SNLEKKPIDIPLAAEALKDMISPDDNRTITPELVIDVVSEHFNIPVSELKGKKRNAEIVL 393 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+ MYL + MT + IG G +DH +V H V+K+ + D L V ++K+ I Sbjct: 394 PRQIVMYLCRTMTDTALKTIGIILGGKDHASVSHGVKKIAHDITVDEALNNTVNIIKKKI 453 Query: 501 S 501 + Sbjct: 454 N 454 >gi|146295086|ref|YP_001178857.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408662|gb|ABP65666.1| chromosomal replication initiator protein DnaA [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 454 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 149/480 (31%), Positives = 250/480 (52%), Gaps = 39/480 (8%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPD----VYASWFQRLKFHSVLHN-IVHLSVPTNFLKAW 84 ++ + ++ + +K ++ P Y +W + L N L +F + Sbjct: 1 MVDYDVNKVWEDIKEVIKKELNPSPTDISYNTWVETLVPICFDENDTFILKAFADFHRDI 60 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + NRY I ++ +S +++++ N I Sbjct: 61 VINRYSLLILNALRQLYSPHLSLKVIL----------------------PNEVEKYKKYI 98 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 KQ + L+ ++ F TF+ G++NR+A AA ++AE NPLFI+ Sbjct: 99 KQKQEEKVEVTTTLNPKYTFETFVVGNNNRLAHAAALAVAETP---PGEKTYNPLFIYGG 155 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+ AI + +K P+ +V+Y+T+E F +AIRD + RN+D+LL Sbjct: 156 VGLGKTHLMHAIGHHVLKLYPDTKVMYVTSEIFTNELIAAIRDEKTDEFRMKYRNVDVLL 215 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QFL GK Q EF H N+L ++ K+++ ++DRPP E+ +L+ R+RSR + G+ Sbjct: 216 IDDIQFLGGKERTQEEFFHTFNTLYEANKKIILSSDRPPKEINTLEDRLRSRFEWGLITD 275 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +IL + + + + +L +A + T+ REL+GA N+++ Sbjct: 276 IQPPDFETRIAILSKKCQLEGT-----PVPQHILEFIASKIETNIRELEGALNKILAYSK 330 Query: 384 FA---PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +T E+A++ L ++T K++ IEDIQ VA ++NI D S+RR R V Sbjct: 331 LMAPDKEITLELAEKALKEFIDTNTKKELTIEDIQAEVAGYFNIKLEDFKSSRRSRNVAF 390 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL++ +T S P+IG FG +DHTTVLHA K+++++ D ++ VE LK+ + Sbjct: 391 PRQIAMYLARELTNVSLPKIGEAFGGKDHTTVLHACEKIKELINKDTNIRNTVENLKKRL 450 >gi|149919113|ref|ZP_01907597.1| chromosomal replication initiator protein dnaA [Plesiocystis pacifica SIR-1] gi|149820043|gb|EDM79464.1| chromosomal replication initiator protein dnaA [Plesiocystis pacifica SIR-1] Length = 453 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 147/466 (31%), Positives = 247/466 (53%), Gaps = 25/466 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 I++ L+ ++ + W + ++ S+ + + L P FLK W + YL + Sbjct: 3 DIWSEALQGLEPRLDKQTFDMWLRPIRLASIEDDRLRLHAPNRFLKEWFETHYLALVLDE 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS--PVF 154 + R GVE+ + A P+ ASS T+I++SP T+ P Sbjct: 63 IEGRQGRRFGVELEIVEPAEPAKAPAASS--------TETSIAQSPAAQPTVTLRRGPEA 114 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L R+ F +FI+G+SN + + A + + R NPLFI+ VGLGKTHLL Sbjct: 115 PTGLHPRYRFDSFIKGASNEL-----AASAAMAASDAPGTRFNPLFIYGGVGLGKTHLLH 169 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQG 273 I + ++ P+LR+VYL+AE+FM F +A+R+N + R + D LLIDD+QF+ G Sbjct: 170 GIGHELHRKDPSLRIVYLSAEHFMNEFVTAVRNNQFDEFRARYRKDCDCLLIDDIQFIAG 229 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 + EF H+ N+L ++ KQ+V +DR P+++ ++ R+ SRL G+ + D E R Sbjct: 230 RDRTMDEFFHVFNALYEAGKQIVVTSDRVPADMPGMEARLTSRLNWGLVADVQPPDLETR 289 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +I++ ++ E + + EV + +A V ++ REL+GA ++ + + Sbjct: 290 IAIVQ-----AKAERDGMELPAEVCLTIAELVRSNVRELEGALLRVTAFAQLRGVAIDKA 344 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + +L + + IE +Q+ VA +Y++ +DL RR R + RPR VAMYL + Sbjct: 345 FVESVLGK--RRVDKTPITIEAVQKAVAGYYSVRISDLKGKRRHRGISRPRMVAMYLCRQ 402 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +T SFPEIG RFG +DH+TV++A +++ + E D L+ VE L+ Sbjct: 403 LTDSSFPEIGMRFGGKDHSTVINACKRIAALQEDDEELRGAVESLR 448 >gi|51473779|ref|YP_067536.1| chromosomal replication initiation protein [Rickettsia typhi str. Wilmington] gi|61212556|sp|Q68WD8|DNAA_RICTY RecName: Full=Chromosomal replication initiator protein DnaA gi|51460091|gb|AAU04054.1| chromosomal replication initiator protein DnaA [Rickettsia typhi str. Wilmington] Length = 463 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 175/470 (37%), Positives = 287/470 (61%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSYVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYAMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + V P +T S I+ + S + Sbjct: 74 LQLFQHYNNAIKSIEIITKEV--PGTTQTVIELPTKTFSNISNSALNSENTI-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE + + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDLRFTFDNFVVGAPNELAYAAARAVAESSGAVFES---NPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ + K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVINFLASKIVSNVRELEGALNKVIAHSNFTLKAITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSKI Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVANRYNIKLSDMYSSRRLREVARPRQIAMYLSKI 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKILQ 462 >gi|108802857|ref|YP_642794.1| chromosomal replication initiator protein DnaA [Rubrobacter xylanophilus DSM 9941] gi|108764100|gb|ABG02982.1| chromosomal replication initiator protein DnaA [Rubrobacter xylanophilus DSM 9941] Length = 450 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 142/473 (30%), Positives = 245/473 (51%), Gaps = 28/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ E ++ V R+ + WF+ + + + + +SVP F K +I++R+ Sbjct: 1 MQSRAEEVWNEVLDRVSEHINAPSLKVWFEGTRPVQLYEDGLEISVPNTFAKEYIESRFR 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + + I+ + +S S ++ +S Sbjct: 61 PLLEEALDGVLGQEETSIIVSVGGQGRRAGREETSAETGAESVLSARTPRS--------- 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L +++ F +F+ G+ NR A AA ++AE Y NPLFI+ VGLGKT Sbjct: 112 -------LKAKYTFDSFVIGAGNRFAHAAALAVAENPGVVY-----NPLFIYGGVGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL+A+ + + P +RV Y+T E F F +++RDN L + R D+LLIDD+QF Sbjct: 160 HLLRAVGHYVEDQDPTMRVRYVTCEQFTNDFINSMRDNAPLEFQKRYRENDVLLIDDIQF 219 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+ K Q F H N+L + KQ+V A+DR P L++L+ R+ SR + G+ + D Sbjct: 220 LENKVETQEAFFHTFNALYEENKQIVIASDRHPKYLQTLENRLVSRFEWGLVTDIQPPDL 279 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPIL 388 E R +IL+ + +L +++EVL +A V+T+ REL+GA +++ S + + Sbjct: 280 ETRIAILRK-----KAMMDRLEVDDEVLTFIASKVSTNIRELEGALVRILAYASLYGRQV 334 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A+E+L ++ + +++ IE IQ V +++ IS+ DL+ R + PRQVAMYL Sbjct: 335 TVALAEEVLRDILPDSDYREIPIELIQHEVCRYFGISKEDLVGTSRSKAFAYPRQVAMYL 394 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+ +T S P+IG+ FG RDH+TV+HA K+ ++ +D ++ + I Sbjct: 395 SRELTDESLPKIGKAFGGRDHSTVMHATNKIANLINSDRDTFNQIHEITYHIK 447 >gi|300213940|gb|ADJ78356.1| Chromosomal replication initiator protein dnaA [Lactobacillus salivarius CECT 5713] Length = 446 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 151/464 (32%), Positives = 248/464 (53%), Gaps = 23/464 (4%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 L ++ +S++ + + P Y +WF + + + ++VPT + + + Sbjct: 1 MLNLDLDSLWQYIIESFSKSLNPASYKAWFGPAEPVQYIDQTLIVNVPTPLHRDYWTQKL 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I+ L QE V + K S P+ S T K + + Sbjct: 61 NGQISDLIQEVSGEKITV-----------LAKLPSDPNPLANSESVTTPKKVSVAENNNS 109 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S + + L+ R+ F TF+ G N++A AA ++AE Y NPLF + VGLGK Sbjct: 110 SSFLKETQLNDRYTFDTFVVGKGNQLAHAAALAVAEEPGVFY-----NPLFFYGGVGLGK 164 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + ++ +P+ +V Y+T+E F F S+I+ + R++DLLL+DD+Q Sbjct: 165 THLMHAIGHQMLENRPDAKVKYVTSESFANDFISSIQTKRQEEFRREYRSVDLLLVDDIQ 224 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K Q EF H N+L D KQ+V ++DR P+E+ L R+ SR + G+SV + D Sbjct: 225 FFADKVGTQEEFFHTFNALYDDKKQIVLSSDRLPNEIPKLQQRLVSRFKWGLSVDITPPD 284 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 +E R +IL+N + E ++I ++ L ++A + ++ REL+GA ++ S Sbjct: 285 FETRIAILRN-----KAEAEHVSIPDDTLSYIAGQIDSNIRELEGALMRVEAFSSMTRTP 339 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 ++ +A E L +L +G++ K+ I IQ VAK+Y+++ DL +RV+++V PRQ+AMY Sbjct: 340 ISTSLAAEALKNLKVSGKSSKLTIPIIQDKVAKYYHVTIADLKGKKRVKSIVIPRQIAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 LS+ +T S P+IG FG +DHTTV+HA K+ + L TD TL K Sbjct: 400 LSRELTDASLPKIGNEFGGKDHTTVIHAHEKIAEALHTDTTLXK 443 >gi|239947628|ref|ZP_04699381.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] gi|239921904|gb|EER21928.1| chromosomal replication initiator protein DnaA [Rickettsia endosymbiont of Ixodes scapularis] Length = 463 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 173/470 (36%), Positives = 284/470 (60%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMII 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + LP +T + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIEIITKE--LPGTTQTVIELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAESSG---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++L+ DI L +E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLKNDIELSEEINLLMKILQ 462 >gi|254796642|ref|YP_003081478.1| chromosomal replication initiator protein DnaA [Neorickettsia risticii str. Illinois] gi|254589879|gb|ACT69241.1| chromosomal replication initiator protein DnaA [Neorickettsia risticii str. Illinois] Length = 598 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 151/480 (31%), Positives = 266/480 (55%), Gaps = 11/480 (2%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 + +C E + + V+ +L+ G +Y SW + + F + V LSVPT F+K Sbjct: 128 AEQHDKCTEGIGPAEWDRVTRKLRKFYGEKIYGSWLKFMSFKEMKCGQVFLSVPTGFIKE 187 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 WI YL I + E I +EI V ++E + + IS Sbjct: 188 WITVNYLGNILGFLRNEDPTIISIEISVNKEHDRALESDREE---LVAPFVKSKISGERD 244 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + + S S +D F +F+ G SN +A TA++ +AE NPLF++ Sbjct: 245 RFDRGSFSESLSSSIDRSRTFDSFVVGKSNELAFTASKRVAEAAELPIPGS--NPLFLYG 302 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 VGLGKTHL+ AI + RV+YL+AE FM ++ +A+++ ++ K R++D+L Sbjct: 303 GVGLGKTHLMHAIVWHIKANYADRRVIYLSAEKFMHKYITALKNKDMMSFKQIFRSVDVL 362 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 ++DD+QF+ GK Q EF H N+L++ KQ+V +ADR PS+L+ ++ RI+SRL G+ Sbjct: 363 MVDDVQFISGKESTQEEFFHTFNALIEQNKQLVISADRSPSDLQGVEERIQSRLSWGLVA 422 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + +E+R IL+++L + + + ++V+ +AR + ++ REL+GA N+++ Sbjct: 423 DINQTTFELRVGILESKLEQMKS---DIVVPKKVVEFMARNIVSNVRELEGALNKVIAHS 479 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 ++T + A +LL+ ++ T + + +E+I V++++ I +DL S RRV+ V Sbjct: 480 EITGSVVTVDSAKDLLADILRTN-SVAVTLENILAKVSEYFGIKISDLKSQRRVKDVAYA 538 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RQ+ M+L+K +T RS +IG+ G RDH TV+H+VRK+E +++ D + ++V +L + ++ Sbjct: 539 RQMCMFLAKTLTQRSLIDIGKFLGGRDHATVIHSVRKIEILIKNDARVAEDVRILTKRLT 598 >gi|256820765|ref|YP_003142044.1| chromosomal replication initiation protein [Capnocytophaga ochracea DSM 7271] gi|256582348|gb|ACU93483.1| chromosomal replication initiator protein DnaA [Capnocytophaga ochracea DSM 7271] Length = 473 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 140/483 (28%), Positives = 235/483 (48%), Gaps = 21/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ E +++ +K+ + + +WF + + N + + VP+ F W++ Y+ Sbjct: 1 MKEAAEKVWSRCLEFIKDNITEQPFNTWFAPIVPVELEGNTLKIKVPSKFFCEWLEENYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +V + + + P + K + +K P + I Sbjct: 61 SLLKSAMTFTLGVNSRLVYIVDTPLTKEQLPSTNRPELAKQTLTLATETKDPGLKNPFVI 120 Query: 151 SPV----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ F F+EG+SNR+A +A ++A NPLFI VG Sbjct: 121 PGIREITVDPQLNLHQNFDNFVEGASNRLARSAGMAVANKPG----GTAFNPLFIFGGVG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA-----IRDNCALNLKDSLRNID 261 LGKTHL AI ++ P +V+Y++AE F +F SA N + + ID Sbjct: 177 LGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFIHFYQLID 236 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L++DD+QFL GK Q F H+ N L + KQV+ +D+ P +L ++ R+ SR + G+ Sbjct: 237 VLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLLSRFKWGL 296 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S L DYE R+ IL+N+ E I E+++ ++A + T+ REL+G N L+ Sbjct: 297 SAELQTPDYETRYKILENKFYNDGAE-----IGEDIIAYLAENIRTNVRELEGVSNSLIA 351 Query: 381 RHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + +F + E+A ++ V + I+ IQ+++A ++ + L S R R VV Sbjct: 352 QAAFNRKEYSIELAQSIIDKSVKNNRN-DLTIDHIQQIIADYFGLDIESLHSKTRKRNVV 410 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+AM+ SK T S IG + G RDH TVLHA + VE ++ETD KK V L+ Sbjct: 411 QARQLAMFFSKKYTKNSLYTIGSQIGQRDHATVLHACKTVENLIETDRAFKKYVSDLETK 470 Query: 500 ISE 502 S+ Sbjct: 471 FSD 473 >gi|331092112|ref|ZP_08340943.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 2_1_46FAA] gi|330402313|gb|EGG81884.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 2_1_46FAA] Length = 456 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 137/476 (28%), Positives = 248/476 (52%), Gaps = 42/476 (8%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ + +L+ + + + +W + LK H V N V L IK++Y + Sbjct: 8 WSEIIEKLRIEYGLSNVSFNTWIKPLKVHEVKDNTVFLLCELKASIDHIKHKYELPLRVC 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + E V + +++T + K+ I + + Sbjct: 68 IAE----VTDEEFNVAFICEDDIKQTETKEENQKIKTI------------------IEQA 105 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ ++ F TF+ G++N+ A A+ ++AE Y NPLF++ VGLGKTHL+ +I Sbjct: 106 NLNHKYTFDTFVVGNNNQFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSI 160 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDN------CALNLKDSLRNIDLLLIDDMQF 270 A+ ++ P +V+Y+T+E F AI+ + ++ RNID+LLIDD+QF Sbjct: 161 AHFILEEDPTKKVLYVTSETFTNELIEAIKSGRTGNESTMTSFREKYRNIDVLLIDDVQF 220 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H N L S KQ++ ++D+PP + E+L+ R+R+R + G+ + DY Sbjct: 221 IIGKESTQEEFFHTFNHLHVSGKQIILSSDKPPKDFETLEARLRTRFEWGLIADISSPDY 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA---- 385 E R +IL+ ++ + + +I ++V+ ++A V ++ REL+G+ N+L+ + Sbjct: 281 ETRMAILQKKIELDNLDV--YHIPDDVVEYIANNVKSNIRELEGSLNKLIALYKLNYNSS 338 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A E L +++ E + + I+ I +VA+H+N+S DL S +R +V PRQ+A Sbjct: 339 KEIDIPLAAEALKDIISPNENRTITIDLIIDVVAEHFNVSVADLKSGKRNSEIVMPRQIA 398 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + M IG G RDH+T+ H V K++ L+T+ TL ++++K+ ++ Sbjct: 399 MYLCRTMIDTPLKSIGIILGGRDHSTINHGVDKIKAELKTNDTLNNTIDIIKKKLN 454 >gi|28376975|ref|NP_783867.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum WCFS1] gi|254555170|ref|YP_003061587.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum JDM1] gi|300769106|ref|ZP_07078995.1| DNA-directed DNA replication initiator protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179192|ref|YP_003923320.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum subsp. plantarum ST-III] gi|38257539|sp|Q890K8|DNAA_LACPL RecName: Full=Chromosomal replication initiator protein DnaA gi|28269806|emb|CAD62703.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum WCFS1] gi|254044097|gb|ACT60890.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum JDM1] gi|300493346|gb|EFK28525.1| DNA-directed DNA replication initiator protein [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044683|gb|ADN97226.1| chromosomal replication initiation protein DnaA [Lactobacillus plantarum subsp. plantarum ST-III] Length = 455 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 132/463 (28%), Positives = 230/463 (49%), Gaps = 20/463 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ ++ ++ + + ++ + K + + + VPT + + + T Sbjct: 5 NDLWNLIKFSMEQDLSKITFQTFVEPAKPLQLDKAQMTIEVPTQLHRDYWEKNLAAKFTD 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + ++ E+ + K S + T T + + Sbjct: 65 IAMQATNEQIRPVMI--------TEEERQQLTRDKDSQVTTGNVAGQQPTTATTPTFMRE 116 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F TF+ G N++A AA ++E Y NPLF + VGLGKTHL+ A Sbjct: 117 TKLNPKYTFDTFVIGKGNQMAHAAALVVSEEPGTMY-----NPLFFYGGVGLGKTHLMHA 171 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ P + Y+T+E F +AI+ ++ RN+DLLL+DD+QF K Sbjct: 172 IGNKLLETDPTSNIKYVTSESFTNELINAIQTKKQEAFREEYRNVDLLLVDDIQFFANKE 231 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L + KQ+V +DR P+E+ L R+ SR + G+SV + D E R + Sbjct: 232 ATQEEFFHTFNALYEDDKQIVLTSDRLPNEIPQLQDRLVSRFKWGLSVDITPPDLETRIA 291 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIA 393 IL+N + + + I ++ L ++A + ++ REL+GA ++ +T + Sbjct: 292 ILRN-----KADLEGIEIPDDTLSYIAGQIDSNVRELEGALARVQAYSRLNNSPITTSLV 346 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L L + + ++ I IQ VAK+++++ DL +R + +V PRQ+AMYLS+ +T Sbjct: 347 ADALKSLHLSSKLSEVSIPVIQEKVAKYFHVTMADLKGKKRNKQIVIPRQIAMYLSRELT 406 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 S P IG FG +DHTTV+HA K+ K L+TD L+K V L Sbjct: 407 ESSLPRIGNEFGGKDHTTVIHAHDKITKALKTDAELQKAVGDL 449 >gi|325663383|ref|ZP_08151833.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 4_1_37FAA] gi|325470837|gb|EGC74067.1| chromosomal replication initiator protein dnaA [Lachnospiraceae bacterium 4_1_37FAA] Length = 452 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 140/473 (29%), Positives = 242/473 (51%), Gaps = 36/473 (7%) Query: 36 ESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E + + +LK + + + +W L+ + V N V++ V +IKN+YL Sbjct: 5 EENWEEIIQKLKIEHSLTDVSFKTWILPLRVYKVTSNTVYILVNLKASIDYIKNKYLLP- 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 FQ + + G E V+ +A + K ++ Sbjct: 64 ---FQVCIAEVVGKEYEVKFIAENEFDPKDFEDKTA---------------TPKSKVTVS 105 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F TF+ G +N A A+ ++AE Y NPLF++ VGLGKTHL+ Sbjct: 106 QAANLNPKYTFDTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLM 160 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC------ALNLKDSLRNIDLLLIDD 267 +IA+ ++ +P +V+Y+T+E F AI++ ++ R+ID+LLIDD Sbjct: 161 HSIAHFILENEPEKKVLYVTSETFTNELIEAIKNGKTGNESAMTAFREKYRSIDVLLIDD 220 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+RSR + G+ + Sbjct: 221 IQFIIGKESTQEEFFHTFNHLHISGKQIIISSDKPPKDIETLEARLRSRFECGLVADISS 280 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DYE R +IL+ + + + K NI + V+ ++A V ++ REL+G+ N+L+ + Sbjct: 281 PDYETRMAILRKKEELDGLD--KYNIPDAVMQYIASNVKSNIRELEGSLNKLIALYKLKN 338 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A E L +V+ E +++ E I +V++H+NIS DL S +R + PRQ+ Sbjct: 339 APIDINLAAEALKDIVSPNENRQVTPELILDVVSEHFNISIADLKSGKRNAEIAIPRQIV 398 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 MYL + MT IG G RDH+T+ H V KV ++ T ++++K+ Sbjct: 399 MYLCRTMTDTPLKAIGLTLGGRDHSTISHGVDKVTADIKASDTFSNTIDIIKK 451 >gi|229100789|ref|ZP_04231609.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-28] gi|228682628|gb|EEL36685.1| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock3-28] Length = 337 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 139/346 (40%), Positives = 217/346 (62%), Gaps = 12/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI Sbjct: 2 LNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIG 56 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + I+ PN +VVYL++E F F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Sbjct: 57 HYVIEHNPNAKVVYLSSEKFTNEFINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQT 116 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR + G+ + D E R +IL Sbjct: 117 QEEFFHTFNALHEESKQIVISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAIL 176 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 + + + L+I EV++++A + ++ REL+GA ++V S + A++A E Sbjct: 177 RK-----KAKAEGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLINKDINADLAAE 231 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++ + K + I DIQ+ V Y + D + +R ++V PRQ+AMYLS+ +T Sbjct: 232 ALKDIIPNSKPKIISIYDIQKAVGGVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDS 291 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P+IG FG RDHTTV+HA K+ K+L+TD L+K+VE + ++ Sbjct: 292 SLPKIGEEFGGRDHTTVIHAHEKISKLLKTDTQLQKQVEEIHDILK 337 >gi|15604451|ref|NP_220969.1| chromosomal replication initiation protein [Rickettsia prowazekii str. Madrid E] gi|2494138|sp|Q59758|DNAA_RICPR RecName: Full=Chromosomal replication initiator protein DnaA gi|1305533|gb|AAA99160.1| DnaA protein [Rickettsia prowazekii] gi|3861145|emb|CAA15045.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA (dnaA) [Rickettsia prowazekii] gi|292572223|gb|ADE30138.1| Chromosomal replication initiator protein DnaA [Rickettsia prowazekii Rp22] Length = 463 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 173/470 (36%), Positives = 287/470 (61%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNVWSYVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYAMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ +EI+ + + + + SP+ T N+ ++ I+ Sbjct: 74 LQLFQHYNNAIKSIEIITKEL-PGTTQAVIESPTKTFADIGNSALNSENIV--------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G N +A AA+++AE + + NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGVPNELAYAAARAVAESSGAVFES---NPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P +V+Y++AE FM++F A+R+ + K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPRRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVINFLASKIVSNVRELEGALNKVIAHSNFTLKAITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMYSSRRLREVARPRQIAMYLSKT 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKILQ 462 >gi|225570325|ref|ZP_03779350.1| hypothetical protein CLOHYLEM_06422 [Clostridium hylemonae DSM 15053] gi|225160857|gb|EEG73476.1| hypothetical protein CLOHYLEM_06422 [Clostridium hylemonae DSM 15053] Length = 462 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 140/476 (29%), Positives = 249/476 (52%), Gaps = 36/476 (7%) Query: 39 FTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + L+ +++ +++W Q LK + V+ + V + V N +I+ +YL + Sbjct: 8 WQEIIEHLRIEHELSNVSFSTWIQPLKVYDVIDSTVFILVNMNASVEYIEKKYLLPLKVC 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + L + + + K K+T S + Sbjct: 68 IAEITGTEYEIVFLSEDDDRIDEIQNMAIEASQK----------------KKTKSAAEKA 111 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ ++ F TF+ G +N A A+ ++AE Y NPLF++ VGLGKTHL+ +I Sbjct: 112 GLNPKYTFDTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSI 166 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC-------ALNLKDSLRNIDLLLIDDMQ 269 A+ +++ P +V+Y+T+E F A+++ +D RN D+LLIDD+Q Sbjct: 167 AHFILEKSPKKKVLYVTSETFTNELIDALKNGKTAGNESAMSKFRDKYRNNDVLLIDDIQ 226 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + + Sbjct: 227 FIIGKESTQEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADISAPN 286 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF---A 385 YE R +IL+ ++ + + E K NI ++V+ ++A + T+ REL+G+ N+L+ + A Sbjct: 287 YETRMAILQKKIELDKLE--KYNIPQDVIEYIATNIKTNIRELEGSLNKLIALYKLNNNA 344 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A E L ++++ +++ E I +V++H+ +S DL SN+R + PRQ+A Sbjct: 345 TQIDITLASEALKDIISSKNNREVTPELILDIVSEHFGVSIADLKSNKRNADISNPRQIA 404 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + MT IG G +DH+TV H V K+ K + TD TL V ++K+ I+ Sbjct: 405 MYLIRSMTDTPLKSIGIFLGGKDHSTVKHGVDKITKEVTTDETLSNTVSIIKKKIN 460 >gi|121606999|ref|YP_984328.1| chromosomal replication initiation protein [Polaromonas naphthalenivorans CJ2] gi|120595968|gb|ABM39407.1| chromosomal replication initiator protein DnaA [Polaromonas naphthalenivorans CJ2] Length = 465 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 141/469 (30%), Positives = 234/469 (49%), Gaps = 18/469 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ I L ++ + +W + L + + V F W++ +Y I Sbjct: 11 DDLWQICVDHLAQELPEQQFNTWIRPLVVIVAPDLSKATVQVGNRFKLDWVRAQYAARIA 70 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 LF++ + +E+ + P S + K + + ++ F Sbjct: 71 ALFEQLSGQRIPIELAL----APREAPVKSELVVRKFERAAGVAELASVGTPEEAAGSAF 126 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+S F T IEG++NR+ AA +A Y NPLFI+ VGLGKTHL+ Sbjct: 127 KNRLNSALTFDTLIEGTANRMGRAAALHVASSLGQLY-----NPLFIYGGVGLGKTHLMH 181 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + P +V+Y+ AE F+ A + + K+ ++DLLLIDD+QFL K Sbjct: 182 AIGNKLMADNPAAKVLYIHAEQFVSDVVKAYQRKTFDDFKERYHSLDLLLIDDVQFLANK 241 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L + R+ SR G++V + + EMR Sbjct: 242 DRTQEEFFNAFEALLTKKSHIVMTSDTYPKGLADIHERLVSRFDSGLTVAIEPPELEMRV 301 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL I + + + EEV VA+ V ++ REL+GA ++ F+ ++ ++ Sbjct: 302 AIL-----IRKADADGAVLPEEVAFFVAKNVRSNVRELEGALRKIQAYSRFSHKEISIQL 356 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R + RPRQ+AMYL+K + Sbjct: 357 AREALRDLLSIQ-NRQISVENIQKTVANYYKIKVADMYSKKRPANIARPRQIAMYLAKEL 415 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 416 TQKSLPEIGELFGGRDHTTVLHAVRKMAAERQLMTELNQQLHVLEQTLK 464 >gi|5702042|emb|CAB52256.1| dnaA protein [Wolbachia sp. wRi] Length = 454 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 168/458 (36%), Positives = 261/458 (56%), Gaps = 34/458 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + + L N G Y SW LKF S + V LSV T F+K WI Y++ I L+Q Sbjct: 26 WEKIQNCLYNLYGEATYNSWLSSLKFVSSRNGEVLLSVSTRFIKEWITVHYMKKILSLWQ 85 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E I+ ++I V N + + I+ ++ + GSPL Sbjct: 86 SEDKSIRSIDIQVIE---------------------ERNSNFNVILKNREESNHNLGSPL 124 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D RF F F+ G N +A TAA+ +AE + NPLF++ VGLGKTHL+ AIA Sbjct: 125 DPRFTFDNFVVGKPNELAFTAAKRVAESIDP---ILGSNPLFLYGGVGLGKTHLMHAIAW 181 Query: 219 ASIKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 + P+ + VVYL+AE FM+++ +A+R + K+ R++D+L++DD+QF+ GK Sbjct: 182 HIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDVQFISGKDS 240 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R I Sbjct: 241 TQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGI 300 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ ++ E + + ++VL +AR + ++ REL+GA N++ +T E A E Sbjct: 301 LQ-----AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRSMTVESASE 355 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY +K T + Sbjct: 356 TLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMYFAKKFTQK 414 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 S P+IGR FG RDH TV+HAV++VE ++TD E+ Sbjct: 415 SLPDIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEI 452 >gi|260654348|ref|ZP_05859838.1| DNA replication initiator protein, ATPase [Jonquetella anthropi E3_33 E1] gi|260630981|gb|EEX49175.1| DNA replication initiator protein, ATPase [Jonquetella anthropi E3_33 E1] Length = 443 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 244/471 (51%), Gaps = 32/471 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + + ++ + + + + +W + S + + + + F++ I+NRYL+ Sbjct: 3 DQELKDLWENLLALAEPLLPAGTVETWLKSCVPLSYVDDTLTVDAANVFIENTIRNRYLK 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 T+ +L G I + +V + S S P K+P G Sbjct: 63 TLEELMSRAG---LGQSICL------TVPQEKDSSSGKPEQPQRVAEPKNPSPTG----- 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ + FS+F+ G SNR+A A+ ++A+ Y+ PLFI VGLGKTH Sbjct: 109 ------LNPNYKFSSFVVGRSNRLAHAASLAVADNPGSAYS-----PLFIWGGVGLGKTH 157 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + ++ + P LRV Y+++E F +AI++N + R++DLLLIDD+QF+ Sbjct: 158 LMHAIGHHALAQNPRLRVTYVSSEKFTNELITAIKNNKTAEFRSKYRHMDLLLIDDIQFI 217 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L D+ KQ+V ++DRPP E+ ++ R+ SR + G+ + DYE Sbjct: 218 AGKESTQEEFFHTFNTLHDNKKQIVLSSDRPPKEISDIEERLVSRFEWGLVTDIQQPDYE 277 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R +ILK + E + +EV ++A+ + ++ REL+G+ N+++ + +T Sbjct: 278 TRIAILKK-----KAESRNYPLPDEVAAYLAQNIPSNIRELEGSLNRVIACAELSSEQIT 332 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E A E L ++ + + IE IQ++VA+ + DL+S +R + RQ+AM+L Sbjct: 333 VERAVEWLKDMIGSKRRGVITIETIQQIVAEECGFTVEDLVSRKRTNDIALSRQIAMFLC 392 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + T S +I F +DHTTVLHA RK+ +L ++ +K VE +++ + Sbjct: 393 RTHTECSLQQISTAFRKKDHTTVLHAHRKISSLLMENLRVKALVENIEKKL 443 >gi|157803546|ref|YP_001492095.1| chromosomal replication initiation protein [Rickettsia canadensis str. McKiel] gi|166214698|sp|A8EY77|DNAA_RICCK RecName: Full=Chromosomal replication initiator protein DnaA gi|157784809|gb|ABV73310.1| hypothetical protein A1E_01825 [Rickettsia canadensis str. McKiel] Length = 463 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 176/470 (37%), Positives = 283/470 (60%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYLNVWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ VEI+ + LP KT + I ++ + I Sbjct: 74 LQLFQHYNNTIKSVEIITKE--LPGTSKTVIELPTKTFADIGSSELNAENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGVPNELAYAAARAVAESTD---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + PN +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPNRKVIYMSAEKFMYQFVKALRNKEVISFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQIVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I + V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKNVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKT 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTPKSLADIGKKFGKKDHTTVMHAIKKVEELLENDIELREEINLLMKILQ 462 >gi|189345559|ref|YP_001942088.1| chromosomal replication initiation protein [Chlorobium limicola DSM 245] gi|189339706|gb|ACD89109.1| chromosomal replication initiator protein DnaA [Chlorobium limicola DSM 245] Length = 491 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 134/472 (28%), Positives = 241/472 (51%), Gaps = 17/472 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ + +K+++ P + +WF +K + + + + VP+ F WI+ Y + + Sbjct: 25 HQVWSSCLNAIKDKINPLAFKTWFLPIKPVNFSGSELTIEVPSQFFYEWIEENYSSYLKQ 84 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSP-SITKLSPINTNISKSPIILGKQTISPV- 153 ++ + + T P T + S++ I ++ Sbjct: 85 ALKDVIGPEAKLMYSIVMDKSQGQPVTIELPHQNTPGNDCRAEKSETQAIASERRDYERN 144 Query: 154 ---FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F + L++++ F T I G N +A A++SIA+ NPL I+ VGLGKT Sbjct: 145 LMRFETHLNTKYTFETLIRGDCNSLAFAASKSIAQNPGQN----AFNPLVIYGGVGLGKT 200 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 H++QAI N+ + +V+Y+++E F F +AI++ R ID+L+IDD+QF Sbjct: 201 HMIQAIGNSVRTNCLSEKVLYVSSEKFAIDFVNAIQNGKIQEFSSFYRTIDVLIIDDIQF 260 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q E H+ N+L S KQ++ +ADRP E++ ++ R+ SR G+S + DY Sbjct: 261 FAGKEKTQEEIFHIFNTLHQSNKQIILSADRPIKEIKGIEDRLISRFNWGLSADIQPPDY 320 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +I+ +S+ +N++E V+ +A VT + REL+G +L+ S + Sbjct: 321 ETRKAII-----LSKLHQSGVNLDEAVIEFIATNVTENVRELEGCIVKLLAAQSLDNQEI 375 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + L ++ TK++ ++ I++ V Y+I+ NDL + + + RQ+AMYL Sbjct: 376 DLQFTKSTLKDIIR-HTTKQLTLDTIEKAVCSFYSITPNDLKGKSKKKEIAAGRQMAMYL 434 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K++T S IG FG RDH+TV+HA+ +EK +E +K++E +K+ I Sbjct: 435 AKLLTESSLKTIGLHFGGRDHSTVIHALNTIEKRVEAISEERKKIEEIKKRI 486 >gi|254424343|ref|ZP_05038061.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7335] gi|196191832|gb|EDX86796.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7335] Length = 460 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 241/473 (50%), Gaps = 20/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + V E I+ V +L Q+ P + +W + K ++ ++ + L F + W++ YL Sbjct: 1 MAVIKEDIWNQVLEKLALQLSPPTFETWIKPTKVQTLSNDQLVLLTDNPFARNWLQKHYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I+ E V + V+ + S + L + + Q+ Sbjct: 61 TQISTAAAEVLGHTINVTVTVKDRDDTEKPLSPSEAANDSLPAASADTRGKASSKTNQS- 119 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ + +FS F+ G++NR+A AA ++AE NPLF+ VGLGKT Sbjct: 120 ----SSALNPKAIFSRFVVGANNRMAHAAALAVAESPGR-----EFNPLFLCGGVGLGKT 170 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + I+ +V Y++ E F ++IR + ++ R +D++L+DD+QF Sbjct: 171 HLMQAIGHYRIESNQQAKVAYVSTETFTNDLIASIRRDTMQRFREQYREVDVILVDDIQF 230 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQ+V A+DRPP+++ L R+ SR G+ + D+ Sbjct: 231 IEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPNQIPRLQDRLCSRFSMGLIADIQSPDF 290 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E +++I +V ++A + T+ REL+GA + + + I Sbjct: 291 ETRMAILQK-----KAEYEQVSIARDVTEYIASSYVTNIRELEGALTRAIA---YTSISG 342 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E L ++N + + + + V+ + IS +DL SN R R + + RQV MYL Sbjct: 343 LPMTVENLVPVLNPPVERVDSSPKSVIKAVSDAFKISLDDLKSNSRKREISQARQVGMYL 402 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P+IG +FG +DHTTV+++ K+ ++++ D+ L + V + I+ Sbjct: 403 MRKHTDLSLPKIGDQFGGKDHTTVMYSCDKIAQLIKQDLNLAQTVREVSDRIT 455 >gi|262281562|ref|ZP_06059341.1| chromosomal replication initiator protein DnaA [Acinetobacter calcoaceticus RUH2202] gi|262257021|gb|EEY75760.1| chromosomal replication initiator protein DnaA [Acinetobacter calcoaceticus RUH2202] Length = 468 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 152/477 (31%), Positives = 259/477 (54%), Gaps = 24/477 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEVE-GILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 ++ R++ VEILV S + + + ++ ++ P + + K P + + Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSAEQPATTTAALQSAPPQSIKVKKEPESVSSPHTNT 120 Query: 153 VFGSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 V L+ +F FS F+EG SN++A + + + NPLF++ G Sbjct: 121 VVNPKTAKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+D Sbjct: 177 LGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVD 236 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 237 DIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVE 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 297 PPDIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFK 351 Query: 386 P-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+ Sbjct: 352 GAPIDLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQL 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 411 AMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVASLREEDPIFDEDYKNLLRLLQ 467 >gi|254468744|ref|ZP_05082150.1| chromosomal replication initiator protein DnaA [beta proteobacterium KB13] gi|207087554|gb|EDZ64837.1| chromosomal replication initiator protein DnaA [beta proteobacterium KB13] Length = 450 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 136/470 (28%), Positives = 252/470 (53%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E + I+S++LK ++ + +W + L ++ + P F++ W+ +R+ + Sbjct: 1 MKTEEFWEIISTQLKKKLTAQQFKTWVKPLSIREKEDSLE-IVAPNQFIQQWVTDRFSKE 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I ++ +E +I+ + V + + T +S + P + + +I Sbjct: 60 IIEIGKEH--KIKNKILFVTEKGKKNSKPTNTSEEKNDVKPKVEDRAPKAVINK------ 111 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ F F+ G +N++A AA+ ++E Y NPLFI+ VGLGKTHL Sbjct: 112 --STGLNKNLNFENFVTGRANQLATAAAKQVSERPGESY-----NPLFIYGGVGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 LQ+I N + + ++ YL AE ++ A K + ++DLLLIDD+QF+ Sbjct: 165 LQSIGNKVKEENKDFKIKYLHAERYVTDVVKAYEGKTFDQFKKNYHSLDLLLIDDIQFIG 224 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N+L+++ KQ++ D P E++ +D R+R+R G++V + + EM Sbjct: 225 KKNRTQEEFFYAFNTLIENKKQIIITCDSYPKEIQGVDERLRTRFSWGLTVAIEPPELEM 284 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL + + E K+ + E+V +A+ + ++ REL+GA N++V +F + + Sbjct: 285 RVAIL-----LKKAEISKITLPEDVAFFIAKQIRSNVRELEGALNRIVALSNFTNLPIDL 339 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L L+ +++ IE+IQ+ VA +Y I +D++ +R R +PRQVAM L++ Sbjct: 340 NLAKEALKDLIAVR-GRQVTIENIQKTVADYYKIKISDMVGKKRSRNFSKPRQVAMALTR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S+PEIG FG R HTTV+HA ++E+ + +L +++ L +++ Sbjct: 399 ELTNLSYPEIGNYFGGRHHTTVMHACEEIEEQRLNNQSLGQDLGFLTQVL 448 >gi|50083298|ref|YP_044808.1| chromosomal replication initiation protein [Acinetobacter sp. ADP1] gi|61212579|sp|Q6FG21|DNAA_ACIAD RecName: Full=Chromosomal replication initiator protein DnaA gi|49529274|emb|CAG66986.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter sp. ADP1] Length = 465 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 150/474 (31%), Positives = 259/474 (54%), Gaps = 21/474 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L ++ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEETTDSL-RLYAPNPYWTRYIQEHHLELISILV 60 Query: 98 QE-EHSRIQGVEILVRS----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 ++ RI+ VEILV S + P+ + ++ +++ + + K + + Sbjct: 61 EQLSEGRIRQVEILVDSRPGAILSPAEQPATTTAALSSTPVVPQRVKKEVVEPAATQSNK 120 Query: 153 VFGSP---LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S L+ F FS F+EG SN++A + + + NPLF++ GLGK Sbjct: 121 ILNSKKRLLNPLFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QA+ NA ++ +PN RV+Y+TAE F+ F S+++ K + R++DLLL+DD+ Sbjct: 177 THLMQAVGNALLQAKPNARVMYMTAESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIH 236 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D Sbjct: 237 LLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPD 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 297 IETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAIARFKGSQ 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM Sbjct: 352 IDLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELIGPKRTRIYARPRQLAMG 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T SFPEIG FG RDH+TV+HA KV+ + + D ++ + L RL+ Sbjct: 411 LARELTGDSFPEIGMAFGGRDHSTVMHACEKVQSLKQEDPIFNEDYKNLLRLLQ 464 >gi|260553772|ref|ZP_05826042.1| chromosomal replication initiator protein DnaA [Acinetobacter sp. RUH2624] gi|260405076|gb|EEW98576.1| chromosomal replication initiator protein DnaA [Acinetobacter sp. RUH2624] Length = 465 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 153/474 (32%), Positives = 252/474 (53%), Gaps = 21/474 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEVE-GILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS-------VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 ++ R++ VEILV S TA+ S P P+ + Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSNEQPATTTAALQSAPVSQPTKVKREPEPVANPAVS 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+ +F FS F+EG SN++A + + + NPLF++ GLGK Sbjct: 121 SKTSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 177 THLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIH 236 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D Sbjct: 237 LLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPD 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 297 IETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAP 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM Sbjct: 352 IDLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLAMG 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 411 LARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLLQ 464 >gi|318040987|ref|ZP_07972943.1| chromosomal replication initiation protein [Synechococcus sp. CB0101] Length = 478 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 137/479 (28%), Positives = 234/479 (48%), Gaps = 28/479 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ V L+ + + +W + + L P F W++ YL TI Sbjct: 7 ETLWRQVQEALQGNLSKPTFETWIRPACCAGFNGTELQLLAPNAFACGWLRKNYLVTIAS 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEK-----------TASSPSITKLSPINTNISKSPII 144 + E R + + V + P + + S S + + + Sbjct: 67 VASEIAGRP--ISVQVEAGRDPDLAQGLNGNGFQAPLAPGEASPVGESSLPGGAASASQR 124 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 L L+ R+VF+ F+ G ++R+A AA ++AE NPLFI Sbjct: 125 LPTGETPRKLAPGLNPRYVFNRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGG 179 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QAI + ++ P RV Y++ E F AIR + +D R DL+L Sbjct: 180 VGLGKTHLMQAIGHYRLEIDPEARVAYVSTETFTNDLIQAIRKDGMQKFRDRYRAADLIL 239 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ Sbjct: 240 VDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIAD 299 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R +IL + E ++N+ +++ ++A T++ REL+GA + V Sbjct: 300 IQAPDLETRMAILHK-----KAEHERVNLPRDLIQYLAGRFTSNIRELEGALTRAVA--- 351 Query: 384 FAPILTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 FA I + E ++ +++ + ++ + VA+ + +S ++ S R R V + R Sbjct: 352 FASITGLPMTVESVAPMLDPAGVEVEVTPAQVLNKVAEVFGVSVEEMKSPSRKRAVSQAR 411 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QV MYL + T S P IG FG +DH+TV++AV +++K L D L ++V+ ++ L+ Sbjct: 412 QVGMYLMRQGTNLSLPRIGDEFGGKDHSTVMYAVEQIDKKLNADPQLGRQVQQVRDLLQ 470 >gi|85857846|ref|YP_460048.1| chromosomal replication initiator protein [Syntrophus aciditrophicus SB] gi|85720937|gb|ABC75880.1| chromosomal replication initiator protein [Syntrophus aciditrophicus SB] Length = 457 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 144/477 (30%), Positives = 251/477 (52%), Gaps = 26/477 (5%) Query: 26 VDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 +D+ C+ ++++ +K ++ P + +W + LK S+ N LSVP F K W+ Sbjct: 1 MDRYCI---VDNLWEESIKIIKEKISPQNFETWIRPLKVVSLEGNHASLSVPNKFFKDWL 57 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 Y + I+ + ++ ++ L EK + S + I I Sbjct: 58 TENYRDVISDAVSSSAGKDYAIDFVI----LQESEKNSRSAHPARKKKIIEQI------- 106 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 ++ I P L+ + F F+ GSSN+ A AA ++AE + Y NPLFI+ V Sbjct: 107 PQEKIRPKIHPTLNPNYSFERFVVGSSNQFAHAAAVAVAEQPAKNY-----NPLFIYGGV 161 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL AI S+ P++ VVY++AE FM +IR + ++ RNID LL+ Sbjct: 162 GLGKTHLLNAIGLLSMSIYPDMNVVYVSAEEFMNELILSIRYDKMPQFREKFRNIDCLLM 221 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H N+L DS KQ+V +D+ P ++ +L+ R+RSR + G+ + Sbjct: 222 DDIQFIAGKERTQEEFFHTFNTLHDSGKQIVVTSDKFPKDIPNLEGRLRSRFEWGLIADI 281 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS- 383 + E + +IL+ + ++ ++I V +++ ++ REL+G ++ S Sbjct: 282 QPPEIETKIAILEK-----KAQENNIHIPTNVAYYISSHAESNIRELEGFLVRIAAYSSV 336 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + ++ E+L ++ E+ ++ E+I + VA YN+ D+ S + + + RQ Sbjct: 337 TGRNIDLDLVKEVLKDIIKHRESDEISFEEILKAVAARYNLKIADIKSQSKNKNIAMARQ 396 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 V MY+++ +T SFP+IG + G RDH+TV++A K+ K+LETD LK ++ ++ + Sbjct: 397 VTMYMARKLTGSSFPDIGEKIGGRDHSTVIYANNKIRKLLETDSRLKATLQEIEDQL 453 >gi|221633151|ref|YP_002522376.1| chromosomal replication initiator protein DnaA [Thermomicrobium roseum DSM 5159] gi|254777921|sp|B9L0U6|DNAA_THERP RecName: Full=Chromosomal replication initiator protein DnaA gi|221156567|gb|ACM05694.1| chromosomal replication initiator protein DnaA [Thermomicrobium roseum DSM 5159] Length = 465 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 139/472 (29%), Positives = 238/472 (50%), Gaps = 19/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + ++ + L +V + +W + + ++ ++ P++F ++N++ Sbjct: 1 MRTKQLWQVALGDLAKRVSRANFETWLKHTELVALEGERATIAAPSSFAAEQLRNKFAAD 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + R V V + + + S+ + +++P Sbjct: 61 IQETLSLLLGRPIAVHFTVHG-------QDDEEHPVQRRPQRRALASEEGSASKQLSLTP 113 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+ F F+ G +NR+A AA ++A+ + NPLFI+ VGLGKTHL Sbjct: 114 SPEHGLNPRYTFEKFVVGPNNRLAHAAALAVADRPGE-----KFNPLFIYGGVGLGKTHL 168 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI + ++ +P L+V Y+++E F +AIR + ++ R ID+L+IDD+QF+ Sbjct: 169 LHAIGHRALANRPTLKVCYVSSEVFTNELINAIRHQRTDDFRNRYRTIDILMIDDIQFIA 228 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L S KQ+V ++DRPP + L R+RSR +GG+ + D E Sbjct: 229 GKESTQEEFFHTFNALYQSGKQIVISSDRPPRLIPDLADRLRSRFEGGLLADIQPPDLET 288 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R +IL I + + + + +V+ VAR + ++ REL+GA N++V +T Sbjct: 289 RQAIL-----IEKGRELGVQMPSDVVEFVARRIESNIRELEGALNRIVALAQLTHQPITL 343 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L +++ E + V +H+ +S +L+ R R +V PRQ+AMYL + Sbjct: 344 ALAVEALREGDARAVREQLTPELVLHAVCQHFRVSLAELVGPGRRREIVLPRQIAMYLLR 403 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S EIG+R G RDHTTVLH V KVE+ L +D L+ +V ++ + E Sbjct: 404 EELGLSLVEIGQRLGGRDHTTVLHGVDKVEEQLRSDEQLRADVLAVRARLYE 455 >gi|323141437|ref|ZP_08076327.1| chromosomal replication initiator protein DnaA [Phascolarctobacterium sp. YIT 12067] gi|322414093|gb|EFY04922.1| chromosomal replication initiator protein DnaA [Phascolarctobacterium sp. YIT 12067] Length = 459 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 259/471 (54%), Gaps = 18/471 (3%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + I+ +LK V+ W + + V ++V +F K ++ Y + I Sbjct: 5 DLAEIWVRCKDKLKESFNEKVFNVWIKPIMPLEVTDTYYKVAVKNDFFKTMLEENYAQVI 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + S+ +++++ ++ ++ S + ++ + + + ++ Sbjct: 65 EGVLAGIMSK--NIKLIIETM----DNGSSGSEAAEEMPAVPAKREQQQLFNENTSVQQP 118 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++VF TF+ G+SNR A AAQ++A +H Y NPLF++ VGLGKTHL+ Sbjct: 119 DESNLNPKYVFETFVIGNSNRFAHAAAQAVANDPAHAY-----NPLFLYGGVGLGKTHLM 173 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N + P+++V+Y ++E F ++I++ + RNID L+IDD+QFL+G Sbjct: 174 HAIGNRIKQNNPSMKVLYTSSEKFTNEIINSIQNKTTEAFRQKYRNIDCLIIDDIQFLKG 233 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L D+ KQ++ ++DRPP E+E+L+ R+RSR G++ + D E R Sbjct: 234 KEQTQVEFFHTFNALKDADKQIIISSDRPPREIETLEDRLRSRFDQGLTADIQTPDLETR 293 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+ + A + + EV+ +A + T+ RE++GA+N++V S + +T E Sbjct: 294 MAILRTKAASD-----NIVLPTEVITLLATNIATNIREIEGAYNKIVAYTSLMHMPITVE 348 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A ++LS + N +T+ + E I ++VA HYN+ +++L + +R + + PRQVAMYL + Sbjct: 349 TAQKVLSDMGNDIKTRTITYEGIIKVVADHYNVKQDELFNKKRTQNIAFPRQVAMYLCRE 408 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + S+P IG FG RDHTTV+HA K+ +++ + E++ + ++ + Sbjct: 409 LADLSYPRIGELFGGRDHTTVIHAYEKISNFKNSNLAFQNELQEIIEILRQ 459 >gi|330835984|ref|YP_004410625.1| chromosomal replication initiator protein DnaA [Spirochaeta coccoides DSM 17374] gi|329747887|gb|AEC01243.1| chromosomal replication initiator protein DnaA [Spirochaeta coccoides DSM 17374] Length = 470 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 155/475 (32%), Positives = 251/475 (52%), Gaps = 15/475 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E N + RLK + P Y W R+++ + LSVP+ F+ + + Sbjct: 4 VEENYSVFWLETEKRLKETISPTDYTVWISRIRYEGAAAGKLMLSVPSQFVYDKVDREFR 63 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT + + VE +++ ++ PS S + + S K+ I Sbjct: 64 SQITDIISDLTGEHIKVEFVIKKISAPSPAAPFSGGDDEENETKKPHAEVS--RTEKERI 121 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ + F FI G ++ A +AA +I++ Y NP ++ VGLGKT Sbjct: 122 IDYEASNLNPLYRFENFIAGENSAFAYSAAMAISKNPGVTY-----NPCLVYGGVGLGKT 176 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLLQ+I N ++ P L+VVY+TAE F F +I D K+ R + +LLIDD+ F Sbjct: 177 HLLQSIGNYILENNPELKVVYVTAEMFTNEFIQSIGDKKTQAFKNKYRKVGVLLIDDIHF 236 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQGK Q E H N L D+ KQ+V DRP SEL+ L R+RSR + G++V L +Y Sbjct: 237 LQGKDSTQEELFHTFNDLYDTHKQLVFTCDRPISELKDLTSRLRSRFERGLNVDLLPPNY 296 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +ILK + A ++I ++VL ++R V T+ R+L+ + +L+ + + Sbjct: 297 ETRMAILKRKSAEK-----NMSIPDDVLDFISRNVNTNVRDLEASLTKLIAYSTLLNKEI 351 Query: 389 TAEIADELLSHL-VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E L + + + IE I R+V+ ++N+S D+ ++ +++++PRQ+AMY Sbjct: 352 TLDIAKEQLKAFPAHNAASPSLSIETIIRVVSDYFNVSTYDVKGKKKTKSLIQPRQIAMY 411 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L++I+ S EIG FG +DH+TV+HA ++VE M++TD L + V+ L R I + Sbjct: 412 LARILCEYSTSEIGSEFGGKDHSTVMHAYQRVEGMIKTDEALNQTVQKLIREIRD 466 >gi|254414409|ref|ZP_05028175.1| chromosomal replication initiator protein DnaA [Microcoleus chthonoplastes PCC 7420] gi|196178639|gb|EDX73637.1| chromosomal replication initiator protein DnaA [Microcoleus chthonoplastes PCC 7420] Length = 461 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 142/473 (30%), Positives = 246/473 (52%), Gaps = 23/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E++ E ++ V RL+ Q+ + +W + + N + + P F + W++ Y+ Sbjct: 1 MEMSPEQLWIQVLERLQFQLSRPTFETWLKGTTAQQLDQNCLVVCTPNPFARNWLQKYYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +TIT + QE + + + V + T S I+ P+ N + + Sbjct: 61 KTITDVVQEILGQSVDIYLTV---ITDNDNTTISDTGISWSVPVAANPDTE-----RPSH 112 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ ++VFS F+ GS+NR+A AA ++AE NPLF+ VGLGKT Sbjct: 113 QLPKPTELNQKYVFSRFVVGSNNRMAHAAALAVAESPGR-----EFNPLFLCGGVGLGKT 167 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA+ + PN ++ Y++ E+F +AIR + + ++ R ++LLIDD+QF Sbjct: 168 HLMQAIAHFRWENSPNSKIFYVSTEHFTNDLIAAIRKDSMQSFREHYRAAEVLLIDDIQF 227 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQ+V A+DRPP ++ L R+ SR G+ + D Sbjct: 228 IEGKEYTQEEFFHTFNTLHEAGKQIVLASDRPPHQISRLQERLCSRFSMGLIADIQPPDL 287 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + + V+ ++A ++ REL+GA ++V + I Sbjct: 288 ETRMAILQK-----KAEYENIRLPRSVVEYIATQYKSNIRELEGALIRVVA---YISISG 339 Query: 390 AEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++ E ++ ++N T + E I VA +N+S DL N R R + RQ+AMYL Sbjct: 340 VPMSVENIAPILNPRTPTVQAAPEIIVTTVADAFNVSVEDLKGNSRRREISWSRQIAMYL 399 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV+++ K+ ++ E D ++ +++ L I+ Sbjct: 400 MRQHTDLSLPRIGEEFGGKDHTTVMYSCDKITQLRERDPSVAQKLSQLSDRIN 452 >gi|157825988|ref|YP_001493708.1| chromosomal replication initiation protein [Rickettsia akari str. Hartford] gi|166214696|sp|A8GP75|DNAA_RICAH RecName: Full=Chromosomal replication initiator protein DnaA gi|157799946|gb|ABV75200.1| chromosomal replication initiation protein [Rickettsia akari str. Hartford] Length = 463 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 171/470 (36%), Positives = 283/470 (60%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NYVNLWSHVAQDLYNHYGETLYNSWFSKVNFIESSLNTVILCAPTNFVRDWIKSKYSMVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ ++I+ + LP +T + I ++ S I Sbjct: 74 LQLFQHYNNTIKSIDIITKE--LPGTTQTVIELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S LD RF F F+ G+ N +A AA+++AE NPLF++ VGLGKTHL+ Sbjct: 124 --STLDVRFTFDNFVVGAPNELAYAAARAVAESSG---AVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ + K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVILFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDNIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 IL+ S+ E + I ++V+ +A + ++ REL+GA N+++ +F +T E Sbjct: 299 LGILE-----SKIEQMNVKIPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTLKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S+RR+R V RPRQ+AMYLSK Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVASRYNIKLSDMSSSRRLREVARPRQIAMYLSKA 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S +IG++FG +DHTTV++A++KVE++LE DI L++E+ LL +++ Sbjct: 413 LTLKSLADIGKKFGKKDHTTVMYAIKKVEELLENDIELREEINLLMKILQ 462 >gi|262377659|ref|ZP_06070879.1| chromosomal replication initiator protein DnaA [Acinetobacter lwoffii SH145] gi|262307418|gb|EEY88561.1| chromosomal replication initiator protein DnaA [Acinetobacter lwoffii SH145] Length = 458 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 149/467 (31%), Positives = 250/467 (53%), Gaps = 14/467 (2%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+ W + L + ++ L P + +I+ +LE IT L Sbjct: 2 LWTDCLNRLRQELSGNVFTMWIRPLVAEELEDSL-RLYAPNPYWTRYIQEHHLELITILA 60 Query: 98 QE-EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 ++ R++ VEILV S + + + T P + + Sbjct: 61 EQLSEGRVRKVEILVDSRPGAILSASEQPATTTAALTSTPMPVPKPKKEKEDSGKNSRRR 120 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ F FS F+EG SN++A + + + NPLF++ GLGKTHL+QA+ Sbjct: 121 QLNPLFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGKTHLMQAV 176 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 NA ++ +PN RV+Y+TAE F+ F S+++ K + R++DLLL+DD+ L GK Sbjct: 177 GNALLQAKPNARVMYMTAESFVQDFVSSLQQGKVEEFKKNCRSLDLLLVDDIHLLAGKEA 236 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D E R I Sbjct: 237 SLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRIEI 296 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L + + E ++++ + +A+ V + REL+GA N++V F + ++ Sbjct: 297 L-----LKKAESNQVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGTPIDLDVVR 351 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L ++ + + E+IQR+V++++ I +L+ +R R RPRQ+AM L++ +T Sbjct: 352 ESLKDVLAIR-ARTISTENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLAMGLARELTG 410 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 SFPEIG FG RDH+TV+HA KV+ + E D ++ + L+RL+ Sbjct: 411 DSFPEIGMAFGGRDHSTVMHACEKVQSLREEDPIFNEDYKNLQRLLQ 457 >gi|21672306|ref|NP_660373.1| chromosomal replication initiator protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|231998|sp|P29434|DNAA_BUCAP RecName: Full=Chromosomal replication initiator protein DnaA gi|2827014|gb|AAC38106.1| DNA biosynthesis initiating protein [Buchnera aphidicola] gi|21622905|gb|AAM67584.1| chromosomal replication initiator protein [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 454 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 150/466 (32%), Positives = 256/466 (54%), Gaps = 19/466 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ RL++++ ++ W + LK + +NI+ + P F+ W+K++YL K+ Sbjct: 5 LWKQCLDRLQSELPSTEFSMWIRSLKA-KLNNNILEIYAPNQFILDWVKDKYLIHFKKIL 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 Q+ + V S EK + K+ +N I + K++ S Sbjct: 64 QDFCGS--NSPFIKFKVYQTSKEKKFKKNILQKIQNLNAKPIWDKIPIFKKS---SHRSN 118 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++ + F FIEG SN++A AA +A+ + Y NPLF++ GLGKTHLL AI Sbjct: 119 INKKHSFENFIEGKSNQLARAAASQVAKNPGNSY-----NPLFLYGGTGLGKTHLLHAIG 173 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + N++++Y+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 174 NGILAYKYNVKIIYMHSERFVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERS 233 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R +IL Sbjct: 234 QEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAIL 293 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADE 395 I + ++ + +++EV +A+ + ++ REL+GA N+++ +F +T E E Sbjct: 294 -----IKKADENNIVLSDEVAFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVRE 348 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++ K + I +IQ+ VA++Y I DLLS RR R+V RPRQ+AM ++K +T Sbjct: 349 ALRDILALQ-EKLVTIANIQKTVAEYYKIKVADLLSRRRSRSVARPRQMAMAMAKELTNH 407 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG F RDHTTVLHA RK+E++ + + +K++ L R +S Sbjct: 408 SLPEIGDAFSGRDHTTVLHACRKIEQLRKENHDIKEDFSNLIRTLS 453 >gi|166032891|ref|ZP_02235720.1| hypothetical protein DORFOR_02612 [Dorea formicigenerans ATCC 27755] gi|166027248|gb|EDR46005.1| hypothetical protein DORFOR_02612 [Dorea formicigenerans ATCC 27755] Length = 462 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 134/476 (28%), Positives = 243/476 (51%), Gaps = 36/476 (7%) Query: 39 FTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + L+ +++ + +W + LK + V+ + ++ V + +I +Y + Sbjct: 8 WPEIIEHLRVEHELLNVSFNTWIKPLKVYDVIDDTAYILVNKDSSVEYIDKKYRLPLMVC 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + ++ + S + + K+T S + Sbjct: 68 IAEITGKEYEIQFV----------------SEDDDKLNEIHNASIDNGQKKKTKSLAEKA 111 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ ++ F TF+ G +N A A+ ++AE Y NPLF++ VGLGKTHL+ +I Sbjct: 112 GLNPKYTFDTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLGKTHLMHSI 166 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC-------ALNLKDSLRNIDLLLIDDMQ 269 A+ + + P +V+Y+T+E F A+R+ LN +D RNID+LLIDD+Q Sbjct: 167 AHFILDKNPKKKVLYVTSETFTNELIDALRNGKTAGNESAMLNFRDKYRNIDVLLIDDIQ 226 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N L KQ++ ++D+PP ++E+L+ R+R+R + G+ + D Sbjct: 227 FIIGKESTQEEFFHTFNHLHTLGKQIIISSDKPPKDIETLESRLRTRFEWGLIADISSPD 286 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-- 386 YE R +IL+ ++ + E K NI +VL ++A V ++ REL+G+ N+L+ + Sbjct: 287 YETRMAILQKKIELDHLE--KYNIKNDVLDYIAANVKSNIRELEGSLNKLIALYKLNNNN 344 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A E L ++++ +++ E I +VA H+ I+ DL S +R + PRQ+ Sbjct: 345 NPIDIALAAEALKDIISSDNRREVTPELILDIVADHFGITVADLKSKKRDSEIAVPRQIC 404 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + MT + IG G +DH+TV + V K+ K +E+D + + ++K+ I+ Sbjct: 405 MYLMRTMTDTALKGIGAVLGGKDHSTVKYGVEKIAKDIESDEMMANTINIIKKKIN 460 >gi|213962527|ref|ZP_03390789.1| chromosomal replication initiator protein DnaA [Capnocytophaga sputigena Capno] gi|213954853|gb|EEB66173.1| chromosomal replication initiator protein DnaA [Capnocytophaga sputigena Capno] Length = 473 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 140/483 (28%), Positives = 237/483 (49%), Gaps = 21/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ E +++ +K+ + + +WF + + N + + VP+ F W++ ++ Sbjct: 1 MKEAAEKVWSKCLEFIKDNITEQQFNTWFVPIVPVELEGNALKIKVPSRFFYEWLEENFI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +V + + + P + K + +K P + I Sbjct: 61 SLLKSAMTFTLGVNSRLVYIVDNPLTKEQLPSTNRPELAKQTLTLATETKDPGLKNPFVI 120 Query: 151 SPV----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ F F+EG+SNR+A +A ++A NPLFI VG Sbjct: 121 PGIREITVDPQLNLHQNFDNFVEGASNRLARSAGMAVANKPG----GTAFNPLFIFGGVG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA-----IRDNCALNLKDSLRNID 261 LGKTHL AI ++ P +V+Y++AE F +F SA N + + ID Sbjct: 177 LGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNTLNDFIHFYQLID 236 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L++DD+QFL GK Q F H+ N L + KQV+ +D+ P +L ++ R+ SR + G+ Sbjct: 237 VLIVDDIQFLSGKVKTQDAFFHIFNHLHQNGKQVILTSDKAPVDLFDIEQRLLSRFKWGL 296 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S L DYE R+ IL+N+ E I E+++ ++A + T+ REL+G N L+ Sbjct: 297 SAELQTPDYETRYKILENKFYNDGAE-----IGEDIIAYLAENIRTNVRELEGVSNSLIA 351 Query: 381 RHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + +F + E+A ++ V + + I+ IQ+++A ++N+ L S R R VV Sbjct: 352 QAAFNRKEYSIELAQSIIDKSVKNNKN-DLTIDHIQQIIADYFNLDIESLHSKTRKRNVV 410 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+AM+ SK T S IG + G RDH TVLHA + VE ++ETD KK V L+ Sbjct: 411 QARQLAMFFSKKYTKNSLSTIGSQIGQRDHATVLHACKTVENLIETDRAFKKYVSDLETK 470 Query: 500 ISE 502 S+ Sbjct: 471 FSD 473 >gi|110832862|ref|YP_691721.1| chromosomal replication initiator protein DnaA [Alcanivorax borkumensis SK2] gi|123345870|sp|Q0VT30|DNAA_ALCBS RecName: Full=Chromosomal replication initiator protein DnaA gi|110645973|emb|CAL15449.1| chromosomal replication initiator protein DnaA [Alcanivorax borkumensis SK2] Length = 474 Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 162/482 (33%), Positives = 264/482 (54%), Gaps = 25/482 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV-HLSVPTNFLKAWIKNRYLETI 93 E ++ +RL++++ + W + L+ + L P F+ W++++YL+ I Sbjct: 2 SEELWQRCLTRLEDELPSQQFNMWIRPLQVAASADGAELTLFAPNRFVVDWVRDKYLDRI 61 Query: 94 TKLFQEEHSRIQ---GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +++ E S +E+ + P+ S S + PI T + + Sbjct: 62 SEVLGEMQSGPLPQLRLEVGSTRASTPAASYFNGSSSSSSNGPITTPAAAPAPRQPESDS 121 Query: 151 SP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P S L++ F FSTF+EG SNR+A AAQ +AE + + NPL + Sbjct: 122 RPQPTSLGGARKHRSNLNTGFTFSTFVEGKSNRMAAAAAQQVAENPA----SHGYNPLLL 177 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ A+ N ++R PN +VVYL +E F+ SA+R+ K R++D Sbjct: 178 YGGVGLGKTHLMHAVGNELLRRNPNAKVVYLHSERFVADMISALRNKTINEFKRFYRSVD 237 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QF GK Q EF H N+LL++ +Q++ D+ P E++ L+ R++SR G+ Sbjct: 238 ALLIDDIQFFAGKEQSQEEFFHTFNALLENGQQIILTCDKFPKEVDGLEERLKSRFGWGL 297 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S P+ + E R +ILK + E+ K+++ + +A+ + ++ REL+GA +++ Sbjct: 298 SQPMEPPELETRVAILKK-----KAEEAKVDLPNDAAFFIAQRIRSNVRELEGALRRVIA 352 Query: 381 RHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 F + + E L L+ +++ I++IQR+VA++Y I NDLLS RR R+V Sbjct: 353 HVRFTGAQIDIGLIKEALKDLIALQ-ARQISIDNIQRIVAEYYKIKINDLLSPRRTRSVA 411 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQVAM LSK +T S PEIG FG RDHTTVLHA RKV ++ E++ ++++ L R Sbjct: 412 RPRQVAMALSKELTSHSLPEIGENFGGRDHTTVLHACRKVLELRESNPEIEEDYLNLLRT 471 Query: 500 IS 501 ++ Sbjct: 472 LT 473 >gi|226952830|ref|ZP_03823294.1| DNA replication initiator protein [Acinetobacter sp. ATCC 27244] gi|294648702|ref|ZP_06726162.1| DNA-directed DNA replication initiator protein [Acinetobacter haemolyticus ATCC 19194] gi|226836451|gb|EEH68834.1| DNA replication initiator protein [Acinetobacter sp. ATCC 27244] gi|292825377|gb|EFF84120.1| DNA-directed DNA replication initiator protein [Acinetobacter haemolyticus ATCC 19194] Length = 466 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 153/473 (32%), Positives = 260/473 (54%), Gaps = 20/473 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V +++ L P + +I++ +LE I+ L Sbjct: 4 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-DDVMRLYAPNPYWTRYIQDNHLELISILA 62 Query: 98 QE-EHSRIQGVEILVRS----VALPSVEKTASSPSITKLSPINTNISKSP--IILGKQTI 150 ++ R++ VEILV S + S + ++ ++ +PI T I K + + Sbjct: 63 EQLSEGRVRQVEILVDSRPGTILASSEQPATTTAALNTSTPIPTKIKKEADLVQPSQNAN 122 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ F FS F+EG SN++A + + + NPLF++ GLGKT Sbjct: 123 KIPKKRQLNPLFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGKT 178 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 179 HLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHL 238 Query: 271 LQGKLIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D Sbjct: 239 LAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDI 298 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R IL + + E+ +++ + +A+ V + REL+GA N++V F + Sbjct: 299 ETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGTAI 353 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM L Sbjct: 354 DLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELIGPKRTRIYARPRQLAMGL 412 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 413 ARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFNEDYKNLLRLLQ 465 >gi|291333918|gb|ADD93598.1| chromosomal replication initiation protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 444 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 145/475 (30%), Positives = 246/475 (51%), Gaps = 38/475 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI----VHLSVPTNFLKAWIKNR 88 +N ++ + L+ ++ D +++W L + V L P +F+K +K Sbjct: 1 MNYQA-WEECRKSLELELNQDEFSTWISPLAYSEEQDEFGMQAVTLLAPNDFIKEHVKQN 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y I + + +++L + P ITK K P + K+ Sbjct: 60 YDSIIKQYLSRS--------LDSENLSLNYDLFNSPKPLITK-----DKSKKIPFLDDKE 106 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L F F TF+EG SN +AL AA+ +A+ Y NPLFI+ VGLG Sbjct: 107 NS-------LFENFTFETFVEGKSNNIALAAAKQVADSPKGAY-----NPLFIYGGVGLG 154 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ A+ N ++ P+ R+VY+ +E F+ +++ K R +D LLIDD+ Sbjct: 155 KTHLMHAVGNKLKEKDPSKRIVYIHSERFVSDMVKSLQLGAINEFKQFYRGVDALLIDDI 214 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF GK Q E H N+LL+ +Q++ DR P E+E L+ R++SRL G+ V + Sbjct: 215 QFFAGKEQSQEELFHTFNALLEGGQQMILTCDRYPKEIEGLEERLKSRLGWGLPVIVEPP 274 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-P 386 + E R +IL + + E+ LN+ ++ ++ + ++ REL+GA ++ FA Sbjct: 275 ELETRVAIL-----LKKAEELNLNMPQDCAFFISERIRSNVRELEGALKRVGANAKFANK 329 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + + E L L+ +++ I++IQ+ V+ ++NI +DLLS++R R++ RPRQ++M Sbjct: 330 EVDLNLIKESLRDLLAIQ-ARQVSIDNIQKTVSDYFNIRLSDLLSSKRNRSLARPRQLSM 388 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIG FG RDHTTVLHA +K+ ++ + L ++ + L R+++ Sbjct: 389 SLAKELTNHSLPEIGDAFGGRDHTTVLHACKKIGELRQGSTELDEDYKNLVRVLT 443 >gi|153854255|ref|ZP_01995554.1| hypothetical protein DORLON_01548 [Dorea longicatena DSM 13814] gi|149753030|gb|EDM62961.1| hypothetical protein DORLON_01548 [Dorea longicatena DSM 13814] Length = 462 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 141/483 (29%), Positives = 251/483 (51%), Gaps = 35/483 (7%) Query: 31 LEVNCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 + + + + L+ +++ + +W Q LK + V+ N V + V N +I+ + Sbjct: 1 MMNTVKEKWPEIIEHLRVEHELSNVSFNTWIQPLKVYDVVDNTVFILVNMNASVEYIEKK 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y + E I G E V + S +L+ I ++ + Sbjct: 61 YQLPLKVCIAE----ITGTEYEVVFI----------SEDDDRLNEIQNMAIEANQKKKSK 106 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + + G L+ ++ F TF+ G +N A A+ ++AE Y NPLF++ VGLG Sbjct: 107 SAAEKAG--LNPKYTFDTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFLYGGVGLG 159 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC-------ALNLKDSLRNID 261 KTHL+ +IA+ + + P +V+Y+T+E F A+++ +D RN D Sbjct: 160 KTHLMHSIAHFILDKNPKKKVLYVTSETFTNELIEALKNGKTAGNESAMSKFRDKYRNND 219 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ Sbjct: 220 VLLIDDIQFIIGKESTQEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGL 279 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + +YE R +IL+ ++ + E K NI +VL ++A V T+ REL+G+ N+L+ Sbjct: 280 IADISSPNYETRMAILQKKIELDHLE--KYNIPNDVLEYIATNVKTNIRELEGSLNKLIA 337 Query: 381 RHSFAPI--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 + + +A E L ++++ +++ E I +V++H+ +S DL N+R + Sbjct: 338 LYKLNNTGSIDIALAAEALKDIISSDNRREVTPELILDIVSEHFGVSIPDLKGNKRNAEI 397 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V PRQ+AMYL + MT S +G G +DH+T+ H + K+E L+ D TL + ++K+ Sbjct: 398 VFPRQIAMYLIRNMTETSLKAVGVILGGKDHSTIKHGIEKIENELKADETLSNTINIIKK 457 Query: 499 LIS 501 I+ Sbjct: 458 KIN 460 >gi|88807751|ref|ZP_01123263.1| chromosomal replication initiation protein [Synechococcus sp. WH 7805] gi|88788965|gb|EAR20120.1| chromosomal replication initiation protein [Synechococcus sp. WH 7805] Length = 464 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 141/475 (29%), Positives = 247/475 (52%), Gaps = 22/475 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +++ +++ V L++ + + +W + + + + L P +F W++ Y Sbjct: 1 MDLTGSELWSKVQQTLQSNLSKPTFETWIRPAQCSAFTDGTLTLLAPNSFASNWLRKNYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII--LGKQ 148 TI + E R V + R V E SP+ + + P + L K Sbjct: 61 GTIADVAGEIVGRPVLVMVEARDV-----EPRGGSPNSQTTAVTAESAPSPPTVEALPKA 115 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + +P L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLG Sbjct: 116 SKAPRRLPGLNMRYVFNRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLG 170 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+ Sbjct: 171 KTHLMQAIGHYRLEIDPEARVFYVSTESFTNDLILAIRRDGMQAFRDRYRAADLILVDDI 230 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + Sbjct: 231 QFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAP 290 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ + E ++ + +++ +++ T++ REL+GA + V FA I Sbjct: 291 DLETRMAILQK-----KAEQERVALPRDLIQYISGRFTSNIRELEGALTRAVA---FASI 342 Query: 388 LTAEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + E ++ ++ +G+ ++ + + V++ + +S +D+ S+ R R V + RQV M Sbjct: 343 TGLPMTVESVAPMLDPSGQGVEVTPQQVIDKVSEVFGVSCDDMRSSSRRRAVSQARQVGM 402 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +L + T S P IG FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 403 FLMRQGTGLSLPRIGDTFGGKDHTTVMYAIEQVEKKLSSDPQLASQVQKVKDLLQ 457 >gi|154243959|ref|YP_001414917.1| chromosomal replication initiation protein [Xanthobacter autotrophicus Py2] gi|226735865|sp|A7IB67|DNAA_XANP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|154158044|gb|ABS65260.1| chromosomal replication initiator protein DnaA [Xanthobacter autotrophicus Py2] Length = 506 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 214/506 (42%), Positives = 298/506 (58%), Gaps = 41/506 (8%) Query: 31 LE--VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 +E + + V RL+ ++G + + SWF R+ + + V LSVPT FLK+WI+ Sbjct: 1 MECATTATTPWERVRQRLREEIGEEKFTSWFARMDLDKLTADAVQLSVPTRFLKSWIQEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPI 143 YL I ++ EE + V++ VR+ VAL + T + +T + I Sbjct: 61 YLPRIADIWAEESGAKRRVDLAVRNAFARPVALKANTVREVVTERTDMHSGDTRQQSARI 120 Query: 144 ILGKQTISP-----------------------------VFGSPLDSRFVFSTFIEGSSNR 174 G+ T + GSPLD+R F TF+ G SN Sbjct: 121 SDGRSTDARGADGRGSDARAVEPRAAAAALSDAVAGDVASGSPLDARLTFETFVVGKSNS 180 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A AA+ +AE S + NPL++HA+VGLGKTHLLQAIA A R YLTA Sbjct: 181 LAFAAAKQVAE--SAPGSAPVFNPLYLHAAVGLGKTHLLQAIARAGAV--GGRRTTYLTA 236 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQV 294 E FM+ F +A++ + A+ KD+LR ID L+IDD+QFL+G +Q EFCH LN+LLD +QV Sbjct: 237 ERFMYGFVAALKTHSAIAFKDALRTIDTLVIDDLQFLKGNNLQQEFCHTLNALLDGGRQV 296 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V AAD P ELE LD R+RSRL GG+ V L + ++R ILK R ++ P + Sbjct: 297 VVAADCLPGELEHLDERVRSRLAGGLVVELAALEEDLRLEILKARYQTLTEQHPGFAVPA 356 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 VL +AR+V SGR+LDGA N+L+ + +T E+A+ + L+ + K++R++D Sbjct: 357 PVLEFLARSVGQSGRDLDGALNKLLAFNQLTGEPVTLEMAENAVKDLIRPTDPKRVRVDD 416 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I R+VAKHYN+SR DLLS RR TVV+PRQ+AMYL+K +T RS PEIGRRFG RDHTTVL Sbjct: 417 ILRVVAKHYNVSRADLLSQRRTATVVKPRQIAMYLAKTLTLRSLPEIGRRFGGRDHTTVL 476 Query: 474 HAVRKVEKMLETDITLKKEVELLKRL 499 HAVRK++ ++ D L +E+E+LKRL Sbjct: 477 HAVRKIDGLVNADRALAEEIEVLKRL 502 >gi|300814770|ref|ZP_07095018.1| chromosomal replication initiator protein DnaA [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511157|gb|EFK38409.1| chromosomal replication initiator protein DnaA [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 451 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 133/476 (27%), Positives = 249/476 (52%), Gaps = 31/476 (6%) Query: 31 LEVNCESIFTIVSSRL-KNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKN 87 ++ + +I+ + + K + Y +WF R+ S + + +SVP+ F++ ++ N Sbjct: 1 MDNDFSTIWELFLKDIEKKSMSSVTYNTWFSRMLPKSWDYENKKIIISVPSQFIRDYLVN 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 L ++ + G++ + ++ + + + Sbjct: 61 NKRHF--DLVKKCLFEVTGIDFDLNIISEDEAKNVVLNKNNDSF---------------- 102 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + L+ ++ F +F+ G SN A A+ ++AE + NPLFI+ VGL Sbjct: 103 --DDNFQSTRLNPKYSFESFVVGKSNEFAHAASLAVAENYEDPRKSYS-NPLFIYGGVGL 159 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI N I + P +++Y+T+E F ++I+ N ++ R +DLLLIDD Sbjct: 160 GKTHLMHAIGNFIINQDPTKKILYVTSEQFTNELINSIQKNKNEEFRNKYRKVDLLLIDD 219 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ K Q EF H N L ++ KQ+V +D+PP E++SL+ R+ SR G+ V +G Sbjct: 220 IQFIADKDRTQEEFFHTFNELHEANKQIVLTSDKPPKEIKSLEDRLISRFAWGLVVDIGQ 279 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ S+ +++E+V+ ++A V ++ REL+GA +++V Sbjct: 280 PDLETRIAILR-----SKANVEGFDVSEDVINYIAENVKSNIRELEGALSRVVAYSKLTS 334 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++ E +L+ + + + K + ++ I+ ++ K ++I+ +D+ S +R R + PRQ+A Sbjct: 335 GDISIENTAIVLADIFESKKKKVINVKLIKEVICKEFDITISDIDSKKRTRQIAYPRQIA 394 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MY+++ +T S P+IG FG RDH+TV+HA K+EK ++ D K +V + + I Sbjct: 395 MYITRQITDLSLPKIGEEFGGRDHSTVIHAYDKIEKDMQEDPVFKIKVNDIIKKIK 450 >gi|28202301|gb|AAO34747.1| chromosomal replication initiator protein dnaA [Clostridium tetani E88] Length = 342 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 130/347 (37%), Positives = 216/347 (62%), Gaps = 12/347 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ AI Sbjct: 5 LNPKYTFDSFVIGNSNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIG 59 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + ++ N++VVY+++E F ++I+D+ ++ RN+D+LLIDD+QF+ GK Sbjct: 60 HYILQNNSNVKVVYVSSEKFTNELINSIKDDKNEEFRNKYRNVDVLLIDDIQFIAGKERT 119 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L ++ KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R +IL Sbjct: 120 QEEFFHTFNALHEANKQIILSSDRPPKEIPTLEDRLRSRFEWGLIADIQAPDFETRMAIL 179 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 K + + LNI EV++++A + ++ REL+GA ++V S ++ ++A E Sbjct: 180 KK-----KADVEHLNIPNEVMVYIATKIKSNIRELEGALIRIVAFSSLTNKEISVDLASE 234 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++++ E+ ++ IE IQ +V+ ++N+ D S+RR R V PRQ+AMYL + +T Sbjct: 235 ALKDIISSKESNQVTIELIQDIVSSYFNLRVEDFKSSRRTRNVAFPRQIAMYLCRKLTDN 294 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S P+IG FG RDHTTV+H K+ L+ D +L+K V L I++ Sbjct: 295 SLPKIGEEFGGRDHTTVIHGYEKISTALKKDDSLQKTVNELTSKINQ 341 >gi|124025331|ref|YP_001014447.1| chromosomal replication initiation protein [Prochlorococcus marinus str. NATL1A] gi|166214689|sp|A2C122|DNAA_PROM1 RecName: Full=Chromosomal replication initiator protein DnaA gi|123960399|gb|ABM75182.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. NATL1A] Length = 464 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 245/468 (52%), Gaps = 17/468 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++T V L+ + Y +W + +F + L P +F W++ Y +TI + Sbjct: 5 DELWTKVQKLLQKNLSKPSYETWIRPAEFFDFKDGCLTLLAPNSFSSDWLRKNYSQTIEE 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + E V I V+ + + S + + I T S++ + KQT F Sbjct: 65 IASETFGHEVKVHIKVKEEFSSNKSNKKKNFSNVEANSIAT--SENSDVKSKQTPIKKFL 122 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGKTHL+Q+ Sbjct: 123 PSLNLRYVFNRFVVGPNSRMAHAAAMAVAEAPGR-----EFNPLFICGGVGLGKTHLMQS 177 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + ++ P +V Y++ E F AIR + ++ R DL+L+DD+QF++GK Sbjct: 178 IGHYRLEIDPGAKVAYVSTETFTNDLIVAIRKDGMQAFRNRYREADLILVDDIQFIEGKE 237 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ +Q+V +DRPPS++ L R+ SR G+ + D E R + Sbjct: 238 YTQEEFFHTFNALHEAGRQIVLTSDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMA 297 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL+ + E ++ + +++ +A T++ REL+GAF + V FA I + Sbjct: 298 ILQK-----KAEHERMRLPRDLIQFIAGRFTSNIRELEGAFTRAVA---FASITGLPMTV 349 Query: 395 ELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E ++ ++ TG+ +++ + + VA+ + ++ ++ S R R V + RQV MYL + T Sbjct: 350 ESVAPMLDPTGQGVEVKPKQVLEKVAEVFGVTEEEMRSPSRRRPVSQARQVGMYLMRHGT 409 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG +DHTTV++A+ +VEK L ++ L +V+ +K L+ Sbjct: 410 DLSLPRIGESFGGKDHTTVMYAIEQVEKKLSSEPQLASQVQKVKDLLQ 457 >gi|282881772|ref|ZP_06290430.1| chromosomal replication initiator protein DnaA [Peptoniphilus lacrimalis 315-B] gi|281298382|gb|EFA90820.1| chromosomal replication initiator protein DnaA [Peptoniphilus lacrimalis 315-B] Length = 451 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 133/476 (27%), Positives = 249/476 (52%), Gaps = 31/476 (6%) Query: 31 LEVNCESIFTIVSSRL-KNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKN 87 ++ + +I+ + + K + Y +WF R+ S + + +SVP+ F++ ++ N Sbjct: 1 MDNDFSTIWELFLKDIEKKSMSSVTYNTWFSRMLPKSWDYENKKIIISVPSQFIRDYLVN 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 L ++ + G++ + ++ + + + Sbjct: 61 NKRHF--DLVKKCLFEVTGIDFDLNIISEDEAKNVVLNKNNDSF---------------- 102 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + L+ ++ F +F+ G SN A A+ ++AE + NPLFI+ VGL Sbjct: 103 --DDNFQSTRLNPKYSFESFVVGKSNEFAHAASLAVAENYEDPRKSYS-NPLFIYGGVGL 159 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI N I + P +++Y+T+E F ++I+ N ++ R +DLLLIDD Sbjct: 160 GKTHLMHAIGNFIINQDPTKKILYVTSEQFTNELINSIQKNKNEEFRNKYRKVDLLLIDD 219 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ K Q EF H N L ++ KQ+V +D+PP E++SL+ R+ SR G+ V +G Sbjct: 220 IQFIADKDRTQEEFFHTFNELHEANKQIVLTSDKPPKEIKSLEERLISRFAWGLVVDIGQ 279 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ S+ +++E+V+ ++A V ++ REL+GA +++V Sbjct: 280 PDLETRIAILR-----SKANVEGFDVSEDVINYIAENVKSNIRELEGALSRVVAYSKLTS 334 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++ E +L+ + + + K + ++ I+ ++ K ++I+ +D+ S +R R + PRQ+A Sbjct: 335 GDISIENTAIVLADIFESKKKKVINVKLIKEVICKEFDITISDIDSKKRTRQIAYPRQIA 394 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MY+++ +T S P+IG FG RDH+TV+HA K+EK ++ D K +V + + I Sbjct: 395 MYITRQITDLSLPKIGEEFGGRDHSTVIHAYDKIEKDMQEDPVFKIKVNDIIKKIK 450 >gi|254430118|ref|ZP_05043821.1| chromosomal replication initiator protein DnaA [Cyanobium sp. PCC 7001] gi|197624571|gb|EDY37130.1| chromosomal replication initiator protein DnaA [Cyanobium sp. PCC 7001] Length = 492 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 142/497 (28%), Positives = 243/497 (48%), Gaps = 41/497 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 E ++ V L+ + + +W + + + + +HL P +F W++ YL+T Sbjct: 2 QQAEELWHQVQQALQARFSKPTFETWIRPARCQGLHGSALHLEAPNSFACGWLRKNYLDT 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVE------------KTASSPSITKLSPINTNISK 140 I + E R V + A P+V A +P + + + Sbjct: 62 IAAVASEIAGRPLQVSVDTAPQAEPAVGLAVGGQQVVVELPGAPAPPYGSATGVPASAMG 121 Query: 141 SPIILGKQTIS--------------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 P G ++ F L+ R+VF+ F+ G ++R+A AA ++AE Sbjct: 122 QPGGNGGAPVAGSAPGPTVHGRGGRQAFAPGLNPRYVFNRFVVGPNSRMAHAAALAVAEA 181 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 NPLFI VGLGKTHL+QAI + ++ P RV Y++ E F AIR Sbjct: 182 PGR-----EFNPLFICGGVGLGKTHLMQAIGHYRLEINPEARVFYVSTETFTNDLIQAIR 236 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + +D R DL+L+DD+QF++GK Q EF H N+L ++ +Q+V A+DRPPS++ Sbjct: 237 KDGMQAFRDRYRAADLILVDDIQFIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQI 296 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 L R+ SR G+ + D E R +IL + E ++ + E++ +A T Sbjct: 297 PRLQERLISRFSMGLIADIQAPDLETRMAILHK-----KAEQEQMALPRELIQFIAGRFT 351 Query: 366 TSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNT-GETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA + V FA I + E ++ +++ G +++ E + V++ + + Sbjct: 352 SNIRELEGALTRAVA---FASITGLPMTVESVAPMLDPAGRDVEVKPEQVLEKVSEVFGV 408 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 +++ S R R V + RQV MYL + T S P IG FG +DH+TV++AV ++E+ L Sbjct: 409 GGDEMRSPSRKRAVSQARQVGMYLMRHSTNLSLPRIGEVFGGKDHSTVMYAVEQIERKLS 468 Query: 485 TDITLKKEVELLKRLIS 501 D L ++V+ ++ L+ Sbjct: 469 ADPALARQVQQVRDLLQ 485 >gi|37521042|ref|NP_924419.1| chromosomal replication initiation protein [Gloeobacter violaceus PCC 7421] gi|61212697|sp|Q7NKK4|DNAA_GLOVI RecName: Full=Chromosomal replication initiator protein DnaA gi|35212038|dbj|BAC89414.1| chromosomal replication initiator protein [Gloeobacter violaceus PCC 7421] Length = 442 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 133/467 (28%), Positives = 233/467 (49%), Gaps = 34/467 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+++ + S LK ++ + +W + + + + P F ++W++ Y I + Sbjct: 2 ETLWDGILSHLKGRLSRPTFETWIKPATAQQFEQDCLIIRTPNPFARSWLQQHYAGAIAQ 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 ++ R V+ +V + +++ P N Sbjct: 62 AGEQVIGRPIQVDFIVSEQSEEALKPVIEREPAPAAPPANVAS----------------- 104 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+S++ FS F+ G++NR+A AA ++AE+ Y NPLF+ VGLGKTHL+QA Sbjct: 105 --LNSKYTFSRFVVGANNRMAHVAALAVAEMPGCNY-----NPLFLCGGVGLGKTHLMQA 157 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + + ++ Y++ E F AIR + ++ R +DLL+IDD+QF++GK Sbjct: 158 IGHYRLDIDTRTKIAYVSTERFANELIEAIRRDAMQTFREHYRRVDLLMIDDIQFIEGKE 217 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ+V A+DRPP + L R+ SR G+ + D E R + Sbjct: 218 YTQEEFFHTFNALYESGKQIVIASDRPPQLIPRLQERLSSRFSMGLITDIQQPDIETRMA 277 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL+ + E + + ++V+ H+A TT+ REL+GA + V S I + Sbjct: 278 ILQK-----KAEYENMFVPQDVIHHIASAYTTNIRELEGALIRAVAYVS---ISGLPMTV 329 Query: 395 ELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E +S +++ T+ ++ E I +V +S D+ S+ R R + + RQ+ MYL + T Sbjct: 330 ETISPILSPPRTRGEITDEAILELVCDELKVSAEDMRSDSRRRDISQARQLCMYLLRKYT 389 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+IG+ G +DHTTVL+A+ K+E+ D +++ ++ L + Sbjct: 390 DLSLPKIGQALGGKDHTTVLYAIDKIEQSKIRDPEVQRLLQRLGNRL 436 >gi|229829518|ref|ZP_04455587.1| hypothetical protein GCWU000342_01610 [Shuttleworthia satelles DSM 14600] gi|229791949|gb|EEP28063.1| hypothetical protein GCWU000342_01610 [Shuttleworthia satelles DSM 14600] Length = 456 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 245/474 (51%), Gaps = 38/474 (8%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVP----TNFLKAWIKNRYLET 92 + + +K + + + +W L+ SV + + + P +I +Y Sbjct: 8 WAHILKTVKQEYNITDISFKTWLAPLEIFSVQKDTLVILFPTDESNQMSLNYISKKYELP 67 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + E + ++ ++ P + +S+ + ++ Sbjct: 68 LKVTIAEITGKEYHLQFIL--------------PGQATNLKPSDVVSQGHRLADRENF-- 111 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ R+ F TF+ G++NR A TA+ ++AE Y NPLFI+ GLGKTHL Sbjct: 112 -LSSHLNPRYTFDTFVVGANNRFAQTASLAVAESPGQAY-----NPLFIYGGPGLGKTHL 165 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC---ALNLKDSLRNIDLLLIDDMQ 269 + AI N ++ P+ +V+Y+T+E F+ +IR+N +D R +D+LLIDD+Q Sbjct: 166 MHAIGNFILQDSPSKKVLYVTSEDFLNEVIESIRNNSSGSMSRFRDKYRTVDILLIDDIQ 225 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H N+L + KQ+V +DRPP E+E+LD RIRSR + G+ +G D Sbjct: 226 FIIGKESTQEEFFHTFNALHSAGKQIVLTSDRPPKEMETLDTRIRSRFEWGLMADVGSPD 285 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 YE R +IL+ R + + ++ +E+L ++A + ++ REL+GA N+L+ + Sbjct: 286 YETRMAILRRRCEMDR-----FSLPDEILDYIASNIKSNIRELEGALNKLIAYSNLEKTT 340 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T EIA L ++++ +++ + I MV++HY IS + ++S R V +PRQ+AMY Sbjct: 341 ITMEIASRELQNIISPDTPREITPQLIIEMVSEHYQISVDQMISKNRSSAVAKPRQIAMY 400 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L K MT IG G RDH+T++H K+ +D L K+++ +++ ++ Sbjct: 401 LCKDMTSSPLEAIGSLLGGRDHSTIIHGANKIADEYNSDEELHKQIDAIRKKLN 454 >gi|226354811|ref|YP_002784551.1| chromosomal replication initiation protein [Deinococcus deserti VCD115] gi|259645247|sp|C1CXJ1|DNAA_DEIDV RecName: Full=Chromosomal replication initiator protein DnaA Length = 459 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 155/471 (32%), Positives = 254/471 (53%), Gaps = 25/471 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + I+ V ++ + Y +WF LK V + L V +F + W++ +Y Sbjct: 1 MRFISQEIWADVLGYVRKNISEVEYHTWFAPLKNLGVQDGSLVLGVRNSFAQEWLRKQYQ 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + ++ V V LP+ + PS +PI+ + +P + Sbjct: 61 GLLEDALRSLGAQHPQVSFQV----LPASQDALLLPSDPPPAPISPGRAPAPPPADNRKT 116 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKT Sbjct: 117 -------LNPKYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLGKT 164 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ A+ + +R P R+ Y++ E F +AIR++ ++ R++DLLL+DD+QF Sbjct: 165 HLMHAVGHYIAERFPEKRIEYVSTETFTNELINAIREDKTTQFRNRYRSVDLLLVDDIQF 224 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ + ++ Sbjct: 225 LAGKERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEF 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +ILK E +++I +EVL +AR VTT+ REL+GA ++V S + Sbjct: 285 ETRVAILK-----MNAEHNRIDIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPF 339 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + +A + LS++ E K + + D+ R VA H+N+ + + + RVR VV PRQVA YL Sbjct: 340 SRAVASKALSNVFAPQEVK-VEMMDVLRQVASHFNMPPDVIRGSGRVREVVVPRQVAQYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + +T S PEIG+ FG RDH+TV+HA+ KV + L D L VE L+R Sbjct: 399 IRDLTDHSLPEIGQFFG-RDHSTVMHAISKVTEQLGKDSELTAAVETLRRK 448 >gi|154491703|ref|ZP_02031329.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC 43184] gi|218264325|ref|ZP_03478182.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii DSM 18315] gi|154087944|gb|EDN86989.1| hypothetical protein PARMER_01314 [Parabacteroides merdae ATCC 43184] gi|218222093|gb|EEC94743.1| hypothetical protein PRABACTJOHN_03873 [Parabacteroides johnsonii DSM 18315] Length = 462 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 124/473 (26%), Positives = 243/473 (51%), Gaps = 14/473 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ ++++ + +K+ V + +WF+ + S N + VP+ F +++ +Y+ Sbjct: 1 MQTEYQTLWNKCLAVIKDIVPEAAFNTWFKPIIPLSYEDNKFTIQVPSQFFYEYLEEKYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + ++ V + + P+ + P + + Sbjct: 61 NVLKVTLYRVIGQGTILNYRIKVVDKVKEDGMITLPTGNDAPRTGKKSADIPSLFESKAR 120 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + S L+ ++ F + EG+SNR+ +++++IA+ NP+F+ + G+GKT Sbjct: 121 Q-DWDSHLNPKYNFDNYFEGTSNRLVRSSSEAIAQEPGK-----TFNPMFVFGASGVGKT 174 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL AI N + P +V+Y++A F ++ AIR N + + +D+L++DD+Q Sbjct: 175 HLCHAIGNRIQEIHPEKKVLYISAHLFTVQYTEAIRKNTTNDFMYFYQGVDVLILDDIQE 234 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q+ F H+ N L KQ++ +D+ P +L+ ++ R+ +RL+ G++ L D Sbjct: 235 LIGKDKTQNTFFHIFNHLHLLGKQLILTSDKAPVDLQGMEERLITRLKWGLTAELDRPDL 294 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPIL 388 ++R ILKN+++ + I ++V +A VT + R+++G L+ +F ++ Sbjct: 295 DLRKKILKNKIS-----HDGVVIPDDVFNFIASNVTENVRDVEGIVASLLAYSTAFNRMI 349 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + +++S +V E K++ +E IQ +V K+YN+ + +N R R +V+ RQV MYL Sbjct: 350 DLPLTKQVVSRVVKL-EKKQVSVESIQDVVCKYYNLELAAIQTNSRKREIVQARQVTMYL 408 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K T SF IG+ G RDH TVLHA + V +ET+ + + VE ++ L+ Sbjct: 409 AKKYTDSSFSHIGKIVGKRDHATVLHACKTVRDQIETNKSFRSSVEEIEALLK 461 >gi|134301170|ref|YP_001121138.1| chromosomal replication initiation protein [Francisella tularensis subsp. tularensis WY96-3418] gi|166201884|sp|A4IVR6|DNAA_FRATW RecName: Full=Chromosomal replication initiator protein DnaA gi|134048947|gb|ABO46018.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. tularensis WY96-3418] Length = 491 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 151/499 (30%), Positives = 244/499 (48%), Gaps = 48/499 (9%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++K + Y +W + + N+ + + K IK++Y I Q Sbjct: 4 WDKCLKKIKKNLSTFEYKTWIKPIHVEQ-NSNLFTVYCNNEYFKKHIKSKYGNLILSTIQ 62 Query: 99 EEHSRIQGVEIL--------------------------VRSVALPSVEKTASSPSITKLS 132 E H +E V K P I+K S Sbjct: 63 ECHGNDLIIEYSNKKFSGEKITEVITAGPQANFFSTTSVEIKDESEDTKVVQEPKISKKS 122 Query: 133 PINTNISKSPI--------ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 S + I K+ FG PL ++VF +F+ G +N++A AA ++ Sbjct: 123 NSKDFSSSQELFGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS 182 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI+ GLGKTHL+QAI N + + PN +++Y +E F+ + ++ Sbjct: 183 INPGKLH-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNS 237 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+ Sbjct: 238 IRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPN 297 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+E L+ R+ SR G++V + + D E R +IL + + D + E +A Sbjct: 298 EIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAEN 352 Query: 364 VTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V T+ REL+GA N+++ F T E+A L ++ KK++I++IQ++VA Y Sbjct: 353 VRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFY 411 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ Sbjct: 412 RIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKL 471 Query: 483 LETDITLKKEVELLKRLIS 501 +++ ++ + ELL IS Sbjct: 472 RQSNTSISDDYELLLNKIS 490 >gi|116332682|ref|YP_794209.1| DNA replication ATPase initiation [Lactobacillus brevis ATCC 367] gi|122270622|sp|Q03UE4|DNAA_LACBA RecName: Full=Chromosomal replication initiator protein DnaA gi|116098029|gb|ABJ63178.1| DNA replication ATPase initiation [Lactobacillus brevis ATCC 367] Length = 452 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 150/468 (32%), Positives = 248/468 (52%), Gaps = 27/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET--IT 94 +++T + + + YA+W + K ++ N + L +P+ + + +++L+ + Sbjct: 6 TLWTDIKALFEENNSKTAYATWIETAKPIALDGNKLTLELPSPLHRDYWTHQHLDQQLVE 65 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +Q H IQ V IL E+ + K +P+ P T + + Sbjct: 66 YAYQAAHEDIQPVLIL-------ENERQQQATLKAKTAPVAAGEPVEP------TPTFMK 112 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+SR+ F TF+ G N++A AA ++E V NPLF + VGLGKTHL+ Sbjct: 113 ETALNSRYTFDTFVIGKGNQMAHAAALVVSEEPG-----VMYNPLFFYGGVGLGKTHLMH 167 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ +P+ +V Y+T+E F F +AI+ + RN+DLLL+DD+QF K Sbjct: 168 AIGNKMLEDRPDTKVKYVTSEAFTNDFINAIQTRTQEQFRQEYRNVDLLLVDDIQFFANK 227 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L D KQ+V +DR P+E+ L R+ SR G+SV + D E R Sbjct: 228 EGTQEEFFHTFNALYDDGKQIVLTSDRLPNEIPKLQDRLVSRFAWGLSVDITPPDLETRI 287 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL+N+ Q ++I ++ L ++A + ++ REL+GA ++ + ++ Sbjct: 288 AILRNKADADQ-----IDIPDDTLSYIAGQIDSNVRELEGALARVQAYSQLMHQPIATDL 342 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L + + I IQ VAK++++S DL +R + +V PRQ+AMYLS+ + Sbjct: 343 AAEALKSLNLANASDAVTIPVIQDRVAKYFDVSLKDLKGKKRKKAIVMPRQIAMYLSREL 402 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P IG FG +DHTTV+HA K+ + L+TD L+K+++ LK + Sbjct: 403 TEASLPRIGNEFGGKDHTTVIHAYDKITESLKTDPQLQKDIDSLKDDL 450 >gi|170764020|ref|ZP_02637629.2| chromosomal replication initiator protein DnaA [Clostridium perfringens B str. ATCC 3626] gi|170710061|gb|EDT22243.1| chromosomal replication initiator protein DnaA [Clostridium perfringens B str. ATCC 3626] Length = 342 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 127/350 (36%), Positives = 214/350 (61%), Gaps = 12/350 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ ++ F +F+ G+SNR A A+ ++AE + Y NPLFI+ VGLGKTHL+ Sbjct: 2 SATLNPKYTFQSFVIGNSNRFAHAASLAVAESPAKAY-----NPLFIYGGVGLGKTHLMH 56 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ P +VVY+++E F +AI+D+ ++ R +D+LLIDD+QF+ GK Sbjct: 57 AIGHYILQENPKAKVVYVSSEKFTNELINAIKDDKNEEFRNKYRKVDVLLIDDIQFIAGK 116 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L + KQ++ ++DRPP E+ +L+ R+RSR + G+ + D+E R Sbjct: 117 ERTQEEFFHTFNALHEENKQIILSSDRPPKEIPTLEDRLRSRFECGLIADIQPPDFETRM 176 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +ILK + + LN+ EV++++A + ++ REL+GA +++ S ++ ++ Sbjct: 177 AILKK-----KADVEGLNVPNEVMVYIATKIKSNIRELEGALIRIIAYSSLTNRDVSVDL 231 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L +++ E+ + ++ IQ VA +YN+ DL S RR R + PRQ+AMYLS+ + Sbjct: 232 ASEALKDIISNKESAPVTVKTIQESVANYYNLRIEDLKSQRRTRNIAYPRQIAMYLSRKL 291 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S P+IG FG RDHTTV+HA K+ + L+TD L+ + + + +++ Sbjct: 292 TDMSLPKIGEEFGGRDHTTVIHAYEKISENLKTDEGLQSMINDITKKLTQ 341 >gi|255320702|ref|ZP_05361879.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SK82] gi|262380667|ref|ZP_06073820.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SH164] gi|255302318|gb|EET81558.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SK82] gi|262297615|gb|EEY85531.1| chromosomal replication initiator protein DnaA [Acinetobacter radioresistens SH164] Length = 460 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 149/469 (31%), Positives = 255/469 (54%), Gaps = 16/469 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +++A W + L + + L P + +I+ +LE IT L Sbjct: 2 LWTDCLTRLRQELSDNIFAMWIRPLVAEELED-TLRLYAPNPYWTRYIQEHHLELITILA 60 Query: 98 QEEH-SRIQGVEILV--RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ R++ VEILV R A+ S + ++ + P + +S+ + Sbjct: 61 EQMSEGRVRKVEILVDSRPGAILSAAEQPATTTAALEHPASMPVSRPKKEKEAEPAKQNK 120 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ F F+ F+EG SN++A + + + NPLF++ GLGKTHL+Q Sbjct: 121 KRLLNPLFTFALFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGKTHLMQ 176 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA ++ +PN RV+Y+TAE F+ F S+++ K + R++DLLL+DD+ L GK Sbjct: 177 AVGNALLQAKPNARVMYMTAESFVQDFVSSLQRGKVEEFKKNCRSLDLLLVDDIHLLAGK 236 Query: 275 LIQH-EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D E R Sbjct: 237 EASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETRI 296 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 IL + + E ++++ + +A+ V + REL+GA N++V F + ++ Sbjct: 297 EIL-----LKKAESNEIDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGTAIDLDV 351 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM L++ + Sbjct: 352 VRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLAMGLAREL 410 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T SFPEIG FG RDH+TV+HA KV+ + D ++ + L RL+ Sbjct: 411 TGDSFPEIGMAFGGRDHSTVMHACEKVQSLRAEDPIFNEDYKNLLRLLQ 459 >gi|53724901|ref|YP_101862.1| chromosomal replication initiation protein [Burkholderia mallei ATCC 23344] gi|52428324|gb|AAU48917.1| chromosomal replication initiator protein DnaA [Burkholderia mallei ATCC 23344] Length = 518 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 144/528 (27%), Positives = 245/528 (46%), Gaps = 87/528 (16%) Query: 50 VGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 + P Y +W + L + N + ++ P F W+K+++ I+ L ++ + V Sbjct: 1 MTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRISDLARDFWNAPIEV 60 Query: 108 EILVRSVA----------------------LPSVEKTASSPSITKLSPINT--------- 136 + ++ A P A +P++ +P Sbjct: 61 QFVLDPKAGQRSPAGATPLAPRAPLPSANPAPVAPGPACAPAVDAHAPAPAGMNAATAAA 120 Query: 137 ----------------------------NISKSPIILGKQTISP-------------VFG 155 +++ G++T P Sbjct: 121 VAAAQAAQAAQANAAALNADEAADLDLPSLTAHEAAAGRRTWRPGAANANSEAADSMYER 180 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKTHL+ A Sbjct: 181 SKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHA 235 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 236 IGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKS 295 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 296 RTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVA 355 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + + ++++E+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 356 IL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELT 410 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 411 KEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 469 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 470 QKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTLK 517 >gi|238926597|ref|ZP_04658357.1| DNA-directed DNA replication initiator protein [Selenomonas flueggei ATCC 43531] gi|238885543|gb|EEQ49181.1| DNA-directed DNA replication initiator protein [Selenomonas flueggei ATCC 43531] Length = 473 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 126/477 (26%), Positives = 232/477 (48%), Gaps = 18/477 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E N S++ V + + W R+ S+ +N + L+V F K +I+ RYL Sbjct: 4 EKNLTSLWQKVLKETDGILPKEAIKQWILRIVPISLENNELVLAVADEFTKQYIEPRYLV 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP------IIL 145 + + + ++V VA + P+ + Sbjct: 64 LLGDAVHQALGAKYKITLIVAPVASEEKDNAEIEPAAPASLKEPAEEAAPAQGSLPLTPP 123 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 +P + L+ ++ F F+ G SN+ A+++A+ NPLFI+ V Sbjct: 124 ETHAAAPDDTTTLNPKYTFEAFVTGRSNQFPYAMAKAVADAPG----LPSHNPLFIYGGV 179 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ A+ + + P RV+Y+ + F F +IR+ ++ +ID+LLI Sbjct: 180 GLGKTHLMHAVGHKILADDPKKRVLYIASTDFTNEFIRSIREKNMDAFREKYYSIDVLLI 239 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF G+ Q EF N L D+ Q++ +DR P +++ L+ R+ SR GG V + Sbjct: 240 DDIQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQDVKGLEDRLISRFAGGAPVDI 299 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 ++E R +IL+ + + ++I +V+ ++A V ++ REL+GA +L+ S Sbjct: 300 QPPEFETRVAILQK-----KAQSEDVDIPADVVTYIASRVDSNIRELEGALTRLIKYAST 354 Query: 385 APILTAEIA-DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + E L + + + +++ +E I+R+V H+ ++ D+ S +R + PRQ Sbjct: 355 MRMPIDETTCVAALGNYLRGEKGRRITMEMIERIVCTHFKVTSEDIRSTKRSNDIAYPRQ 414 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +AMYL +T S+P IG F ++DH+T++HA +K++K++E++ ++ L I Sbjct: 415 IAMYLCHELTDVSWPTIGGFF-NKDHSTIIHAHKKIQKLIESNPATDTLIKSLSTQI 470 >gi|227498788|ref|ZP_03928928.1| chromosomal replication initiator protein [Acidaminococcus sp. D21] gi|226904240|gb|EEH90158.1| chromosomal replication initiator protein [Acidaminococcus sp. D21] Length = 458 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 245/468 (52%), Gaps = 20/468 (4%) Query: 31 LEVN-CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E + S++ + + ++ W + S+ + + L V +F K WI N Y Sbjct: 1 MENDVLSSLWETLLNGDQSIPKMSGCKKWLSQAVPRSLTEDTLLLDVMNDFTKEWIINNY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 E I + + +R +++ +R A+ ++ K+ Sbjct: 61 KEPIEAFLKSQFNRPMTLDVEIR-------PDLANKEEDLFPGHGAAAPKAKEPLIPKKG 113 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 F S L ++VF F+ G+SNR A A++++AE + Y NPLF+++ GLGK Sbjct: 114 PRQDFSSNLSPKYVFENFVIGNSNRFAHAASKAVAEAPAKVY-----NPLFLYSDSGLGK 168 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI N + P ++++Y ++E F ++I++N ++ RNID+LLIDD+Q Sbjct: 169 THLMNAIGNKIHQDHPEMKILYTSSETFTNELINSIQNNATEAFRNKYRNIDVLLIDDIQ 228 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL+ K Q EF H +L + KQ++ ++DR PSEL++L+ R++SR G+ + D Sbjct: 229 FLRKKESTQEEFFHTFETLYKAEKQIIISSDRKPSELDTLEERLKSRFTWGLIADIQPPD 288 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +ILKN +++ + V +A ++T+ REL+GA+ ++ F+ Sbjct: 289 LETRIAILKNM-----ALKDHISVPDSVTNLIASNISTNIRELEGAYTKVRAYSQFSNEP 343 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+A E L L T ++ + IE IQ+ +A +YNI+ NDLLS +R + PRQ+ MY Sbjct: 344 ITEELAIEALKDLNLTPVSRTITIEAIQQYIASYYNITLNDLLSKKRTANITLPRQIGMY 403 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 L++ +T S P IG FG RDHTTVLHA K+ + KE+E Sbjct: 404 LARTLTDLSLPRIGESFGGRDHTTVLHACDKILSKSKEKTEFAKEIEK 451 >gi|14194696|sp|Q9RYE7|DNAA_DEIRA RecName: Full=Chromosomal replication initiator protein DnaA Length = 466 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 151/469 (32%), Positives = 240/469 (51%), Gaps = 16/469 (3%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + I+ V + ++ V Y +WF +K V + L V +F K W ++ YLE + Sbjct: 2 SQEIWADVLAYVRKNVSDLEYTTWFAPVKPLGVQEGSLLLGVRNSFTKDWFRDHYLELLL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + VE V A ++ + + Sbjct: 62 AALRSLGAEHPQVEFQVLPAAQDAL--LLPNDPPPAPEAAAPTPKTKAAPTPPPSTPGDN 119 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 120 RKTLNPKYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLGKTHLMH 174 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ + +R P R+ Y++ E F +AIRD+ ++ R++DLLL+DD+QFL GK Sbjct: 175 AVGHYLAERFPEKRIEYVSTETFTNELINAIRDDKTTQFRNRYRSVDLLLVDDIQFLAGK 234 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L +S KQ++ ++DRPP ++++L+ R+RSR + G+ + +YE R Sbjct: 235 ERTQEEFFHTFNALYESNKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEYETRV 294 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +ILK E + I +EVL +AR VT++ REL+GA ++V S + + Sbjct: 295 AILK-----MNAEQGHITIPQEVLELIARQVTSNIRELEGALMRVVAFASLNNVPFSRAA 349 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + LS++ E K + + D+ R VA HY + + + + R R +V PRQVA YL + + Sbjct: 350 AAKALSNVFAPQEAK-VEMTDVLRQVAAHYGTTPDLIRGSGRARDIVVPRQVAQYLIRAL 408 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S PEIG+ FG RDH+TV+HAV K+ + + D L V L+ I Sbjct: 409 TDHSLPEIGQFFG-RDHSTVMHAVSKITEQMGKDPELAATVNTLRNRIQ 456 >gi|88608587|ref|YP_506152.1| chromosomal replication initiator protein DnaA [Neorickettsia sennetsu str. Miyayama] gi|88600756|gb|ABD46224.1| chromosomal replication initiator protein DnaA [Neorickettsia sennetsu str. Miyayama] Length = 474 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 149/465 (32%), Positives = 263/465 (56%), Gaps = 11/465 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V+ +L+ G +Y SW + + F + V LSVPT F+K WI YL I + Sbjct: 19 WDRVTRKLRKFYGEKIYGSWLKFMSFKEMRCGQVFLSVPTGFIKEWITVNYLGNILGFLR 78 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 E+ I +EI V ++E + + IS + + S S + Sbjct: 79 NENPAITSIEIGVNKEHDRALESDREE---LVAPFVKSKISSEKGRFDRGSFSENLSSSI 135 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D F +F+ G SN +A TA++ +AE + NPLF++ VGLGKTHL+ AI Sbjct: 136 DRSRTFDSFVVGKSNELAFTASKRVAEAVELPISGS--NPLFLYGGVGLGKTHLMHAIVW 193 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQ 277 + RV+YL+AE FM ++ +A+++ ++ K R++D+L++DD+QF+ GK Q Sbjct: 194 HIKANYADRRVIYLSAEKFMHKYITALKNKDMMSFKQIFRSVDVLMVDDVQFISGKESTQ 253 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L++ KQ+V +ADR PS+L+ ++ RI+SRL G+ + +E+R IL+ Sbjct: 254 EEFFHTFNALIEQNKQLVISADRSPSDLQGVEERIQSRLSWGLVADINQTTFELRVGILE 313 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 ++L + + + ++V+ +AR + ++ REL+GA N+++ ++T + A +L Sbjct: 314 SKLEQMKS---DVVVPKKVVEFMARNIVSNVRELEGALNKVIAHSEITGSVVTVDSAKDL 370 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ ++ T + + +E+I V++++ I +DL S RRV+ V RQ+ M+L+K +T RS Sbjct: 371 LADILRTN-SVAVTLENILAKVSEYFGIKISDLKSQRRVKDVAYARQMCMFLAKTLTQRS 429 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +IG+ G RDH TV+H+VRK+E +++ D + ++V +L + ++ Sbjct: 430 LIDIGKFLGGRDHATVIHSVRKIEILIKNDARVAEDVRILTKRLT 474 >gi|118496616|ref|YP_897666.1| chromosomal replication initiator protein [Francisella tularensis subsp. novicida U112] gi|166201883|sp|A0Q3U7|DNAA_FRATN RecName: Full=Chromosomal replication initiator protein DnaA gi|118422522|gb|ABK88912.1| chromosomal replication initiator protein [Francisella novicida U112] Length = 491 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 151/499 (30%), Positives = 244/499 (48%), Gaps = 48/499 (9%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++K + Y +W + + N+ + + K IK++Y I Q Sbjct: 4 WDKCLKKIKKNLSTFEYKTWIKPIHVEQ-NSNLFTVYCNNEYFKKHIKSKYGNLILSTIQ 62 Query: 99 EEHSRIQGVEIL--------------------------VRSVALPSVEKTASSPSITKLS 132 E H +E V K P I+K S Sbjct: 63 ECHGNDLIIEYSNKKFSGKKITEVITAGPQANFFSTTSVEIKDESEDTKVVQEPKISKKS 122 Query: 133 PINTNISKSPI--------ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 S + I K+ FG PL ++VF +F+ G +N++A AA ++ Sbjct: 123 NTKDFSSSQELFGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS 182 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI+ GLGKTHL+QAI N + + PN +++Y +E F+ + ++ Sbjct: 183 INPGKLH-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNS 237 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+ Sbjct: 238 IRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPN 297 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+E L+ R+ SR G++V + + D E R +IL + + D + E +A Sbjct: 298 EIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAEN 352 Query: 364 VTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V T+ REL+GA N+++ F T E+A L ++ KK++I++IQ++VA Y Sbjct: 353 VRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFY 411 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ Sbjct: 412 RIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKL 471 Query: 483 LETDITLKKEVELLKRLIS 501 +++ ++ + ELL IS Sbjct: 472 RQSNTSISDDYELLLDKIS 490 >gi|160872042|ref|ZP_02062174.1| chromosomal replication initiator protein DnaA [Rickettsiella grylli] gi|159120841|gb|EDP46179.1| chromosomal replication initiator protein DnaA [Rickettsiella grylli] Length = 464 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 148/466 (31%), Positives = 251/466 (53%), Gaps = 27/466 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ RL++ + + +W + L+ + L P F+ + R+L I ++ Sbjct: 23 VWQKCLDRLQDYISLQDFNTWIRPLQAEQKEDQL-VLWAPNQFVLHCVNERFLVHINQIL 81 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + V + V S + S I+ + + I GK + + Sbjct: 82 TQLDEAPPEVILRVGS-------------RDNQTSQISPILRNAQGIKGKSRVVKTSSTH 128 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++S F F F+EG SN++A A+ +AE Y NPL ++ VGLGKTHL+ AI Sbjct: 129 INSNFTFINFVEGKSNQLARAASVQVAENPGEAY-----NPLLLYGGVGLGKTHLMHAIG 183 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NA + + P+ +V+YL +E F+ A++ N + K R++D LLIDD+QF GK Sbjct: 184 NAILLKNPHAKVLYLHSERFVADMIKALQTNTINDFKTYYRSLDALLIDDIQFFAGKDRS 243 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+LL+S +Q+V DR P E+ ++ R++SRL G+++ + D E R +IL Sbjct: 244 QEEFFHTFNTLLESQQQIVLTCDRYPKEMSGVEERLKSRLGWGLTIAIEPPDLETRVAIL 303 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 IS+ E K+++ +EV +A+ + ++ REL+G ++V F + +T E+ E Sbjct: 304 -----ISKAEQTKISLPQEVAFFIAKRIHSNVRELEGVLKRVVAYAQFTGLQITLELVRE 358 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 + ++ K + +++I + VA++Y I +DLLS RR ++ R RQ+AM L+K +T Sbjct: 359 AIKDVLALQ-DKLVTVDNIIKTVAEYYKIKVSDLLSKRRTSSLARARQIAMALAKELTNH 417 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PE+GR FG RDHTTVLHA RK++++ +T+ + ++ L R +S Sbjct: 418 SLPELGRAFGGRDHTTVLHAFRKIQELKKTNTGVAEDFINLLRTLS 463 >gi|320332619|ref|YP_004169330.1| Chromosomal replication initiator protein dnaA [Deinococcus maricopensis DSM 21211] gi|319753908|gb|ADV65665.1| Chromosomal replication initiator protein dnaA [Deinococcus maricopensis DSM 21211] Length = 455 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 145/461 (31%), Positives = 248/461 (53%), Gaps = 18/461 (3%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 ++N + Y +WF +K V + L V +F + W + YLE + + + Sbjct: 2 LRYVRNNISEVEYHTWFAPVKPLGVQQGSLVLGVRNSFAQEWFRKHYLELLEDALRSLGA 61 Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 + V V ++ + P ++ +P+ +G L+ ++ Sbjct: 62 QSPQVSFQVLPAVQDAMMLPVNEPEVSPPPRTRALPGPAPLPVGSGENRKS----LNPKY 117 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ A+ + + Sbjct: 118 TFENFVVGPNNNLAHAAALAVAESPGRAY-----NPLFIYGDVGLGKTHLMHAVGHYIAE 172 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 R P+ R+ YL+ E F +AIRD+ ++ R++DLLL+DD+QFL GK Q EF Sbjct: 173 RYPDKRIEYLSTESFTNELINAIRDDKMTQFRNKYRSVDLLLVDDIQFLAGKERTQEEFF 232 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ + ++E R +ILK Sbjct: 233 HTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRVAILK---- 288 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHL 400 E ++I ++VL VAR VT++ REL+GA ++V S + + +A + LS + Sbjct: 289 -MNAEHRHIDIPQDVLEQVARQVTSNIRELEGALMRVVAFSSLNNVPFSRAVAAKALSDV 347 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + + ++D+ R+V + + +S + L R R VV PRQVAMYL + +T S PEI Sbjct: 348 FASQ-EVNVEMKDVLRVVGERFGVSTDILKGAGRARDVVVPRQVAMYLIRELTSHSLPEI 406 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G+ FG RDH+TVLH+++KV + + D L ++ L++++ Sbjct: 407 GQFFG-RDHSTVLHSIQKVTEAVGKDADLTAHIDALRQILQ 446 >gi|315271245|gb|ACO44797.2| putative chromosomal replication initiator protein [Deinococcus deserti VCD115] Length = 456 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 155/467 (33%), Positives = 253/467 (54%), Gaps = 25/467 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + I+ V ++ + Y +WF LK V + L V +F + W++ +Y + Sbjct: 2 SQEIWADVLGYVRKNISEVEYHTWFAPLKNLGVQDGSLVLGVRNSFAQEWLRKQYQGLLE 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + ++ V V LP+ + PS +PI+ + +P + Sbjct: 62 DALRSLGAQHPQVSFQV----LPASQDALLLPSDPPPAPISPGRAPAPPPADNRKT---- 113 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 114 ---LNPKYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLGKTHLMH 165 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ + +R P R+ Y++ E F +AIR++ ++ R++DLLL+DD+QFL GK Sbjct: 166 AVGHYIAERFPEKRIEYVSTETFTNELINAIREDKTTQFRNRYRSVDLLLVDDIQFLAGK 225 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ + ++E R Sbjct: 226 ERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRV 285 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +ILK E +++I +EVL +AR VTT+ REL+GA ++V S + + + Sbjct: 286 AILK-----MNAEHNRIDIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPFSRAV 340 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + LS++ E K + + D+ R VA H+N+ + + + RVR VV PRQVA YL + + Sbjct: 341 ASKALSNVFAPQEVK-VEMMDVLRQVASHFNMPPDVIRGSGRVREVVVPRQVAQYLIRDL 399 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 T S PEIG+ FG RDH+TV+HA+ KV + L D L VE L+R Sbjct: 400 TDHSLPEIGQFFG-RDHSTVMHAISKVTEQLGKDSELTAAVETLRRK 445 >gi|270289892|ref|ZP_06196118.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici 7_4] gi|304385855|ref|ZP_07368199.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici DSM 20284] gi|270281429|gb|EFA27261.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici 7_4] gi|304328359|gb|EFL95581.1| chromosomal replication initiator protein DnaA [Pediococcus acidilactici DSM 20284] Length = 446 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 133/469 (28%), Positives = 236/469 (50%), Gaps = 33/469 (7%) Query: 37 SIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ + + +N + + +W + S+ ++++ + V +N + + +E Sbjct: 6 DLWNHIKNSFENDDSMSKASFGAWVDTAEPISLDNHVMKIKVLSNLHRDYWTKHLMEKFV 65 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + + E + ++ P K + Sbjct: 66 EYAYQFTDQDITPEFVTEDE-------------------FKAQQAQKPQSTDKSSSFSTE 106 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+SR+ F TF+ GS N++A AA ++++ V NPLF + VGLGKTHL+ Sbjct: 107 DTQLNSRYTFDTFVIGSGNQMAHAAAMAVSDEPG-----VLYNPLFFYGGVGLGKTHLMH 161 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ P RV Y+T+E F F ++I+ N + RN+DLLL+DD+QF K Sbjct: 162 AIGHQLLENDPQTRVKYVTSEAFTNDFINSIQKNTTEEFHEKYRNVDLLLVDDVQFFADK 221 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H +L ++ KQ+V +DR P+E+ L R+ SR + G+SV + D E R Sbjct: 222 EATQEEFFHTFEALYNAQKQIVLTSDRLPNEIPKLQERLVSRFKWGLSVDITPPDLETRI 281 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL+ + + + I +E L +A + ++ REL+GA ++ +T ++ Sbjct: 282 AILR-----EKAQADNVEIPDETLDFIANRIDSNIRELEGAMARIQAYAQLQNAAITTDL 336 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L + I IQ VAK++++S DL +R++++V PRQ+AMYLS+ + Sbjct: 337 AADALRSLNFGSNLSHVTIPIIQDKVAKYFHVSVADLKGKKRLKSIVIPRQIAMYLSREL 396 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG +DHTTV+H+ K++ LET+ L ++++ LK + Sbjct: 397 TDNSLPKIGTEFGGKDHTTVIHSCDKIKAALETNSDLARQIDDLKSELK 445 >gi|118578450|ref|YP_899700.1| chromosomal replication initiation protein [Pelobacter propionicus DSM 2379] gi|166214687|sp|A1AJX2|DNAA_PELPD RecName: Full=Chromosomal replication initiator protein DnaA gi|118501160|gb|ABK97642.1| chromosomal replication initiator protein DnaA [Pelobacter propionicus DSM 2379] Length = 450 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 137/467 (29%), Positives = 237/467 (50%), Gaps = 22/467 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ + L+ + + +W Q + + V L+VPT F K WI Y + + Sbjct: 2 HDVWRQATENLEKVMSESDFTTWIQPISYSHADDTTVFLTVPTLFFKEWIDEHYRQVLVG 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + +E++V+ + A I I ++ P Sbjct: 62 ALSVTAGKKYFIELVVQEEDQNAEVPQAEDLIIKGHQEIEQPVTSQPETSS--------- 112 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F F+ G+ N+ A + NPLFI+ VGLGK+HLL A Sbjct: 113 SSLNPKYTFELFVSGTGNQF-----AHAAAMAVANNPADTYNPLFIYGGVGLGKSHLLNA 167 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + PNL V Y +AE FM+ +A+R + RN+D+LL+DD+QF+ GK Sbjct: 168 IGHTIRSSSPNLSVCYCSAEKFMYEMVNALRQKRMDQFRSRFRNLDVLLVDDIQFISGKV 227 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L D KQ+V +D+ P E+ L+ R+RSR + G+ + D E + + Sbjct: 228 GTQEEFFHTFNALYDMQKQIVITSDKFPREISDLEERLRSRFEWGLIADIQPPDLETKIA 287 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIA 393 ILK + E ++ + E+V+ +A + T + REL+G +L S I +T ++A Sbjct: 288 ILKK-----KSEITRIQLPEDVIYFLASSDTRNIRELEGMLIRLGAYSSLQGIPITLDMA 342 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L ++ K + +E IQ++VA+ + + DL S++R++ V+ RQ+A++L + MT Sbjct: 343 RENLKEIIGDR-RKDITVELIQKVVAEQFGLKMADLKSSKRLKNFVQARQIAIWLCRDMT 401 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+P+IG +FG +DH+TV++A +K++ L+ D L + +E +K ++ Sbjct: 402 SFSYPDIGAKFGGKDHSTVIYAAKKIDLALKDDPKLSRIIEDIKLIL 448 >gi|169656467|ref|YP_001427435.2| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica FTNF002-00] gi|61212486|sp|Q5NIQ8|DNAA_FRATT RecName: Full=Chromosomal replication initiator protein DnaA gi|189044725|sp|A7N926|DNAA_FRATF RecName: Full=Chromosomal replication initiator protein DnaA gi|164551535|gb|ABU60479.2| chromosomal replication initiator protein [Francisella tularensis subsp. holarctica FTNF002-00] Length = 491 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 151/499 (30%), Positives = 244/499 (48%), Gaps = 48/499 (9%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++K + Y +W + + N+ + + K IK++Y I Q Sbjct: 4 WDKCLKKIKKNLSTFEYKTWIKPIHVEQ-NSNLFTVYCNNEYFKKHIKSKYGNLILSTIQ 62 Query: 99 EEHSRIQGVEIL--------------------------VRSVALPSVEKTASSPSITKLS 132 E H +E V K P I+K S Sbjct: 63 ECHGNDLIIEYSNKKFSGEKITEVITAGPQANFFSTTSVEIKDESEDTKVVQEPKISKKS 122 Query: 133 PINTNISKSPI--------ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 S + I K+ FG PL ++VF +F+ G +N++A AA ++ Sbjct: 123 NSKDFSSSQELFGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS 182 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI+ GLGKTHL+QAI N + + PN +++Y +E F+ + ++ Sbjct: 183 INPGKLH-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNS 237 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+ Sbjct: 238 IRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPN 297 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+E L+ R+ SR G++V + + D E R +IL + + D + E +A Sbjct: 298 EIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAEN 352 Query: 364 VTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V T+ REL+GA N+++ F T E+A L ++ KK++I++IQ++VA Y Sbjct: 353 VRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFY 411 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ Sbjct: 412 RIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKL 471 Query: 483 LETDITLKKEVELLKRLIS 501 +++ ++ + ELL IS Sbjct: 472 RQSNTSISDDYELLLDKIS 490 >gi|169632030|ref|YP_001705766.1| chromosomal replication initiation protein [Acinetobacter baumannii SDF] gi|226735532|sp|B0VMK0|DNAA_ACIBS RecName: Full=Chromosomal replication initiator protein DnaA gi|169150822|emb|CAO99422.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter baumannii] Length = 465 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 253/474 (53%), Gaps = 21/474 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEVE-GILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS-------VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 ++ R++ VEILV S + TA+ + P P+ + Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSSEQPATTTAALQTAPIPQPAKGKREPEPVANTAVS 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+ +F FS F+EG SN++A + + + NPLF++ GLGK Sbjct: 121 SKSSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 177 THLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIH 236 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D Sbjct: 237 LLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPD 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 297 IETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAP 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM Sbjct: 352 IDLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLAMG 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 411 LARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLLQ 464 >gi|67924996|ref|ZP_00518381.1| chromosomal replication initiator protein, DnaA [Crocosphaera watsonii WH 8501] gi|67853170|gb|EAM48544.1| chromosomal replication initiator protein, DnaA [Crocosphaera watsonii WH 8501] Length = 455 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 240/473 (50%), Gaps = 27/473 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ + I+ V RLK ++ Y +WF +V + + + V F+ ++ Y Sbjct: 1 MTISPQYIWNQVLERLKIRLNSTAYETWFASATVQTVQDDCLIIQVENTFIVNHLRKTYY 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I EE + G + ++ T ++ + N N++ Sbjct: 61 PLI----MEEVEGVVGYPVEIKLT-------TEQEKNLRLIDKNNENLTHKNATNKLIQD 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 SP S L+ + FS F+ G +NR+A A+ +++E NPLF+ VGLGKT Sbjct: 110 SPKL-SQLNPNYNFSRFVVGPTNRMAHAASLAVSESPGR-----EFNPLFLCGGVGLGKT 163 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAIA+ ++ PN V Y++ E F ++IR + ++ R D+LL+DD+QF Sbjct: 164 HLMQAIAHYRLELYPNANVFYVSTEQFTNDLIASIRQDSMEFFREHYRTADILLVDDIQF 223 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++ K Q EF H N+L ++ KQVV A+DRPP + +L R+ SR G+ + + D+ Sbjct: 224 IEDKEYTQEEFFHTFNTLHEAGKQVVIASDRPPQRIPTLQDRLVSRFSMGLIADIQVPDW 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + + +V+ ++A T++ REL+GA + V ++ I Sbjct: 284 ETRMAILQK-----KAEYENIRLPRDVIEYIATNYTSNIRELEGALIRTV---TYISISG 335 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++N + + E I +VA+++++S DL S+ R R + RQ+ MYL Sbjct: 336 LPMNVENIAPVLNPPMEQITISPEIIITIVAENFHLSVEDLKSSSRRREISLARQIGMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTVL++ K+ K+ + D L +++ L I+ Sbjct: 396 MRQHTDLSLPRIGEEFGGKDHTTVLYSCDKISKLQKKDWELSQQLSTLSDRIN 448 >gi|169794207|ref|YP_001712000.1| chromosomal replication initiation protein [Acinetobacter baumannii AYE] gi|184156325|ref|YP_001844664.1| chromosomal replication initiation protein [Acinetobacter baumannii ACICU] gi|213155390|ref|YP_002317435.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB0057] gi|215481762|ref|YP_002323944.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB307-0294] gi|239503909|ref|ZP_04663219.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB900] gi|260558093|ref|ZP_05830304.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii ATCC 19606] gi|301345945|ref|ZP_07226686.1| chromosomal replication initiation protein [Acinetobacter baumannii AB056] gi|301512869|ref|ZP_07238106.1| chromosomal replication initiation protein [Acinetobacter baumannii AB058] gi|301594680|ref|ZP_07239688.1| chromosomal replication initiation protein [Acinetobacter baumannii AB059] gi|332854713|ref|ZP_08435500.1| replication initiator protein DnaA [Acinetobacter baumannii 6013150] gi|332865593|ref|ZP_08436433.1| replication initiator protein DnaA [Acinetobacter baumannii 6013113] gi|332873307|ref|ZP_08441262.1| replication initiator protein DnaA [Acinetobacter baumannii 6014059] gi|226735529|sp|B7GUX5|DNAA_ACIB3 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735530|sp|B7IBH7|DNAA_ACIB5 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735531|sp|B2HZA7|DNAA_ACIBC RecName: Full=Chromosomal replication initiator protein DnaA gi|226735771|sp|B0VAF3|DNAA_ACIBY RecName: Full=Chromosomal replication initiator protein DnaA gi|169147134|emb|CAM84993.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter baumannii AYE] gi|183207919|gb|ACC55317.1| ATPase [Acinetobacter baumannii ACICU] gi|213054550|gb|ACJ39452.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB0057] gi|213987186|gb|ACJ57485.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii AB307-0294] gi|260408447|gb|EEX01754.1| chromosomal replication initiator protein DnaA [Acinetobacter baumannii ATCC 19606] gi|322506194|gb|ADX01648.1| dnaA, Chromosomal replication initiator protein [Acinetobacter baumannii 1656-2] gi|323516070|gb|ADX90451.1| chromosomal replication initiation protein [Acinetobacter baumannii TCDC-AB0715] gi|332727870|gb|EGJ59272.1| replication initiator protein DnaA [Acinetobacter baumannii 6013150] gi|332735245|gb|EGJ66322.1| replication initiator protein DnaA [Acinetobacter baumannii 6013113] gi|332738513|gb|EGJ69385.1| replication initiator protein DnaA [Acinetobacter baumannii 6014059] Length = 465 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 253/474 (53%), Gaps = 21/474 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEVE-GILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS-------VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 ++ R++ VEILV S + TA+ + P P+ + Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSSEQPATTTAALQTAPIPQPAKVKREPEPVANTAVS 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+ +F FS F+EG SN++A + + + NPLF++ GLGK Sbjct: 121 SKSSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 177 THLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIH 236 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D Sbjct: 237 LLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPD 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 297 IETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAP 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM Sbjct: 352 IDLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLAMG 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 411 LARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLLQ 464 >gi|89255450|ref|YP_512811.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica LVS] gi|254366860|ref|ZP_04982898.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica 257] gi|123287421|sp|Q2A640|DNAA_FRATH RecName: Full=Chromosomal replication initiator protein DnaA gi|89143281|emb|CAJ78442.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica LVS] gi|134252688|gb|EBA51782.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica 257] Length = 491 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 151/499 (30%), Positives = 243/499 (48%), Gaps = 48/499 (9%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++K + Y +W + + N+ + + K IK++Y I Q Sbjct: 4 WDKCLKKIKKNLSTFEYKTWIKPIHVEQ-NSNLFTVYCNNEYFKKHIKSKYGNLILSTIQ 62 Query: 99 EEHSRIQGVEIL--------------------------VRSVALPSVEKTASSPSITKLS 132 E H +E V K P I K S Sbjct: 63 ECHGNDLIIEYSNKKFSGEKITEVITAGPQANFFSTTSVEIKDESEDTKVVQEPKILKKS 122 Query: 133 PINTNISKSPI--------ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 S + I K+ FG PL ++VF +F+ G +N++A AA ++ Sbjct: 123 NSKDFSSSQELFGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS 182 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI+ GLGKTHL+QAI N + + PN +++Y +E F+ + ++ Sbjct: 183 INPGKLH-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNS 237 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+ Sbjct: 238 IRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPN 297 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+E L+ R+ SR G++V + + D E R +IL + + D + E +A Sbjct: 298 EIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAEN 352 Query: 364 VTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V T+ REL+GA N+++ F T E+A L ++ KK++I++IQ++VA Y Sbjct: 353 VRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFY 411 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ Sbjct: 412 RIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKL 471 Query: 483 LETDITLKKEVELLKRLIS 501 +++ ++ + ELL IS Sbjct: 472 RQSNTSISDDYELLLDKIS 490 >gi|226735872|sp|A3M0Q4|DNAA_ACIBT RecName: Full=Chromosomal replication initiator protein DnaA gi|193075921|gb|ABO10498.2| DNA replication initiator protein [Acinetobacter baumannii ATCC 17978] Length = 465 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 253/474 (53%), Gaps = 21/474 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEVE-GILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS-------VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 ++ R++ VEILV S + TA+ + P P+ + Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSSEQPATTTAALQTAPIPQPAKVKREPEPVANTAVS 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+ +F FS F+EG SN++A + + + NPLF++ GLGK Sbjct: 121 SKSSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 177 THLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIH 236 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D Sbjct: 237 LLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPD 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 297 IETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGAP 351 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM Sbjct: 352 IDLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELIGPKRTRIYARPRQLAMG 410 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 411 LARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLLQ 464 >gi|115313982|ref|YP_762705.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica OSU18] gi|122325952|sp|Q0BPB6|DNAA_FRATO RecName: Full=Chromosomal replication initiator protein DnaA gi|115128881|gb|ABI82068.1| DNA-directed DNA replication initiator protein [Francisella tularensis subsp. holarctica OSU18] Length = 491 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 150/499 (30%), Positives = 247/499 (49%), Gaps = 48/499 (9%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++K + Y +W + + N+ + + K IK++Y I Q Sbjct: 4 WDKCLKKIKKNLSTFEYKTWIKPIHVEQ-NSNLFTVYCNNEYFKKHIKSKYGNLILSTIQ 62 Query: 99 EEHSRIQGVEILVRSVALPSVE-------------------KTASSPSITKLSPINTNIS 139 E H +E + + + K S + P +N S Sbjct: 63 ECHGNDLIIEYSNKKFSGEKITEVITAGPQANFFSTTSVEIKDESEDTKVVQEPKISNKS 122 Query: 140 KSP---------------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 S +I K+ FG PL ++VF +F+ G +N++A AA ++ Sbjct: 123 NSKDFSSSQELFGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS 182 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI+ GLGKTHL+QAI N + + PN +++Y +E F+ + ++ Sbjct: 183 INPGKLH-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNS 237 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+ Sbjct: 238 IRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPN 297 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+E L+ R+ SR G++V + + D E R +IL + + D + E +A Sbjct: 298 EIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAEN 352 Query: 364 VTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V T+ REL+GA N+++ F T E+A L ++ KK++I++IQ++VA Y Sbjct: 353 VRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFY 411 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ Sbjct: 412 RIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKL 471 Query: 483 LETDITLKKEVELLKRLIS 501 +++ ++ + ELL IS Sbjct: 472 RQSNTSISDDYELLLDKIS 490 >gi|313885387|ref|ZP_07819137.1| chromosomal replication initiator protein DnaA [Eremococcus coleocola ACS-139-V-Col8] gi|312619117|gb|EFR30556.1| chromosomal replication initiator protein DnaA [Eremococcus coleocola ACS-139-V-Col8] Length = 449 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 239/472 (50%), Gaps = 27/472 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + +S + + L++ + Y +W + + ++V K + ++ Sbjct: 1 ME-DMQSFWIEIKDYLRDILSQSTYKNWVDATYPIRFDNRSITIAVANKMTKKYWEDHLA 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + + +S S L T+ + Sbjct: 60 GYVLQYSNRRFGTEYQPIFTIVQDNEENFRPQIASNSEVDLKNTQTDYTTE--------- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ + F F+ G N++A AA ++ E Y NP I+ VGLGKT Sbjct: 111 -----SHLNPNYTFENFVIGEDNKMASVAALAVVESPGKTY-----NPFLIYGGVGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI N R P ++ Y T+E F+ F ++I++ + + R ID+LLIDD+QF Sbjct: 161 HLMQAIGNEIKHRNPGAKIKYATSESFVNDFITSIQNGSQDHFRQMYREIDILLIDDIQF 220 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L K Q EF H N+L ++ KQ+V +DR P+ + +L+ R+ SR + G+S + D Sbjct: 221 LSNKDKTQEEFFHTFNALYNNGKQIVLTSDRLPNNITNLEERLISRFKWGLSTDITPPDL 280 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +IL+ + L+IN E L ++A + ++ REL+GA +++ + + + Sbjct: 281 ETRIAILRK-----KASTDNLDINSETLTYIASHIDSNIRELEGALVRVIAYAAIKGLDI 335 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A E L ++V+ + + ++I VA++YN++ D++ +R + +V PRQ+AMYL Sbjct: 336 TTDLAAEALKNIVDDNQQNDITPKEIIDQVARYYNVTVTDIIGKKRKKEIVMPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+ +T SFP+IG FG ++HTTV+HA K+ + +I LK+++ LK+L+ Sbjct: 396 SRQLTELSFPKIGEEFGHKNHTTVIHAFEKINDEISYNIELKEDINKLKKLL 447 >gi|56707188|ref|YP_169084.1| chromosomal replication initiation protein [Francisella tularensis subsp. tularensis SCHU S4] gi|110669658|ref|YP_666215.1| chromosomal replication initiation protein [Francisella tularensis subsp. tularensis FSC198] gi|254368432|ref|ZP_04984449.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica FSC022] gi|254371402|ref|ZP_04987403.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis FSC033] gi|254372003|ref|ZP_04987496.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. novicida GA99-3549] gi|254375145|ref|ZP_04990625.1| chromosomal replication initiator protein dnaA [Francisella novicida GA99-3548] gi|56603680|emb|CAG44634.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis SCHU S4] gi|110319991|emb|CAL08017.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis FSC198] gi|151569641|gb|EDN35295.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis FSC033] gi|151569734|gb|EDN35388.1| chromosomal replication initiator protein dnaA [Francisella novicida GA99-3549] gi|151572863|gb|EDN38517.1| chromosomal replication initiator protein dnaA [Francisella novicida GA99-3548] gi|157121326|gb|EDO65527.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica FSC022] gi|282158287|gb|ADA77678.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis NE061598] Length = 506 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 151/499 (30%), Positives = 244/499 (48%), Gaps = 48/499 (9%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++K + Y +W + + N+ + + K IK++Y I Q Sbjct: 19 WDKCLKKIKKNLSTFEYKTWIKPIHVEQ-NSNLFTVYCNNEYFKKHIKSKYGNLILSTIQ 77 Query: 99 EEHSRIQGVEIL--------------------------VRSVALPSVEKTASSPSITKLS 132 E H +E V K P I+K S Sbjct: 78 ECHGNDLIIEYSNKKFSGEKITEVITAGPQANFFSTTSVEIKDESEDTKVVQEPKISKKS 137 Query: 133 PINTNISKSPI--------ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 S + I K+ FG PL ++VF +F+ G +N++A AA ++ Sbjct: 138 NSKDFSSSQELFGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS 197 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI+ GLGKTHL+QAI N + + PN +++Y +E F+ + ++ Sbjct: 198 INPGKLH-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNS 252 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+ Sbjct: 253 IRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPN 312 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+E L+ R+ SR G++V + + D E R +IL + + D + E +A Sbjct: 313 EIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAEN 367 Query: 364 VTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V T+ REL+GA N+++ F T E+A L ++ KK++I++IQ++VA Y Sbjct: 368 VRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFY 426 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ Sbjct: 427 RIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKL 486 Query: 483 LETDITLKKEVELLKRLIS 501 +++ ++ + ELL IS Sbjct: 487 RQSNTSISDDYELLLDKIS 505 >gi|299768251|ref|YP_003730277.1| chromosomal replication initiation protein [Acinetobacter sp. DR1] gi|298698339|gb|ADI88904.1| chromosomal replication initiation protein [Acinetobacter sp. DR1] Length = 468 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 152/477 (31%), Positives = 258/477 (54%), Gaps = 24/477 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V I+ L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEVE-GILRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 ++ R++ VEILV S + S + ++ ++ P + + K P + + Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSSEQPATTTAALQTAPPQSIKVKKEPESVSSPHANS 120 Query: 153 VFGSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 V L+ +F FS F+EG SN++A + + + NPLF++ G Sbjct: 121 VVNPKTSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+D Sbjct: 177 LGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVD 236 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 237 DIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVE 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 297 PPDIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFK 351 Query: 386 P-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+ Sbjct: 352 GAPIDLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQL 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM L++ +T SFPEIG FG RDH+TV+HA KV + D ++ + L RL+ Sbjct: 411 AMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVTSLRGEDPIFDEDYKNLLRLLQ 467 >gi|262374719|ref|ZP_06067991.1| chromosomal replication initiator protein DnaA [Acinetobacter junii SH205] gi|262310375|gb|EEY91467.1| chromosomal replication initiator protein DnaA [Acinetobacter junii SH205] Length = 464 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 151/473 (31%), Positives = 253/473 (53%), Gaps = 20/473 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V ++ L P + +I++ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEV-DGVMRLYAPNPYWTRYIQDNHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS------VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ++ R++ VEILV S + T ++ S SP+ + Sbjct: 61 EQLSEGRVRQVEILVDSRPGTILSSSEQPATTTAALSTAVSSPMKVKKEAELVQANPPVS 120 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ F FS F+EG SN++A + + + NPLF++ GLGKT Sbjct: 121 KIPKKRQLNPLFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGKT 176 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+DD+ Sbjct: 177 HLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLVDDIHL 236 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D Sbjct: 237 LAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDI 296 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R IL + + E+ +++ + +A+ V + REL+GA N++V F + Sbjct: 297 ETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRFKGTSI 351 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ+AM L Sbjct: 352 DLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLAMGL 410 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 411 ARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFNEDYKNLLRLLQ 463 >gi|91216500|ref|ZP_01253466.1| chromosomal replication initiation protein [Psychroflexus torquis ATCC 700755] gi|91185294|gb|EAS71671.1| chromosomal replication initiation protein [Psychroflexus torquis ATCC 700755] Length = 476 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 247/485 (50%), Gaps = 23/485 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + S++ + +K+ + Y +WFQ + + N + + VP+ F W++ Y+ Sbjct: 1 MSKSATSVWDNCLTFVKDNISDQAYKTWFQPINAVKLNDNALSIQVPSKFFYEWLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEK--TASSPSITKLSPINTNISKSPIILGKQ 148 + + +E + + ++R + T PS + + + +I + Sbjct: 61 DLLKVALTKEIGKGAKLVYVIRMENAKGNRQPFTEKIPSTQRSNVNSQSIDFPSRQKNPE 120 Query: 149 TISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P S L+S + F F+EG+SNR+A +A+ ++A NPL Sbjct: 121 LRNPFVIPGIRNLKIDSQLNSNYTFDNFLEGTSNRLARSASLAVANKPG----GTSFNPL 176 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I VGLGKTHL AI + P+ V+Y++A+ F + A+ N + + Sbjct: 177 LIFGGVGLGKTHLAHAIGLQVKDKFPDKTVLYISADKFTQQHIDAVSKNNRNDFIHFYQI 236 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D+L++DD+Q + GK Q F H+ N L + KQV+ +D+ P +++ + R+ SR + Sbjct: 237 VDVLIVDDIQLISGKKGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMQDIQQRLLSRFKW 296 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+S L D+E R I+KN+L + + + +E+L +VA +T + REL+GA L Sbjct: 297 GLSAELAQPDFETRIKIIKNKLY-----NDGVEMADEILDYVASRITANIRELEGAIISL 351 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + +F +T ++A++++ + V K + ++DIQ +V+ +++I +L S R R Sbjct: 352 IAHSTFSKKEITIDLAEQIVKNYVKNN-KKPISLDDIQNVVSDYFHIEIEELQSKSRKRN 410 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV+ RQ+AMY +K +T S IGR G RDH+TVLH+ + V + E+D +K ++ L+ Sbjct: 411 VVQARQIAMYFAKEITKTSLTSIGRHIGQRDHSTVLHSCKIVSNLQESDKQYRKFIQDLE 470 Query: 498 RLISE 502 + Sbjct: 471 IKFKQ 475 >gi|320201270|gb|EFW75851.1| Chromosomal replication initiator protein DnaA [Escherichia coli EC4100B] Length = 418 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 123/420 (29%), Positives = 214/420 (50%), Gaps = 22/420 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ +RL++++ ++ W + L+ + N + L P F+ W++++YL I L Sbjct: 4 SLWQQCLARLQDELPATEFSMWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGL 62 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQ 148 E+ + V S+ + +P Sbjct: 63 LTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPA 122 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ GLG Sbjct: 123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGTGLG 177 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL A+ N + R+PN +VVY+ +E F+ A+++N K R++D LLIDD+ Sbjct: 178 KTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDI 237 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 238 QFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPP 297 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-AP 386 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 298 ELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGR 352 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM Sbjct: 353 AITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQMAM 411 >gi|171056693|ref|YP_001789042.1| chromosomal replication initiation protein [Leptothrix cholodnii SP-6] gi|226735826|sp|B1Y547|DNAA_LEPCP RecName: Full=Chromosomal replication initiator protein DnaA gi|170774138|gb|ACB32277.1| chromosomal replication initiator protein DnaA [Leptothrix cholodnii SP-6] Length = 510 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 145/517 (28%), Positives = 238/517 (46%), Gaps = 63/517 (12%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSV----LHNIVHLSVPTNFLKAWIKNRYLET 92 ++ RL ++ + +W + L V +V L VP F WI+ +Y Sbjct: 4 DLWERGCERLAAELPEQQFNTWIRPLPPADVTLAGDGVLVGLRVPNRFKLDWIRAQYGSR 63 Query: 93 ITKLFQEEHSRIQGVEILV----------------------------------------- 111 I E + +E+ + Sbjct: 64 IEATLSELAGKPVRLELSLLPRDAVARAQGMAAAPAAQAGAAPQPTQSPMAIGAALHAAA 123 Query: 112 -----RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 +P+ +A+ + ++ + S + + V L+ F T Sbjct: 124 TARHDPQSVVPTPGGSANGRAAPRVGEPGGPVGTSTLPVAPTLSPAVSRGRLNPALTFDT 183 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 + G +N++A TAA + H Y NPLFI+ VGLGKTHL+ A+ NA I+ P+ Sbjct: 184 LVPGRANQMARTAALHVVGAPGHMY-----NPLFIYGGVGLGKTHLIHAVGNALIRDNPD 238 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 RV+YL AE F+ + LK ++DLLLIDD+QF GK Q EF + Sbjct: 239 ARVLYLHAEQFISDVVRNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKDRTQEEFFNAFE 298 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +LL ++ +D P L +D R+ SR G++V + + EMR +IL + + Sbjct: 299 ALLAKRAHIIMTSDTYPKGLVDIDERLTSRFDAGLTVAIEPPELEMRVAIL-----MKKS 353 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTG 404 + + E+V VA+ V + REL+GA +++ F+ ++ +A E L L++ Sbjct: 354 DAEGSRMPEDVAFFVAKNVRANVRELEGALRKVLAYSRFSHKEISINLAREALKDLLSIQ 413 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ +E+IQ+ VA Y I D+ S +R ++ RPRQ+AMYL+K MT +S PEIG F Sbjct: 414 -NRQVSVENIQKTVADFYKIKIADMYSKKRPASIARPRQIAMYLAKEMTQKSLPEIGELF 472 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDHTTVLHAVRK+ + + L +++ +L++ + Sbjct: 473 GGRDHTTVLHAVRKIGGERQKNTELNQQLHVLEQTLK 509 >gi|193213721|ref|YP_001994920.1| chromosomal replication initiation protein [Chloroherpeton thalassium ATCC 35110] gi|193087198|gb|ACF12473.1| chromosomal replication initiator protein DnaA [Chloroherpeton thalassium ATCC 35110] Length = 496 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 136/492 (27%), Positives = 238/492 (48%), Gaps = 23/492 (4%) Query: 22 PNVDVDKRCLEVNCESIFTIVSSRLKNQV-GPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 P V + + + +++ + + +WF+ + + + + VP+ F Sbjct: 10 PGAPVSHLSEQALAQIAWKKCLDIIRDGLHNLQSFKTWFEPIVPLKLSGQELTIQVPSQF 69 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILV----RSVALPSVEKTASSPSITKLSPINT 136 I+ Y + + E + V P V + + + Sbjct: 70 FYEMIEENYYSLLKRALMEVMGTGAKLRYSVLVQAAQAETPVVARIPEKKGKHTPAALPK 129 Query: 137 NISKSPIILGKQTIS------PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 IS + K+ F S L+ ++ F F++G N +A AA+S++E Sbjct: 130 VISHANGKQTKEAQDLFANNVHRFESYLNPKYRFENFVKGDCNDLAHAAAKSVSETPGKS 189 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 NPL I+ VGLGKTHL+QAI N + + V+Y+++E F F +AI++N A Sbjct: 190 ----SFNPLVIYGGVGLGKTHLIQAIGNHARENNKAKFVMYVSSEKFTIEFVNAIQNNQA 245 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 RN+DLL+IDD+QF + K Q E H+ N+L + KQ+V ++DRP EL+ ++ Sbjct: 246 HEFSAFYRNVDLLIIDDIQFFERKEKTQEEIFHIFNTLHQANKQIVLSSDRPIKELKGIE 305 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR Q G++ L L DYE R +IL+ + E+ ++E ++ +A +T++ R Sbjct: 306 ERLLSRFQWGLTADLQLPDYETRRAILQR-----KLEENSATLDESIIDFIATNMTSNIR 360 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+G +L+ S A + +A +L V ++ + IE +++ V +++ IS ND Sbjct: 361 ELEGCLVKLLATASLNAKSIDLPLAKNILRDSVRER-SQTVTIEMVEKAVCEYFGISAND 419 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + R + + RQ+AMY +K T SF IG FG RDH+TV+HAV ++K + Sbjct: 420 IKGKSRKKEIAFARQMAMYSAKKWTKSSFKTIGLHFGGRDHSTVIHAVNAIDKNADRSEE 479 Query: 489 LKKEVELLKRLI 500 ++ +E L + + Sbjct: 480 VRNTIEELHKRL 491 >gi|326802615|ref|YP_004320433.1| chromosomal replication initiator protein DnaA [Aerococcus urinae ACS-120-V-Col10a] gi|326650687|gb|AEA00870.1| chromosomal replication initiator protein DnaA [Aerococcus urinae ACS-120-V-Col10a] Length = 450 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 135/469 (28%), Positives = 245/469 (52%), Gaps = 25/469 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ +VS + + + +W LK + H+++++ + K I++ Y+ + Sbjct: 4 LQELWQVVSEYFREHLTKGSFDTWILGLKPLRMDHDVLYIEAVSQLHKKHIESNYMMQLQ 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ + R +EI + + + ++ + +P + Sbjct: 64 QVIYDYLGREIRIEITLDN-------------QQAGSNHLDFGPAANPGQAPADNRTANR 110 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ ++ F F+ G N++A AA ++AE Y NPLF + VGLGKTHL+Q Sbjct: 111 HSDLNPKYTFENFVVGEGNKMAHAAALAVAEGPGRDY-----NPLFFYGGVGLGKTHLMQ 165 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ P+ V Y+T+E F F AIR N + + R++D+LL+DD+QF+ K Sbjct: 166 AIGHEVLRTHPDAIVKYVTSETFTNDFIEAIRTNTMPDFHQAYRHVDMLLVDDIQFIGNK 225 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ K +V +DR S++ L+ R+ SR + G+S + D E R Sbjct: 226 QSTQEEFFHTFNALYNNNKHIVLTSDRDASQIPELEDRLVSRFKQGLSTDITPPDLETRI 285 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL+N + + ++I +E L ++A + T+ REL+GA + L+ ++ Sbjct: 286 AILRN-----KAKVNGIDIPDETLSYIAGQIDTNIRELEGALTSVQAYAVMNQEELSPDV 340 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A LS+ + K I +IQ VA +++++ DL +R R +V PRQ+AM+LS+ + Sbjct: 341 AARALSNYRDANTKKVPSIAEIQETVADYFDLTVADLKGKKRKRDIVVPRQIAMFLSREI 400 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG+ FG +DHTTVLHA K+ + +++ +K+ VE ++ L+ Sbjct: 401 TDASLPKIGQEFGGKDHTTVLHAHEKISEAMKSATEIKENVESIQNLLK 449 >gi|325282256|ref|YP_004254797.1| Chromosomal replication initiator protein dnaA [Deinococcus proteolyticus MRP] gi|324314065|gb|ADY25180.1| Chromosomal replication initiator protein dnaA [Deinococcus proteolyticus MRP] Length = 494 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 146/468 (31%), Positives = 250/468 (53%), Gaps = 22/468 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + I++ V + ++N + Y +WF +K V + L V +F + W + YLE + Sbjct: 37 SQEIWSDVLAYVRNNISEVEYHTWFAPVKTLGVREGSLVLGVRNSFAQEWFRKHYLELLE 96 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + V V ++ ++ K++ + SP P Sbjct: 97 DALRSLGAEHPQVSFEVLPAVQEAMILPEAAAPTPKVAAAPQPVRSSP--------DPEL 148 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ ++ F F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 149 SKILNPKYTFENFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLGKTHLMH 203 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ + ++ P R+ Y++ E F ++IRD+ +D R++DLLL+DD+QFL K Sbjct: 204 AVGHYLAEKYPEKRIAYVSTESFTNELINSIRDDKTTQFRDRYRSVDLLLVDDIQFLARK 263 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ++ ++DRPP ++++L+ R+RSR + G+ + ++E R Sbjct: 264 ERTQEEFFHTFNALYENHKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEFETRV 323 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +ILK E +NI +EVL +AR VTT+ REL+GA ++V S + + + Sbjct: 324 AILK-----MNAEQANINIPQEVLELIARQVTTNIRELEGALMRVVAFSSLNNVPFSRAV 378 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + LS++ E ++ + ++ R A+ + ++ + R R +V PRQ+AMYL + + Sbjct: 379 ASKALSNVFAPQEL-QVEMSEVVRAAAQLFEVTTEQIRGTGRARDIVVPRQIAMYLIREL 437 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TP S PEIG+ FG RDH+TV+HAV KV + ++ D + +V L+R + Sbjct: 438 TPHSLPEIGQYFG-RDHSTVMHAVSKVSESIKKDEEMAAQVSRLRRHL 484 >gi|332882720|ref|ZP_08450331.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679222|gb|EGJ52208.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 473 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 140/483 (28%), Positives = 238/483 (49%), Gaps = 21/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++ +K+ + + +WF + ++ + + VP+ F+ W+++ Y+ Sbjct: 1 MEEATKKVWAKCLEFIKDNIDEQPFLTWFAPIVPVTLEGKTLKIKVPSQFVYEWLEDNYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + ++ S+ + + P + K S +K P + I Sbjct: 61 GLLKSAMTYTLGEGARLIYIIDSLVDKKQLPSTNRPELAKQSLTLATEAKDPELKNPFVI 120 Query: 151 SPV----FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ F F+EG SNR+A +A ++A NPLFI VG Sbjct: 121 PGIREITVDPQLNLHQNFDNFVEGESNRLARSAGIAVANKPG----GTAFNPLFIFGGVG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA-----IRDNCALNLKDSLRNID 261 LGKTHL AI ++ P +V+Y++AE F +F SA N + + ID Sbjct: 177 LGKTHLAHAIGVDIKEKYPKKKVLYVSAEKFTQQFISASTAKDKDKNNLNDFIHFYQLID 236 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L++DD+QFL GK Q F H+ N L + KQV+ +D+ P +L ++ R+ SR + G+ Sbjct: 237 VLIVDDIQFLSGKVKTQDAFFHIFNHLHQTGKQVILTSDKAPVDLFDIEQRLLSRFKWGL 296 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S L DY R+ IL+N+ E I+E+++ ++A + T+ REL+G N L+ Sbjct: 297 SAELTTPDYNTRYKILQNKFYTDGAE-----ISEDIIAYLAENIRTNVRELEGVSNSLIA 351 Query: 381 RHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + +F + E+A ++ V + + I+ IQ+++A ++N+ L S R R VV Sbjct: 352 QAAFNRKEYSIELAQSIIEKSVKNSQ-CDLTIDHIQQIIADYFNLDIESLHSKTRKRNVV 410 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+AM+ SK T S IG + G RDH TVLHA + VE ++ETD KK V L+ Sbjct: 411 QARQLAMFFSKKYTKSSLSTIGSQIGQRDHATVLHACKTVENLIETDREFKKYVSDLETK 470 Query: 500 ISE 502 S+ Sbjct: 471 FSD 473 >gi|72381841|ref|YP_291196.1| chromosomal replication initiation protein [Prochlorococcus marinus str. NATL2A] gi|72001691|gb|AAZ57493.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. NATL2A] Length = 466 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 245/468 (52%), Gaps = 17/468 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++T V L+ + Y +W + +F + L P +F W++ Y +TI + Sbjct: 7 DELWTKVQQLLQKNLSKPSYETWIRPAEFFDFKDGCLTLIAPNSFSSDWLRKNYSQTIEE 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + E V I V+ + + S + + I T S++ + KQT F Sbjct: 67 IASEIFGHEVKVCIKVKEEFSSNKSNKKKNYSNVEANSIAT--SENYDVKSKQTQIKKFL 124 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGKTHL+Q+ Sbjct: 125 PSLNLRYVFNRFVVGPNSRMAHAAAMAVAEAPGR-----EFNPLFICGGVGLGKTHLMQS 179 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + ++ P +V Y++ E F AIR + ++ R DL+L+DD+QF++GK Sbjct: 180 IGHYRLEIDPGAKVAYVSTETFTNDLIVAIRKDGMQAFRNRYREADLILVDDIQFIEGKE 239 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ +Q+V +DRPPS++ L R+ SR G+ + D E R + Sbjct: 240 YTQEEFFHTFNALHEAGRQIVLTSDRPPSQIPRLQERLISRFSMGLIADIQAPDLETRMA 299 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL+ + E ++ + +++ +A T++ REL+GAF + V FA I + Sbjct: 300 ILQK-----KAEHERMRLPRDLIQFIAGRFTSNIRELEGAFTRAVA---FASITGLPMTV 351 Query: 395 ELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E ++ ++ TG+ +++ + + VA+ + ++ ++ S R R V + RQV MYL + T Sbjct: 352 ESVAPMLDPTGQGVEVKPKQVLEKVAEVFGVTEEEMRSPSRRRPVSQARQVGMYLMRHGT 411 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG +DHTTV++A+ +VEK L ++ L +V+ +K L+ Sbjct: 412 DLSLPRIGESFGGKDHTTVMYAIEQVEKKLSSEPQLASQVQKVKDLLQ 459 >gi|328675183|gb|AEB27858.1| Chromosomal replication initiator protein DnaA [Francisella cf. novicida 3523] Length = 491 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 149/499 (29%), Positives = 245/499 (49%), Gaps = 48/499 (9%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++K + Y +W + + N+ + + K IK++Y I Q Sbjct: 4 WDKCLKKIKKNLSTFEYKTWIKPIHVEQ-NSNLFTVFCNNEYFKKHIKSKYGNLILSTIQ 62 Query: 99 EEHSRIQGVEI--------------------------LVRSVALPSVEKTASSPSITKLS 132 E H +E + K P I+K S Sbjct: 63 ECHGNDLIIEYSNKKFSGEKITEVITAGPQANFFSTTTIEIKDESEDTKLVQEPKISKKS 122 Query: 133 PINT--------NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 ++ +I K+ FG PL ++VF +F+ G +N++A AA ++ Sbjct: 123 NTKDLSSSQELFGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS 182 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI+ GLGKTHL+QAI N + + PN +++Y +E F+ + ++ Sbjct: 183 INPGKLH-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNS 237 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+ Sbjct: 238 IRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPN 297 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+E L+ R+ SR G++V + + D E R +IL + + D + E +A Sbjct: 298 EIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAEN 352 Query: 364 VTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V T+ REL+GA N+++ F T E+A L ++ KK++I++IQ++VA Y Sbjct: 353 VRTNVRELEGALNRVLTTSKFNYKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFY 411 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I DL SN+R R + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ Sbjct: 412 RIRVKDLTSNQRSRNIARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKL 471 Query: 483 LETDITLKKEVELLKRLIS 501 +++ ++ + ELL IS Sbjct: 472 RQSNTSISDDYELLLDKIS 490 >gi|239813020|ref|YP_002941930.1| chromosomal replication initiation protein [Variovorax paradoxus S110] gi|239799597|gb|ACS16664.1| chromosomal replication initiator protein DnaA [Variovorax paradoxus S110] Length = 459 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 143/469 (30%), Positives = 241/469 (51%), Gaps = 21/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 ES++ +L ++ + +W + L + + + V F WI+ +Y I Sbjct: 8 ESLWQACVDQLAQELSEQQFNTWIKPLTAQVADDLSRMTVFVANRFKLDWIRAQYAGKIA 67 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + ++ + + VE+ + P S T++ + G++ + F Sbjct: 68 AMAEKMYGQPVAVELALAPREAPVR-------SAPVAVLAETDVPRDVAGPGEEPANAGF 120 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+S F T +EG++NR+A AA +A + H Y NPLFI+ VGLGKTHL+ Sbjct: 121 KNRLNSGLTFDTLVEGTANRMARAAAMHVAGMPGHLY-----NPLFIYGGVGLGKTHLMH 175 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + +P+ +V+Y+ AE F+ A + K+ ++DLLLIDD+QF K Sbjct: 176 AVGNRLLADRPDSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFANK 235 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L + R+ SR G++V + + EMR Sbjct: 236 DRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFDSGLTVAIEPPELEMRV 295 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL N+ E + EEV VA+ V ++ REL+GA +++ F ++ + Sbjct: 296 AILINKARAESAE-----MPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIAL 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 351 AREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKEL 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 410 TQKSLPEIGELFGGRDHTTVLHAVRKISGERQQLTELNQQLHVLEQTLK 458 >gi|291280548|ref|YP_003497383.1| chromosome replication initiator protein DnaA [Deferribacter desulfuricans SSM1] gi|290755250|dbj|BAI81627.1| chromosome replication initiator protein DnaA [Deferribacter desulfuricans SSM1] Length = 443 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 137/471 (29%), Positives = 243/471 (51%), Gaps = 33/471 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + I+ V KN + +W + +K + + + L P K W + +YL Sbjct: 1 MGSDKIWEEVLKEAKNHISEQEVNTWLKPIKVGELRGDFIQLIAPNRLYKNWFEEKYLNV 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + K+F E S +E V S K + T S + + Sbjct: 61 VKKIFNETLS----IEAQTIQVVTKSSTKQKKHTAQTVSSSVTID--------------- 101 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 V+ + L+ ++ F F+ G+SN A A ++A+ H Y NPLFI+ VGLGKTHL Sbjct: 102 VYTTNLNKQYTFDNFVVGNSNNFAHAACMAVADGYFHTY-----NPLFIYGGVGLGKTHL 156 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ N +++ P LRV+Y+++E F SA++ ++ R +D+LL DD+QFL Sbjct: 157 MHAVGNRLLEKFPKLRVLYISSENFTNEMISALKSKKMDEFREKYRKVDVLLFDDVQFLA 216 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK EF + NSL DS KQ++ +D+ P+E+ ++ R+ +R G+ + E Sbjct: 217 GKQRSTEEFFYTFNSLYDSQKQIILTSDKTPAEIPEMEERLTTRFAWGLIADIQPPSVEE 276 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTT-SGRELDGAFNQLVFRHSF-APILT 389 + +IL + + E +++NE+V + +A + + + REL GA +L SF +T Sbjct: 277 KTAIL-----MKRAELMNIDLNEKVALFIAENLKSDNVRELIGALIRLSAYSSFNGEPIT 331 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A + L + + K + + I ++V +++N+ ++L S +R +++ PRQ+AMYL Sbjct: 332 IELAKKTLDRFL-IKKDKIITFDTILKVVTEYFNVKLSELKSKKRTKSIAYPRQIAMYLM 390 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + S EIG FG RDH+TVLH++ +EK L+ D L++ +++L++ + Sbjct: 391 REKLNCSLSEIGEIFGGRDHSTVLHSINSIEKKLKKDKELQETIKILEKSL 441 >gi|293611384|ref|ZP_06693680.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826256|gb|EFF84625.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325123493|gb|ADY83016.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Acinetobacter calcoaceticus PHEA-2] Length = 469 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 156/478 (32%), Positives = 260/478 (54%), Gaps = 25/478 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+A W + L V + L P + +I+ +LE I+ L Sbjct: 2 LWTDCLTRLRQELSDNVFAMWIRPLVAEEVE-GTLRLYAPNPYWTRYIQENHLELISILA 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINT--------NISKSPIIL 145 ++ R++ VEILV S L S E+ A++ + + +P + +IS SP Sbjct: 61 EQLSEGRVRQVEILVDSRPGSILSSGEQPATTTAALQTAPQQSIKVKKEPDSISSSPTTN 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 L+ +F FS F+EG SN++A + + + NPLF++ Sbjct: 121 SVVNPKTPKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPT 176 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ K + R++DLLL+ Sbjct: 177 GLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKVEEFKKNCRSLDLLLV 236 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+ L GK EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + Sbjct: 237 DDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGV 296 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R IL + + E+ +++ + +A+ V + REL+GA N++V F Sbjct: 297 EPPDIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVRELEGALNKVVAISRF 351 Query: 385 AP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + ++ E L ++ + + +E+IQR+V++++ I +L+ +R R RPRQ Sbjct: 352 KGAPIDLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKELVGPKRTRIYARPRQ 410 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L++ +T SFPEIG FG RDH+TV+HA KV + E D ++ + L RL+ Sbjct: 411 LAMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPIFDEDYKNLLRLLQ 468 >gi|317509427|ref|ZP_07967045.1| chromosomal replication initiator protein DnaA [Segniliparus rugosus ATCC BAA-974] gi|316252256|gb|EFV11708.1| chromosomal replication initiator protein DnaA [Segniliparus rugosus ATCC BAA-974] Length = 500 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 136/478 (28%), Positives = 238/478 (49%), Gaps = 23/478 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVY---------ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 ++I+ V ++L ++ + + +W K S+ +SVP++F Sbjct: 30 DAIWEEVLAQLSDETAAEAFGHPPLTKQQRAWLPLAKPVSLGEGFALISVPSSFAADAFD 89 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 I + + + + + S + S +P + + P + Sbjct: 90 RGLRAPIAAALRHILGKEIELNLRIASQSQESALPNEPAPVVVETDGAAAEEQAPPQLSV 149 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + S L++R+ F TF+ G+SNR A A +++E + Y NPLFI G Sbjct: 150 VAPATDTTTS-LNARYTFDTFVIGASNRFAHAATFAVSEAPARAY-----NPLFIWGDSG 203 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL A + + + RV Y++ E F F +++RD+ + K R++DLLL+D Sbjct: 204 LGKTHLLHAAGHYTQRLFSGFRVKYVSTEEFTNDFINSLRDDRRVAFKQRYRDVDLLLVD 263 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK IQ EF H N+L +S KQ+V +DRPP +L +L+ R+R+R + G+ + Sbjct: 264 DIQFIAGKEGIQEEFFHTFNTLHNSNKQIVITSDRPPKKLAALEDRLRTRFEWGLITDVQ 323 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 + E R +IL+ + I L++ ++V +A + + REL+GA ++ S Sbjct: 324 PPELETRIAILRKKANID-----GLDVPDDVAELIASRIERNIRELEGALIRVTAFASLN 378 Query: 386 -PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 LTA +A+ +L LV T ++ + I A++++ + +L + R + + RQ+ Sbjct: 379 HQKLTAALAEMVLRDLVPDSPTLEISVSVILGATAEYFSTTIEELCGPAKTRPLAQARQI 438 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL + +T S P+IG+ FG RDHTTV++A +KV K L + +V L + + Sbjct: 439 AMYLCRELTDLSLPKIGQAFG-RDHTTVMYAEKKVRKELAERRQVYDQVHELTARVRQ 495 >gi|158422638|ref|YP_001523930.1| chromosomal replication initiation protein [Azorhizobium caulinodans ORS 571] gi|158329527|dbj|BAF87012.1| chromosomal replication initiator protein [Azorhizobium caulinodans ORS 571] Length = 444 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 206/449 (45%), Positives = 290/449 (64%), Gaps = 18/449 (4%) Query: 67 VLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP 126 + + V LSVPT FLKAWI++ YL+ +++L++EE V+++VR+ +V A++ Sbjct: 1 MTGSAVQLSVPTRFLKAWIQDHYLDRLSELWREESG-TTRVDLVVRTAVARTVPLKAANA 59 Query: 127 SITKLSPI------------NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 +S + ++ Q GSPLD+R F TF+ G SN Sbjct: 60 PREIVSERPVVAPTAAAPARSQPVAAPTAPASAQPADVAAGSPLDARLTFETFVVGKSNT 119 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A AA+ +AE + NPL++HA+VGLGKTHLLQA+A A R RVVYLTA Sbjct: 120 LAHAAARQVAE--AVPGAAPLFNPLYMHAAVGLGKTHLLQAVAWAGAAR--GRRVVYLTA 175 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQV 294 E FM+ F +A++ + A+ KD+LR+ID L+IDD+QFL GK +Q EFCH LN+L+D+ +QV Sbjct: 176 ERFMYGFVAALKSHAAIAFKDALRSIDTLVIDDLQFLTGKNMQQEFCHTLNALMDAGRQV 235 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V AADRPPSEL++LD R+RSRL GG+ V L + ++R ILK R ++ + Sbjct: 236 VVAADRPPSELDALDDRVRSRLAGGLVVELAPLEEDLRAQILKTRSVSLSEQHRGFAVPS 295 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 VL +AR V TSGR+LDGA N+L+ + +T E+A+ + LV + K++R++D Sbjct: 296 AVLEFLARHVGTSGRDLDGALNKLLAVNKLTGEPVTLEMAETAVKDLVRPCDPKRVRVDD 355 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I R+VAKHYN++R DLLS RR VV+PRQ+AMYL+K +T RS PEIGRRFG RDHTTVL Sbjct: 356 ILRVVAKHYNVTRADLLSQRRTANVVKPRQIAMYLAKTLTLRSLPEIGRRFGGRDHTTVL 415 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLISE 502 HAVRK++ ++ TD L E+E LKRL++E Sbjct: 416 HAVRKIDGLIATDRALADEIETLKRLVAE 444 >gi|196249894|ref|ZP_03148590.1| chromosomal replication initiator protein DnaA [Geobacillus sp. G11MC16] gi|196210770|gb|EDY05533.1| chromosomal replication initiator protein DnaA [Geobacillus sp. G11MC16] Length = 351 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 135/344 (39%), Positives = 209/344 (60%), Gaps = 12/344 (3%) Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 S + + S L+ ++ F TF+ GS NR A A+ ++AE + Y Sbjct: 4 PSSAKKQRKPYEEANDFPQSMLNPKYTFDTFVIGSGNRFAHAASLAVAEAPAKAY----- 58 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NPLFI+ VGLGKTHL+ AI + I+ P+ +VVYL++E F F +AIRDN + ++ Sbjct: 59 NPLFIYGGVGLGKTHLMHAIGHYVIEHNPSAKVVYLSSEKFTNEFINAIRDNRPDDFRNK 118 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 RN+D+LLIDD+QFL GK Q EF H N+L + +KQ+V ++DRPP E+ +L+ R+RSR Sbjct: 119 YRNVDVLLIDDIQFLAGKEQTQEEFFHTFNTLHEESKQIVISSDRPPKEIPTLEDRLRSR 178 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G+ + D E R +IL+ + + +I EV++++A + ++ REL+GA Sbjct: 179 FEWGLITDITPPDLETRIAILRK-----KAKAEGFDIPNEVMLYIANQIDSNIRELEGAL 233 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 ++V S +TA++A E L ++ + + K + I+DIQR+V +H+NI D + +R Sbjct: 234 IRVVAYSSLINKEITADLAAEALKDIIPSAKPKVITIQDIQRVVGQHFNIKLEDFKAKKR 293 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 ++V PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA K Sbjct: 294 TKSVAFPRQIAMYLSRELTDCSLPKIGDEFGGRDHTTVIHAHEK 337 >gi|33866070|ref|NP_897629.1| chromosomal replication initiation protein [Synechococcus sp. WH 8102] gi|61212711|sp|Q7U605|DNAA_SYNPX RecName: Full=Chromosomal replication initiator protein DnaA gi|33639045|emb|CAE08051.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8102] Length = 465 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 145/475 (30%), Positives = 249/475 (52%), Gaps = 21/475 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + E +++ V L+ ++ + ++ + + + L P F ++ + L Sbjct: 1 MVLTGEELWSKVREGLQTKLSKPTFETFIRPTACSGFANGELRLLAPNPFAGVRLREQLL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRS-VALPSVEKTASSPSITKLSPINTNIS-KSPIILGKQ 148 +IT+L E V +L S V P V + P +P ++ + +S + Sbjct: 61 PSITQLASEACGGPVQVVVLADSAVVSPGVTNQDADPPEPASAPGDSAAARESAPSRSPR 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + P L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLG Sbjct: 121 RVLP----GLNPRYVFGRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLG 171 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI + ++ P+ RV Y++ E F +IR + +D R DLLL+DD+ Sbjct: 172 KTHLMQAIGHYRLEIDPSARVSYVSTETFTNDLIDSIRKDGMKAFRDRYRAADLLLVDDI 231 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK Q EF H N+L ++ KQVV A+DRPPS++ L R+ SR Q G+ + Sbjct: 232 QFIEGKEYTQEEFFHTFNALHEAGKQVVIASDRPPSQISRLQQRLISRFQMGLIADIQAP 291 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ + E ++ + +++ ++A T++ REL+GA + V FA I Sbjct: 292 DLETRMAILQK-----KAEQERMALPRDLIHYLAGRFTSNIRELEGALTRAVA---FASI 343 Query: 388 LTAEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + E ++ ++ TG+ + + + V++ ++++ ++LS+ R R V + RQV M Sbjct: 344 TGLPMTVESVAPMLDPTGQGVDVTPQQVIDKVSEVFDVTAEEMLSSTRRRAVSQARQVGM 403 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL + T S P IG FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 404 YLMRQGTDLSLPRIGDTFGGKDHTTVMYAIEQVEKKLASDPQLAGQVQKVKDLLQ 458 >gi|315441697|ref|YP_004074576.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. Spyr1] gi|315260000|gb|ADT96741.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. Spyr1] Length = 492 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 141/490 (28%), Positives = 245/490 (50%), Gaps = 38/490 (7%) Query: 37 SIFTIVSSRLKNQ-------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +I+ V + L + P +W + ++ + LSVPT F++ I+ Sbjct: 13 AIWDNVVTELNGTGGTQNGSLTPQQ-RAWLKLVRPLVITEGFALLSVPTPFVQNEIERHL 71 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-------- 141 E I + + VE+ VR + + + P +T+ Sbjct: 72 REPIVAALSRQLGQ--RVELGVRIADPAADDVNDGAAVTASPVPADTDEVDDDLAARASA 129 Query: 142 ----PIILGKQTISPVFGS---PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 P + S S L+ R+ F TF+ G+SNR A A+ +IAE + Y Sbjct: 130 EESWPSYFNRAKTSAEDDSLSVNLNRRYTFETFVIGASNRFAHAASLAIAEAPARAY--- 186 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLFI GLGKTHLL A N + + P +RV Y++ E F F +++RD+ + K Sbjct: 187 --NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRRASFK 244 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + R+ID+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R Sbjct: 245 RTYRDIDVLLVDDIQFIEGKDGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLR 304 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +R + G+ + + E R +IL+ + + +L++ ++VL +A + + REL+G Sbjct: 305 TRFEWGLITDVQPPELETRIAILRK-----KAQMDRLDVPDDVLELIASRIERNIRELEG 359 Query: 374 AFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A ++ S + +A+ +L L++ T ++ I A+++ S ++L Sbjct: 360 ALIRVTAFASLNKTSIDKSLAEIVLRDLISDPGTMQISTAAIMAATAEYFETSVDELRGP 419 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A +K+ + + Sbjct: 420 GKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAEKKIRAEMAERREVFDH 478 Query: 493 VELLKRLISE 502 V+ L I + Sbjct: 479 VKELTTRIRQ 488 >gi|255016564|ref|ZP_05288690.1| chromosomal replication initiation protein [Bacteroides sp. 2_1_7] gi|256842198|ref|ZP_05547702.1| chromosomal replication initiator protein DnaA [Parabacteroides sp. D13] gi|256736082|gb|EEU49412.1| chromosomal replication initiator protein DnaA [Parabacteroides sp. D13] Length = 471 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 129/479 (26%), Positives = 241/479 (50%), Gaps = 15/479 (3%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 +K ++ + ++++ + +K+ V + +WF + S + VP+ F +++ Sbjct: 3 EKENMQTDYQTLWNKCLAVIKDIVPKAAFDTWFVPIVPLSYEDKKFTIQVPSQFFYEYLE 62 Query: 87 NRYLETITKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 +Y+ + + I I+V +V+ A + S + +K+P Sbjct: 63 EKYVNVLKVTLYRVIGQGTILNYRIMVDKTTGGTVDYPAENASTAVKKVTPKDANKAPNP 122 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 T L+ ++ F + EG+SN++ TA +++A+ NPLFI Sbjct: 123 F-MTTAPQDLDPQLNPKYNFDNYFEGTSNKLVRTAGEAVAQNPGK----TTFNPLFIFGP 177 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G+GKTHL AI + P +V+Y+++ F +F AIR N + + +NID+LL Sbjct: 178 SGVGKTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLNFYQNIDVLL 237 Query: 265 IDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+Q L G Q+ F H+ N L KQ++ +D+PP +L+ ++ R+ +RL+ G++ Sbjct: 238 LDDIQELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERLITRLKWGLTAE 297 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH- 382 L D ++R ILKN++ + I +EV +A VT + R+L+G L+ Sbjct: 298 LSRPDLDLRKKILKNKIN-----HDGIMIPDEVFNFIANNVTENVRDLEGILVSLMANAV 352 Query: 383 SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + + ++S V E K++ ++ IQ +V K++N+ ++ + +N R R +V+ R Sbjct: 353 INNREIDLPLTKRVVSQAVRL-EKKQISVQMIQEIVCKYFNLEQSVIQTNSRKREIVQAR 411 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+ MYL+K T SF IG+ G +DH TVLHA + ++ +ET + + VE ++ L+ Sbjct: 412 QITMYLAKKYTDSSFSHIGKIVGKKDHATVLHACKTIKDQIETSKSFRSSVEEIEVLLK 470 >gi|167759577|ref|ZP_02431704.1| hypothetical protein CLOSCI_01934 [Clostridium scindens ATCC 35704] gi|167662804|gb|EDS06934.1| hypothetical protein CLOSCI_01934 [Clostridium scindens ATCC 35704] Length = 461 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 144/478 (30%), Positives = 247/478 (51%), Gaps = 35/478 (7%) Query: 36 ESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + + L+ +++ + +W Q LK + V+ N V + V N +I+ +YL + Sbjct: 5 QEKWPEIIEHLRIEHELSNVSFTTWIQPLKVYDVIDNTVFILVNMNASVEYIEKKYLLPL 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E I G E V + S KL I ++ +T + Sbjct: 65 KVCIAE----ITGTEFEVMFI----------SEDDDKLDEIQNMAIEASQKKKTKTAAEK 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 G L+ ++ F TF+ G +N A A+ ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 111 AG--LNPKYTFDTFVVGGNNNFAHAASLAVAESPGEVY-----NPLFIYGGVGLGKTHLM 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN-------CALNLKDSLRNIDLLLID 266 +IA+ + + +V+Y+T+E F A+++ +D RN D+LLID Sbjct: 164 HSIAHFILDKNAKKKVLYVTSETFTNELIEALKNGRTAGNESAMSKFRDKYRNNDVLLID 223 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N L S KQ++ ++D+PP ++E+L+ R+R+R + G+ + Sbjct: 224 DIQFIIGKESTQEEFFHTFNHLHTSGKQIIISSDKPPKDIETLEARLRTRFEWGLIADIS 283 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 DYE R +IL+ ++ + E K NI +VL ++A + T+ REL+G+ N+L+ + Sbjct: 284 APDYETRMAILQKKIELDHLE--KYNIPRDVLQYIAENIKTNIRELEGSLNKLIALYKLN 341 Query: 386 P--ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 ++ +A E L +V++ +K+ E I +V+ H+ IS DL SN+R + PRQ Sbjct: 342 NNDVIDISLASEALKDIVSSQNNRKVTPELILDIVSDHFGISIADLKSNKRSADIANPRQ 401 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++MYL + MT IG G +DH+TV + V K+ ++ + TL + ++K+ I+ Sbjct: 402 ISMYLIRTMTEVPLKGIGIILGGKDHSTVKYGVEKITNEMKRNETLSNTINIIKKKIN 459 >gi|95929986|ref|ZP_01312726.1| chromosomal replication initiator protein DnaA [Desulfuromonas acetoxidans DSM 684] gi|95133955|gb|EAT15614.1| chromosomal replication initiator protein DnaA [Desulfuromonas acetoxidans DSM 684] Length = 444 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 247/468 (52%), Gaps = 30/468 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 E+ + + L+ ++ Y++W + +KF + N +++SV F+K WI+ Y + I Sbjct: 2 SENFWQDLKKILQKKLNKQHYSTWIEPIKFDEIEGNTINISVSNKFIKDWIEKNYKDLIL 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ I G+ I + +K + + Sbjct: 62 IEAKKISRDIDGINIKTDKTIKKTFKKDKEE-----------------VKKEENNNFKNT 104 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 ++ + FS FI GSSN+ + A + NPLFI+ VGLGKTHL+ Sbjct: 105 NLNINPEYTFSKFISGSSNQF-----AAAAAMAVANNPATIYNPLFIYGGVGLGKTHLIN 159 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N IK ++V Y ++E F ++IR ++ R+ID+LLIDD+QF+ GK Sbjct: 160 AIGNEIIKNNKKIKVSYYSSEKFTNELINSIRYGKMDEFRNKFRSIDVLLIDDVQFIAGK 219 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H NSL +S KQ+V +D+ P E+ L+ R+RSR + G+ + D E + Sbjct: 220 ERTQEEFFHTFNSLYESHKQIVVTSDKFPKEIPGLEERLRSRFEWGLIADIQPPDIETKQ 279 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ ++ E + + +EV + ++ +V ++ REL+G ++ S ++ E+ Sbjct: 280 AILE-----AKAEQNNIILPQEVALFLSNSVISNIRELEGYLVRIGAYSSLTSTPISIEM 334 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A +L ++ K++ IEDIQ+ V+ H+NI +++ S++RV+ +V PRQ+AMYL + + Sbjct: 335 AKNILKDII-IESNKELTIEDIQKKVSNHFNIKISEIKSSKRVKNLVIPRQIAMYLCRQL 393 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S+PEIG FG +DH+TV+HA++K+EK +E D L+ ++ +K + Sbjct: 394 TSCSYPEIGDHFGGKDHSTVIHAIKKIEKNIENDSYLRSTIKTIKNTL 441 >gi|312128810|ref|YP_003996150.1| chromosomal replication initiator protein dnaa [Leadbetterella byssophila DSM 17132] gi|311905356|gb|ADQ15797.1| chromosomal replication initiator protein DnaA [Leadbetterella byssophila DSM 17132] Length = 465 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 144/462 (31%), Positives = 247/462 (53%), Gaps = 21/462 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ++ ++ V + +WF+ + + +++ + + VP+ F W++N Y++ + Sbjct: 8 DVAQVWKDCLMVIREHVTEQSFKTWFEPIIPYKLINKRLIIQVPSQFFYEWLENNYVKIL 67 Query: 94 TKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 K + +E I++ S + +K +P I K+P + K + Sbjct: 68 RKALDYAIGKDGQLEYTIIIDSGGQKAAQKKVETPKEDSRV-----IPKNPFEI-KTSSD 121 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +F S L+ + F ++EGS NR+A A+ ++A+ S NPL I+ VGLGKTH Sbjct: 122 IIFDSQLNKNYRFENYVEGSCNRLARAASVAVAQKPS----VTAFNPLMIYGDVGLGKTH 177 Query: 212 LLQAIANASIKRQPNLR-VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 L+QAI N + N + V+Y+++E F +F +AIRDN + + +D+L+IDD+QF Sbjct: 178 LVQAIGNYIEDQPGNNKLVLYVSSEKFTSQFINAIRDNSLQDFMNFYMMVDVLIIDDIQF 237 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q F H+ N L S KQ+V +DRPP EL ++ R+ SR + G++ + + D Sbjct: 238 LAGKEKTQETFFHIFNHLHQSGKQIVMTSDRPPRELSGMEDRLLSRFKWGLTTDIQIPDL 297 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +I++N+LA + E ++ EV+ ++A V ++ REL+G N L+ + + Sbjct: 298 ETRMAIIQNKLATEKAE-----MDMEVVEYLANCVDSNVRELEGVLNSLIVDSALLQRKI 352 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 E+A + LV + K + I+ I +V H+NI D+ R+R VV PRQ+AM+L Sbjct: 353 DIELAKYRIKSLVEESQ-KAISIDKIIDVVTSHFNIKVADIKGKTRLREVVLPRQIAMFL 411 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 +K T S IG FG RDH+TV+HA++ + + D L+ Sbjct: 412 TKEYTELSLKAIGYHFGGRDHSTVIHAIQTINDLQNQDRELQ 453 >gi|319790695|ref|YP_004152335.1| chromosomal replication initiator protein dnaa [Variovorax paradoxus EPS] gi|315593158|gb|ADU34224.1| chromosomal replication initiator protein DnaA [Variovorax paradoxus EPS] Length = 459 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 143/469 (30%), Positives = 241/469 (51%), Gaps = 21/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 ES++ +L ++ + +W + L + + + V F WI+ +Y I Sbjct: 8 ESLWQACVDQLAQELSEQQFNTWIKPLTAQVADDLSRMTVFVANRFKLDWIRAQYAGKIA 67 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + ++ + + VE+ + P S T++ + G++ + F Sbjct: 68 AMAEKMYGQPVAVELALAPREAPVR-------SAPIAVMTETDVPRDVAGPGEEPAAAGF 120 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+S F T +EG++NR+A AA +A + H Y NPLFI+ VGLGKTHL+ Sbjct: 121 KNRLNSGLTFDTLVEGTANRMARAAAMHVAGMPGHLY-----NPLFIYGGVGLGKTHLMH 175 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + +P+ +V+Y+ AE F+ A + K+ ++DLLLIDD+QF K Sbjct: 176 AVGNRLLADRPDSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFANK 235 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L + R+ SR G++V + + EMR Sbjct: 236 DRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFDSGLTVAIEPPELEMRV 295 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL N+ E + EEV VA+ V ++ REL+GA +++ F ++ + Sbjct: 296 AILINKARAESAE-----MPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIAL 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 351 AREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKEL 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 410 TQKSLPEIGELFGGRDHTTVLHAVRKISGERQQLTELNQQLHVLEQTLK 458 >gi|289642466|ref|ZP_06474611.1| chromosomal replication initiator protein DnaA [Frankia symbiont of Datisca glomerata] gi|289507725|gb|EFD28679.1| chromosomal replication initiator protein DnaA [Frankia symbiont of Datisca glomerata] Length = 500 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 138/501 (27%), Positives = 237/501 (47%), Gaps = 29/501 (5%) Query: 17 IAEKTPNVDVDKRCLEVNCESIFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHNIVHLS 75 A+ + + E + +++ + + + + +W + + ++ + L+ Sbjct: 5 SADPSAGMSGRVPVEEPDLSAVWGQAVAGVADGTLSAQQ-RAWLRLTRPLGLVQDTALLA 63 Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS--------------VEK 121 P F K + +R ++ + R V + V + P V Sbjct: 64 APNEFTKDLLDSRLRPFLSTALSTAYGREIRVAVTVEHLPDPEPMTGPIQLPLPTSPVSP 123 Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 +++P+++ S +T +P + + L+ R+VF TF+ G SNR A Sbjct: 124 VSATPAVSAASAADTARI-TPGLGRDPAPRSYEPTRLNPRYVFETFVIGDSNRFPHAA-- 180 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 V NPLFI+ GLGKTHLL AI + ++K P RV Y+++E F F Sbjct: 181 ---AVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYTLKLYPESRVKYVSSEEFTNDF 237 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADR 300 ++IRD+ + R+ D+LL+DD+QFL+ K Q EF H N L D+ KQ+V ++DR Sbjct: 238 INSIRDDRQQAFQRRYRDTDVLLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDR 297 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P +L +L+ R+RSR + G+ + D E R +IL + A + L + +VL ++ Sbjct: 298 SPKQLSALEDRLRSRFEWGLITDVTPPDLETRIAILSKKAATER-----LPVPGDVLEYI 352 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A + + REL+GA ++ S + +A+ +L L+ ++ I A Sbjct: 353 ATHIERNIRELEGALIRVAAFASLNKSHVDRTLAEIVLRDLIPDAADPEITAAAIMNATA 412 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++ +S DL R R +V RQ+AMYL + +T S P+IG+ FG RDHTTV+HA RK+ Sbjct: 413 TYFGVSMEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQHFGGRDHTTVMHADRKI 472 Query: 480 EKMLETDITLKKEVELLKRLI 500 ++ + +V L I Sbjct: 473 RGLMAERRAIYNQVTELTNRI 493 >gi|291457888|ref|ZP_06597278.1| DNA replication initiator protein, ATPase [Oribacterium sp. oral taxon 078 str. F0262] gi|291419432|gb|EFE93151.1| DNA replication initiator protein, ATPase [Oribacterium sp. oral taxon 078 str. F0262] Length = 454 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 139/469 (29%), Positives = 251/469 (53%), Gaps = 35/469 (7%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + ++ +++ V P Y +W + L+ + + + P +I+ RY + Sbjct: 12 WEMILEYVRDNFDVMPVSYKTWLKPLELCDFIDGELIIIAPDQVFCQYIEKRYSTILKVS 71 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 +E I G+ +R + V N + + + + + + Sbjct: 72 IEE----ISGISSEIRLITAEEVR--------------NYHKAGEKKLTEEDFPQILKKA 113 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ R+ F +F+ GSSN +A A+ ++AE Y NPL+I+ GLGKTHL+Q+I Sbjct: 114 NLNPRYTFDSFVVGSSNNLAHAASLAVAESPGEIY-----NPLYIYGGAGLGKTHLMQSI 168 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQG 273 A+ +K P + Y+T+E F+ F +IR+ + + R++D+LLIDD+QF+ G Sbjct: 169 AHFILKSNPQSNIRYVTSETFINEFVDSIRNKNNLSPAEFRKNYRDLDVLLIDDIQFIIG 228 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ +Q++ A+D+PP ++++L+ R+RSR + G+ V + + DYE R Sbjct: 229 KEGTQEEFFHTFNTLYENKRQIIIASDKPPRDIDNLEDRLRSRFEVGLIVDIQMPDYETR 288 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ ++E +I+ EV+ ++A + ++ REL+GA ++V +T E Sbjct: 289 MAILRK-----KEELEGYSIDNEVIKYIATNIKSNVRELEGALTKIVAMSRLEKKDVTLE 343 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ELL +++ K++ + I +VA+H+N++ DL S R+ + +V PRQ+AMYL + Sbjct: 344 LAEELLKDHISSEAPKEVTAQLIISLVAEHFNLNDGDLSSQRKNKEIVLPRQIAMYLCRE 403 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MT +G G RDHTT++H K+ L T+ LK +E L++ I Sbjct: 404 MTESPLKAVGELLGGRDHTTIMHGHDKISTELRTNEQLKSTIEALRKKI 452 >gi|118594214|ref|ZP_01551561.1| dnaA; chromosomal replication initiator protein [Methylophilales bacterium HTCC2181] gi|118439992|gb|EAV46619.1| dnaA; chromosomal replication initiator protein [Methylophilales bacterium HTCC2181] Length = 445 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 140/472 (29%), Positives = 238/472 (50%), Gaps = 31/472 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLE 91 + + + + S + ++ Y +W + L + +S P F+ W+K R + Sbjct: 1 MTSKETWDLCLSFCEKELSKQQYTTWIKPLNGEINEKLKQLVISAPNQFVLQWVKERLND 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + L + ++ I + V A S + +N + Sbjct: 61 KLCSLLSD-NANISSIVYTVIKKTKGPASLEAPKASEEAVPKTKSNKTN----------- 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ F F F+ G +N++A AA+ IAE Y NPLFI+ VGLGKTH Sbjct: 109 -----GLNKSFNFENFVTGKANQLACAAARQIAEKPGTTY-----NPLFIYGGVGLGKTH 158 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI N QPN +V YL AE ++ A + + K + ++DLLLIDD+QF+ Sbjct: 159 LMHAIGNHLKAIQPNAKVKYLHAERYVHDVVKAYENKDFDSFKKNYHSLDLLLIDDIQFI 218 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF + N+L+++ KQ++ D P E+ +D R+R+R G++V + + E Sbjct: 219 AKKNRTQEEFFYAFNTLIENKKQIIITCDSYPKEIVGVDERLRTRFSWGLTVSIDPPELE 278 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 MR +IL + + + K+ ++EEV VA+ + ++ REL+GA N++V +F + Sbjct: 279 MRVAIL-----LKKALEHKIKLSEEVAFFVAKQIRSNVRELEGALNRIVAMSNFTGKPID 333 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L+ +++ +E+IQ+ VA +Y I +D+ S +R R RPRQ+AM L+ Sbjct: 334 LGLAKESLKDLIAVR-GRQISVENIQKTVADYYKIKISDIHSKKRSRNFSRPRQIAMSLT 392 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T SFPEI FG R HTTV+HA ++E + D + +++ L +++ Sbjct: 393 RELTNLSFPEIAEAFGGRHHTTVMHACDEIESLRLGDQGIGQDLGFLTQVLK 444 >gi|145221421|ref|YP_001132099.1| chromosomal replication initiation protein [Mycobacterium gilvum PYR-GCK] gi|145213907|gb|ABP43311.1| chromosomal replication initiator protein DnaA [Mycobacterium gilvum PYR-GCK] Length = 492 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 141/490 (28%), Positives = 245/490 (50%), Gaps = 38/490 (7%) Query: 37 SIFTIVSSRLKNQ-------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +I+ V + L + P +W + ++ + LSVPT F++ I+ Sbjct: 13 AIWDNVVTELNGTGGTQNGSLTPQQ-RAWLKLVRPLVITEGFALLSVPTPFVQNEIERHL 71 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-------- 141 E I + + VE+ VR + + + P +T+ Sbjct: 72 REPIVAALSRQLGQ--RVELGVRIADPAADDVNDGAAVTAASVPADTDEVDDDLAARASA 129 Query: 142 ----PIILGKQTISPVFGS---PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 P + S S L+ R+ F TF+ G+SNR A A+ +IAE + Y Sbjct: 130 EESWPSYFNRAKTSAEDDSLSVNLNRRYTFETFVIGASNRFAHAASLAIAEAPARAY--- 186 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLFI GLGKTHLL A N + + P +RV Y++ E F F +++RD+ + K Sbjct: 187 --NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRRASFK 244 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + R+ID+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R Sbjct: 245 RTYRDIDVLLVDDIQFIEGKDGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLR 304 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +R + G+ + + E R +IL+ + + +L++ ++VL +A + + REL+G Sbjct: 305 TRFEWGLITDVQPPELETRIAILRK-----KAQMDRLDVPDDVLELIASRIERNIRELEG 359 Query: 374 AFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A ++ S + +A+ +L L++ T ++ I A+++ S ++L Sbjct: 360 ALIRVTAFASLNKTSIDKSLAEIVLRDLISDPGTMQISTAAIMAATAEYFETSVDELRGP 419 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A +K+ + + Sbjct: 420 GKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAEKKIRAEMAERREVFDH 478 Query: 493 VELLKRLISE 502 V+ L I + Sbjct: 479 VKELTTRIRQ 488 >gi|169335349|ref|ZP_02862542.1| hypothetical protein ANASTE_01761 [Anaerofustis stercorihominis DSM 17244] gi|169258087|gb|EDS72053.1| hypothetical protein ANASTE_01761 [Anaerofustis stercorihominis DSM 17244] Length = 456 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 134/468 (28%), Positives = 254/468 (54%), Gaps = 23/468 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQ-RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ L++++ V+ +F+ + + ++ L VP K ++ +Y + Sbjct: 6 ELWNNALEYLEDELSDFVFKEYFETSITPLAYENDTFFLQVPDEGNKILLEGQYAVLVEN 65 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + R V+ +V S ++ ++ I+ + P + + Sbjct: 66 ALKYYTQRYIKVKFVVAS---------SNDMVYSENEAIDEIAAAEPKPSVEYNVYNTSY 116 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + ++ F +F+ G +NR A A+ ++A+ + Y NPLFI+ VGLGKTHL+ A Sbjct: 117 IQFNPKYTFDSFVVGPNNRFAHAASLAVADAPAKKY-----NPLFIYGGVGLGKTHLMHA 171 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IA +++ P +VV L++E F+ F AI++ + ++ RN D+LLIDD+QF+ GK Sbjct: 172 IAQHILRKDPTKKVVLLSSEQFLNEFLDAIQNKTNVQFRNKYRNADVLLIDDIQFIAGKN 231 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q+EF H N+L S KQ++ +D+PP E+ L+ R+RSR G+ + + D+E R + Sbjct: 232 ETQNEFFHTFNALQGSNKQIILTSDKPPKEIPHLEDRLRSRFSLGLICDISMPDFETRLA 291 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+ + ++ ++ E+L ++A + ++ REL+G +++ + F LT ++ Sbjct: 292 ILRK-----KAKEENYQVSNEILNYIAENIESNIRELEGLLLKVMALNEFYNKPLTLDLV 346 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L +++ KK+ ++ I ++V +YNIS+ D+LS RR + + PRQ++MYLS+ +T Sbjct: 347 KKQLKDIIDIS-DKKISMDLITKVVCDYYNISKADILSKRRTKNIAFPRQISMYLSRELT 405 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG +G RDH+TV+H K+++ L+T+ TL++E++ + I Sbjct: 406 DSSLPAIGDYYGGRDHSTVIHGYDKIKEELKTNGTLEEEIKKITLEIK 453 >gi|167748043|ref|ZP_02420170.1| hypothetical protein ANACAC_02781 [Anaerostipes caccae DSM 14662] gi|317472418|ref|ZP_07931743.1| chromosomal replication initiator protein DnaA [Anaerostipes sp. 3_2_56FAA] gi|167652523|gb|EDR96652.1| hypothetical protein ANACAC_02781 [Anaerostipes caccae DSM 14662] gi|316900138|gb|EFV22127.1| chromosomal replication initiator protein DnaA [Anaerostipes sp. 3_2_56FAA] Length = 447 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 133/479 (27%), Positives = 246/479 (51%), Gaps = 42/479 (8%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK---AWI 85 ++ E+I+ V +L+ + + +W + L V + + LS+ +NF +I Sbjct: 1 MKKKIEAIWDDVLLKLEQEHDISSAAINAWIKPLNIKEVKDDQIVLSLNSNFDARGIHFI 60 Query: 86 KNR-YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 +++ Y I+ Q+ + + ++ + + + Sbjct: 61 ESKMYDFYISLAIQDITGKKYEISFVLEEAKKKKAPASRTDTQLQD-------------- 106 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + L+ R+ F +F+ G++N++A A ++AE + Y NPLF++ Sbjct: 107 ----------SNNLNPRYTFDSFVVGTNNQMAHAACIAVAEAPAEAY-----NPLFLYGG 151 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHL+ +IA+ ++ L+V+Y+T+E F +AI N L++ R ID+LL Sbjct: 152 AGLGKTHLMHSIAHYIMENNSKLKVLYVTSEDFTNEVINAIHHNKQEELRNKYRTIDVLL 211 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF+ GK Q EF H N+L +S Q++ ++D+PP E+E+L+ R+R+R G++ Sbjct: 212 IDDIQFIIGKDSTQQEFFHTFNALYNSKSQIIISSDKPPKEIETLEERLRTRFGCGLTAD 271 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + DYE R +IL+ + E + I++ + ++A + ++ REL+GA N++ Sbjct: 272 IQPPDYETRIAILRK-----RAELDHIYIDDAIFDYIASNIKSNIRELEGALNKIRVYSK 326 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + ++A L LV+ K+ + I VA+H+NI D++S +R + PR Sbjct: 327 LEKRPIDLDLAKIALKDLVDNDTVVKITPDLIITTVAEHFNIQPADIISKKRSHDIAYPR 386 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q+ MYL K +T SF +IG G RDH+TV+H K+EK L+ D +L ++++ + ++ Sbjct: 387 QICMYLCKKLTDTSFVKIGEYLGKRDHSTVIHGSEKIEKDLQKDSSLSTTLDVIIKKMN 445 >gi|284047389|ref|YP_003397728.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] gi|283951610|gb|ADB46413.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] Length = 462 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 149/476 (31%), Positives = 238/476 (50%), Gaps = 21/476 (4%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + N I+ + + L + W ++ N + L VP +F K ++ +Y Sbjct: 1 MMTKNLAQIWAEMLAALSASFEGRSWKIWLDAAHPRTLEENTLSLDVPNDFTKNTLQEKY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L + + + + V+I V A +P+ P P Q Sbjct: 61 LPIMEESLSQICGKPMKVQIDVVETAKEGPSLFPDAPAQPAPEPAAVQPEPQPAAKPAQE 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 F S L ++ F FI G SN A + +A + Y NPLF+++ GLGK Sbjct: 121 ----FDSHLSPKYTFDNFIRGKSNEEAFNFSMGVANAPAKSY-----NPLFLYSDPGLGK 171 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI N K+ P ++++Y ++E F AI+ N ++ RNID+LLIDD+Q Sbjct: 172 THLMNAIGNYIHKKFPQMKILYTSSETFTNELIGAIQHNTNEAFRNKYRNIDVLLIDDIQ 231 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL+ K Q EF H +L + KQ++ ++DRPP EL++L+ R+ SR G+ + + D Sbjct: 232 FLRKKESTQEEFFHTFEALKQADKQIIISSDRPPKELDTLEERLTSRFMQGLIIEINHPD 291 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PI 387 +E R +IL++ E L EV+ +A V T+ REL+GA+ ++ + Sbjct: 292 FETRSAILRSM-----AEKDHLEFPLEVIQLIATNVKTNIRELEGAYTKVHAFANLNHQP 346 Query: 388 LTAEIADELLSHL-VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E+A + L L + + K + +E IQ +VA Y I DL + +R R++ PRQ+AM Sbjct: 347 VTMELARKALKDLDMGSAVDKVITVEAIQELVASRYKIRVEDLKAKKRTRSIAYPRQIAM 406 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE----VELLKR 498 YL++ +T S P IG FG RDHTTVLHA K+ + + D L+++ VE LK+ Sbjct: 407 YLTRELTDLSLPRIGECFGGRDHTTVLHACDKISEDKKNDANLERQLAKLVEDLKK 462 >gi|299135923|ref|ZP_07029107.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX8] gi|298602047|gb|EFI58201.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX8] Length = 474 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 144/476 (30%), Positives = 242/476 (50%), Gaps = 30/476 (6%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + L+ ++ + +W + +F + +++ +P+ + +RY + I++ Sbjct: 14 WVRILGALEKKINRQSFETWLKPTRFSHITDRTLYVRIPSAEF-EHVGDRYADLISEAVD 72 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP------------IILG 146 + V V P A +P ++ +P + Sbjct: 73 NLGLELDQVIFQV----PPPDPNAARLREDGGFAPQPSHSLNAPRSLRNGAPTGNGVGPE 128 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + + L+ R+ F +F+ GS N+ A AAQ++AE S Y NPLF++ VG Sbjct: 129 QSRFDWNTAAQLNPRYQFDSFVIGSGNQFAHAAAQAVAERPSKAY-----NPLFVYGGVG 183 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHL+QAI + RQP+ + Y++ E F +++R + +D R +D+LLID Sbjct: 184 MGKTHLMQAIGHQVKLRQPHAAISYVSGEKFTNEMINSVRYDKMTGFRDKFRTVDVLLID 243 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL GK Q EF H N+L +S KQ+V A+DRPP EL + R+RSR + G+ V + Sbjct: 244 DIQFLAGKERTQEEFFHTFNALHESMKQIVIASDRPPKELADFEDRLRSRFEWGLVVDIQ 303 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 D E + +IL+ + E + + +V + +A V T+ REL+GA +L+ S Sbjct: 304 PPDLETKVAILQK-----KAELEQTVLPMDVALFIAGNVRTNVRELEGALVRLIAWCSLH 358 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T A + L ++T +K+ IE IQR VA+++ + +L R +V PRQ+ Sbjct: 359 GVEITLPTAQQCLKQFIDTQ-VRKITIEAIQRAVAENFGMRVAELKQKNNSRQIVVPRQI 417 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYL+K MT S PEIGR+FG + HTTV+H++ K+++ D L + V L + Sbjct: 418 AMYLAKQMTEASLPEIGRQFGGKHHTTVMHSIAKIDEQRRNDKDLNRTVNKLMETL 473 >gi|163751709|ref|ZP_02158928.1| chromosomal replication initiation protein [Shewanella benthica KT99] gi|161328448|gb|EDP99604.1| chromosomal replication initiation protein [Shewanella benthica KT99] Length = 396 Score = 435 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 138/403 (34%), Positives = 221/403 (54%), Gaps = 13/403 (3%) Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 + +I + A V+ T + + + + + I S ++ Sbjct: 4 DAPTLRFDIGSKPAAPRPVQATPAMAPPRVQMNTRPARTAFNVNMPEPAIMTNHRSNINP 63 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 + F F+EG SN++ AAQ +AE Y NPLF++ GLGKTHLL A+ NA Sbjct: 64 AYQFDNFVEGKSNQLGKAAAQQVAENPGGAY-----NPLFLYGGTGLGKTHLLHAVGNAI 118 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 IK PN +VVY+ +E F+ A+++N K R++D L IDD+QF K Q E Sbjct: 119 IKNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALFIDDIQFFANKDRSQEE 178 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+LL+ QV+ +D+ P E++ ++ R++SR G++V + + E R +IL Sbjct: 179 FFHTFNALLEGNHQVILTSDKYPKEIDGVEDRLKSRFGWGLTVAIEPPELETRVAIL--- 235 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLS 398 + + + +N+ +EV +A+ + ++ REL+GA N+++ +F +T + E L Sbjct: 236 --MRKALESGVNLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALR 293 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ K + I++IQ+ VA++Y I D+LS RR R+V RPRQVAM LSK +T +S P Sbjct: 294 DLLALQ-EKLVTIDNIQKTVAEYYKIKMADMLSKRRSRSVARPRQVAMALSKELTNQSLP 352 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 EIG FG RDHTTVLHA R++ ++ E + +K++ L R +S Sbjct: 353 EIGDAFGGRDHTTVLHACRRIAQLREENHDIKEDYANLIRTLS 395 >gi|262371173|ref|ZP_06064494.1| chromosomal replication initiator protein dnaA [Acinetobacter johnsonii SH046] gi|262313903|gb|EEY94949.1| chromosomal replication initiator protein dnaA [Acinetobacter johnsonii SH046] Length = 459 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 153/470 (32%), Positives = 253/470 (53%), Gaps = 19/470 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T +RL+ ++ +V+ W + L + + L P + +I+ +LE IT L Sbjct: 2 LWTDCLTRLRQELSGNVFTMWIRPLVAEELND-TLRLYAPNPYWTRYIQEHHLELITILV 60 Query: 98 QE-EHSRIQGVEILVRS---VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ R++ VEILV S L + E+ A++ + + +P K G S Sbjct: 61 EQLSEGRVRKVEILVDSRPGAILSASEQPATTTAALESAPAPVVRPKKEKEEGNSKNS-- 118 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ F FS F+EG SN++A + + + NPLF++ GLGKTHL+ Sbjct: 119 RKRQLNPLFSFSLFVEGRSNQMAAETCRKVLTQLG----ASQHNPLFLYGPTGLGKTHLM 174 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QA+ NA ++ +PN RV+Y+TAE F+ F S+++ K + R++DLLL+DD+ L G Sbjct: 175 QAVGNALLQAKPNARVMYMTAESFVQDFVSSLQQGKVEEFKKNCRSLDLLLVDDIHLLAG 234 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K EF + N+LLD +KQ++ +DR P EL LDPR+ SR G+SV + D E R Sbjct: 235 KEASLVEFFYTFNALLDESKQIILTSDRYPKELTELDPRLVSRFSWGLSVGVEPPDIETR 294 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 IL + + E + + + +A+ V + REL+GA N++V F + + Sbjct: 295 IEIL-----LKKAESNDVELPRNCALFIAQQVVANVRELEGALNKVVAISRFKGTAIDLD 349 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E L ++ + + E+IQR+V++++ I +L+ +R R RPRQ+AM L++ Sbjct: 350 VVRESLKDVLAIR-ARTISTENIQRVVSEYFRIPLKELVGPKRTRIYARPRQLAMGLARE 408 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T SFPEIG FG RDH+TV+HA KV + + D ++ + L+RL+ Sbjct: 409 LTGDSFPEIGMAFGGRDHSTVMHACEKVLSLRDEDPIFNEDYKNLQRLLQ 458 >gi|239624133|ref|ZP_04667164.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520519|gb|EEQ60385.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 456 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 254/470 (54%), Gaps = 31/470 (6%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + LK + + Y++W + LK +S N V + VP ++ +Y + Sbjct: 9 WEQILLTLKEEHEISNISYSTWLEPLKPYSFKDNTVIIIVPEQTFLQYVNKKYGFLLKVT 68 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + V+ V+ + E + I+ ++ +S + Sbjct: 69 ISEFLEKECEVDFKVKEQIIEKEEPSGPQLIQKNTVTISPDVIQS--------------A 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+S++ F TF+ GS+N +A AA ++AE Y NPLFI+ VGLGKTHL+ AI Sbjct: 115 NLNSKYTFDTFVVGSNNNLAHAAALAVAESPGEIY-----NPLFIYGGVGLGKTHLMHAI 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQG 273 A+ +K P+ +++Y+T+E F AIR+ ++ RN D+LLIDD+QF+ G Sbjct: 170 AHFILKNNPSSKILYVTSETFTNELIDAIRNKNNITTTEFREKYRNNDVLLIDDIQFIIG 229 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L +S KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R Sbjct: 230 KESTQEEFFHTFNTLYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETR 289 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+ ++E NI+ EV+ ++A + ++ REL+GA ++V +T E Sbjct: 290 MAILRK-----KEEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLNKCDITLE 344 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+E L +++ +++ + I ++V+ HY ++ D+ S +R + +V PRQ+ MYL + Sbjct: 345 LAEEALKDIISPNAQREVTPDLIIQIVSDHYGLTPLDISSQKRNKEIVYPRQIVMYLCRN 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT IGR G RDHTT++H K+ ++ D TLK +E+LK+ I+ Sbjct: 405 MTDTPLQTIGRYLGGRDHTTIIHGSEKIAGDIKKDDTLKNTIEILKKKIN 454 >gi|260221776|emb|CBA30678.1| Chromosomal replication initiator protein dnaA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 486 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 138/469 (29%), Positives = 241/469 (51%), Gaps = 21/469 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 +S++ +L ++ + +W + L + + + V F W++ +Y + I Sbjct: 35 QSLWQSCVDQLAQELPEQQFNTWIKPLTALVHEDMSKITVFVANRFKLDWVRAQYSQRIA 94 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + ++ + + VE+++ P A + + + + + G + Sbjct: 95 GMLEKLYGQAVSVELVITPREAPVRPAMAPRAAEVPAAIEEVEVGEDRVAGGPK------ 148 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+S F + +EG++NR+A AA +A + H Y NPLFI+ VGLGKTHL+ Sbjct: 149 -SRLNSMLTFESLVEGTANRMARAAAMHVATMPGHLY-----NPLFIYGGVGLGKTHLMH 202 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ N + +P +V+Y+ AE F+ A + K+ ++DLLLIDD+QF K Sbjct: 203 AVGNRLLVDKPGSKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFANK 262 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +LL +V +D P L + R+ SR G++V + + EMR Sbjct: 263 DRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLADIHERLVSRFDSGLTVAIEPPELEMRV 322 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL I++ + EEV VA+ V ++ REL+GA +++ F ++ ++ Sbjct: 323 AIL-----INKAHAEGSEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEISIQL 377 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K + Sbjct: 378 AREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKEL 436 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 437 TQKSLPEIGELFGGRDHTTVLHAVRKIGGERQQLTELNQQLHVLEQTLK 485 >gi|262200047|ref|YP_003271255.1| chromosomal replication initiator protein DnaA [Gordonia bronchialis DSM 43247] gi|262083394|gb|ACY19362.1| chromosomal replication initiator protein DnaA [Gordonia bronchialis DSM 43247] Length = 509 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 138/510 (27%), Positives = 246/510 (48%), Gaps = 58/510 (11%) Query: 37 SIFTIVSSRLKNQ--------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 ++ V + L + + +W ++ ++ L+VPT ++ I+ Sbjct: 10 EVWQQVVAELNDDEAARDHEPLTRQQ-KAWLSLVRPLTLAEGFALLTVPTPLVQEQIERN 68 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTAS----------------SPSITKLS 132 +TI + + V++ VR P+ E A + + + Sbjct: 69 LRDTIRSALSKHLGQP--VDLGVRIATPPAEEPVAEPIPAVLPADDGLSAALTTGVPTPA 126 Query: 133 PINTNISKSPIILGKQTISPVFG------------------SPLDSRFVFSTFIEGSSNR 174 P P+ + P G + L+ ++ F TF+ G+SNR Sbjct: 127 PGAPFRGPGPVDPASERPRPDTGDWTAYFAERPTTAPAVPSANLNPKYTFDTFVIGASNR 186 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A +A +++E + Y NPLFI GLGKTHLL A + + + P +RV Y++ Sbjct: 187 FAHASAVAVSEAPARAY-----NPLFIWGESGLGKTHLLHAAGHYAQRLFPGMRVKYVST 241 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQ 293 E F F +++RD+ + K R++D+LL+DD+QFL GK IQ EF H N+L +++KQ Sbjct: 242 EEFTNDFINSLRDDRRVAFKRRYRDVDVLLVDDIQFLMGKEGIQEEFFHTFNTLHNASKQ 301 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V ++DRPP +L +L+ R+R+R + G+ + D E R +IL+ + + + + Sbjct: 302 IVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPDLETRIAILRK-----KAQMDNIAVP 356 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIE 412 ++VL +A + + REL+GA ++ S L +AD +L L+ T ++ Sbjct: 357 DDVLELIASKIERNIRELEGALIRVTAFASLNNAELDKSLADVVLQALLPNSGTLEISAA 416 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I + A++++IS +L + R++ + RQ++MYL + +T S P+IG F DRDHTTV Sbjct: 417 SILAITAEYFDISVEELRGPGKTRSIAQARQISMYLCRELTDLSLPKIGETF-DRDHTTV 475 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLISE 502 ++A RK+ K + + V+ L I + Sbjct: 476 MYAERKIRKEMAERRKVYDHVQELTARIKQ 505 >gi|291285948|ref|YP_003502764.1| chromosomal replication initiator protein DnaA [Denitrovibrio acetiphilus DSM 12809] gi|290883108|gb|ADD66808.1| chromosomal replication initiator protein DnaA [Denitrovibrio acetiphilus DSM 12809] Length = 446 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 134/471 (28%), Positives = 237/471 (50%), Gaps = 32/471 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ SI+ V L++++ +W + L + +++ LS P F K W +++L+ Sbjct: 1 MDESSIWEEVLKNLQSELDESEIKTWLEPLTIAELRGDMITLSAPNKFYKKWTDDKFLKH 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I K+F V ++V V P ++ AS P+ G Sbjct: 61 IKKVFNNTLGIDADVTVVVGGVKKPHTQEAASVPA------------------GAPVYVH 102 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 GS L+ + F+ F+ G SN + +A ++++E ++ NPLFI+ GLGKTHL Sbjct: 103 KNGSGLNRDYTFANFVAGGSNEFSFSACEAVSEG-----QFMQYNPLFIYGGSGLGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ N +++ P ++V+Y+T+E F +++R + R ID+LL DD+QFL Sbjct: 158 MHAVGNRILEKFPKMKVLYITSETFTNDMINSLRTRKMEEFQARYRTIDVLLFDDVQFLS 217 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK EF + N+L D+ KQ++ +D+ P+E+ ++ R++SR G+ + E Sbjct: 218 GKQRSTEEFFNTFNALYDNQKQIIITSDKTPAEIPDMEDRLKSRFAWGLIADIQPPSTEE 277 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVART-VTTSGRELDGAFNQLVFRHSF-APILT 389 + +IL + + E L + EV + +A +T + REL GA +L SF LT Sbjct: 278 KTAIL-----MKRAEFMGLKLPGEVALFIAENMITENVRELMGALVRLSAFASFHKRGLT 332 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A + L + + K + +DI V K++N+ DL S +R +++ PRQ+AMY+ Sbjct: 333 IDLAKDALDKFI-VKKDKMVSSDDIVNAVCKYFNVKMADLRSKKRTKSISFPRQIAMYML 391 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + S E+G FG RDH+TVLHAV + E ++ + L++ + Sbjct: 392 REKLNLSLQEVGSIFGGRDHSTVLHAVNSIAGKHEESKEIQLIISTLEKDL 442 >gi|319785621|ref|YP_004145096.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas suwonensis 11-1] gi|317464133|gb|ADV25865.1| chromosomal replication initiator protein DnaA [Pseudoxanthomonas suwonensis 11-1] Length = 445 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 157/468 (33%), Positives = 244/468 (52%), Gaps = 26/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + RL+ + + +W + L+ V L P F+ ++ RYL I +L Sbjct: 2 DAWPRCLERLEAEFPAEDVHTWLKPLQAEERPDG-VVLYAPNAFIVEQVRERYLARIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 Q V++ + S + E +++P++ +S P F Sbjct: 61 AQHFAGH-LNVQLEIGSR-PKAPEPVSAAPAVHAGGTATRPVSSEP-----------FNG 107 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LD +VF F+EG SN++ AA A+ NPL ++ GLGKTHL+ A Sbjct: 108 NLDPHYVFDNFVEGRSNQLGRAAAWQAAQKPG----DRAHNPLLLYGGTGLGKTHLMFAA 163 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 N + P RV+YL +E F F A+++ A K + ID LLIDD+QF GK Sbjct: 164 GNEMRRLNPGARVLYLRSEQFYSAFFRALQEKTADQFKRQFQQIDALLIDDIQFFAGKDR 223 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H NSL DS +Q++ DR P E++ L+PR++SRL G+SV + D+E R +I Sbjct: 224 TQEEFFHTFNSLFDSRQQIIMTCDRYPREVDGLEPRLKSRLAWGLSVAIDPPDFETRAAI 283 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + + +EV +A+ + ++ R+L+GA N L R +F ++ E A Sbjct: 284 V-----LAKARERGTVVPDEVAFLLAKKMRSNVRDLEGALNTLAARANFTGRAISVEFAQ 338 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 339 ETLRDLLRAQQ-QAIGIPNIQKTVADYYGLQVKDLLSKRRTRSLARPRQVAMALTKELTE 397 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++ETD L+++ + L R +SE Sbjct: 398 HSLPEIGDAFAGRDHTTVLHACRQIRTLMETDGKLREDWDKLIRKLSE 445 >gi|312897428|ref|ZP_07756852.1| replication initiator protein DnaA [Megasphaera micronuciformis F0359] gi|310621489|gb|EFQ05025.1| replication initiator protein DnaA [Megasphaera micronuciformis F0359] Length = 513 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 159/514 (30%), Positives = 259/514 (50%), Gaps = 50/514 (9%) Query: 27 DKRCLE-VNCESIFTIVSSRLKNQVGPDVYASWFQ-RLKFHSVLHNIVHLSVPTNFLKAW 84 ++ +E ++ ++ + +LK + P +Y +W + L +S+ +N L TNF+ ++ Sbjct: 5 ERSLMETIDITELWIRMLEKLKQSLPPQIYNTWIETSLIPYSLENNTFTLDTTTNFICSY 64 Query: 85 IKNRYLETITKLFQEEHSRIQGVEIL----------------------VRSVALPSVEKT 122 I +Y + + V ++ + + + ++E Sbjct: 65 ITKKYTHLLETTASSVADQEIKVRLIHSAGDLSDMGQSNTQKKEESQDIYANNVYTIESL 124 Query: 123 ASSPSITKLSPINTNIS-------------KSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 + + + P + P K I S L+ + F TF+ Sbjct: 125 KTHETTESVPPHTEQVQTGSEPTYTPDIKQSGPFSDEKDDILQTGASTLNDAYTFDTFVV 184 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G+SNR+A AA SIAE Y+ P FI+ GLGKTHL+ AI + +K P+LR+ Sbjct: 185 GNSNRLAHAAAMSIAESPMTKYS-----PFFIYGDSGLGKTHLMHAIGHYILKHYPHLRL 239 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLL 288 +T+E F +I+D + + RNID+LL+DD+QFL+ K Q EF H N L Sbjct: 240 RCITSEDFANELIQSIQDKNPESFRQRYRNIDVLLVDDIQFLESKEHTQEEFFHTFNKLY 299 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 KQ+V +DRPP ++ L+ R+RSR QGG V + D E R +IL+NR I Sbjct: 300 KDHKQMVFTSDRPPQNIKKLEDRLRSRFQGGTVVNIDPPDLETRTAILRNRAKIE----- 354 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 L I++E + ++A V+ + REL+GAF + + S +T E+ L LV T + K Sbjct: 355 HLPIDKEAIDYIASNVSENIRELEGAFIRAQMQASVENSPITLEVTQRALQELVKTKQEK 414 Query: 408 K-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + I++I + V +Y I DL+S +++ + PRQ+AMYL + +T ++P IG F D Sbjct: 415 KYITIDEITKHVCSYYKIKYEDLMSKTKLKKIAFPRQIAMYLCRELTEHTYPHIGVAFND 474 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RDHTTV++AV K+ K ++ D +L+K VE +K I Sbjct: 475 RDHTTVIYAVNKISKEIKKDESLRKAVEQIKNSI 508 >gi|117927212|ref|YP_871763.1| chromosomal replication initiator protein DnaA [Acidothermus cellulolyticus 11B] gi|117647675|gb|ABK51777.1| chromosomal replication initiator protein DnaA [Acidothermus cellulolyticus 11B] Length = 480 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 246/474 (51%), Gaps = 21/474 (4%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ RL+ Q + P Y +W ++ +++ + L+ P +F K ++ R + Sbjct: 14 LWSRTVDRLQRQGDLSPQ-YQAWISLIQPLALVEDTAVLAAPHSFAKEVLETRLRPALLA 72 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS---- 151 E R + + V + A + E ++S + + + G+ +I Sbjct: 73 ALAAEAGRELRIAVSVETPADVAAETASTSTATEADDVDEMDEAAHEPASGRSSIDLASQ 132 Query: 152 --PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L+ ++ F TF+ G+SNR A AA + AE + Y NPLFI+ GLGK Sbjct: 133 RRAHEAARLNPKYTFETFVIGASNRFAHAAAFAAAESPAKAY-----NPLFIYGDSGLGK 187 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + ++ N+RV Y+++E F F ++IRD A + R++D+LL+DD+Q Sbjct: 188 THLLHAIGHYALSLFGNIRVRYVSSEEFTNDFINSIRDGKAEGFRRRYRDVDVLLVDDIQ 247 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL+ K Q EF H N+L ++ KQ+V ++DR P +L +L+ R+R+R + G+ + + Sbjct: 248 FLENKEQTQEEFFHTFNTLHNANKQIVISSDRAPKQLVTLEDRLRNRFEWGLITDVQPPE 307 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + L+I EVL ++A ++++ REL+GA ++ + Sbjct: 308 LETRIAILRK-----KAAQEGLDIPNEVLEYIASKISSNIRELEGALIRISAFANLNRQR 362 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ +T ++ I ++ +S DL + R R +V RQVAMY Sbjct: 363 VDLALAEVVLKDLIPDSQTPEITAALIMAETGAYFGVSIEDLCGSSRSRVLVTARQVAMY 422 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + +T S P+IG+ FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 423 LCRELTDLSLPKIGQHFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 476 >gi|317499294|ref|ZP_07957567.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 5_1_63FAA] gi|291558404|emb|CBL37204.1| chromosomal replication initiator protein DnaA [butyrate-producing bacterium SSC/2] gi|316893463|gb|EFV15672.1| chromosomal replication initiator protein DnaA [Lachnospiraceae bacterium 5_1_63FAA] Length = 447 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 138/478 (28%), Positives = 244/478 (51%), Gaps = 43/478 (8%) Query: 30 CLEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK- 86 ++ E I+ V +L+ + V +W + L V N + LS+ + + I+ Sbjct: 3 SMKNEIEKIWDDVLVKLEQEHDVSSAAINAWIKPLHIKDVQSNKIILSLDAKYDERGIQF 62 Query: 87 ---NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 Y I+ + + +E + E A++P Sbjct: 63 IKKKMYDFYISLAISDLTGKKYDIEFELEKEGEKPQETPAAAPEHD-------------- 108 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + L+ R+ F TF+ G +NR+A A+ ++AE + Y NPLF++ Sbjct: 109 -----------NNNLNPRYTFDTFVIGDNNRMAHAASIAVAEAPAEAY-----NPLFLYG 152 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 GLGKTHL+ +IA+ I+ +L V+Y+T+E F ++I+ L+ RNID+L Sbjct: 153 GAGLGKTHLMHSIAHYIIEHNSSLNVLYVTSEDFTNEVINSIQHKKQEELRSKYRNIDVL 212 Query: 264 LIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+QF+ GK Q EF H N+L +S KQ++ ++D+PP EL+ L+ R+RSR G+ V Sbjct: 213 LVDDIQFVIGKESTQQEFFHTFNALYNSKKQIILSSDKPPKELDVLEERLRSRFSWGLPV 272 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + +YE + +IL+ + E + I++E+ ++A + ++ R+L+GA N++ Sbjct: 273 DIQPPNYETKVAILRK-----RAELDNIYIDDEIFDYIATHIKSNIRDLEGALNKIKVYS 327 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + E++ L L++ + + E I + VA+H+NI +D++S +R + P Sbjct: 328 KLNKKPIDLELSKIALQDLIDNKTKQAITPELIMQTVAEHFNIQTSDIISKKRSHDIAYP 387 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RQ+ MYL K MT +S +IG G RDH+TV+H + K+EK L+ D L K ++++ + Sbjct: 388 RQICMYLCKKMTDQSLVKIGEIIGKRDHSTVIHGIEKIEKDLDKDPELSKVIDVITKK 445 >gi|87123971|ref|ZP_01079821.1| chromosomal replication initiator protein DnaA [Synechococcus sp. RS9917] gi|86168540|gb|EAQ69797.1| chromosomal replication initiator protein DnaA [Synechococcus sp. RS9917] Length = 466 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 245/473 (51%), Gaps = 16/473 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++ V L++ + + +W + + + + L P +F W++ Y+ Sbjct: 1 MVLTGSELWNKVQHALQSSLSKPTFETWIRPARCSAFADGELTLQAPNSFASNWLRKNYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI ++ + H V +L R A + A S + N + + Sbjct: 61 ATIAEVASDLHGAPVTVTVLAREEAAADPPQAAQSQAAGVAPAATANPTTTTTAAASGAA 120 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGKT Sbjct: 121 PRRL-PGLNMRYVFNRFVVGPNSRMAHAAALAVAESPGR-----EFNPLFICGGVGLGKT 174 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P+ RV Y++ E F AIR + +D R DL+L+DD+QF Sbjct: 175 HLMQAIGHYRLEIDPDARVSYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLILVDDIQF 234 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D Sbjct: 235 IEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPDL 294 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E ++ + +++ +++ T++ REL+GA + V FA I Sbjct: 295 ETRMAILQK-----KAEQERVTLPRDLIQYISGRFTSNIRELEGALTRAVA---FASITG 346 Query: 390 AEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++ +G+ ++ + + V++ +++S +D+LS+ R R V + RQV M+L Sbjct: 347 LPMTVESVAPMLDPSGQGVEVTPQQVIEKVSEVFDVSADDMLSSSRRRAVSQARQVGMFL 406 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV++A+ +VEK L +D L +V+ ++ ++ Sbjct: 407 MRQGTGLSLPRIGETFGGKDHTTVMYAIEQVEKKLASDPQLASQVQRVRYMLQ 459 >gi|254490242|ref|ZP_05103432.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxidans DMS010] gi|224464589|gb|EEF80848.1| chromosomal replication initiator protein DnaA [Methylophaga thiooxydans DMS010] Length = 418 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 148/434 (34%), Positives = 241/434 (55%), Gaps = 23/434 (5%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQE-EHSRIQGVEILVRSVAL---PSVEKTASSPSIT 129 L P ++KAW++ + I L I V I V + A+ PS +T ++ T Sbjct: 1 LLAPNPYVKAWVQEQLESQINTLIAALSQGSIDKVAIEVGTKAMGNMPSRRQTDATEPET 60 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 +N+ S++ P G+P++ F F +++EG SN++A A+ +AE Sbjct: 61 TTPLVNSKPSET-------KAEPAIGNPMNPLFTFDSYVEGKSNQIARAASLHVAEAPG- 112 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 T NPLF++ GLGKTHL+ A+ N + P RV+YL++E F+ +A+R+N Sbjct: 113 ---TSGYNPLFLYGGTGLGKTHLMLAVGNKIKQDNPKARVIYLSSERFVQDMITALRNNA 169 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 K R+ D LLIDD+QF K Q EF + NSLL+ +Q++ DR P E+E+L Sbjct: 170 IDQFKSHYRSADALLIDDIQFFAKKERSQEEFFYTFNSLLEGQRQIILTCDRFPKEVENL 229 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 D R++SRL G++V + + E R +IL I + + + + E+V +A+ + ++ Sbjct: 230 DERLQSRLGWGLTVAIEPPELETRVAIL-----IKKAQQNLITLPEDVAFFIAKRIKSNV 284 Query: 369 RELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 R+L+GA +++ F L+ ++A E L L+ K + +E IQ+ V +++ + + Sbjct: 285 RDLEGALQRVLAFSRFTNQPLSIDMAQEALKDLLAL-HQKLVTLESIQKTVGEYFKVRVS 343 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DLL+ +R R++ RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RKV ++ E+D Sbjct: 344 DLLAKKRTRSIARPRQIAMALAKELTSHSLPEIGDAFGGRDHTTVLHACRKVAELKESDT 403 Query: 488 TLKKEVELLKRLIS 501 + ++ L R +S Sbjct: 404 RVAEDYRNLLRTLS 417 >gi|320095107|ref|ZP_08026816.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 178 str. F0338] gi|319977974|gb|EFW09608.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 178 str. F0338] Length = 483 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 138/471 (29%), Positives = 227/471 (48%), Gaps = 28/471 (5%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 ++GP S + + + + L+VP F K+WI++R +T R + Sbjct: 20 KELGPAA-TSMLRSARPLGDIEGTILLAVPNAFTKSWIEDRASNQLTAALTASLGRTVRI 78 Query: 108 EILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG----SPL 158 I V P E A+SP + +P + + L Sbjct: 79 AITVDPSISAVTEEPKPEPPAASPLAPAAPASSPLARPAPAPQTGPALVSSAQNGGLTHL 138 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + ++ F TF+ G SNR A AA +++E NPLFI+ GLGKTHLL AI + Sbjct: 139 NPKYTFETFVIGPSNRFAHAAALAVSETPG-----TSFNPLFIYGDSGLGKTHLLHAIGH 193 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQG 273 ++ P+L+V Y+ +E F F +AIR N N R +D+LLIDD+QF+ Sbjct: 194 YALSLLPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGD 253 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K F H N+L ++ KQ+V +D PP++L + R+RSR G+ V + D E R Sbjct: 254 KEQTVEGFFHTFNALYENNKQIVLTSDVPPAQLNGFEDRMRSRFASGLLVDVQPPDLETR 313 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+ + L + +VL ++A ++++ REL+GA +++ + + + Sbjct: 314 IAILQK-----KATTDSLEVTPDVLEYIASRISSNIRELEGALLRVIAFANLSKERIDLP 368 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ LL V+ ++ + I A ++ I+ + S+ R TVV RQ+AMYL + Sbjct: 369 LAEMLLKDFVSDPTDNEVTVPLIMGQCAHYFGITIEQMSSSDRSHTVVEARQIAMYLCRE 428 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG+ FG RDHTTV+HA +K+ +++ V L I + Sbjct: 429 LTDLSLPKIGQAFG-RDHTTVMHANKKITALMKEKRETFNHVSELTNRIKQ 478 >gi|160941462|ref|ZP_02088797.1| hypothetical protein CLOBOL_06353 [Clostridium bolteae ATCC BAA-613] gi|158435608|gb|EDP13375.1| hypothetical protein CLOBOL_06353 [Clostridium bolteae ATCC BAA-613] Length = 456 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 144/470 (30%), Positives = 251/470 (53%), Gaps = 31/470 (6%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + LK + + Y++W + LK HS N V + VP ++ +Y + Sbjct: 9 WDKILLTLKEEHEISNISYSTWLEPLKPHSFKDNTVTIIVPEQTFLQYVNKKYGFLLKVT 68 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E + V+ V+ + + E A + ++ ++ +S + Sbjct: 69 ISEFLEKECEVDFKVKEQIVEAEEPAAPQLIKNNKASVSPDVIQS--------------A 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ ++ F TF+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ AI Sbjct: 115 NLNPKYTFDTFVVGGNNNLAHAAALAVAESPGEIY-----NPLFIYGGVGLGKTHLMHAI 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQG 273 A+ +K +++Y+T+E F AIR+ ++ RN D+LLIDD+QF+ G Sbjct: 170 AHFILKNNAKSKILYVTSETFTNELIDAIRNKNNITTTEFREKYRNNDVLLIDDIQFIIG 229 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L +S KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE R Sbjct: 230 KESTQEEFFHTFNTLYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYETR 289 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+ ++E NI+ EV+ ++A + ++ REL+GA ++V +T E Sbjct: 290 MAILRK-----KEEMEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLNKCDITLE 344 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+E L +++ +++ + I ++V+ H+ ++ D+ S +R + +V PRQ+ MYL + Sbjct: 345 LAEEALKDIISPNAQREVTPDLIIQVVSDHFGLTPLDISSQKRNKEIVYPRQIVMYLCRD 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT IGR G RDHTT++H K+ + D TL+ +E+LK+ I+ Sbjct: 405 MTATPLQTIGRYLGGRDHTTIIHGAEKITGDMAKDDTLRNTIEILKKKIN 454 >gi|239993750|ref|ZP_04714274.1| Chromosomal replication initiator protein dnaA [Alteromonas macleodii ATCC 27126] Length = 551 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 127/369 (34%), Positives = 210/369 (56%), Gaps = 13/369 (3%) Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 S +P + + S ++ + F F+EG SN++A AA +A Y Sbjct: 193 QAPRSSTPPKVIPIPEAMKHKSNINPTYQFDNFVEGKSNQLARAAATQVANNPGGSY--- 249 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLFI+ GLGKTHLL A+ N + + ++VY+ +E F+ A+++N + K Sbjct: 250 --NPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMVKALQNNAIEDFK 307 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E++ ++ R++ Sbjct: 308 RFYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLK 367 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G+++ + + E R +IL + + + ++++ EV +A+ + ++ REL+G Sbjct: 368 SRFGWGLTIAIEPPELETRVAIL-----MRKAAENRIHLPNEVAFFIAKRLRSNVRELEG 422 Query: 374 AFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A N+++ +F +T + E L L+ K + +++IQ+ VA +Y I D+LS Sbjct: 423 ALNRVIANANFTGRPITIDFVREALRDLLALQ-EKLVTVDNIQKTVADYYKIKVADILSK 481 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR R+V RPRQVAM L+K +T S PE+G FG RDHTTVLHA RK+E++ E +K++ Sbjct: 482 RRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIKED 541 Query: 493 VELLKRLIS 501 + L R +S Sbjct: 542 YKNLIRTLS 550 >gi|118474040|ref|YP_891139.1| chromosomal replication initiation protein [Mycobacterium smegmatis str. MC2 155] gi|152013510|sp|A0R7K1|DNAA_MYCS2 RecName: Full=Chromosomal replication initiator protein DnaA gi|152013511|sp|P0C557|DNAA_MYCSM RecName: Full=Chromosomal replication initiator protein DnaA gi|1321893|emb|CAA63248.1| dnaA [Mycobacterium smegmatis] gi|118175327|gb|ABK76223.1| chromosomal replication initiator protein DnaA [Mycobacterium smegmatis str. MC2 155] Length = 504 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 145/506 (28%), Positives = 246/506 (48%), Gaps = 56/506 (11%) Query: 37 SIFTIVSSRLKNQVG-------------PDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +++ V + L V P +W + +K + LSVPT F++ Sbjct: 11 AVWNSVVAELNGDVNGDRQGDPSLPVLTPQQ-RAWLKLVKPLVIAEGFALLSVPTPFVQN 69 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 I+ E I + + VE+ VR +A P+ E +P SP ++ P Sbjct: 70 EIERHLREPIVTALSRKLGQ--RVELGVR-IATPTDEPE-DAPDSFADSPAPASVPAGPA 125 Query: 144 -------------------------ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALT 178 + L+ R+ F TF+ G+SNR A Sbjct: 126 DADEIDDDRDARVNAQESWPKYFSRPEPDTSSDDSNAVNLNRRYTFDTFVIGASNRFAHA 185 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 A +IAE + Y NPLFI GLGKTHLL A N + + P +RV Y++ E F Sbjct: 186 ATLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFT 240 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 F +++RD+ + K S R+ID+LL+DD+QF++GK IQ EF H N+L +S KQ+V + Sbjct: 241 NDFINSLRDDRKASFKRSYRDIDILLVDDIQFIEGKEGIQEEFFHTFNTLHNSNKQIVIS 300 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L++ ++VL Sbjct: 301 SDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMDRLDVPDDVL 355 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A ++ + REL+GA ++ S + +A+ +L L+ T ++ I Sbjct: 356 ELIASSIERNIRELEGALIRVTAFASLNKTRIDRSLAEVVLRDLIADATTMQISTAAIMA 415 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 + A+++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A Sbjct: 416 VTAEYFETTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAE 474 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 +K+ + + V+ L I + Sbjct: 475 KKIRGEMAERREVFDHVKELTTRIRQ 500 >gi|167766864|ref|ZP_02438917.1| hypothetical protein CLOSS21_01381 [Clostridium sp. SS2/1] gi|167711412|gb|EDS21991.1| hypothetical protein CLOSS21_01381 [Clostridium sp. SS2/1] Length = 444 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 138/477 (28%), Positives = 244/477 (51%), Gaps = 43/477 (9%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK-- 86 ++ E I+ V +L+ + V +W + L V N + LS+ + + I+ Sbjct: 1 MKNEIEKIWDDVLVKLEQEHDVSSAAINAWIKPLHIKDVQSNKIILSLDAKYDERGIQFI 60 Query: 87 --NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 Y I+ + + +E + E A++P Sbjct: 61 KKKMYDFYISLAISDLTGKKYDIEFELEKEGEKPQETPAAAPEHD--------------- 105 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + L+ R+ F TF+ G +NR+A A+ ++AE + Y NPLF++ Sbjct: 106 ----------NNNLNPRYTFDTFVIGDNNRMAHAASIAVAEAPAEAY-----NPLFLYGG 150 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHL+ +IA+ I+ +L V+Y+T+E F ++I+ L+ RNID+LL Sbjct: 151 AGLGKTHLMHSIAHYIIEHNSSLNVLYVTSEDFTNEVINSIQHKKQEELRSKYRNIDVLL 210 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ GK Q EF H N+L +S KQ++ ++D+PP EL+ L+ R+RSR G+ V Sbjct: 211 VDDIQFVIGKESTQQEFFHTFNALYNSKKQIILSSDKPPKELDVLEERLRSRFSWGLPVD 270 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + +YE + +IL+ + E + I++E+ ++A + ++ R+L+GA N++ Sbjct: 271 IQPPNYETKVAILRK-----RAELDNIYIDDEIFDYIATHIKSNIRDLEGALNKIKVYSK 325 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + E++ L L++ + + E I + VA+H+NI +D++S +R + PR Sbjct: 326 LNKKPIDLELSKIALQDLIDNKTKQAITPELIMQTVAEHFNIQTSDIISKKRSHDIAYPR 385 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 Q+ MYL K MT +S +IG G RDH+TV+H + K+EK L+ D L K ++++ + Sbjct: 386 QICMYLCKKMTDQSLVKIGEIIGKRDHSTVIHGIEKIEKDLDKDPELSKVIDVITKK 442 >gi|150006675|ref|YP_001301418.1| chromosomal replication initiation protein [Parabacteroides distasonis ATCC 8503] gi|262384875|ref|ZP_06078007.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_33B] gi|298377645|ref|ZP_06987596.1| ATPase [Bacteroides sp. 3_1_19] gi|301308943|ref|ZP_07214888.1| ATPase involved in DNA replication initiation [Bacteroides sp. 20_3] gi|149935099|gb|ABR41796.1| chromosomal replication initiator protein DnaA [Parabacteroides distasonis ATCC 8503] gi|262293591|gb|EEY81527.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_33B] gi|298265348|gb|EFI07010.1| ATPase [Bacteroides sp. 3_1_19] gi|300832969|gb|EFK63594.1| ATPase involved in DNA replication initiation [Bacteroides sp. 20_3] Length = 465 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 239/475 (50%), Gaps = 15/475 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + ++++ + +K+ V + +WF + S + VP+ F +++ +Y+ Sbjct: 1 MQTDYQTLWNKCLAVIKDIVPKAAFDTWFVPIVPLSYEDKKFTIQVPSQFFYEYLEEKYV 60 Query: 91 ETITKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + + I I+V +V+ A + S + +K+P Sbjct: 61 NVLKVTLYRVIGQGTILNYRIMVDKTTGGTVDYPAENASTAVKKVTPKDANKAPNPF-MT 119 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T L+ ++ F + EG+SN++ TA +++A+ NPLFI G+G Sbjct: 120 TAPQDLDPQLNPKYNFDNYFEGTSNKLVRTAGEAVAQNPGK----TTFNPLFIFGPSGVG 175 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL AI + P +V+Y+++ F +F AIR N + + +NID+LL+DD+ Sbjct: 176 KTHLCHAIGTRIRELHPEKKVLYVSSHLFRVQFTDAIRKNTTNDFLNFYQNIDVLLLDDI 235 Query: 269 QFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q L G Q+ F H+ N L KQ++ +D+PP +L+ ++ R+ +RL+ G++ L Sbjct: 236 QELIGMDKTQNTFFHIFNHLHQLGKQLILTSDKPPVDLQGMEERLITRLKWGLTAELSRP 295 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAP 386 D ++R ILKN++ + I +EV +A VT + R+L+G L+ Sbjct: 296 DLDLRKKILKNKIN-----HDGIMIPDEVFNFIANNVTENVRDLEGILVSLMANAVINNR 350 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + + ++S V E K++ ++ IQ +V K++N+ ++ + +N R R +V+ RQ+ M Sbjct: 351 EIDLPLTKRVVSQAVRL-EKKQISVQMIQEIVCKYFNLEQSVIQTNSRKREIVQARQITM 409 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL+K T SF IG+ G +DH TVLHA + ++ +ET + + VE ++ L+ Sbjct: 410 YLAKKYTDSSFSHIGKIVGKKDHATVLHACKTIKDQIETSKSFRSSVEEIEVLLK 464 >gi|326335802|ref|ZP_08201982.1| replication initiation protein DnaA [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692041|gb|EGD34000.1| replication initiation protein DnaA [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 475 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 137/483 (28%), Positives = 244/483 (50%), Gaps = 22/483 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL-HNIVHLSVPTNFLKAWIKNRY 89 + + ++I+ S +K+ V DV+ WF+ ++ + N + + VP+ F W+++ Y Sbjct: 1 MNTDVQNIWKNCLSFIKDNVTSDVFDVWFKPIEPVELTKDNTLVIMVPSMFFMEWLEDHY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + I +E + ++ P+ + A+ + + +++ Sbjct: 61 INLIWSALTKELGTRPKLIYNIKMENNPNKAEQATEQLPSANRKATNMEALGYGQKPQES 120 Query: 150 ISPVF---------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +P S L+ F FIEG SNR+A +A +I + NPLF Sbjct: 121 FNPYIVPGLVEVKVDSQLNPNKNFDNFIEGESNRLARSAGMAITQRPG----GTSFNPLF 176 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I VGLGKTHL AI N ++ P +++Y+ AE F ++A A ++N + + I Sbjct: 177 IFGGVGLGKTHLAHAIGNEIQEKFPKKKILYIEAEDFTKQYAVAAKNNNRTDFIHFYQQI 236 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+L+ID++QF K Q F + N L + KQ++ +D+ P +++ ++ R+ SR + G Sbjct: 237 DVLIIDNVQFFASKQGTQDVFFQIFNHLHQNGKQLILTSDKAPVDIQDVEQRLLSRFKWG 296 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 +S L DY+MR +IL + L E ++EE++ ++A+ V T+ REL+G L+ Sbjct: 297 LSAELQAPDYQMRKNILNSILYRDGVE-----MSEEIVDYIAQNVKTNIRELEGVNTSLM 351 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 F +T ++A + + +V K++ +E IQ +V++++ ++ +L S R R V Sbjct: 352 AEALFNKKEITLDLAKKAVDKIVKN-IKKEITVEYIQEIVSEYFQLTIEELQSKTRKRHV 410 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+ RQ+AM+ +K T S IG+ G RDH TVLHA + V+ + ETD +K + L Sbjct: 411 VQARQLAMFFAKKYTKLSLANIGKYIGKRDHATVLHACKTVDNLNETDKQFRKFLTDLNT 470 Query: 499 LIS 501 IS Sbjct: 471 KIS 473 >gi|254784274|ref|YP_003071702.1| chromosomal replication initiation protein [Teredinibacter turnerae T7901] gi|259645262|sp|C5BKL9|DNAA_TERTT RecName: Full=Chromosomal replication initiator protein DnaA gi|237685666|gb|ACR12930.1| chromosomal replication initiator protein DnaA [Teredinibacter turnerae T7901] Length = 593 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 142/401 (35%), Positives = 228/401 (56%), Gaps = 18/401 (4%) Query: 103 RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRF 162 + + L+ + P +E + S + + + K + G Q L++ F Sbjct: 208 EPRSTDPLLEIESRPIIETVSPRDIQDFGSQLTSRVKKKDVEGGIQ-----HKHNLNTTF 262 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 +F F+ G SN++ L AA +AE Y NPLFI+ VGLGKTHL+ A+ NA ++ Sbjct: 263 IFDNFVVGKSNQLGLAAASQVAENPGGAY-----NPLFIYGGVGLGKTHLMHAVGNALVQ 317 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 R+P RVVYL +E F+ A++ N + K R++D LLIDD+QF GK Q EF Sbjct: 318 RKPGARVVYLHSERFVADMVKALQLNAISDFKRFYRSVDALLIDDIQFFAGKERSQEEFF 377 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+LL+ +Q++ D+ P E+ L+ R++SR G++V + + E R +ILK Sbjct: 378 HTFNALLEGGQQIILTCDKYPKEINGLEERLKSRFGWGLTVAIEPPELETRVAILKR--- 434 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL 400 + E ++ + ++ +A+ + ++ REL+GA +++ F ++ E+ E L L Sbjct: 435 --KAESSRMPLPDDAAFFIAQRIRSNVRELEGALKRVIANAQFTQRSISVELVREALKDL 492 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + + + I++IQR+VA++Y I +DL S RR R+V RPRQVAMYL+K +T S PEI Sbjct: 493 LALQ-DRLVSIDNIQRVVAEYYKIKVSDLHSKRRSRSVARPRQVAMYLAKDLTHHSLPEI 551 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G FG RDHTTVLHA RK+ + E+D ++++V+ L R ++ Sbjct: 552 GDAFGGRDHTTVLHACRKIRDLQESDADIREDVKNLLRTLT 592 Score = 87.8 bits (216), Expect = 4e-15, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 44/113 (38%), Gaps = 3/113 (2%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + S L+N++ + +W + L+ ++ L P F++ W+ ++Y I ++ Sbjct: 6 WEQCVSCLQNELPSQQFNTWIRPLRVEESSTLLLRLIAPNRFVQDWVNDKYRTRIEEIIS 65 Query: 99 EEHSRIQGVEILVRSVAL---PSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + + +EI V A V +P++ P+ + + Sbjct: 66 NSDAGPKSLEIAVAQRARAGFEVVRNAKVAPAVPVPDPLPSTGRDESSFQPPK 118 >gi|116075382|ref|ZP_01472642.1| chromosomal replication initiation protein [Synechococcus sp. RS9916] gi|116067579|gb|EAU73333.1| chromosomal replication initiation protein [Synechococcus sp. RS9916] Length = 469 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 142/474 (29%), Positives = 247/474 (52%), Gaps = 18/474 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ ++ V L+ + + +W + ++ S + L P +F W++ YL T Sbjct: 2 LSGSELWNKVQHALQGSLSKPTFETWLRPVRCSSFSDGELCLQAPNSFASNWLRKHYLST 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI---ILGKQT 149 IT+L + R V + R T + + + + QT Sbjct: 62 ITELATDIIGRPVQVTVEARQEDQEGAASTPVQAAPAPAPVAMASDASASAVAVPSPGQT 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +P L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGK Sbjct: 122 RAPRRLPGLNRRYVFNRFVVGPNSRMAHAAALAVAESPGR-----EFNPLFICGGVGLGK 176 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P+ RV Y++ E F AIR + +D R DL+L+DD+Q Sbjct: 177 THLMQAIGHYRLEIDPDARVSYVSTETFTNDLIVAIRKDGMQAFRDRYRATDLILVDDIQ 236 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D Sbjct: 237 FIEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPD 296 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL+ + E K+++ +++ +++ T++ REL+GA + V FA I Sbjct: 297 LETRMAILQK-----KAEQEKVSLPRDLIQYLSGRFTSNIRELEGALTRAVA---FASIT 348 Query: 389 TAEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E ++ ++ +G+ ++ + + V++ +++S +D+ S+ R RTV + RQV M+ Sbjct: 349 GLPMTVESVAPMLDPSGQGVEVTPQQVIDKVSEVFDVSADDMRSSSRRRTVSQARQVGMF 408 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + T S P IG FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 409 LMRQGTDLSLPRIGETFGGKDHTTVMYAIEQVEKKLSSDPQLASQVQKVKDLLQ 462 >gi|123965864|ref|YP_001010945.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9515] gi|166214691|sp|A2BVM7|DNAA_PROM5 RecName: Full=Chromosomal replication initiator protein DnaA gi|123200230|gb|ABM71838.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9515] Length = 463 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 143/467 (30%), Positives = 246/467 (52%), Gaps = 20/467 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P NF W++ Y ETI K Sbjct: 7 IWAEVQQLLQKNLSKPSFETWIRPAKFNCFENGLLTLITPNNFTSDWLRKNYSETIEKAA 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +E I G + V + +V ++ P I + G T + S Sbjct: 67 EE----ICGHNVKVIFKSENNVNNNSNIPDTVSQQSIKSQTRSISTSQGNNTNNRTKKSH 122 Query: 158 -LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLGKTHL+QAI Sbjct: 123 SLNIRYVFKRFVVGPNSRMAHAAALAVAESPGR-----EFNPLFICGGVGLGKTHLMQAI 177 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + ++ P +V+Y++ E F +IR + K+ R++DLLLIDD+QFL+GK Sbjct: 178 GHYRVEIDPEAKVLYVSTETFSSDLIQSIRKDGMHVFKNKYRSVDLLLIDDIQFLEGKEY 237 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF + N+L ++ KQ+V A+DRPPS++ L R+ SR G+ + D E R +I Sbjct: 238 TQEEFFNTFNALYEAGKQIVIASDRPPSQIPKLQERLISRFSMGLIADIQPPDIETRMAI 297 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ + E ++N+ +++ +A +++ REL+GAF + V FA I + + Sbjct: 298 LQK-----KAEQERMNLPRDLVQFIAGRFSSNIRELEGAFTRAVA---FASITGLPMTVQ 349 Query: 396 LLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++ ++ + + + + V+ ++++ +L+S+ R + V + RQ+ MYL + T Sbjct: 350 SIAPMLDPNSVGVVVTPKQVIKKVSDFFSVTAEELVSSSRRKPVSQARQIGMYLMRQGTN 409 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P+IG FG +DHTTV++A+ +VEK L +D + +V+ +K L+ Sbjct: 410 LSLPKIGDEFGGKDHTTVMYAIEQVEKKLSSDPNVASQVQKIKDLLQ 456 >gi|302341687|ref|YP_003806216.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] gi|301638300|gb|ADK83622.1| chromosomal replication initiator protein DnaA [Desulfarculus baarsii DSM 2075] Length = 457 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 133/467 (28%), Positives = 240/467 (51%), Gaps = 28/467 (5%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V ++ QV + +W L + + +S P F WIK+ YL + ++ Sbjct: 10 LWEQVRQTMRGQVDHREFETWLAPL-AMRLEADWAVISAPNRFFVDWIKDHYLSQLEQVI 68 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + +R + + +P+ P+ + + ++ + Sbjct: 69 SQCAARPLRLRFETGNGPVPASR------------PVEAQPALAQPAPAAPALTSLAQPT 116 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F TFI G+ N +A A +++A+ Y NPL I GLGKTHLL A+ Sbjct: 117 LKPGYTFETFIVGTCNELAHAACRAVAQQPGRQY-----NPLLIFGGAGLGKTHLLHAVG 171 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NA +R P +V+Y T E F A+R + ++ R +D LL+DD+QFL G+ Sbjct: 172 NAFYQRDPRAKVLYTTCEAFTNELIQAVRFDSIGRFQEKYRGLDCLLLDDIQFLAGRERT 231 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E H N+L +S Q+V +D PP EL+ + R+R+R +GG++ L E+ +IL Sbjct: 232 QEELFHTFNALQESGGQIVLTSDDPPRELQGVVKRLRTRFEGGLTADLQPPPSEIMVAIL 291 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 + S+ ++++++V M +AR ++ R L+G N+++ F + +T E+A Sbjct: 292 Q-----SKALAKGMDLSDQVAMFLARQPESNVRVLEGYLNRIIAVSRFQGVEVTLELARR 346 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ L+ +++ +E++ + VA Y + +L S+R+ R V RPRQVAM+L++ +T + Sbjct: 347 VVGPLMA---QRQVSVEEVLQTVAARYGVRVGELKSSRKTRDVTRPRQVAMFLARQLTGQ 403 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+PEIGR G +DH+TV+ V+K++ + + L +E+ L+R + E Sbjct: 404 SYPEIGRALGGKDHSTVVKGVKKIQGQMAREAALAEEIRTLERELLE 450 >gi|113953832|ref|YP_731136.1| chromosomal replication initiation protein [Synechococcus sp. CC9311] gi|123327711|sp|Q0I8T6|DNAA_SYNS3 RecName: Full=Chromosomal replication initiator protein DnaA gi|113881183|gb|ABI46141.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9311] Length = 468 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 249/474 (52%), Gaps = 16/474 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E+ ++ V L++ + + +W + + S ++ L P +F W++ Y Sbjct: 1 MELTGSELWDKVQHALQSNLSKPTFETWIRPARCSSFQDRMLTLQAPNSFASNWLRKNYA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-KQT 149 TI ++ QE V +L + T S T P+ + +++ + + Sbjct: 61 STIAEVAQEIIGHPIEVIVLAQDDEDAESGSTPLSRVSTSNQPLASTAAEAAAAVSAPPS 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 +P L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGK Sbjct: 121 TAPRRLPGLNMRYVFNRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLGK 175 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P RV Y++ E F +AIR + +D R DL+L+DD+Q Sbjct: 176 THLMQAIGHYRLEIDPEARVFYVSTETFTNDLITAIRKDGMQAFRDRYRAADLILVDDIQ 235 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L D+ +Q+V A+DRPPS++ L R+ SR G+ + D Sbjct: 236 FIEGKEYTQEEFFHTFNALHDAGRQIVIASDRPPSQIPRLQERLISRFSMGLIADIQAPD 295 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL+ + E ++ + +++ +++ T++ REL+GA + V F+ I Sbjct: 296 LETRMAILQK-----KAEQERVALPRDLIQYISGRFTSNIRELEGALTRAVA---FSSIT 347 Query: 389 TAEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E ++ ++ +G+ + + + V++ ++++ +D+ S+ R R V + RQV M+ Sbjct: 348 GIPMTVESVAPMLDPSGQGVDVTPQQVIEKVSEVFDVTADDMRSSSRRRAVSQARQVGMF 407 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + T S P IG FG +DHTTV++A+ +VEK L TD L +V+ +K L+ Sbjct: 408 LMRQGTDLSLPRIGDTFGGKDHTTVIYAIEQVEKKLATDPQLASQVQRVKDLLQ 461 >gi|225028838|ref|ZP_03718030.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353] gi|224953834|gb|EEG35043.1| hypothetical protein EUBHAL_03125 [Eubacterium hallii DSM 3353] Length = 448 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 144/477 (30%), Positives = 256/477 (53%), Gaps = 42/477 (8%) Query: 31 LEVNCESIFTIVSSRL--KNQVGPDVYASWFQRLKFHSVLHNIVHLS-VPTNFLKAWIKN 87 ++ ES + + + L ++++ +W Q L ++ + + V +IK+ Sbjct: 5 MKELIESKWQEILNILVKEHEISEVAVNTWIQPLIIQTITDDSITFFMVRGPRGIEFIKH 64 Query: 88 RYLE-TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 +Y + ++ ++ + + + A P E Sbjct: 65 KYYDIYLSMAIEQVTGKQFKILFTDSNSAAPKSEP------------------------K 100 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K ++ + L+ R+ F TF+ G +N++A + ++AE Y NPLF++ G Sbjct: 101 KVSVPAEYIGNLNPRYTFDTFVVGPTNKMAHAVSVAVAESPGGAY-----NPLFLYGGAG 155 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+ +IA+ I +P+LRV+Y+T+E F +++ + +D RNID+LLID Sbjct: 156 LGKTHLMHSIAHHIINNRPDLRVLYVTSEKFTNELIDSLKHDKNKEFRDKYRNIDVLLID 215 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N L ++ KQ+V ++D+ P E+ +L+ R+RSR + G++ + Sbjct: 216 DIQFIIGKESTQEEFFHTFNELHEAKKQIVISSDKHPREIATLEERLRSRFEWGITADIQ 275 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSF 384 DYE + +ILK + E L+IN+EV+ +VA + ++ REL+GA N++ VF + Sbjct: 276 PPDYETKMAILKK-----RAELEHLDINQEVMQYVATNINSNIRELEGALNKIYVFANLE 330 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T E+A+ L + K++ + I +VA+HYNIS +D++S ++ + + PRQ+ Sbjct: 331 KKPVTLELAENALKDTIE--CQKEVTPQLIMDVVAEHYNISVSDIISKKKNKEIANPRQI 388 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYLS+ T S IG+ G+RDHTTV+H K+ KMLETD LK ++++ + ++ Sbjct: 389 CMYLSRKYTDYSLQNIGKIMGNRDHTTVIHGHDKIGKMLETDENLKSNLDIIIKKLN 445 >gi|116491819|ref|YP_803554.1| chromosomal replication initiation protein [Pediococcus pentosaceus ATCC 25745] gi|122266717|sp|Q03I60|DNAA_PEDPA RecName: Full=Chromosomal replication initiator protein DnaA gi|116101969|gb|ABJ67112.1| DNA replication ATPase initiation [Pediococcus pentosaceus ATCC 25745] Length = 446 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 131/469 (27%), Positives = 237/469 (50%), Gaps = 33/469 (7%) Query: 37 SIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ + + + + + +W + + S+ ++I+ + V ++ + + +E Sbjct: 6 DLWNNIKNSFEKDDSMSKASFGAWVETAEPISLENHIMKIKVLSSLHRDYWTKHLIEKFV 65 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + + E + T ++ K+T + Sbjct: 66 EYAYQFTDQDITPEFVTEDE-------------------FKTQQAERSATSKKETKASTE 106 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+SR+ F TF+ GS N++A AA ++++ Y NPLF + VGLGKTHL+ Sbjct: 107 DTQLNSRYTFDTFVIGSGNQMAHAAAMAVSDEPGVLY-----NPLFFYGGVGLGKTHLMH 161 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ P RV Y+T+E F F ++I+ N + RN+DLLL+DD+QF K Sbjct: 162 AIGHQLLENDPKTRVKYVTSEAFTNDFINSIQKNKTEEFHEKYRNVDLLLVDDVQFFADK 221 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H +L ++ KQ+V +DR P+E+ L R+ SR + G+S+ + + E R Sbjct: 222 EATQEEFFHTFEALYNAQKQIVLTSDRLPNEIPKLQERLVSRFKWGLSIDITPPNLETRI 281 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL+ + + + I +E L ++A + ++ REL+GA ++ +T ++ Sbjct: 282 AILR-----EKAQADNVEIPDETLEYIANRIDSNIRELEGAMARIQAYAKLQNAAITTDL 336 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L L + I IQ VAK+++++ DL +R++++V PRQ+AMYLS+ + Sbjct: 337 ASDALRSLNFGSNLSHITIPMIQDKVAKYFHVTVADLKGKKRMKSIVIPRQIAMYLSREL 396 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P+IG FG +DHTTV+H+ K++ LE D L ++V LK + Sbjct: 397 TESSLPKIGTEFGGKDHTTVIHSFDKIKAELEKDEELARQVGDLKSELK 445 >gi|169627109|ref|YP_001700758.1| chromosomal replication initiation protein [Mycobacterium abscessus ATCC 19977] gi|226735827|sp|B1MDH6|DNAA_MYCA9 RecName: Full=Chromosomal replication initiator protein DnaA gi|169239076|emb|CAM60104.1| Chromosomal replication initiator protein DnaA [Mycobacterium abscessus] Length = 491 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 136/498 (27%), Positives = 250/498 (50%), Gaps = 41/498 (8%) Query: 32 EVNCE--SIFTIVSSRLKNQ----------VGPDVYASWFQRLKFHSVLHNIVHLSVPTN 79 E+N + +++ V + L + P +W +K ++ LSVP++ Sbjct: 4 ELNSQFTAVWNTVVAELNGDDNQYLSSFPPLTPQQ-RAWLTLVKPLTMAEGFALLSVPSS 62 Query: 80 FLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS 139 F++ I+ I + VE+ VR A E + + + ++ + + Sbjct: 63 FVQNEIERHLRGPIVEALSRRLGE--NVELGVRIAAPAPGEDSEVAGAAPEVELDEVDET 120 Query: 140 KSPIILGKQTISPVF-------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 + ++ F + L++R+ F +F+ G+SNR + AA +++E Sbjct: 121 TEALASAHESWPSYFINRPGGADKAETPDTSLNARYTFESFVIGASNRFSHAAAVAVSEA 180 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 + Y NPLFI GLGKTHLL A N + + P +RV Y++ E F F +++R Sbjct: 181 PARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLR 235 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 D+ + K S R+ID+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP L Sbjct: 236 DDRRVAFKRSYRDIDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKGL 295 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 +L+ R+R+R + G+ + + E R +IL+ + + +L++ ++VL +A + Sbjct: 296 ATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMDRLDVPDDVLELIASRIE 350 Query: 366 TSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 + REL+GA ++ S + +A+ +L L+ ++ I + A++++ Sbjct: 351 RNIRELEGALIRVTAFASLNKSPIELSLAEIVLRDLIPDANAIQISAATIMAVTAEYFDT 410 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A +KV + Sbjct: 411 TVEELRGPGKTRALAQARQIAMYLCRELTDLSLPKIGQTFG-RDHTTVMYADKKVRGEMA 469 Query: 485 TDITLKKEVELLKRLISE 502 + V+ L I + Sbjct: 470 QRREVFDHVKELTARIRQ 487 >gi|28867244|ref|NP_789863.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato str. DC3000] gi|38257476|sp|Q88BK3|DNAA_PSESM RecName: Full=Chromosomal replication initiator protein DnaA gi|28850478|gb|AAO53558.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato str. DC3000] Length = 511 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 222/388 (57%), Gaps = 18/388 (4%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRV 175 T PS P+ S+ +Q V G S L+ F F F+EG SN++ Sbjct: 134 ATHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQL 193 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 194 ARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSE 248 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV Sbjct: 249 RFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQV 308 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ Sbjct: 309 ILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPH 363 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 + +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++ Sbjct: 364 DAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDN 422 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVL Sbjct: 423 IQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVL 482 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ E+D ++++ + L R ++ Sbjct: 483 HACRKINELKESDADIREDYKNLLRTLT 510 >gi|153827642|ref|ZP_01980309.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MZO-2] gi|149737880|gb|EDM52785.1| chromosomal replication initiator protein DnaA [Vibrio cholerae MZO-2] Length = 416 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 132/428 (30%), Positives = 225/428 (52%), Gaps = 22/428 (5%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 RL+ ++ ++ W + L+ + N + L P F+ W++++YL I +L E Sbjct: 1 MQRLQEELPAAEFSMWVRPLQA-ELNDNTLTLFAPNRFVLDWVRDKYLNNINRLLMEFSG 59 Query: 103 RI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII-----LGKQTISPVF 154 E+ R V P ++ + S +++ I Sbjct: 60 NDVPNLRFEVGSRPVVAPKPAPVRTAADVAAESSAPAQLAQRKPIHKTWDDDSAAADITH 119 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF++ GLGKTHLL Sbjct: 120 RSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGAAY-----NPLFLYGGTGLGKTHLLH 174 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+ NA + PN +VVY+ +E F+ A+++N K R++D LLIDD+QF K Sbjct: 175 AVGNAIVDNNPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFANK 234 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E R Sbjct: 235 ERSQEEFFHTFNALLEGNQQIILTSDRYPKEISGVEDRLKSRFGWGLTVAIEPPELETRV 294 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ +F +T + Sbjct: 295 AIL-----MKKAEDHQIHLPDEVAFFIAKRLRSNVRELEGALNRVIANANFTGRPITIDF 349 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ+AM L+K + Sbjct: 350 VREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQLAMALAKEL 408 Query: 453 TPRSFPEI 460 T S PEI Sbjct: 409 TNHSLPEI 416 >gi|296267999|ref|YP_003650631.1| chromosomal replication initiator protein DnaA [Thermobispora bispora DSM 43833] gi|296090786|gb|ADG86738.1| chromosomal replication initiator protein DnaA [Thermobispora bispora DSM 43833] Length = 527 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 143/533 (26%), Positives = 252/533 (47%), Gaps = 72/533 (13%) Query: 31 LE-VNCESIFTIVSSRLKNQ-VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 +E V+ ++++ L ++ V ++ Q + ++++ + L+ P +F K I+ R Sbjct: 1 MEGVDLDAVWARALRTLLDEGVSGQQ-RAFLQMTQPSGLINDTILLAAPNDFAKEVIEVR 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPS--VEKTASSPSITKLS---PINTNISKSPI 143 I +E R + ++V A+P V++ P P + ++ Sbjct: 60 LRPLIAHALAQELGRPVRIAVMVDPSAVPDAGVDRPDRQPMTQPGQTGYPQHRPQTQPGF 119 Query: 144 ILGKQTISPVFGSP---------------------------------------------- 157 G T SP + Sbjct: 120 STGLTTGSPGLATGGESAARHEAGPYSSSVPRPGGLAGEPRPEPRPEPAHQRWDSRPSRS 179 Query: 158 ------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L++++ F TF+ G+SNR A V NPLFI+ GLGKTH Sbjct: 180 SSEPARLNAKYTFETFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGDSGLGKTH 234 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI + + RV Y+++E F F ++IRD+ A + R +D+LL+DD+QFL Sbjct: 235 LLHAIGHYAQSLYDGARVRYVSSEEFTNEFINSIRDHKADEFRARYRAVDILLVDDIQFL 294 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 +GK Q EF H N+L +++KQ+V ++DR P +L +L+ R+R+R + G+ + + E Sbjct: 295 EGKEQTQEEFFHTFNTLHNASKQIVISSDRAPKQLVTLEDRLRNRFEWGLITDVQPPELE 354 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + L EVL ++A ++T+ REL+GA ++ S + Sbjct: 355 TRIAILRK-----KAVQEGLAAPPEVLEYIASRISTNIRELEGALIRVTAFASLNRQPVD 409 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A+ +L L++ + ++ I I A+++ +S +DL + R R +V RQ+AMYL+ Sbjct: 410 IELAEMVLKDLISEESSPEITISLIMSTTAEYFGVSIDDLCGSSRSRALVTARQIAMYLA 469 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IG++FG RDHTTV+HA RK+ ++ ++ +V L I + Sbjct: 470 RELTDLSLPKIGQQFGGRDHTTVMHAERKIRSLMAERRSMYNQVNELTTRIKQ 522 >gi|315650192|ref|ZP_07903267.1| DNA-directed DNA replication initiator protein [Eubacterium saburreum DSM 3986] gi|315487549|gb|EFU77857.1| DNA-directed DNA replication initiator protein [Eubacterium saburreum DSM 3986] Length = 462 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 241/473 (50%), Gaps = 31/473 (6%) Query: 39 FTIVSSRLKN--QVGPDVYASWFQRLKFHSVLHN-----IVHLSVPTNFLKAWIKNRYLE 91 + + + L++ ++ P + +W + + S+ + + ++VP+ K ++ +Y Sbjct: 9 WEKIITFLRDDYELSPVSFNTWIKPMIPTSIEKDSRGNFTLIITVPSMPFKTYVTKKYSL 68 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 ++ +E ++ + +K K P+N Sbjct: 69 SLAVAIEEIT--FIRCNVVFKEKKEQESKKVQKKLIDNKRHPVND--------------L 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + S L+ + F TF+ G SN +A A ++AE NP FI+ VGLGKTH Sbjct: 113 KLLSSNLNPAYTFDTFVVGKSNDLAHATAIAVAESPGSQNPGEHYNPFFIYGGVGLGKTH 172 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ +IA+ ++ P+ ++Y+++E F+ + A++++ + RN+D+LLIDD+QF+ Sbjct: 173 LMHSIAHYILEHNPDANILYVSSEKFLNEYIDALKNSNLAEYRAKYRNVDVLLIDDIQFI 232 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK IQ E H N+L + KQ++ ++D+PP EL++L+ R+RSR GV+V + D+E Sbjct: 233 GGKDAIQEELFHTFNALYEQKKQIILSSDKPPMELKNLEERLRSRFAWGVAVEIFSPDFE 292 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP--IL 388 R +IL+ S++E NI+ EV+ +A + ++ R L+GA N+L + Sbjct: 293 TRMAILR-----SKEERDGKNIDNEVIQFIATNIKSNIRMLEGALNKLYAMSRLNKNQEI 347 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A +L ++ K+ E I +VA H+NI+ +L + R V R + +YL Sbjct: 348 DIDLAKSVLKDMITPDAPTKITSEYIATVVADHFNITVAELKAKGRKEPVATARHITVYL 407 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT + +IG+ GDRDH+T++++ + K + D L + +E +K+ IS Sbjct: 408 CRKMTNDTQTKIGQFLGDRDHSTIVNSEDVITKRITADSELNQTIETIKKKIS 460 >gi|91205663|ref|YP_538018.1| chromosomal replication initiation protein [Rickettsia bellii RML369-C] gi|123084564|sp|Q1RI85|DNAA_RICBR RecName: Full=Chromosomal replication initiator protein DnaA gi|91069207|gb|ABE04929.1| Chromosomal replication initiator protein DnaA [Rickettsia bellii RML369-C] Length = 463 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 170/470 (36%), Positives = 283/470 (60%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NSVNVWSNVTQDLYNYYGEALYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYSVVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ VEI+ + LP+ + + I ++ S I Sbjct: 74 LQLFQHYNNAIKTVEIITKE--LPASNQATLELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S D RF F F+ G+ N +A A++ V NPLF++ VGLGKTHL+ Sbjct: 124 --STFDIRFTFDNFVVGAPNELAYAVARA---VAESSSAVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVMSFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L+ ++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDDIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 IL+ S+ E + + ++V+ +A + ++ REL+GA N+++ +F A +T E Sbjct: 299 LGILE-----SKIEQMNVKVPKDVIDFLASKIVSNVRELEGALNKVIAHSNFTAKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S RR+RT+ RPRQ+AMYLSKI Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVANRYNIKLSDMSSPRRMRTIARPRQIAMYLSKI 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE+D+ L++E+ L+ +++ Sbjct: 413 LTPKSLVDIGKKFGKKDHTTVMHAIKKVEELLESDLELREEINLMMKILQ 462 >gi|217976201|ref|YP_002360348.1| chromosomal replication initiation protein [Methylocella silvestris BL2] gi|217501577|gb|ACK48986.1| chromosomal replication initiator protein DnaA [Methylocella silvestris BL2] Length = 506 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 218/506 (43%), Positives = 305/506 (60%), Gaps = 30/506 (5%) Query: 23 NVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK 82 V+ + + + + RL+ VG DV++SWF RL+ S+ LSVPT FLK Sbjct: 5 RTSVNDKSQDRGDSEAWMRICRRLRADVGEDVFSSWFGRLELDSLSDGTAALSVPTKFLK 64 Query: 83 AWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS--PSITKLSPINTNISK 140 +WI++ Y E + E ++ + + +RS P + A + S ++ K Sbjct: 65 SWIQSHYAEKLLAALTSEFPMVKRLVVTIRSSNRPPLGAPARADIEDEESGSNLSQGARK 124 Query: 141 SPIILGKQTISPVF-----------------------GSPLDSRFVFSTFIEGSSNRVAL 177 +P + + F GSPLD R FSTF G SN++AL Sbjct: 125 TPTQDAAASGARGFAAQRPYEPQTAKTRAEGEADIIAGSPLDGRLTFSTFAAGRSNQLAL 184 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AAQ + + NPL++HASVGLGKTHLLQA+A+ + + + RV+YLTAE F Sbjct: 185 AAAQR--VAAATPEERLPYNPLYLHASVGLGKTHLLQAVAH--MAQTMSRRVIYLTAERF 240 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAA 297 M+ F SA++ A+ K+ LR ID+L+IDD+QFLQGK IQ EFCH LN+L+D+ +Q+V A Sbjct: 241 MYGFVSALKAQTAIAFKEKLRGIDILVIDDIQFLQGKSIQQEFCHTLNALIDAHRQIVIA 300 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 ADRPPSELESLD R+RSRL GG+ V +G D ++R IL+ R+A ++ P + V Sbjct: 301 ADRPPSELESLDERVRSRLAGGLCVEIGGLDEQLRVRILEGRIAAAKHAHPNFEVPSAVT 360 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQR 416 VA + T+GR+LDGA N+L+ S L E A+ + LV + K+++IEDIQ+ Sbjct: 361 AFVAHAIQTNGRDLDGAVNRLLAHASLNGAPLEVETAELAIRDLVRAHDPKRIKIEDIQK 420 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 +VA H+N+SR D+LS+RR VVRPRQ+AMYLSK +T RS PEIGRRFG RDHTTVLHAV Sbjct: 421 LVATHFNVSRADILSSRRTANVVRPRQIAMYLSKALTLRSLPEIGRRFGGRDHTTVLHAV 480 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 RK++ + D L +E+ELLKR++ E Sbjct: 481 RKIDGLAAKDGALSEEIELLKRMLME 506 >gi|314926333|gb|EFS90164.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA3] Length = 500 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 235/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T + ++ V +W ++ + ++VP F + ++++ + Sbjct: 40 LNEAWTNILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 94 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 95 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTEPSARPPTT 154 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 155 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 209 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 210 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 269 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 270 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 329 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 330 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 384 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 385 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 444 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 445 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 499 >gi|168334923|ref|ZP_02693043.1| DnaA [Epulopiscium sp. 'N.t. morphotype B'] Length = 445 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 258/471 (54%), Gaps = 32/471 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ + + ++ + + +WF++ K ++ + + ++V + K+ + RY + Sbjct: 1 MSFNEKWNSILKLVEIETSSVSFNTWFKQTKLSNISDDTLTITVKDDLSKSILSTRYFDL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + +E +++ S+ K A++ I P+N Sbjct: 61 IRTSAVTVLDKKYNLEFIIKESNPLSITKIATN-RIAIQDPLNAP--------------- 104 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ ++ F++F+ G+SNR+A A ++A++ + Y NPLF++ VGLGKTHL Sbjct: 105 ---SNLNPKYTFNSFVVGNSNRMAHAATMAVAKMPAKSY-----NPLFLYGGVGLGKTHL 156 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +Q+IA+ ++K PNL+V+Y + E F ++IRD+ ++ RNID+LLIDD+QF+ Sbjct: 157 MQSIAHFTLKHHPNLKVLYTSTEKFTNELINSIRDDQNNAFRNKYRNIDILLIDDIQFIA 216 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L ++ KQ++ ++DR P E+E L+ R+RSR + G+ L D E Sbjct: 217 GKERTQEEFFHTFNTLYEANKQIIISSDRTPKEIEFLESRLRSRFEWGLIADLQPPDLET 276 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +ILK + E + I+ VL +A T+ ++ REL+GA N+++ S + + Sbjct: 277 RIAILKK-----KAEMENITIDSNVLQFIAETIISNIRELEGALNRIIAFSSLSNETINL 331 Query: 391 EIADELLSH-LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ +E L +++ + IQ +VA YNI+ ++LLS++RVRT+ RPRQ+AMYL Sbjct: 332 ELTEEALKDTILSKESISIITPSYIQSIVAMTYNITISELLSSKRVRTISRPRQIAMYLC 391 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S +I +FG RDHTT+LH K+ K L D L + L+ I Sbjct: 392 RKLTNLSLTKIAEQFGGRDHTTILHGYDKIAKELVEDEQLAYFITQLELKI 442 >gi|301384271|ref|ZP_07232689.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tomato Max13] gi|302063879|ref|ZP_07255420.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tomato K40] gi|302131962|ref|ZP_07257952.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 511 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 222/388 (57%), Gaps = 18/388 (4%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRV 175 T PS P+ S+ +Q V G S L+ F F F+EG SN++ Sbjct: 134 ATHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQL 193 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 194 ARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSE 248 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV Sbjct: 249 RFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQV 308 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ Sbjct: 309 ILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPH 363 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 + +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++ Sbjct: 364 DAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDN 422 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVL Sbjct: 423 IQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVL 482 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ E+D ++++ + L R ++ Sbjct: 483 HACRKINELKESDADIREDYKNLLRTLT 510 >gi|313671971|ref|YP_004050082.1| chromosomal replication initiator protein dnaa [Calditerrivibrio nitroreducens DSM 19672] gi|312938727|gb|ADR17919.1| chromosomal replication initiator protein DnaA [Calditerrivibrio nitroreducens DSM 19672] Length = 443 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 238/468 (50%), Gaps = 32/468 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ V + + P + +W + LK + +++ + P F K W++++YLET+ K Sbjct: 3 NNLWEEVLKLSEVKFSPQIVNTWLKPLKILDMRGDLITIEAPNRFYKNWVEDKYLETLKK 62 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 +F EE++ ++I++ S E+ + + +N + Sbjct: 63 IFLEEYNIQSEIQIVIGSSTQSYREQPQDQTVKAQNTILNNS------------------ 104 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F F+ GSSN+ AA ++AE Y NPLFI+ VGLGKTHL+ A Sbjct: 105 TNLNKQYTFDNFVVGSSNQFPHAAALAVAEGYFQTY-----NPLFIYGGVGLGKTHLMHA 159 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N +++ P L+++Y+++E F A++ ++ RNIDLLL DD+QFL GK Sbjct: 160 IGNKILEKFPKLKILYISSEAFTNEMIYALKSKTMDIFREKYRNIDLLLFDDVQFLAGKT 219 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF + NSL D KQ+V +D+ P+E+ L+ R+RSR G+ + + + + Sbjct: 220 RSTEEFFYTFNSLYDMQKQIVLTSDKEPNEIPDLEERLRSRFSWGLVADIQPPSVDEKVA 279 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTT-SGRELDGAFNQLVFRHSF-APILTAEI 392 I+ + + E + ++ EV +A + + R+L GA +L +F +T E+ Sbjct: 280 II-----LKRSEIMNIYVSNEVAHFLAENLKGDNIRDLIGALIRLNAFSTFHNEPITIEL 334 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L + + + E + V ++N+ + ++ S R R + PRQVAMY+ + Sbjct: 335 AKKALEKFI-IKKDIIVTPEAVINAVCSYFNVKQQEIKSKNRSRVISYPRQVAMYILREK 393 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +I FG R+H+TVLH++++++ +++D LK + + R I Sbjct: 394 LNLPLQDIANIFGGRNHSTVLHSIKEIQNRMQSDQELKSVINTIIRNI 441 >gi|240172091|ref|ZP_04750750.1| chromosomal replication initiation protein [Mycobacterium kansasii ATCC 12478] Length = 514 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 139/513 (27%), Positives = 244/513 (47%), Gaps = 60/513 (11%) Query: 37 SIFTIVSSRLKNQVGPD---------------VYASWFQRLKFHSVLHNIVHLSVPTNFL 81 S++ V S L ++ D +W ++ +++ LSVP++F+ Sbjct: 11 SVWNAVVSELNGELNADGIAHTGTTLTTPLTPQQRAWLNLVQPLTIVEGFALLSVPSSFV 70 Query: 82 KAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS 141 + I+ IT +++ VR P S + + S Sbjct: 71 QNEIERHLRTPITDALSRRLG--HQIQLGVRIAPPPPTTDADEGAQPADDSGLEMSRETS 128 Query: 142 PIILGKQ------------------------------TISPVFGSPLDSRFVFSTFIEGS 171 P T++ G+ L+ R+ F TF+ G+ Sbjct: 129 PETPEAPGDTDDADETAGGPRPGWPTYFTKRPSGTADTVAATGGTSLNRRYTFDTFVIGA 188 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SNR A A +IAE + Y NPLFI GLGKTHLL A N + + P +RV Y Sbjct: 189 SNRFAHAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYTQRLFPGMRVKY 243 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDS 290 ++ E F F +++RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ Sbjct: 244 VSTEEFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNA 303 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L Sbjct: 304 NKQIVISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERL 358 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKM 409 + ++VL +A ++ + REL+GA ++ S + +A+ +L L+ ++ Sbjct: 359 AVPDDVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADATAMQI 418 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 I A++++ + +L + R++ + RQ+AMYL + +T S P+IG+ FG RDH Sbjct: 419 SAATIMAATAEYFDTTVEELRGPGKTRSLAQSRQIAMYLCRELTDLSLPKIGQAFG-RDH 477 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 TTV++A RK+ + + V+ L I + Sbjct: 478 TTVMYAQRKILSEMAERREVFDHVKELTTRIRQ 510 >gi|307243408|ref|ZP_07525565.1| chromosomal replication initiator protein DnaA [Peptostreptococcus stomatis DSM 17678] gi|306493218|gb|EFM65214.1| chromosomal replication initiator protein DnaA [Peptostreptococcus stomatis DSM 17678] Length = 454 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 144/472 (30%), Positives = 255/472 (54%), Gaps = 22/472 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWF-QRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ ++++T +LK ++ +F + ++ +NI++LS K + + +Y + Sbjct: 1 MDVKNLWTSAQQKLKGVFPKSIFTLYFNENTVPIAINNNILYLSGDNR-SKEFFEKQYKD 59 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I F E + I+ V +L + T + K + Sbjct: 60 KILVAFDELAANIKDVIVLTNDDTTDTEINTNIE---------KNSNPKENSEKIMDLAT 110 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + S L+ ++ F+TF+ GSSN +A+ A Q +AE D T NPLF++ VGLGKTH Sbjct: 111 SIANSNLNPKYTFNTFVVGSSNAMAVAACQRVAEYDE----TANDNPLFLYGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AI + ++R P+ +++Y+++E F +AIR+ ++ RN+D+ +IDD+QF+ Sbjct: 167 LMHAIGHRVLERDPSKKILYVSSETFTNEMVTAIREKKNSEFREKYRNVDIFMIDDVQFV 226 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK +Q E H N + + K+++ ++D+PP ++ L+ R+RSR G+ + DY Sbjct: 227 AGKNSVQEELFHTFNDVHGAGKKIILSSDKPPKDIPELEERLRSRFVWGLITDIQAPDYG 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL+N + E+ KL+I+ +V ++A V ++ REL+GA N+++ + A + Sbjct: 287 TRMAILQN-----KAENDKLDIDSDVFEYIADNVKSNIRELEGALNKVILYSNLSAKPMN 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A E L ++ + TK++ I I+ MVA YNIS DL+S +R + + PRQVAMY+S Sbjct: 342 LATAKEALKDVLVSYTTKEVNILRIKEMVADAYNISVEDLISKKRTKNIAFPRQVAMYIS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + + S P IG FG RDHTTV+HAV K+ ++ +K ++E + + Sbjct: 402 RNLLDLSLPAIGDEFGGRDHTTVMHAVNKISDDIQKSEEVKIKIEKIISDLD 453 >gi|288573679|ref|ZP_06392036.1| chromosomal replication initiator protein DnaA [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569420|gb|EFC90977.1| chromosomal replication initiator protein DnaA [Dethiosulfovibrio peptidovorans DSM 11002] Length = 440 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 135/469 (28%), Positives = 239/469 (50%), Gaps = 33/469 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + E ++ + + ++ W + S+ ++ L V +F+K I+NR+ + + Sbjct: 3 DVEKLWQDIVAASTPKLPDGTVDVWLKTCVPLSMEDEVILLDVANDFIKVQIQNRFQKIL 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ G + + + ++ + K Sbjct: 63 EDTMKDLG---YGKGLKLNVGTGDNRKEQERAERTIKPESQGK----------------- 102 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++FS+F+ G SNR+A A+ ++AE Y NPLFI VGLGKTHL+ Sbjct: 103 -VSGLNPNYLFSSFVVGKSNRLAHAASLAVAESPGAAY-----NPLFIWGGVGLGKTHLM 156 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + +++ NL+V Y+++E F ++I++N + R +DLLLIDD+QFL G Sbjct: 157 HAIGHHALQNDRNLKVGYVSSEKFTNELITSIKNNRTAEFRARYRTMDLLLIDDIQFLAG 216 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H NSL D KQ+V ++DRPP +++S++ R+ SR + G+ + DYE R Sbjct: 217 KESTQEEFFHTFNSLHDGKKQIVLSSDRPPKDIKSIEDRLVSRFEWGLVTDIQSPDYETR 276 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL + E + E+V+ ++A+ V ++ REL+GA N+++ +T E Sbjct: 277 IAILTK-----KAEFRNYPMPEDVINYLAQNVPSNIRELEGALNRVIACAELNSEPVTVE 331 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L +V + I+ IQ++VA+ + + DL S++R + RQ+AM++ + Sbjct: 332 NTSEWLKDIVRHTSKGPVSIDLIQQIVAEECSFTVEDLTSSKRTSEIALARQIAMFICRK 391 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S +IG F +DHTTVLHA +K+E++L + +K V+ ++ + Sbjct: 392 HTESSLQQIGSAFNKKDHTTVLHAQKKIEQLLLDNARVKGIVDNVESKL 440 >gi|213968441|ref|ZP_03396584.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato T1] gi|213926729|gb|EEB60281.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. tomato T1] Length = 509 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 222/388 (57%), Gaps = 18/388 (4%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRV 175 T PS P+ S+ +Q V G S L+ F F F+EG SN++ Sbjct: 132 ATHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQL 191 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 192 ARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSE 246 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV Sbjct: 247 RFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQV 306 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ Sbjct: 307 ILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPH 361 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 + +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++ Sbjct: 362 DAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDN 420 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVL Sbjct: 421 IQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVL 480 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ E+D ++++ + L R ++ Sbjct: 481 HACRKINELKESDADIREDYKNLLRTLT 508 >gi|153808748|ref|ZP_01961416.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185] gi|149128574|gb|EDM19792.1| hypothetical protein BACCAC_03047 [Bacteroides caccae ATCC 43185] Length = 470 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 128/478 (26%), Positives = 241/478 (50%), Gaps = 15/478 (3%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E N ++ +K+ V Y +WF + + L +P+ F ++ R+ Sbjct: 1 MIESNHAVLWNRCLEVIKDNVPETTYNTWFAPIVPLKYEDKTLILQIPSQFFYEILEERF 60 Query: 90 LETITKLFQEEHSRIQG--VEILVRSVALPSVEKT-ASSPSITKLSPINTNISKSPIILG 146 ++ I K + ++V ++P+ +S T ++P + + Sbjct: 61 VDLIRKTLYKVIGEGTKLMYNVMVDKTSIPNQTVNLEASNRSTAVTPKSIFGANKAPNFL 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ + F FIEG SN+++ + A+++A+ NPLF++ + G Sbjct: 121 QAPAVQDLDPHLNPNYNFENFIEGYSNKLSRSVAEAVAQKPG----GTAFNPLFLYGASG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID+L+ID Sbjct: 177 VGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIID 236 Query: 267 DMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L Sbjct: 237 DIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAELE 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 E+R +IL+N + L EV+ ++A V S R+L+G ++ R + F Sbjct: 297 KPTVELRKNILRN-----KIHRDGLQFPPEVIDYIAENVNESVRDLEGIVIAIMARSTIF 351 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++A ++ +V+ ETK + I+DI ++V KH+++ + + + R R VV+ RQ+ Sbjct: 352 NKEIDLDLAQHIVHGVVHN-ETKAVTIDDILKVVCKHFDLEPSAIHTKSRKREVVQARQI 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + EV+ ++ L+ + Sbjct: 411 AMYLAKNHTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFHAEVQEIESLLKK 468 >gi|50841497|ref|YP_054724.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes KPA171202] gi|289424325|ref|ZP_06426108.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK187] gi|289427361|ref|ZP_06429074.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J165] gi|295129530|ref|YP_003580193.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK137] gi|61212561|sp|Q6ABL5|DNAA_PROAC RecName: Full=Chromosomal replication initiator protein DnaA gi|50839099|gb|AAT81766.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes KPA171202] gi|289155022|gb|EFD03704.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK187] gi|289159291|gb|EFD07482.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J165] gi|291377061|gb|ADE00916.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes SK137] gi|313771066|gb|EFS37032.1| replication initiator protein DnaA [Propionibacterium acnes HL074PA1] gi|313792568|gb|EFS40654.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA1] gi|313803569|gb|EFS44751.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA2] gi|313814221|gb|EFS51935.1| replication initiator protein DnaA [Propionibacterium acnes HL025PA1] gi|313821532|gb|EFS59246.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA1] gi|314963873|gb|EFT07973.1| replication initiator protein DnaA [Propionibacterium acnes HL082PA1] gi|314969083|gb|EFT13181.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA1] gi|314985203|gb|EFT29295.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA1] gi|314987112|gb|EFT31204.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA2] gi|315097162|gb|EFT69138.1| replication initiator protein DnaA [Propionibacterium acnes HL038PA1] gi|315107498|gb|EFT79474.1| replication initiator protein DnaA [Propionibacterium acnes HL030PA1] gi|315109866|gb|EFT81842.1| replication initiator protein DnaA [Propionibacterium acnes HL030PA2] gi|327444469|gb|EGE91123.1| replication initiator protein DnaA [Propionibacterium acnes HL013PA2] gi|327446723|gb|EGE93377.1| replication initiator protein DnaA [Propionibacterium acnes HL043PA2] gi|328757976|gb|EGF71592.1| replication initiator protein DnaA [Propionibacterium acnes HL020PA1] gi|332674399|gb|AEE71215.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes 266] Length = 500 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 235/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T + ++ V +W ++ + ++VP F + ++++ + Sbjct: 40 LNEAWTNILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 94 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 95 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTEPSARPTTT 154 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 155 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 209 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 210 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 269 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 270 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 329 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 330 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 384 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 385 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 444 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 445 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 499 >gi|314980257|gb|EFT24351.1| replication initiator protein DnaA [Propionibacterium acnes HL072PA2] Length = 500 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 235/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T + ++ V +W ++ + ++VP F + ++++ + Sbjct: 40 LNEAWTNILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 94 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 95 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTEPSARPTTT 154 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 155 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 209 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 210 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 269 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 270 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 329 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 330 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 384 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 385 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 444 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 445 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 499 >gi|225873717|ref|YP_002755176.1| chromosomal replication initiator protein DnaA [Acidobacterium capsulatum ATCC 51196] gi|225794217|gb|ACO34307.1| chromosomal replication initiator protein DnaA [Acidobacterium capsulatum ATCC 51196] Length = 478 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 144/481 (29%), Positives = 239/481 (49%), Gaps = 32/481 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + + L+ +V Y +W + +F V + + +PT + +I +RY + I + Sbjct: 13 NPWVRILGALEKKVNRQSYDTWLKPTRFSHVKDRTLIVRIPTTDFR-YIADRYDDLIHEA 71 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 + V V A + +P + +P G Q + Sbjct: 72 IENLQLEFD----EVSFVTPEEDPMLARAREDGGFAPAPAHAPNTPGNAGAQRPAQRLNG 127 Query: 156 -------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ R+ F F+ GS N+ A AA+++AE S Y NPLF++ Sbjct: 128 AMPQQSRFDWSTAAQLNPRYTFDAFVIGSGNQFARAAAEAVAERPSKAY-----NPLFLY 182 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 VG+GKTHL+ AI + R P+ + Y++ E F S++R + +D R++DL Sbjct: 183 GGVGMGKTHLMHAIGHEVKLRNPSASICYVSVEKFTNEMISSLRYDKMTTFRDKFRSVDL 242 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QFL K Q EF H N+L ++ KQ+V A+DRPP EL ++ R+RSR + G+ Sbjct: 243 LLIDDIQFLSQKERTQEEFFHTFNALHENMKQIVIASDRPPKELPEIEDRLRSRFEWGLI 302 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + D E + +IL+ + E + + +V + +A V T+ REL+GA +L Sbjct: 303 ADIQPPDLETKVAILQK-----KAESEHVLLPTDVALFIASNVRTNVRELEGALTRLFAW 357 Query: 382 HSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + ++ + L ++T +K+ IE IQR VA+ + + +L R VV Sbjct: 358 SQLNGVEISLATTQQCLKQFIDTQ-VRKITIEAIQRAVAEQFGMRVVELKQKNNSRAVVV 416 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL+K MT S PEIGR+FG + HTTV+H++ K+++ TD L + L+ + Sbjct: 417 PRQIAMYLAKQMTEASLPEIGRQFGGKHHTTVMHSIGKIDEQRRTDKNLNSTLNKLQETL 476 Query: 501 S 501 + Sbjct: 477 N 477 >gi|327457414|gb|EGF04069.1| replication initiator protein DnaA [Propionibacterium acnes HL092PA1] Length = 500 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 235/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T + ++ V +W ++ + ++VP F + ++++ + Sbjct: 40 LNEAWTNILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 94 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 95 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTEPSARPTTT 154 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 155 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 209 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 210 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 269 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 270 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 329 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 330 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 384 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 385 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 444 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 445 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 499 >gi|330961505|gb|EGH61765.1| chromosomal replication initiation protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 512 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 146/387 (37%), Positives = 223/387 (57%), Gaps = 18/387 (4%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVA 176 T + PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 136 THNEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLA 195 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 196 RAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSER 250 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 251 FVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVI 310 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 311 LTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHD 365 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDI 414 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++I Sbjct: 366 AAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNI 424 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 QR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLH Sbjct: 425 QRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLH 484 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ E+D ++++ + L R ++ Sbjct: 485 ACRKINELKESDADIREDYKNLLRTLT 511 >gi|66043272|ref|YP_233113.1| chromosomal replication initiation protein [Pseudomonas syringae pv. syringae B728a] gi|81308685|sp|Q500U7|DNAA_PSEU2 RecName: Full=Chromosomal replication initiator protein DnaA gi|63253979|gb|AAY35075.1| chromosomal replication initiator protein, DnaA [Pseudomonas syringae pv. syringae B728a] gi|330970325|gb|EGH70391.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aceris str. M302273PT] Length = 511 Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 222/388 (57%), Gaps = 18/388 (4%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRV 175 T PS P+ S+ +Q V G S L+ F F F+EG SN++ Sbjct: 134 ATHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQL 193 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 194 ARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSE 248 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV Sbjct: 249 RFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQV 308 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ Sbjct: 309 ILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPH 363 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 + +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++ Sbjct: 364 DAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDN 422 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVL Sbjct: 423 IQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVL 482 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ E+D ++++ + L R ++ Sbjct: 483 HACRKINELKESDADIREDYKNLLRTLT 510 >gi|313765026|gb|EFS36390.1| replication initiator protein DnaA [Propionibacterium acnes HL013PA1] gi|314930919|gb|EFS94750.1| replication initiator protein DnaA [Propionibacterium acnes HL067PA1] gi|315099342|gb|EFT71318.1| replication initiator protein DnaA [Propionibacterium acnes HL059PA2] Length = 500 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 235/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T + ++ V +W ++ + ++VP F + ++++ + Sbjct: 40 LNEAWTNILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 94 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 95 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTKPSARPTTT 154 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 155 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 209 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 210 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 269 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 270 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 329 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 330 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 384 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 385 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 444 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 445 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 499 >gi|160885204|ref|ZP_02066207.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483] gi|237714833|ref|ZP_04545314.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1] gi|237720012|ref|ZP_04550493.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 2_2_4] gi|262406895|ref|ZP_06083444.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_22] gi|293368855|ref|ZP_06615459.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CMC 3f] gi|294643068|ref|ZP_06720907.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CC 2a] gi|294807803|ref|ZP_06766593.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens SD CC 1b] gi|298479865|ref|ZP_06998065.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22] gi|299147890|ref|ZP_07040953.1| ATPase involved in DNA replication initiation [Bacteroides sp. 3_1_23] gi|156109554|gb|EDO11299.1| hypothetical protein BACOVA_03202 [Bacteroides ovatus ATCC 8483] gi|229445158|gb|EEO50949.1| chromosomal replication initiator protein dnaA [Bacteroides sp. D1] gi|229450564|gb|EEO56355.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 2_2_4] gi|262355598|gb|EEZ04689.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_22] gi|292636160|gb|EFF54648.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CMC 3f] gi|292641587|gb|EFF59766.1| chromosomal replication initiator protein DnaA [Bacteroides ovatus SD CC 2a] gi|294445000|gb|EFG13677.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens SD CC 1b] gi|295084766|emb|CBK66289.1| chromosomal replication initiator protein DnaA [Bacteroides xylanisolvens XB1A] gi|298274255|gb|EFI15816.1| ATPase involved in DNA replication initiation [Bacteroides sp. D22] gi|298514073|gb|EFI37959.1| ATPase involved in DNA replication initiation [Bacteroides sp. 3_1_23] Length = 470 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 132/479 (27%), Positives = 242/479 (50%), Gaps = 17/479 (3%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E N ++ +K+ V Y +WF + + L +P+ F ++ R+ Sbjct: 1 MIESNHVVLWNRCLDVIKDNVPETTYNTWFAPIVPLKYEDKTLILQIPSQFFYEILEERF 60 Query: 90 LETITKLFQEEHSR----IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 ++ I K + + V + S+ +V AS+ S +K+P L Sbjct: 61 VDLIRKTLYKVIGEGTKLMYNVMVDKTSIPNQTVNLEASNRSTAVTPKSIIGGNKAPSFL 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + L+ + F FIEG SN+++ + A+++A+ NPLF++ + Sbjct: 121 QAPAVQ-DLDPHLNPNYNFENFIEGYSNKLSRSVAEAVAQKPG----GTAFNPLFLYGAS 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID+L+I Sbjct: 176 GVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLII 235 Query: 266 DDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L Sbjct: 236 DDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAEL 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS- 383 E+R +IL+N + L EV+ ++A V S R+L+G ++ R + Sbjct: 296 EKPTVELRKNILRN-----KIHRDGLQFPPEVIDYIAENVNESVRDLEGIVIAIMARSTI 350 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 F + ++A ++ +V+ ETK + I+DI ++V KH+++ + + + R R VV+ RQ Sbjct: 351 FNKEIDLDLAQHIVHGVVHN-ETKAVTIDDILKVVCKHFDLEPSAIHTKSRKREVVQARQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + EV+ ++ L+ + Sbjct: 410 IAMYLAKNHTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFSAEVQEIESLLKK 468 >gi|300780158|ref|ZP_07090014.1| DNA-directed DNA replication initiator protein [Corynebacterium genitalium ATCC 33030] gi|300534268|gb|EFK55327.1| DNA-directed DNA replication initiator protein [Corynebacterium genitalium ATCC 33030] Length = 533 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 139/533 (26%), Positives = 247/533 (46%), Gaps = 73/533 (13%) Query: 32 EVNCESIFTIVSSRL-----KNQVGPDVYA----SWFQRLKFHSVLHNIVHLSVPTNFLK 82 + ++++ V + L + + ++ + ++ ++ LSVP + K Sbjct: 5 QQALDALWQDVVTELLNLSERPNSPVPTFTPGDRAYLRLVRPVMLVEGYCILSVPHSAAK 64 Query: 83 AWIKNRYLETITKLFQEEHSRIQGVEILVR------------------------------ 112 ++N+ I ++ +R + + V Sbjct: 65 NVVENQLGPYIVEILTHHLNRPCNIAVSVDAAAPEPAPEPEPPVQHTAPNPTPWFPTYSE 124 Query: 113 ----------------------SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + E+ A S + + I K Sbjct: 125 QARQFPAPIAGEQLPMGLDELARIHAQQQEQHAIEESARQQAAHPVVEVPQRIQREKPAH 184 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P + L+ ++ F F+ GSSNR A AA ++AE + Y NPLFI GLGKT Sbjct: 185 DPNRETSLNPKYTFENFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKT 239 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL A N S QP+LR+ Y+++E F + +++RD+ + K R++D+L++DD+QF Sbjct: 240 HLLHAAGNYSRVLQPDLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRDLDILMVDDIQF 299 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+GK Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D Sbjct: 300 LEGKEGTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDVQPPDL 359 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL + A + +++EVL +A +S REL+GA ++ S + Sbjct: 360 ETRIAILMKKAAADGTQ-----VDDEVLELIASKFESSIRELEGALIRVSAYSSLIKEPI 414 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T ++A L ++ K+ I+ + A+++ +S + L + RTV RQ+AMYL Sbjct: 415 TLDVAQIALRDILPDEGDIKITATTIKEVAAEYFRVSLDKLTGAGKTRTVAHARQLAMYL 474 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IG+ FG +DHTTV++A RK+ K + + E++ L ++I Sbjct: 475 CRELTDLSLPKIGQEFGGKDHTTVMYADRKIRKEMTENRETYDEIQELTQIIK 527 >gi|228471635|ref|ZP_04056409.1| chromosomal replication initiator protein DnaA [Capnocytophaga gingivalis ATCC 33624] gi|228277054|gb|EEK15740.1| chromosomal replication initiator protein DnaA [Capnocytophaga gingivalis ATCC 33624] Length = 478 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 142/486 (29%), Positives = 244/486 (50%), Gaps = 25/486 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV-LHNIVHLSVPTNFLKAWIKNRY 89 + + +I+ S +K+ V DVY WF+ ++ + N + + VP+ F WI++ Y Sbjct: 1 MNTDVRNIWENCLSFIKDNVTTDVYDVWFKPIEPVELTSDNTLVIMVPSMFFMEWIEDHY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + I +E + ++ P+ + A+ + + +Q+ Sbjct: 61 INLIWSALTKELGARPKLIYNIKMENNPNKTEQATEQLPSSNRKATSMEVLGYKQKPQQS 120 Query: 150 ISP------------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 +P S L+ F TFIEG SNR+A +A ++I E N Sbjct: 121 YNPYVVPGLVEIEEVKVDSQLNPNKNFDTFIEGESNRLARSAGKAITERPG----GTSFN 176 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFI VGLGKTHL AI N ++ P R++Y+ AE F +++ A ++N + Sbjct: 177 PLFIFGGVGLGKTHLAHAIGNEIQEKHPKKRILYIEAEDFTKQYSVAAKNNNRTDFIHFY 236 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 + ID+L+ID++QF K Q F + N L + KQ++ +D+ P +++ ++ R+ SR Sbjct: 237 QQIDVLIIDNVQFFASKPGTQDVFFQIFNHLHQNGKQLILTSDKAPVDIQDVEQRLLSRF 296 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+S L DY+MR IL+ L E ++EE++ ++A+ V T+ REL+G Sbjct: 297 KWGLSAELQAPDYQMRKRILQAILYRDGVE-----MSEEIVDYIAQNVKTNIRELEGVNT 351 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 L+ F +T ++A + + +V K++ +E IQ +V++++ +S +L S R Sbjct: 352 SLMAEALFNKKEITLDLAKKAVDKIVKN-IKKEITVEYIQEIVSEYFQLSIEELQSKTRK 410 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R VV+ RQ+AM+ +K T S IG+ G RDH TVLHA + V+ + ETD +K + Sbjct: 411 RHVVQARQLAMFFAKKYTKLSLANIGKSIGKRDHATVLHACKTVDNLNETDKQFRKFLSD 470 Query: 496 LKRLIS 501 L I+ Sbjct: 471 LTTKIN 476 >gi|167957210|ref|ZP_02544284.1| chromosomal replication initiator protein DnaA [candidate division TM7 single-cell isolate TM7c] Length = 451 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 137/470 (29%), Positives = 245/470 (52%), Gaps = 24/470 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +++ V ++ V + +WF+ K + + + P F + ++ R+ Sbjct: 1 MDSHAVWQGVLGEIEVTVSSSSFTAWFKNTKLEIISDKEISIIAPNIFARTQLEKRFHPQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK-LSPINTNISKSPIILGKQTIS 151 I + + V E + P I + ++ + S +P+IL + Sbjct: 61 ILEALSHNGISSPSISYHV--------ESSNKKPRINRDITKTERSGSSAPLILPSKK-- 110 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 S L+ R+ F FI GSSN +A A Q++A Y NPL+++ GLGKTH Sbjct: 111 -SHTSNLNPRYTFDNFIVGSSNDLAYAACQAVASHPGEKY-----NPLYLYGGSGLGKTH 164 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QA+ N IK+QP+ RV+Y+T E F+ F +IR D RN+D+L++DDMQF+ Sbjct: 165 LMQAVGNEIIKKQPSARVLYITTETFVNEFLDSIRFKKKG-FSDKYRNVDVLIVDDMQFI 223 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N L + KQ++ ++D+PP + +L R+RSR + G+++ + + DYE Sbjct: 224 AGKEKTQDEFFHTFNDLHQNNKQIIISSDKPPKSIPTLTDRLRSRFEWGMAIDIQMPDYE 283 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 R +I+K + IS E ++ +V+ ++A T+ REL+GA N+L+ Sbjct: 284 TRCAIVKAKAEISNTE-----LDSDVVEYLATNFKTNIRELEGALNRLLAYAEMQNFTPD 338 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E + + + + + I A++YNI D+ S+RR + + PRQ+AM+L + Sbjct: 339 LMAAEGILGDIKRSRPQHVTAKQIIDKTARYYNIDVKDMCSSRRDKFIATPRQIAMFLLR 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SFP+I + G +DHTT +H++ K+ K T++++++++ +K + Sbjct: 399 SELKMSFPKIAQELGRKDHTTAMHSIEKITKESLTNVSIREQINDIKDKL 448 >gi|167470924|ref|ZP_02335628.1| chromosomal replication initiator protein DnaA [Yersinia pestis FV-1] Length = 355 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 130/358 (36%), Positives = 207/358 (57%), Gaps = 13/358 (3%) Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + S ++ + F F+EG SN++A AA+ +A+ Y NPLF++ Sbjct: 8 SPAQPELSYRSNVNPKHTFDNFVEGKSNQLARAAARQVADNPGGAY-----NPLFLYGGT 62 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A+ N + R+ N +VVY+ +E F+ A+++N K R++D LLI Sbjct: 63 GLGKTHLLHAVGNGIMARKANAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLI 122 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + Sbjct: 123 DDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWGLTVAI 182 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 + E R +IL + + ++ + + EV +A+ + ++ REL+GA N+++ +F Sbjct: 183 EPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANF 237 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V RPRQ Sbjct: 238 TGRAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSVARPRQ 296 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E +K++ L R +S Sbjct: 297 MAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTLS 354 >gi|120401029|ref|YP_950858.1| chromosomal replication initiation protein [Mycobacterium vanbaalenii PYR-1] gi|166214685|sp|A1T102|DNAA_MYCVP RecName: Full=Chromosomal replication initiator protein DnaA gi|119953847|gb|ABM10852.1| chromosomal replication initiator protein DnaA [Mycobacterium vanbaalenii PYR-1] Length = 494 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 143/494 (28%), Positives = 242/494 (48%), Gaps = 42/494 (8%) Query: 37 SIFTIVSSRLKN-------QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 SI+ V + L + P +W + +K + LSVPT F++ I+ Sbjct: 11 SIWDNVVTELNGAGEVGNGSLTPQQ-RAWLKLVKPLVITEGFALLSVPTPFVQNEIERHL 69 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT-------------------K 130 E I + + VE+ VR S E + S + + Sbjct: 70 REPIVAALSRQLGQ--RVELGVRIADPVSDESDSGSVASPAPVAAADPDDDVVDDDLAAR 127 Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 S + S + L+ R+ F TF+ G+SNR A A+ +IAE + Sbjct: 128 ASAEESWPSYFTNRANRAAEDDATSVNLNRRYTFDTFVIGASNRFAHAASLAIAEAPARA 187 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 Y NPLFI GLGKTHLL A N + + P +RV Y++ E F F +++RD+ Sbjct: 188 Y-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRR 242 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + K + R+ID+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ Sbjct: 243 ASFKRTYRDIDVLLVDDIQFIEGKDGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLE 302 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+R+R + G+ + + E R +IL+ + + +L++ +VL +A + + R Sbjct: 303 DRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMDRLDVPGDVLELIASRIERNIR 357 Query: 370 ELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA ++ S + +A+ +L L++ T ++ I A+++ S + Sbjct: 358 ELEGALIRVTAFASLNKTPIDKSLAEIVLRDLISDSSTMQISTAAIMAATAEYFETSVEE 417 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A +K+ + Sbjct: 418 LRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAEKKIRAEMAERRE 476 Query: 489 LKKEVELLKRLISE 502 + V+ L I + Sbjct: 477 VFDHVKELTTRIRQ 490 >gi|260174144|ref|ZP_05760556.1| chromosomal replication initiation protein [Bacteroides sp. D2] gi|315922409|ref|ZP_07918649.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696284|gb|EFS33119.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 470 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 132/479 (27%), Positives = 242/479 (50%), Gaps = 17/479 (3%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E N ++ +K+ V Y +WF + + L +P+ F ++ R+ Sbjct: 1 MIESNHVVLWNRCLDVIKDNVPETTYNTWFAPIVPLKYEDKTLILQIPSQFFYEILEERF 60 Query: 90 LETITKLFQEEHSR----IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 ++ I K + + V + S+ +V AS+ S +K+P L Sbjct: 61 VDLIRKTLYKVIGEGTKLMYNVMVDKTSIPNQTVNLEASNRSTAVTPKSIIGGNKAPSFL 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + L+ + F FIEG SN+++ + A+++A+ NPLF++ + Sbjct: 121 QAPAVQ-DLDPHLNPNYNFENFIEGYSNKLSRSVAEAVAQKPG----GTAFNPLFLYGAS 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G+GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID+L+I Sbjct: 176 GVGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLII 235 Query: 266 DDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L Sbjct: 236 DDIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAEL 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS- 383 E+R +IL+N + L EV+ ++A V S R+L+G ++ R + Sbjct: 296 EKPTVELRKNILRN-----KIHRDGLQFPAEVIDYIAENVNESVRDLEGIVIAIMARSTI 350 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 F + ++A ++ +V+ ETK + I+DI ++V KH+++ + + + R R VV+ RQ Sbjct: 351 FNKEIDLDLAQHIVHGVVHN-ETKAVTIDDILKVVCKHFDLEPSAIHTKSRKREVVQARQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + EV+ ++ L+ + Sbjct: 410 IAMYLAKNHTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFNAEVQEIESLLKK 468 >gi|148283998|ref|YP_001248088.1| chromosomal replication initiation protein [Orientia tsutsugamushi str. Boryong] gi|146739437|emb|CAM79067.1| chromosomal replication initiator protein [Orientia tsutsugamushi str. Boryong] Length = 469 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 162/472 (34%), Positives = 270/472 (57%), Gaps = 19/472 (4%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+ +++ V L++ G V+ SWF ++ + + LS PTNF + WIK Y + Sbjct: 14 ELYFHELWSSVKRDLRHHYGEAVFKSWFSKMNMVDFTDSYIKLSAPTNFTRDWIKANYFD 73 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 +I +L S I V+I+ ++ S S + + K + + Sbjct: 74 SIRQLLAYYDSSITRVDIVTSAI--------DHQNSDLAFSTQQNTDNNNQQYSTKSSNN 125 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 +F S LD RF F F+ G N +A AA ++AE + + NPLF++ VGLGKTH Sbjct: 126 VIFSSTLDPRFTFDNFVVGRPNELAYAAATTVAESPT---AVAKSNPLFLYGGVGLGKTH 182 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ AIA +V+Y++AE FM++F ++R+ ++ K+ R++D+L+IDD+QF+ Sbjct: 183 LMHAIAWHIQNSSSKRKVIYMSAEKFMYQFVQSLRNKDVMSFKEQFRSVDVLMIDDIQFI 242 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE Sbjct: 243 CGKDSTQEEFFHTFNALIDNKRQMVISCDRSPSDLDNIEERIKSRLGWGLVADVHSTTYE 302 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 +R IL+ S+ E + +VL +A +T++ REL+GA N+++ + +T Sbjct: 303 LRLGILQ-----SKVEQLATAVPLKVLEFLAAKITSNVRELEGALNKVIAHSTLVGYEIT 357 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E E+L L+ + + K + I+ IQ+ VA+ YNI +D+ S+RR R+V RPRQ+AMYL+ Sbjct: 358 IENTQEILRDLLRSNQ-KTITIDSIQKKVAERYNIKISDMSSSRRSRSVTRPRQLAMYLA 416 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T +S +IG+ FG +DHTTV+HA++ VE + + + + EV LL R++ Sbjct: 417 KRLTSKSLVDIGKAFGKKDHTTVMHAIKTVEDLSKQEQEFEDEVRLLMRILQ 468 >gi|257485599|ref|ZP_05639640.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 DEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|33861122|ref|NP_892683.1| chromosomal replication initiation protein [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|61222626|sp|P0A3A2|DNAA_PROMP RecName: Full=Chromosomal replication initiator protein DnaA gi|61222628|sp|P0A3A3|DNAA_PROS9 RecName: Full=Chromosomal replication initiator protein DnaA gi|5616249|gb|AAD45692.1|AF158628_2 DnaA [Prochlorococcus marinus subsp. pastoris str. PCC 9511] gi|33639854|emb|CAE19024.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 463 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 143/467 (30%), Positives = 248/467 (53%), Gaps = 20/467 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P NF W++ Y ETI K Sbjct: 7 IWAEVQQLLQKNLSKPSFETWIRPAKFNCFENGLLTLITPNNFTSDWLRKNYSETIEKAA 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +E I G + V + ++ ++S IN+ I I+ S Sbjct: 67 EE----ICGHNVKVVFKSETNINNNSNSSDSVSQQNINSQSKSFSINQSNNLINRSKKSH 122 Query: 158 -LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L++R+VF F+ G ++R+A AA ++AE NPLFI VGLGKTHL+QA+ Sbjct: 123 SLNTRYVFKRFVVGPNSRMAHAAALAVAESPGR-----EFNPLFICGGVGLGKTHLMQAV 177 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + ++ P+ +V+Y++ E F +IR + K+ R++DLLLIDD+QFL+GK Sbjct: 178 GHYRVEIDPDAKVLYVSTETFSSDLIQSIRKDGMHAFKNKYRSVDLLLIDDIQFLEGKEY 237 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF + N+L ++ KQ+V A+DRPPS++ L R+ SR G+ + D E R +I Sbjct: 238 TQEEFFNTFNALYEAGKQIVIASDRPPSQIPKLQERLISRFSMGLIADIQPPDIETRMAI 297 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ + E ++N+ +++ +A +++ REL+GAF + V FA I + + Sbjct: 298 LQK-----KAEQERMNLPRDLIQFIAGRFSSNIRELEGAFTRAVA---FASITGLPMTVQ 349 Query: 396 LLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++ ++ + + + + V+ + +S +L+S+ R + V + RQ+ MYL + T Sbjct: 350 SIAPMLDPNSVGVVVTPKQVIKKVSDFFEVSAEELVSSSRRKPVSQARQIGMYLMRQGTD 409 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P+IG FG +DHTTV++A+ +VEK L +D + +V+ +K L+ Sbjct: 410 LSLPKIGDEFGGKDHTTVMYAIEQVEKKLSSDPNVASQVQKIKDLLQ 456 >gi|108796982|ref|YP_637179.1| chromosomal replication initiation protein [Mycobacterium sp. MCS] gi|119866066|ref|YP_936018.1| chromosomal replication initiation protein [Mycobacterium sp. KMS] gi|126432614|ref|YP_001068305.1| chromosomal replication initiation protein [Mycobacterium sp. JLS] gi|123179824|sp|Q1BG61|DNAA_MYCSS RecName: Full=Chromosomal replication initiator protein DnaA gi|166214681|sp|A3PSD7|DNAA_MYCSJ RecName: Full=Chromosomal replication initiator protein DnaA gi|166214682|sp|A1U8S0|DNAA_MYCSK RecName: Full=Chromosomal replication initiator protein DnaA gi|108767401|gb|ABG06123.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. MCS] gi|119692155|gb|ABL89228.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. KMS] gi|126232414|gb|ABN95814.1| chromosomal replication initiator protein DnaA [Mycobacterium sp. JLS] Length = 495 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 140/495 (28%), Positives = 245/495 (49%), Gaps = 43/495 (8%) Query: 37 SIFTIVSSRLKN---------------QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL 81 +++ V + L + P +W + +K + LSVPT F+ Sbjct: 11 AVWNTVVAELNGDPAATGPRNGDGALPTLTPQQ-RAWLKLVKPLVITEGFALLSVPTPFV 69 Query: 82 KAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKT-------ASSPSITKLSPI 134 + I+ E I + VE+ VR + A + + + Sbjct: 70 QNEIERHLREPIITALSRHLGQ--RVELGVRIATPSPEDDDPPPSPVIADIDEVDEDTEA 127 Query: 135 NTNISKS-PIILGKQTISPVFGSP----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 + ++ P + +P P L+ R+ F TF+ G+SNR A A +IAE + Sbjct: 128 RVSAEETWPRYFSRPPETPAAEDPNAVSLNRRYTFDTFVIGASNRFAHAATLAIAEAPAR 187 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLFI GLGKTHLL A N + + P +RV Y++ E F F +++RD+ Sbjct: 188 AY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDR 242 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K S R+ID+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L Sbjct: 243 KASFKRSYRDIDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATL 302 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+R+R + G+ + + E R +IL+ + + +L++ ++VL +A ++ + Sbjct: 303 EDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMDRLDVPDDVLELIASSIERNI 357 Query: 369 RELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA ++ S + +A+ +L L++ T ++ I A+++ + Sbjct: 358 RELEGALIRVTAFASLNKTPIDKSLAEIVLRDLISDASTMQISTAAIMAATAEYFETTIE 417 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A +K+ + Sbjct: 418 ELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAEKKIRGEMAERR 476 Query: 488 TLKKEVELLKRLISE 502 + V+ L I + Sbjct: 477 EVFDHVKELTTRIRQ 491 >gi|229824635|ref|ZP_04450704.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271] gi|229786006|gb|EEP22120.1| hypothetical protein GCWU000282_01982 [Catonella morbi ATCC 51271] Length = 461 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 139/480 (28%), Positives = 237/480 (49%), Gaps = 30/480 (6%) Query: 29 RCLEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 +E E + + +++ + + ++ + N L VP + ++ + + Sbjct: 6 PSME-EKELFWQELLEYIRHYGGLDEKTFEAFVSSADIMELTENSFKLRVPNSLIRNFWE 64 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 + + + G + + V PS ++ + + T + SP+ + Sbjct: 65 Q---GKLKNVVVDFSLSTFGRQYQAKYVVSPSKQQINT-------QVVQTPVHISPLEME 114 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 S S L+ + FS F+ G +N++A AA ++ + Y NP I+ VG Sbjct: 115 PNEPSSYSRSQLNPNYTFSNFVIGEANKMAHAAALTVCDAPGETY-----NPYLIYGGVG 169 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QAI N + RQP+ ++ Y T E F F +A+ N + R ID+LLID Sbjct: 170 LGKTHLMQAIGNEILSRQPHAKIKYATTESFTNDFITALEKNTIEEFRHMYRKIDVLLID 229 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL K + EF H N L + KQ+V DR PS L L+ R+ SR G+ + + Sbjct: 230 DIQFLSNKNKTREEFFHTFNELYNHGKQIVMTCDRLPSSLSGLEDRLISRFAWGLQIDIT 289 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 D+E R +IL+ + + + + L ++A V T+ REL+GA ++ + Sbjct: 290 PPDFETRIAILRKKASNE--------FSADTLQYIASHVNTNIRELEGALTRVTAYATIH 341 Query: 385 APILTAEIADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T +A E LS L+N K+ I++I V ++YN+ ++L +R + +V PR Sbjct: 342 NREITTNLAAEALSSLLNGTPTTGDKLSIDEIVTQVGRYYNVEIDELKGKKRTKEIVHPR 401 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 QVAMYL + +T SFP+IG FG R+HTT++HA K+ L+ + LK+E+ LK+ + + Sbjct: 402 QVAMYLCRELTDVSFPKIGEAFGKRNHTTIIHAYEKINDELQHNARLKQELSELKQKLGQ 461 >gi|330976402|gb|EGH76459.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 222/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 + PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 NEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|330937300|gb|EGH41308.1| chromosomal replication initiation protein [Pseudomonas syringae pv. pisi str. 1704B] Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 222/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 + PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 NEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|330987019|gb|EGH85122.1| chromosomal replication initiation protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 DEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|302185840|ref|ZP_07262513.1| chromosomal replication initiation protein [Pseudomonas syringae pv. syringae 642] Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 DEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|298484609|ref|ZP_07002714.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160866|gb|EFI01882.1| Chromosomal replication initiator protein dnaA [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 DEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|71737409|ref|YP_272316.1| chromosomal replication initiation protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|123734066|sp|Q48QK0|DNAA_PSE14 RecName: Full=Chromosomal replication initiator protein DnaA gi|71557962|gb|AAZ37173.1| chromosomal replication initiator protein DnaA [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321688|gb|EFW77787.1| chromosomal replication initiation protein [Pseudomonas syringae pv. glycinea str. B076] Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 DEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|330964181|gb|EGH64441.1| chromosomal replication initiation protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 222/388 (57%), Gaps = 18/388 (4%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRV 175 T PS P+ S+ +Q V G S L+ F F F+EG SN++ Sbjct: 134 ATHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQL 193 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 194 ARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSE 248 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV Sbjct: 249 RFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQV 308 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ Sbjct: 309 ILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPH 363 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 + +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++ Sbjct: 364 DAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDN 422 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVL Sbjct: 423 IQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVL 482 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ E+D ++++ + L R ++ Sbjct: 483 HACRKINELKESDADIREDYKNLLRTLT 510 >gi|33863457|ref|NP_895017.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9313] gi|61212718|sp|Q7V6H4|DNAA_PROMM RecName: Full=Chromosomal replication initiator protein DnaA gi|33640906|emb|CAE21362.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9313] Length = 465 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 132/473 (27%), Positives = 238/473 (50%), Gaps = 17/473 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +++ V L++ + + +W + + L P +F W++ Y+ Sbjct: 1 MVITGNELWSKVQQALQHNLSKPTFETWIRPAICSGFRDGELTLIAPNSFASNWLRKNYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +TI + + + V + V++ S E+ + + + + + Sbjct: 61 QTIEAAAAKIYGQ--SVRVSVQAQEEDSAERVLPPMTSASIPSPLPTAETTTASVAPSSG 118 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGKT Sbjct: 119 PRRILPGLNLRYVFNRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLGKT 173 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P +V Y++ E F AIR + +D R DL+L+DD+QF Sbjct: 174 HLMQAIGHYRLEINPEAKVAYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLILVDDIQF 233 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D Sbjct: 234 IEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPKLQERLISRFSMGLIADIQSPDL 293 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E ++ + +++ ++A T++ REL+GA + V FA I Sbjct: 294 ETRMAILQK-----KAEQERMMLPRDLIQYIAGRFTSNIRELEGALTRAVA---FASITG 345 Query: 390 AEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++ G+ + + + V++ ++++ D+ S+ R R V RQV MYL Sbjct: 346 LPMTVESVAPMLDPNGQGVDVTPQQVIDKVSEVFDVTPQDMRSSSRRRAVSHARQVGMYL 405 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV++A+ +VEK L +D L +V ++ L+ Sbjct: 406 MRQGTDLSLPRIGETFGGKDHTTVMYAIEQVEKRLSSDPQLASQVRRVRDLLQ 458 >gi|289628214|ref|ZP_06461168.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649104|ref|ZP_06480447.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330870075|gb|EGH04784.1| chromosomal replication initiation protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 DEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|149372330|ref|ZP_01891518.1| chromosomal replication initiator protein [unidentified eubacterium SCB49] gi|149354720|gb|EDM43283.1| chromosomal replication initiator protein [unidentified eubacterium SCB49] Length = 476 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 128/485 (26%), Positives = 244/485 (50%), Gaps = 24/485 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ES++T S +++ + + +WF+ + + N + + VP+ F +++ Y+ Sbjct: 1 MSRTAESVWTNCLSFIEDNITSQAFKTWFEPIIAVKLTDNALSIQVPSKFFYEFLEEHYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEK--TASSPSITKLSPINTNISKSPIILGKQ 148 + + E + ++ ++ T PS + + + P+ Sbjct: 61 KLLKVALTRELGANAKLVYNIKMENTYGNKQPFTEKIPSTNRSNYQGSQNVDVPLKNKSP 120 Query: 149 TISPVF----------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + F S L+ + F F+EG SNR+A +A ++A NP Sbjct: 121 ELKNPFVIPGIRNVKIESQLNPNYNFENFLEGESNRLARSAGIAVANKPG----GTSFNP 176 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L + SVGLGKTHL AI + P V+Y++AE F+ +++ +++ N + + Sbjct: 177 LLVFGSVGLGKTHLAHAIGVDIKDKYPEKTVLYISAEKFVQQYSESVKKNNRNDFIHFYQ 236 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ID+L++DD+Q L GK Q F H+ N L + KQV+ +D+ P ++ ++ R+ SR + Sbjct: 237 IIDVLIVDDIQLLSGKAGTQDVFFHIFNHLHQNGKQVILTSDKAPVDMIDIEQRLLSRFK 296 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+S L DY+ R +I++N+L E + ++++ +A + T+ REL+GA Sbjct: 297 WGLSAELNHPDYDTRVAIIQNKLYRDGVE-----MPDDIVEFLANNIKTNIRELEGAIIS 351 Query: 378 LVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+ SF +T ++A +++ + V +++ I+ IQ++V+ ++ + + L S R R Sbjct: 352 LIAHSSFNKKEITIDLAKKIVDNYVK-HTKREVSIDYIQKVVSDYFQMDVDTLQSKTRKR 410 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 +V+ RQ+AM+ +K T S IG + G RDH TVLHA + V+ + TD +K V+ L Sbjct: 411 HIVQARQLAMFFAKKFTKASLASIGSQIGQRDHATVLHACKTVDNLASTDKQFRKYVDDL 470 Query: 497 KRLIS 501 ++ ++ Sbjct: 471 QKKLT 475 >gi|226225407|ref|YP_002759513.1| chromosomal replication initiator protein DnaA [Gemmatimonas aurantiaca T-27] gi|226088598|dbj|BAH37043.1| chromosomal replication initiator protein DnaA [Gemmatimonas aurantiaca T-27] Length = 472 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 137/480 (28%), Positives = 238/480 (49%), Gaps = 29/480 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + ++ I+ + R + + Y +W + + + N + + F W ++++ Sbjct: 1 MSLSPAEIWDRLRQRARQVLPEQAYRAWLEPTEAIGLDDNTLLVGASDQFTADWNESKHA 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + V L V+ ++P +S +PI+ Sbjct: 61 DLLATFAPVALGHPIKIRFKVHQERLGRVQMD------MFVAPPPVAVSTAPIVQ----- 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P +PL+ R+ F F+ G SN VA AAQ+ A+ Y NPLFI+ GLGKT Sbjct: 110 QPRISTPLNPRYTFDQFVIGKSNDVAAAAAQAAAQAPGKVY-----NPLFIYGETGLGKT 164 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+Q IA+ ++R P LR+ Y+ E F F AI+ + + R IDLLL+DD+QF Sbjct: 165 HLMQGIAHELLRRTPTLRLAYVGTEQFTNEFIGAIQAGAMGDFRRRFREIDLLLVDDVQF 224 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L+GK Q EF H N++ ++ +Q+V +DRPP E+ L+ R+ SR + G+ + D Sbjct: 225 LKGKESTQEEFFHTFNAIYEAGRQIVLTSDRPPKEIPGLESRLVSRFEWGMVANIDSPDL 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PIL 388 E R +ILK + ++ E L I +EV+ +A+ V +S REL+G+ +L+ S + Sbjct: 285 EHRIAILKKKASLDHLE---LTIPDEVIEFIAQHVKSSVRELEGSIIKLLAYASLKHRDI 341 Query: 389 TAEIADELLSHLVNTG--------ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + ++A E L + G + + IQ++VA+ + ++ + L S R + + Sbjct: 342 SVDLAREALRDKLRAGSSSDFPDVPPTTITVATIQQVVAREWGVTPDGLRSKTRTKQLTV 401 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMYL + + EIG FG RDH+TV+H++ +V + D + V ++ ++ Sbjct: 402 PRQIAMYLCRELLALQLVEIGNAFGGRDHSTVIHSLDRVADEMNGDPAFTERVLKIRGML 461 >gi|189184480|ref|YP_001938265.1| chromosomal replication initiation protein [Orientia tsutsugamushi str. Ikeda] gi|189181251|dbj|BAG41031.1| chromosomal replication initiator protein DnaA [Orientia tsutsugamushi str. Ikeda] Length = 470 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 160/468 (34%), Positives = 272/468 (58%), Gaps = 18/468 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ V L++ G V+ SWF ++ + LS PTNF + WIK Y ++I + Sbjct: 18 HELWSNVKRDLRHHYGEAVFKSWFSKMNMVDFTDGYIKLSAPTNFTRDWIKANYFDSIRQ 77 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L S I ++I+ ++ + + + + NT+ + + K + + +F Sbjct: 78 LLAYYDSSITSIDIVTSAIDHQNSD-------LAFSTQQNTDNNNNQQYSTKSSNNVIFS 130 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S LD RF F F+ G N +A AA ++AE + + NPLF++ VGLGKTHL+ A Sbjct: 131 STLDPRFTFDNFVVGRPNELAYAAATTVAESPT---AVAKSNPLFLYGGVGLGKTHLMHA 187 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IA +V+Y++AE FM++F ++R+ ++ K+ R++D+L+IDD+QF+ GK Sbjct: 188 IAWHIQNSSSKRKVIYMSAEKFMYQFVQSLRNKDVMSFKEQFRSVDVLMIDDIQFICGKD 247 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L+D+ +Q+V + DR PS+L++++ RI+SRL G+ + YE+R Sbjct: 248 STQEEFFHTFNALIDNKRQMVISCDRSPSDLDNIEERIKSRLGWGLVADVHSTTYELRLG 307 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+ S+ E + +VL +A +T++ REL+GA N+++ + +T E Sbjct: 308 ILQ-----SKVEQLATAVPLKVLEFLAAKITSNVRELEGALNKVIAHSTLVGYEITIENT 362 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E+L L+ + + K + I+ IQ+ VA+ YNI +D+ S+RR R+V RPRQ+AMYL+K +T Sbjct: 363 QEILRDLLRSNQ-KTITIDSIQKKVAERYNIKISDMSSSRRSRSVTRPRQLAMYLAKRLT 421 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +S +IG+ FG +DHTTV+HA++ VE + + + + EV LL R++ Sbjct: 422 SKSLVDIGKAFGKKDHTTVMHAIKTVEDLSKQEQEFEDEVRLLMRILQ 469 >gi|332139411|ref|YP_004425149.1| Chromosomal replication initiator protein dnaA [Alteromonas macleodii str. 'Deep ecotype'] gi|327549433|gb|AEA96151.1| Chromosomal replication initiator protein dnaA [Alteromonas macleodii str. 'Deep ecotype'] Length = 554 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 128/369 (34%), Positives = 211/369 (57%), Gaps = 13/369 (3%) Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 N S +P + + S ++ + F F+EG SN++A AA +A Y Sbjct: 196 QPNRSSAPPKVIPIPEAMKHKSNINPTYQFDNFVEGKSNQLARAAATQVANNPGGSY--- 252 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLFI+ GLGKTHLL A+ N + + ++VY+ +E F+ A+++N + K Sbjct: 253 --NPLFIYGGTGLGKTHLLHAVGNGIVANNGDAKIVYMHSERFVQDMVKALQNNAIEDFK 310 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E++ ++ R++ Sbjct: 311 RFYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIDGVEDRLK 370 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G+++ + + E R +IL + + + ++++ EV +A+ + ++ REL+G Sbjct: 371 SRFGWGLTIAIEPPELETRVAIL-----MRKAAENRIHLPNEVAFFIAKRLRSNVRELEG 425 Query: 374 AFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A N+++ +F +T + E L L+ K + +++IQ+ VA +Y I D+LS Sbjct: 426 ALNRVIANANFTGRPITIDFVREALRDLLALQ-EKLVTVDNIQKTVADYYKIKVADILSK 484 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR R+V RPRQVAM L+K +T S PE+G FG RDHTTVLHA RK+E++ E +K++ Sbjct: 485 RRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACRKIEQLREESHDIKED 544 Query: 493 VELLKRLIS 501 + L R +S Sbjct: 545 YKNLIRTLS 553 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 50/118 (42%), Gaps = 4/118 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L +V L P F+ W++++YL IT L Sbjct: 2 SLWNQCLERLRQELPTQQFSMWIRPLVCEE-QGGVVALYAPNRFVLDWVRDKYLNNITAL 60 Query: 97 FQEEHSRI---QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 +E +E++ R+ S ++S+ + + + N + + + + Sbjct: 61 LREFAGNDAPQLRLEVMSRNSVSRSQTVSSSASTPSNANSGVNNSHFNANVQSQDNSA 118 >gi|124022539|ref|YP_001016846.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9303] gi|166214690|sp|A2C7X1|DNAA_PROM3 RecName: Full=Chromosomal replication initiator protein DnaA gi|123962825|gb|ABM77581.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9303] Length = 463 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 237/473 (50%), Gaps = 19/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +++ V L++ + + +W + + L P +F W++ Y+ Sbjct: 1 MVLTGNELWSKVQQALQHNLSKPTFETWIRPAICSGFRDGELTLIAPNSFASNWLRKNYV 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 +TI + + + V + + + + L + + G + I Sbjct: 61 QTIEAAAAKIYGQPVRVSVQAQEEDSAERVLPPMASAPVPLPAAEATTASAAPSSGPRRI 120 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P L+ R+VF+ F+ G ++R+A AA ++AE NPLFI VGLGKT Sbjct: 121 LP----GLNLRYVFNRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P +V Y++ E F AIR + +D R DL+L+DD+QF Sbjct: 172 HLMQAIGHYRLEINPEAKVAYVSTETFTNDLIQAIRKDGMQAFRDRYRATDLILVDDIQF 231 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ +Q+V A+DRPPS++ L R+ SR G+ + D Sbjct: 232 IEGKEYTQEEFFHTFNALHEAGRQIVIASDRPPSQIPKLQERLISRFSMGLIADIQSPDL 291 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E ++ + +++ ++A T++ REL+GA + V FA I Sbjct: 292 ETRMAILQK-----KAEQERMMLPRDLIQYIAGRFTSNIRELEGALTRAVA---FASITG 343 Query: 390 AEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++ G+ + + + V++ ++++ D+ S+ R R V RQV MYL Sbjct: 344 LPMTVESVAPMLDPNGQGVDVTPQQVIDKVSEVFDVTPQDMRSSSRRRAVSHARQVGMYL 403 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV++A+ +VEK L +D L +V ++ L+ Sbjct: 404 MRQGTDLSLPRIGETFGGKDHTTVMYAIEQVEKRLSSDPQLASQVRRVRDLLQ 456 >gi|331011887|gb|EGH91943.1| chromosomal replication initiation protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 511 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 137 DEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 196 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 197 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 251 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 252 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 311 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 312 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 366 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 367 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 425 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 426 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 485 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 486 RKINELKESDADIREDYKNLLRTLT 510 >gi|327334557|gb|EGE76268.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL097PA1] Length = 474 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 139/475 (29%), Positives = 235/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T + ++ V +W ++ + ++VP F + ++++ + Sbjct: 14 LNEAWTNILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 68 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 69 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTEPSARPTTT 128 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 129 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 183 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 184 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 243 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 244 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 303 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 304 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 358 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +++V RQ+AMY Sbjct: 359 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISTDDLLGTSRAQSLVTARQIAMY 418 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 419 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 473 >gi|325969850|ref|YP_004246041.1| Chromosomal replication initiator protein dnaA [Spirochaeta sp. Buddy] gi|324025088|gb|ADY11847.1| Chromosomal replication initiator protein dnaA [Spirochaeta sp. Buddy] Length = 473 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 145/476 (30%), Positives = 247/476 (51%), Gaps = 15/476 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +SR+K+ + + +WF R+ + V L+ + F+ + RY Sbjct: 4 MHTTYYEFWQETASRIKDTLPEQEFNTWFNRIAYLKSEDKKVILAGASQFILDTVIARYR 63 Query: 91 ETITKLFQEEHSRIQGVEILVRSVA-LPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + I E VE V S + + + K + + P I ++T Sbjct: 64 DLIVNTLSELTGEDINVEFAVISRSEIEQINKPEGNAKEKEEKQEPVQTQAKPKISNEKT 123 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S L+ + F F+ G ++ A A+ +IA+ Y NP I+ VGLGK Sbjct: 124 LRMKVESNLNPSYDFGNFVIGDNSAFAYNASLAIAKNPGSSY-----NPCLIYGGVGLGK 178 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL +I N I P L+V+Y+TAE F F +I + K+ R +D+LLIDD+ Sbjct: 179 THLLNSIGNFIINNTPELKVMYVTAEMFTNEFIESIGSQKTQHFKNKFRKVDVLLIDDIH 238 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQGK Q E H N+L +S KQ+V DRP SEL+++ R+ SR + G++V L + Sbjct: 239 FLQGKDSTQEELFHTFNNLYESKKQMVFTCDRPISELKNITDRLSSRFERGLNVDLQPPN 298 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPI 387 YE R +ILK +L +++EE+L ++A V T+ R+L+ + +L+ + Sbjct: 299 YETRMAILKKKLIERGS-----SMSEEILNYIATNVCTNVRDLESSLTKLIAYSELLSQE 353 Query: 388 LTAEIADELLSHL--VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++ + A ELL L + + + I+ I ++V +++N+S ++ ++ +++++PRQ+A Sbjct: 354 ISFDKAKELLGILPSLAANANQTLSIDTIIKVVGEYFNVSSFEIKGKKKNKSLIQPRQIA 413 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYLS+ +T S EIG FG RDHTTV+HA ++E +++ D V+ LKR ++ Sbjct: 414 MYLSRDITEYSTTEIGTEFGGRDHTTVMHAYDRIESLMKGDEAFANTVQKLKRDLT 469 >gi|260584257|ref|ZP_05852004.1| DNA replication initiator protein, ATPase [Granulicatella elegans ATCC 700633] gi|260157775|gb|EEW92844.1| DNA replication initiator protein, ATPase [Granulicatella elegans ATCC 700633] Length = 455 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 139/468 (29%), Positives = 237/468 (50%), Gaps = 20/468 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + I+ + + W K + N +++ VP+ + ++ L + Sbjct: 4 LDEFWKILLAHFEKTNSDFTIKHWIMPAKLLKIDSNYLYIQVPSQTYANFWEDNLLTDVM 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + + + ++ S E+ SS S +++ I + I Sbjct: 64 ERGYDYFRKSFEPKFII------SDEQEFSSKQTFMESNPQLQVTEE-IKEVTKNIYLED 116 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ ++ F +FI G N++A AA + E Y NPLF + VGLGKTHL+Q Sbjct: 117 DSLLNPKYTFDSFIIGKGNQMAHAAALVVCERPGQLY-----NPLFFYGGVGLGKTHLMQ 171 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N PN RV Y+T+E F +++R N +D RN+DLLL+DD+QF K Sbjct: 172 AIGNQYKLLNPNARVKYVTSEAFTNEMITSLRTNTQQEFRDYYRNVDLLLVDDIQFFAEK 231 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V +DR P+E+++L R+ SR G+ V + D E R Sbjct: 232 EATQEEFFHTFNALFNNQKQIVLTSDRQPTEIKALQERLVSRFVSGLPVDITPPDLETRI 291 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEI 392 +IL + E ++I + L ++A + ++ REL+GA ++ + +T + Sbjct: 292 AILSK-----KAEAVGIDIPTDTLSYIAGQIQSNVRELEGALVRVQAYSVTHGEDITTNL 346 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E L + + + K + ++DIQ VA++Y+IS DL +R +++V PRQ+AMYL++ + Sbjct: 347 AAEALQNFIPGSKEKIVSVQDIQEAVARYYHISLEDLKGKKRTKSIVEPRQIAMYLAREL 406 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P++G FG +DH+TVLHA K+ + + + K V LK+ + Sbjct: 407 TNSSLPKLGTEFG-KDHSTVLHAYDKINEEYKLQGDITKAVNDLKKKL 453 >gi|331017725|gb|EGH97781.1| chromosomal replication initiation protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 395 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 222/388 (57%), Gaps = 18/388 (4%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRV 175 T PS P+ S+ +Q V G S L+ F F F+EG SN++ Sbjct: 18 ATHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQL 77 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 78 ARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSE 132 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV Sbjct: 133 RFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQV 192 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ Sbjct: 193 ILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPH 247 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 + +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++ Sbjct: 248 DAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDN 306 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVL Sbjct: 307 IQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVL 366 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ E+D ++++ + L R ++ Sbjct: 367 HACRKINELKESDADIREDYKNLLRTLT 394 >gi|320531085|ref|ZP_08032114.1| replication initiator protein DnaA [Selenomonas artemidis F0399] gi|320136667|gb|EFW28620.1| replication initiator protein DnaA [Selenomonas artemidis F0399] Length = 487 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 131/484 (27%), Positives = 229/484 (47%), Gaps = 30/484 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ + + + + W R+ + + + L+VP F K +I+ RYL ++ Sbjct: 11 ALWRQILEKTDGILPQEAVTKWLPRIVPITQNGSELVLAVPDAFTKQFIEQRYLVLLSDA 70 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSIT---------------KLSPINTNISKS 141 ++V P S + SP + + Sbjct: 71 AHAALDAAYTFRLVVDPSTAPKSPAPREHASSSLDGAGTTADEIASYGSSSPAQGALPLT 130 Query: 142 PIILG---KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 P + +P + L+ ++ F F+ G SN+ + A+S+AE NP Sbjct: 131 PPVPDAGTSHAAAPDDATTLNPKYTFDAFVTGRSNQFSYAMAKSVAEAPG----LPSNNP 186 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFI+ VGLGKTHL+ A+ + + P+ RV+Y+ + F F SAI ++ Sbjct: 187 LFIYGGVGLGKTHLMHAVGHKILADHPDKRVLYIASMDFTNEFISAIGKKNTDEFREKYY 246 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ID+LLIDD+QF G+ Q EF + N L DS +Q++ DR P E++ L+ R+ SR Sbjct: 247 AIDVLLIDDIQFFSGQLQTQAEFFQMFNKLRDSGRQIIMTCDRQPQEVKGLEDRLISRFS 306 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 GGV V + ++E R +IL+ + + +++I +V+ ++A V ++ REL+GA + Sbjct: 307 GGVVVDIQPPEFETRMAILQK-----KAQSEEIDIPGDVMTYIASRVDSNIRELEGALTR 361 Query: 378 LVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+ S + + L + + +++ +E I+ MV H+ I D+ S +R Sbjct: 362 LIKYASTMRLPIDESTCVAALGNYLRGETGRRITMEVIESMVCTHFKIKSEDIRSTKRSN 421 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 + PRQVAMYL +T S+P IG F +RDH+TV+HA +K++ ++ D ++ L Sbjct: 422 DIAFPRQVAMYLCHELTDVSWPTIGGFF-NRDHSTVIHAHKKIQSLVSEDAATDALIKSL 480 Query: 497 KRLI 500 I Sbjct: 481 TVQI 484 >gi|291547605|emb|CBL20713.1| chromosomal replication initiator protein DnaA [Ruminococcus sp. SR1/5] Length = 455 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 245/473 (51%), Gaps = 38/473 (8%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK---AWIKNRYLETI 93 + + +K++ V + +W + LK + V ++ + VP+ +I RY + Sbjct: 8 WEEILQTVKSEYEVTDVPFNTWLKPLKVYEVDGKLITVVVPSEQAAIGVNYISKRYKIPL 67 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E VR V + K + +T ++ Sbjct: 68 QVTICVLTGME---ECEVRFVLEKDLPKKTEKNTSYDKQVQDTRYEEA------------ 112 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ ++ F TF+ GS+N+ A AA ++AE Y NPLFI+ GLGKTHL+ Sbjct: 113 ---HLNPKYTFDTFVVGSNNKFAQAAALAVAESPGDTY-----NPLFIYGGAGLGKTHLM 164 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQF 270 +IA+ ++ N RV+Y+T+E F IR+ ++ RNID+LL+DD+QF Sbjct: 165 HSIAHFILEHDENSRVLYVTSEEFTNELIETIRNGNNTAMSKFREKYRNIDVLLVDDIQF 224 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q EF H NSL + KQ++ ++D+PP ++E L+ R RSR + G+ + L DY Sbjct: 225 IIGKESTQEEFFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDY 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL +E NI+E+V+ ++A + ++ REL+GAFN+++ + Sbjct: 285 ETRMAILHK-----NEEMNGYNISEDVIKYIATNIKSNIRELEGAFNKVMAGAKLEKKEV 339 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A++ L +++ E K + E I +VA+HY ++ DL N+R +V PRQV+MYL Sbjct: 340 TLELAEQALKDIISPDEKKVITPEYIISVVAEHYGVTPADLSGNKRNSKIVMPRQVSMYL 399 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + + IG+ G+RDHTTV+H + K+E L+ D LK +++LK+ I+ Sbjct: 400 CREIISTPLKNIGKALGNRDHTTVMHGIEKIENELQNDDNLKNTIDILKKKIN 452 >gi|313806856|gb|EFS45354.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA2] gi|313811769|gb|EFS49483.1| replication initiator protein DnaA [Propionibacterium acnes HL083PA1] gi|313824524|gb|EFS62238.1| replication initiator protein DnaA [Propionibacterium acnes HL036PA2] gi|313826193|gb|EFS63907.1| replication initiator protein DnaA [Propionibacterium acnes HL063PA1] gi|313829189|gb|EFS66903.1| replication initiator protein DnaA [Propionibacterium acnes HL063PA2] gi|313832303|gb|EFS70017.1| replication initiator protein DnaA [Propionibacterium acnes HL007PA1] gi|313832763|gb|EFS70477.1| replication initiator protein DnaA [Propionibacterium acnes HL056PA1] gi|313839622|gb|EFS77336.1| replication initiator protein DnaA [Propionibacterium acnes HL086PA1] gi|314975198|gb|EFT19293.1| replication initiator protein DnaA [Propionibacterium acnes HL053PA1] gi|314977611|gb|EFT21706.1| replication initiator protein DnaA [Propionibacterium acnes HL045PA1] gi|314990686|gb|EFT34777.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA3] gi|315078993|gb|EFT51005.1| replication initiator protein DnaA [Propionibacterium acnes HL053PA2] gi|315088015|gb|EFT59991.1| replication initiator protein DnaA [Propionibacterium acnes HL072PA1] gi|327332500|gb|EGE74235.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL096PA2] gi|327333673|gb|EGE75390.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL096PA3] gi|327448835|gb|EGE95489.1| replication initiator protein DnaA [Propionibacterium acnes HL043PA1] gi|328759811|gb|EGF73402.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL099PA1] Length = 474 Score = 429 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 235/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T + ++ V +W ++ + ++VP F + ++++ + Sbjct: 14 LNEAWTNILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 68 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 69 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTEPSARPTTT 128 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 129 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 183 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 184 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 243 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 244 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 303 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 304 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 358 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 359 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 418 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 419 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 473 >gi|225386353|ref|ZP_03756117.1| hypothetical protein CLOSTASPAR_00097 [Clostridium asparagiforme DSM 15981] gi|225047535|gb|EEG57781.1| hypothetical protein CLOSTASPAR_00097 [Clostridium asparagiforme DSM 15981] Length = 456 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 151/472 (31%), Positives = 253/472 (53%), Gaps = 35/472 (7%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + LK + + + +W LK +S +N V + VP A++K RY + Sbjct: 9 WEQILLNLKEEHEISDISFKTWLLPLKPYSFKNNTVTIIVPEQTFLAYVKRRYSLLMKVA 68 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP--VF 154 E +E + +L+ N + I ++SP + Sbjct: 69 ISEFLGVECEIEFKLE----------------DQLAEANLSTEPQLIEKNNTSVSPDVIQ 112 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ ++ F TF+ GS+N +A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 113 SANLNPKYTFDTFVVGSNNNLAHAAALAVAESPGEIY-----NPLFIYGGVGLGKTHLMH 167 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFL 271 AIA+ +K P +++Y+++E F AIR+ ++ RN D+LLIDD+QF+ Sbjct: 168 AIAHFILKNTPTSKILYVSSETFTNELIDAIRNKNNITTTEFREKYRNNDVLLIDDIQFI 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L +S KQ++ ++D+PP E+E+L+ R+RSR + G++V + DYE Sbjct: 228 IGKESTQEEFFHTFNTLYESKKQIIISSDKPPKEIETLEERLRSRFEWGLTVDIQSPDYE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ ++E NI+ EV+ ++A + ++ REL+GA ++V +T Sbjct: 288 TRMAILQK-----KEELEGYNIDNEVIKYIATNIKSNIRELEGALTKIVALSRLNKCDIT 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A+E L +++ G +++ + I ++V+ H+ ++ D+ S +R + +V PRQ+ MYL Sbjct: 343 LELAEEALKDIISPGAQREVTPDLIIQVVSDHFGLAPLDISSQKRNKEIVYPRQIVMYLC 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT IGR G RDHTTV+H K+ L D TLK +E+LK+ I+ Sbjct: 403 RNMTATPLQTIGRFLGGRDHTTVIHGADKITADLLKDETLKNTIEILKKKIN 454 >gi|323341100|ref|ZP_08081348.1| replication initiation protein DnaA [Lactobacillus ruminis ATCC 25644] gi|323091521|gb|EFZ34145.1| replication initiation protein DnaA [Lactobacillus ruminis ATCC 25644] Length = 461 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 146/470 (31%), Positives = 246/470 (52%), Gaps = 14/470 (2%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ESI+ +V + + + Y SW K N + L VP+ + + + Sbjct: 3 DLESIWHLVCTYFQAKTTEVSYRSWITTAKPLQFTDNTLLLEVPSVAHRDYWNKNLTDQA 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ + +L++ P+ A + +N S S K T S Sbjct: 63 DAFLEKTLGE--KITVLLKLPEEPNPFTIAEEEIKAEEQAAQSNYSDSLDFSVKTTSSNA 120 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ ++ F TF++G+ R+ A + NPLFI+ VGLGKTHL+ Sbjct: 121 SESQLNEKYTFDTFVDGNGTRM-----AYAAALAVAEEPANYYNPLFIYGGVGLGKTHLM 175 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N ++ PN R+ Y+++E F F ++I+ + + RN+DLLL+DD+QF Sbjct: 176 HAIGNRLLQDNPNARIKYVSSEAFANDFINSIKSKNSEAFRQKYRNLDLLLVDDIQFFAE 235 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L D KQ+V +DR P+E+ L R+ SR + G+SV + D+E R Sbjct: 236 KDGTQEEFFHTFNALYDDKKQIVLTSDRLPNEIPKLQKRLVSRFRWGLSVDITPPDFETR 295 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + E L+++++ L ++A + ++ REL+GA ++ +T Sbjct: 296 TAILRK-----KAESDFLDVSDDALSYIAGKIDSNIRELEGALMRVSAYAKLKHQRITTS 350 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E LS L + ++ I++IQ VAK+Y+++ ++L +RV+T+V PRQ+AMYLS+ Sbjct: 351 LAAEALSDLNQGTSSHELTIQEIQNKVAKYYHVTVSELRGKKRVKTIVIPRQIAMYLSRK 410 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG+ FG +DHTTV+HA K+ K ++ D +KK+V L + + Sbjct: 411 LTDASLPKIGQDFGGKDHTTVIHAYDKITKAVKKDSAIKKDVNALLKELK 460 >gi|317131009|ref|YP_004090323.1| chromosomal replication initiator protein DnaA [Ethanoligenens harbinense YUAN-3] gi|315468988|gb|ADU25592.1| chromosomal replication initiator protein DnaA [Ethanoligenens harbinense YUAN-3] Length = 447 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 130/467 (27%), Positives = 233/467 (49%), Gaps = 29/467 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++ V K ++ + +W ++ + N V ++F + I +RY + + Sbjct: 5 KEVWEGVCLFCKEKISDVAFKTWIYCMEPVELHSNEAVFFVRSDFQRNIIYDRYKQLLKD 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 F+ + I+ T S + ++++P + + S + Sbjct: 65 GFEHILGFPVDIRIV-----------TEDDKPNGYRSQYDFVVTQNPEDIEQTYASADY- 112 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + F TFI GSSN+ A A+ ++A + Y NPLFI+ GLGKTHLL A Sbjct: 113 -----EYTFDTFIVGSSNKFAHAASMAVASTPAMAY-----NPLFIYGGSGLGKTHLLHA 162 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + +K PN +++Y+ E F +IR N + ++ R D+LL+DD+QF+ GK Sbjct: 163 IRHEILKNNPNSKILYIKGEDFTNELVESIRQNSQIQFRNKYRQTDVLLVDDIQFVAGKE 222 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H NSL +S KQ+V +DRPP E+++L+ R+R+R + G+ + D+E R + Sbjct: 223 STQEEFFHTFNSLYESKKQIVLTSDRPPKEIQTLEDRLRTRFEWGLLADIQPPDFETRLA 282 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 I++ + E +NI +EV ++A + + R+L+GA ++ + + IA Sbjct: 283 IIRR-----KAELLGINIPDEVDEYIANRLKNNIRQLEGAVKKIKAYNLLTGDPPSIAIA 337 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + ++N + + I+ I V++ + +S +D+ R V RQV+MY+ + +T Sbjct: 338 QNAIRDILNDNQPVPVTIDRIIGEVSRTFGVSADDIKGKMRSGNVSTARQVSMYIIREIT 397 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG +F RDH+TV++A++KVE ++ LK VE + + I Sbjct: 398 QMSTSAIGEKFNGRDHSTVVYAIQKVEDDMKNKPHLKATVEDIIKNI 444 >gi|53715109|ref|YP_101101.1| chromosomal replication initiation protein [Bacteroides fragilis YCH46] gi|60683067|ref|YP_213211.1| chromosomal replication initiation protein [Bacteroides fragilis NCTC 9343] gi|265766960|ref|ZP_06094789.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_16] gi|61212532|sp|Q64PL4|DNAA_BACFR RecName: Full=Chromosomal replication initiator protein DnaA gi|81313879|sp|Q5L9D0|DNAA_BACFN RecName: Full=Chromosomal replication initiator protein DnaA gi|52217974|dbj|BAD50567.1| chromosomal replication initiator protein DnaA [Bacteroides fragilis YCH46] gi|60494501|emb|CAH09298.1| putative chromosomal replication initiator protein [Bacteroides fragilis NCTC 9343] gi|263253337|gb|EEZ24813.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 2_1_16] gi|301164582|emb|CBW24141.1| putative chromosomal replication initiator protein [Bacteroides fragilis 638R] Length = 476 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 242/471 (51%), Gaps = 17/471 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ +++ V Y +WF + + + VP+ F ++++++++ + K Sbjct: 9 LWNRCLEIIRDNVPESTYKTWFVPIVPLKYEDKTLIVQVPSQFFYEFLEDKFVDLLRKTL 68 Query: 98 QEEHSR----IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + V + S A + E T S +I + + K+P +L + Sbjct: 69 YKVIGDGTKLMYNVLVDKSSGATVNQESTTRSTAIPQSGLPRVDERKAPGLLRAPAVQ-D 127 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ + F TFIEG SN+++ + A+++AE + NPLF+H + G+GKTHL Sbjct: 128 LDPHLNPNYNFETFIEGYSNKLSRSVAEAVAENPAK----TVFNPLFLHGASGVGKTHLA 183 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q G Sbjct: 184 NAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAG 243 Query: 274 -KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E+R Sbjct: 244 VTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLLTRFKWGMVAELEKPTVELR 303 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAE 391 +IL+N + L EV+ ++A V S R+L+G ++ + + + + Sbjct: 304 KNILRN-----KIHRDGLQFPSEVIDYIAENVNESVRDLEGIVISIMAHSTIYNKEIDLD 358 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A ++ +V ETK + I+DI +V KH+++ + + + R R VV+ RQVAMYL+K Sbjct: 359 LAQRIVRKVVR-CETKAVTIDDIINVVCKHFDLESSAIHTKSRKREVVQARQVAMYLAKT 417 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S +IG+ G++DH TVLHA + V+ E D + ++E ++ L+ + Sbjct: 418 HTDFSTSKIGKFIGNKDHATVLHACKTVKGQCEVDKGFRSDLENIETLLKK 468 >gi|313894736|ref|ZP_07828297.1| chromosomal replication initiator protein DnaA [Selenomonas sp. oral taxon 137 str. F0430] gi|312976645|gb|EFR42099.1| chromosomal replication initiator protein DnaA [Selenomonas sp. oral taxon 137 str. F0430] Length = 487 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 132/484 (27%), Positives = 230/484 (47%), Gaps = 30/484 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ + + + + W R+ + + + L+VP F K +I+ RYL ++ Sbjct: 11 ALWRQILEKTDGILPQEAVTKWLPRIVPITQNGSELVLAVPDAFTKQFIEQRYLVLLSDA 70 Query: 97 FQEEHSRIQGVEILVRSVALP------------------SVEKTASSPSITKLSPINTNI 138 ++V P + ++ AS S + T Sbjct: 71 AHAALDAAYTFRLVVDPSTAPKSPAPREHASSSLDGAGTTADEIASYGSSSPAQGALTLT 130 Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 P +P + L+ ++ F F+ G SN+ + A+S+AE NP Sbjct: 131 PPVPDAGTSHAAAPDDATTLNPKYTFDAFVTGRSNQFSYAMAKSVAEAPG----LPSNNP 186 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFI+ VGLGKTHL+ A+ + + P+ RV+Y+ + F F SAI ++ Sbjct: 187 LFIYGGVGLGKTHLMHAVGHKILADHPDKRVLYIASMDFTNEFISAIGKKNTDEFREKYY 246 Query: 259 NIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 ID+LLIDD+QF G+ Q EF + N L DS +Q++ DR P E++ L+ R+ SR Sbjct: 247 AIDVLLIDDIQFFSGQLQTQAEFFQMFNKLRDSGRQIIMTCDRQPQEVKGLEDRLISRFS 306 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 GGV V + ++E R +IL+ + + +++I +V+ ++A V ++ REL+GA + Sbjct: 307 GGVVVDIQPPEFETRMAILQK-----KAQSEEIDIPGDVMTYIASRVDSNIRELEGALTR 361 Query: 378 LVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 L+ S + + L + + +++ +E I+ MV H+ I D+ S +R Sbjct: 362 LIKYASTMRLPIDESTCVAALGNYLRGETGRRITMEVIESMVCTHFKIKSEDIRSTKRSN 421 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 + PRQVAMYL +T S+P IG F +RDH+TV+HA +K++ ++ D ++ L Sbjct: 422 DIAFPRQVAMYLCHELTDVSWPTIGGFF-NRDHSTVIHAHKKIQSLVSEDAATDALIKSL 480 Query: 497 KRLI 500 I Sbjct: 481 TVQI 484 >gi|152989754|ref|YP_001355476.1| chromosomal replication initiation protein [Nitratiruptor sp. SB155-2] gi|151421615|dbj|BAF69119.1| chromosome replication initiator protein DnaA [Nitratiruptor sp. SB155-2] Length = 443 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 142/465 (30%), Positives = 234/465 (50%), Gaps = 37/465 (7%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 V LK ++ Y + ++L F +I P F+ W+K +Y I +LF Sbjct: 4 DKVLKMLKEEIPKIEYERYIKQLSFDEDASKADIAVYKAPNLFVANWVKTKYKAKIAQLF 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + VEIL S T K + K+ I + Sbjct: 64 ELQTGIETSVEILT--------------------SDKKTATKKEKTLDTKEHIPSTTSTK 103 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 ++ + F F+ GSSN+ A TAA S+AE Y NPLFI+ VGLGKTHLL AI Sbjct: 104 INPTYTFENFVVGSSNQFAYTAALSVAEKPGKAY-----NPLFIYGGVGLGKTHLLHAIG 158 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +IK V+Y T E FM F +R+ ++ R D+LLIDD+QFL GK Sbjct: 159 NFNIK--KEKVVIYATIEQFMNDFTYHLRNKTIERFREKYRQCDILLIDDVQFLSGKERT 216 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L + KQ+V +D+ P ++ L+ R++SR + G+ + + E + +I+ Sbjct: 217 QEEFFHTFNELHNDKKQIVLTSDQHPKKIAGLEDRLKSRFEWGLIADIQPPELETKIAII 276 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 K + + +N+++E++ ++A + ++ RE++G +L S +T ++A Sbjct: 277 KKKCELD-----GINLDDEIVNYIASHMDSNIREIEGVIIKLNAYSSLVNQKITLDLAKN 331 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L L + K + ++DI VA NI +++ S R R +V R++ +YL++ +TP Sbjct: 332 VLGELKKEQQ-KNITLKDIVDAVASDLNIKPSEIKSKSRSRQIVNARRIVIYLARTLTPN 390 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P + + FG +DHT+V HA++KV++M+E D K +++ L I Sbjct: 391 SMPALAQFFGMKDHTSVSHAMKKVKEMIEKDANFKLKIDELAHKI 435 >gi|313815417|gb|EFS53131.1| replication initiator protein DnaA [Propionibacterium acnes HL059PA1] gi|314916213|gb|EFS80044.1| replication initiator protein DnaA [Propionibacterium acnes HL005PA4] gi|314921816|gb|EFS85647.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA3] gi|314955285|gb|EFS99690.1| replication initiator protein DnaA [Propionibacterium acnes HL027PA1] gi|314959158|gb|EFT03260.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA1] gi|315102317|gb|EFT74293.1| replication initiator protein DnaA [Propionibacterium acnes HL046PA1] gi|327454252|gb|EGF00907.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA3] gi|327456312|gb|EGF02967.1| replication initiator protein DnaA [Propionibacterium acnes HL083PA2] gi|328756010|gb|EGF69626.1| replication initiator protein DnaA [Propionibacterium acnes HL087PA1] gi|328758853|gb|EGF72469.1| replication initiator protein DnaA [Propionibacterium acnes HL025PA2] Length = 474 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 235/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T + ++ V +W ++ + ++VP F + ++++ + Sbjct: 14 LNEAWTNILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 68 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 69 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTKPSARPTTT 128 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 129 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 183 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 184 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 243 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 244 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 303 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 304 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 358 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 359 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 418 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 419 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 473 >gi|183980036|ref|YP_001848327.1| chromosomal replication initiator protein DnaA [Mycobacterium marinum M] gi|226735828|sp|B2HI46|DNAA_MYCMM RecName: Full=Chromosomal replication initiator protein DnaA gi|183173362|gb|ACC38472.1| Chromosomal replication initiator protein DnaA [Mycobacterium marinum M] Length = 510 Score = 428 bits (1101), Expect = e-117, Method: Composition-based stats. Identities = 137/508 (26%), Positives = 244/508 (48%), Gaps = 54/508 (10%) Query: 37 SIFTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 +++ V + L + + P +W ++ +++ LSVP++F Sbjct: 11 AVWNAVVAELNGEPNTDGDAGTGTTLTSPLTPQQ-RAWLNLVQPLTIVEGFALLSVPSSF 69 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRS-------------------VALPSVEK 121 ++ I+ IT + + + + A P + Sbjct: 70 VQNEIERHLRTPITAALSRRLGQQIQLGVRIAPPPADDDDDSVAAAVEDPGLEASPETSQ 129 Query: 122 TASSPSITKLSPINTNISKSPIILGKQ-----TISPVFGSPLDSRFVFSTFIEGSSNRVA 176 S + P K+ T + G+ L+ R+ F TF+ G+SNR A Sbjct: 130 EVSDEIDDFGENAPNSRQSWPTHFKKRSTDADTSASAGGTSLNRRYTFDTFVIGASNRFA 189 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A +IAE + Y NPLFI GLGKTHLL A N + + P +RV Y++ E Sbjct: 190 HAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEE 244 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVV 295 F F +++RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V Sbjct: 245 FTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIV 304 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L + ++ Sbjct: 305 ISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPDD 359 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDI 414 VL +A ++ + REL+GA ++ S + +A+ +L L+ T ++ I Sbjct: 360 VLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADAGTMQISAATI 419 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 A++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++ Sbjct: 420 MAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMY 478 Query: 475 AVRKVEKMLETDITLKKEVELLKRLISE 502 A RK+ + + V+ L I + Sbjct: 479 AQRKILSEMAERREVFDHVKELTTRIRQ 506 >gi|104773258|ref|YP_618238.1| chromosomal replication initiation protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513229|ref|YP_812135.1| chromosomal replication initiation protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122276000|sp|Q04CX5|DNAA_LACDB RecName: Full=Chromosomal replication initiator protein DnaA gi|122984030|sp|Q1GC43|DNAA_LACDA RecName: Full=Chromosomal replication initiator protein DnaA gi|103422339|emb|CAI96847.1| Chromosomal replication initiator protein dnaA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116092544|gb|ABJ57697.1| DNA replication ATPase initiation [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325124856|gb|ADY84186.1| Chromosomal replication initiator protein dnaA [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 454 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 239/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + E + ++ ++++ Y +WF+ K S + + +SV T K + + Sbjct: 3 DLEKFWDSFNAEMRSEFNEVSYNAWFKNTKPVSFNKDTHELVISVQTPVAKGYWEQNISA 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + +V++ PS E+ + P Q Sbjct: 63 NLIQSAYAYAGIDIYPVFVVKNGPTPSSERM-----------LEPQPQAKPEKARPQGRE 111 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F FI+G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 112 FTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFY-----NPLFIFGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 167 LMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLLLVDDIQFF 226 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 227 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I+E L +VA V T+ REL+GA ++ + + + Sbjct: 287 TRIAILRK-----KAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQDIN 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A L+ L +++ ++I IQ +VA ++ S DL +RVR +V PRQ+AMYLS Sbjct: 342 IGLARSALADLKLVQKSRGLQISKIQEVVANYFQTSVPDLKGKKRVRQIVIPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + ++TD +K V L++++ Sbjct: 402 RELTDASLPKIGQEFGGKDHTTVMHACDKIARQIKTDTEIKSAVSDLRQML 452 >gi|116070875|ref|ZP_01468144.1| chromosomal replication initiation protein [Synechococcus sp. BL107] gi|116066280|gb|EAU72037.1| chromosomal replication initiation protein [Synechococcus sp. BL107] Length = 474 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 139/470 (29%), Positives = 242/470 (51%), Gaps = 19/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ++T V +L++++ + ++ + S + L P F ++ + L TI Sbjct: 15 TGDELWTKVRKQLQDKLSKPTFETFIRPTGCSSFSDGELKLLAPNPFTSIRLREQLLPTI 74 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ R V +L + A P E T + + + +P Q Sbjct: 75 AEMATSISGRAVQVTVLAET-AFPKAELTTDAAPLDSTNAAEQPREAAPARPSGQR---R 130 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLGKTHL+ Sbjct: 131 YLPGLNPRYVFGRFVVGQNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLGKTHLM 185 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+QF++G Sbjct: 186 QAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQFIEG 245 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ +QVV A+DRPPS++ L R+ SR Q G+ + D E R Sbjct: 246 KEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSPDLETR 305 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI 392 +IL+ + E ++ + +++ ++A T++ REL+GA + V FA I + Sbjct: 306 MAILQK-----KAEQERMALPRDLIQYIAGRFTSNIRELEGALTRAVA---FASITGLPM 357 Query: 393 ADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E ++ ++ TG+ + + + V++ ++++ +++ S+ R R V + RQV MYL + Sbjct: 358 TVESVAPMLDPTGQGVAVSPQQVIEKVSEVFDVTADEMCSSTRRRAVSQARQVGMYLMRQ 417 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG +DHTTV++A+ ++EK L +D L V+ ++ L+ Sbjct: 418 GTDLSLPRIGDTFGGKDHTTVMYAIEQIEKKLASDPKLAGLVQKVRDLLQ 467 >gi|89898823|ref|YP_521294.1| chromosomal replication initiation protein [Rhodoferax ferrireducens T118] gi|89343560|gb|ABD67763.1| chromosomal replication initiator protein DnaA [Rhodoferax ferrireducens T118] Length = 470 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 145/471 (30%), Positives = 241/471 (51%), Gaps = 21/471 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLET 92 + +S++ +L ++ + +W + L + + V F WI+ +Y + Sbjct: 17 DGQSLWQTCVDQLAQELPEQQFNTWIKPLSAQVTDDLAQITIFVANRFKLDWIRAQYSKR 76 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 IT L + + +E+ + P S + + PI + LG+ Sbjct: 77 ITSLLEMFSGQTIHLELAL----APREIFVRSQLTHRSMEPIPMDGVAE---LGEDRNPS 129 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L++ F T IEG++NR+A AA +A + H Y NPLFI+ VGLGKTHL Sbjct: 130 SLKNRLNTALTFDTLIEGTANRMARAAAMHVAGMPGHLY-----NPLFIYGGVGLGKTHL 184 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ N + QPN +V+Y+ AE F+ A + K+ ++DLLLIDD+QF Sbjct: 185 MHAVGNRLLADQPNAKVLYIHAEQFVSDVVKAYQRKTFDEFKERYHSLDLLLIDDVQFFA 244 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + +LL +V +D P L + R+ SR G++V + + EM Sbjct: 245 NKERTQEEFFNAFEALLAKKSHIVMTSDTYPKGLTDIHERLVSRFDSGLTVAIEPPELEM 304 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R +IL I++ + + EEV VA+ V ++ REL+GA +++ F ++ Sbjct: 305 RVAIL-----INKARVEGIVMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKDISI 359 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K Sbjct: 360 LLAREALRDLLSIQ-NRQISVENIQKTVADYYKIKIADMYSKKRPASIARPRQIAMYLAK 418 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 419 ELTQKSLPEIGELFGGRDHTTVLHAVRKIGGERQQMTELNQQLHVLEQTLK 469 >gi|558140|gb|AAA85913.1| putative [Synechocystis sp.] Length = 446 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 132/471 (28%), Positives = 228/471 (48%), Gaps = 36/471 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+CE+++ + L Q+ + +W + S+ + + V F+ ++ Y Sbjct: 2 VSCENLWQQALAILATQLTKPAFDTWIKASVLISLGDGVATIQVENGFVLNHLQKSYGPL 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + + V+++ + S+ SS + +P Sbjct: 62 LMEVLTDLTGQEITVKLITDGLEPHSLIGQESSLPME--------------------TTP 101 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ ++ FS F+ + A+ ++AE NPLF+ VGLGKTHL Sbjct: 102 KNATALNGKYTFSRFVWAHQSH-GHAASLAVAESPGR-----EFNPLFLCGGVGLGKTHL 155 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAIA+ ++ PN +V Y++ E F +AIR + + + R+ D LLIDD+QF++ Sbjct: 156 MQAIAHYRLEMYPNAKVYYVSTERFTNDLITAIRQDNMEDFRSYYRSADFLLIDDIQFIK 215 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H NSL ++ KQVV A+DR P + L R+ SR G+ + + D E Sbjct: 216 GKEYTQEEFFHTFNSLHEAGKQVVVASDRAPQRIPGLQDRLISRFSMGLIADIQVPDLET 275 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ + E ++ + +EV+ ++A T++ REL+GA + + S + + +T Sbjct: 276 RMAILQK-----KAEYDRIRLPKEVMEYIASHYTSNIRELEGALIRAIAYTSLSNVAMTV 330 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E +L+ V I +VA+HY + +LLSN R R V RQV MYL + Sbjct: 331 ENIAPVLNPPVEKVAAAPETI---ITIVAQHYQLKVEELLSNSRRREVSLARQVGMYLMR 387 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG +DHTTV+++ K+ ++ + D + + L I+ Sbjct: 388 QHTDLSLPRIGEAFGGKDHTTVMYSCDKITQLQQKDWETSQTLTSLSHRIN 438 >gi|291165897|gb|EFE27944.1| ATPase involved in DNA replication initiation [Filifactor alocis ATCC 35896] Length = 443 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 131/475 (27%), Positives = 246/475 (51%), Gaps = 40/475 (8%) Query: 33 VNCESIFTIVSSRLKNQVGP---DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +N + ++ V V ++Y ++ RL+ + ++ + L + I+ Y Sbjct: 1 MNAQELWEAVKQEFAATVSAKTTNIYKTFIDRLEPIMIKNDKLVLFATNQIILEMIEREY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L+ + + +++ + +++++ S++ S P K NI+ Sbjct: 61 LDILNGILEKKSNSSLSIQLIL------SLDDLNSEPKEEKKDIYQKNIT---------- 104 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L ++ F +F+ G++N +A +A ++A +H Y NPLFI+ VGLGK Sbjct: 105 --------LIPKYTFDSFVVGNNNVLAHSACVAVANDPAHSY-----NPLFIYGGVGLGK 151 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDM 268 THL+ AI N + + +++++YL++E F ++I+D+ ++ R ++D+LLIDD+ Sbjct: 152 THLMHAIGNHVLSQNKDVKILYLSSETFTNELINSIKDDTNEEFRNKYRKDVDILLIDDI 211 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ K Q EF H N+L + KQ++ ++DR P E+ L R+RSR + G+ V + Sbjct: 212 QFISEKERTQEEFFHTFNTLHGADKQIIISSDRAPKEIPMLADRLRSRFEMGLIVDIQPP 271 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP- 386 DYE R +IL+ + + + + V ++A+ + ++ REL+GA ++ Sbjct: 272 DYETRIAILRKKAQEEKHH-----VPDLVFEYIAKNIKSNIRELEGALTRIFAYSDLTKR 326 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E++ E L ++ + + ++ I+ VA+ ++I +D S R R + PRQ+AM Sbjct: 327 EITPELSQEALKNIFQSKQHVEITPTFIKEKVAESFSIQVDDFSSKGRKREIAYPRQIAM 386 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL + +T S P+IG FG RDHTTV+HA K+ ++ D K+ +E LK+ I Sbjct: 387 YLCRELTGLSLPKIGTEFGGRDHTTVMHACDKITSDIKIDEKTKELIENLKKDIQ 441 >gi|294505817|ref|YP_003569875.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] gi|294342145|emb|CBH22923.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] Length = 524 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 141/529 (26%), Positives = 241/529 (45%), Gaps = 69/529 (13%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV----HLSVPTNFLKAWIK 86 ++ + + + +++ V + +WF+ L+ HS+ + +P+ F WI+ Sbjct: 1 MDQSADRAWNECLDIIRDNVSRQSFTTWFEPLEAHSLEDEDDLRKLTIQLPSRFYYEWIE 60 Query: 87 NRYLETITKLFQEEHSRIQGVEILV----------------RSVALPSVEKTASSPSIT- 129 Y + K + V + A P+ ++A P+ Sbjct: 61 EHYFSLLRKTVTRVLGPHGRLFYDVVIEQDDPEDPDRGASMQLPARPADPESAPPPNAPD 120 Query: 130 --------------------------KLSPINTNISKSPIILGKQTISPVFGSP------ 157 + P + + F P Sbjct: 121 EPEAPPSSSEASAPSSEPSAPAPSGDEARPDDAQAGAEGDEKSAPPVQNPFAIPGLKNAE 180 Query: 158 ----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ + F FIEG NR+A +AA SIA NP ++ VGLGKTHL+ Sbjct: 181 VDNQLNDSYTFDRFIEGECNRLARSAAHSIATDPGE----TSFNPFLVYGGVGLGKTHLI 236 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N R + V Y+++E F F +I++N R +D+L++DD+QF G Sbjct: 237 QAIGNHVAARDASKTVFYVSSERFTTEFVQSIQENQIGEFSTFYRQVDVLIVDDVQFFGG 296 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H+ N+L + Q+V +ADRPP E++ L+ R+ SR Q G+S L + R Sbjct: 297 KEKTQEEFFHIFNALRQAGNQIVLSADRPPREIDGLEERLLSRFQWGLSADLKPPGLDTR 356 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 SIL+ + ED ++++++V+ +A+++ ++ REL+GA +L+ + + +T + Sbjct: 357 ISILRR-----KAEDDGIDLDDDVVEFIAQSIESNIRELEGALIRLLAHATLHQLDITLD 411 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E+L L + ++DIQR+V +H IS+ + R R V R RQ+AMY +K Sbjct: 412 LAKEVLHDLFQERAAT-LTVDDIQRIVCEHLGISQEKMRGKTRKRDVTRARQIAMYFTKK 470 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S +IG FG RDH+TV+HA VE + D + + V+ + + + Sbjct: 471 HTQHSLKDIGLHFGGRDHSTVIHANNAVEDRMADDESFRDTVDAIGQKL 519 >gi|253581087|ref|ZP_04858347.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847623|gb|EES75593.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 451 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 245/471 (52%), Gaps = 38/471 (8%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL-KAWIKNRYLETITK 95 + + +K + + + +W + L + V+ N+V + VP+ + +I +Y + Sbjct: 8 WDEILQIVKTEHDLSDVSFNTWLKPLTVYEVVDNVVTIIVPSEQVGLNYISKKYKLPLQV 67 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E + I + P + + + + Sbjct: 68 TISEVTGM--------------------ENCDINFILPEDVPKKEEVSPKAQSQDARCEE 107 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ ++ F TF+ GS+N+ A AA ++AE Y NPLFI+ GLGKTHL+ + Sbjct: 108 AHLNPKYTFDTFVVGSNNKFAQAAALAVAESPGDTY-----NPLFIYGGAGLGKTHLMHS 162 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFLQ 272 IA+ I N +V+Y+T+E F IR+ ++ RNID+LL+DD+QF+ Sbjct: 163 IAHFIIDHDENSKVLYVTSEEFTNELIETIRNGNNSAMTKFREKYRNIDVLLVDDIQFII 222 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H NSL + KQ++ ++D+PP ++E L+ R RSR + G+ + L DYE Sbjct: 223 GKESTQEEFFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADITLPDYET 282 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL ++E +INEEV+ ++A + ++ REL+GA N+++ +T Sbjct: 283 RMAILHK-----KEEMDGYDINEEVIKYIANNIKSNIRELEGAINKVMAFAKLEKKEVTL 337 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A++ L +++ E K + + I MVA+H++++ +DL N+R +V PRQ+AMYL + Sbjct: 338 ELAEQALKDIISPDEKKVITPDYIISMVAEHFDVTVDDLCGNKRNSKIVTPRQIAMYLCR 397 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + IG+ G+RDHTT++H + K+EK + D LK +E LK+ I+ Sbjct: 398 EIISTPLKSIGKCLGNRDHTTIMHGIDKIEKEINNDENLKNTIETLKKKIN 448 >gi|83815237|ref|YP_444159.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] gi|83756631|gb|ABC44744.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] Length = 524 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 142/529 (26%), Positives = 243/529 (45%), Gaps = 69/529 (13%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV----HLSVPTNFLKAWIK 86 ++ + + + +++ V + +WF+ L+ HS+ + +P+ F WI+ Sbjct: 1 MDQSADRAWNECLDIIRDNVSRQSFTTWFEPLEAHSLEDEDDLRKLTIQLPSRFYYEWIE 60 Query: 87 NRYLETITKLFQEEHSRIQGVEILV----------------RSVALPSVEKTASSPSIT- 129 Y + K + V + A P+ ++A P+ Sbjct: 61 EHYFSLLRKTVTRVLGPHGRLVYDVVIEQDDPEDPDRGASMQLPARPADPESAPPPNAPD 120 Query: 130 --------------------------KLSPINTNISKSPIILGKQTISPVFGSP------ 157 + P + + F P Sbjct: 121 EPEAPPSSSEASASSSEPSAPAPSGDEARPDDAQAGAEGDEKSAPPVQNPFAIPGLKNAE 180 Query: 158 ----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ + F FIEG+ NR+A +AA SIA NP ++ VGLGKTHL+ Sbjct: 181 VDNQLNDSYTFDRFIEGACNRLARSAAHSIATDPGE----TSFNPFLVYGGVGLGKTHLI 236 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N R + V Y+++E F F +I++N R +D+L++DD+QF G Sbjct: 237 QAIGNHVAARDASKTVFYVSSERFTTEFVQSIQENQIGEFSTFYRQVDVLIVDDVQFFGG 296 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H+ N+L + Q+V +ADRPP E++ L+ R+ SR Q G+S L + R Sbjct: 297 KEKTQEEFFHIFNALRQAGNQIVLSADRPPREIDGLEERLLSRFQWGLSADLKPPGLDTR 356 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 SIL+ + ED ++++++V+ +A+++ ++ REL+GA +L+ + + +T + Sbjct: 357 ISILRR-----KAEDDGIDLDDDVVEFIAQSIESNIRELEGALIRLLAHATLHQLDITLD 411 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E+L L + ++DIQR+V +H IS+ + S R R V R RQ+AMY +K Sbjct: 412 LAKEVLHDLFQERAA-TLTVDDIQRIVCEHLGISQEKMRSKTRKRDVTRARQIAMYFTKK 470 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S +IG FG RDH+TV+HA VE + D + + V+ + + + Sbjct: 471 HTQHSLKDIGLHFGGRDHSTVIHANNAVEDRMADDESFRDTVDAIGQKL 519 >gi|313122776|ref|YP_004033035.1| chromosomal replication initiator protein dnaa [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279339|gb|ADQ60058.1| Chromosomal replication initiator protein dnaA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 454 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 239/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + E + ++ ++++ Y +WF+ K S + + +SV T K + + Sbjct: 3 DLEKFWDSFNAEMRSEFNEVSYNAWFKNTKPVSFNKDTHELVISVQTPVAKGYWEQNISA 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + +V++ PS E+ + P Q Sbjct: 63 NLIQSAYAYAGIDIYPVFVVKNGPEPSSERM-----------LEPQPQAKPEKARPQGRE 111 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F FI+G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 112 FTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFY-----NPLFIFGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 167 LMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLLLVDDIQFF 226 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 227 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I+E L +VA V T+ REL+GA ++ + + + Sbjct: 287 TRIAILRK-----KAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQDIN 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A L+ L +++ ++I IQ +VA ++ S DL +RVR +V PRQ+AMYLS Sbjct: 342 IGLARSALADLKLVQKSRGLQISKIQEVVANYFQTSVPDLKGKKRVRQIVIPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + ++TD +K V L++++ Sbjct: 402 RELTDASLPKIGQEFGGKDHTTVMHACDKIARQIKTDTEIKSAVSDLRQML 452 >gi|296392441|ref|YP_003657325.1| chromosomal replication initiator protein DnaA [Segniliparus rotundus DSM 44985] gi|296179588|gb|ADG96494.1| chromosomal replication initiator protein DnaA [Segniliparus rotundus DSM 44985] Length = 487 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 135/483 (27%), Positives = 238/483 (49%), Gaps = 27/483 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVY---------ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 ++++ V ++L ++ + + +W K S+ +SVP++F Sbjct: 11 DAVWAEVLAQLSDESATEAFGYPPLTKQQRAWLPLAKPVSLGEGFALISVPSSFAADAFD 70 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL---SPINTNISKSPI 143 I + R + + + S + E S+ + Sbjct: 71 RGLRAPIAAALRRILGREIELNLRITSQNQETPEPKESAAAAGDGAQAEETGPAEEPPSE 130 Query: 144 ILGKQTISPVFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 GK ++P + L++R+ F TF+ G+SNR A A +++E + Y NPLFI Sbjct: 131 NSGKTALAPTTDTTTSLNARYTFETFVIGASNRFAHAATFAVSEAPARAY-----NPLFI 185 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 GLGKTHLL A + + + RV Y++ E F F +++RD+ + K R++D Sbjct: 186 WGDSGLGKTHLLHAAGHYTQRLFSGFRVKYVSTEEFTNDFINSLRDDRRVAFKQRYRDVD 245 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLL+DD+QF+ GK IQ EF H N+L +S KQ++ +DRPP +L +L+ R+R+R + G+ Sbjct: 246 LLLVDDIQFIAGKEGIQEEFFHTFNTLHNSNKQIIITSDRPPKKLAALEDRLRTRFEWGL 305 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + + E R +IL+ + I L + ++V +A + + REL+GA ++ Sbjct: 306 ITDVQPPELETRIAILRKKANID-----GLEVPDDVAELIASRIERNIRELEGALIRVTA 360 Query: 381 RHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 S LT+ +A+ +L LV T ++ + I A++++ + +L + R + Sbjct: 361 FASLNHQKLTSALAEMVLRDLVPDSPTLEISVSVILGATAEYFSTTIEELCGPVKTRPLA 420 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + RQ+AMYL + +T S P+IG+ FG RDHTTV++A +KV K L + +V L Sbjct: 421 QARQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYADKKVRKELAERRQVYDQVHELTAR 479 Query: 500 ISE 502 + + Sbjct: 480 VRQ 482 >gi|325475359|gb|EGC78544.1| chromosomal replication initiator protein dnaA [Treponema denticola F0402] Length = 469 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 141/474 (29%), Positives = 233/474 (49%), Gaps = 14/474 (2%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + + + ++ K ++ +++ WF K+ N V+LSVP+ F + + + Y Sbjct: 3 EWDYKIFWDEAVNQFKEELAFSIFSMWFLPSKYEKSTENTVYLSVPSKFFRDQMIHNYKN 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I K E + ++ +++ + K + K S +T Sbjct: 63 GIEKKLFELSGKKISIDFIIKPNTSEDLSKAENEGGNDKKEDAAKPSSAESKKKSVKTEG 122 Query: 152 PVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P L + F F+ G +N + AA +++ Y NP I+ VGLGKT Sbjct: 123 GRGQHPDLRPEYNFEDFVVGPNNNFGVNAAIAVSTNPGSAY-----NPFLIYGGVGLGKT 177 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI N L+V+Y+TAE F F ++ K R D+LLIDD+ F Sbjct: 178 HLMQAIGNKIWDTTK-LKVIYVTAENFTNEFVECVQKKMMPAFKSKYRKADVLLIDDIHF 236 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 QGK Q E H N L + KQ+V DRPP+EL++L R++SR + G++V L Y Sbjct: 237 FQGKVETQEELFHTFNELYEKNKQIVFTCDRPPAELKNLSQRLKSRFERGLNVDLQTPAY 296 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E+R++IL + + E I E + VA+ V+++ R+L+ A +L+ + Sbjct: 297 EIRYAIL-----LKKMEKHSTKIPNEFIDMVAKNVSSNVRDLEAALTKLIAYTELTKKTM 351 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A LL + + + + I+ IQ+ VA +++IS +D+ S +R ++ PRQ+AM+L Sbjct: 352 DEATAKNLLRDIFGSTRQRNVTIDLIQKTVADYFSISISDIKSKKRTKSFSFPRQIAMFL 411 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + MT S E+G FG RDHTT+LH K+E+ + D +L+K + L+ I E Sbjct: 412 CREMTECSTTELGNDFGGRDHTTILHGCNKIEEQIAADPSLEKIIHELRNTIKE 465 >gi|331004666|ref|ZP_08328128.1| chromosomal replication initiator protein DnaA [Lachnospiraceae oral taxon 107 str. F0167] gi|330409593|gb|EGG89033.1| chromosomal replication initiator protein DnaA [Lachnospiraceae oral taxon 107 str. F0167] Length = 462 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 132/477 (27%), Positives = 245/477 (51%), Gaps = 31/477 (6%) Query: 35 CESIFTIVSSRLKN--QVGPDVYASWFQRLKFHSVLHN-----IVHLSVPTNFLKAWIKN 87 +S + + + L++ ++ P Y +W + + S+ + + ++VP+ K ++ Sbjct: 5 IKSSWEEIITFLRDDYELSPVSYNTWIKPMIPTSIEKDAKGIYTLIITVPSLPFKTYVTK 64 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +Y ++ +E V + S K I + + P+ K Sbjct: 65 KYSLYLSVSIEEVTLIKCNVVFI-----------EKSEQETKKSQNILIDNKRHPVNNIK 113 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + LD + F TF+ G SN +A A ++AE NP FI+ VGL Sbjct: 114 -----LLSANLDPLYTFDTFVVGKSNDLAHATAIAVAESPGSQNPGEHYNPFFIYGGVGL 168 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ +IA+ ++ P+ ++Y+++E F+ + A++++ + RN+D+LLIDD Sbjct: 169 GKTHLMHSIAHYILEHNPDSIILYVSSEKFLNEYIDALKNSNLQEYRSKYRNVDVLLIDD 228 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ GK IQ E H N+L + KQ++ ++DRPP EL++L+ R+RSR GV+V + Sbjct: 229 IQFIGGKDAIQEELFHTFNALYEQKKQIILSSDRPPMELKNLEERLRSRFAWGVAVEIFS 288 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D+E R +IL+ S++E NI+ EV+ +A + ++ R L+GA N+L Sbjct: 289 PDFETRMAILR-----SKEERDGKNIDNEVIQFIATNIKSNIRMLEGALNKLYAMSRLNK 343 Query: 387 --ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++A +L ++ K+ E I +VA H+NI+ +L + R V R + Sbjct: 344 NQEIDIDLAKSVLKDMITPDAPTKITSEYIATVVADHFNITVAELKAKGRKEPVATARHI 403 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +YL + MT + +IG+ GDRDH+T++++ + + + +D L + +E +K+ IS Sbjct: 404 TVYLCRKMTNDTQTKIGQFLGDRDHSTIVNSEDVITRRIVSDNELNQTIETIKKKIS 460 >gi|253566260|ref|ZP_04843714.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 3_2_5] gi|251945364|gb|EES85802.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 3_2_5] Length = 476 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 128/471 (27%), Positives = 243/471 (51%), Gaps = 17/471 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ +++ V Y +WF + + + VP+ F ++++++++ + K Sbjct: 9 LWNRCLEIIRDNVPESTYKTWFVPIVPLKYEDKTLIVQVPSQFFYEFLEDKFVDLLRKTL 68 Query: 98 QEEHSR----IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + V + S A + E T S +I + + K+P +L + Sbjct: 69 YKVIGDGTKLMYNVLVDKSSGATVNQESTTRSTAIPQSGLPRVDERKAPGLLRAPAVQ-D 127 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ + F TFIEG SN+++ + A+++AE + NPLF+H + G+GKTHL Sbjct: 128 LDPHLNPNYNFETFIEGYSNKLSRSVAEAVAENPAK----TVFNPLFLHGASGVGKTHLA 183 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q G Sbjct: 184 NAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAG 243 Query: 274 -KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E+R Sbjct: 244 VTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLLTRFKWGMVAELEKPTVELR 303 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAE 391 +IL+N + L EV+ ++A V S R+L+G ++ + + + + Sbjct: 304 KNILRN-----KIHRDGLQFPSEVIDYIAENVNESVRDLEGIVISIMAHSTIYNKEIDLD 358 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A ++ +V+ ETK + I+DI +V KH+++ + + + R R VV+ RQVAMYL+K Sbjct: 359 LAQRIVRKVVH-CETKAVTIDDIINVVCKHFDLESSAIHTKSRKREVVQARQVAMYLAKT 417 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S +IG+ G++DH TVLHA + V+ E D + ++E ++ L+ + Sbjct: 418 HTDFSTSKIGKFIGNKDHATVLHACKTVKGQCEVDKGFRSDLENIETLLKK 468 >gi|297622253|ref|YP_003703687.1| chromosomal replication initiator protein DnaA [Truepera radiovictrix DSM 17093] gi|297163433|gb|ADI13144.1| chromosomal replication initiator protein DnaA [Truepera radiovictrix DSM 17093] Length = 444 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 145/467 (31%), Positives = 249/467 (53%), Gaps = 31/467 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +I+ + +++++ + +WF++++ + + + + VP +F + W+KN Y + Sbjct: 6 NAIWDDILEYVRDKIPEVEFRTWFKQVRPLGIENGVFMIGVPHSFARDWLKNHYSPVLEH 65 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 ++ + V V V+ P+ E+ P T S + + Sbjct: 66 ALKDLGAASPRVGFQV--VSFPTTEQP------DIFQPQTTGDDSSQVKRPR-------- 109 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ ++VFS F+ G +N +A AA ++AE Y NPLFI+ GLGKTHL+ A Sbjct: 110 --LNPKYVFSNFVVGPNNNLASAAALAVAEAPGRAY-----NPLFIYGDAGLGKTHLMHA 162 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + +A +R P L + Y+T E F +AIR++ +D R++D+LL+DD+QF+ GK Sbjct: 163 VGHAVAERLPQLYIEYVTTEAFTNDLINAIREDRMTAFRDRYRSVDVLLVDDVQFIAGKE 222 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L +S KQ++ ++DRPP ++ +L+ R+RSR + G+ + + E R + Sbjct: 223 RTQEEFFHTFNALYESGKQIILSSDRPPKDIPTLENRLRSRFEWGLITDIQAPELETRIA 282 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIA 393 ILK E + I +V+ ++AR VT++ REL+GA +++ S + L + Sbjct: 283 ILK-----MNAEYRGVKIPPDVIDYIARQVTSNIRELEGALVRVILYASMNQVELNRQTV 337 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 LS + E + +E+I R A H+ DL S R +V PRQVAMYL + +T Sbjct: 338 AAALSDVYAPSEL-NLSMEEILRATAFHFEADAEDLRSKGRRHELVVPRQVAMYLMRELT 396 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S+PEIG+ F RDH+TV++AV+KV + L D L+ ++ +K + Sbjct: 397 SHSYPEIGQFFSGRDHSTVVYAVQKVGEQLAKDRELEMRIQAIKSDL 443 >gi|255691401|ref|ZP_05415076.1| ATPase [Bacteroides finegoldii DSM 17565] gi|260623047|gb|EEX45918.1| ATPase [Bacteroides finegoldii DSM 17565] Length = 473 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 130/477 (27%), Positives = 239/477 (50%), Gaps = 15/477 (3%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E N ++ +K+ V Y +WF + ++L +P+ F ++ R+ Sbjct: 1 MIESNHVVLWNRCLDIIKDNVPDTTYNTWFAPIVPLKYEDKTLYLQIPSQFFYEILEERF 60 Query: 90 LETITKLFQEEHSRIQG--VEILVRSVALPSVEKT-ASSPSITKLSPINTNISKSPIILG 146 ++ I K + ++V ++P+ +S T ++P N Sbjct: 61 VDLIRKTLYKVIGEGTKLMYNVMVDKTSIPNQTVNLEASNRSTAVTPKNIFDGNKAPNFL 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ + F FIEG SN+++ + A+++A NPLF++ + G Sbjct: 121 QAPAVQDLDPHLNPNYNFENFIEGYSNKLSRSVAEAVALKPG----GTAFNPLFLYGASG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHL AI + P RV+Y++A F ++ ++R+N + + + ID+L+ID Sbjct: 177 VGKTHLANAIGTKIKEIYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIID 236 Query: 267 DMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L Sbjct: 237 DIQEFAGVTKTQNNFFHIFNHLHQNGKQLILTSDRAPVLLQGIEERLLTRFKWGMVAELE 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 E+R +IL+N + L EEV+ ++A V S R+L+G ++ R + F Sbjct: 297 KPTVELRKNILRN-----KIHRDGLQFPEEVIDYIAENVNESVRDLEGIVIAIMARSTIF 351 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++A ++ +V+ ETK + I+DI ++V KH+++ + + R R VV+ RQ+ Sbjct: 352 NKEIDMDLAQHIVHGVVHN-ETKAVTIDDILKVVCKHFDLEPAAIHTKSRKREVVQARQI 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + EV+ ++ L+ Sbjct: 411 AMYLAKNHTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFNAEVQEIEALLK 467 >gi|238915977|ref|YP_002929494.1| chromosomal replication initiator protein DnaA [Eubacterium eligens ATCC 27750] gi|238871337|gb|ACR71047.1| chromosomal replication initiator protein DnaA [Eubacterium eligens ATCC 27750] Length = 451 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 145/468 (30%), Positives = 247/468 (52%), Gaps = 34/468 (7%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRYLETITK 95 + + K + + + +W + LK +S+ N++ L + +I+ +YL+ I Sbjct: 11 WDFILQTFKKEYDIQDISFKTWIKPLKIYSLEGNVITLISSEGEMGTVYIERKYLKFIEI 70 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E + E VR +++ ++ I+ +S N N++ Sbjct: 71 SICE----VMNKEYSVRLISVEEKKEEDLKKKISSVSANNNNVATQ-------------- 112 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ + F TF+ G++N +A A+ ++AE Y NPLFI+ GLGKTHL+QA Sbjct: 113 -NLNPNYTFDTFVVGTNNNLAHAASLAVAETPGQIY-----NPLFIYGGAGLGKTHLMQA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 IA+ I P+ +V+Y+T+E F +++ N ++ RNID+LLIDD+QF+ GK Sbjct: 167 IAHFIIASDPSKKVLYVTSETFTNELIESVKTNKNTEFRNKYRNIDVLLIDDIQFIIGKL 226 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N L KQ+V ++DRPP E+E+L R+R+R + G+ V + + YE + + Sbjct: 227 STQEEFFNTFNDLYLLGKQIVISSDRPPKEMETLPDRLRTRFESGLPVDIQIPTYETKMA 286 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIA 393 I+ + E ++ EV +VA +T+S REL+GA +L + LTAE A Sbjct: 287 IINK-----KSEALGIDFPYEVKDYVATNITSSIRELEGALTKLSAYSKLSHTPLTAEFA 341 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L L++ K++ E I +VA+H++I D++S+RR + PRQ+AMYL + MT Sbjct: 342 ENTLKDLISPYSKKEITPELIIEVVAEHFHIKPEDIISHRRSADIAFPRQIAMYLCRQMT 401 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 IG+ G+RDHTTV++ K+ K T+ + K V++L + ++ Sbjct: 402 QTPLEAIGKAMGNRDHTTVIYGADKIAKETVTNESTKNVVDILIKKLN 449 >gi|295398135|ref|ZP_06808184.1| DNA-directed DNA replication initiator protein [Aerococcus viridans ATCC 11563] gi|294973654|gb|EFG49432.1| DNA-directed DNA replication initiator protein [Aerococcus viridans ATCC 11563] Length = 444 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 236/470 (50%), Gaps = 31/470 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ V+ K ++ + +W + L + ++ ++L + K I+ Y I Sbjct: 4 LNRLWDYVTQYFKEELPKTSFDTWIKDLDPVAFENDTLYLKAISVLHKDHIEKHYSIQIR 63 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ E + + + ++ + + ++ + I Sbjct: 64 QVLFEYLNHDVNLVVSLKD-------------------DRSQSANQIQVNNHNDNIEDNG 104 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ ++ F F+ G N++A AA ++AE Y NPLF VGLGKTHL+Q Sbjct: 105 SDLLNPKYTFDNFVVGEGNKMAHAAALAVAEGPGRDY-----NPLFFFGGVGLGKTHLMQ 159 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + ++ PN ++ Y+++E F F +AIR N R +D+LL+DD+QF+ K Sbjct: 160 AIGHEVLRTNPNAKIKYVSSETFTNDFINAIRKNTTDAFHQEYRTVDMLLVDDIQFIGNK 219 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N L ++ K +V +DR S++ L+ R+ SR + G+S + D E R Sbjct: 220 QSTQEEFFHTFNVLYNNNKHIVLTSDRDASQIPELEDRLVSRFKQGLSTDITPPDLETRI 279 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL+N + L I ++ L ++A + ++ REL+GA + LT Sbjct: 280 AILRN-----KANVNGLQIPDDTLSYIAGQIDSNIRELEGALTSVQAFAVMNQEDLTPNT 334 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L + + ++ I +I VA+++N+ +DL +RVR +V PRQ+AMYLS+ + Sbjct: 335 AAKALRNYKSNVKSNSPTIPNILETVAQYFNLQVSDLKGKKRVRQIVVPRQIAMYLSREL 394 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S P+IG+ FG +DHTTVLHA K++K ++ L+++V+ ++RL+ + Sbjct: 395 TDASLPKIGQEFGGKDHTTVLHAYDKIKKDIDEKSELERDVDSIRRLLEK 444 >gi|42525520|ref|NP_970618.1| chromosomal replication initiation protein [Treponema denticola ATCC 35405] gi|14194665|sp|O87546|DNAA_TREDE RecName: Full=Chromosomal replication initiator protein DnaA gi|3676692|gb|AAC62071.1| chromosomal replication initiator protein [Treponema denticola] gi|41815531|gb|AAS10499.1| chromosomal replication initiator protein DnaA [Treponema denticola ATCC 35405] Length = 469 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 142/474 (29%), Positives = 233/474 (49%), Gaps = 14/474 (2%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + + + ++ K ++ +++ WF K+ N V+LSVP+ F + + + Y Sbjct: 3 EWDYKIFWDEAVNQFKEELAFSIFSMWFLPSKYEKSTENTVYLSVPSKFFRDQMIHNYKN 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I K E + ++ +++ + K + K S +T Sbjct: 63 GIEKKLFELSGKKISIDFIIKPNTSEDLSKAENEGGNDKKEDAAKPSSAESKKKSVKTEG 122 Query: 152 PVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P L + F F+ G +N + AA +++ Y NP I+ VGLGKT Sbjct: 123 GRGQHPDLRPEYNFEDFVVGPNNNFGVNAAIAVSTNPGSAY-----NPFLIYGGVGLGKT 177 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI N L+V+Y+TAE F F ++ K R D+LLIDD+ F Sbjct: 178 HLMQAIGNKIWDTTK-LKVIYVTAENFTNEFVECVQKKMMPAFKSKYRKADVLLIDDIHF 236 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 QGK Q E H N L + KQ+V DRPP+EL++L R++SR + G++V L Y Sbjct: 237 FQGKVETQEELFHTFNELYEKNKQIVFTCDRPPAELKNLSQRLKSRFERGLNVDLQTPAY 296 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E+R++IL + + E I E + VA+ V+++ R+L+ A +L+ + Sbjct: 297 EIRYAIL-----LKKMEKHSTKIPNEFIDMVAKNVSSNVRDLEAALTKLIAYTELTKKTM 351 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 A LL + + + + I+ IQR VA +++IS +D+ S +R ++ PRQ+AM+L Sbjct: 352 DEATAKNLLRDIFGSTRQRNVTIDLIQRTVADYFSISISDIKSKKRTKSFSFPRQIAMFL 411 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + MT S E+G FG RDHTT+LH K+E+ + D +L+K + L+ I E Sbjct: 412 CREMTECSTTELGNDFGGRDHTTILHGCNKIEEQIAADPSLEKIIHELRNTIKE 465 >gi|332883707|gb|EGK03987.1| chromosomal replication initiator protein DnaA [Dysgonomonas mossii DSM 22836] Length = 467 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 131/474 (27%), Positives = 242/474 (51%), Gaps = 14/474 (2%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 +V+ + +++ ++ V + +WF + S + + + VP+ F ++++++++ Sbjct: 3 QVSAQKLWSNCLKVFQDNVTEAAFKTWFLPIVPLSYENRVFTIQVPSQFFYEYLEDKFID 62 Query: 92 TITKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + E I IL+ + V+ + S T + N +K P ++ Sbjct: 63 LLKATLYREIGSDTILQYRILMENTTNTLVDYRGDAKSSTDKIVLGKNTNKVPNPF-QKV 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 ++ F S L++++ F F EG SN++A TA ++I NPLF+H + G+GK Sbjct: 122 VADDFDSQLNNKYTFDNFFEGESNKLARTAGETITRNPGK----TAFNPLFVHGTSGVGK 177 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL AI N+ ++ P RV+Y++A F ++A A R N + + + ID+L+IDD+ Sbjct: 178 THLCHAIGNSIKEQYPEKRVLYVSAHLFKVQYADAGRYNTTNDFINFYQGIDVLIIDDIH 237 Query: 270 FLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L G + Q+ H+ N L + KQ++ D+ PSEL ++ R+ +R + G++ + D Sbjct: 238 ELAGIEKTQNTLFHIFNHLHQNNKQLILTCDKSPSELHGVEERLLTRFRWGLTTKVDNPD 297 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPI 387 ++R IL+N + L+I E+V+ ++A VT + R+L+G ++ + Sbjct: 298 KQLRLKILQN-----KILHDGLSIPEDVVDYIAENVTDNARDLEGIIVSIMAHSLVYNKE 352 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A ++ + E KK+ I I+ V YNI + + R R +V+ RQVAMY Sbjct: 353 IDLPLARRVIGQAIKKIEAKKITINTIESAVCDFYNIKSELIHTASRKRQIVQARQVAMY 412 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LSK T S +IG G ++H TVLHA R V + +E D ++EV +++ + Sbjct: 413 LSKSYTEMSLAQIGSLIGKKNHATVLHACRTVREQMEVDKAFREEVAEIEKKLK 466 >gi|190572092|ref|YP_001969937.1| chromosomal replication initiation protein [Stenotrophomonas maltophilia K279a] gi|254522083|ref|ZP_05134138.1| chromosomal replication initiator protein DnaA [Stenotrophomonas sp. SKA14] gi|226735852|sp|B2FUW1|DNAA_STRMK RecName: Full=Chromosomal replication initiator protein DnaA gi|190010014|emb|CAN85568.1| putative chromosomal replication initiator protein DnaA [Stenotrophomonas maltophilia K279a] gi|219719674|gb|EED38199.1| chromosomal replication initiator protein DnaA [Stenotrophomonas sp. SKA14] Length = 443 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 150/468 (32%), Positives = 245/468 (52%), Gaps = 28/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ RL+ + P+ +W + L+ + + + L P F+ ++ YL I +L Sbjct: 2 DAWSRSLERLEAEFPPEDVHTWLKPLQA-DLRVDSLVLYAPNAFIVDQVRELYLARIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 ++ + + P + ++P T + ++S P + F Sbjct: 61 LAHFAGF---SDVFLEIGSRPRPVEAQNAPVSTP----SAHVSSEPQVP--------FAG 105 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LD+ + F+ F+EG SN++ L AA A+ NPL ++ GLGKTHL+ A Sbjct: 106 NLDNHYTFANFVEGRSNQLGLAAAFQAAQKPG----DRAHNPLLLYGGTGLGKTHLMFAA 161 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A+++ K + +D LLIDD+QF GK Sbjct: 162 GNAMRQANPGAKVLYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDALLIDDIQFFAGKDR 221 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+ R++SRL G+SV + D+E R +I Sbjct: 222 TQEEFFHTFNALFDGKQQIILTCDRYPREVEGLEARLKSRLAWGLSVAIEPPDFETRAAI 281 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N L R +F +T E A Sbjct: 282 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLTARANFTGRAITTEFAQ 336 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 337 ETLRDLLRAQQ-QAISIPNIQKTVADYYGLQIKDLLSKRRTRSLARPRQVAMALTKELTE 395 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++ETD L+++ + L R +SE Sbjct: 396 HSLPEIGDAFAGRDHTTVLHACRQIRTLMETDGKLREDWDKLIRKLSE 443 >gi|15805044|ref|NP_293728.1| chromosomal replication initiation protein [Deinococcus radiodurans R1] gi|6457661|gb|AAF09596.1|AE001864_2 chromosomal replication initiator protein [Deinococcus radiodurans R1] Length = 454 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 149/458 (32%), Positives = 235/458 (51%), Gaps = 16/458 (3%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ V Y +WF +K V + L V +F K W ++ YLE + + + Sbjct: 1 MRKNVSDLEYTTWFAPVKPLGVQEGSLLLGVRNSFTKDWFRDHYLELLLAALRSLGAEHP 60 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 VE V A ++ + + L+ ++ F Sbjct: 61 QVEFQVLPAAQDAL--LLPNDPPPAPEAAAPTPKTKAAPTPPPSTPGDNRKTLNPKYTFE 118 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ G +N +A AA ++AE Y NPLFI+ VGLGKTHL+ A+ + +R P Sbjct: 119 NFVVGPNNNLAHAAALAVAESPGKAY-----NPLFIYGDVGLGKTHLMHAVGHYLAERFP 173 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 R+ Y++ E F +AIRD+ ++ R++DLLL+DD+QFL GK Q EF H Sbjct: 174 EKRIEYVSTETFTNELINAIRDDKTTQFRNRYRSVDLLLVDDIQFLAGKERTQEEFFHTF 233 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L +S KQ++ ++DRPP ++++L+ R+RSR + G+ + +YE R +ILK Sbjct: 234 NALYESNKQIILSSDRPPKDIQTLEGRLRSRFEWGLITDIQSPEYETRVAILK-----MN 288 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNT 403 E + I +EVL +AR VT++ REL+GA ++V S + + A + LS++ Sbjct: 289 AEQGHITIPQEVLELIARQVTSNIRELEGALMRVVAFASLNNVPFSRAAAAKALSNVFAP 348 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 E K + + D+ R VA HY + + + + R R +V PRQVA YL + +T S PEIG+ Sbjct: 349 QEAK-VEMTDVLRQVAAHYGTTPDLIRGSGRARDIVVPRQVAQYLIRALTDHSLPEIGQF 407 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDH+TV+HAV K+ + + D L V L+ I Sbjct: 408 FG-RDHSTVMHAVSKITEQMGKDPELAATVNTLRNRIQ 444 >gi|330952332|gb|EGH52592.1| chromosomal replication initiation protein [Pseudomonas syringae Cit 7] Length = 388 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 221/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 14 DEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 73 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 74 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 128 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 129 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 188 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 189 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 243 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 244 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 302 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 303 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 362 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 363 RKINELKESDADIREDYKNLLRTLT 387 >gi|313835170|gb|EFS72884.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA2] gi|314929146|gb|EFS92977.1| replication initiator protein DnaA [Propionibacterium acnes HL044PA1] gi|314970905|gb|EFT15003.1| replication initiator protein DnaA [Propionibacterium acnes HL037PA3] gi|328905785|gb|EGG25561.1| chromosomal replication initiator protein DnaA [Propionibacterium sp. P08] Length = 500 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 136/475 (28%), Positives = 234/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ + ++ V +W ++ + ++VP F + ++++ + Sbjct: 40 LNEAWSNILTK----VSKPN-RAWLSNTTPVTMHASTAMVAVPNEFARDRLESKMRYELE 94 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 95 ELLSDHFHKAIHLAITIDPDLELALGAPDREDEEEEVLPAQFVPKVTVRVTEPSTQPADT 154 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + + L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 155 VDDDESNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 209 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 210 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTREFRRSYRDVDVLLVDDIQ 269 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL+ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 270 FLESKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 329 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 330 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIHTNIRELEGALIRVTAFASLNQQP 384 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 385 VDTSLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 444 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 445 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 499 >gi|5354184|gb|AAD42393.1|AF157493_1 chromosomal replication initiator protein [Zymomonas mobilis subsp. mobilis ZM4] Length = 484 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 153/478 (32%), Positives = 254/478 (53%), Gaps = 25/478 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ L+ + G + SW + L I+ L+ P+ F+ WI + + + Sbjct: 14 AAWSEARQILRKKCGSRTFESWLKSLMLADFDSQKKIIRLACPSEFMANWISSHLSDELL 73 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ I V++ VR+ + + + K +P Sbjct: 74 LAWRTVWPGIAEVKVSVRNPESQPLLLDVTEIELPLGDQPRPLPKKPAKKKQSVPATPKS 133 Query: 155 GSP-----------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 SP + R+ F F+ G +N +A AA + AE + NPLF++ Sbjct: 134 TSPEKKAEGEDQNQFEERYNFDNFVVGKANDLAYRAACTFAEG-----GKLDFNPLFLYG 188 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 GLGKTHL+ A+ +KR PN +Y++AE FM+ F +++R + K LR+ DLL Sbjct: 189 GTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKARLRSADLL 248 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+QF+ GK Q EF H +N ++ + +++V +ADR P +LE ++ RI SRL G+ Sbjct: 249 MIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISADRSPQDLERIESRILSRLSWGLVA 308 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D+E+R +I+ +L P++++ E+++ +A+ + T+ REL+GA N++V Sbjct: 309 DVNPADFELRLNIILKKLEA----MPQVSMPEDIVFFLAKRICTNVRELEGALNRVVAYA 364 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + + + E L+ L+ T + + +EDIQ+ V HY++ D+ S RR R + RP Sbjct: 365 TLSNRPINMDFVTETLADLLRT-TQQPVTVEDIQKRVCDHYHLKLADMSSKRRDRVIARP 423 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RQVAMYLSK +T RS PEIG+RFG RDHTTV+HA+R++EK+ TD + +V LL R Sbjct: 424 RQVAMYLSKQLTSRSLPEIGQRFGGRDHTTVIHAIRQIEKLRITDEDVDSDVRLLMRQ 481 >gi|255011256|ref|ZP_05283382.1| chromosomal replication initiation protein [Bacteroides fragilis 3_1_12] gi|313149067|ref|ZP_07811260.1| chromosomal replication initiator protein dnaA [Bacteroides fragilis 3_1_12] gi|313137834|gb|EFR55194.1| chromosomal replication initiator protein dnaA [Bacteroides fragilis 3_1_12] Length = 475 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 127/471 (26%), Positives = 243/471 (51%), Gaps = 17/471 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ +++ V Y +WF + + + VP+ F ++++++++ + K Sbjct: 9 LWNRCLEIIRDNVPESTYKTWFVPIVPLKYEDKTLIVQVPSQFFYEFLEDKFVDLLRKTL 68 Query: 98 QEEHSR----IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + V + S + E T S +I + + K+P +L + Sbjct: 69 YKVIGDGTKLMYNVLVDKSSGTTVNQESTTRSTAIPQSGLPRVDERKAPGLLRAPAVQ-D 127 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ + F TFIEG SN+++ + A+++AE + NPLF+H + G+GKTHL Sbjct: 128 LDPHLNPNYNFETFIEGYSNKLSRSVAEAVAENPAK----TVFNPLFLHGASGVGKTHLA 183 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q G Sbjct: 184 NAIGTRIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFAG 243 Query: 274 -KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E+R Sbjct: 244 VTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLLTRFKWGMVAELEKPTVELR 303 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAE 391 +IL+N + L EV+ ++A V S R+L+G ++ + + + + Sbjct: 304 KNILRN-----KIHRDGLQFPSEVIDYIAENVNESVRDLEGIVISIMAHSTIYNKEIDLD 358 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A ++ +V + ETK + I+DI +V KH+++ + + + R R VV+ RQVAMYL+K Sbjct: 359 LAQRIVRKVVRS-ETKAVTIDDIINVVCKHFDLESSAIHTKSRKREVVQARQVAMYLAKT 417 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S +IG+ G++DH TVLHA + V+ E D + + ++E ++ L+ + Sbjct: 418 HTDFSTSKIGKFIGNKDHATVLHACKTVKGQCEVDKSFRSDLENIETLLKK 468 >gi|325685106|gb|EGD27237.1| DNA-directed DNA replication initiator protein [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 454 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 239/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + E + ++ ++++ Y +WF+ K S + + +SV T K + + Sbjct: 3 DLEKFWDSFNAEMRSEFNEVSYNAWFKNTKPVSFNKDTHELVISVQTPVAKGYWEQNISA 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + +V++ PS E+ + P Q Sbjct: 63 NLIQSAYAYAGIDIYPVFVVKNGPAPSSERM-----------LEPQPQAKPEKARPQGRE 111 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F FI+G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 112 FTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFY-----NPLFIFGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 167 LMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLLLVDDIQFF 226 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 227 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I+E L +VA V T+ REL+GA ++ + + + Sbjct: 287 TRIAILRK-----KAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQDIN 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A L+ L +++ ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS Sbjct: 342 IGLARSALADLKLVQKSRGLQISKIQEVVANYFQTSVPELKGKKRVRQIVIPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + ++TD +K V L++++ Sbjct: 402 RELTDASLPKIGQEFGGKDHTTVMHACDKIARQIKTDTEIKSAVSDLRQML 452 >gi|29347553|ref|NP_811056.1| chromosomal replication initiation protein [Bacteroides thetaiotaomicron VPI-5482] gi|253572014|ref|ZP_04849418.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 1_1_6] gi|298383755|ref|ZP_06993316.1| ATPase involved in DNA replication initiation [Bacteroides sp. 1_1_14] gi|38257553|sp|Q8A5U5|DNAA_BACTN RecName: Full=Chromosomal replication initiator protein DnaA gi|29339453|gb|AAO77250.1| chromosomal replication initiator protein dnaA [Bacteroides thetaiotaomicron VPI-5482] gi|251838194|gb|EES66281.1| chromosomal replication initiator protein dnaA [Bacteroides sp. 1_1_6] gi|298263359|gb|EFI06222.1| ATPase involved in DNA replication initiation [Bacteroides sp. 1_1_14] Length = 470 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 125/478 (26%), Positives = 242/478 (50%), Gaps = 15/478 (3%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E N ++ +K+ V Y +WF + + + +P+ F ++ ++ Sbjct: 1 MIESNHVVLWNRCLEVIKDNVPETTYNTWFAPIVPLKYEDKTLIVQIPSQFFYEILEEKF 60 Query: 90 LETITKLFQEEHSRIQG--VEILVRSVALPSVEKT-ASSPSITKLSPINTNISKSPIILG 146 ++ + K + ++V ++P+ +S T ++P + Sbjct: 61 VDLLRKTLYKAIGEGTKLMYNVMVDKTSIPNQTVNLEASNRSTAVTPKSIVGGNKAPSFL 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K L+ + F FIEG SN+++ + A+++A+ + NPLF++ + G Sbjct: 121 KAPAVQDLDPHLNPNYNFENFIEGYSNKLSRSVAEAVAQNPA----GTAFNPLFLYGASG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHL AI + + RV+Y++A F ++ ++R+N + + + ID+L+ID Sbjct: 177 VGKTHLANAIGTKIKELYADKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDVLIID 236 Query: 267 DMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L Sbjct: 237 DIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLLTRFKWGMVAELE 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 E+R +IL+N + L EV+ ++A V S R+L+G ++ R + F Sbjct: 297 KPTVELRKNILRN-----KIHRDGLQFPPEVIDYIAENVNESVRDLEGIVIAIMARSTIF 351 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++A ++ +V+ ETK + I+DI ++V KH+++ + + + R R VV+ RQ+ Sbjct: 352 NKEIDLDLAQHIVHGVVHN-ETKAVTIDDILKVVCKHFDLEASAIHTKSRKREVVQARQI 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL+K T S +IG+ G++DH TVLHA + V+ LE D + + EV+ ++ L+ + Sbjct: 411 AMYLAKNYTDFSTSKIGKFIGNKDHATVLHACKTVKGQLEVDKSFQAEVQEIESLLKK 468 >gi|257456142|ref|ZP_05621339.1| chromosomal replication initiator protein DnaA [Treponema vincentii ATCC 35580] gi|257446228|gb|EEV21274.1| chromosomal replication initiator protein DnaA [Treponema vincentii ATCC 35580] Length = 464 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 143/467 (30%), Positives = 244/467 (52%), Gaps = 18/467 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + +LK+++G + WF R+ + +++ LSVP+ F + ++ RY I K Sbjct: 9 FWEETVKQLKDEIGEQEISMWFSRIVYERASDSVIVLSVPSGFYRDNVRQRYEILIEKKL 68 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKL--SPINTNISKSPIILGKQTISPVFG 155 E +E +++ + + + ++ +T SP + S+ + + ++ P+ Sbjct: 69 LELLGSRISIEFEIKAPQIMNTQPVSTKNPLTSATSSPAAFHASQKSVPVEEKKKHPL-- 126 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R+ F F+ + N + AA ++++ Y NPL I+ VGLGKTHL+QA Sbjct: 127 --LNERYTFDKFVIDADNPLPANAAIAVSKNPGTAY-----NPLLIYGGVGLGKTHLMQA 179 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I NA + NL+++Y AE F + + + N K+ RN D+LL+DD+ FL+ K Sbjct: 180 IGNALYQNT-NLKILYAPAETFTNEYIAHVNKNKMHEFKNKYRNADVLLLDDIHFLEKKE 238 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q E H N+L +S KQ+V DRP EL++L R+RSR G+S+ L + YE R + Sbjct: 239 GTQEELFHTFNALYESNKQIVFTCDRPVEELKNLTDRLRSRFTRGLSIDLKIPSYETRCA 298 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIAD 394 IL + +D +I +EV+ +A+ V+++ R+L+ A +L +T E A Sbjct: 299 IL-----FKKLQDEHFSIPDEVVHLIAKNVSSNVRDLESALTKLEAYSELTGPITLENAQ 353 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 LL + + I+ I ++VA ++ IS DL +R + + PRQVAMYL++ MT Sbjct: 354 RLLQDTFGSPRQHNISIDTILKIVADYFGISYIDLKGKKRTKNISFPRQVAMYLAREMTE 413 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S EIG G RDHTT++H +K+E + +L+ + LK+ I+ Sbjct: 414 FSTTEIGMELGGRDHTTIMHGHQKIETQTAIEPSLEVTIAELKKRIT 460 >gi|225016760|ref|ZP_03705952.1| hypothetical protein CLOSTMETH_00672 [Clostridium methylpentosum DSM 5476] gi|224950428|gb|EEG31637.1| hypothetical protein CLOSTMETH_00672 [Clostridium methylpentosum DSM 5476] Length = 454 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 123/474 (25%), Positives = 234/474 (49%), Gaps = 23/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + +F V ++++ P Y W + ++ L + + F K + +Y+ Sbjct: 1 MESFSQ-VFNAVKQSCESELSPTAYGLWIKPIEPVEFKEGTAVLYLKSEFQKNIVMTKYM 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 ++ F++ VEI+ E+ S + S + + + ++ Sbjct: 60 HMLSAAFKDILGFDVAVEII--------TEEAIDSQLLPHESDLKGITQTAEPVKKQKLA 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 G + F TFI GSSN A A +++A+ S Y NPLFI+ GLGKT Sbjct: 112 ESYNGGEY--EYTFDTFIVGSSNTFAYAACKAVAQQQSGAY-----NPLFIYGPSGLGKT 164 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI++ ++ P+ ++Y+ E F +AI ++ R +D+LL+DD+QF Sbjct: 165 HLLMAISHEIKRQNPDTNILYINGEAFANELITAIGRQATNEFREKYRRVDILLMDDIQF 224 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK Q EF + N L KQ+V +DRPP ++++L+ R+R+R + G+ + D+ Sbjct: 225 LAGKTQTQEEFFYTFNDLHQVGKQIVLTSDRPPKDIKTLEERLRTRFEWGLLADISPPDF 284 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +I++ + + + + +EV +A + + R+L+GA ++ Sbjct: 285 ETRIAIIRR-----KAQLLDIEMPDEVAEFIANRLKNNIRQLEGAVKKIKAYKLLAGSPP 339 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + +A ++ ++N + + +E I + V + + +S D+ S++R + RQ+AMY+ Sbjct: 340 SISMAQTVIRDILNDNQPTPVTVERIIKEVGRTFGVSEEDIRSSKRSSQISTARQIAMYI 399 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T EIG+ F RDH T+++A++KVE M++ D K+ +E + + I + Sbjct: 400 VREITQMPLAEIGKEFNGRDHATIVYALQKVENMIQKDSHQKEIIEDIIKNIRD 453 >gi|332531209|ref|ZP_08407122.1| chromosomal replication initiation protein [Hylemonella gracilis ATCC 19624] gi|332039316|gb|EGI75729.1| chromosomal replication initiation protein [Hylemonella gracilis ATCC 19624] Length = 477 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 140/470 (29%), Positives = 241/470 (51%), Gaps = 15/470 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L ++ + +W + L + + L V F WI+ +Y + I Sbjct: 18 HSLWQACVDQLAQELPEQQFNTWIRPLSARLADDYSSLTLYVVNRFKLDWIRAQYSKRIA 77 Query: 95 KLFQEEHSRIQGVEILVRS-VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L + + + +E+ + + +V +S + P + + + + Sbjct: 78 ALLESIYGQPIALELAIAPRENVNAVRNQIASFVDAESLPEAIPVEEVSYSVASVQSASS 137 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L++ F T +EG++NR+A AA +A Y NPLFI+ S GLGKTHL+ Sbjct: 138 SRHRLNTALTFDTLVEGTANRMARAAAMHVAGSPGQLY-----NPLFIYGSTGLGKTHLI 192 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N + +P +V+Y AE+F+ A + KD ++DLLLIDD+QF G Sbjct: 193 HAVGNRLLAEKPGAKVLYTHAEWFVTDVVKAYQRKTFDEFKDKYHSLDLLLIDDVQFFAG 252 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + +LL +V +D P L ++ R+ SR G++V + + EMR Sbjct: 253 KDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLLDINQRLVSRFDSGLTVAIEPPELEMR 312 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL I++ + ++ EEV VA+ V ++ REL+GA +++ F ++ + Sbjct: 313 VAIL-----INKAQSEGASMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQ 367 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A E L L++ +++ +E+IQ+ VA +Y I D+ S +R ++ RPRQ+AMYL+K Sbjct: 368 LAREALRDLLSIQ-NRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKE 426 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHAVRK+ + L +++ +L++ + Sbjct: 427 LTQKSLPEIGELFGGRDHTTVLHAVRKISGERQQLTELNQQLHVLEQTLK 476 >gi|289677549|ref|ZP_06498439.1| chromosomal replication initiation protein [Pseudomonas syringae pv. syringae FF5] Length = 383 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 145/385 (37%), Positives = 222/385 (57%), Gaps = 18/385 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRVALT 178 + PS P+ S+ +Q V G S L+ F F F+EG SN++A Sbjct: 9 NEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARA 68 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E F+ Sbjct: 69 AAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFV 123 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV+ Sbjct: 124 ADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQVILT 183 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ + Sbjct: 184 SDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPHDAA 238 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++IQR Sbjct: 239 FFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDNIQR 297 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVLHA Sbjct: 298 TVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHAC 357 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ ++ E+D ++++ + L R ++ Sbjct: 358 RKINELKESDADIREDYKNLLRTLT 382 >gi|322433660|ref|YP_004215872.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX9] gi|321161387|gb|ADW67092.1| chromosomal replication initiator protein DnaA [Acidobacterium sp. MP5ACTX9] Length = 492 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 141/491 (28%), Positives = 242/491 (49%), Gaps = 40/491 (8%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + L+ ++ + +W + ++ + + + +P+ I ++Y + I + + Sbjct: 14 WVRILGALEKKINRQSFETWLKPTRYSRTVGKTLFVRIPSAQF-EHIGDKYGDLIEEAIE 72 Query: 99 EEHSRIQGVEILV--RSVALPSVEKTA---SSPSITKLSP-------------------- 133 + I+ V + P V + PS +P Sbjct: 73 KLGFEIESVTFETPQQDPTAPRVREDGGFGPMPSHATNTPGGTNGNGAGNGATSGAIRQN 132 Query: 134 -INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 N + + + S L+ R+ F F+ GS N+ A AAQ++AE S Y Sbjct: 133 GARGNAAPAAPSTEQARFDWNAASQLNPRYQFDAFVIGSGNQFAAAAAQAVAERPSKAY- 191 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPLF++ VG+GKTHL+ AI + +R P+ + Y++ E F +++R + Sbjct: 192 ----NPLFLYGGVGMGKTHLMHAIGHEVKRRMPHTSISYVSGEKFTNEMINSVRYDKMTT 247 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 +D RN+D+LLIDD+QFL GK Q EF H N+L ++ KQ+V A+DRPP EL + R Sbjct: 248 FRDKFRNVDVLLIDDIQFLAGKERTQEEFFHTFNALHETMKQIVIASDRPPKELADFEDR 307 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +RSR + G+ + D E + +IL+ + E + +V + +A V T+ REL Sbjct: 308 LRSRFEWGLIADIQPPDLETKVAILQR-----KAEAESTTLPTDVALFIASNVRTNVREL 362 Query: 372 DGAFNQLVFRHSFAPIL-TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +GA +++ S + + +A + L ++T +K+ IE IQR VA+ + + +L Sbjct: 363 EGALIRVIAWCSHHGVECSLPVAQQCLKQFIDTQ-VRKITIEAIQRAVAEQFGMRVPELK 421 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 R +V PRQ+AMYL+K MT S PEIGR+FG + HTTV+H++ K+++ D L Sbjct: 422 QKNNSRQIVVPRQIAMYLAKQMTEASLPEIGRQFGGKHHTTVMHSIAKIDEQRRADKDLN 481 Query: 491 KEVELLKRLIS 501 + + L +S Sbjct: 482 RTINKLMETLS 492 >gi|56552252|ref|YP_163091.1| chromosomal replication initiation protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761682|ref|ZP_04759769.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260752246|ref|YP_003225139.1| chromosomal replication initiation protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|59802902|sp|Q9S493|DNAA_ZYMMO RecName: Full=Chromosomal replication initiator protein DnaA gi|56543826|gb|AAV89980.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis ZM4] gi|241373990|gb|EER63523.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258551609|gb|ACV74555.1| chromosomal replication initiator protein DnaA [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 484 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 153/478 (32%), Positives = 255/478 (53%), Gaps = 25/478 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ L+ + G + SW + L I+ L+ P+ F+ WI + + + Sbjct: 14 AAWSEARQILRKKCGSRTFESWLKSLMLADFDSQKKIIRLACPSEFMANWISSHLSDELL 73 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 ++ I V++ VR+ + + + K +P Sbjct: 74 LAWRTVWPGIAEVKVSVRNPESQPLLLDVTEIELPLGDQPRPLPKKPAKKKQSVPATPKS 133 Query: 155 GSP-----------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 SP + R+ F F+ G +N +A AA + AE + NPLF++ Sbjct: 134 TSPEKKAEGEDQNQFEERYNFDNFVVGKANDLAYRAACTFAEG-----GKLDFNPLFLYG 188 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 GLGKTHL+ A+ +KR PN +Y++AE FM+ F +++R + K LR+ DLL Sbjct: 189 GTGLGKTHLMHAVGIEYLKRHPNSTALYMSAEKFMYDFVASMRAKDTHSFKARLRSADLL 248 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 +IDD+QF+ GK Q EF H +N ++ + +++V +ADR P +LE ++ RI SRL G+ Sbjct: 249 MIDDVQFIAGKDSTQEEFFHTMNEVITAGRRLVISADRSPQDLERIESRILSRLSWGLVA 308 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D+E+R +I+ +L P++++ E+++ +A+ + T+ REL+GA N++V Sbjct: 309 DVNPADFELRLNIILKKLEA----MPQVSMPEDIVFFLAKRICTNVRELEGALNRVVAYA 364 Query: 383 SF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + + + E L+ L+ T + + + +EDIQ+ V HY++ D+ S RR R + RP Sbjct: 365 TLSNRPINMDFVTETLADLLRTTQQR-VTVEDIQKRVCDHYHLKLADMSSKRRDRVIARP 423 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RQVAMYLSK +T RS PEIG+RFG RDHTTV+HA+R++EK+ TD + +V LL R Sbjct: 424 RQVAMYLSKQLTSRSLPEIGQRFGGRDHTTVIHAIRQIEKLRITDEDVDSDVRLLMRQ 481 >gi|254526330|ref|ZP_05138382.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9202] gi|221537754|gb|EEE40207.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9202] Length = 464 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 139/466 (29%), Positives = 242/466 (51%), Gaps = 17/466 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P F W++ Y +TI K Sbjct: 7 IWAEVQQSLQKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCQTIEKAA 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +E V+++ +S S + T ++ T + + + Sbjct: 67 KEICG--HDVKVVFKSETNISSDSTNKENLDEQIVNHKTKLFHNNNQDISPKNRSKNPNG 124 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLGKTHL+QAI Sbjct: 125 LNLRYVFKRFVVGPNSRLAHAAALAVAESPGR-----EFNPLFICGGVGLGKTHLMQAIG 179 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + ++ P +V Y++ E F S IR + ++D RN+DL+LIDD+QFL+GK Sbjct: 180 HYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNVDLILIDDIQFLEGKEYT 239 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ + D E R +IL Sbjct: 240 QEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMTADIQPPDLETRTAIL 299 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + E ++++ +++ +A T++ REL+GAF + V FA I + + Sbjct: 300 QK-----KAEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVA---FASITGLPMTVQS 351 Query: 397 LSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ ++ + + + V+ + +S ++L+S+ R + V + RQ+ MYL + T Sbjct: 352 IAPMLDPNSVGVVVTPTQVIKKVSDFFKVSTDELISSSRRKPVSQARQIGMYLMRHGTDL 411 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG +DHTTV++A+ +VEK L TD + +V+ ++ L+ Sbjct: 412 SLPRIGDEFGGKDHTTVMYAIEQVEKKLSTDPNIASQVQKIRDLLQ 457 >gi|261493280|ref|ZP_05989807.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496476|ref|ZP_05992856.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307679|gb|EEY09002.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311130|gb|EEY12306.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 449 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 151/475 (31%), Positives = 254/475 (53%), Gaps = 31/475 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L Sbjct: 1 MEQIVSSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SSENGELTLYAQNQFVENWVKDKFL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT+L + ++ + + ++ P+ + K+SP N S G Sbjct: 60 SEITELAR-FLAKNDNLVVTLKVGIKPTEQ--------PKVSPNLKNESSEFSNTG---- 106 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 F + L+ F F++G SN++A AQ + + + NPL +A GLGKT Sbjct: 107 ---FKTGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESH----CNPLSFYAGTGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDM 268 HLL AI N +KR P RV+Y+ E F AI +N A +K R++D+L+IDD+ Sbjct: 160 HLLHAIGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDDI 219 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL K +Q EF HLLNSL + KQ++ +D P ++ +D I+SRL GG+S + Sbjct: 220 QFLANKPKVQEEFLHLLNSLFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATIEPP 279 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-P 386 + E R +IL+ + + ++ E+ + + + T+ REL+GA N+++ Sbjct: 280 ELETRVAILRQ-----KALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLR 334 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + E L L + + IE+IQR+VA++Y I D+ S R R++ RPRQ+AM Sbjct: 335 PITVDAVRETLQDLFAS-FDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMAM 393 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L+K +T S PEIGR FG RDHTTV+HA + + ++ +T+ ++++ L R +S Sbjct: 394 ALAKELTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLS 448 >gi|313202491|ref|YP_004041148.1| chromosomal replication initiator protein dnaa [Paludibacter propionicigenes WB4] gi|312441807|gb|ADQ78163.1| chromosomal replication initiator protein DnaA [Paludibacter propionicigenes WB4] Length = 463 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 133/472 (28%), Positives = 240/472 (50%), Gaps = 15/472 (3%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N + ++ S +K+ + Y +WF + ++I L VP+ F +I+ +Y++ + Sbjct: 4 NHDQLWNRCLSVIKDNISEASYNTWFAPIVALKYENSIFVLQVPSQFFVEYIEEKYIDLL 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS-P 152 E G + R + S + PS + + + S S + P Sbjct: 64 RMTLYREVG--VGTRLEYRVLIDKSSGRGTQIPSAAEQTKQKSTGSNSSYVNPYHKPQLP 121 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ + F+ IEG+SN++A TA SI NPLF++ G+GKTHL Sbjct: 122 EIDPQLNPAYNFNNLIEGNSNKLARTAGISIGNEPGKN----IFNPLFVYGQSGVGKTHL 177 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI + + P RV+Y++A F ++ A+R N + + + ID+L++DD+Q Sbjct: 178 ANAIGVMTKQLHPEKRVLYVSANTFQIQYTDAVRSNTVNDFLNFYQTIDVLIVDDIQEFA 237 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q+ F H+ N L + KQ+V +DR P + L+ R+ +R + G+S + D+E+ Sbjct: 238 GKTGTQNTFFHIFNHLHQTGKQLVLTSDRSPIVMVGLEQRLLTRFKWGLSAEIEKPDFEL 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R SIL++++ L I++EV+ +A V + R+L+G L+ + A + + Sbjct: 298 RRSILQSKIYRD-----GLEISDEVVDFIAEHVVDNVRDLEGVLVSLLAHSTLANMPIDV 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A++++S +VN K +E I+ +V +++++S + + + R R VV+ RQ+AMYLSK Sbjct: 353 ALAEKVISRIVNI-TRKVNTVEKIRDVVCEYFSLSIDAISTKSRKREVVQARQIAMYLSK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S IG G RDH TVLHA + V ++++D + V ++ + + Sbjct: 412 QLTKSSLSSIGNTIGQRDHATVLHACKIVNDLMDSDKNFRSSVREIEEKLKQ 463 >gi|227902594|ref|ZP_04020399.1| DNA-directed DNA replication initiator protein [Lactobacillus acidophilus ATCC 4796] gi|227869683|gb|EEJ77104.1| DNA-directed DNA replication initiator protein [Lactobacillus acidophilus ATCC 4796] Length = 465 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 238/471 (50%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 N E + + ++ + Y +WF+ K S + + V K + + Sbjct: 13 NFEKFWQHFNDEMRARFNEVAYNAWFKNTKPISYNQKTHELKIQVQNPVAKGYWEKNLSS 72 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + V + + + + + +P N+ +P ++ + Sbjct: 73 QLIQSAYGYAG--------VELLPVFQISEDSDTPERIVTPEPQHNLQTTPTRAPQREFA 124 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 125 KDLK--LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 177 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 178 LMQAIGHQMLVERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFF 237 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 238 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 297 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I+++ L ++A V T+ REL+GA ++ + + Sbjct: 298 TRIAILRR-----KAEAEGLTIDDDTLDYIASQVDTNIRELEGALVKVQAYATIEKADID 352 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS Sbjct: 353 INLAREALVDLKLVQKNRGLQIPKIQEVVANYFQTSTAELKGKKRVRQIVIPRQIAMYLS 412 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK+++ Sbjct: 413 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKTDADIKTAVFDLKQML 463 >gi|123968156|ref|YP_001009014.1| chromosomal replication initiation protein [Prochlorococcus marinus str. AS9601] gi|166214692|sp|A2BQ46|DNAA_PROMS RecName: Full=Chromosomal replication initiator protein DnaA gi|123198266|gb|ABM69907.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. AS9601] Length = 464 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 140/466 (30%), Positives = 240/466 (51%), Gaps = 17/466 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P F W++ Y ETI K Sbjct: 7 IWAEVQQSLQKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCETIEKAA 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +E V+++ +S S + + + K T S + Sbjct: 67 KEICG--HDVKVVFKSETNTSSDLSNEDKANEKNVHHKTRSFSSNNQNNSSKNQFKNPNG 124 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLGKTHL+QAI Sbjct: 125 LNLRYVFKRFVVGPNSRLAHAAALAVAESPGR-----EFNPLFICGGVGLGKTHLMQAIG 179 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + ++ P +V Y++ E F S IR + ++D RN+DL+LIDD+QFL+GK Sbjct: 180 HYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNVDLILIDDIQFLEGKEYT 239 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ + D E R +IL Sbjct: 240 QEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMTADIQPPDLETRTAIL 299 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + E ++++ +++ +A T++ REL+GAF + V FA I + + Sbjct: 300 QK-----KAEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVA---FASITGLPMTVQS 351 Query: 397 LSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ ++ + + + V+ + +S ++L+S+ R + V + RQ+ MYL + T Sbjct: 352 IAPMLDPNSVGVVVTPKQVINKVSDFFKVSTDELISSSRRKPVSQARQIGMYLMRHGTDL 411 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG +DHTTV++A+ +VEK L D + +V+ ++ L+ Sbjct: 412 SLPRIGDEFGGKDHTTVMYAIEQVEKKLSIDPNIASQVQKIRDLLQ 457 >gi|330876355|gb|EGH10504.1| chromosomal replication initiation protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 395 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 222/388 (57%), Gaps = 18/388 (4%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFSTFIEGSSNRV 175 T PS P+ S+ +Q V G S L+ F F F+EG SN++ Sbjct: 18 ATHDEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQL 77 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ HGY NPLF++ VGLGKTHL+ A+ N +K+ PN +VVYL +E Sbjct: 78 ARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSE 132 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 F+ A++ N K R++D LLIDD+QF K Q EF H N+LL+ +QV Sbjct: 133 RFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNALLEGGQQV 192 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +DR P E+E L+ R++SR G++V + + E R +IL + + + K+++ Sbjct: 193 ILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAIL-----MKKADQAKVDLPH 247 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 + +A+ + ++ REL+GA +++ F +T E+ E L L+ K + +++ Sbjct: 248 DAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIELIRESLKDLLALQ-DKLVSVDN 306 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQR VA++Y I +DLLS RR R+V RPRQVAM LSK +T S PEIG FG RDHTTVL Sbjct: 307 IQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVL 366 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ E+D ++++ + L R ++ Sbjct: 367 HACRKINELKESDADIREDYKNLLRTLT 394 >gi|282853039|ref|ZP_06262376.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J139] gi|282582492|gb|EFB87872.1| chromosomal replication initiator protein DnaA [Propionibacterium acnes J139] Length = 500 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 138/475 (29%), Positives = 233/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + ++ V +W ++ + ++VP F + ++++ + Sbjct: 40 LNEAWANILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 94 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 95 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTEPSARPTTT 154 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 155 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 209 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 210 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 269 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 270 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 329 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 330 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQS 384 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 385 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 444 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG F +DHTTV+HA RK+ ++ + +V + I + Sbjct: 445 LCRELTDLSLPKIGAEFSGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 499 >gi|153821932|ref|ZP_01974599.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae B33] gi|126520552|gb|EAZ77775.1| chromosomal DNA replication initiator DnaA [Vibrio cholerae B33] Length = 370 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 133/380 (35%), Positives = 213/380 (56%), Gaps = 13/380 (3%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSI 183 ++ S S ++ + F+ F+EG SN++ L AA+ + Sbjct: 1 AAESSAPAQLAQRKPIHKTWDDDSAAADITHRSNVNPKHKFNNFVEGKSNQLGLAAARQV 60 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 ++ Y NPLF++ GLGKTHLL A+ NA + PN +VVY+ +E F+ Sbjct: 61 SDNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNNPNAKVVYMHSERFVQDMVK 115 Query: 244 AIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPP 302 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P Sbjct: 116 ALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYP 175 Query: 303 SELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVAR 362 E+ ++ R++SR G++V + + E R +IL + + ED ++++ +EV +A+ Sbjct: 176 KEISGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKAEDHQIHLPDEVAFFIAK 230 Query: 363 TVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKH 421 + ++ REL+GA N+++ +F +T + E L L+ K + I++IQ+ VA++ Sbjct: 231 RLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEY 289 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 Y I DLLS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E+ Sbjct: 290 YKIKVADLLSKRRSRSVARPRQLAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQ 349 Query: 482 MLETDITLKKEVELLKRLIS 501 + E +K++ L R +S Sbjct: 350 LREESHDIKEDYSNLIRTLS 369 >gi|300811995|ref|ZP_07092451.1| chromosomal replication initiator protein DnaA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497021|gb|EFK32087.1| chromosomal replication initiator protein DnaA [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 454 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 238/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + E + ++ ++++ Y +WF+ K S + + +SV T K + + Sbjct: 3 DLEKFWDSFNAEMRSEFNEVSYNAWFKNTKPVSFNKDTHELVISVQTPVAKGYWEQNISA 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + +V+ + P+ + + P Q Sbjct: 63 NLIQSAYAYAGIDIYPVFVVK-----------NGPASSSERMLEPQPQAKPEKARPQGRE 111 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F FI+G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 112 FTKDLRLNEKYTFENFIQGEGNKLAAGAALAVADNPGTFY-----NPLFIFGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 167 LMQAIGHQMLAERPDAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTADLLLVDDIQFF 226 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 227 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFAWGLQVEITPPDLE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I+E L +VA V T+ REL+GA ++ + + + Sbjct: 287 TRIAILRK-----KAESEGLEIDESTLDYVASQVDTNIRELEGALVKVQAQATIQKQDIN 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A L+ L +++ ++I IQ +VA ++ S DL +RVR +V PRQ+AMYLS Sbjct: 342 IGLARSALADLKLVQKSRGLQISKIQEVVANYFQTSVPDLKGKKRVRQIVIPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + ++TD +K V L++++ Sbjct: 402 RELTDASLPKIGQEFGGKDHTTVMHACDKIARQIKTDTEIKSAVSDLRQML 452 >gi|78184461|ref|YP_376896.1| chromosomal replication initiation protein [Synechococcus sp. CC9902] gi|123729943|sp|Q3AYH5|DNAA_SYNS9 RecName: Full=Chromosomal replication initiator protein DnaA gi|78168755|gb|ABB25852.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9902] Length = 462 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 141/473 (29%), Positives = 245/473 (51%), Gaps = 20/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++T V L++++ + ++ + S + + L P F ++ + L Sbjct: 1 ME-TGDELWTKVRKGLQDKLSKPTFETFIRPTGCSSFSNGELKLLAPNPFTSIRLREQLL 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI ++ R V +L + ALP E A + ++ +P Q Sbjct: 60 PTIAEMATSISGRSVQVTVLAET-ALPKSEFVADAAAVELTDVSEPRRESAPARPSGQR- 117 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLGKT Sbjct: 118 --RYLPALNPRYVFGRFVVGQNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLGKT 170 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+QF Sbjct: 171 HLMQAIGHYRLEIDPGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQF 230 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ +QVV A+DRPPS++ L R+ SR Q G+ + D Sbjct: 231 IEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSPDL 290 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E ++ + +++ ++A T++ REL+GA + V FA I Sbjct: 291 ETRMAILQK-----KAEQERMALPRDLIQYIAGRFTSNIRELEGALTRAVA---FASITG 342 Query: 390 AEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++ TG+ + + + V++ ++++ ++ S+ R R V + RQV MYL Sbjct: 343 LPMTVESVAPMLDPTGQGVAVSPQQVIEKVSEVFDVTAEEMCSSTRRRAVSQARQVGMYL 402 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV++A+ ++EK L +D L +V+ ++ L+ Sbjct: 403 MRQGTDLSLPRIGDTFGGKDHTTVMYAIEQIEKKLASDPKLAGQVQKVRDLLQ 455 >gi|304437932|ref|ZP_07397878.1| DNA-directed DNA replication initiator protein [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369072|gb|EFM22751.1| DNA-directed DNA replication initiator protein [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 483 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 127/487 (26%), Positives = 231/487 (47%), Gaps = 28/487 (5%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E N ++ V + + D W + S+ + L+V + K ++++R Sbjct: 4 EKNLADLWQKVLDKTSGIIHEDAVKKWILPIVPVSLNDKELLLAVGEDIQKQYVESRLGA 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP----------------SITKLSPIN 135 + Q+ I++ A E A+ + + + Sbjct: 64 LFGDVIQKALGAGYTFRIVIDPAAASQKEPPAAKEIPVEPAMAEEAAAGHIAANEQATYP 123 Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 T S T +P + L+ ++ F F+ G SN+ A+++A+ Sbjct: 124 TQGSLPLTPPETHTPAPDDATTLNPKYTFEAFVTGRSNQFPYAMAKAVADAPG----LPS 179 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLFI+ VGLGKTHL+ A+ + + P RV+Y+ + F F +IR+ ++ Sbjct: 180 HNPLFIYGGVGLGKTHLMHAVGHKILADDPKKRVLYIASTDFTNEFIRSIREKNMDAFRE 239 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 +ID+LLIDD+QF G+ Q EF N L D+ Q++ +DR P +++ L+ R+ S Sbjct: 240 KYYHIDVLLIDDIQFFAGQEQTQTEFFQTFNKLRDNGSQIILTSDRQPQDVKGLEDRLIS 299 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R GG V + ++E R +IL+ + + ++I +V+ ++A V ++ REL+GA Sbjct: 300 RFAGGAPVDIQPPEFETRVAILQK-----KAQSEDVDIPADVVTYIASRVDSNIRELEGA 354 Query: 375 FNQLVFRHSFAPILTAEIA-DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 +L+ S + E L + + + +++ +E I+R+V H+ ++ D+ S++ Sbjct: 355 LTRLIKYASMMRMPIDETTCVAALGNYLRGEKGRRITMEMIERIVCTHFKVTSEDIRSSK 414 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R + PRQ+AMYL MT S+P IG F +RDH+TV+HA +K++ + E+D + Sbjct: 415 RSNDIAYPRQIAMYLCHEMTEVSWPTIGGFF-NRDHSTVIHAHKKIQSLTESDPATDALI 473 Query: 494 ELLKRLI 500 + L I Sbjct: 474 KSLSIQI 480 >gi|171913561|ref|ZP_02929031.1| chromosomal replication initiation protein [Verrucomicrobium spinosum DSM 4136] Length = 526 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 145/506 (28%), Positives = 250/506 (49%), Gaps = 50/506 (9%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ + + +K ++GP ++ WFQR+ + + L VP + WI++ Y + + Sbjct: 30 EEPWSRIKALMKERIGPLMFERWFQRVGMQLLDDQRLVLLVPNLMHQYWIEDNYQQLLQV 89 Query: 96 LFQEEHSRIQGVEILV--RSVALPSVEKTASSPSITKLSPINTN---------------- 137 E + ++ +V +V+ P V K +PS + Sbjct: 90 AASEVLPGGREIDYMVAADAVSEPPVLKAVVAPSPAAVKEAQAAGAPNLVPASFDAGVAL 149 Query: 138 -ISKSPIILGKQTISP-----------------VFGSPLDSRFVFSTFIEGSSNRVALTA 179 ++ + + T P + S L++RF F+ F+ G + + Sbjct: 150 TAKEAAKKMDRVTDKPEVATGPLFESDSRFNRLLMESGLNTRFSFNAFVVGPNCTYSCAV 209 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A+++AE Y NPLF+H +VGLGKTHL+QAI + +P V Y+T+E F Sbjct: 210 AKAVAEKPGRTY-----NPLFLHGAVGLGKTHLMQAIGREILHNKPKKVVRYVTSEAFTN 264 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 + A+R + + R +D+LLIDD+QF GK Q EF H N L +S KQ+V + Sbjct: 265 EYIEALRHSKVSAFRQKYRKVDVLLIDDIQFFAGKGSTQEEFFHTFNDLFNSFKQIVLTS 324 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DR PSE+++L+ R+ SR + G++ + D E R +IL+ + D + +++ VL Sbjct: 325 DRAPSEIKNLEARLVSRFEWGMATQIESPDLETRTAILRQ-----KMVDWCVQVDDWVLS 379 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSFAP--ILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A + T+ R L+GA ++ S LT I + LL ++ + K + I+ IQ+ Sbjct: 380 FLAENIRTNVRRLEGALMRVAAHISLGNGGPLTQTIVETLLRDILEEPDAKAVTIDWIQK 439 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 +VA+H++I D+ S+RR ++ PRQ+AM+L++ +T S EIG FG RDH TV+HA Sbjct: 440 VVAEHFDIRLADMTSHRRPASIAIPRQIAMHLARELTKSSLKEIGDAFGGRDHGTVIHAC 499 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 + V ++ + +L I + Sbjct: 500 KAVSTK-ANSEEFRRTLGVLTEKIKK 524 >gi|194363779|ref|YP_002026389.1| chromosomal replication initiation protein [Stenotrophomonas maltophilia R551-3] gi|226735851|sp|B4SU11|DNAA_STRM5 RecName: Full=Chromosomal replication initiator protein DnaA gi|194346583|gb|ACF49706.1| chromosomal replication initiator protein DnaA [Stenotrophomonas maltophilia R551-3] Length = 443 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 149/468 (31%), Positives = 244/468 (52%), Gaps = 28/468 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ RL+ + P+ +W + L+ + + + L P F+ ++ YL I +L Sbjct: 2 DAWSRSLERLEAEFPPEDVHTWLKPLQA-DLRVDSLVLYAPNAFIVDQVRELYLARIREL 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 ++ + + P + ++P S + ++S P + F Sbjct: 61 LAHFAGF---SDVFLEIGSRPRPVEAQNAP----FSTPSAHVSSEPQVP--------FAG 105 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 LD+ + F+ F+EG SN++ L AA A+ NPL ++ GLGKTHL+ A Sbjct: 106 NLDNHYTFANFVEGRSNQLGLAAAFQAAQKPG----DRAHNPLLLYGGTGLGKTHLMFAA 161 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 NA + P +V+YL +E F A+++ K + +D LLIDD+QF GK Sbjct: 162 GNAMRQANPGAKVLYLRSEQFFSAMIRALQEKTMDQFKRQFQQVDALLIDDIQFFAGKDR 221 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D +Q++ DR P E+E L+ R++SRL G+SV + D+E R +I Sbjct: 222 TQEEFFHTFNALFDGKQQIILTCDRYPREVEGLEARLKSRLAWGLSVAIEPPDFETRAAI 281 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 + +++ + I ++V +A+ + ++ R+L+GA N L R +F +T E A Sbjct: 282 V-----LAKARERGAEIPDDVAFLIAKKMRSNVRDLEGALNTLTARANFTGRAITTEFAQ 336 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L L+ + + + I +IQ+ VA +Y + DLLS RR R++ RPRQVAM L+K +T Sbjct: 337 ETLRDLLRAQQ-QAISIPNIQKTVADYYGLQIKDLLSKRRTRSLARPRQVAMALTKELTE 395 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R++ ++E D L+++ + L R +SE Sbjct: 396 HSLPEIGDAFAGRDHTTVLHACRQIRTLMEADGKLREDWDKLIRKLSE 443 >gi|262193327|ref|YP_003264536.1| chromosomal replication initiator protein DnaA [Haliangium ochraceum DSM 14365] gi|262076674|gb|ACY12643.1| chromosomal replication initiator protein DnaA [Haliangium ochraceum DSM 14365] Length = 498 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 142/502 (28%), Positives = 237/502 (47%), Gaps = 51/502 (10%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + L +++ P Y W + ++ ++ L P ++++ W ++ YL + + Sbjct: 5 WAEALRSLSSKLSPQNYEMWLRPIRCRDYRDEVLVLEAPNSYVRLWFESNYLAIVLDEIK 64 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP-----------------------IN 135 E+ VE L + + A T P I+ Sbjct: 65 EQTGISYRVEFLPEPEDGAAAQPEADDVPGTDDVPAVLLGGAAASASACAQGAAPITDIS 124 Query: 136 TNISKSPIILGKQTISPVFG--------------SPLDSRFVFSTFIEGSSNRVALTAAQ 181 + S P Q G PL+ R+ F +F+ G SN++ Sbjct: 125 ASRSARPRAASGQRAGASAGGLRVVEAPPEPVPPPPLNPRYTFDSFVAGPSNQL-----A 179 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 A + + NP+FI VGLGKTHLL +I ++ +P+ R++YL+ E FM + Sbjct: 180 LAASQAAASSHPPKYNPVFICGGVGLGKTHLLHSIGHSLHGLRPDARILYLSGERFMNEY 239 Query: 242 ASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAAD 299 AIR N + R DLLLIDD+QFL GK Q EF H N+L DS +Q+V AD Sbjct: 240 ILAIRSNRMHEFRRRYREGCDLLLIDDVQFLAGKDGTQDEFFHTFNALHDSQRQIVLTAD 299 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P E+ + R+RSR Q G+ + + EMR +IL+ + E + + ++V+++ Sbjct: 300 RKPHEISDIADRLRSRFQWGLLADIEPPELEMRMAILRQ-----KAEAEHIELPDDVVLY 354 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A + + REL+GA +L S + +T A E L + T + + + E + + V Sbjct: 355 IATAIRANVRELEGALIRLSAYASLSRKPITLAFARETLEGSL-TRKREHLTTEMVIKTV 413 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A +Y + +D+ S RR + + PR VAMYL++ T S+P++GR FG + HTTV+ AV K Sbjct: 414 ANYYGLKVSDIKSARRHKAIAGPRAVAMYLARAHTKDSYPDLGRAFGGKHHTTVISAVEK 473 Query: 479 VEKMLETDITLKKEVELLKRLI 500 + E D+ L E++ ++ ++ Sbjct: 474 ITAKREEDLGLSGEIQAIESVL 495 >gi|314965762|gb|EFT09861.1| replication initiator protein DnaA [Propionibacterium acnes HL082PA2] Length = 474 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 138/475 (29%), Positives = 233/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + ++ V +W ++ + ++VP F + ++++ + Sbjct: 14 LNEAWANILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 68 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 69 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTEPSARPTTT 128 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 129 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 183 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 184 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 243 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 244 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 303 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 304 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 358 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 359 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 418 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG F +DHTTV+HA RK+ ++ + +V + I + Sbjct: 419 LCRELTDLSLPKIGAEFSGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 473 >gi|260434926|ref|ZP_05788896.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8109] gi|260412800|gb|EEX06096.1| chromosomal replication initiator protein DnaA [Synechococcus sp. WH 8109] Length = 465 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 243/474 (51%), Gaps = 19/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E ++ V L+ ++ + ++ + + + L P F ++ + L Sbjct: 1 MAQTGEELWIKVRDGLQAKLSKPTFETFIRPTGCSGFANGELKLLAPNPFASVRLREQLL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSV-ALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 TI ++ + V +L + LP AS+ + P + +P G Sbjct: 61 PTIAEMASSISGQPVQVTVLAETALPLPDATDEASAAADAASPPAAQESASAPARNGSPR 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLGK Sbjct: 121 ---RYLPGLNPRYVFGRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLGK 172 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + ++ P RV Y++ E F AIR + +D R DL+L+DD+Q Sbjct: 173 THLMQAIGHYRLEIDPRARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQ 232 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F++GK Q EF H N+L ++ +QVV A+DRPPS++ L R+ SR Q G+ + D Sbjct: 233 FIEGKEYTQEEFFHTFNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSPD 292 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 E R +IL+ + E ++++ +++ ++A T++ REL+GA + V FA I Sbjct: 293 LETRMAILQK-----KAEQERMSLPRDLIQYIAGRFTSNIRELEGALTRAVA---FASIT 344 Query: 389 TAEIADELLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E ++ ++ TG+ ++ + + V++ ++++ ++ S+ R R V + RQV MY Sbjct: 345 GLPMTVESVAPMLDPTGQGVEVTPQQVIDKVSEVFDVTAEEMCSSTRRRAVSQARQVGMY 404 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L + T S P IG FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 405 LMRQGTDLSLPRIGDNFGGKDHTTVMYAIEQVEKKLASDPQLAGQVQKVKDLLQ 458 >gi|58336355|ref|YP_192940.1| chromosomal replication initiation protein [Lactobacillus acidophilus NCFM] gi|71151800|sp|Q5FN15|DNAA_LACAC RecName: Full=Chromosomal replication initiator protein DnaA gi|58253672|gb|AAV41909.1| chromosomal replication initiator protein [Lactobacillus acidophilus NCFM] Length = 455 Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 238/471 (50%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 N E + + ++ + Y +WF+ K S + + V K + + Sbjct: 3 NFEKFWQHFNDEMRARFNEVAYNAWFKNTKPISYNQKTHELKIQVQNPVAKGYWEKNLSS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + V + + + + + +P N+ +P ++ + Sbjct: 63 QLIQSAYGYAG--------VELLPVFQISEDSDTPERIVTPEPQHNLQTTPTRAPQREFA 114 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 115 KDLK--LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAIGHQMLVERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I+++ L ++A V T+ REL+GA ++ + + Sbjct: 288 TRIAILRR-----KAEAEGLTIDDDTLDYIASQVDTNIRELEGALVKVQAYATIEKADID 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS Sbjct: 343 INLAREALVDLKLVQKNRGLQIPKIQEVVANYFQTSTAELKGKKRVRQIVIPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK+++ Sbjct: 403 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKTDADIKTAVFDLKQML 453 >gi|227543719|ref|ZP_03973768.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri CF48-3A] gi|300908784|ref|ZP_07126247.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri SD2112] gi|154705516|gb|ABS84184.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri] gi|227186287|gb|EEI66358.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri CF48-3A] gi|300894191|gb|EFK87549.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri SD2112] Length = 440 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 153/470 (32%), Positives = 247/470 (52%), Gaps = 35/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +S++ + + + P + + K S+ N + + VPT + + + Sbjct: 2 TELDSLWEAIQNSFRQDTTPVTFDTLIAPAKAISLSQNQLEIEVPTPVHRDFWRKNLNTQ 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + Q E R ++ + +KT P T S Sbjct: 62 LKEFAQHELGRNIEPHYILEGEFTYTNKKTEDDP----------------------TPSF 99 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +PL+ + F TF+ G N++A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 100 EMDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLY-----NPLFIYGGVGLGKTHL 154 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 ++AI N ++ PN RV Y+T+E F + +AIR+N L++ RN+DLLLIDD+QFL Sbjct: 155 MEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYRNLDLLLIDDIQFLA 214 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N+L D KQ+V +DR P+E+ L R+ SR + G++V + D E Sbjct: 215 NKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLTVEITPPDLET 274 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ S+ E+ ++I + L ++A + T+ REL+GA ++ + + +T Sbjct: 275 RIAILR-----SKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSGERITP 329 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + L L + ++ I IQ+ VA YNI++ D+L +RV+ +V PRQ+AMYLS+ Sbjct: 330 SLASQALKGLHRVAKN-EISIAKIQKQVADFYNITQGDILGKKRVKQIVMPRQIAMYLSR 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTVLHA+ K+E L+ D L+ ++ LK + Sbjct: 389 ELTDSSLPKIGNEFGGKDHTTVLHAIDKIEAELKKDTDLQNDITKLKAKL 438 >gi|192359033|ref|YP_001980525.1| chromosomal replication initiation protein [Cellvibrio japonicus Ueda107] gi|190685198|gb|ACE82876.1| chromosomal replication initiator protein DnaA [Cellvibrio japonicus Ueda107] Length = 534 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 145/419 (34%), Positives = 231/419 (55%), Gaps = 20/419 (4%) Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I + + +E V+ A V+ A++ + + ++ P Sbjct: 126 YIPRAAGRQDVSAPELEAAVQYAAETVVDNAANARDSGSVLRASPVFNEEPPESATLRTG 185 Query: 152 PV-------FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 V + L+S F+TF+EG SN++ L AA+ +AE Y NPLFI+ Sbjct: 186 DVEVEGGLKHSNYLNSACTFATFVEGKSNQLGLAAARQVAENPGGAY-----NPLFIYGG 240 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 VGLGKTHL+QA+ NA + R PN +VVYL +E F+ A++ N + K R++D LL Sbjct: 241 VGLGKTHLMQAVGNAMVARNPNAKVVYLHSERFVADMVKALQLNAINDFKRYYRSMDALL 300 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QF GK Q EF H NSLL+ +Q++ DR P E+ L+ R++SR G++V Sbjct: 301 IDDIQFFAGKERSQEEFFHTFNSLLEGGRQIILTCDRFPKEINGLEERLKSRFGWGLTVA 360 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + E R +IL I + E +++ E +A+ + + R+L+GA +++ + Sbjct: 361 VEPPELETRVAIL-----IKKAEQANIDLPHEAAFFIAQRIRANVRDLEGALKRVIASAN 415 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F + E+ E L L+ K++ I++IQR+V ++Y I ND++S RR R+V RPR Sbjct: 416 FTGRSIDVELVREALKDLLALQ-DKQVGIDNIQRVVCEYYKIKMNDMISKRRSRSVARPR 474 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM L+K +T S PEIG FG RDHTTVLHA RK++++ E ++++++ L R ++ Sbjct: 475 QVAMALAKELTNHSLPEIGEAFGGRDHTTVLHACRKIKELQEETADIREDMKNLLRSLT 533 Score = 82.0 bits (201), Expect = 2e-13, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 13/131 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRY 89 + V +S++ + ++ L++++ + +W + L+ + + L P F+ W+ ++ Sbjct: 1 MVVLPQSVWRLCAASLQDELPSQQFNTWIRPLQIDESAGPDQLRLLAPNRFICDWVAEKF 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS-PSITKLSPINTNISKSPIILGKQ 148 L+ I +L QG + V LP P + SP ++ +Q Sbjct: 61 LQRIRELVSHYQ---QGCMLQVAVAVLPRTGLIPPQFPPPVRQSPA--------VMPSRQ 109 Query: 149 TISPVFGSPLD 159 P F L+ Sbjct: 110 IDVPSFTEALN 120 >gi|89092264|ref|ZP_01165218.1| chromosomal replication initiator protein, DnaA [Oceanospirillum sp. MED92] gi|89083352|gb|EAR62570.1| chromosomal replication initiator protein, DnaA [Oceanospirillum sp. MED92] Length = 543 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 133/351 (37%), Positives = 213/351 (60%), Gaps = 13/351 (3%) Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F F +F++G SN++AL AA+ + + Y NPLFI+ VGLGKTHL Sbjct: 203 THQSNLNQSFTFESFVQGKSNQLALAAARQVGDNPGVSY-----NPLFIYGGVGLGKTHL 257 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ N +KR PN ++VYL +E F+ A++ N + K R++D LLIDD+QF Sbjct: 258 MHAVGNEMLKRNPNAKIVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFA 317 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G++V + + E Sbjct: 318 GKERSQEEFFHTFNALLEGGQQMILTSDRYPKEINGVEERLKSRFGWGLTVAIEPPELET 377 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + ++ ++ + ++ +A+ + ++ REL+GA +++ F +T Sbjct: 378 RVAIL-----MKKADEARVRLPDDAAFFLAQKIRSNVRELEGALKRVIANAHFTGSAITT 432 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E L L+ K++ I++IQR+VA +Y I +DLLS RR R+V RPRQVAM LSK Sbjct: 433 PFIKESLKDLLALQ-DKQVSIDNIQRVVADYYKIKVSDLLSKRRSRSVARPRQVAMSLSK 491 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK++++ E+D ++++ + L R ++ Sbjct: 492 ELTNHSLPEIGNAFGGRDHTTVLHACRKIKELRESDTDIREDYQNLLRHLT 542 Score = 87.0 bits (214), Expect = 7e-15, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 40/117 (34%), Gaps = 1/117 (0%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ L+++ Y +W + L+ + + L P F++ W+ +++L I ++ Sbjct: 4 ELWARCLHSLQDEFPAQQYNTWIRPLQVSPDSADQLVLVAPNRFVRDWVNDKFLSRIRQV 63 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + I E+ + + + + P + PV Sbjct: 64 VCDVTGDI-STEVALEVANNRGMAPRPRPAAASYARRPAPAPVSQPAFAPAPAVEPV 119 >gi|118615920|ref|YP_904252.1| chromosomal replication initiation protein [Mycobacterium ulcerans Agy99] gi|166214684|sp|A0PKB2|DNAA_MYCUA RecName: Full=Chromosomal replication initiator protein DnaA gi|118568030|gb|ABL02781.1| chromosomal replication initiator protein DnaA [Mycobacterium ulcerans Agy99] Length = 510 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 136/508 (26%), Positives = 244/508 (48%), Gaps = 54/508 (10%) Query: 37 SIFTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 +++ V + L + + P +W ++ +++ LSVP++F Sbjct: 11 AVWNAVVAELNGEPNTDGDAGTGTTLTSPLTPQQ-RAWLNLVQPLTIVEGFALLSVPSSF 69 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRS-------------------VALPSVEK 121 ++ I+ IT + + + + A P + Sbjct: 70 VQNEIERHLRTPITAALSRRLGQQIQLGVRIAPPPADDDDDSVAAAVEDPGLEASPETSQ 129 Query: 122 TASSPSITKLSPINTNISKSPIILGKQ-----TISPVFGSPLDSRFVFSTFIEGSSNRVA 176 S + P K+ T + G+ L+ R+ F TF+ G+SNR A Sbjct: 130 EVSDEIDDFGENAPKSRQSWPTHFKKRSTDADTSASADGTSLNRRYTFDTFVIGASNRFA 189 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A +IAE + Y NPLFI GLGKTHLL A N + + P +RV Y++ E Sbjct: 190 HAATLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEE 244 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVV 295 F F +++RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V Sbjct: 245 FTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIV 304 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L + ++ Sbjct: 305 ISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPDD 359 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDI 414 VL +A ++ + REL+GA ++ S + +A+ +L L+ +T ++ I Sbjct: 360 VLELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADADTMQISAATI 419 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 ++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++ Sbjct: 420 MAATVEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMY 478 Query: 475 AVRKVEKMLETDITLKKEVELLKRLISE 502 A RK+ + + V+ L I + Sbjct: 479 AQRKILSEMAERREVFDHVKELTTRIRQ 506 >gi|148543244|ref|YP_001270614.1| chromosomal replication initiation protein [Lactobacillus reuteri DSM 20016] gi|184152656|ref|YP_001840997.1| chromosomal replication initiation protein [Lactobacillus reuteri JCM 1112] gi|227364307|ref|ZP_03848400.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri MM2-3] gi|325683506|ref|ZP_08163022.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus reuteri MM4-1A] gi|167016901|sp|A5VHF3|DNAA_LACRD RecName: Full=Chromosomal replication initiator protein DnaA gi|226735822|sp|B2G4Y5|DNAA_LACRJ RecName: Full=Chromosomal replication initiator protein DnaA gi|148530278|gb|ABQ82277.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri DSM 20016] gi|183224000|dbj|BAG24517.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri JCM 1112] gi|227070620|gb|EEI08950.1| DNA-directed DNA replication initiator protein [Lactobacillus reuteri MM2-3] gi|324977856|gb|EGC14807.1| DNA-directed DNA replication initiator protein DnaA [Lactobacillus reuteri MM4-1A] Length = 440 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 153/470 (32%), Positives = 247/470 (52%), Gaps = 35/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +S++ + + + P + + K S+ N + + VPT + + + Sbjct: 2 TELDSLWEAIQNSFRQDTTPVTFDTLIAPAKAISLSQNQLEIEVPTPVHRDFWRKNLNTQ 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + Q E R ++ + +KT P T S Sbjct: 62 LKEFAQRELGRNIEPHYVLEGEFTYTNKKTEDDP----------------------TPSF 99 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +PL+ + F TF+ G N++A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 100 EMDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLY-----NPLFIYGGVGLGKTHL 154 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 ++AI N ++ PN RV Y+T+E F + +AIR+N L++ RN+DLLLIDD+QFL Sbjct: 155 MEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYRNLDLLLIDDIQFLA 214 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N+L D KQ+V +DR P+E+ L R+ SR + G++V + D E Sbjct: 215 NKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLTVEITPPDLET 274 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ S+ E+ ++I + L ++A + T+ REL+GA ++ + + +T Sbjct: 275 RIAILR-----SKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSGERITP 329 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + L L + ++ I IQ+ VA YNI++ D+L +RV+ +V PRQ+AMYLS+ Sbjct: 330 SLASQALKGLHRVAKN-EISIATIQKQVADFYNITQGDILGKKRVKQIVMPRQIAMYLSR 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTVLHA+ K+E L+ D L+ ++ LK + Sbjct: 389 ELTDSSLPKIGNEFGGKDHTTVLHAIDKIETELKKDTDLQNDITKLKAKL 438 >gi|314922677|gb|EFS86508.1| replication initiator protein DnaA [Propionibacterium acnes HL001PA1] gi|314982903|gb|EFT26995.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA3] gi|315091209|gb|EFT63185.1| replication initiator protein DnaA [Propionibacterium acnes HL110PA4] gi|315094443|gb|EFT66419.1| replication initiator protein DnaA [Propionibacterium acnes HL060PA1] gi|315105163|gb|EFT77139.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA2] gi|327328938|gb|EGE70698.1| DNA-directed DNA replication initiator protein [Propionibacterium acnes HL103PA1] Length = 474 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 138/475 (29%), Positives = 233/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + ++ V +W ++ + ++VP F + ++++ + Sbjct: 14 LNEAWANILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 68 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 69 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTEPSARPTTT 128 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ GLGK Sbjct: 129 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGLGK 183 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 184 THLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 243 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 244 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 303 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 304 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQS 358 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 359 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 418 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG F +DHTTV+HA RK+ ++ + +V + I + Sbjct: 419 LCRELTDLSLPKIGAEFSGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 473 >gi|260101878|ref|ZP_05752115.1| DNA-directed DNA replication initiator protein [Lactobacillus helveticus DSM 20075] gi|260084306|gb|EEW68426.1| DNA-directed DNA replication initiator protein [Lactobacillus helveticus DSM 20075] Length = 500 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 237/471 (50%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + E + + ++ + Y +WF+ K N + + V K + + Sbjct: 48 DIEKFWQHFNDEMRARFNEVAYNAWFKNTKPIFYNKNTHELKILVQNPVAKGYWEKNLSS 107 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + G+EIL P + ++ S ++ + + Sbjct: 108 QLIQSAYGYA----GIEIL------PVFQINENNDSPERIVTPEPRYAIQLRQEKRAPKQ 157 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 158 FTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 212 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 213 LMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFF 272 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 273 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 332 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 333 TRIAILRR-----KAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADIN 387 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ IS +L +RVR +V PRQ+AMYLS Sbjct: 388 VNLAREALVDLKLVQKNRGLQISKIQEVVANYFQISTAELKGKKRVRQIVVPRQIAMYLS 447 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK++I Sbjct: 448 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQIKTDTEIKSAVFDLKQMI 498 >gi|290968154|ref|ZP_06559699.1| chromosomal replication initiator protein DnaA [Megasphaera genomosp. type_1 str. 28L] gi|290781829|gb|EFD94412.1| chromosomal replication initiator protein DnaA [Megasphaera genomosp. type_1 str. 28L] Length = 498 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 142/497 (28%), Positives = 250/497 (50%), Gaps = 39/497 (7%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQR-LKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 E++ S++ + ++LK + P +Y +W + L +S +N + L FL+ ++ YL Sbjct: 4 EMDVTSLWIGMLAQLKQALPPTIYNTWIEPSLLPYSYENNQLILDTAQQFLRTYLSKNYL 63 Query: 91 ETITKLFQEEHSRIQGVEIL------------------VRSVALPSVEKTASSPSITKLS 132 E + + ++++ ++ P L Sbjct: 64 EDLKQAALAVTGTPTEIKLICSAKEPIPTEPAVAETIHIKDTGEPQSVAKKEPLQPLSLR 123 Query: 133 PINTNISKSPIILGKQ------TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 I +P +L K+ T + + LD+ + F FI G+SNR+A+ A ++A+ Sbjct: 124 DTANTIDSAPDLLIKEAKSLPITENTTPENQLDASYTFDNFIVGNSNRLAVAKAFAVADA 183 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 NPL+I+ + GLGKTHL+ AI + +++ P++R+ +T+E F+ F I+ Sbjct: 184 PGR----KEFNPLYIYGASGLGKTHLMHAIGHRILEKFPHMRLRSITSEDFVNEFIKCIQ 239 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFL---QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 D + + RNID+LL+DD+QFL + EF H N L KQ+V +DRPP Sbjct: 240 DKNTESFRRQYRNIDVLLVDDIQFLGRGDKDSSKEEFFHTFNKLQQDKKQIVLTSDRPPL 299 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 ++E ++ R+RSR Q G + D E R +ILK E L+I+ E + ++A Sbjct: 300 DIERMEERLRSRFQSGSVAWIDPPDLETRTAILKTW-----AEKIHLSIDNESINYIAAN 354 Query: 364 VTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKK-MRIEDIQRMVAKH 421 V+ + REL GAFN + V + +T + + +LVN E KK + ++I V + Sbjct: 355 VSENIRELSGAFNNIQVLASAEKAPVTLSMTQRAIRYLVNNQEEKKYVSTDEIINTVCQF 414 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 Y+++ D++ ++ + + PRQ+AMYL + +T ++P IG FG RDHTTV+HA K+ + Sbjct: 415 YSVTYKDIMGKKKTKDIALPRQIAMYLCRELTEHTYPHIGTVFGGRDHTTVMHACSKISQ 474 Query: 482 MLETDITLKKEVELLKR 498 + + K+ ++ LK+ Sbjct: 475 KMNENDHFKESIDKLKQ 491 >gi|157412981|ref|YP_001483847.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9215] gi|167016903|sp|A8G3T0|DNAA_PROM2 RecName: Full=Chromosomal replication initiator protein DnaA gi|157387556|gb|ABV50261.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9215] Length = 464 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 139/467 (29%), Positives = 242/467 (51%), Gaps = 19/467 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P F W++ Y +TI K Sbjct: 7 IWAEVQQSLQKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCQTIEKAA 66 Query: 98 QEEHSRIQGVEILVRS-VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 +E V + ++ S+ K I + + I ++ +P + Sbjct: 67 KEICGHDVKVVFKSETNISSDSINKENLDEQIVNHKTKLFHNNNQDISPKNRSKNP---N 123 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLGKTHL+QAI Sbjct: 124 GLNLRYVFKRFVVGPNSRLAHAAALAVAESPGR-----EFNPLFICGGVGLGKTHLMQAI 178 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + ++ P +V Y++ E F S IR + ++D R +DL+LIDD+QFL+GK Sbjct: 179 GHYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRKVDLILIDDIQFLEGKEY 238 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ + D E R +I Sbjct: 239 TQEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMTADIQPPDLETRTAI 298 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADE 395 L+ + E ++++ +++ +A T++ REL+GAF + V FA I + + Sbjct: 299 LQK-----KAEQERMSLPRDLIQFIAGRFTSNIRELEGAFTRAVA---FASITGLPMTVQ 350 Query: 396 LLSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++ ++ + + + V+ + +S ++L+S+ R + V + RQ+ MYL + T Sbjct: 351 SIAPMLDPNSVGVVVTPTQVIKKVSDFFKVSTDELISSSRRKPVSQARQIGMYLMRHGTD 410 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG +DHTTV++A+ +VEK L TD + +V+ ++ L+ Sbjct: 411 LSLPRIGDEFGGKDHTTVMYAIEQVEKKLSTDPNIASQVQKIRDLLQ 457 >gi|194467403|ref|ZP_03073390.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri 100-23] gi|194454439|gb|EDX43336.1| chromosomal replication initiator protein DnaA [Lactobacillus reuteri 100-23] Length = 440 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 153/470 (32%), Positives = 247/470 (52%), Gaps = 35/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +S++ + + + P + + K S+ N + + VPT + + + Sbjct: 2 TELDSLWEAIQNSFRQDTTPVTFDTLIAPAKAISLSQNQLEIEVPTPVHRDFWRKNLNTQ 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + Q E R ++ + +KT P T S Sbjct: 62 LKEFAQRELGRNIEPHYILEGEFTYTNKKTEDDP----------------------TPSF 99 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +PL+ + F TF+ G N++A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 100 EMDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLY-----NPLFIYGGVGLGKTHL 154 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 ++AI N ++ PN RV Y+T+E F + +AIR+N L++ RN+DLLLIDD+QFL Sbjct: 155 MEAIGNHMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYRNLDLLLIDDIQFLA 214 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N+L D KQ+V +DR P+E+ L R+ SR + G++V + D E Sbjct: 215 NKEGTQLEFFNTFNALHDRKKQIVMTSDRIPNEIPELQDRLVSRFRWGLTVEITPPDLET 274 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ S+ E+ ++I + L ++A + T+ REL+GA ++ + + +T Sbjct: 275 RIAILR-----SKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFANLSGERITP 329 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + L L + ++ I IQ+ VA YNI++ D+L +RV+ +V PRQ+AMYLS+ Sbjct: 330 SLASQALKGLHRVAKN-EISIATIQKQVADFYNITQGDILGKKRVKQIVMPRQIAMYLSR 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IG FG +DHTTVLHA+ K+E L+ D L+ ++ LK + Sbjct: 389 ELTDSSLPKIGNEFGGKDHTTVLHAIDKIEAELKKDTDLQNDITKLKAKL 438 >gi|314917480|gb|EFS81311.1| replication initiator protein DnaA [Propionibacterium acnes HL050PA1] Length = 474 Score = 424 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 137/475 (28%), Positives = 233/475 (49%), Gaps = 22/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T + ++ V +W ++ + ++VP F + ++++ + Sbjct: 14 LNEAWTNILTK----VSKPN-RAWLSNTTPVTMHSSTAMVAVPNEFARDRLESKMRYELE 68 Query: 95 KLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 +L + + + I + + P E + P T P T Sbjct: 69 ELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPPAQFVPKVTVGVTKPSARPTTT 128 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 I G+ L+ ++ F +F+ G+SNR A AA ++AE Y NPL I+ G+GK Sbjct: 129 IDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPGKSY-----NPLLIYGGSGVGK 183 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 T LL I + N++V Y++ E F +AI N + S R++D+LL+DD+Q Sbjct: 184 TPLLHGIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTNRTTEFRRSYRDVDVLLVDDIQ 243 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FLQ K Q EF H N+L ++ KQ+V +DRPP LE+L+PR+RSR + G+ + D Sbjct: 244 FLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEALEPRLRSRFEWGLLTDIQPPD 303 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-I 387 E R +IL+ ++A + + + +VL +A + T+ REL+GA ++ S Sbjct: 304 LETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTNIRELEGALIRVTAFASLNQQP 358 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A+ +L L+ G + E I A +++IS +DLL R +T+V RQ+AMY Sbjct: 359 VDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISADDLLGTSRAQTLVTARQIAMY 418 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T S P+IG FG +DHTTV+HA RK+ ++ + +V + I + Sbjct: 419 LCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQRQIFNQVSEITNRIKQ 473 >gi|254363202|ref|ZP_04979251.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica PHL213] gi|153095096|gb|EDN75647.1| chromosomal replication initiator protein DnaA [Mannheimia haemolytica PHL213] Length = 445 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 149/470 (31%), Positives = 252/470 (53%), Gaps = 31/470 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S+++ + L+ +V P Y++W + L+ S + + L F++ W+K+++L IT+ Sbjct: 2 SSLWSDCLNHLQTKVSPTDYSTWLRPLQA-SSENGELTLYAQNQFVENWVKDKFLSEITE 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + ++ + + ++ P+ + K+SP N S G F Sbjct: 61 LAR-FLAKNDNLVVTLKVGIKPTEQ--------PKVSPNLKNESSEFSNTG-------FK 104 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ F F++G SN++A AQ + + + NPL +A GLGKTHLL A Sbjct: 105 TGLNPNQTFDNFVQGRSNQLAKLVAQQVVDNLGESH----CNPLSFYAGTGLGKTHLLHA 160 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQG 273 I N +KR P RV+Y+ E F AI +N A +K R++D+L+IDD+QFL Sbjct: 161 IGNELVKRTPGTRVLYIHLERFYRDIIKAINSSNNDAEKIKKFYRSLDVLMIDDIQFLAN 220 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +Q EF HLLN+L + KQ++ +D P ++ +D I+SRL GG+S + + E R Sbjct: 221 KPKVQEEFLHLLNALFEQRKQIILTSDVLPKNIDKIDTAIKSRLSGGISATIEPPELETR 280 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + + ++ E+ + + + T+ REL+GA N+++ +T + Sbjct: 281 VAILRQ-----KALERGADLQEDAAYLMGQKLRTNVRELEGALNRVIAWQKLTLRPITVD 335 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L L + + IE+IQR+VA++Y I D+ S R R++ RPRQ+AM L+K Sbjct: 336 AVRETLQDLFAS-FDYLITIENIQRIVAEYYGIKVADIKSKSRARSIARPRQMAMALAKE 394 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIGR FG RDHTTV+HA + + ++ +T+ ++++ L R +S Sbjct: 395 LTNHSLPEIGREFGGRDHTTVMHACKTINELRDTESGIQEDYIHLTRKLS 444 >gi|332991509|gb|AEF01564.1| Chromosomal replication initiator protein dnaA [Alteromonas sp. SN2] Length = 557 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 216/384 (56%), Gaps = 20/384 (5%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 ++ ++ + + +P+ + P + S ++ + F F+EG SN++A A Sbjct: 191 DQRSAGSNTMRSAPLQPKVIPIPEAAKHK-------SNINPTYQFDNFVEGKSNQLARAA 243 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A +A Y NPLFI+ GLGKTHLL A+ N + N ++VY+ +E F+ Sbjct: 244 ATQVANNPGSSY-----NPLFIYGGTGLGKTHLLHAVGNGIVANNENAKIVYMHSERFVQ 298 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAA 298 A+++N + K R++D LLIDD+QF K Q EF H N+LL+ +Q++ + Sbjct: 299 DMVKALQNNAIEDFKRFYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTS 358 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DR P E++ ++ R++SR G+++ + + E R +IL + + + ++++ EV Sbjct: 359 DRYPKEIDGVEDRLKSRFGWGLTIAIEPPELETRVAIL-----MRKAAENRIHLPNEVAF 413 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A+ + ++ REL+GA N+++ +F +T + E L L+ K + +++IQ+ Sbjct: 414 FIAKRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQ-EKLVTVDNIQKT 472 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 VA +Y I D+LS RR R+V RPRQVAM L+K +T S PE+G FG RDHTTVLHA R Sbjct: 473 VADYYKIKVADILSKRRSRSVARPRQVAMALAKELTNHSLPELGNAFGGRDHTTVLHACR 532 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+ ++ E +K++ + L R +S Sbjct: 533 KITQLREESHDIKEDYKNLIRTLS 556 Score = 84.7 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ RL+ ++ ++ W + L +V L P F+ W++++YL+ IT L Sbjct: 2 SLWNQCLERLRQELPTQQFSMWIRPLVPQE-EEGVVALFAPNRFILDWVRDKYLDNITGL 60 Query: 97 FQEEHS 102 +E Sbjct: 61 LREFAG 66 >gi|114778882|ref|ZP_01453679.1| chromosomal replication initiator protein dnaA [Mariprofundus ferrooxydans PV-1] gi|114550851|gb|EAU53417.1| chromosomal replication initiator protein dnaA [Mariprofundus ferrooxydans PV-1] Length = 469 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 150/469 (31%), Positives = 237/469 (50%), Gaps = 35/469 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++ +S RLK+++ + +W + + + + ++VP+ F +KN Y I Sbjct: 32 NTSPLWQQISDRLKDEISVSRFDAWIRPVSA-TQNGQKLTIAVPSRFFMEGLKNSYAARI 90 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +L E + V + + + P L + Sbjct: 91 AELAAEVTGTDIDLSYQVDTSLATQGDPEPAMPDEADLL--------------------L 130 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 +D RF F FI GS N AAQ++AE Y NPL+++ VGLGKTHL+ Sbjct: 131 VDGYIDPRFTFENFIVGSGNEFCHAAAQAVAEKPGAIY-----NPLYLYGGVGLGKTHLI 185 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ANA I + N R+ Y T E F AIR+ N ++ R +D+L+IDD+QF+ G Sbjct: 186 NAVANALISKN-NYRIAYRTGERFTNELIQAIRNGSTDNFRNQYRQVDVLIIDDIQFIAG 244 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + KQ++ +DR P +L +L R+RSR G+ + D E R Sbjct: 245 KDRTQEEFFHTFNALYEIKKQIILTSDRSPRDLTNLMERLRSRFNWGLVADIQPPDLETR 304 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL S+ E ++++ +V +A +T + REL+GA +L + + Sbjct: 305 LAIL-----SSKAELAGVHMDRDVANLLATRITNNVRELEGALTRLTAHATLTGRTIDVT 359 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A +L L++ + + +EDIQ+ +A +YNI+ ++ S++R RTV PRQVAMY K Sbjct: 360 FARHVLRDLLHEEI-RAISVEDIQKQIAAYYNINIREMSSSKRSRTVAFPRQVAMYACKE 418 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S PEIG RFG +DHTT+L+AVRK+ KM + D +EV + + Sbjct: 419 LTTMSLPEIGARFGGKDHTTILYAVRKIAKMRDEDEDFDEEVSRIIAQL 467 >gi|126695929|ref|YP_001090815.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9301] gi|166214688|sp|A3PBT9|DNAA_PROM0 RecName: Full=Chromosomal replication initiator protein DnaA gi|126542972|gb|ABO17214.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9301] Length = 464 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 139/466 (29%), Positives = 239/466 (51%), Gaps = 17/466 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V LK + + +W + KF+ + ++ L P F W++ Y +TI K Sbjct: 7 IWAEVQQSLKKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCQTIEKAA 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +E V+++ +S S + T ++ T + + Sbjct: 67 KEICG--HDVKVVFKSEKNISRDSTNKENLDDQIVNHKTKSFPNNSQEISSKNRSKNPNG 124 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLGKTHL+QAI Sbjct: 125 LNLRYVFKRFVVGPNSRLAHAAALAVAESPGR-----EFNPLFICGGVGLGKTHLMQAIG 179 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + ++ P +V Y++ E F S IR + ++D RN+DL+LIDD+QFL+GK Sbjct: 180 HYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNVDLILIDDIQFLEGKEYT 239 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ + D E R +IL Sbjct: 240 QEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMTADIQPPDLETRTAIL 299 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + E +++ +++ +A T++ REL+GAF + V FA I + + Sbjct: 300 QK-----KAEQESMSLPRDLIQFIAGRFTSNIRELEGAFTRAVA---FASITGLPMTVQS 351 Query: 397 LSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ ++ + + + V+ + +S ++L+S+ R + V + RQ+ MYL + T Sbjct: 352 IAPMLDPNSVGVVVSPKQVINKVSDFFKVSTDELISSSRRKPVSQARQIGMYLMRHGTDL 411 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG +DHTTV++A+ +VEK L D + +V+ ++ L+ Sbjct: 412 SLPRIGDEFGGKDHTTVMYAIEQVEKKLSIDPNIASQVQKIRDLLQ 457 >gi|295394846|ref|ZP_06805059.1| ATPase involved in DNA replication initiation [Brevibacterium mcbrellneri ATCC 49030] gi|294972179|gb|EFG48041.1| ATPase involved in DNA replication initiation [Brevibacterium mcbrellneri ATCC 49030] Length = 476 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 142/478 (29%), Positives = 243/478 (50%), Gaps = 21/478 (4%) Query: 34 NCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N + I+T V ++ +Q+ P + + +++ ++V +SVP + + + + Sbjct: 7 NLQQIWTDVVEGMRTDSQLQPRL-KGFLGLAAPKAIVEDLVVISVPNDLTRHTFERELRQ 65 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + F E R + S ++ + A P+ T P ++ Sbjct: 66 PLGQAFSEALGRPVSFAFALDS-SMNTDPTPAEEPATTSAPEPQIATPAQPTVVAPTESP 124 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V S L+ ++ F +F+ G+SNR A AA ++AE + Y NPLFI+ GLGKTH Sbjct: 125 EVGSSDLNPKYTFDSFVIGASNRFAHAAAFAVAESPAKAY-----NPLFIYGDSGLGKTH 179 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLID 266 LL A+ + +++ P +RV Y+++E F+ F + + N + R +D+L+ID Sbjct: 180 LLHAVGHYALQLYPKIRVRYVSSEEFVNDFINTVGSQVTSNTLRPAFQRRYREVDILMID 239 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFLQGK EF H N+L KQV+ +D+PP L+ + R+RSR + G+ + Sbjct: 240 DIQFLQGKDATVEEFFHTFNALHAENKQVIITSDQPPKMLKGFEERLRSRFESGLLTDVQ 299 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E RF+IL+N + + L + +EVL +A V+++ REL+GA ++ + Sbjct: 300 PPDLETRFAILRN-----KAANENLAVPDEVLEFIASRVSSNIRELEGALIRVTAFSNLN 354 Query: 386 -PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 ++ +A +L + ET ++ DI A+++N+S DL + R RT+ RQ+ Sbjct: 355 EQVIDVGLAQTVLKDFITHDETPEITATDIMGQTAQYFNLSIEDLQGSSRSRTLTTARQI 414 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL + +T S P+IG FG RDHTTV+HA RK+ + + +V L I + Sbjct: 415 AMYLCRELTDLSLPKIGEAFGGRDHTTVMHANRKIGTQMAERRAIYTQVTELTNRIKQ 472 >gi|224027038|ref|ZP_03645404.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM 18228] gi|224020274|gb|EEF78272.1| hypothetical protein BACCOPRO_03797 [Bacteroides coprophilus DSM 18228] Length = 469 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 130/467 (27%), Positives = 236/467 (50%), Gaps = 19/467 (4%) Query: 38 IFTIVSSRLKNQVG-PDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ + +K+ + + +WF+ + + + + VP+ F +++ +Y+ + Sbjct: 10 LWNRCLNFIKDNINNARAFETWFEPIVPLKYENKALTIGVPSPFFYEYLEEKYVGLLRAA 69 Query: 97 FQEEHSRIQGVEILVRSVALP----SVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +E + + + ++E T S ++ +P++ N +K+P L + Sbjct: 70 IYKEIGEGTELMYSILTDKTNHITVNMEGTKRSSALPPQAPVH-NANKAPNPL-QAAAPQ 127 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ + F FI+G+SN + T A+++A+ + NPLF++ G+GKTHL Sbjct: 128 DLDPHLNPNYNFENFIKGTSNEFSRTVAETVAQNPAR-----TFNPLFLYGPSGVGKTHL 182 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + AI + P RV+Y++A F ++ ++R N + + ID+L+IDD+Q Sbjct: 183 INAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIIDDIQEFA 242 Query: 273 G-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L D E+ Sbjct: 243 GVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEDRLLTRFKWGLVAELEKPDIEL 302 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTA 390 R +IL+N++ L I E V+ ++A V S REL+G N L+ + + Sbjct: 303 RKNILRNKIRRD-----GLTIPESVICYIAENVNESVRELEGIVNSLLAQSILLKREINL 357 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A ++ V E K + I+DI V HY I + + + R R VV+ RQVAMYL+K Sbjct: 358 DLAQRIVRKAVRCAEVKAVTIDDIIEKVCAHYKIDTSAIHTKTRKREVVQVRQVAMYLAK 417 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 T S +IG+ G++DH TVLHA + V+ LE D K E+E ++ Sbjct: 418 KHTETSSSKIGQLIGNKDHATVLHACKTVKDQLEVDKEFKAEIEEIE 464 >gi|111219506|ref|YP_710300.1| chromosomal replication initiator protein [Frankia alni ACN14a] gi|111147038|emb|CAJ58685.1| Chromosomal replication initiator protein [Frankia alni ACN14a] Length = 534 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 141/516 (27%), Positives = 236/516 (45%), Gaps = 60/516 (11%) Query: 34 NCESIFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + ++++ + + + + +W + + ++ + L+ P F K + +R Sbjct: 23 DLAAVWSQAVAGVADGTLSAQQ-RAWLRLTRPLGLVQDTALLAAPNEFTKELLDSRLRPF 81 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSV--------------------------------- 119 ++ + R V + V + P Sbjct: 82 LSTALSTAYGREIRVAVTVEHLPDPEPMSGPIRIVRPGEGDGGAPRDAGGSRGRGSGGAA 141 Query: 120 ------EKTASSPSITKLSPINTNISKSPIILGK---QTISPVFGSP----LDSRFVFST 166 A +P +L ++ S P+ +G + +P+ P L+ R+VF T Sbjct: 142 ADTGRRAGEAGAPVNGELPFPDSAESTPPMRVGAGLGRDAAPLETEPAQARLNPRYVFET 201 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G SNR A V NPLFI+ GLGKTHLL AI + ++K PN Sbjct: 202 FVIGDSNRFPHAA-----AVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYALKLYPN 256 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 RV Y+++E F F ++IRD+ + R+ID+LL+DD+QFL+ K Q EF H N Sbjct: 257 TRVKYVSSEEFTNDFINSIRDDRQQAFQRRYRDIDVLLVDDIQFLENKERTQEEFFHTFN 316 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 L D KQ+V ++DR P +L +L+ R+RSR + G+ + D E R +IL + A + Sbjct: 317 VLHDGEKQIVISSDRSPKQLSALEDRLRSRFEWGLMTDITPPDLETRIAILSKKAATER- 375 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTG 404 L + +VL ++A + + REL+GA ++ S + +A+ +L L+ Sbjct: 376 ----LPVPPDVLEYIATHIERNIRELEGALIRVAAFASLNKSHVDRTLAEIVLRDLIPDA 431 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 + I A ++ +S +DL R R +V RQ+AMYL + +T S P+IG+ F Sbjct: 432 GNPDITAAAIMNATAAYFGVSMDDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQHF 491 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 G RDHTTV+HA RK+ ++ + +V L I Sbjct: 492 GGRDHTTVMHADRKIRGLMAERRAIYNQVTELTNRI 527 >gi|78778950|ref|YP_397062.1| chromosomal replication initiation protein [Prochlorococcus marinus str. MIT 9312] gi|123755112|sp|Q31BW9|DNAA_PROM9 RecName: Full=Chromosomal replication initiator protein DnaA gi|78712449|gb|ABB49626.1| chromosomal replication initiator protein DnaA [Prochlorococcus marinus str. MIT 9312] Length = 464 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 140/466 (30%), Positives = 238/466 (51%), Gaps = 17/466 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ + + +W + KF+ + ++ L P F W++ Y ETI K Sbjct: 7 IWAEVQKSLQKTLSKPSFETWIRPAKFNCFENGLLTLIAPNTFSSDWLRKNYCETIEKTA 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +E V+++ +S + T K T + + Sbjct: 67 KEICG--YDVKVIFKSETNINSYLTNKENLDEKKVDHKTKSFSNNSQDISSKNRSKKPNG 124 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ R+VF F+ G ++R+A AA ++AE NPLFI VGLGKTHL+QAI Sbjct: 125 LNLRYVFKRFVVGPNSRLAHAAALAVAESPGR-----EFNPLFICGGVGLGKTHLMQAIG 179 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + ++ P +V Y++ E F S IR + ++D RN+DL+LIDD+QFL+GK Sbjct: 180 HYRVEIDPEAKVKYVSTETFTNDVISGIRRDGMTAIRDKYRNVDLILIDDIQFLEGKEYT 239 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L +S Q+V A+DRPP++L + R+ SR G++ + D E R +IL Sbjct: 240 QEEFFHTFNALHESGSQIVIASDRPPNQLSGIQERLISRFSMGMTADIQPPDLETRTAIL 299 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 + + E ++N+ +++ +A T++ REL+GAF + V FA I + + Sbjct: 300 QK-----KAEQERMNLPRDLIQFIAGRFTSNIRELEGAFTRAVA---FASITGLPMTVQS 351 Query: 397 LSHLV-NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ ++ + + + V+ + +S ++L+S+ R + V + RQ+ MYL + T Sbjct: 352 IAPMLDPNSVGVVVTPKQVINKVSDFFKVSTDELISSSRRKPVSQARQIGMYLMRQGTDL 411 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG +DHTTV++A+ +VEK L D + +V+ ++ L+ Sbjct: 412 SLPRIGDEFGGKDHTTVMYAIEQVEKKLSIDPNIASQVQKIRDLLQ 457 >gi|332830222|gb|EGK02850.1| chromosomal replication initiator protein DnaA [Dysgonomonas gadei ATCC BAA-286] Length = 467 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 239/472 (50%), Gaps = 14/472 (2%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + ++ + +++ + + +WF + S + + + VP+ F ++++++++ + Sbjct: 5 STQKLWANCLTVIQDNIPEAAFKTWFLPIVPLSYENKVFTIQVPSQFFYEYLEDKFVDLL 64 Query: 94 TKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 E R I IL+ + V+ + ++ + +K P ++ ++ Sbjct: 65 KTTLHREIGRDTILQYRILMENTTNTVVDYRGDAKTLPVDKGSVKSTNKVPNPF-QKVVA 123 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 F S L+ ++ F F EG SN++A TA ++I + NPLF+H + G+GKTH Sbjct: 124 DDFDSQLNLKYTFDNFFEGESNKLARTAGETITKNPGK----TAFNPLFLHGTSGVGKTH 179 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L AI + P RV+Y++A F ++A A R N + + + ID+L+IDD+ L Sbjct: 180 LCHAIGTRIKELYPEKRVLYVSAHLFKIQYADAGRYNTTNDFINFYQGIDVLIIDDIHEL 239 Query: 272 QG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 G + Q+ H+ N L + KQ++ +D+ PSEL+ ++ R+ +R + G++ + D Sbjct: 240 AGIERTQNTLFHIFNHLHQNNKQLILTSDKSPSELQGVEERLLTRFRWGLTTKIDHPDKG 299 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 +R IL+N + L+I E+V+ ++A VT + R+L+G ++ + + Sbjct: 300 LRLKILQN-----KILHDGLSIPEDVVDYIAENVTDNARDLEGIIVSIMAHSLVYNKEID 354 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A ++ + E KK+ I I+ +V YNI + + R R +V+ RQV MYLS Sbjct: 355 LPLARRVIGQAIKKIEAKKITISAIESVVCDFYNIKSELIHTASRKRQIVQARQVTMYLS 414 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K T S +IG G ++H TVLHA + V++ +E D + E+ +++ I Sbjct: 415 KSYTEMSLAQIGSLIGKKNHATVLHACKTVKEQMEVDKVFRDEIAEIEKKIK 466 >gi|304439078|ref|ZP_07398997.1| DNA-directed DNA replication initiator protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372437|gb|EFM26024.1| DNA-directed DNA replication initiator protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 447 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 138/477 (28%), Positives = 247/477 (51%), Gaps = 35/477 (7%) Query: 31 LEVNCESIFTIVSSRLKNQV-GPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKN 87 +E + I+ L+ +++WFQR+ + +N ++VP F+K ++ N Sbjct: 1 MEQDISKIWENFMKLLRQNSRSEISFSTWFQRMVPKEIDKNNNKFIITVPNEFIKNYLSN 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 L KL + G+ + +A + ++S P Sbjct: 61 SDLNM--KLLSKCMYEASGIAYEIEILAGDDEDPSSSLPIEDAFE--------------- 103 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 S L+ +++F FI G SN A A+ + AE NPLFI+ VGL Sbjct: 104 -------KSRLNPKYIFENFIVGKSNEFAHAASLAAAES-YENPEAAHSNPLFIYGGVGL 155 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI + +++ + +V+Y+T+E FM +I++ + R++DLLLIDD Sbjct: 156 GKTHLMQAIGHFVLQQDISKKVLYVTSEQFMNELIDSIKNGRNEEFRRKYRSVDLLLIDD 215 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF+ K Q EF H N+L + KQ+V +D+PP +++SL R+ SR G+ V +G Sbjct: 216 IQFIADKESTQEEFFHTFNALHGANKQIVLTSDKPPKDIKSLKERLVSRFAWGLVVDIGP 275 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ ++ + ++ E V+ ++A V ++ REL+GA ++ Sbjct: 276 PDLETRIAILR-----AKSDSEGFDVPENVINYIAENVRSNIRELEGALTRVKAFSKLTK 330 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++T +IA + + + + + + I+ +++K+YNI+ +D+LS++R + PRQ+A Sbjct: 331 GVITEDIAKQAIKDIYKVKTVRVVDAKRIKEVISKNYNITIDDILSSKRTANIAFPRQIA 390 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYL++ +T S P IG+ FG RDHTTV++A+ K++ ++ D E++ L + I + Sbjct: 391 MYLTRTLTDLSLPMIGQEFGGRDHTTVMYAINKIDTRIKKDAEFSIEIQGLIKEIKK 447 >gi|84497194|ref|ZP_00996016.1| chromosomal replication initiator protein [Janibacter sp. HTCC2649] gi|84382082|gb|EAP97964.1| chromosomal replication initiator protein [Janibacter sp. HTCC2649] Length = 516 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 144/522 (27%), Positives = 241/522 (46%), Gaps = 65/522 (12%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ L + P ++ K +L ++VP +F K ++ R + +T+ Sbjct: 2 DQIWRTTLDALDSDGIPVQQRAFLSLAKLVGLLDETALIAVPNDFTKDIVETRLRDRVTE 61 Query: 96 LFQEEHSRIQGVEILVR------SVALPSVEKTASSPSITKLSPINTNISKSP------- 142 + + + V V +P+ T ++ T I P Sbjct: 62 TLSSQLGHDVRLAVTVDHSLADVPVTIPADTTTVDGAGADQVPRTATTIGLEPGPADADG 121 Query: 143 ----------------------------------------IILGKQTISPVFGSPLDSRF 162 G V + L+ ++ Sbjct: 122 RRAKRRAELDGIALVEDDEGEDDSRNNGAIGRTRSPGALRPRPGATVPEQVELTRLNPKY 181 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G+SNR A AA ++AE + Y NPLFI+ GLGKTHLL AI + + Sbjct: 182 TFDTFVIGASNRFANAAALAVAETPAKAY-----NPLFIYGESGLGKTHLLHAIGHYARN 236 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFC 281 P+++V Y+ +E F F ++IRD+ A N + R++D+LLIDD+QFLQGK Q EF Sbjct: 237 LYPHVKVRYVNSEEFTNDFINSIRDDKAANFQRRYRDVDVLLIDDIQFLQGKVQTQEEFF 296 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N+L ++ KQVV +D PP L + R+RSR + G+ + D E R +IL+ + A Sbjct: 297 HTFNTLHNANKQVVITSDLPPKLLSGFEERMRSRFEWGLMTDVQPPDLETRIAILRKKAA 356 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHL 400 + L++ ++VL +A ++T+ REL+GA ++ S + +A+ +L L Sbjct: 357 QEK-----LSVPDDVLEFIASRISTNIRELEGALIRVTAFASLNRQPVDISLAEIVLKDL 411 Query: 401 VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 + ++ I A ++ ++ DL R R +V RQ+AMYL + +T S P+I Sbjct: 412 IPHDSANQITSATIMAQTAAYFGLTLEDLQGQSRSRVLVTARQIAMYLCRELTDLSLPKI 471 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G++FG RDHTTV+HA +K+ +++ + +V L I + Sbjct: 472 GQQFGGRDHTTVMHADKKIRQLMAERRAIYNQVTELTNRIKQ 513 >gi|257464820|ref|ZP_05629191.1| chromosomal replication initiation protein [Actinobacillus minor 202] gi|257450480|gb|EEV24523.1| chromosomal replication initiation protein [Actinobacillus minor 202] Length = 446 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 159/470 (33%), Positives = 249/470 (52%), Gaps = 30/470 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S++T S LK +V Y W + L+ S + + L F++ +K+ +L I Sbjct: 2 SSLWTDCLSHLKTKVSDTEYNIWLRPLQP-SFSNGELTLYAQNPFVEKHVKDHFLAEIID 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + SR + + R PS + S +P + G+ +P F Sbjct: 61 LAR-FLSRNDQLVVSTRIGIRPSEQAERS--------------VSAPAVSGENVGTPTFR 105 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S +D F F++G SN++A AQ + + NP ++AS GLGKTHLL A Sbjct: 106 SGIDPTQRFDNFVQGRSNQLAKAVAQQVVSDLGESH----CNPFSLYASTGLGKTHLLHA 161 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--ALNLKDSLRNIDLLLIDDMQFLQG 273 I NA K+ P+LRV+Y+ +E F AI N A LK R++D+L+IDD+QFL Sbjct: 162 IGNALQKKDPSLRVLYIHSERFYRDILKAINTNSNEADKLKKFYRSLDVLMIDDIQFLAD 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +Q EF HL N+L + KQ+V ++ P +E +D I+SRL G+S + + E R Sbjct: 222 KPKVQEEFLHLFNALFEQKKQIVLTSNVFPKNIERIDDAIKSRLSWGISSTIEPPELETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + E+ +I+EE + + + T REL+GA N+++ +T + Sbjct: 282 VAILRK-----KAEERGADISEEATYLMGQKLRTHVRELEGALNRVIAWQKLTHRPITVD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L + + + + IE+IQR+VA++YNI D+ S R RT+ RPRQ+AM L+K Sbjct: 337 AVRETLRDMFAS-YDQLITIENIQRVVAEYYNIKLTDIKSKSRTRTIARPRQMAMALAKE 395 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIGR FG RDHTTV+HA + + ++ ET+ T++++ L R +S Sbjct: 396 LTNHSLPEIGREFGGRDHTTVMHACKTISELRETESTIQEDYTNLTRKLS 445 >gi|229818503|ref|YP_002880029.1| chromosomal replication initiator protein DnaA [Beutenbergia cavernae DSM 12333] gi|229564416|gb|ACQ78267.1| chromosomal replication initiator protein DnaA [Beutenbergia cavernae DSM 12333] Length = 489 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 132/451 (29%), Positives = 225/451 (49%), Gaps = 20/451 (4%) Query: 62 LKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEK 121 + ++ + L+VP++F K +++ R E I + R + V +V Sbjct: 45 TRPLGLIDETLLLAVPSDFAKEFLETRAREQIMRALAASFGRTLRFAVTVDPSLQDAVPA 104 Query: 122 TASSPS-----ITKLSPINTNI---SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 +S+ PI + ++ + + + G+ L++ + F TF+ GSSN Sbjct: 105 ESSAEEMRDAEAAAPEPIERSARAQQRADALASQARTAGSDGARLNATYTFDTFVIGSSN 164 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A NPLFI+ GLGKTHLL AI + + + P + V Y+ Sbjct: 165 RF-----AHAAATAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQRLYPGIAVRYVN 219 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAK 292 +E F F ++IRD+ A + R++++LL+DD+QFLQGK EF H N+L ++ K Sbjct: 220 SEEFTNDFINSIRDDKAEAFQRRYRSVEVLLVDDIQFLQGKEQTMEEFFHTFNTLHNANK 279 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QVV +D P LE R+RSR + G+ + D E R +IL+ + +L+ Sbjct: 280 QVVITSDVAPKYLEGFADRMRSRFEWGLITDIQPPDLETRIAILRK-----KAGSERLSA 334 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRI 411 ++VL ++A ++T+ REL+GA ++ + + +A+ +L L+ +T ++ Sbjct: 335 PDDVLEYIASRISTNIRELEGALIRVTAFANLNEQQVDLALAEMVLKDLITDDDTTEITP 394 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 I A ++ +S + L S R R +V RQ+AMYL + +T S P+IG+ FG RDHTT Sbjct: 395 AVIMAQTANYFGVSIDALCSADRTRVLVNARQIAMYLCRELTDLSLPKIGQIFGGRDHTT 454 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLISE 502 V+HA RK+ +++ + +V L I + Sbjct: 455 VMHANRKIRELMAKQRSTFNQVTELTNRIKQ 485 >gi|288916710|ref|ZP_06411085.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f] gi|288351965|gb|EFC86167.1| chromosomal replication initiator protein DnaA [Frankia sp. EUN1f] Length = 515 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 137/496 (27%), Positives = 230/496 (46%), Gaps = 40/496 (8%) Query: 34 NCESIFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++ + + + + +W + + ++ + L+ P F K + +R Sbjct: 24 DLSAVWEQAVAGVADGALSAQQ-RAWLRLTRPLGLVQDTALLAAPNEFTKDLLDSRLRPF 82 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSV----------------------EKTASSPSITK 130 ++ + R V + V P TA + Sbjct: 83 LSTALSRAYGREIRVAVTVEHTPDPEPMTGPLIRPATTADLTQHLMGGGSGTALNEGAES 142 Query: 131 LSPINTNISK----SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 + + + SP + + P + L+ R++F TF+ G SNR A V Sbjct: 143 VDGVRVDGPPPGRVSPGLGRDPSPRPSEPARLNPRYLFETFVIGDSNRFPHAA-----AV 197 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 NPLFI+ GLGKTHLL AI + ++K P R+ Y++ E F F ++IR Sbjct: 198 AVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYTVKLYPESRIKYVSMEEFTNDFIASIR 257 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 D+ L + R+ID+LL+DD+QFL+ K Q EF H N L D+ KQ+V ++DR P +L Sbjct: 258 DDRQLAFQRRYRDIDVLLVDDIQFLENKERTQEEFFHTFNVLHDTEKQIVISSDRSPKQL 317 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 +L+ R+RSR + G+ + D E R +IL + A + L + +VL ++A + Sbjct: 318 AALEDRLRSRFEWGLITDVTPPDLETRIAILSKKAATER-----LPVPPDVLEYIATHIE 372 Query: 366 TSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 + REL+GA ++ S + +A+ +L L+ ++ I A ++ I Sbjct: 373 RNIRELEGALIRVAAFASLNKSHVDRTLAEIVLRDLIPDAANPEITAAAIMNATAAYFGI 432 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 S +DL R R +V RQ+AMYL + +T S P+IG+ FG RDHTTV+HA RK+ ++ Sbjct: 433 SMDDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQHFGGRDHTTVMHADRKIRGLMA 492 Query: 485 TDITLKKEVELLKRLI 500 + +V L I Sbjct: 493 ERRAIYNQVTELTNRI 508 >gi|94308946|ref|YP_582156.1| chromosomal replication initiation protein [Cupriavidus metallidurans CH34] gi|123384106|sp|Q1LSI9|DNAA_RALME RecName: Full=Chromosomal replication initiator protein DnaA gi|93352798|gb|ABF06887.1| chromosomal replication initiator protein DnaA [Cupriavidus metallidurans CH34] Length = 579 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 125/385 (32%), Positives = 207/385 (53%), Gaps = 13/385 (3%) Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALT 178 V + + + + + + +P +Q+ + S L+ F F+ G +N++A Sbjct: 205 VAQMDPAEASARSYRVPSPQPAAPAGAQQQSDTVHERSRLNPILTFDNFVTGKANQLARA 264 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +A Y NPL+++ VGLGKTHL+ AI N + P R+ Y+ AE ++ Sbjct: 265 AAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIRYIHAEQYV 319 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAA 297 A + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ Sbjct: 320 SDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIIT 379 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +D P E+ +D R+ SR G++V + + EMR +IL + + +++ EEV Sbjct: 380 SDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MKKAAAENVSVPEEVA 434 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 VA+ + ++ REL+GA +++ +F +T ++ E L L+ T + +++ +E+IQ+ Sbjct: 435 FFVAKHLRSNVRELEGALRKILAFSNFHGKDITIDVTREALKDLL-TVQNRQISVENIQK 493 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 A YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAV Sbjct: 494 TCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAV 553 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 RK+ + D L E+ +L++ + Sbjct: 554 RKIAEERSKDAQLNHELHVLEQTLK 578 Score = 75.1 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 46/114 (40%), Gaps = 6/114 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETI 93 + + +++L+ ++ P + +W + L + + + ++ P F W+K+++ I Sbjct: 2 QDFWQAAAAQLERELTPQQFKTWIKPLAPVAFDEEAHALRIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 T L E ++ V V P+ A++ + + + +G Sbjct: 62 TALACEY----WETQVSVHFVLDPAASGRAAAYTQQAMQQGQDAPAAMGTAMGA 111 >gi|269836034|ref|YP_003318262.1| chromosomal replication initiator protein DnaA [Sphaerobacter thermophilus DSM 20745] gi|269785297|gb|ACZ37440.1| chromosomal replication initiator protein DnaA [Sphaerobacter thermophilus DSM 20745] Length = 471 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 139/476 (29%), Positives = 241/476 (50%), Gaps = 19/476 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + ++ S L+ + + +W + + S + + P +F ++N++ Sbjct: 1 MQAKQLWQAALSDLEQTLSRANFETWLRNTEIISFEDDCATIGAPNSFAVEQLRNKFALQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVE------KTASSPSITKLSPINTNISKSPIILG 146 I R V+ V + + + +P + + Sbjct: 61 IQNTLSLILGRKVAVQFTVLNGGRRPARSGRRTAAADRAHAAPLGAPGGGAATAVAGVPQ 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + ++ L+ R+VF F+ GS+NR+ A + + NPL+I+ VG Sbjct: 121 QLELTATPEHGLNPRYVFEKFVVGSNNRL-----AHAAALAVADRPADKFNPLYIYGGVG 175 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL AI + ++ R P LR+ Y+++E F +AIR + ++ R ID+L+ID Sbjct: 176 LGKTHLLHAIGHRALARSPELRIRYVSSETFTNELINAIRQQRTEDFRNRYRTIDILMID 235 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N+L S KQ+V ++DRPP + +L R+RSR +GG+ + Sbjct: 236 DIQFIAGKESTQEEFFHTFNALYQSGKQIVISSDRPPKAIPTLADRLRSRFEGGLLADIQ 295 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 D E R +IL + + + + ++VL +VAR V ++ REL+GA N+++ + Sbjct: 296 PPDLETRAAIL-----AEKGRELGVTVPDDVLEYVARKVESNIRELEGALNKIIALSQLY 350 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 ++ E+A E L+ V G +++ ++ + V +Y I+R D+ R R +V PRQV Sbjct: 351 HRPISMELAIEALTDSVGAG-RRQVTVDQVVDTVVNYYQITRRDITGPGRRRDIVLPRQV 409 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYL + T S EIG+ G RDH+TVLH + K+E+ +ETD L+ E+ ++ L+ Sbjct: 410 AMYLLREETGSSLVEIGQCLGGRDHSTVLHGIEKMERQMETDARLRGEIMAIRELL 465 >gi|226193147|ref|ZP_03788757.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pakistan 9] gi|225934747|gb|EEH30724.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei Pakistan 9] Length = 506 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 141/506 (27%), Positives = 238/506 (47%), Gaps = 85/506 (16%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA-------------- 115 N + ++ P F W+K+++ I+ L ++ + V+ ++ A Sbjct: 11 NTLSIAAPNRFKLDWVKSQFSGRISDLARDFWNAPIEVQFVLDPKAGQRSPAGATPLAPR 70 Query: 116 --------LPSVEKTASSPSITKLSPINT------------------------------- 136 P AS+P++ +P Sbjct: 71 APLPSANPAPVAPGPASAPAVDAHAPAPAGMNAATAAAVAAAQAAQAAQANAAALNADEA 130 Query: 137 ------NISKSPIILGKQTISP-------------VFGSPLDSRFVFSTFIEGSSNRVAL 177 +++ G++T P S L+ F F+ G +N++A Sbjct: 131 ADLDLPSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLAR 190 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AA +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE + Sbjct: 191 AAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQY 245 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 + A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ Sbjct: 246 VSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVII 305 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 +D P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V Sbjct: 306 TSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDV 360 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQ 415 VA+ + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ Sbjct: 361 AFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQ 419 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + VA YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHA Sbjct: 420 KTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHA 479 Query: 476 VRKVEKMLETDITLKKEVELLKRLIS 501 VRK+ D L E+ +L++ + Sbjct: 480 VRKIADERGKDAQLNHELHVLEQTLK 505 >gi|325275332|ref|ZP_08141283.1| chromosomal replication initiation protein [Pseudomonas sp. TJI-51] gi|324099523|gb|EGB97418.1| chromosomal replication initiation protein [Pseudomonas sp. TJI-51] Length = 340 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 139/350 (39%), Positives = 211/350 (60%), Gaps = 13/350 (3%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ F F TF+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ Sbjct: 1 HTSYLNRTFTFDTFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLM 55 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF Sbjct: 56 HAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFAR 115 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R Sbjct: 116 KERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETR 175 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + + K+ + + +A+ + ++ REL+GA +++ F +T E Sbjct: 176 VAIL-----MKKADQAKVELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIE 230 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E L L+ K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK Sbjct: 231 LIRESLKDLLALQ-DKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKE 289 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 290 LTNHSLPEIGDMFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 339 >gi|189462574|ref|ZP_03011359.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136] gi|189430735|gb|EDU99719.1| hypothetical protein BACCOP_03264 [Bacteroides coprocola DSM 17136] Length = 469 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 125/471 (26%), Positives = 230/471 (48%), Gaps = 16/471 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ + +K+ V Y +WF+ + + + VP+ F +++ +Y+ + Sbjct: 9 ALWKRCLNFIKDNVNATAYKTWFEPVVPLKYEDKALTIGVPSPFFYEYLEEKYVGLLRAA 68 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT---NISKSPIILGKQTISPV 153 +E + + + + + P N +K+P +L + Sbjct: 69 IYKEIGEGTELMYSILTDKTNHIAIDMKGTERSSALPPQAPIHNGNKAPSLLQAPAVQ-D 127 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ + F FI+G+SN + T A+++A+ + NPLF++ G+GKTHL+ Sbjct: 128 LDPHLNPNYNFENFIKGTSNEFSRTVAETVAQNPAR-----TFNPLFLYGPSGVGKTHLI 182 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P RV+Y++A F ++ ++R N + + ID+L+IDD+Q G Sbjct: 183 NAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIIDDIQEFAG 242 Query: 274 -KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L D E+R Sbjct: 243 VTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEDRLLTRFKWGLVAELEKPDIELR 302 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAE 391 +IL+N++ L I E V+ ++A V S REL+G N L+ + + Sbjct: 303 KNILRNKIRRD-----GLVIPESVICYIAENVNESVRELEGIVNSLLVYSIQLKREINLD 357 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A ++ V E K + +++I V HY + + + + R R VV+ RQVAMYL+K Sbjct: 358 LAQRIVRKAVRCAEVKPLTVDNIIEKVCSHYKVDASTIHTKTRKREVVQVRQVAMYLAKK 417 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S +IG+ G++DH TVLHA + V+ +E D K E+E ++ + + Sbjct: 418 HTDTSSSKIGQLIGNKDHATVLHACKIVKDQVEVDKAFKAEIEEIEASLHQ 468 >gi|212691082|ref|ZP_03299210.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855] gi|237712418|ref|ZP_04542899.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 9_1_42FAA] gi|237726609|ref|ZP_04557090.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D4] gi|265752120|ref|ZP_06087913.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_33FAA] gi|212666314|gb|EEB26886.1| hypothetical protein BACDOR_00572 [Bacteroides dorei DSM 17855] gi|229435135|gb|EEO45212.1| chromosomal replication initiator protein DnaA [Bacteroides dorei 5_1_36/D4] gi|229453739|gb|EEO59460.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 9_1_42FAA] gi|263236912|gb|EEZ22382.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_33FAA] Length = 471 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 231/473 (48%), Gaps = 14/473 (2%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 +E + ++ + +++ V + +WF+ + + + VP+ F +++ + Sbjct: 3 HMIENDHVVLWGRCLNIIRDNVPETTFKTWFEPIVPLKYEDKALTIGVPSPFFYEFLEEK 62 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS--KSPIILG 146 +++ + +E + + + + + P T I Sbjct: 63 FVDLLRAALYKEIGEGTQLMYCILTDKTNHITVNMEGSKRSSALPTQTVIRDGNKAPNPM 122 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ + F FI+G+SN + T +++A+ + NPLF++ G Sbjct: 123 QAPAPQDLDPHLNPNYNFENFIKGNSNEFSRTVGETVAKNPAK-----TFNPLFLYGPSG 177 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHL AI + P RV+Y++A F ++ ++R N + + ID+L+ID Sbjct: 178 VGKTHLTNAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIID 237 Query: 267 DMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L Sbjct: 238 DIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRFKWGLVAELE 297 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 D E+R +IL+N++ LNI E V+ ++A V S REL+G N L+ + F Sbjct: 298 KPDVELRKNILRNKIRRD-----GLNIPETVINYIAENVNESVRELEGIINSLLAQSIIF 352 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++A+ ++ V E+K + +EDI + V HY I + + + R R VV+ RQV Sbjct: 353 KRDVDLDLAERIVRKAVRCCESKPVTVEDIIQKVCNHYEIEESAIHTKTRKREVVQVRQV 412 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 AMYL+K T S +IG+ G++DH TVLHA + V+ +E D T K ++E ++ Sbjct: 413 AMYLAKKHTDSSSSKIGQLIGNKDHATVLHACKIVKDQVEVDKTFKADIEEIE 465 >gi|88705400|ref|ZP_01103111.1| Bacterial chromosomal replication initiator protein, DnaA [Congregibacter litoralis KT71] gi|88700490|gb|EAQ97598.1| Bacterial chromosomal replication initiator protein, DnaA [Congregibacter litoralis KT71] Length = 391 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 144/397 (36%), Positives = 225/397 (56%), Gaps = 18/397 (4%) Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 VE + A K +PS+ + + SKS + Q L S + FST Sbjct: 10 VEANAGTSAENPTAKPRQAPSLVETTLHYGQASKSEVHEALQHQH-----NLVSNYTFST 64 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+EG SN++AL AA ++E Y NPLF++ VGLGKTHL+ A+ NA +P+ Sbjct: 65 FVEGKSNQLALAAANQVSENPGGAY-----NPLFLYGGVGLGKTHLMHAVGNALKLNKPD 119 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 R+VYL +E F+ A++ N + K R++D LLIDD+QF K Q EF H N Sbjct: 120 ARIVYLHSERFVADMVKALQLNAIADFKRYYRSVDALLIDDIQFFAKKDRSQEEFFHTFN 179 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +LL+ +Q++ DR P E++ L+ R++SR G++V + D E R +IL +++ Sbjct: 180 ALLEGGQQMILTCDRYPKEIDGLEERLKSRFGWGLTVAVEPPDLETRVAIL-----MNKA 234 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTG 404 +LN+ + +A+ + ++ REL+GA +++ +F + E+ E L L+ Sbjct: 235 TQARLNLPPDAAFFIAQRIRSNVRELEGALKRVIASANFTRRPIDVELVKESLKDLLALQ 294 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 K++ +++IQR VA+++ I DL S RR R+V RPRQVAM L+K +T S PEIG F Sbjct: 295 -DKQVSLDNIQRTVAEYFKIKVADLNSRRRNRSVARPRQVAMALAKELTNYSLPEIGDSF 353 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G RDHTTVLHA RK+ ++ ET+ + ++ + L RL++ Sbjct: 354 GGRDHTTVLHACRKIRELRETNSDIHEDYKNLLRLLT 390 >gi|240950075|ref|ZP_04754377.1| chromosomal replication initiation protein [Actinobacillus minor NM305] gi|240295450|gb|EER46205.1| chromosomal replication initiation protein [Actinobacillus minor NM305] Length = 446 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 159/470 (33%), Positives = 248/470 (52%), Gaps = 30/470 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 S++T S LK +V Y W + L+ S + + L F++ +K+ +L I Sbjct: 2 SSLWTDCLSHLKTKVSDTEYNIWLRPLQP-SFSNGELTLYAQNPFVEKHVKDHFLAEIID 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 L + SR + + R PS + S +P G+ +P F Sbjct: 61 LAR-FLSRNDQLVVSTRIGIRPSEQAERS--------------VSAPAASGENLGTPTFR 105 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S +D F F++G SN++A AQ + + NP ++AS GLGKTHLL A Sbjct: 106 SGIDPTQRFDNFVQGRSNQLAKAVAQQVVSDLGESH----CNPFSLYASTGLGKTHLLHA 161 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC--ALNLKDSLRNIDLLLIDDMQFLQG 273 I NA K+ P+LRV+Y+ +E F AI N A LK R++D+L+IDD+QFL Sbjct: 162 IGNALQKKDPSLRVLYIHSERFYRDILKAINTNSNEADKLKKFYRSLDVLMIDDIQFLAD 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +Q EF HL N+L + KQ+V ++ P +E +D I+SRL G+S + + E R Sbjct: 222 KPKVQEEFLHLFNALFEQKKQIVLTSNVFPKNIERIDDAIKSRLSWGISSTIEPPELETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + E+ +I+EE + + + T REL+GA N+++ +T + Sbjct: 282 VAILRK-----KAEERGADISEEATYLMGQKLRTHVRELEGALNRVIAWQKLTHRPITVD 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 E L + + + + IE+IQR+VA++YNI D+ S R RT+ RPRQ+AM L+K Sbjct: 337 AVRETLRDMFAS-YDQLITIENIQRVVAEYYNIKLTDIKSKSRTRTIARPRQMAMALAKE 395 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIGR FG RDHTTV+HA + + ++ ET+ T++++ L R +S Sbjct: 396 LTNHSLPEIGREFGGRDHTTVMHACKTISELRETESTIQEDYTNLTRKLS 445 >gi|188590796|ref|YP_001795396.1| chromosomal replication initiation protein [Cupriavidus taiwanensis LMG 19424] gi|226735798|sp|B2AFZ7|DNAA_CUPTR RecName: Full=Chromosomal replication initiator protein DnaA gi|170937690|emb|CAP62674.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Cupriavidus taiwanensis LMG 19424] Length = 589 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 207/394 (52%), Gaps = 13/394 (3%) Query: 110 LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 +V+ + ++ +P + + + + + + S L+ F F+ Sbjct: 206 VVQMDPAEASARSYRAPQQGQHPHAAMGNGAAQMPGHQPSDTVHERSRLNPILTFDNFVT 265 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G +N++A AA +A Y NPL+++ VGLGKTHL+ +I N + P R+ Sbjct: 266 GKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHSIGNHMLMENPRARI 320 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 Y+ AE ++ A + K ++DLLLIDD+QF GK Q EF + +L+ Sbjct: 321 RYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALI 380 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + Sbjct: 381 ANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MKKAAAE 435 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 +N+ EEV VA+ + ++ REL+GA +++ +F +T E+ E L L+ T + + Sbjct: 436 NVNVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGKDITIEVTREALKDLL-TVQNR 494 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG R Sbjct: 495 QISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGR 554 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTVLHAVRK+ D L E+ +L++ + Sbjct: 555 DHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 588 Score = 76.6 bits (187), Expect = 8e-12, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 46/122 (37%), Gaps = 10/122 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLETI 93 + + +++L+ ++ P + +W + L + + ++ P F W+K+++ I Sbjct: 2 QDFWQAAAAQLERELTPQQFKTWIKPLAPVAFDEETHALRIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 T L E V+ ++ + AS + + P + + +P Sbjct: 62 TALACEYWEAQVSVQFVL--------DPAASGRAAAYMQPAQPGMGAGGMDRMDHHAAPG 113 Query: 154 FG 155 G Sbjct: 114 TG 115 >gi|145592567|ref|YP_001156864.1| chromosomal replication initiator protein DnaA [Salinispora tropica CNB-440] gi|145301904|gb|ABP52486.1| chromosomal replication initiator protein DnaA [Salinispora tropica CNB-440] Length = 587 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 131/390 (33%), Positives = 206/390 (52%), Gaps = 18/390 (4%) Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 ALP T S P P + P + G+ L+ +++F TF+ GSSNR Sbjct: 212 ALPRELGTDSGPGRVDHRPGGREDRRPPAP------ADGGGNRLNPKYMFETFVIGSSNR 265 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A A+ ++AE + Y NPLFI+ S GLGKTHLL AI + + V Y++ Sbjct: 266 FAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLHAIGHYATTLGNANSVRYVST 320 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQ 293 E F F +++RD+ + R++D+LLIDD+QFL+ + Q EF H N+L ++ KQ Sbjct: 321 EEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFHTFNTLHNANKQ 380 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V +DR P +L +L+ R+R+R + G+ + D E R +IL+ + A + L Sbjct: 381 IVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQER-----LFAP 435 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIE 412 +VL +A V+ S REL+GA ++ S + +A+E+L + G ++ + Sbjct: 436 PDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRDFIPDGTGPEITAD 495 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I A ++ +S DL + R R +V RQVAMYL + +T S P IG+ FG RDHTTV Sbjct: 496 QIMVATADYFGVSLEDLRGHSRSRVLVNARQVAMYLCRELTDLSLPRIGQAFGGRDHTTV 555 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLISE 502 +HA RK+ + + +L ++ L I + Sbjct: 556 MHADRKIRQQMAERRSLYNQIAELTNRIKQ 585 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 4/130 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++T + L +++ ++ + + +++ + +SVP F + I++R Sbjct: 5 TDLAAVWTATTDELADEIVSAQQRAYLRLTRLRAIVEDTALVSVPDAFTRDVIESRLRPA 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 IT+ R V + VR P + +I +P + P + Sbjct: 65 ITEALTRRLGRPIQVAVTVR---APEDAPGRPAGTIYHSAP-SPETGALPGDTTDRAAGG 120 Query: 153 VFGSPLDSRF 162 +D RF Sbjct: 121 GPDDGVDHRF 130 >gi|315500819|ref|YP_004079706.1| chromosomal replication initiator protein dnaa [Micromonospora sp. L5] gi|315407438|gb|ADU05555.1| chromosomal replication initiator protein DnaA [Micromonospora sp. L5] Length = 609 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 129/399 (32%), Positives = 206/399 (51%), Gaps = 26/399 (6%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISP--------------VFGSPLDSRFVFS 165 E + P+ + P + P G P G+ L+ +++F Sbjct: 219 ESPPADPAPMRGLPRDGATDNGPGRGGADHHRPGGGQADRRLPGGTESGGNRLNPKYMFE 278 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ GSSNR A A+ ++AE + Y NPLFI+ S GLGKTHLL AI + + Sbjct: 279 TFVIGSSNRFAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLHAIGHYATTLGN 333 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 V Y++ E F F +++RD+ + R++D+LLIDD+QFL+ + Q EF H Sbjct: 334 ARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFHTF 393 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E R +IL+ + A + Sbjct: 394 NTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQER 453 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNT 403 L +VL +A V+ S REL+GA ++ S + +A+E+L + Sbjct: 454 -----LFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRDFIPD 508 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 G ++ + I A ++ +S DL + R R +V RQVAMYL + +T S P IG+ Sbjct: 509 GAGPEITADQIMVSTADYFGVSLEDLRGHSRSRVLVNARQVAMYLCRELTDLSLPRIGQA 568 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTV+HA RK+ + + +L ++ L I + Sbjct: 569 FGGRDHTTVMHADRKIRQQMAERRSLYNQIAELTNRIKQ 607 Score = 60.1 bits (144), Expect = 9e-07, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 51/125 (40%), Gaps = 1/125 (0%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++T + L +++ ++ + + +++ + LSVP F + I++R Sbjct: 5 TDLAAVWTATTDELADEIISAQQRAYLRLTRLRAIVEDTALLSVPDAFTRDVIESRLRPA 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 IT+ R V + VR P + A + + P+ + + +P+ Q P Sbjct: 65 ITEALSRRLGRPIQVAVTVRVADDPGA-RPAGTVYRSGPEPLPEHDAAAPLPGFDQPGPP 123 Query: 153 VFGSP 157 P Sbjct: 124 ASAFP 128 >gi|324999881|ref|ZP_08120993.1| chromosomal replication initiation protein [Pseudonocardia sp. P1] Length = 593 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 120/384 (31%), Positives = 207/384 (53%), Gaps = 15/384 (3%) Query: 123 ASSPSITKLSPINTNISKSPIILGKQT---ISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 A P + + P Q ++P + L+ R+ F TF+ G+SNR + A Sbjct: 215 APQPPSADSGSRDGGGTSWPAYTAPQAGDPVAPRSQTRLNERYTFDTFVIGASNRFSHAA 274 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A +++E + Y NPLFI GLGKTHLL A+ + + + P +RV Y++ E F Sbjct: 275 AVAVSEAPARAY-----NPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTN 329 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAA 298 F +++RD+ + + R++D+LL+DD+QFL+GK Q EF H N+L ++ KQ+V ++ Sbjct: 330 DFINSLRDDRKVAFQRRYRDVDVLLVDDIQFLEGKEGTQEEFFHTFNTLHNANKQIVVSS 389 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DRPP LE+L+ R+R+R + G+ + + E R +IL+ + A + L + EVL Sbjct: 390 DRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAILRKKAAQDR-----LAVPGEVLE 444 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A + + REL+GA ++ S + ++A+ +L L+ ++ I + Sbjct: 445 FIAERIERNIRELEGALIRVTAFASLNRQAVDTQLAEIVLRDLIPDSAASEITAPTIMAV 504 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 A+ + ++ +DL + + + + RQ+AMYL + +T S P IG+ FG RDHTTV+HA + Sbjct: 505 TAEFFGVTLDDLSGPGKTKALAQARQIAMYLCRELTDLSLPRIGQTFGGRDHTTVMHADK 564 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+ + ++V+ L I Sbjct: 565 KIRNEISLRRKTFEQVQELTARIK 588 Score = 45.0 bits (105), Expect = 0.032, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 39/124 (31%), Gaps = 13/124 (10%) Query: 11 QENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQ--------VGPDVYASWFQRL 62 Q D + E P + + +++ V + L + P ++ + Sbjct: 11 QHTDGDEREGEPRMTDQPG----DLGAVWNRVIADLSGSSADSGTPALSPQQ-RAFLRLT 65 Query: 63 KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKT 122 + +L L+ P+ F K I+ I+ + ++V + A + Sbjct: 66 RPLGLLDGTALLAAPSEFAKDAIERILRRPISDALGRHLGVSVNLAVVVDASAASGGTEV 125 Query: 123 ASSP 126 P Sbjct: 126 PDPP 129 >gi|315605508|ref|ZP_07880545.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 180 str. F0310] gi|315312775|gb|EFU60855.1| DNA-directed DNA replication initiator protein [Actinomyces sp. oral taxon 180 str. F0310] Length = 476 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 137/464 (29%), Positives = 223/464 (48%), Gaps = 21/464 (4%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 +++GP S + + + + L+VP F K WI+++ +T R + Sbjct: 20 DELGPVA-TSMLRSARPLGDIEGTILLAVPNGFTKQWIEDKAQSKLTAALSVNLGRTVRI 78 Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP--LDSRFVFS 165 I V E +P + ++ +P P L+ +F F Sbjct: 79 AITVDPSLEVVAEDEEPAPVQQRPKEKAPQPARKEAHSPALVSAPTDSGPTHLNPKFTFD 138 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G SNR A AA + +E NPLFI+ GLGKTHLLQAI + ++ P Sbjct: 139 TFVIGPSNRFAHAAALAASETPGTA-----FNPLFIYGDSGLGKTHLLQAIGHNALSMMP 193 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 +L+V Y+ +E F F +AIR N N R +D+LLIDD+QF+ K Sbjct: 194 HLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTVEG 253 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + KQ+V +D PP++L+ + R+RSR G+ V + D E R +IL Sbjct: 254 FFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAILHK- 312 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLS 398 + + L + EV +VA ++++ REL+GA ++ S + + +A +L Sbjct: 313 ----KADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQMMLK 368 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 V+ + ++ + I A ++ ++ + S+ R VV RQ+AMYL + +T S P Sbjct: 369 DFVSNPDDNEITVSLIMSQCAVYFGVTIEQMGSSERSHNVVEARQIAMYLCRELTDLSLP 428 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +IG+ FG RDHTTV+HA +K+ K+++ V L I + Sbjct: 429 KIGQAFG-RDHTTVMHANKKISKLMKEKRETFNHVSELTNRIKQ 471 >gi|227541371|ref|ZP_03971420.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227182922|gb|EEI63894.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 527 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 140/514 (27%), Positives = 246/514 (47%), Gaps = 44/514 (8%) Query: 19 EKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVY---------ASWFQRLKFHSVLH 69 E+TP D L + E ++ V + L + + S+ + + +V+ Sbjct: 19 ERTPAAVTD---LSSSPEQLWRDVLTTLTTREKEPDFPFAPISQSNRSYLRLTRPLAVVQ 75 Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV----ALPSVEKTASS 125 + LS P K ++ + + +++E + I V +LP ++ Sbjct: 76 GHLLLSTPHKLAKRALEGETGQAVALVWEEVTGTPINLAISVDPSLVDDSLPPTSTPETA 135 Query: 126 PSITKL---------------SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 PS+T + + + +P S L+ + F +F+ G Sbjct: 136 PSVTPPRVRVTRPRPPEPAPEPTPVPAVPPNYTPSTQPKQAPAANSTLNPKHTFESFVIG 195 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 SN+ + AA ++AE + Y NPL+I GLGKTHLL A N +++ P +RV+ Sbjct: 196 KSNQFSQAAAFAVAESPAEAY-----NPLYIWGGSGLGKTHLLHATGNYALQLHPGIRVM 250 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLD 289 Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Q EF H N+L Sbjct: 251 YVSSEEFTNDYINSVRDDKQESFKHRYRNLDILMVDDIQFLEGKEGTQEEFFHTFNALHQ 310 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + KQ++ ++DRPP L +L+ R+R+R Q G+ + D E R +IL+ + Sbjct: 311 ANKQIILSSDRPPQNLVTLEDRLRTRFQAGLITDIQPPDLETRIAILEK-----KAIAEH 365 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKK 408 + ++ + L +A S R L+GA ++ S +T ++ E LS L+ T + + Sbjct: 366 VQVDRDSLTEIATPFPGSIRSLEGALIRVTAFASLTHRQITPDLVREALSDLIGTEQNVE 425 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + DI A+ +N+ + L + R V RQ+AMYL + T S P+IG FG +D Sbjct: 426 ITPTDIIAETARFFNLPVSQLRGKTKTRPVSHARQLAMYLCREFTSLSLPKIGAEFG-KD 484 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 HTTV++A RK+ K + D +V+ L + I + Sbjct: 485 HTTVMYAERKIGKEMSKDRDTYDQVQQLAQNIKQ 518 >gi|150002609|ref|YP_001297353.1| chromosomal replication initiation protein [Bacteroides vulgatus ATCC 8482] gi|254881428|ref|ZP_05254138.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_3_47FAA] gi|149931033|gb|ABR37731.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus ATCC 8482] gi|254834221|gb|EET14530.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_3_47FAA] Length = 471 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 124/473 (26%), Positives = 230/473 (48%), Gaps = 14/473 (2%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 +E + ++ + +++ V + +WF+ + + + VP+ F +++ + Sbjct: 3 HMIENDHVVLWGRCLNLIRDNVPETTFKTWFEPIVPLKYEDKALTIGVPSPFFYEFLEEK 62 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS--KSPIILG 146 +++ + +E + + + + + P T I Sbjct: 63 FVDLLRAALYKEIGEGTQLMYCILTDKTNHITVNMEGSKRSSALPTQTVIRDGNKAPNPM 122 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ + F FI+G+SN + T +++A+ + NPLF++ G Sbjct: 123 QAPAPQDLDPHLNPNYNFENFIKGNSNEFSRTVGETVAKNPAK-----TFNPLFLYGPSG 177 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHL AI + P RV+Y++A F ++ ++R N + + ID+L+ID Sbjct: 178 VGKTHLTNAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIID 237 Query: 267 DMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L Sbjct: 238 DIQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRFKWGLVAELE 297 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 D E+R +IL+N++ LNI E V+ ++A V S REL+G N L+ + F Sbjct: 298 KPDVELRKNILRNKIRRD-----GLNIPETVINYIAENVNESVRELEGIINSLLAQSIIF 352 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++A+ ++ V E+K + +EDI + V HY I + + + R R VV+ RQV Sbjct: 353 KRDVDLDLAERIVRKAVRCCESKPVTVEDIIQKVCSHYEIEESAIHTKTRKREVVQVRQV 412 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 AMYL+K T S +IG+ G++DH TVLHA + V+ +E D K ++E ++ Sbjct: 413 AMYLAKKHTDSSSSKIGKLIGNKDHATVLHACKIVKDQVEVDKAFKADIEEIE 465 >gi|330470833|ref|YP_004408576.1| chromosomal replication initiator protein DnaA [Verrucosispora maris AB-18-032] gi|328813804|gb|AEB47976.1| chromosomal replication initiator protein DnaA [Verrucosispora maris AB-18-032] Length = 607 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 123/350 (35%), Positives = 196/350 (56%), Gaps = 12/350 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ +++F TF+ GSSNR A A+ ++AE + Y NPLFI+ S GLGKTHLL Sbjct: 266 GNRLNPKYMFETFVIGSSNRFAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLH 320 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + V Y++ E F F +++RD+ + R++D+LLIDD+QFL+ + Sbjct: 321 AIGHYATTLGNARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENR 380 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E R Sbjct: 381 ERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRI 440 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL+ + A + L +VL +A V+ S REL+GA ++ S + + Sbjct: 441 AILQKKAAQER-----LYAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSL 495 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+E+L + G ++ + I A ++ +S DL + R R +V RQVAMYL + + Sbjct: 496 AEEVLRDFIPDGAGPEITADQIMVSTADYFGVSLEDLRGHSRSRVLVNARQVAMYLCREL 555 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S P IG+ FG RDHTTV+HA RK+ + + +L ++ L I + Sbjct: 556 TDLSLPRIGQAFGGRDHTTVMHADRKIRQQMAERRSLYNQIAELTNRIKQ 605 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 53/140 (37%), Gaps = 8/140 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++T + L +++ ++ + + +++ + V LSVP F + I++R Sbjct: 5 TDLAAVWTATTDELADEIISAQQRAYLRLTRLRAIVEDTVLLSVPDAFTRDVIESRLRPA 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKT------ASSPSITKLSPIN-TNISKSPIIL 145 IT+ R V + VR E T + P++ P++ ++S Sbjct: 65 ITEALTRRLGRPIQVAVTVRLPEDGRTEGTVYHSAAETGPAVHDGGPVDYAGPAESGSTT 124 Query: 146 GKQTISPVFGSPLDSRFVFS 165 + P+ F Sbjct: 125 DDRQQLPLIPEQHHP-HRFD 143 >gi|269954811|ref|YP_003324600.1| chromosomal replication initiator protein DnaA [Xylanimonas cellulosilytica DSM 15894] gi|269303492|gb|ACZ29042.1| chromosomal replication initiator protein DnaA [Xylanimonas cellulosilytica DSM 15894] Length = 468 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 131/476 (27%), Positives = 232/476 (48%), Gaps = 19/476 (3%) Query: 32 EVNCESIFTIVSSRLKN--QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + + ++ L+ ++ ++ + K +VL+ V ++VP + +++ Sbjct: 3 DEDISKVWAQTLEVLETRPEITARQL-AFVRLAKPMAVLNGTVFIAVPHEQTRTYLETSV 61 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + I V ++ + P+ + P + +P Q Sbjct: 62 RDQLISALSSVLGFDVRFGITVDPEI---SAESLTGPTQDYVEPEEEDDVDAPAPPLPQP 118 Query: 150 ISPVFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + P + L+ R+VF TF+ G+SNR A V NPLFI+ GLG Sbjct: 119 VRPAAEPTRLNPRYVFETFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGDSGLG 173 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI + + P++RV Y+ +E F F ++I D + R++D+LLIDD+ Sbjct: 174 KTHLLHAIGHYAHNLYPHVRVRYVNSEEFTNDFINSIGDKKQGAFQRRYRDVDVLLIDDI 233 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQGK EF H N+L ++ KQVV +D PP +L + R+RSR + G+ + Sbjct: 234 QFLQGKEQTMEEFFHTFNALHNANKQVVITSDVPPKQLNGFEDRLRSRFEWGLITDVQPP 293 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D E R +IL+ + A + L++ ++VL ++ ++T+ REL+GA ++ + Sbjct: 294 DLETRIAILRKKAASDK-----LDVPQDVLSYIGSRISTNIRELEGALIRVTAFANLNRQ 348 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ +L L+ + ++ + A ++ +S DL + R R +V RQ+AM Sbjct: 349 QVDLPLAEIVLRDLIIDDDPAEVTPAVVIAQTAAYFGLSIEDLCGSSRSRVLVTARQIAM 408 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL + +T S P+IG++FG RDHTTV+HA +K+ + + +V L I + Sbjct: 409 YLCRELTDLSLPKIGQQFGGRDHTTVMHANKKIAGQMAERRSTYNQVTELTSRIRQ 464 >gi|107098995|ref|ZP_01362913.1| hypothetical protein PaerPA_01000001 [Pseudomonas aeruginosa PACS2] gi|296386473|ref|ZP_06875972.1| chromosomal replication initiation protein [Pseudomonas aeruginosa PAb1] Length = 381 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 140/350 (40%), Positives = 210/350 (60%), Gaps = 13/350 (3%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ Sbjct: 42 HTSYLNRTFTFENFVEGKSNQLARAAAWQVADNLKHGY-----NPLFLYGGVGLGKTHLM 96 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF Sbjct: 97 HAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFAR 156 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R Sbjct: 157 KERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETR 216 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + E K+ + + +A+ + ++ REL+GA +++ F +T E Sbjct: 217 VAIL-----MKKAEQAKIELPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRPITIE 271 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E L L+ K + I++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK Sbjct: 272 LIRESLKDLLALQ-DKLVSIDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKE 330 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 331 LTNHSLPEIGVAFGGRDHTTVLHACRKIAQLRESDADIREDYKNLLRTLT 380 >gi|294775360|ref|ZP_06740882.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus PC510] gi|319642816|ref|ZP_07997454.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_40A] gi|294450817|gb|EFG19295.1| chromosomal replication initiator protein DnaA [Bacteroides vulgatus PC510] gi|317385560|gb|EFV66501.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 3_1_40A] Length = 468 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 124/472 (26%), Positives = 230/472 (48%), Gaps = 14/472 (2%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 +E + ++ + +++ V + +WF+ + + + VP+ F +++ ++ Sbjct: 1 MIENDHVVLWGRCLNLIRDNVPETTFKTWFEPIVPLKYEDKALTIGVPSPFFYEFLEEKF 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS--KSPIILGK 147 ++ + +E + + + + + P T I + Sbjct: 61 VDLLRAALYKEIGEGTQLMYCILTDKTNHITVNMEGSKRSSALPTQTVIRDGNKAPNPMQ 120 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 L+ + F FI+G+SN + T +++A+ + NPLF++ G+ Sbjct: 121 APAPQDLDPHLNPNYNFENFIKGNSNEFSRTVGETVAKNPAK-----TFNPLFLYGPSGV 175 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL AI + P RV+Y++A F ++ ++R N + + ID+L+IDD Sbjct: 176 GKTHLTNAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIIDD 235 Query: 268 MQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +Q G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L Sbjct: 236 IQEFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRFKWGLVAELEK 295 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FA 385 D E+R +IL+N++ LNI E V+ ++A V S REL+G N L+ + F Sbjct: 296 PDVELRKNILRNKIRRD-----GLNIPETVINYIAENVNESVRELEGIINSLLAQSIIFK 350 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + ++A+ ++ V E+K + +EDI + V HY I + + + R R VV+ RQVA Sbjct: 351 RDVDLDLAERIVRKAVRCCESKPVTVEDIIQKVCSHYEIEESAIHTKTRKREVVQVRQVA 410 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 MYL+K T S +IG+ G++DH TVLHA + V+ +E D K ++E ++ Sbjct: 411 MYLAKKHTDSSSSKIGKLIGNKDHATVLHACKIVKDQVEVDKAFKADIEEIE 462 >gi|170076637|ref|YP_001733275.1| chromosomal replication initiation protein [Synechococcus sp. PCC 7002] gi|226735857|sp|B1XKQ0|DNAA_SYNP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|169884306|gb|ACA98019.1| chromosomal replication initiator protein DnaA [Synechococcus sp. PCC 7002] Length = 449 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 133/473 (28%), Positives = 228/473 (48%), Gaps = 32/473 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + ++ V ++L+ Q+ Y +W Q + + L P F+ I+ Y Sbjct: 1 MTQNPQWLWQEVLTKLEQQLSRPTYETWIQPTAIQQWREDEIVLCAPNAFVLNHIQKYYG 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 IT+ E + V + + ++ ++ S GK+T Sbjct: 61 ALITETIAELLQQPVKVRLT-----------SPEGNTLAATQSFYSSRSGQSTRPGKKTP 109 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+S++ FS F+ G +NR+A AA ++AE NPL + VGLGKT Sbjct: 110 E------LNSKYTFSRFVVGPTNRMAHAAALAVAESPGRD-----FNPLVLCGGVGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + + QP+ ++ Y++ E F AIR + ++ R D+LL+DD+QF Sbjct: 159 HLMQAIGHYRLDTQPDAKIFYVSTEQFTNDLIVAIRKDSLQTFREHYRTADILLVDDIQF 218 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF + N+L ++ KQ+V A+DRPP ++ L R+ SR G+ + D Sbjct: 219 IEGKEYTQEEFFYTFNTLHEAGKQIVLASDRPPHQIPGLQQRLSSRFSMGLIADIQPPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-L 388 E R +IL+ + E LN++ V+ ++A T + REL+GA + V + + + + Sbjct: 279 ETRMAILQK-----KAEAENLNLSRSVIEYIATHYTANIRELEGALLRAVTHIAISGLPM 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E +L+ V + I ++ A+ +S DL R R + RQ+AMYL Sbjct: 334 TVENLAPILNPTVEYAPAA---PDVILQIAAEATGVSIEDLKGASRRREISTARQIAMYL 390 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV+++ K+ ++L + + + V + I+ Sbjct: 391 MRQHTDLSLPRIGELFGGKDHTTVMYSCDKIGQLLTKNQKISQLVSQISDRIN 443 >gi|254876148|ref|ZP_05248858.1| chromosomal replication initiator protein dnaA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842169|gb|EET20583.1| chromosomal replication initiator protein dnaA [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 497 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 151/484 (31%), Positives = 245/484 (50%), Gaps = 48/484 (9%) Query: 54 VYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR- 112 Y +W + + + + + + K IK++Y E I+ QE H +E + Sbjct: 25 EYKTWIKPIHVEQ-NNYLFTIYCNNEYFKKHIKSKYGEIISSTIQEFHDGDLLIEYSNKK 83 Query: 113 SVALPSVEKTASSPSIT---------KLSPINTNISKSP--------------------- 142 S E T+ P K T++++ P Sbjct: 84 FSGEKSPEVTSVGPQANFFNQKNVEIKDDSEETSLNQEPKKSQKKLSSKNSASQELFGFD 143 Query: 143 ---IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +I K FG PL ++VF +F+ G +N++A AA ++ + NPL Sbjct: 144 EAMLITDKDDQEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPL 198 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI+ GLGKTHL+QAI N + + PN R++Y +E F+ + ++IR + R+ Sbjct: 199 FIYGGSGLGKTHLMQAIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRS 258 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR Sbjct: 259 ADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGY 318 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + + D E R +IL + + D + E +A V T+ REL+GA N++ Sbjct: 319 GLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRV 373 Query: 379 VFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + F T E+A L ++ KK++I++IQ++VA Y I DL SN+R R Sbjct: 374 LTTSKFNHKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRN 432 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ +++ ++ + ELL Sbjct: 433 IARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTSISDDYELLL 492 Query: 498 RLIS 501 IS Sbjct: 493 DKIS 496 >gi|116628684|ref|YP_813856.1| DNA replication ATPase initiation [Lactobacillus gasseri ATCC 33323] gi|116094266|gb|ABJ59418.1| DNA replication ATPase initiation [Lactobacillus gasseri ATCC 33323] Length = 464 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 237/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + ++ +K Y +WF+ K S + ++V + K + + Sbjct: 13 DLDKFWQFFNAEMKKSYSTVAYNAWFKNTKPISFNKKTKEMIIAVESPVAKGYWEKNLAS 72 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + V A +L I + IL + Sbjct: 73 QLIQEAYAYADMEIQPKFEV-----------AGKEGPERLVTPKPRIKTNQEILEDRRDE 121 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 122 FAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 176 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF Sbjct: 177 LMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFF 236 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 237 SKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLE 296 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 297 TRIAILRK-----KAETDGLAIDDSTLDYIASQVDTNIRELEGALVKVQAHATIEREDIN 351 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS Sbjct: 352 VDLAKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLS 411 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 412 RELTDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 462 >gi|330890249|gb|EGH22910.1| chromosomal replication initiation protein [Pseudomonas syringae pv. mori str. 301020] Length = 343 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 138/350 (39%), Positives = 211/350 (60%), Gaps = 13/350 (3%) Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ F F F+EG SN++A AA +A+ HGY NPLF++ VGLGKTHL+ Sbjct: 4 HTSYLNRTFTFENFVEGKSNQLARAAAWQVADNPKHGY-----NPLFLYGGVGLGKTHLM 58 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 A+ N +K+ PN +VVYL +E F+ A++ N K R++D LLIDD+QF Sbjct: 59 HAVGNPLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFAR 118 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+LL+ +QV+ +DR P E+E L+ R++SR G++V + + E R Sbjct: 119 KERSQEEFFHTFNALLEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETR 178 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL + + + K+++ + +A+ + ++ REL+GA +++ F +T E Sbjct: 179 VAIL-----MKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIE 233 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E L L+ K + +++IQR VA++Y I +DLLS RR R+V RPRQVAM LSK Sbjct: 234 LIRESLKDLLALQ-DKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKE 292 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S PEIG FG RDHTTVLHA RK+ ++ E+D ++++ + L R ++ Sbjct: 293 LTNHSLPEIGDVFGGRDHTTVLHACRKINELKESDADIREDYKNLLRTLT 342 >gi|153811986|ref|ZP_01964654.1| hypothetical protein RUMOBE_02379 [Ruminococcus obeum ATCC 29174] gi|149831885|gb|EDM86971.1| hypothetical protein RUMOBE_02379 [Ruminococcus obeum ATCC 29174] Length = 459 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 148/478 (30%), Positives = 256/478 (53%), Gaps = 29/478 (6%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 ++ E+ + + +K VG + +W + LK + V N++ + VP+ + Sbjct: 1 MDKVIEN-WDKILQTVKADYDVGDVAFNTWLKPLKVYDVKDNVITILVPSEQV------- 52 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + L +++ + V I + E SP +++ + + Sbjct: 53 ---VLINLLNKKYKLLLQVTIC-EITGMDECEVKFISPDEAPKKEVSSYTNAAAETGLTD 108 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + L+ +++F TFI G++N+ A AA ++AE Y NPLFI+ GLG Sbjct: 109 IDRRCEEAHLNPKYIFDTFIVGNNNKFAQAAALAVAESPGDTY-----NPLFIYGGAGLG 163 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLI 265 KTHL+ +IA+ I+ N +V+Y+T+E F IR+ ++ RNID+LL+ Sbjct: 164 KTHLMHSIAHYIIEHDENSKVLYVTSEEFTNELIETIRNGNNSAMSKFREKYRNIDVLLV 223 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H NSL + KQ++ ++D+PP ++E L+ R RSR + G+ + Sbjct: 224 DDIQFIIGKESTQEEFFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADI 283 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 L DYE R +IL ++E NI+EEV+ ++A + ++ REL+GAFN+++ Sbjct: 284 TLPDYETRMAILHK-----KEELEGYNISEEVIKYIATNIKSNIRELEGAFNKVMASSKL 338 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T E+A++ L +++ E K + + I +VA+HY+++ DL N+R +V PRQ Sbjct: 339 EKKEVTLELAEQALKDIISPDEQKVITPDYIISVVAEHYHVTVADLCGNKRSSKIVMPRQ 398 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AMYL + + S IG+ GDRDHTTV+H + K+E L+T+ LK ++ L++ I+ Sbjct: 399 IAMYLCRDIIDTSLKTIGKNLGDRDHTTVMHGIEKIENELKTNDNLKNSIDTLRKKIN 456 >gi|227889156|ref|ZP_04006961.1| DNA-directed DNA replication initiator protein [Lactobacillus johnsonii ATCC 33200] gi|227850385|gb|EEJ60471.1| DNA-directed DNA replication initiator protein [Lactobacillus johnsonii ATCC 33200] Length = 464 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 238/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + ++ +K Y +WF+ K S + ++V + K + + Sbjct: 13 DLDKFWQFFNAEMKKSYNTVAYNAWFKNTKPLSFNKKTKEMIIAVESPVAKGYWEKNLAS 72 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + V AS +L I + IL + Sbjct: 73 QLIQEAYAYADMEIQPKFEV-----------ASKEGPERLVTPQPRIKTNQEILENRRDE 121 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 122 FAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 176 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF Sbjct: 177 LMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFF 236 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 237 SKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLE 296 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 297 TRIAILRK-----KAETDGLAIDDSTLDYIASQVDTNIRELEGALVKVQAHATIEREDIN 351 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS Sbjct: 352 VDLAKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLS 411 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 412 RELTDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 462 >gi|149375636|ref|ZP_01893405.1| chromosomal replication initiation protein [Marinobacter algicola DG893] gi|149360038|gb|EDM48493.1| chromosomal replication initiation protein [Marinobacter algicola DG893] Length = 445 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 152/454 (33%), Positives = 234/454 (51%), Gaps = 37/454 (8%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSR------------IQGVEILVRSVALPS--- 118 L P F+ W+ +YL I ++ ++ H + +++VRS S Sbjct: 2 LFAPNRFVMDWVNEKYLRRIEEVLKDLHGGQAPRIDMKVGSAPRSSDLVVRSENAVSGVA 61 Query: 119 ---------VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 V + + T +P S S + S L+ F F TF+E Sbjct: 62 AEQEEAGSRVTEEEKGVAATVTTPSVKAKSSSERRSVQVEGDIKHQSFLNEGFTFDTFVE 121 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G SN++A A+ +AE Y NPLF++ VGLGKTHL+ AI N ++R P +V Sbjct: 122 GKSNQLARAASMQVAENPGGAY-----NPLFLYGGVGLGKTHLMHAIGNDIVRRNPRAKV 176 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 YL +E F+ A++ N K R++D LLIDD+QF K Q EF H N+LL Sbjct: 177 AYLRSERFVADMVKALQLNAINEFKRYYRSVDALLIDDIQFFARKERSQEEFFHTFNALL 236 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + +QV+ DR P E+ ++ R++SR G++V + + E R +IL + + E Sbjct: 237 EGGQQVIVTCDRFPKEIVDMEERLKSRFGWGLTVMVEPPELETRVAIL-----MKKAEQV 291 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 + ++ E +A+ + ++ REL+GA ++ F +T E L L+ K Sbjct: 292 NVKLSSEAAFFIAQKIRSNVRELEGALRLVIANAHFTGSEITPPFIRESLKDLLAL-HEK 350 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ I++IQR VA++Y I DLLS RR RTV RPRQVAM L+K +T S PEIG FG R Sbjct: 351 QVSIDNIQRTVAEYYKIKVADLLSKRRTRTVTRPRQVAMSLAKELTNHSLPEIGDAFGGR 410 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTVLHA +K+ ++ ETD ++++ + RL++ Sbjct: 411 DHTTVLHACKKIVELQETDPGIREDYQNFMRLLT 444 >gi|159035675|ref|YP_001534928.1| chromosomal replication initiator protein DnaA [Salinispora arenicola CNS-205] gi|157914510|gb|ABV95937.1| chromosomal replication initiator protein DnaA [Salinispora arenicola CNS-205] Length = 591 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 123/350 (35%), Positives = 196/350 (56%), Gaps = 12/350 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G+ L+ +++F TF+ GSSNR A A+ ++AE + Y NPLFI+ S GLGKTHLL Sbjct: 250 GNRLNPKYMFETFVIGSSNRFAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLH 304 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + V Y++ E F F +++RD+ + R++D+LLIDD+QFL+ + Sbjct: 305 AIGHYATTLGNAHSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENR 364 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E R Sbjct: 365 ERTQEEFFHTFNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRI 424 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +IL+ + A + L +VL +A V+ S REL+GA ++ S + + Sbjct: 425 AILQKKAAQER-----LFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSL 479 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+E+L + G ++ + I A ++ +S DL + R R +V RQVAMYL + + Sbjct: 480 AEEVLRDFIPDGAGPEITADQIMVATADYFGVSLEDLRGHSRSRVLVNARQVAMYLCREL 539 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S P IG+ FG RDHTTV+HA RK+ + + +L ++ L I + Sbjct: 540 TDLSLPRIGQAFGGRDHTTVMHADRKIRQQMAERRSLYNQIAELTNRIKQ 589 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 39/92 (42%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++T + L +++ ++ + + +++ + LSVP F + I++R Sbjct: 5 TDLAAVWTATTDELADEIISAQQRAYLRLTRLRAIVEDTALLSVPDAFTRDVIESRLRPA 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTAS 124 IT+ R V + VR + T + Sbjct: 65 ITEALTRRLGRPIQVAVTVRVTEDGASRPTGT 96 >gi|331007619|ref|ZP_08330761.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] gi|330418559|gb|EGG93083.1| Chromosomal replication initiator protein DnaA [gamma proteobacterium IMCC1989] Length = 584 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 140/403 (34%), Positives = 230/403 (57%), Gaps = 14/403 (3%) Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 S I + + + S SP ++P N + S + S S L+ Sbjct: 193 GSHIPSSGMDISDGQISSYSAVGDSPLERGITPANVD-RNSTVRQSSVEGSLQHRSALNK 251 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 F F +F+EG SN++ L AAQ + E Y NPLFI+ VGLGKTHL+ A+ N Sbjct: 252 SFTFDSFVEGKSNQMGLAAAQQVVENPGGSY-----NPLFIYGGVGLGKTHLMHAVGNEM 306 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 +R PN ++VYL +E F+ A++ N + K R++D LLIDD+QF GK Q E Sbjct: 307 ARRNPNAKIVYLHSERFVADMVKALQLNAINDFKRYYRSVDALLIDDIQFFAGKDRSQEE 366 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+LL+ +Q++ DR P + +L+ R++SR G+++ + + E R +IL Sbjct: 367 FFHTFNALLEGNQQIILTCDRYPKVINNLEERLKSRFGWGLTIEVEPPELETRAAIL--- 423 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLS 398 + + + K++++ + +A+ V ++ REL+GA +++ +F +T ++ E L Sbjct: 424 --LKRAAEIKIDLSYDAAFFIAQRVRSNVRELEGALKRVIANATFTQRPITVDLVKEALK 481 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ K++ I +IQ++V ++Y + +DLLS RR R+V RPRQVAM L+K +T S P Sbjct: 482 DLLALQ-DKQVSIGNIQKVVGEYYKVKMSDLLSKRRSRSVARPRQVAMSLAKELTNHSLP 540 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 EIG FG RDHTTVLHA RK++++ + D ++++++ L+RL++ Sbjct: 541 EIGDAFGGRDHTTVLHACRKIKELCDVDTEIEQDLKNLQRLLT 583 Score = 80.9 bits (198), Expect = 5e-13, Method: Composition-based stats. Identities = 19/116 (16%), Positives = 43/116 (37%), Gaps = 7/116 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETITK 95 ++ L+ ++ + +W + L + + L P F+ W+ +++L+ I + Sbjct: 5 VWQKCLLSLQQELSSQQFNTWIRPLTVDDSIESPHDFCLLAPNRFILDWVNDKFLQRIKE 64 Query: 96 LFQEEHS-----RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 L Q S V + V + P + S+P + K + S + Sbjct: 65 LVQHYFSAEKMPSPNTVTLKVSAELQPRFQSKTSAPVMLKDNHATVEHESSQLSQS 120 >gi|302864509|ref|YP_003833146.1| chromosomal replication initiator protein DnaA [Micromonospora aurantiaca ATCC 27029] gi|302567368|gb|ADL43570.1| chromosomal replication initiator protein DnaA [Micromonospora aurantiaca ATCC 27029] Length = 607 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 129/400 (32%), Positives = 206/400 (51%), Gaps = 27/400 (6%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISP---------------VFGSPLDSRFVF 164 E + P+ + P + P G P G+ L+ +++F Sbjct: 216 ESPPADPAPMRGLPRDGATDNGPGRGGADHHRPGGGGQADRRLPGGTESGGNRLNPKYMF 275 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+ GSSNR A A+ ++AE + Y NPLFI+ S GLGKTHLL AI + + Sbjct: 276 ETFVIGSSNRFAHAASVAVAESPAKAY-----NPLFIYGSSGLGKTHLLHAIGHYATTLG 330 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 V Y++ E F F +++RD+ + R++D+LLIDD+QFL+ + Q EF H Sbjct: 331 NARSVRYVSTEEFTNDFINSLRDDKTSAFQRRYRDVDILLIDDIQFLENRERTQEEFFHT 390 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ + D E R +IL+ + A Sbjct: 391 FNTLHNANKQIVITSDRSPKQLATLEDRLRTRFEWGLLADIQPPDLETRIAILQKKAAQE 450 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVN 402 + L +VL +A V+ S REL+GA ++ S + +A+E+L + Sbjct: 451 R-----LFAPPDVLEFIASRVSNSIRELEGALIRVTAFASLTRSSVELSLAEEVLRDFIP 505 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 G ++ + I A ++ +S DL + R R +V RQVAMYL + +T S P IG+ Sbjct: 506 DGAGPEITADQIMVSTADYFGVSLEDLRGHSRSRVLVNARQVAMYLCRELTDLSLPRIGQ 565 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG RDHTTV+HA RK+ + + +L ++ L I + Sbjct: 566 AFGGRDHTTVMHADRKIRQQMAERRSLYNQIAELTNRIKQ 605 Score = 58.5 bits (140), Expect = 2e-06, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 53/130 (40%), Gaps = 1/130 (0%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + +++T + L +++ ++ + + +++ + LSVP F + I++R Sbjct: 5 TDLAAVWTATTDELADEIISAQQRAYLRLTRLRAIVEDTALLSVPDAFTRDVIESRLRPA 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 IT+ R V + VR PS + A + + P+ + + +P+ Q S Sbjct: 65 ITEALSRRLGRPIQVAVTVRVSDDPSA-RPAGTVYRSGPEPLPEHDAAAPLPGFDQPASA 123 Query: 153 VFGSPLDSRF 162 + + Sbjct: 124 FPSPRPEPGY 133 >gi|323465558|gb|ADX69245.1| DNA-directed DNA replication initiator protein [Lactobacillus helveticus H10] Length = 469 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 139/476 (29%), Positives = 234/476 (49%), Gaps = 24/476 (5%) Query: 29 RCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIK 86 C + + + + ++ + Y +WF+ K S N + + V K + + Sbjct: 12 ECTLFDIKKFWQHFNDEMRARFNEVAYNAWFKNTKPISYNKNTHELKILVQNPVTKGYWE 71 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 + + LP + ++ S ++ + Sbjct: 72 KNLSSQLIQSAYGYAGM----------EILPVFQINENNDSPERIVTPEPRYAIQLRQEK 121 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + L+ ++ F F++G N++A AA ++A+ Y NPLFI VG Sbjct: 122 RAPKQFTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHL+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+D Sbjct: 177 LGKTHLMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVD 236 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + Sbjct: 237 DIQFFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEIT 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D E R +IL+ + E L I++ L ++A V T+ REL+GA ++ + Sbjct: 297 PPDLETRIAILRR-----KAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIE 351 Query: 386 P-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + +A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+ Sbjct: 352 RADINVNLAREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQI 411 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 AMYLS+ +T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK++I Sbjct: 412 AMYLSRELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQIKTDTEIKSAVFDLKQMI 467 >gi|229551104|ref|ZP_04439829.1| DNA-directed DNA replication initiator protein [Lactobacillus rhamnosus LMS2-1] gi|229315565|gb|EEN81538.1| DNA-directed DNA replication initiator protein [Lactobacillus rhamnosus LMS2-1] Length = 468 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 140/470 (29%), Positives = 243/470 (51%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA+ + + + Sbjct: 22 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTQDKLEIEVPASLHKAYWEKNLVTKV 81 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + E ++ V V + E L P +T+ + Q ++ Sbjct: 82 VEGVYEFA------QLEVDPVIMTKDE----------LQPASTHQHQVTDDDDDQQLTFK 125 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F F+ G N++A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 126 AKTHLNPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTY-----NPLFIYGGVGLGKTHLM 180 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N ++ P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 181 QAIGNLVLENNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGD 240 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E R Sbjct: 241 KEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETR 300 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+N + L+I ++ L ++A + ++ R+L+GA ++ + +T Sbjct: 301 IAILRN-----KANAEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTS 355 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMYL++ Sbjct: 356 LAADALKALKLDDRSGQLTIPQILDAVAKYFQVTVQDLKGKKRVKQIVIPRQIAMYLARE 415 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ G +DHTTV+HA K+ + T+ LK V L+ ++ Sbjct: 416 MTDNSLPKIGQEIGGKDHTTVIHAHEKIMAAMTTNEDLKAHVVELRNILK 465 >gi|167627066|ref|YP_001677566.1| chromosomal replication initiation protein [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|241667603|ref|ZP_04755181.1| chromosomal replication initiation protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|189044639|sp|B0TWF7|DNAA_FRAP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|167597067|gb|ABZ87065.1| chromosomal replication initiator protein DnaA [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 491 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 151/484 (31%), Positives = 245/484 (50%), Gaps = 48/484 (9%) Query: 54 VYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR- 112 Y +W + + + + + + K IK++Y E I+ QE H +E + Sbjct: 19 EYKTWIKPIHVEQ-NNYLFTIYCNNEYFKKHIKSKYGEIISSTIQEFHDGDLLIEYSNKK 77 Query: 113 SVALPSVEKTASSPSIT---------KLSPINTNISKSP--------------------- 142 S E T+ P K T++++ P Sbjct: 78 FSGEKSPEVTSVGPQANFFNQKNVEIKDDSEETSLNQEPKKSQKKLSSKNSASQELFGFD 137 Query: 143 ---IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +I K FG PL ++VF +F+ G +N++A AA ++ + NPL Sbjct: 138 EAMLITDKDDQEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPL 192 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI+ GLGKTHL+QAI N + + PN R++Y +E F+ + ++IR + R+ Sbjct: 193 FIYGGSGLGKTHLMQAIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRS 252 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR Sbjct: 253 ADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGY 312 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + + D E R +IL + + D + E +A V T+ REL+GA N++ Sbjct: 313 GLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRV 367 Query: 379 VFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + F T E+A L ++ KK++I++IQ++VA Y I DL SN+R R Sbjct: 368 LTTSKFNHKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRN 426 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + RPRQ+AM L++ +T S PEIG FG RDHTTV+HAV+ + K+ +++ ++ + ELL Sbjct: 427 IARPRQIAMSLARELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTSISDDYELLL 486 Query: 498 RLIS 501 IS Sbjct: 487 DKIS 490 >gi|148271179|ref|YP_001220740.1| chromosomal replication initiation protein [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166201875|sp|A5CLT3|DNAA_CLAM3 RecName: Full=Chromosomal replication initiator protein DnaA gi|147829109|emb|CAN00006.1| chromosomal replication initiator protein dnaA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 477 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 133/474 (28%), Positives = 230/474 (48%), Gaps = 17/474 (3%) Query: 35 CESIFTIVSSRL--KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +I+ V + L +++ P ++ + ++ V+ ++L VP + + ++ R Sbjct: 8 THAIWQKVLAALTADDRITPQLHG-FISLVEPKGVMTGTLYLEVPNDLTRGMLEQRIRVP 66 Query: 93 ITKLFQ--EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + +E + + I+V P+ + I+ G Sbjct: 67 LLNAIGSLDEAAGVSNFAIVVNPEIAQDAFAQHPEPAAEQPYIETPTITAPTDNPGLPAS 126 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 S L+ ++ F TF+ G SNR A V NPLFI+ GLGKT Sbjct: 127 PSRGDSRLNPKYGFDTFVIGGSNRF-----AHAAAVAVAEAPAKAYNPLFIYGDSGLGKT 181 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI + +I P +RV Y+++E F F ++I +N + + R+ D+LLIDD+QF Sbjct: 182 HLLHAIGHYAISLYPGIRVRYVSSEEFTNDFINSIANNRSSLFQSRYRDNDILLIDDIQF 241 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQGK Q F H N+L D KQVV +D PP L + R+RSR + G+ + D Sbjct: 242 LQGKDSTQEAFFHTFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGLITDVQAPDL 301 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL+ + + KL + +++L ++A VT++ REL+G ++ S + Sbjct: 302 ETRIAILRK-----KAQSEKLQVPDDILEYMATKVTSNIRELEGTLIRVTAFASLNKTPV 356 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + +L L+ E + DI A ++ ++ +DL + R + V RQ+AMYL Sbjct: 357 DLALVQTVLKDLITLDEDNVIAPVDIINHTAAYFKLTVDDLYGSSRSQAVATARQIAMYL 416 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IG+ FG+RDHTTV++A +K+ ++++ ++ +V L I + Sbjct: 417 CRELTNLSLPKIGQLFGNRDHTTVMYANKKITELMKERRSIYNQVTELTSRIKQ 470 >gi|225025478|ref|ZP_03714670.1| hypothetical protein EIKCOROL_02378 [Eikenella corrodens ATCC 23834] gi|224941762|gb|EEG22971.1| hypothetical protein EIKCOROL_02378 [Eikenella corrodens ATCC 23834] Length = 510 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 137/520 (26%), Positives = 234/520 (45%), Gaps = 62/520 (11%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + L++ + Y SW + L + P+ F+ ++ RY Sbjct: 1 MTLDQFWPQCLHHLRHTLPAKQYQSWIEPLSVGEGASGEWVVYAPSRFVLNMLRTRYATE 60 Query: 93 ITKLFQEEHSRIQ---------GVEILVRSVALPSVEKTASSPSITKLSPINTN------ 137 I+KL E G P A++P P T Sbjct: 61 ISKLLAERLPENTPTLRFEQGKGKHYAPADKPAPVRTAKAAAPVEQTGKPAATQHVDKRS 120 Query: 138 ----------------------------------ISKSPIILGKQTISPVFGSPLDSRFV 163 +KS ++ + L + Sbjct: 121 ALEIVQSRLESLGINPQAEPSGQSTPAKPAAKPAQAKSTAKREERQQQRYAQTNLSPEYT 180 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F T +EG NR+A+ AA+SIAE Y NP F++ S GLGKTHL QA+ N ++ Sbjct: 181 FDTLVEGKGNRLAVAAARSIAENPGKNY-----NPFFLYGSTGLGKTHLAQAVGNELLRL 235 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCH 282 +P +V Y+ AE F+ A R++ + + D L+IDD+QF++GK EF H Sbjct: 236 KPEAKVYYMHAEDFVRGMIQAFRNHAHDAFRQQYKPYDFLIIDDIQFIKGKDRSMEEFFH 295 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAI 342 L N KQ++ D P++++ +D R++SR G+++ L + EMR IL+ Sbjct: 296 LYNHCHHHKKQIILTCDVLPTKIDDMDDRLKSRFSWGLTLELEPPELEMRVEILQK---- 351 Query: 343 SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLV 401 + + + + EE +A + ++ REL+GAF ++ R F + E+A E L +V Sbjct: 352 -KADSVGVELKEEAAFFIATHIRSNVRELEGAFKRVEARSRFEHKPIDVELATEALQDIV 410 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 K + + I VAK+Y I DL+ +R +++VRPR +A+ L++ +T S+ +IG Sbjct: 411 AGNF-KPINLPLIMDAVAKYYGIRTADLIGKKRAQSIVRPRHLAIKLARELTTHSYEDIG 469 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + FG RDH+TVL++V+K +++ + D + ++ E L +I Sbjct: 470 KAFGGRDHSTVLNSVKKADELRQEDAEIAQDYEKLLIIIK 509 >gi|295425825|ref|ZP_06818506.1| DNA-directed DNA replication initiator protein [Lactobacillus amylolyticus DSM 11664] gi|295064518|gb|EFG55445.1| DNA-directed DNA replication initiator protein [Lactobacillus amylolyticus DSM 11664] Length = 459 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 138/472 (29%), Positives = 242/472 (51%), Gaps = 25/472 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + + ++ + Y +WF+ K S N + ++V K + + Sbjct: 8 DIDKFWQHFNDEMRERFNEVAYNAWFKNTKPLSYDKNSHELKIAVQNPVSKGYWEKNLSS 67 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + G+EIL P+ + + ++P + + I +Q Sbjct: 68 QLIQSAYGYA----GIEIL------PTFQIEGDTGPERIVTPEPRHEIQQNIPQPRQD-E 116 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 117 FAKDLKLNDKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 171 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN ++VY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 172 LMQAIGHQMLAERPNAKIVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFF 231 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 232 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 291 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 292 TRIAILRK-----KAEADGLTIDDNTLDYIASQVDTNIRELEGALVKVEAHATIEKEDIN 346 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A + L+ L + + ++I IQ +VA ++ S +L +RVR +V PRQVAMYLS Sbjct: 347 VNLARDALADLKLVQKNRGLQISKIQEVVANYFQTSIAELKGKKRVRQIVVPRQVAMYLS 406 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IG+ FG +DHTTV+HA K+++ ++TD +K + L++++ Sbjct: 407 RELTDASLPKIGQEFGGKDHTTVMHAYEKIQQQIKTDADIKSAIFDLRQMLD 458 >gi|315037231|ref|YP_004030799.1| chromosomal replication initiation protein [Lactobacillus amylovorus GRL 1112] gi|325955722|ref|YP_004286332.1| chromosomal replication initiation protein [Lactobacillus acidophilus 30SC] gi|312275364|gb|ADQ58004.1| chromosomal replication initiation protein [Lactobacillus amylovorus GRL 1112] gi|325332287|gb|ADZ06195.1| chromosomal replication initiation protein [Lactobacillus acidophilus 30SC] gi|327182550|gb|AEA30997.1| chromosomal replication initiation protein [Lactobacillus amylovorus GRL 1118] Length = 455 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 239/471 (50%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + E + + ++ + Y +WF+ K S + + V K + + Sbjct: 3 DIEKFWQHFNDEMRARFNEVAYNAWFKNTKPISYDKKTHELQILVQNPVAKGYWEKNLSS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + G+EIL + + + + +P +I P +Q + Sbjct: 63 QLIQSAYGYA----GIEIL----PVFKISEDSDTPERIVTPEPQHDIRVQPRNREQQEFT 114 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 115 KDLK--LNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAIGHQMLLERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 288 TRIAILRR-----KAESEGLTIDDNTLDYIASQVDTNIRELEGALVKVQAYATIEKADID 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS Sbjct: 343 VNLAREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK+++ Sbjct: 403 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKTDADIKTAVFDLKQML 453 >gi|311112571|ref|YP_003983793.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa ATCC 17931] gi|310944065|gb|ADP40359.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa ATCC 17931] Length = 553 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 133/386 (34%), Positives = 205/386 (53%), Gaps = 16/386 (4%) Query: 123 ASSPSITKLSPINTNISKSPIILGKQTISPVFG----SPLDSRFVFSTFIEGSSNRVALT 178 ++ P+ + SP T SP +S G + L+ + F TF+ G SNR A Sbjct: 172 SAVPTQSISSPAETEDISSPATDTHTAVSSDSGWDSSARLNPNYTFDTFVIGQSNRFAHA 231 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +++E + Y NPLFI+ GLGKTHLL AI + + P+LRV Y+ +E F Sbjct: 232 AAFAVSESPAQAY-----NPLFIYGDSGLGKTHLLHAIGHYAKHLFPSLRVRYVNSEEFT 286 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 F ++IRD+ + K RN+D+LLIDD+QFL GK Q EF H N+L + KQVV Sbjct: 287 NDFINSIRDDEGSSFKQIYRNVDMLLIDDIQFLAGKEHTQEEFFHTFNALHNHQKQVVIT 346 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +D PP +L R+RSR + G+ + + E R +IL+ + + LN+ ++V+ Sbjct: 347 SDLPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAILRK-----KAQSESLNVPDDVM 401 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQR 416 ++A +T + REL+GA ++ S + +A+ +L L+ ++ + Sbjct: 402 EYIASHITANIRELEGALIRVTAFASLNKQPVDVALAEVVLKDLITDAGDTEITSGQVLA 461 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 A +++++ DL S R RT+ RQ+AMYL + +T S P IG+ G RDHTTV+HAV Sbjct: 462 TTASYFDVTLEDLRSKSRTRTLTNARQIAMYLLRELTDMSLPRIGQELGGRDHTTVMHAV 521 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 RKV + T +V L I + Sbjct: 522 RKVGAQMAERRTTFNQVTDLTNKIKQ 547 >gi|227487662|ref|ZP_03917978.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092356|gb|EEI27668.1| chromosomal replication initiation protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 527 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 140/514 (27%), Positives = 246/514 (47%), Gaps = 44/514 (8%) Query: 19 EKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVY---------ASWFQRLKFHSVLH 69 E+TP D L + E ++ V + L + + S+ + + +V+ Sbjct: 19 ERTPAAVTD---LSSSPEQLWRDVLTTLTTREKEPDFPFAPISQSNRSYLRLTRPLAVVQ 75 Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV----ALPSVEKTASS 125 + LS P K ++ + + +++E + I V +LP ++ Sbjct: 76 GHLLLSTPHKLAKRALEGETGQAVALVWEEVTGTPINLAISVDPSLVDDSLPPTSTPETA 135 Query: 126 PSITKL---------------SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 PS+T + + + +P S L+ + F +F+ G Sbjct: 136 PSVTPPRVRVTRPRPPEPAPEPTPVPAVPPNYTPSTQPKQAPAANSTLNPKHTFESFVIG 195 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 SN+ + AA ++AE + Y NPL+I GLGKTHLL A N +++ P +RV+ Sbjct: 196 KSNQFSQAAAFAVAESPAEAY-----NPLYIWGGSGLGKTHLLHATGNYALQLHPGIRVM 250 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLD 289 Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Q EF H N+L Sbjct: 251 YVSSEEFTNDYINSVRDDKQESFKHRYRNLDILMVDDIQFLEGKEGTQEEFFHTFNALHQ 310 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + KQ++ ++DRPP L +L+ R+R+R Q G+ + D E R +IL+ + Sbjct: 311 ANKQIILSSDRPPQNLVTLEDRLRTRFQAGLITDIQPPDLETRIAILEK-----KAIAEH 365 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKK 408 + ++ + L +A S R L+GA ++ S +T ++ E LS L+ T + + Sbjct: 366 VQVDRDSLTEIATPFPGSIRSLEGALIRVTAFASLTHRQITPDLVREALSDLIGTEQNVE 425 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + DI A+ +N+ + L + R V RQ+AMYL + T S P+IG FG +D Sbjct: 426 ITPTDIIAETARFFNLPVSQLRGKTKTRPVSHARQLAMYLCREFTSLSLPKIGAEFG-KD 484 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 HTTV++A RK+ K + D +V+ L + I + Sbjct: 485 HTTVMYAERKIGKEMSKDRYTYDQVQQLAQNIKQ 518 >gi|42518085|ref|NP_964015.1| chromosomal replication initiator protein DnaA [Lactobacillus johnsonii NCC 533] gi|61212661|sp|Q74M34|DNAA_LACJO RecName: Full=Chromosomal replication initiator protein DnaA gi|41582369|gb|AAS07981.1| chromosomal replication initiator protein DnaA [Lactobacillus johnsonii NCC 533] gi|329666392|gb|AEB92340.1| chromosomal replication initiator protein DnaA [Lactobacillus johnsonii DPC 6026] Length = 454 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 237/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + ++ +K Y +WF+ K S + ++V + K + + Sbjct: 3 DLDKFWQFFNAEMKKSYSTVAYNAWFKNTKPISFNKKTKEMIIAVESPVAKGYWEKNLAS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + V A +L I + IL + Sbjct: 63 QLIQEAYAYADMEIQPKFEV-----------AGKEGPERLVTPQPRIKTNQEILENRRDE 111 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 112 FAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF Sbjct: 167 LMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFF 226 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 227 SKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 287 TRIAILRK-----KAETDGLAIDDSTLDYIASQVDTNIRELEGALVKVQAHATIEREDIN 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS Sbjct: 342 VDLAKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 402 RELTDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 452 >gi|313157670|gb|EFR57081.1| chromosomal replication initiator protein DnaA [Alistipes sp. HGB5] Length = 460 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 237/468 (50%), Gaps = 18/468 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + R+K Q + + WFQ + + L VP I+ Y+ + + Sbjct: 2 WQNCLDRIKAQTSEEEFVKWFQPIVPLEFDGTNLRLRVPNESYVHQIEKNYIPFLRPIIS 61 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSIT----KLSPINTNISKSPIILGKQTISPVF 154 + + + + V A +V TA + + NI +I G + I + Sbjct: 62 QLYGQQTRLHYAVPRSAAQAVPVTADADTTAISRFNTQTNTANIKNPFVIPGLKKI--II 119 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ F+TFIEG NR+A +A S+A + NPL+I+ + GLGKTH++Q Sbjct: 120 DPQLNPGLTFATFIEGECNRLARSAGMSVAVNPGNN----PFNPLYIYGNSGLGKTHIVQ 175 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + +R P L+V+Y++ F +F +A ++ + + ID+L+IDD+Q L GK Sbjct: 176 AIGHEVRQRHPELQVLYVSMNKFQAQFQTAYKNGEIPDFIHFYQMIDVLIIDDIQELTGK 235 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q+ F ++ N L + KQ++ +D+PP EL+ ++ R+ +R + G+S L D+E + Sbjct: 236 TGTQNAFFNIFNHLQLAGKQLILTSDKPPVELKDIEQRLLTRFKWGLSAQLNTPDHETKL 295 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 I++ + + I+++V+ ++A ++ + RE++GA + LV SF +T + Sbjct: 296 KIIR-----VKAQKLGAQISDDVVAYLADNISANVREIEGALSSLVANASFLGRKITTSL 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E+L V K++ I+ I ++V ++ N+ S R R + + RQ+AMYLSK Sbjct: 351 AKEILKVYVQL-YQKEITIDHIIKVVCEYLNLDFERFNSTERTREIAQARQIAMYLSKQH 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T IG G R+H TVLH+ + V ++ETD +++VE +++ + Sbjct: 410 TKAPLTTIGSAIGGRNHATVLHSCKAVSNLIETDKAFRRQVEEIEKKV 457 >gi|295108627|emb|CBL22580.1| chromosomal replication initiator protein DnaA [Ruminococcus obeum A2-162] Length = 459 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 147/478 (30%), Positives = 256/478 (53%), Gaps = 29/478 (6%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 ++ E+ + + +K VG + +W + LK + V ++++ + VP+ + Sbjct: 1 MDKVIEN-WDKILQTVKADYDVGDVAFNTWLKPLKVYDVRNHVITILVPSEQV------- 52 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + L +++ + V I + E SP +++ + S Sbjct: 53 ---VLINLLNKKYKLLLQVTIC-EITGMEECEVKFISPDEAPKKEVSSYDNASASTAMSD 108 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + L+ +++F TFI G++N+ A AA ++AE Y NPLFI+ GLG Sbjct: 109 IDRRCEEAHLNPKYIFDTFIVGNNNKFAQAAALAVAESPGDTY-----NPLFIYGGAGLG 163 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLI 265 KTHL+ +IA+ I+ N +V+Y+T+E F IR+ ++ RNID+LL+ Sbjct: 164 KTHLMHSIAHYIIEHDENSKVLYVTSEEFTNELIETIRNGNNSAMSKFREKYRNIDVLLV 223 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ GK Q EF H NSL + KQ++ ++D+PP ++E L+ R RSR + G+ + Sbjct: 224 DDIQFIIGKESTQEEFFHTFNSLHSAKKQIIISSDKPPKDMEILEERFRSRFEWGLIADI 283 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 L DYE R +IL ++E NI+EEV+ ++A + ++ REL+GAFN+++ Sbjct: 284 TLPDYETRMAILHK-----KEEMEGYNISEEVIKYIATNIKSNIRELEGAFNKVMASSKL 338 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T E+A++ L +++ E K + + I +VA+HY+++ DL N+R +V PRQ Sbjct: 339 EKKEVTLELAEQALKDIISPNEQKVITPDYIISVVAEHYHVTVADLCGNKRSSKIVMPRQ 398 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AMYL + + S IG+ GDRDHTTV+H + K+E L+ + L+ ++ LK+ I+ Sbjct: 399 IAMYLCRDIIDTSLKTIGKNLGDRDHTTVMHGIEKIENELKVNDNLRNSIDTLKKKIN 456 >gi|191636825|ref|YP_001985991.1| chromosomal replication initiation protein [Lactobacillus casei BL23] gi|226735820|sp|B3W6N4|DNAA_LACCB RecName: Full=Chromosomal replication initiator protein DnaA gi|190711127|emb|CAQ65133.1| Chromosomal replication initiator protein dnaA [Lactobacillus casei BL23] gi|327380862|gb|AEA52338.1| DNA-directed DNA replication initiator protein [Lactobacillus casei LC2W] gi|327384028|gb|AEA55502.1| DNA-directed DNA replication initiator protein [Lactobacillus casei BD-II] Length = 449 Score = 418 bits (1075), Expect = e-114, Method: Composition-based stats. Identities = 135/470 (28%), Positives = 236/470 (50%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA+ + + + Sbjct: 3 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTKDKLEIEVPASLHKAYWEKNLVTKV 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + E ++ V V + E L P + + Q ++ Sbjct: 63 VEGVYEFA------QLEVDPVIMTKDE----------LQPAPATDQRPAVEEDDQNLTFK 106 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F F+ G N++ A + NPLFI+ VGLGKTHL+ Sbjct: 107 AKTHLNPKYTFDRFVIGKGNQM-----AHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N + P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 162 QAIGNLVLDNNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGD 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E R Sbjct: 222 KEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+N + + L+I ++ L ++A + ++ R+L+GA ++ + +T Sbjct: 282 IAILRN-----KADAEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTS 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMYL++ Sbjct: 337 LAADALKALKLDDRSGQLTIPQILNAVAKYFQLTVQDLKGKKRVKQIVIPRQIAMYLARE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ G +DHTTV+HA K+ + TD LK +V L+ ++ Sbjct: 397 MTDNSLPKIGQEIGGKDHTTVIHAHEKIMASMTTDENLKAQVIELRNILK 446 >gi|325294208|ref|YP_004280722.1| Chromosomal replication initiator protein dnaA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064656|gb|ADY72663.1| Chromosomal replication initiator protein dnaA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 469 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 236/473 (49%), Gaps = 35/473 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E + ++ +V P +Y + F+ LK S+ ++ L +K +++ YL I + Sbjct: 2 EKTWDKCLREIRKEVKPQLYKTMFKDLKVVSIDSGVLKLKAKDRIVKEYLEKNYLNVIKE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + +E R V I++ I+ + + + Sbjct: 62 VVSKEFGRQLDVAIVL-------------------AEDIHKPLQLELNLFEVKKRKENLE 102 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F F+ G++N+ A AA ++AE Y NPLFI+ VGLGKTHL+QA Sbjct: 103 SNLNPKYTFENFVVGANNQFAHAAAVAVAENPGKAY-----NPLFIYGGVGLGKTHLMQA 157 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N P+ VVY+T E FM A++++ ++ R +D+LLIDD+QF+ GK Sbjct: 158 IGNFIKNVSPSKTVVYITTESFMNELIDALKNDKMTEFREKYRTVDVLLIDDIQFISGKD 217 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L D+ KQVV +DRPP ++ L R+RSR + G+ + D+E R + Sbjct: 218 GTQIEFFHTFNALYDAGKQVVLTSDRPPKDIPMLTERLRSRFEWGLIADIQPPDFETRIA 277 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+ + E + + + +L +A + ++ R+L+GA +L + + + E+ Sbjct: 278 ILRR-----KAEAEGIEVEDSILKLIANIIKSNIRQLEGALTKLKAKATLEGKPINEELV 332 Query: 394 DELLSHL----VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 EL S + TKK+ IE I+++V + + I + R + + RQ+AMYL+ Sbjct: 333 KELFSETTFTNLKNTSTKKLPIEKIKKVVCEEFKIEMKQMEGTSRKKQIALARQIAMYLA 392 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + + S+ +I F DHTTV+HAV K+E+M + + L + + L+ + E Sbjct: 393 RKLGNFSYSKIASAFNRDDHTTVIHAVHKIEEMRKKNPNLNQIIMELEVRLEE 445 >gi|320532814|ref|ZP_08033591.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 171 str. F0337] gi|320134965|gb|EFW27136.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 171 str. F0337] Length = 533 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 201/378 (53%), Gaps = 19/378 (5%) Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 SP T S +L V S L+ R+ F T++ GSSNR A A ++AE + Y Sbjct: 162 SPGGTGSQNSTGLLTPTAAHDV--SQLNPRYTFDTYVTGSSNRFAHATALAVAEAPARAY 219 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLFI+ GLGKTHLL AI + + P +RV Y+ +E F+ F + +RD Sbjct: 220 -----NPLFIYGGSGLGKTHLLHAIGHYAQTLNPGIRVKYVNSEVFVSDFIACVRDGNQD 274 Query: 252 N-----LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K R +D+LL+DD+QFLQGK EF H NSL S KQVV +D+PP L Sbjct: 275 DGRMEGFKRRYREVDILLVDDIQFLQGKESTLEEFFHTFNSLHSSGKQVVLTSDQPPKAL 334 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 LD R+RSR + G+ + D E R +IL + L++ +VL ++A +T Sbjct: 335 GGLDERLRSRFEWGLLADVQPPDLETRIAILSR-----KGTAEGLDLPFDVLEYIASRIT 389 Query: 366 TSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 T+ REL+GA ++ S + +A+ +L +++ E +++ I A ++ I Sbjct: 390 TNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKDIISDPEGQEITTSLIMAQTADYFGI 449 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + +DL S R RT+V R +AMYL + +T S P+IGR FG RDHTTV+ A +K+ ++ Sbjct: 450 TIDDLCSANRSRTMVSARHIAMYLCRELTDLSLPKIGREFGGRDHTTVMSADKKIRTLMA 509 Query: 485 TDITLKKEVELLKRLISE 502 + +V L I + Sbjct: 510 ERRSTFNQVTELTSRIKQ 527 >gi|291541862|emb|CBL14972.1| chromosomal replication initiator protein DnaA [Ruminococcus bromii L2-63] Length = 452 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 233/474 (49%), Gaps = 34/474 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETI 93 E + ++S K+++ Y +W R++ + +L VP +F ++ Y+ + Sbjct: 5 EDAWKVISDYCKSKITDIAYNTWISRIQPVDLDFDNGTAYLLVPNDFHAQTLRRCYMSLL 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + F+E +E +P + S + I +P+ Sbjct: 65 NEGFEEIFGTKFNIEF-----------------RTPANAPKKSKPSAAASITTSAATAPL 107 Query: 154 FGSPLDS--RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 SP S + F TFI GSSN+ A A ++A SH Y NPLF++ + GLGKTH Sbjct: 108 LQSPDSSSYEYTFDTFIVGSSNKFAHAACLAVATNPSHAY-----NPLFLYGNSGLGKTH 162 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N K P+ + Y+ + F ++R + R D+LL+DD+QF+ Sbjct: 163 LLYAIGNEIKKNDPSKVICYIKGDDFTVELVESLRLAKMNEFRQKYRQADILLVDDVQFI 222 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L D+ KQ+V +DRPP E+++L+ R+RSR + + + D E Sbjct: 223 GGKESTQEEFFHTFNALYDARKQIVLTSDRPPKEIKTLEDRLRSRFEQDLIADIQPPDLE 282 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +I+K + E + I++EV +VA + + R+L+G ++ ++ T Sbjct: 283 TRIAIIKR-----KAELDGVEISDEVCEYVASKIKANIRQLEGTVKKIKAKYYLDGEKPT 337 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS-NRRVRTVVRPRQVAMYL 448 ++S ++N ++ +E I VA+ Y +S +++ S R + R +A+Y+ Sbjct: 338 INSVQGIISDILNNDAPPEVTVERIIDEVARTYGVSADEIRSQKNRSANISNARHIAIYV 397 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 ++ +T S IG FG+R ++T+++ ++KV+KM+E D +K+ ++ + I + Sbjct: 398 TRELTTLSMVAIGEEFGNRHYSTIIYTIQKVQKMMEKDRKVKEIIDDTIKNIRD 451 >gi|198275620|ref|ZP_03208151.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135] gi|198271249|gb|EDY95519.1| hypothetical protein BACPLE_01789 [Bacteroides plebeius DSM 17135] Length = 471 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 237/470 (50%), Gaps = 22/470 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETIT 94 +++ S +K+ V + +WF+ + + + VP+ F +++ +Y+ + Sbjct: 9 ALWNRCLSFIKDNVNATAFKTWFEPIVPLKYEATEKALTIGVPSPFFYEYLEEKYVGLLR 68 Query: 95 KLFQEEHSRIQGVEILVRSVALP----SVEKTASSPSITKLSPI-NTNISKSPIILGKQT 149 +E + + + ++E T S ++ + +P+ N N + +P+ Sbjct: 69 AAIYKEIGEGTELMYSILTDKTNHITVNIEGTKRSSALPEQAPVYNGNKTPNPLQAPAPQ 128 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+ + F FI+G+SN + T A+++A+ + NPLFI+ G+GK Sbjct: 129 ---DLDPHLNPNYNFENFIKGNSNEFSRTVAETVAQNPAR-----TFNPLFIYGPSGVGK 180 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI + P RV+Y++A F ++ ++R N + + ID+L+IDD+Q Sbjct: 181 THLINAIGTRIKELYPEKRVLYVSAHLFQVQYTDSVRTNHFNDFISFYQTIDVLIIDDIQ 240 Query: 270 FLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L D Sbjct: 241 EFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGMEERLLTRFKWGLVAELEKPD 300 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPI 387 E+R +IL+N++ L I E V+ ++A +V S REL+G N L+ + F Sbjct: 301 IELRKNILRNKIKRD-----GLTIPESVISYIAESVNESVRELEGIVNSLLAQSILFKRE 355 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++A ++ V E+K M + DI V +HY I + + R R VV+ RQVAMY Sbjct: 356 IDLDLAQRIVRKAVKCAESKPMTVSDIITKVCEHYKIDETAIHTKTRKREVVQVRQVAMY 415 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 L+K T S +IG+ G++DH TVLHA + V+ ++ D K E+E ++ Sbjct: 416 LAKKHTDTSSSKIGQLIGNKDHATVLHACKIVKDQVDVDKAFKAEIEEIE 465 >gi|227533506|ref|ZP_03963555.1| DNA-directed DNA replication initiator protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239630805|ref|ZP_04673836.1| DNA replication ATPase initiation [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065126|ref|YP_003787149.1| DNA replication ATPase initiation [Lactobacillus casei str. Zhang] gi|227188835|gb|EEI68902.1| DNA-directed DNA replication initiator protein [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239527088|gb|EEQ66089.1| DNA replication ATPase initiation [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300437533|gb|ADK17299.1| DNA replication ATPase initiation [Lactobacillus casei str. Zhang] Length = 449 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 135/470 (28%), Positives = 236/470 (50%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA+ + + + Sbjct: 3 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTKDKLEIEVPASLHKAYWEKNLVTKV 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + E ++ V V + E L P + + Q ++ Sbjct: 63 VEGVYEFA------QLEVDPVIMTKDE----------LQPAPATDQRPAVEEDDQNLTFK 106 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F F+ G N++ A + NPLFI+ VGLGKTHL+ Sbjct: 107 AKTHLNPKYTFDRFVIGKGNQM-----AHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N + P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 162 QAIGNLVLGNNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGD 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E R Sbjct: 222 KEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+N + + L+I ++ L ++A + ++ R+L+GA ++ + +T Sbjct: 282 IAILRN-----KADAEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTS 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMYL++ Sbjct: 337 LAADALKALKLDDRSGQLTIPQILNAVAKYFQLTVQDLKGKKRVKQIVIPRQIAMYLARE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ G +DHTTV+HA K+ + TD LK +V L+ ++ Sbjct: 397 MTDNSLPKIGQEIGGKDHTTVIHAHEKIMASMTTDENLKAQVIELRNILK 446 >gi|325066321|ref|ZP_08124994.1| chromosomal replication initiator protein DnaA [Actinomyces oris K20] Length = 559 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 201/378 (53%), Gaps = 19/378 (5%) Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 SP +T +L V S L+ R+ F T++ GSSNR A A ++AE + Y Sbjct: 188 SPGSTGPQNPTGLLTPTAAHDV--SQLNPRYTFDTYVTGSSNRFAHATALAVAEAPARAY 245 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLFI+ GLGKTHLL AI + + P +RV Y+ +E F+ F + +RD Sbjct: 246 -----NPLFIYGGSGLGKTHLLHAIGHYAQTLNPGIRVKYVNSEVFVSDFIACVRDGNQD 300 Query: 252 N-----LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K R +D+LL+DD+QFLQGK EF H NSL S KQVV +D+PP L Sbjct: 301 DGRMEGFKRRYREVDILLVDDIQFLQGKESTLEEFFHTFNSLHSSGKQVVLTSDQPPKAL 360 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 LD R+RSR + G+ + D E R +IL + L++ +VL ++A +T Sbjct: 361 GGLDERLRSRFEWGLLADVQPPDLETRIAILSR-----KGTAEGLDLPFDVLEYIASRIT 415 Query: 366 TSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 T+ REL+GA ++ S + +A+ +L +++ E +++ I A ++ I Sbjct: 416 TNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKDIISDPEGQEITTSLIMAQTADYFGI 475 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 + +DL S R RT+V R +AMYL + +T S P+IGR FG RDHTTV+ A +K+ ++ Sbjct: 476 TIDDLCSANRSRTMVSARHIAMYLCRELTDLSLPKIGREFGGRDHTTVMSADKKIRTLMA 535 Query: 485 TDITLKKEVELLKRLISE 502 + +V L I + Sbjct: 536 ERRSTFNQVTELTSRIKQ 553 >gi|319955761|ref|YP_004167024.1| chromosomal replication initiator protein dnaa [Nitratifractor salsuginis DSM 16511] gi|319418165|gb|ADV45275.1| chromosomal replication initiator protein DnaA [Nitratifractor salsuginis DSM 16511] Length = 442 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 134/468 (28%), Positives = 237/468 (50%), Gaps = 39/468 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETIT 94 ++ + +L+ ++ P+ Y + + L + + V P F WI++ YL T+ Sbjct: 2 NLGEKIIQKLRKEIPPEEYERYLRHLHYDDEASRVDRVVFRAPNIFAARWIRSNYLNTLA 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 LF+ E +EI V + SP + Sbjct: 62 HLFEIESGIRPEIEIQVGGTSRAPKATPRKSPENKSTA---------------------- 99 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ F F +FI GSSN+ A T A S+AE Y NPLFI+ VGLGKTHLLQ Sbjct: 100 TALLNPSFTFESFIVGSSNQFAYTTALSVAEKPGKLY-----NPLFIYGGVGLGKTHLLQ 154 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N +++ +V+Y T E+F+ +F S ++ ++ RN DLLLIDD+QFL K Sbjct: 155 AIGNYRLQQ--GDQVIYTTLEHFLNKFLSHLQSQTMEKFREHYRNCDLLLIDDIQFLSRK 212 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q E H N L ++ KQ+V +DRPP ++ L+ R+R+R + G+ + + E + Sbjct: 213 EKTQDELFHTFNELHNAGKQIVMTSDRPPKKIAFLEERLRTRFEWGLQADIQPPELETKI 272 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEI 392 +I++ + + + +++E++ ++A + + RE++G +L + +T E Sbjct: 273 AIIQKKCELD-----GIRLDQEIIHYIATHMGDNIREIEGTLIRLNAMSAMLNQPITLEF 327 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + + + + + I+DI ++V+K N+ +D+ S +R + VV R++ +YL++ + Sbjct: 328 ARNAIKDQLKEKQ-ENISIDDIVKIVSKELNVKPSDIRSKKRNKNVVNARRIVIYLARNL 386 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TP S P+I FG +DH+ V HA+RK+ ++ E+D K ++ L + Sbjct: 387 TPNSMPQIALYFGMKDHSAVSHALRKINEIAESDENFKVLLDELSHKV 434 >gi|116493575|ref|YP_805309.1| chromosomal replication initiation protein [Lactobacillus casei ATCC 334] gi|122264962|sp|Q03D55|DNAA_LACC3 RecName: Full=Chromosomal replication initiator protein DnaA gi|116103725|gb|ABJ68867.1| DNA replication ATPase initiation [Lactobacillus casei ATCC 334] Length = 449 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 135/470 (28%), Positives = 236/470 (50%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA+ + + + Sbjct: 3 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTKDKLEIEVPASLHKAYWEKNLVTKV 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + E ++ V V + E L P + + Q ++ Sbjct: 63 VEGVYEFA------QLEVDPVIMTKDE----------LQPAPATDQRPAVEEDDQNLTFK 106 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F F+ G N++ A + NPLFI+ VGLGKTHL+ Sbjct: 107 AKTHLNPKYTFDHFVIGKGNQM-----AHAAALAVAEAPGTTYNPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N + P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 162 QAIGNLVLGNNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGD 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E R Sbjct: 222 KEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+N + + L+I ++ L ++A + ++ R+L+GA ++ + +T Sbjct: 282 IAILRN-----KADAEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTS 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMYL++ Sbjct: 337 LAADALKALKLDDRSGQLTIPQILNAVAKYFQLTVQDLKGKKRVKQIVIPRQIAMYLARE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ G +DHTTV+HA K+ + TD LK +V L+ ++ Sbjct: 397 MTDNSLPKIGQEIGGKDHTTVIHAHEKIMASMTTDENLKAQVIELRNILK 446 >gi|328468760|gb|EGF39731.1| chromosomal replication initiation protein [Lactobacillus helveticus MTCC 5463] Length = 455 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 236/471 (50%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + E + + ++ + Y +WF+ K N + + V K + + Sbjct: 3 DIEKFWQHFNDEMRARFNEVAYNAWFKNTKPIFYNKNTHELKILVQNPVAKGYWEKNLSS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + G+EIL P + ++ S + + + Sbjct: 63 QLIQSAYGYA----GIEIL------PVFQINENNDSPELIVTPEPRYAIQLRQEKRAPKQ 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 113 FTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 288 TRIAILRR-----KAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADIN 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ IS +L +RVR +V PRQ+AMYLS Sbjct: 343 VNLAREALVDLKLVQKNRGLQISKIQEVVANYFQISTAELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK++I Sbjct: 403 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQIKTDTEIKSAVFDLKQMI 453 >gi|326772843|ref|ZP_08232127.1| DNA-directed DNA replication initiator protein [Actinomyces viscosus C505] gi|326637475|gb|EGE38377.1| DNA-directed DNA replication initiator protein [Actinomyces viscosus C505] Length = 601 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 194/354 (54%), Gaps = 17/354 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ R+ F T++ GSSNR A A ++AE + Y NPLFI+ GLGKTHLL A Sbjct: 252 SQLNPRYTFDTYVTGSSNRFAHATALAVAEAPARAY-----NPLFIYGGSGLGKTHLLHA 306 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQF 270 I + + P +RV Y+ +E F+ F + +RD + K R +D+LL+DD+QF Sbjct: 307 IGHYAQTLNPGIRVKYVNSEVFVSDFIACVRDGNQDDGRMEGFKRRYREVDILLVDDIQF 366 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQGK EF H NSL S KQVV +D+PP L LD R+RSR + G+ + D Sbjct: 367 LQGKESTLEEFFHTFNSLHSSGKQVVLTSDQPPKALGGLDERLRSRFEWGLLADVQPPDL 426 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL + L++ +VL ++A +TT+ REL+GA ++ S + Sbjct: 427 ETRIAILSR-----KGTAEGLDLPFDVLEYIASRITTNIRELEGALIRVTAFASLNKQPV 481 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 +A+ +L +++ E +++ I A ++ I+ +DL S R RT+V R +AMYL Sbjct: 482 DQTLAEMVLKDIISDPEGQEITTSLIMAQTADYFGITIDDLCSANRSRTMVSARHIAMYL 541 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IGR FG RDHTTV+ A +K+ ++ + +V L I + Sbjct: 542 CRELTDLSLPKIGREFGGRDHTTVMSADKKIRTLMAERRSTFNQVTELTSRIKQ 595 >gi|325278758|ref|YP_004251300.1| Chromosomal replication initiator protein dnaA [Odoribacter splanchnicus DSM 20712] gi|324310567|gb|ADY31120.1| Chromosomal replication initiator protein dnaA [Odoribacter splanchnicus DSM 20712] Length = 474 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 130/480 (27%), Positives = 239/480 (49%), Gaps = 20/480 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E ++I+ S ++ QV P+ + + F+ ++ +++ + V + ++ ++ Y+ Sbjct: 1 MEKEGKNIWLKCLSLIQKQVLPEKFKTLFEPIRAVRFKDDVLTIQVASAYVYEVLEGEYI 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEK--------TASSPSITKLSPINTNISKSP 142 + + + + V E P+ + + T S Sbjct: 61 DILKSALKAVIGPNAKLAYSVVVERSKPSEPLTTTLASNPVRKPASSTVYLDQTGHSTLK 120 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + + S L+ + ++IEG+ NR+A +A +IA+ NPL I+ Sbjct: 121 NPFERASNQIQIDSQLNPSYTMESYIEGNCNRLARSAGMAIAQKPG----GTAFNPLLIY 176 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHL QAI + PN V+Y++ F +F A+R N + + ID+ Sbjct: 177 GGSGLGKTHLAQAIGLEVKQNFPNKVVLYVSTNIFQTQFTEAVRRNEVNDFLHFYQLIDV 236 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 L++DD+Q L GK Q+ F H+ N L S KQ++ D+ P+ELE ++ R+ SR + G+S Sbjct: 237 LILDDIQELAGKTGTQNTFFHIFNHLHQSGKQLILTCDKAPAELEGMEDRLLSRFRWGLS 296 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + D++ R I+ +++ ++ +EEV+ ++ + V + REL+GA L+ + Sbjct: 297 AEIKAPDFDTRKEIV-----LNKARKDGIDFSEEVIEYICKYVDHNVRELEGAMISLLAQ 351 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 +F LT ++ ++L +V T+++ ++ IQ +V +H+NI L + R R VV+ Sbjct: 352 STFNKRDLTVDVVRDILGKMVK-KPTEELTVDKIQEVVCEHFNIPSELLQTKTRKREVVQ 410 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMY K T S IG + G +DH TVL+A + V ++ETD K +VE ++R + Sbjct: 411 ARQLAMYFCKNYTKYSLSYIGSQIGKKDHATVLYACKAVTDLIETDRNFKIQVEEIQRKL 470 >gi|329944740|ref|ZP_08292819.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 170 str. F0386] gi|328529876|gb|EGF56766.1| replication initiator protein DnaA [Actinomyces sp. oral taxon 170 str. F0386] Length = 380 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 132/380 (34%), Positives = 201/380 (52%), Gaps = 19/380 (5%) Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 SP S +L + V S L+ R+ F T++ GSSNR A A ++AE + Sbjct: 7 AFSPGTAGPQNSAGLLTPTAANDV--SQLNPRYTFDTYVTGSSNRFAHATALAVAEAPAR 64 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLFI+ GLGKTHLL A+ + + P +RV Y+ +E F+ F + +RD Sbjct: 65 AY-----NPLFIYGGSGLGKTHLLHAVGHYAQTLNPGIRVKYVNSEVFVSDFIACVRDGN 119 Query: 250 ALN-----LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 + K R +D+LL+DD+QFLQGK EF H NSL S KQVV +D+PP Sbjct: 120 QDDGRMEGFKRRYREVDILLVDDIQFLQGKESTLEEFFHTFNSLHSSGKQVVLTSDQPPK 179 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L LD R+RSR + G+ + D E R +IL + L++ +VL ++A Sbjct: 180 ALGGLDERLRSRFEWGLLADVQPPDLETRIAILSR-----KGTAEGLDLPFDVLEYIASR 234 Query: 364 VTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 +TT+ REL+GA ++ S + +A+ +L +++ E +++ I A ++ Sbjct: 235 ITTNIRELEGALIRVTAFASLNKQPVDQTLAEMVLKDIISDPEGQEITTSLIMAQTADYF 294 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I+ +DL S R RT+V R +AMYL + +T S P+IGR FG RDHTTV+ A +K+ + Sbjct: 295 GITIDDLCSANRSRTMVSARHIAMYLCRELTDLSLPKIGREFGGRDHTTVMSADKKIRTL 354 Query: 483 LETDITLKKEVELLKRLISE 502 + + +V L I + Sbjct: 355 MAERRSTFNQVTELTSRIKQ 374 >gi|302669375|ref|YP_003829335.1| chromosomal replication initiator protein DnaA1 [Butyrivibrio proteoclasticus B316] gi|302393848|gb|ADL32753.1| chromosomal replication initiator protein DnaA1 [Butyrivibrio proteoclasticus B316] Length = 466 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 128/477 (26%), Positives = 238/477 (49%), Gaps = 32/477 (6%) Query: 34 NCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVP--TNFLKAWIKNRY 89 +S + + ++ + + Y +W L + V N V + +P ++I Y Sbjct: 10 QLKSNWEEIKKSIRIESGITDISYRTWIDPLTVYGVKDNTVMILIPQDNPVALSYISKNY 69 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 ++ E + + ++ + + E + S N + Sbjct: 70 IDFFKVSISEFLGEMVDINFMLNKDIINNEETHEEKNEVNDQSSYLGNSNAE-------- 121 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S L+ ++ F TF+ GS+N+ A +A+ ++AE Y NPLF++ GLGK Sbjct: 122 -----HSNLNPKYRFDTFVVGSNNKFAHSASLAVAESPGISY-----NPLFLYGGPGLGK 171 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC---ALNLKDSLRNIDLLLID 266 THL+ +I + ++ +V+Y+T+E F +IR L++ R +D+L++D Sbjct: 172 THLMHSIGHFVMEHNRRAKVLYVTSEQFTNEVIESIRSGKAESMSKLREKYRTVDVLMVD 231 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N L + KQ++ ++D+PP E+E+L+ R RSR + G+ + Sbjct: 232 DVQFIIGKESTQEEFFHTFNELHQAGKQIILSSDKPPKEMETLEERFRSRFEMGLIADIQ 291 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 DYE R +IL+ E+ +I+ EV+ ++A + ++ REL+GA+N+++ Sbjct: 292 SPDYETRMAILQK-----NAENYGKHIDAEVINYIATNIKSNIRELEGAYNKIIAYSRLN 346 Query: 386 PI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + +T E A E L ++ ++K + + I V + Y + D+ S +R +V PRQV Sbjct: 347 NVDITLENAMEALKDIIYPDKSKVITPQLIIDTVCEQYGSKKEDIFSKKRNSEIVLPRQV 406 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + T S EIG+ G +DHTTV+ + K++K ++ D L K ++++ + ++ Sbjct: 407 IMYLCREHTDASLEEIGKLLGKKDHTTVMSGINKIKKQIKIDEELNKNLDIIMKKLN 463 >gi|227893838|ref|ZP_04011643.1| DNA-directed DNA replication initiator protein [Lactobacillus ultunensis DSM 16047] gi|227864327|gb|EEJ71748.1| DNA-directed DNA replication initiator protein [Lactobacillus ultunensis DSM 16047] Length = 460 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 236/471 (50%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + E + + ++ + Y +WF+ K S + + V K + + Sbjct: 8 DIEKFWQQFNDEMRARFNEVAYNAWFKNTKPISYNKKTHELKILVQNPVAKGYWEKNLSS 67 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + G+EIL P + + + S ++ ++ Sbjct: 68 QLIQSAYGYA----GIEIL------PVFQISETDDSPERIVTPEPQHDIRIRQEKREQKE 117 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 118 FTKDLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 172 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN + VY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 173 LMQAIGHQMLVERPNAKAVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFF 232 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 233 TKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 292 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I+++ L ++A V T+ REL+GA ++ + + Sbjct: 293 TRIAILRR-----KAEAEGLTIDDDTLDYIASQVDTNIRELEGALVKVQAYATIEKADIN 347 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS Sbjct: 348 VNLAREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLS 407 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK+++ Sbjct: 408 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKTDADIKTAVFDLKQML 458 >gi|299143462|ref|ZP_07036542.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517947|gb|EFI41686.1| DNA replication initiator protein, ATPase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 447 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 141/478 (29%), Positives = 256/478 (53%), Gaps = 39/478 (8%) Query: 31 LEVNCESIFTIVSSRLKNQ-VGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKN 87 ++ N +I+ V ++L+ Q + + +WF+ + + I +++VP F++ + N Sbjct: 1 MDSNLSNIWNDVMNKLRQQSMSTVSFDTWFKDMNLKKIDEEKKIFYVTVPIRFIRERLAN 60 Query: 88 RY--LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 L+ I K +E + P+ + II Sbjct: 61 NQSQLKFIKKCIKEVTGC--------------------------EYDPVILTEDEDEIIP 94 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 ++ + + + L+ +++F F+ G SN A AA ++AE + NPLFI+ V Sbjct: 95 LRKKDTLLPETRLNPKYIFENFVVGKSNEFAHAAALAVAEN-YLDPSDAHSNPLFIYGGV 153 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+QAI + ++ PN +++Y+T+E F ++I+ N + ++ R +DLLLI Sbjct: 154 GLGKTHLMQAIGHFVHQQDPNKKILYVTSEQFTNELINSIQTNKNEHFRNKYRKVDLLLI 213 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QF+ K Q EF H N L +S KQ+V +D+PP +++SL+ R+ SR G+ V + Sbjct: 214 DDIQFIADKDRTQEEFFHTFNELHESNKQIVLTSDKPPKDIKSLEERLISRFAWGLVVDI 273 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 G D E R +IL+ S+ + N+ + ++ +A+ V ++ REL+GA ++++ Sbjct: 274 GTPDLETRIAILR-----SKADSEGFNVPDNIINFIAQNVKSNIRELEGALSRIMAYSKL 328 Query: 385 A-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + A +L + NT + K + + I+ +VAK++ I+ D+ S +R R + PRQ Sbjct: 329 TVGEMTEQTAAIVLRDIYNTKKKKVITSKLIKEVVAKNFRITIEDIDSKKRTRNIAYPRQ 388 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AMY+++ +T S P+IG FG RDH+TV+HA K+E + +D +L+ ++ L + I Sbjct: 389 IAMYITRDLTELSLPKIGEEFGGRDHSTVIHAYNKIESDMASDTSLRIKISNLIKEIK 446 >gi|170780463|ref|YP_001708795.1| chromosomal replication initiation protein [Clavibacter michiganensis subsp. sepedonicus] gi|189044633|sp|B0RH69|DNAA_CLAMS RecName: Full=Chromosomal replication initiator protein DnaA gi|169155031|emb|CAQ00127.1| chromosomal replication initiator protein DnaA [Clavibacter michiganensis subsp. sepedonicus] Length = 476 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 135/473 (28%), Positives = 230/473 (48%), Gaps = 16/473 (3%) Query: 35 CESIFTIVSSRL--KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +I+ V + L +++ P ++ + ++ V+ ++L VP + + ++ R Sbjct: 8 THAIWQKVLAALTADDRITPQLHG-FISLVEPKGVMTGTLYLEVPNDLTRGMLEQRIRVP 66 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + A P + I T +P SP Sbjct: 67 LLNAIGSLDEAAGVSNFAIVVNPGIAQDAFAQHPEPAEQPYIETPTITAPTDNPGLPASP 126 Query: 153 VFG-SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 G S L+ ++ F TF+ G SNR A V NPLFI+ GLGKTH Sbjct: 127 SRGDSRLNPKYGFDTFVIGGSNRF-----AHAAAVAVAEAPAKAYNPLFIYGDSGLGKTH 181 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI + +I P +RV Y+++E F F ++I +N + + R+ D+LLIDD+QFL Sbjct: 182 LLHAIGHYAISLYPGIRVRYVSSEEFTNDFINSIANNRSSLFQSRYRDNDILLIDDIQFL 241 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 QGK Q F H N+L D KQVV +D PP L + R+RSR + G+ + D E Sbjct: 242 QGKDSTQEAFFHTFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGLITDVQAPDLE 301 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + + KL + +++L ++A VT++ REL+G ++ S + Sbjct: 302 TRIAILRK-----KAQSEKLQVPDDILEYMATKVTSNIRELEGTLIRVTAFASLNKTPVD 356 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + +L L+ E + DI A ++ ++ +DL + R + V RQ+AMYL Sbjct: 357 LALVQTVLKDLITLDEDNVIAPVDIINHTAAYFKLTVDDLYGSSRSQAVATARQIAMYLC 416 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IG+ FG+RDHTTV++A +K+ ++++ ++ +V L I + Sbjct: 417 RELTNLSLPKIGQLFGNRDHTTVMYANKKITELMKERRSIYNQVTELTSRIKQ 469 >gi|326329129|ref|ZP_08195457.1| putative replication initiator protein [Nocardioidaceae bacterium Broad-1] gi|325953016|gb|EGD45028.1| putative replication initiator protein [Nocardioidaceae bacterium Broad-1] Length = 575 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 207/394 (52%), Gaps = 17/394 (4%) Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPI-----ILGKQTISPVFGSPLDSRFVFSTFIE 169 P +++P ++PI + P+ + V + L+ ++ F TF+ Sbjct: 186 VRPDYADMSTNPPAPPVAPIEEPVPPRPLVPGPPTRASEPSHNVLETRLNPKYTFETFVI 245 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 GSSNR AA +++E Y NPL ++ GLGKTHLL AI + +V Sbjct: 246 GSSNRFPHAAAVAVSEAPGKAY-----NPLLVYGESGLGKTHLLHAIGHYVRSLYSGAKV 300 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLL 288 Y+++E F F +AIRD+ K R++D+LLIDD+QFL+GK Q EF H N+L Sbjct: 301 RYVSSEEFTNEFINAIRDDRQDRFKRRYRDVDVLLIDDIQFLEGKTQTQEEFFHTFNTLH 360 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 ++ KQ+V +DRPP LE+L+ R+R+R + G+ + D E R +IL+ + A+ + Sbjct: 361 NANKQIVLTSDRPPKRLEALEDRLRNRFEWGLITDVQPPDIETRIAILRKKAAMER---- 416 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETK 407 L +VL +A + T+ REL+GA ++ + + +A+ +L L+ G Sbjct: 417 -LTAPPDVLEFIASKIQTNIRELEGALIRVTAFANLNRQDVDLTLAEIVLKDLIPEGGEP 475 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ I A ++ +S ++L R R +V RQ+AMYL + +T S P+IG+ FG R Sbjct: 476 EITAGLIIAQTAAYFGLSIDELTGPSRGRHLVMARQIAMYLCRELTEDSLPKIGKHFGGR 535 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTV++A RK+ ++L + +V L + Sbjct: 536 DHTTVMYAERKINQLLAERRAVFNQVSELTNRVK 569 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 14/136 (10%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + +S +T V + ++ P+ +W + + ++ + + VP +F++ I+ R T+ Sbjct: 13 DLQSAWTRVVA----ELPPNQ-RAWLRDSEPLTLHGSTAIVEVPNDFIRNQIEGRLRGTL 67 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASS---------PSITKLSPINTNISKSPII 144 K E +R + + V + + + + + + N +P Sbjct: 68 EKSLGEIFNREIRIAVTVNPDIEVTPDPDTQAIMISEREIAAADAAAAALQQNAFPNPSA 127 Query: 145 LGKQTISPVFGSPLDS 160 Q++ P L Sbjct: 128 FPHQSVYPTNAPGLIP 143 >gi|238853339|ref|ZP_04643719.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 202-4] gi|238834027|gb|EEQ26284.1| chromosomal replication initiator protein DnaA [Lactobacillus gasseri 202-4] Length = 454 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 236/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + ++ +K Y +WF+ K S + ++V + K + + Sbjct: 3 DLDKFWQFFNAEMKKSYSTVAYNAWFKNTKPISFNKKTKEMIIAVESPVAKGYWEKNLAS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + V A +L I + IL + Sbjct: 63 QLIQEAYAYADMEIQPKFEV-----------AGKEGPERLVTPKPRIKTNQEILEDRRDE 111 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 112 FAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +P+ +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF Sbjct: 167 LMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFF 226 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 227 SKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R +IL+ + E L I+ L ++A V T+ REL+GA ++ + + Sbjct: 287 TRIAILRK-----KAETDGLAIDGSTLDYIASQVDTNIRELEGALVKVQAHATIEREDIN 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS Sbjct: 342 VDLAKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 402 RELTDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 452 >gi|113866032|ref|YP_724521.1| chromosomal replication initiation protein [Ralstonia eutropha H16] gi|123033387|sp|Q0KFR8|DNAA_CUPNH RecName: Full=Chromosomal replication initiator protein DnaA gi|113524808|emb|CAJ91153.1| chromosomal replication initiator protein DnaA [Ralstonia eutropha H16] Length = 588 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 125/364 (34%), Positives = 199/364 (54%), Gaps = 13/364 (3%) Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 +P+ + + + S L+ F F+ G +N++A AA +A Y NPL Sbjct: 235 ATPMPGHQPSDTVHERSRLNPILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPL 289 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 +++ VGLGKTHL+ AI N + P R+ Y+ AE ++ A + K + Sbjct: 290 YLYGGVGLGKTHLIHAIGNFMLLENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHS 349 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +DLLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ +D R+ SR Sbjct: 350 LDLLLIDDIQFFSGKNRTQEEFFYAFEALIANRAQVIITSDTYPKEISGIDDRLISRFDS 409 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + + EMR +IL + + +N+ EEV VA+ + ++ REL+GA ++ Sbjct: 410 GLTVAIEPPELEMRVAIL-----MKKAAAENVNVPEEVAFFVAKHLRSNVRELEGALRKI 464 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + +F +T E+ E L L+ T + +++ +E+IQ+ A YNI D+ S +R Sbjct: 465 LAFSNFHGKDITIEVTREALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPAN 523 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L+ Sbjct: 524 IARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLE 583 Query: 498 RLIS 501 + + Sbjct: 584 QTLK 587 Score = 76.6 bits (187), Expect = 9e-12, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLETI 93 + + +++L+ ++ P + +W + L + + ++ P F W+K+++ I Sbjct: 2 QDFWQAAAAQLERELTPQQFKTWIKPLAPVAFDEETHALRIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 T L E V+ ++ A Sbjct: 62 TALACEYWEAQVSVQFVLDPAA 83 >gi|295687460|ref|YP_003591153.1| chromosomal replication initiator protein DnaA [Caulobacter segnis ATCC 21756] gi|295429363|gb|ADG08535.1| chromosomal replication initiator protein DnaA [Caulobacter segnis ATCC 21756] Length = 491 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 162/471 (34%), Positives = 241/471 (51%), Gaps = 13/471 (2%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++++ V LK ++G + SW + L PT + WI+ I +L Sbjct: 25 AVWSKVCVALKRELGDAAFGSWIAPAILREAASGDIVLVTPTGIARDWIRRSAWRRIGEL 84 Query: 97 FQEEHSRIQGVEILVR--SVALPSVEKTASSPSITKLSPINT--NISKSPIILGKQTISP 152 + + +++ R AL V AS+ T PI +S + + Sbjct: 85 WAANDPTGRRIDLKSRLEFEALAGVYVEASAKPATAAEPIEIVLPVSTDAPAVAPTSAKS 144 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L RF F TF+ G +N A A+ IA + NP+ H G GKTHL Sbjct: 145 PRTQGLQERFTFETFVPGPANEFAHAVARRIA-----NWADGHFNPVLFHGPYGFGKTHL 199 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+A +++ P RVVYLTAE F+ F A+ D K+ LR DLL+IDD+ F+ Sbjct: 200 LNALAWEAMRNAPEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLLIIDDVHFIA 259 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q E H L +L++ ++VV +ADRPPS + +D +RS L G+ L D + Sbjct: 260 GKQSTQEELFHTLTALVEEGRRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRSL 319 Query: 332 RFSILKNRLA-ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILT 389 R IL+ ++ +S + + +VL +A T S REL+GA N L R +T Sbjct: 320 RLGILERKIQTLSAAHGFEPTMRPDVLQFLADRFTDSVRELEGALNTLSARAGEGLSRMT 379 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E +L + +G K++ I+DIQ+ ++HY + + DLLS RR R V RPRQ AM+L+ Sbjct: 380 LEEVQAILRPHLRSG-EKRITIDDIQKATSEHYGMKQADLLSERRNRAVARPRQAAMWLA 438 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T RS P+IGRRFG RDHTTVLHAVR++E + D L +++E + R + Sbjct: 439 KQLTTRSLPDIGRRFGGRDHTTVLHAVRRIEALRAEDSALNQDLETITRKL 489 >gi|158311868|ref|YP_001504376.1| chromosomal replication initiator protein DnaA [Frankia sp. EAN1pec] gi|158107273|gb|ABW09470.1| chromosomal replication initiator protein DnaA [Frankia sp. EAN1pec] Length = 527 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 136/510 (26%), Positives = 228/510 (44%), Gaps = 52/510 (10%) Query: 32 EVNCESIFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 E + +++ + + + + +W + + ++ + L+ P F K + +R Sbjct: 22 EPDLSAVWEQAVAGVADGTLSGQQ-RAWLRLTRPLGLVQDTALLAAPNEFTKDLLDSRLR 80 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEK-----TASSPSITKLSPINTNISKSPIIL 145 ++ + R V + V P + P S + T P Sbjct: 81 PFLSTALSTAYGREIRVAVTVEHTPDPEPMTGPLTLPGTDPGGGPRSLLGTGHEPRPGEE 140 Query: 146 GK---------------------------------QTISPVFGSPLDSRFVFSTFIEGSS 172 + + P + L+ R++F TF+ G S Sbjct: 141 HRGEDRRNEDRLDGRLEGRVDGAPPGRMAPGLGRDPSPRPSEPARLNPRYLFETFVIGDS 200 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR A V NPLFI+ GLGKTHLL AI + ++K P ++ Y+ Sbjct: 201 NRFPHAA-----AVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYTVKLYPESKIKYV 255 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 + E F F ++IRD+ L + R+ID+LL+DD+QFL+ K Q EF H N L D+ Sbjct: 256 SMEEFTNDFIASIRDDRQLAFQRRYRDIDVLLVDDIQFLENKERTQEEFFHTFNVLHDTE 315 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V ++DR P +L +L+ R+RSR + G+ + D E R +IL + A + L Sbjct: 316 KQIVISSDRSPKQLSALEDRLRSRFEWGLITDVTPPDLETRIAILSKKAATER-----LP 370 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMR 410 + +VL ++A + + REL+GA ++ S + +A+ +L L+ ++ Sbjct: 371 VPPDVLEYIATHIERNIRELEGALIRVAAFASLNKSHVDRTLAEIVLRDLIPDAANPEIT 430 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I A ++ +S DL R R +V RQ+AMYL + +T S P+IG+ FG RDHT Sbjct: 431 AAAIMNATAAYFGVSMEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQHFGGRDHT 490 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLI 500 TV+HA RK+ ++ + +V L I Sbjct: 491 TVMHADRKIRGLMAERRAIYNQVTELTNRI 520 >gi|152963973|ref|YP_001359757.1| chromosomal replication initiator protein DnaA [Kineococcus radiotolerans SRS30216] gi|189044597|sp|A6W3V4|DNAA_KINRD RecName: Full=Chromosomal replication initiator protein DnaA gi|151358490|gb|ABS01493.1| chromosomal replication initiator protein DnaA [Kineococcus radiotolerans SRS30216] Length = 518 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 138/525 (26%), Positives = 243/525 (46%), Gaps = 64/525 (12%) Query: 31 LEVNC---ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +E + S++ ++L + V ++ + + +L L+VP + K I+ Sbjct: 1 METDGGDFPSVWERALAQLDDGVTQHQ-RAFVRLTRPLGLLDGTALLAVPNDLTKDVIEQ 59 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSV------------------ALPSVEKTASS---- 125 + E +T+ E + + + V ++PSVE+ S Sbjct: 60 KVREPLTRALSEAYGSPIRLAVTVDPSIGQVLTPERTGEHSGGVGSVPSVERERGSVLTG 119 Query: 126 --------------------------PSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 + + ++ + + S L+ Sbjct: 120 LDGDDGLHLDERRSGSLEEDSPLDDSDPDLLFTGYKVDRGPGTGRQPRRPTTRIENSRLN 179 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 +++F TF+ G+SNR A V NPLFI+ GLGKTHLL AI + Sbjct: 180 PKYIFETFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHY 234 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 + P ++V Y+ +E F F ++IRD+ A + R++D+LLIDD+QFL K Q Sbjct: 235 AQNLYPGVQVRYVNSEEFTNDFINSIRDDKAQAFQRRHRDVDVLLIDDIQFLSNKVQTQE 294 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L +++KQVV +D PP +L + R+RSR + G+ + D E R +IL+ Sbjct: 295 EFFHTFNTLHNASKQVVITSDLPPKQLSGFEERMRSRFEWGLITDVQPPDLETRIAILRK 354 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELL 397 + +L + ++V ++A ++++ REL+GA ++ S + ++A+ +L Sbjct: 355 -----KAIGERLEVPDDVNEYIASKISSNIRELEGALIRVTAFASLNRQPVDMQLAEIVL 409 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 L+ ET ++ I A +++++ DL R RT+V RQ+AMYL + +T S Sbjct: 410 RDLIPNEETPEITAAAIMGQTASYFSVTLEDLCGTSRSRTLVTARQIAMYLCRELTELSL 469 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P+IG+ FG RDHTTV+HA RK+++ + + +V L I + Sbjct: 470 PKIGQHFGGRDHTTVMHAERKIKQQMAERRSTYNQVTELTNRIKK 514 >gi|300742656|ref|ZP_07072677.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa M567] gi|300381841|gb|EFJ78403.1| DNA-directed DNA replication initiator protein [Rothia dentocariosa M567] Length = 553 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 132/386 (34%), Positives = 203/386 (52%), Gaps = 16/386 (4%) Query: 123 ASSPSITKLSPINTNISKSPIILGKQTISPVFG----SPLDSRFVFSTFIEGSSNRVALT 178 ++ P+ SP T S +S G + L+ + F TF+ G SNR A Sbjct: 172 SAVPAQPISSPAETEDISSQTADTHTAVSSDSGWDSSARLNPNYTFDTFVIGQSNRFAHA 231 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA +++E + Y NPLFI+ GLGKTHLL AI + + P+LRV Y+ +E F Sbjct: 232 AAFAVSESPAQAY-----NPLFIYGDSGLGKTHLLHAIGHYAKHLFPSLRVRYVNSEEFT 286 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 F ++IRD+ + K RN+D+LLIDD+QFL GK Q EF H N+L + KQVV Sbjct: 287 NDFINSIRDDEGSSFKQIYRNVDMLLIDDIQFLAGKEHTQEEFFHTFNALHNHQKQVVIT 346 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +D PP +L R+RSR + G+ + + E R +IL+ + + LN+ ++V+ Sbjct: 347 SDLPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAILRK-----KAQSESLNVPDDVM 401 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQR 416 ++A +T + REL+GA ++ S + +A+ +L L+ ++ + Sbjct: 402 EYIASHITANIRELEGALIRVTAFASLNKQPVDVALAEVVLKDLITDAGDAEITSGQVLA 461 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 A +++++ DL S R RT+ RQ+AMYL + +T S P IG+ G RDHTTV+HAV Sbjct: 462 TTASYFDVTLEDLRSKSRTRTLTNARQIAMYLLRELTDMSLPRIGQELGGRDHTTVMHAV 521 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 RKV + T +V L I + Sbjct: 522 RKVGAQMAERRTTFNQVTDLTNKIKQ 547 >gi|119714273|ref|YP_921238.1| chromosomal replication initiator protein DnaA [Nocardioides sp. JS614] gi|119534934|gb|ABL79551.1| chromosomal replication initiator protein DnaA [Nocardioides sp. JS614] Length = 528 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 144/538 (26%), Positives = 245/538 (45%), Gaps = 71/538 (13%) Query: 12 ENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI 71 ++D E+ +K VD L V + V + L+ P+ +W + + ++ + Sbjct: 8 QDDREMTQKAGAVDQSTSDLGVA----WRGVVNDLQ----PNQ-RAWLRASEPVTLHEST 58 Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 ++VP +F + ++ R + R + + V P +E +P Sbjct: 59 AIVAVPNDFTRNQLEGRLRAQLEDALTVRFGREIRIAVTVN----PQLEDAPVAPGDRTD 114 Query: 132 SPINTNISKSPIILGKQTISP--------------------------------------- 152 S S + + G +P Sbjct: 115 SATGRTDSGTDLAGGGHPEAPGQAPITRRTTQSLNRYDDMSTNSAAERSAVVPVPPAPEP 174 Query: 153 -------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + L+ ++ F TF+ GSSNR AA ++AE Y NPL ++ Sbjct: 175 DLGARPSSLETRLNPKYTFETFVIGSSNRFPHAAAVAVAEAPGKAY-----NPLLVYGDS 229 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL AI + +V Y+++E F F +AIRD+ K R++D+LLI Sbjct: 230 GLGKTHLLHAIGHYVRSLYTGAKVRYVSSEEFTNEFINAIRDDRQDRFKRRYRDVDVLLI 289 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL+GK Q EF H N+L ++ KQ+V +DR P LE+L+ R+R+R + G+ + Sbjct: 290 DDIQFLEGKTQTQEEFFHTFNTLHNANKQIVLTSDRAPKRLEALEDRLRNRFEWGLITDV 349 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL+ + A+ + L +VL +A + T+ REL+GA ++ + Sbjct: 350 QPPDLETRIAILRKKAAMDR-----LTAPPDVLEFIASKIQTNIRELEGALIRVTAFANL 404 Query: 385 AP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +A+ +L L+ G ++ I A ++ +S ++L R R +V RQ Sbjct: 405 NRQEVDMTLAEIVLKDLIPEGGEPEITAALIIAQTAAYFGLSIDELTGPSRGRHLVMARQ 464 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AMYL + +T S P+IG +FG+RDHTTV++A RK+ ++L + +V L + Sbjct: 465 IAMYLCRELTDLSLPKIGAQFGNRDHTTVMYADRKINQLLAERRAVFNQVSELTNRVK 522 >gi|157826881|ref|YP_001495945.1| chromosomal replication initiation protein [Rickettsia bellii OSU 85-389] gi|166214697|sp|A8GVN1|DNAA_RICB8 RecName: Full=Chromosomal replication initiator protein DnaA gi|157802185|gb|ABV78908.1| chromosomal replication initiation protein [Rickettsia bellii OSU 85-389] Length = 463 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 168/470 (35%), Positives = 280/470 (59%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N ++++ V+ L N G +Y SWF ++ F N V L PTNF++ WIK++Y I Sbjct: 14 NSVNVWSNVTQDLYNYYGEALYNSWFSKVNFIESSLNTVILCAPTNFIRDWIKSKYSVVI 73 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 +LFQ ++ I+ VEI+ + LP+ + + I ++ S I Sbjct: 74 LQLFQHYNNAIKTVEIITKE--LPASNQATLELPTKTFADIGSSELNSENIF-------- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S D RF F F+ G+ N + A + V NPLF++ VGLGKTHL+ Sbjct: 124 --STFDIRFTFDNFVVGAPNEL---AYAAARAVAESSSAVSESNPLFLYGGVGLGKTHLM 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + P+ +V+Y++AE FM++F A+R+ ++ K+ R++D+L+IDD+QF+ G Sbjct: 179 HAIGWYIKQNNPSRKVIYMSAEKFMYQFVKALRNKEVMSFKEKFRSVDVLMIDDIQFICG 238 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L+D+ +Q+V + DR PS+L+ ++ RI+SRL G+ + YE+R Sbjct: 239 KDSTQEEFFHTFNTLIDNNRQMVISCDRSPSDLDDIEDRIKSRLGWGLVADVHSTTYELR 298 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 IL+ S+ E + + ++ + +A + ++ REL+GA N+++ +F A +T E Sbjct: 299 LGILE-----SKIEQMNVKVPKDAIDFLASKIVSNVRELEGALNKVIAHSNFTAKEITLE 353 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +L L+ + + + +EDIQ+ VA YNI +D+ S RR+RT+ RPRQ+AMYLSKI Sbjct: 354 NTQNILRDLLRSN-ERIITVEDIQKKVANRYNIKLSDMSSPRRMRTIARPRQIAMYLSKI 412 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP+S +IG++FG +DHTTV+HA++KVE++LE+D+ L++E+ L+ +++ Sbjct: 413 LTPKSLVDIGKKFGKKDHTTVMHAIKKVEELLESDLELREEINLMMKILQ 462 >gi|50953926|ref|YP_061214.1| chromosomal replication initiator protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|61212563|sp|Q6AHN6|DNAA_LEIXX RecName: Full=Chromosomal replication initiator protein DnaA gi|50950408|gb|AAT88109.1| chromosomal replication initiator protein [Leifsonia xyli subsp. xyli str. CTCB07] Length = 473 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 127/477 (26%), Positives = 226/477 (47%), Gaps = 17/477 (3%) Query: 32 EVNCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 E + + V +L+ +++ P ++ + ++ ++ +L VP F + I+ R Sbjct: 5 EESISVAWQSVLDKLETDDRITPQLHG-FLSLVEPKGIMAGTFYLEVPNEFTRGMIEQRS 63 Query: 90 LETITKLFQEEHS--RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + + + I+V T P T ++ Sbjct: 64 RVPLLNAIGTLDNTLAVTTFAIVVNPEIQQESLSTVGEPEPTPAPYLDVATFTVAPPAEI 123 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + L+S++ F F+ G SNR A V NPLFI+ GL Sbjct: 124 TAPPRNGDTRLNSKYSFDNFVIGQSNRF-----AHAAAVAVAEAPAKAYNPLFIYGDSGL 178 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL AI + ++ P +RV Y+++E F F ++I +N + + RNID+LLIDD Sbjct: 179 GKTHLLHAIGHYAMSLYPGIRVRYVSSEEFTNDFINSIANNRGSSFQARYRNIDILLIDD 238 Query: 268 MQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFLQ Q F H N+L D KQVV +D PP L + R+RSR + G+ + + Sbjct: 239 IQFLQRAVETQEAFFHTFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGLITDVQV 298 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL+ + + K+ + +++L +A ++++ REL+G ++ S Sbjct: 299 PDLETRIAILRK-----KAQSEKIQVPDDILEFMASKISSNIRELEGTLIRVTAFASLNR 353 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + + +L L+ + + DI A+++ ++ +DL + R + V RQ+A Sbjct: 354 TPVDMPLVQTVLKDLITLDDDNVIAPTDIITNTAEYFKLTVDDLYGSSRSQAVATARQIA 413 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYL + +T S P+IG+ FG RDHTTV++A +K+ ++++ ++ +V L I + Sbjct: 414 MYLCRELTNLSLPKIGQLFGGRDHTTVMYANKKISELMKERRSIYNQVTELTSRIKQ 470 >gi|313817643|gb|EFS55357.1| replication initiator protein DnaA [Propionibacterium acnes HL046PA2] gi|314961663|gb|EFT05764.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA2] gi|315081497|gb|EFT53473.1| replication initiator protein DnaA [Propionibacterium acnes HL078PA1] gi|315083080|gb|EFT55056.1| replication initiator protein DnaA [Propionibacterium acnes HL027PA2] gi|315086613|gb|EFT58589.1| replication initiator protein DnaA [Propionibacterium acnes HL002PA3] Length = 428 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 137/436 (31%), Positives = 224/436 (51%), Gaps = 17/436 (3%) Query: 74 LSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS-----VALPSVEKTASSPSI 128 ++VP F + ++++ + +L + + + I + + P E Sbjct: 2 VAVPNEFARDRLESKMRYELEELLSDHFHKAIHLAITIDPDLELALGAPDHEDEEEEVPP 61 Query: 129 TKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDS 188 + P T P TI G+ L+ ++ F +F+ G+SNR A AA ++AE Sbjct: 62 AQFVPKVTVGVTEPSARPTTTIDDDEGNRLNPKYTFDSFVIGASNRFAHAAAVAVAEAPG 121 Query: 189 HGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN 248 Y NPL I+ GLGKTHLL AI + N++V Y++ E F +AI N Sbjct: 122 KSY-----NPLLIYGGSGLGKTHLLHAIGRYVMSYYDNVKVKYVSTEELTNDFINAIGTN 176 Query: 249 CALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELES 307 + S R++D+LL+DD+QFLQ K Q EF H N+L ++ KQ+V +DRPP LE+ Sbjct: 177 RTTEFRRSYRDVDVLLVDDIQFLQSKIQTQEEFFHTFNTLHNAQKQIVMTSDRPPKLLEA 236 Query: 308 LDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTS 367 L+PR+RSR + G+ + D E R +IL+ ++A + + + +VL +A + T+ Sbjct: 237 LEPRLRSRFEWGLLTDIQPPDLETRIAILRRKVAAEK-----ITVEPDVLEFIASRIQTN 291 Query: 368 GRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA ++ S + +A+ +L L+ G + E I A +++IS Sbjct: 292 IRELEGALIRVTAFASLNQQPVDISLAEVVLKDLIPEGRETPVTPERIIAETADYFDISA 351 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 +DLL R +T+V RQ+AMYL + +T S P+IG FG +DHTTV+HA RK+ ++ Sbjct: 352 DDLLGTSRAQTLVTARQIAMYLCRELTDLSLPKIGAEFGGKDHTTVMHADRKIRALMGEQ 411 Query: 487 ITLKKEVELLKRLISE 502 + +V + I + Sbjct: 412 RQIFNQVSEITNRIKQ 427 >gi|161506635|ref|YP_001576583.1| chromosomal replication initiation protein [Lactobacillus helveticus DPC 4571] gi|172048332|sp|A8YW41|DNAA_LACH4 RecName: Full=Chromosomal replication initiator protein DnaA gi|160347624|gb|ABX26298.1| Chromosomal replication initiation protein [Lactobacillus helveticus DPC 4571] Length = 455 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 236/471 (50%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + E + + ++ + Y +WF+ K N + + V K + + Sbjct: 3 DIEKFWQHFNDEMRARFNEVAYNAWFKNTKPIFYNKNTHELKILVQNPVAKGYWEKNLSS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + G+EIL P + ++ S ++ + + Sbjct: 63 QLIQSAYGYA----GIEIL------PVFQINENNDSPERIVTPEPRYAIQLQQEKRAHKQ 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 113 FTKNLKLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAIGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDQFREKYRTCDLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 288 TRIAILRR-----KAEAEGLVIDDNTLDYIASQVDTNIRELEGALVKVQAYATIERADIN 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS Sbjct: 343 VNLAREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++TD +K V LK++I Sbjct: 403 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQIKTDTEIKSAVFDLKQMI 453 >gi|300362678|ref|ZP_07058854.1| DNA-directed DNA replication initiator protein [Lactobacillus gasseri JV-V03] gi|300353669|gb|EFJ69541.1| DNA-directed DNA replication initiator protein [Lactobacillus gasseri JV-V03] Length = 464 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 236/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + ++ +K Y +WF+ K S + ++V + K + + Sbjct: 13 DLDKFWQFFNAEMKKSYSTVAYNAWFKNTKPISFNKKTKEMIIAVESPVAKGYWEKNLAS 72 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + V A +L I + IL + Sbjct: 73 QLIQEAYAYADMEIQPKFEV-----------AGKEGPERLVTPKPRIKTNQEILEDRRDE 121 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 122 FAQDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 176 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + + + +VVY+ +E F+ F ++I++ ++ RN DLLL+DD+QF Sbjct: 177 LMQAIGHQMLAEKLHAKVVYIQSETFVNDFINSIKNKTQAEFRNKYRNCDLLLVDDIQFF 236 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 237 SKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLE 296 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 297 TRIAILRK-----KAETDGLAIDDSTLDYIASQVDTNIRELEGALVKVQAHATIEREDIN 351 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS Sbjct: 352 VDLAKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLS 411 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 412 RELTDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 462 >gi|332364164|gb|EGJ41941.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK49] Length = 450 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 234/472 (49%), Gaps = 32/472 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAVIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F+ + +I G I + + +SP I+ + P P Sbjct: 65 AGFEIFNDQIAGKYIFEEETNTETPKSAVTSPQISTVQP----------------SLPPI 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL Sbjct: 109 DTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLN 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 164 AIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGK 223 Query: 275 L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 224 KVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTA 390 +IL+N + ED + L ++A ++ R+L+GA N L+ R +T Sbjct: 284 IAILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITI 338 Query: 391 EIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL+ Sbjct: 339 DIAAEAIRARKQDSNQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLT 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 399 RELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|199598234|ref|ZP_03211655.1| DNA replication ATPase initiation [Lactobacillus rhamnosus HN001] gi|258506996|ref|YP_003169747.1| chromosomal replication initiation protein [Lactobacillus rhamnosus GG] gi|258538192|ref|YP_003172691.1| chromosomal replication initiation protein [Lactobacillus rhamnosus Lc 705] gi|199590837|gb|EDY98922.1| DNA replication ATPase initiation [Lactobacillus rhamnosus HN001] gi|257146923|emb|CAR85896.1| Chromosomal replication initiator protein dnaA [Lactobacillus rhamnosus GG] gi|257149868|emb|CAR88840.1| Chromosomal replication initiator protein dnaA [Lactobacillus rhamnosus Lc 705] gi|259648366|dbj|BAI40528.1| chromosomal replication initiator protein DnaA [Lactobacillus rhamnosus GG] Length = 449 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 140/470 (29%), Positives = 243/470 (51%), Gaps = 28/470 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N E ++ ++ + + ++ P Y++W Q K + + + + VP + KA+ + + + Sbjct: 3 NLEELWAYLNDKFREELTPVGYSTWIQTAKPVKLTQDKLEIEVPASLHKAYWEKNLVTKV 62 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + E ++ V V + E L P +T+ + Q ++ Sbjct: 63 VEGVYEFA------QLEVDPVIMTKDE----------LQPASTHQHQVTDDDDDQQLTFK 106 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ ++ F F+ G N++A AA ++AE Y NPLFI+ VGLGKTHL+ Sbjct: 107 AKTHLNPKYTFDRFVIGKGNQMAHAAALAVAEAPGTTY-----NPLFIYGGVGLGKTHLM 161 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N ++ P + Y+T+E F F ++I+ + RN+DLLL+DD+QF Sbjct: 162 QAIGNLVLENNPAANIKYVTSENFANDFINSIQTKQQEQFRQEYRNVDLLLVDDIQFFGD 221 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ+V +DR P+E+ L R+ SR G+SV + D E R Sbjct: 222 KEATQEEFFHTFNTLYENMKQIVLTSDRLPNEIPKLQERLVSRFNKGLSVDVTPPDLETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAE 391 +IL+N + L+I ++ L ++A + ++ R+L+GA ++ + +T Sbjct: 282 IAILRN-----KANAEDLSIPDDTLSYIAGQIESNVRDLEGALVRVQAFSTMKNEDITTS 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A + L L + ++ I I VAK++ ++ DL +RV+ +V PRQ+AMYL++ Sbjct: 337 LAADALKALKLDDRSGQLTIPQILDAVAKYFQVTVQDLKGKKRVKQIVIPRQIAMYLARE 396 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ G +DHTTV+HA K+ + T+ LK V L+ ++ Sbjct: 397 MTDNSLPKIGQEIGGKDHTTVIHAHEKIMAAMTTNEDLKAHVVELRNILK 446 >gi|324991866|gb|EGC23789.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK405] gi|324996244|gb|EGC28154.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK678] gi|325698032|gb|EGD39913.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK160] gi|327458490|gb|EGF04840.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1] gi|327471608|gb|EGF17051.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK408] Length = 450 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 143/471 (30%), Positives = 234/471 (49%), Gaps = 30/471 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAVIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 G EI +A + + ++ K ++ SP I Q P Sbjct: 65 A---------GFEIFNDQIAGKYIFEEETNTETPK------SVVTSPQISTVQPSLPPID 109 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 110 TGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 165 IGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKK 224 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 225 VSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRI 284 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + ED + L ++A ++ R+L+GA N L+ R +T + Sbjct: 285 AILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITID 339 Query: 392 IADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL++ Sbjct: 340 IAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLTR 399 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 400 ELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|160893411|ref|ZP_02074196.1| hypothetical protein CLOL250_00960 [Clostridium sp. L2-50] gi|156864806|gb|EDO58237.1| hypothetical protein CLOL250_00960 [Clostridium sp. L2-50] Length = 454 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 128/479 (26%), Positives = 246/479 (51%), Gaps = 36/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK-- 86 ++ S + + S L+ + + V +W + LK +SV ++ ++ I+ Sbjct: 1 MKELILSKWDEILSLLETEHGLSHIVINTWIKPLKLYSVEGKKLYFTIDEQMGARGIEFI 60 Query: 87 --NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 Y + +E + +E+++ + N I+ Sbjct: 61 NKKMYDMFLVTSIREVL-QDDSIEVVIDLES-------------------NLKNDSKEIV 100 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 ++ + S L ++ F TF+ G SN++A ++A+ + NPLF++ Sbjct: 101 TSEEYNEAITKSNLYPKYTFETFVVGESNKLAHATCLAVADSPGLD----KFNPLFLYGG 156 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHL+Q+IA+ ++ N++V+Y+ + F AI+ N ++ R +D+LL Sbjct: 157 AGLGKTHLMQSIAHYILQHNKNMKVLYVPSNKFTNEIVEAIKKNKTDEFREKYRTVDVLL 216 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+Q+L GK Q EF N+L D KQ++ ++D+PP E+++L+ R RSR + GV + Sbjct: 217 IDDIQYLIGKESTQQEFFDTFNALHDEGKQIILSSDKPPKEIKTLEERFRSRFEWGVPID 276 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + DYE R +ILKN++ ++ + NI++ +L ++A VT + REL+GA N++ Sbjct: 277 IHAPDYETRMAILKNKVEMNGYK----NISDNILEYIANNVTYNVRELEGALNKISVYAE 332 Query: 384 FAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + +T ++A +L +++ + + I V++H NIS +D+ S++R + V R Sbjct: 333 LGNVTITEDLAKNILKDMISKETNVAITPDLIINTVSEHLNISVDDIKSSKRSQDVANAR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Q++MYL + T + IG FG +DH+TVL +++VE+ + D + ++++ + +S Sbjct: 393 QISMYLCRKFTTKGLKTIGDVFGGKDHSTVLSNIKRVEERIANDPEYAETIDVIMKKLS 451 >gi|72117120|gb|AAZ59383.1| chromosomal replication initiator protein, DnaA [Ralstonia eutropha JMP134] Length = 611 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 130/408 (31%), Positives = 208/408 (50%), Gaps = 17/408 (4%) Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN----TNISKSPIILGKQTISPVFG 155 + I V++ VA S P + + P + + + Sbjct: 214 DMGEIDVVQMDPSEVAARSYRMQPQQPPMQSGPMVQHPGPGGPGAQPGQPSQASDTVHER 273 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 274 SRLNPILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 328 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 329 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKN 388 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 389 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 448 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + +++ EEV VA+ + ++ REL+GA +++ +F +T E+ Sbjct: 449 IL-----MKKAAAENVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGRDITIEVT 503 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 504 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 562 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 563 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 610 Score = 75.9 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 5/102 (4%) Query: 14 DVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--I 71 +A P + K + + + +++L+ ++ P + +W + L Sbjct: 10 GATVAVAHPGDALTK---QKTMQDFWQAAAAQLERELTPQQFKTWIKPLAPVGFDEEALT 66 Query: 72 VHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRS 113 + ++ P F W+K+++ IT L E V ++ Sbjct: 67 LRIAAPNRFKLDWVKSQFSGRITALACEYWEAQVSVHFVLDP 108 >gi|333029142|ref|ZP_08457203.1| Chromosomal replication initiator protein dnaA [Bacteroides coprosuis DSM 18011] gi|332739739|gb|EGJ70221.1| Chromosomal replication initiator protein dnaA [Bacteroides coprosuis DSM 18011] Length = 470 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 120/472 (25%), Positives = 236/472 (50%), Gaps = 16/472 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ + +++ V Y +WF + + + VP+ F +++ ++++ + Sbjct: 8 ALWNDCLNIIRDNVAESTYNTWFAPIIPLKFEDKTLVIQVPSQFFYEFLEEKFVDLLRHT 67 Query: 97 FQEEHSR----IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + V + + A ++E + S ++ K + + Sbjct: 68 LYQVIGEGAKLMYNVMVDRSASATVNLEASNRSTAVRKNNISPAAPRTRIPQAPQAPAIQ 127 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ + F TFIEG+SN+++ + A+++AE + NPLFIH + G+GKTHL Sbjct: 128 ELDPRLNPDYTFETFIEGNSNKLSRSVAEAVAENPAK----TVFNPLFIHGNSGVGKTHL 183 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI +R P RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q Sbjct: 184 ANAIGLRIKERYPEKRVLYVSAHLFQIQYTDSVRNNTTNDFINFYQTIDVLIIDDIQEFA 243 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 G Q+ F H+ N L + KQ++ +D PP L+ ++ R+ +R + G+ L E+ Sbjct: 244 GVVKTQNTFFHIFNHLHQNGKQLILTSDLPPVLLQGMEDRLLTRFKWGMVAELERPSVEL 303 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTA 390 R IL+N + L+ EV+ ++A V S R+L+G ++ + + + Sbjct: 304 RKDILRN-----KIHRDGLDFPTEVITYIAENVDDSVRDLEGIVISIMAHSTIYNKEIDL 358 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A ++ +V + E K + I++I V ++ I + S R R VV+ R AM+L+K Sbjct: 359 DLAQRIVKKVVRS-EKKVITIDNILTAVTDYFKIEPKQIHSRSRKREVVQARHFAMFLAK 417 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 T S P+IG+ G+R+H+TVLHA + V+ E D + + ++E ++ L+ + Sbjct: 418 KYTEYSTPKIGKFIGNRNHSTVLHACKTVKHQCEVDKSYRADMEAVQELLHK 469 >gi|323350829|ref|ZP_08086488.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis VMC66] gi|322123003|gb|EFX94706.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis VMC66] gi|325686477|gb|EGD28506.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK72] gi|327463834|gb|EGF10150.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1057] Length = 450 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 234/472 (49%), Gaps = 32/472 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAVIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F+ + +I G I + + +SP I+ + P P Sbjct: 65 AGFEIFNDQIAGKYIFEEETNTETSKSVVTSPQISTVQP----------------SLPPI 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL Sbjct: 109 DTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLN 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 164 AIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGK 223 Query: 275 L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 224 KVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTA 390 +IL+N + ED + L ++A ++ R+L+GA N L+ R +T Sbjct: 284 IAILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITI 338 Query: 391 EIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL+ Sbjct: 339 DIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLT 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 399 RELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|268318563|ref|YP_003292219.1| Chromosomal replication initiator protein dnaA [Lactobacillus johnsonii FI9785] gi|262396938|emb|CAX65952.1| Chromosomal replication initiator protein dnaA [Lactobacillus johnsonii FI9785] Length = 454 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 237/471 (50%), Gaps = 25/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + ++ +K Y +WF+ K S + ++V + K + + Sbjct: 3 DLDKFWQFFNAEMKKSYSMVAYNAWFKNTKPISFNKKTKEMIIAVESPVAKGYWEKNLAS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + + V A +L I + IL + Sbjct: 63 QLIQEAYAYADMEIQPKFEV-----------AGKEGPERLVTPQPRIKTNQEILENRRDE 111 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 112 FAQDLQLTSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTH 166 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI + + +P+ +VVY+ +E F+ F ++I++ + ++ RN DLLL+DD+QF Sbjct: 167 LMQAIGHQMLAEKPHAKVVYIQSETFVNDFINSIKNKTQVEFRNKYRNCDLLLVDDIQFF 226 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 227 SKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPELSERLVSRFAWGLQVEITPPDLE 286 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 287 TRIAILRK-----KAETDGLAIDDSTLDYIASQVDTNIRELEGALVKVQAHATIEREDIN 341 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A E L+ L + + ++I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS Sbjct: 342 VDLAKEALADLKLVQKNRGLQISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLS 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K+ + L+TD +K V LK ++ Sbjct: 402 RELTDSSLPKIGQEFGGKDHTTVMHACDKISRALKTDAEIKAAVYDLKAML 452 >gi|312869247|ref|ZP_07729419.1| chromosomal replication initiator protein DnaA [Lactobacillus oris PB013-T2-3] gi|311095268|gb|EFQ53540.1| chromosomal replication initiator protein DnaA [Lactobacillus oris PB013-T2-3] Length = 435 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 144/471 (30%), Positives = 240/471 (50%), Gaps = 40/471 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +S++ + + + G + ++ K S+ + + +PT + + E Sbjct: 2 TELDSLWEAIQNSFRQYTGQVTFDNFIAPAKPISLSQTRLEIELPTPMHRDFWNKNLTEK 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + Q E R + PI + + + P Sbjct: 62 LKEYVQRELGR--------------------------AVEPIYVLTGEQKSPKPQPSAVP 95 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 PL+ + F TF+ G N++A AA + AE + +NPLFI+ VGLGKTHL Sbjct: 96 TSNIPLNPYYNFETFVVGDGNKIAHAAALNAAERPGY------MNPLFIYGGVGLGKTHL 149 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 ++AI N +K N RV Y+T+E F F ++I+ ++ RN+DLLLIDD+QFL Sbjct: 150 MEAIGNYMLKINKNARVKYVTSEEFTNDFINSIQKRTTEQFREEYRNLDLLLIDDIQFLA 209 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N+L D KQ+V +DR P E+ L R+ SR G+ V + D E Sbjct: 210 DKEGTQIEFFNTFNTLYDQQKQIVLTSDRMPREIPELQDRLVSRFMWGMPVEITPPDLET 269 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTA 390 R +IL+ S+ E+ ++I + L ++A + T+ REL+GA ++ + I+T Sbjct: 270 RIAILR-----SKVEEDHIDIGNDTLNYIAGQIDTNVRELEGALTKVQVYADLSNEIITP 324 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A L +++ +EDIQ+ VA YNI++ D++ +RV+ +V PRQ+AMYL++ Sbjct: 325 HLASRALKDF-RHSAKRQITVEDIQKQVASFYNITQADIIGKKRVKQIVMPRQIAMYLTR 383 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG+ FG +DHTTVLHA+ K+E ++ D L++++ LK ++ Sbjct: 384 ELTDFSLPKIGKEFGGKDHTTVLHAIDKIEASIKDDSQLQQDIHKLKDQLN 434 >gi|325689354|gb|EGD31360.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK115] Length = 450 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 141/472 (29%), Positives = 234/472 (49%), Gaps = 32/472 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAVIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F+ + +I G I + + +SP I+ + P P Sbjct: 65 AGFEIFNDQIAGKYIFEEETNTETPKSAVTSPQISTVQP----------------SLPPI 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL Sbjct: 109 DTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLN 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 164 AIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGK 223 Query: 275 L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 224 KVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTA 390 +IL+N + E+ + L ++A ++ R+L+GA N L+ R +T Sbjct: 284 IAILRN-----KIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITI 338 Query: 391 EIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL+ Sbjct: 339 DIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLT 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 399 RELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|332359496|gb|EGJ37315.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1056] Length = 450 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 143/471 (30%), Positives = 234/471 (49%), Gaps = 30/471 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAIIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 G EI +A + + ++ K ++ SP I Q P Sbjct: 65 A---------GFEIFNDQIAGKYIFEEETNTETPK------SVVTSPQISTVQPSLPPID 109 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 110 TGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 165 IGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKK 224 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 225 VSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRI 284 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + ED + L ++A ++ R+L+GA N L+ R +T + Sbjct: 285 AILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITID 339 Query: 392 IADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL++ Sbjct: 340 IAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLTR 399 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 400 ELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|227549437|ref|ZP_03979486.1| chromosomal replication initiation protein [Corynebacterium lipophiloflavum DSM 44291] gi|227078514|gb|EEI16477.1| chromosomal replication initiation protein [Corynebacterium lipophiloflavum DSM 44291] Length = 534 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 145/538 (26%), Positives = 245/538 (45%), Gaps = 76/538 (14%) Query: 30 CLEVNCESIFTIVSSRL-------KNQVGPDVYA--SWFQRLKFHSVLHNIVHLSVPTNF 80 ++ +++ + S L + V + ++ Q + ++ V L+ P Sbjct: 1 MVDQQLAALWRDIVSELLTLSERPNSNVPTLTHQERAYLQLVTPVMLVDGYVILAAPHAA 60 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKT---ASSPSITKLSPINTN 137 K I+N IT L + + + + ++ + E+ S P T + + Sbjct: 61 AKTVIENSLGTHITALLSRKLNTTCTLAVSIQQPEPVANEQPRPLDSKPEQTSVPDWFST 120 Query: 138 ISKSPIILGKQTI----------------------------------------------- 150 S+ P T Sbjct: 121 SSRPPAFTEDATPGEVGEQIPMGLDELARLHSQHQAEAKGASGGRRQASAHPTVPQRLPR 180 Query: 151 -----SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 +P + L+ ++ F F+ GSSNR A AA ++AE + Y NPLFI Sbjct: 181 ETPAHNPDREASLNPKYTFENFVIGSSNRFANGAAVAVAENPARAY-----NPLFIWGGS 235 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHLL A N + QPNLR+ Y+++E F + +++RD+ + K RN+D+L++ Sbjct: 236 GLGKTHLLHAAGNYAKLLQPNLRISYVSSEEFTNDYINSVRDDRQESFKRRYRNLDILMV 295 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL+GK Q EF H N+L KQ++ ++DRPP +L +L+ R+R+R +GG+ + Sbjct: 296 DDIQFLEGKEGTQEEFFHTFNALHQQNKQIILSSDRPPRQLTTLEDRLRTRFEGGLITDV 355 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 D E R +IL + A ++ VL +A +S REL+GA ++ S Sbjct: 356 QPPDLETRIAILMKKAAADGTH-----VDHAVLELIASQFESSIRELEGALIRVSAYSSL 410 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T E+A L L+ G + I+ A++++IS + L + R V RQ Sbjct: 411 INEPITLEVAQVALRDLLPNGGEVTISAAVIKEAAAEYFDISLDQLTGAGKTRLVAHARQ 470 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AMYL + +T S P+IG FG +DHTTV++A RK+ K + + E+++L ++I Sbjct: 471 LAMYLCRELTDLSLPKIGDEFGGKDHTTVMYADRKIRKEMTENRGTYDEIQVLTQMIK 528 >gi|16124264|ref|NP_418828.1| chromosomal replication initiator protein DnaA [Caulobacter crescentus CB15] gi|221232947|ref|YP_002515383.1| chromosomal replication initiation protein [Caulobacter crescentus NA1000] gi|239977204|sp|B8GWW5|DNAA_CAUCN RecName: Full=Chromosomal replication initiator protein DnaA gi|239977205|sp|P0CAU4|DNAA_CAUCR RecName: Full=Chromosomal replication initiator protein DnaA gi|13421094|gb|AAK21996.1| chromosomal replication initiator protein DnaA [Caulobacter crescentus CB15] gi|220962119|gb|ACL93475.1| chromosomal replication initiator protein DnaA [Caulobacter crescentus NA1000] Length = 490 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 161/471 (34%), Positives = 240/471 (50%), Gaps = 14/471 (2%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++++ V LK ++G + SW V L T + WI+ I +L Sbjct: 25 NVWSKVCVALKRELGDAAFGSWIAPAMLREAATGDVVLVTSTGIARDWIRRSAWRRIGEL 84 Query: 97 FQEEHSRIQGVEILVR----SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + +++ R + A VE T + + + + + +P ++ SP Sbjct: 85 WAAHDATGRRIDLKSRLEFEAAAGAYVEATPKAVAAEPIEIVLPVSTDAPTVVAPSAKSP 144 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L RF F TF+ G +N A A+ IA + NP+ H G GKTHL Sbjct: 145 RTQ-GLQERFTFETFVPGPANEFAHAVARRIA-----NWADGHFNPVLFHGPYGFGKTHL 198 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+A +++ P RVVYLTAE F+ F A+ D K+ LR DLL+IDD+ F+ Sbjct: 199 LNALAWEAMRNAPEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLLIIDDVHFIA 258 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q E H L +L+ +VV +ADRPPS + +D +RS L G+ L D + Sbjct: 259 GKQSTQEELFHTLTALVGEGGRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRNL 318 Query: 332 RFSILKNRLAISQK-EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILT 389 R IL+ ++ + +I EV+ +A T S REL+GA N L R +T Sbjct: 319 RLGILERKIQTLGAAHGFEPSIRPEVMQFLADRFTDSVRELEGALNTLSARAGEGLSRMT 378 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + +L + +G K++ I+DIQ+ A+HY + + DLLS RR R V RPRQ AM+L+ Sbjct: 379 LDEVQAILRPHLRSG-EKRITIDDIQKATAEHYGMKQADLLSERRNRAVARPRQAAMWLA 437 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T RS P+IGRRFG RDHTTVLHAVR++E + D L ++E L R + Sbjct: 438 KQLTTRSLPDIGRRFGGRDHTTVLHAVRRIEALRAEDSALSHDLETLTRKL 488 >gi|309804058|ref|ZP_07698139.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 11V1-d] gi|309804898|ref|ZP_07698960.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 09V1-c] gi|309809771|ref|ZP_07703625.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 2503V10-D] gi|312871204|ref|ZP_07731302.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 3008A-a] gi|312873305|ref|ZP_07733360.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2052A-d] gi|312874899|ref|ZP_07734918.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2053A-b] gi|325912307|ref|ZP_08174704.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 143-D] gi|329919771|ref|ZP_08276722.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 1401G] gi|308163826|gb|EFO66092.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 11V1-d] gi|308165837|gb|EFO68058.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 09V1-c] gi|308169950|gb|EFO71989.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 2503V10-D] gi|311089644|gb|EFQ48069.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2053A-b] gi|311091185|gb|EFQ49574.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2052A-d] gi|311093218|gb|EFQ51564.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 3008A-a] gi|325475966|gb|EGC79135.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 143-D] gi|328937118|gb|EGG33546.1| chromosomal replication initiator protein DnaA [Lactobacillus iners SPIN 1401G] Length = 453 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 240/474 (50%), Gaps = 28/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYL 90 ++ E + + +K + Y +WF+ K S N + +SV + K + + Sbjct: 2 LDLEKFWQFFTDNMKKRYSEVAYNAWFKNTKPLSFDKNSKQMTISVESPVSKGYWEKNLA 61 Query: 91 ET-ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I + + I + K A + + T + P+I Sbjct: 62 SQLIQEAYAYTDMEIIPI------------FKIAGDTNSERFVVHKTPKKQEPVIENNHN 109 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGK Sbjct: 110 -EFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGK 163 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD+Q Sbjct: 164 THLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQ 223 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D Sbjct: 224 FFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPD 283 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + E L I++ L +VA V T+ REL+GA ++ + Sbjct: 284 LETRIAILRK-----KAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQAHATIERED 338 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PRQ+AMY Sbjct: 339 INLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMY 398 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K+E+ L+TD +K V LK +++ Sbjct: 399 LSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKIERSLKTDSEIKSAVYDLKAMLN 452 >gi|328945174|gb|EGG39329.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1087] Length = 450 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 141/472 (29%), Positives = 235/472 (49%), Gaps = 32/472 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAVIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F+ + +I G I + + + +SP I+ + P P Sbjct: 65 AGFEIFNDQIAGKYIFEEETNIDTPKSAVTSPQISTVQP----------------SLPPI 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL Sbjct: 109 DTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLN 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 164 AIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGK 223 Query: 275 L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 224 KVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTA 390 +IL+N + E+ + L ++A ++ R+L+GA N L+ R +T Sbjct: 284 IAILRN-----KIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITI 338 Query: 391 EIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL+ Sbjct: 339 DIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLT 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 399 RELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|332365094|gb|EGJ42859.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK355] Length = 450 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 235/472 (49%), Gaps = 32/472 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAIIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F+ + +I G I + + + +SP I+ + P P Sbjct: 65 AGFEIFNDQIAGKYIFEEETNIDTPKSAVTSPQISTVQP----------------SLPPI 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL Sbjct: 109 DTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLN 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 164 AIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGK 223 Query: 275 L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 224 KVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTA 390 +IL+N + ED + L ++A ++ R+L+GA N L+ R +T Sbjct: 284 IAILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITI 338 Query: 391 EIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL+ Sbjct: 339 DIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLT 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 399 RELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|325695760|gb|EGD37659.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK150] Length = 450 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 235/472 (49%), Gaps = 32/472 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAIIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F+ + +I G I + + + +SP I+ + P P Sbjct: 65 AGFEIFNDQIAGKYIFEEETKIDTPKSAVTSPQISTVQP----------------SLPPI 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL Sbjct: 109 DTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLN 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 164 AIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGK 223 Query: 275 L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 224 KVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTA 390 +IL+N + ED + L ++A ++ R+L+GA N L+ R +T Sbjct: 284 IAILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITI 338 Query: 391 EIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL+ Sbjct: 339 DIAAEAIRARKQDSNQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLT 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 399 RELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|312872761|ref|ZP_07732826.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2062A-h1] gi|315654131|ref|ZP_07907047.1| DNA-directed DNA replication initiator protein [Lactobacillus iners ATCC 55195] gi|325913710|ref|ZP_08176072.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 60-B] gi|311091803|gb|EFQ50182.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LEAF 2062A-h1] gi|315488827|gb|EFU78473.1| DNA-directed DNA replication initiator protein [Lactobacillus iners ATCC 55195] gi|325477069|gb|EGC80219.1| chromosomal replication initiator protein DnaA [Lactobacillus iners UPII 60-B] Length = 453 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 240/474 (50%), Gaps = 28/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYL 90 ++ E + + +K + Y +WF+ K S N + +SV + K + + Sbjct: 2 LDLEKFWQFFTDNMKKRYSEVAYNAWFKNTKPLSFDKNSKQMTISVESPVSKGYWEKNLA 61 Query: 91 ET-ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I + + I + K A + + T + P+I Sbjct: 62 SQLIQEAYAYTDMEIIPI------------FKIAGDTNSERFVVHKTQKKQEPVIENNHN 109 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGK Sbjct: 110 -EFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGK 163 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD+Q Sbjct: 164 THLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQ 223 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D Sbjct: 224 FFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPD 283 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + E L I++ L +VA V T+ REL+GA ++ + Sbjct: 284 LETRIAILRK-----KAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQAHATIERED 338 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PRQ+AMY Sbjct: 339 INLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMY 398 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K+E+ L+TD +K V LK +++ Sbjct: 399 LSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKIERSLKTDSEIKSAVYDLKAMLN 452 >gi|324989578|gb|EGC21524.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK353] Length = 450 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 235/472 (49%), Gaps = 32/472 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAIIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F+ + +I G I + + + +SP I+ + P P Sbjct: 65 AGFEIFNDQIAGKYIFEEETKIDTPKSAVTSPQISTVQP----------------SLPPI 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL Sbjct: 109 DTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLN 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 164 AIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGK 223 Query: 275 L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 224 KVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTA 390 +IL+N + ED + L ++A ++ R+L+GA N L+ R +T Sbjct: 284 IAILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITI 338 Query: 391 EIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL+ Sbjct: 339 DIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLT 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 399 RELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|23465223|ref|NP_695826.1| chromosomal replication initiation protein [Bifidobacterium longum NCC2705] gi|189440298|ref|YP_001955379.1| chromosomal replication initiation protein [Bifidobacterium longum DJO10A] gi|227547513|ref|ZP_03977562.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622843|ref|ZP_04665874.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133632|ref|YP_004000971.1| dnaa [Bifidobacterium longum subsp. longum BBMN68] gi|317482359|ref|ZP_07941379.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp. 12_1_47BFAA] gi|322688192|ref|YP_004207926.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis 157F] gi|322690194|ref|YP_004219764.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JCM 1217] gi|38257643|sp|Q8G6K0|DNAA_BIFLO RecName: Full=Chromosomal replication initiator protein DnaA gi|226735779|sp|B3DP22|DNAA_BIFLD RecName: Full=Chromosomal replication initiator protein DnaA gi|23325851|gb|AAN24462.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum NCC2705] gi|189428733|gb|ACD98881.1| ATPase for DNA replication initiation [Bifidobacterium longum DJO10A] gi|227212028|gb|EEI79924.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514840|gb|EEQ54707.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis CCUG 52486] gi|311772890|gb|ADQ02378.1| DnaA [Bifidobacterium longum subsp. longum BBMN68] gi|316916239|gb|EFV37641.1| chromosomal replication initiator protein DnaA [Bifidobacterium sp. 12_1_47BFAA] gi|320455050|dbj|BAJ65672.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JCM 1217] gi|320459528|dbj|BAJ70148.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis 157F] Length = 500 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 134/500 (26%), Positives = 235/500 (47%), Gaps = 43/500 (8%) Query: 33 VNCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + I++ + LK + P W + + V + + L V N I+ Sbjct: 10 IEAAHIWSDTLTVLKHSASLSPRE-KGWLEGVVPEGVFGSTIVLCVDNNDTLQAIQGDLN 68 Query: 91 ETITKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPI-------------- 134 +++ + + +++ ++ P E + P +++SP Sbjct: 69 DSLLQALRTVTGENMFPAFKVVPKTEPEPLSEAKPAQPYPSEISPTVAEFGKESYGAKPA 128 Query: 135 -----NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 ++ +G+Q ++ + L+ F F +F+ G SNR A T A ++AE Sbjct: 129 AAPREPMPATEPQFPVGQQKMNRDPETHLNKNFTFDSFVPGDSNRFARTVALAVAEGSGQ 188 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-- 247 NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E F F A+++ Sbjct: 189 D-----FNPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTNEFIDALQNPN 243 Query: 248 ---NCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 R +D+LLIDD+QFL GK +F H N+L + K++V A+D P Sbjct: 244 QSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHQANKRIVIASDVAPK 303 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L+ + R+ SR + G++V + D E R +IL+ +++ + I +VL +A Sbjct: 304 NLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIASMNGSK-----IPSDVLDLIAER 358 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 T + REL+GA ++ S +T +A++ L T +++ DI VAK++ Sbjct: 359 FTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQDFFTTDV--EIKPTDIISQVAKYF 416 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 +++ DL+ R + V PRQ+AMYL++ MT S +IG+ FG RDHTTV+HA ++ Sbjct: 417 HLTFEDLVGKSRTKNVAVPRQIAMYLAREMTSMSLMDIGQVFGGRDHTTVMHACTRISDR 476 Query: 483 LETDITLKKEVELLKRLISE 502 ++ + V L + + Sbjct: 477 MQQKQEIYNYVMELTVRLKQ 496 >gi|125716888|ref|YP_001034021.1| chromosomal replication initiation protein [Streptococcus sanguinis SK36] gi|125496805|gb|ABN43471.1| Chromosomal replication initiator protein dnaA, putative [Streptococcus sanguinis SK36] Length = 450 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 142/472 (30%), Positives = 234/472 (49%), Gaps = 32/472 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAIIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 L-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 F+ + +I G I + + +SP I+ + P P Sbjct: 65 AGFEIFNDQIAGKYIFEEETNTETSKSVVTSPQISTVQP----------------SLPPI 108 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL Sbjct: 109 DTGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLN 163 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 164 AIGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGK 223 Query: 275 L--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 224 KVSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTA 390 +IL+N + ED + L ++A ++ R+L+GA N L+ R +T Sbjct: 284 IAILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITI 338 Query: 391 EIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL+ Sbjct: 339 DIAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLT 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 399 RELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|227494189|ref|ZP_03924505.1| DNA-directed DNA replication initiator protein [Actinomyces coleocanis DSM 15436] gi|226831923|gb|EEH64306.1| DNA-directed DNA replication initiator protein [Actinomyces coleocanis DSM 15436] Length = 464 Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 144/471 (30%), Positives = 240/471 (50%), Gaps = 20/471 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + + S L + S + + + + ++VP F K +I+ R + Sbjct: 5 SLKEAWEKAVSALNPEDAGPALKSIVSQTQVLGDIEGTILIAVPNEFAKNYIETR-QNML 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L R + I + ++ + + I N+S + Sbjct: 64 NPLLSFSMGRDVRIAITIDPELESRLQTALEEEASHESESIIANVS------APEATPVA 117 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 F S L+ ++VF TF+ GSSNR A AA AE Y NPLFI+ GLGKTHL+ Sbjct: 118 FDSRLNPKYVFDTFVIGSSNRFANAAAAQTAEQPGKVY-----NPLFIYGDSGLGKTHLI 172 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N +++ P+L+V Y+++E F F ++IR A + + R ID+LLIDD+QF+QG Sbjct: 173 QAIGNYALELAPHLKVRYVSSEEFTNDFINSIRTGRAEDFQRRYREIDILLIDDIQFIQG 232 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K EF H N+L ++ KQV+ +D PP L L+ R+RSR + G++V + + E R Sbjct: 233 KEQTVEEFFHTFNTLYNAEKQVIITSDVPPKMLSGLEDRLRSRFEMGLTVDIKPPELETR 292 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAE 391 +IL+ + L+++ EVL ++A ++++ REL+GA ++ + +T Sbjct: 293 IAILRKKTIAE-----NLDVDNEVLEYIASRISSNIRELEGALIRVTAYANLTKQEVTRS 347 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHY-NISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A+ +L +++ ++ I I +A++Y +++ L S R +T+V RQ+AMYL + Sbjct: 348 LAEVVLKDIISDPGDSEITISLIMGQIAEYYQDVTIEHLCSADRTKTLVEARQIAMYLCR 407 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG+ FG RDHTTV+HA RK+ K + + V L I Sbjct: 408 ELTDLSLPKIGQAFGGRDHTTVMHAYRKISKEINLKREIYNHVTELTSRIK 458 >gi|259500777|ref|ZP_05743679.1| DNA-directed DNA replication initiator protein [Lactobacillus iners DSM 13335] gi|302190772|ref|ZP_07267026.1| chromosomal replication initiation protein [Lactobacillus iners AB-1] gi|259167471|gb|EEW51966.1| DNA-directed DNA replication initiator protein [Lactobacillus iners DSM 13335] Length = 453 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 240/474 (50%), Gaps = 28/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYL 90 ++ E + + +K + Y +WF+ K S N + +SV + K + + Sbjct: 2 LDLEKFWQFFTDNMKKRYSEVAYNAWFKNTKPLSFDKNSKQMTISVESPVSKGYWEKNLA 61 Query: 91 ET-ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I + + I + K A + + T + P+I Sbjct: 62 SQLIQEAYAYTDMEIIPI------------FKIAGDTNSERFVVHKTQKKQKPVIENNHN 109 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGK Sbjct: 110 -EFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGK 163 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD+Q Sbjct: 164 THLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQ 223 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D Sbjct: 224 FFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPD 283 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + E L I++ L +VA V T+ REL+GA ++ + Sbjct: 284 LETRIAILRK-----KAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQAHATIERED 338 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PRQ+AMY Sbjct: 339 INLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMY 398 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K+E+ L+TD +K V LK +++ Sbjct: 399 LSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKIERSLKTDSEIKSAVYDLKAMLN 452 >gi|184154477|ref|YP_001842817.1| chromosomal replication initiation protein DnaA [Lactobacillus fermentum IFO 3956] gi|226735821|sp|B2GEU8|DNAA_LACF3 RecName: Full=Chromosomal replication initiator protein DnaA gi|183225821|dbj|BAG26337.1| chromosomal replication initiation protein DnaA [Lactobacillus fermentum IFO 3956] gi|299782686|gb|ADJ40684.1| Chromosomal replication initiator protein dnaA [Lactobacillus fermentum CECT 5716] Length = 438 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 143/471 (30%), Positives = 246/471 (52%), Gaps = 37/471 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +S++ + + + G Y + K + + + +P+ + + + + + Sbjct: 2 TELDSLWEAIQNSFRKSKGDTTYKNLIAPAKPLDFANGRLRIQLPSQYHRDFWEQ-LTDQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + + + ++ A+ P+ +P + + Sbjct: 61 VVEIVYQRTGQEIRPDYVL-----------ATDPTPLAQTP------------PRPQSTF 97 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +PL+ + F TFIEG SN +A +A + +E Y NPL I+ VGLGKTHL Sbjct: 98 KEETPLNPEYTFQTFIEGRSNMMAYASAFAASESPGDQY-----NPLLIYGGVGLGKTHL 152 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAIAN P++R+ Y+T+E FM F ++I+ + R++D LL+DD+QF Sbjct: 153 MQAIANNMKFHNPSVRIKYVTSENFMNDFVNSIKSGTQEEFRREYRDLDALLVDDIQFFA 212 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N L D+ KQ+V +D+ P E+ +L R+ SR GV V + E Sbjct: 213 SKGETQTEFFNTFNVLYDNKKQIVLTSDKDPREIPNLTERLVSRFMWGVPVEITSPALET 272 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTA 390 R +ILK S+ E+ L++ +VL VA+ + T+ REL+GA ++ VF +T Sbjct: 273 RIAILK-----SKAEEEHLDVPNDVLNFVAQRINTNVRELEGALMRIRVFSELHQQPITL 327 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L +V ET + I+ IQ+ VA +YNI+++D+ +R + +V PRQ+AMYLS+ Sbjct: 328 KLATEALQGMVANTETT-VTIDLIQKRVATYYNINQSDITGKKRTKNIVVPRQIAMYLSR 386 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG+ FG +DHTTVLHA+ K+E+ ++ D L+ ++ LK + Sbjct: 387 ELTDNSLPKIGKEFGGKDHTTVLHAIDKIERQVQEDARLQGDLVKLKNDLQ 437 >gi|403535|gb|AAA18927.1| DnaA [Caulobacter crescentus CB15] Length = 490 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 161/471 (34%), Positives = 240/471 (50%), Gaps = 14/471 (2%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++++ V LK ++G + SW V L T + WI+ I +L Sbjct: 25 NVWSKVCVALKRELGDAAFGSWIAPAMLREAATGDVVLVTSTGIARDWIRRSAWRRIGEL 84 Query: 97 FQEEHSRIQGVEILVR----SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + +++ R + A VE T + + + + + +P ++ SP Sbjct: 85 WAAHDATGRRIDLKSRLEFEAAAGAYVEATPKAVAAEPIEIVLPVSTDAPTVVAPSAKSP 144 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L RF F TF+ G +N A A+ IA + NP+ H G GKTHL Sbjct: 145 RTQ-GLQERFTFETFVPGPANEFAHAVARRIA-----NWADGHFNPVLFHGPYGFGKTHL 198 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+A +++ P RVVYLTAE F+ F A+ D K+ LR DLL+IDD+ F+ Sbjct: 199 LNALAWEAMRNAPEKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRAADLLIIDDVHFIA 258 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q E H L +L+ +VV +ADRPPS + +D +RS L G+ L D + Sbjct: 259 GKQSTQEELFHTLTALVGEGGRVVFSADRPPSAMTEMDAHLRSHLSAGLVCGLEPADRNL 318 Query: 332 RFSILKNRLAISQKEDP-KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILT 389 R IL+ ++ + +I EV+ +A T S REL+GA N L R +T Sbjct: 319 RLGILERKIQTLGAALGFEPSIRPEVMQFLADRFTDSVRELEGALNTLSARAGEGLSRMT 378 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + +L + +G K++ I+DIQ+ A+HY + + DLLS RR R V RPRQ AM+L+ Sbjct: 379 LDEVQAILRPHLRSG-EKRITIDDIQKATAEHYGMKQADLLSERRNRAVARPRQAAMWLA 437 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T RS P+IGRRFG RDHTTVLHAVR++E + D L ++E L R + Sbjct: 438 KQLTTRSLPDIGRRFGGRDHTTVLHAVRRIEALRAEDSALSHDLETLTRKL 488 >gi|306834799|ref|ZP_07467863.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] gi|304569327|gb|EFM44828.1| exopolyphosphatase [Corynebacterium accolens ATCC 49726] Length = 566 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 124/382 (32%), Positives = 201/382 (52%), Gaps = 12/382 (3%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 T+ + + + + I P + L+ + F +F+ GSSNR A AA Sbjct: 190 TSQQDYNRQQPEFGGSANAARIPREAPAHDPNRETSLNPKHTFESFVIGSSNRFANGAAV 249 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 ++AE + Y NPLFI GLGKTHLL A N + P LRV Y+++E F + Sbjct: 250 AVAENPARAY-----NPLFIWGGSGLGKTHLLHAAGNYAQVLHPGLRVKYVSSEEFTNDY 304 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADR 300 +++RD+ + K RN+D+L++DD+QFL+GK Q EF H N+L + KQ++ ++DR Sbjct: 305 INSLRDDRQESFKRRYRNLDILMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDR 364 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PP +L +L+ R+R+R +GG+ + D E R +IL + A E ++ VL + Sbjct: 365 PPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAADGTE-----VDRSVLELI 419 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A +S REL+GA ++ S + E+A+ L L +++ I + A Sbjct: 420 ASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDLAPDSADRQITAASIMEVTA 479 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++++I L + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A RK+ Sbjct: 480 EYFDIDVETLRGAGKKRAVAHARQLAMYLCRELTELSLPKIGEQFGGKDHTTVIYADRKI 539 Query: 480 EKMLETDITLKKEVELLKRLIS 501 K + E++ L + I Sbjct: 540 RKEMTEKRNTYDEIQSLTQRIK 561 >gi|154508239|ref|ZP_02043881.1| hypothetical protein ACTODO_00733 [Actinomyces odontolyticus ATCC 17982] gi|153797873|gb|EDN80293.1| hypothetical protein ACTODO_00733 [Actinomyces odontolyticus ATCC 17982] Length = 476 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 138/464 (29%), Positives = 228/464 (49%), Gaps = 21/464 (4%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 +++GP S + + + + L+VP +F K WI+++ +T R + Sbjct: 20 DELGPVA-TSMLRSARPLGDIEGTILLAVPNDFTKQWIEDKAQSKLTTALSVHLGRTVRI 78 Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP--LDSRFVFS 165 I V + E+ +P+ +P ++ +P P L+ +F F Sbjct: 79 AITVDPTLVVVTEEEEPTPAAPADAPTSSTDEDEEHHSPALVTAPTDSGPTHLNPKFTFD 138 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G SNR A AA + +E NPLFI+ GLGKTHLLQAI + ++ P Sbjct: 139 TFVIGPSNRFAHAAALAASETPGTA-----FNPLFIYGDSGLGKTHLLQAIGHNALSMMP 193 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 +L+V Y+ +E F F +AIR N N R +D+LLIDD+QF+ K Sbjct: 194 HLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQTVEG 253 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + KQ+V +D PP++L+ + R+RSR G+ V + D E R +IL Sbjct: 254 FFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAILHK- 312 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLS 398 + + L + EV +VA ++++ REL+GA ++ S + + +A +L Sbjct: 313 ----KADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQMMLK 368 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 V+ + ++ + I A ++ ++ + S+ R VV RQ+AMYL + +T S P Sbjct: 369 DFVSNPDDNEITVSLIMSQCAVYFGVTIEQMGSSERSHNVVEARQIAMYLCRELTDLSLP 428 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +IG+ FG RDHTTV+HA +K+ K+++ V L I + Sbjct: 429 KIGQAFG-RDHTTVMHANKKISKLMKEKRETFNHVSELTNRIKQ 471 >gi|296453188|ref|YP_003660331.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JDM301] gi|296182619|gb|ADG99500.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum JDM301] Length = 500 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 134/500 (26%), Positives = 235/500 (47%), Gaps = 43/500 (8%) Query: 33 VNCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + I++ + LK + P W + + V + + L V N I+ Sbjct: 10 IEAAHIWSDTLTVLKHSASLSPRE-KGWLEGVVPEGVFGSTIVLCVDNNDTLQAIQGDLN 68 Query: 91 ETITKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPI-------------- 134 +++ + + +++ ++ P + P +++SP Sbjct: 69 DSLLQALRTVTGENMFPAFKVVPKTEPEPLSAAKPTQPYPSEISPTVAEFGKESYGAKPV 128 Query: 135 -----NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 ++S +G+Q ++ + L+ F F +F+ G SNR A T A ++AE Sbjct: 129 AAPREPMPATESQFPVGQQKMNRDPETHLNKNFTFDSFVPGDSNRFARTVALAVAEGSGQ 188 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-- 247 NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E F F A+++ Sbjct: 189 D-----FNPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTNEFIDALQNPN 243 Query: 248 ---NCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 R +D+LLIDD+QFL GK +F H N+L + K++V A+D P Sbjct: 244 QSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHQANKRIVIASDVAPK 303 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L+ + R+ SR + G++V + D E R +IL+ +++ + I +VL +A Sbjct: 304 NLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIASMNGSK-----IPSDVLDLIAER 358 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 T + REL+GA ++ S +T +A++ L T +++ DI VAK++ Sbjct: 359 FTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQDFFTTDV--EIKPTDIISQVAKYF 416 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 +++ DL+ R + V PRQ+AMYL++ MT S +IG+ FG RDHTTV+HA ++ Sbjct: 417 HLTFEDLVGKSRTKNVAVPRQIAMYLAREMTSMSLMDIGQVFGGRDHTTVMHACTRISDR 476 Query: 483 LETDITLKKEVELLKRLISE 502 ++ + V L + + Sbjct: 477 MQQKQEIYNYVMELTVRLKQ 496 >gi|291455692|ref|ZP_06595082.1| putative replication initiator protein [Bifidobacterium breve DSM 20213] gi|291382620|gb|EFE90138.1| putative replication initiator protein [Bifidobacterium breve DSM 20213] Length = 488 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 141/493 (28%), Positives = 230/493 (46%), Gaps = 40/493 (8%) Query: 33 VNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + I++ + LK + W + + V + + L V N I+ Sbjct: 10 IEAAHIWSNTLTLLKRNSTLTARE-KGWLEGIVPEGVFGSTIVLCVDNNDTLQAIQGNLN 68 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP-------- 142 E++ + V +P E SP T SP T+ K P Sbjct: 69 ESLLQALHTATGENMFPAFKV----VPRSEPQPVSPYPTNASPTLTDFGKEPYGAPEPVI 124 Query: 143 ------IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + +Q ++ + L+ F F +F+ G SNR A T A ++AE Sbjct: 125 PAVEQQFSVPQQKMNRDPETHLNKSFTFDSFVPGDSNRFARTVALAVAEGSGQD-----F 179 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-----NCAL 251 NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E F F A+++ Sbjct: 180 NPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTNDFIDALQNTNQSQGQIA 239 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 R +D+LLIDD+QFL GK +F H NSL + K++V A+D P L+ + Sbjct: 240 EFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNSLHQANKRIVIASDVAPKNLKGFEA 299 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+ SR + G++V + D E R +IL+ A++ + I +VL +A T + RE Sbjct: 300 RLISRFESGLTVDVKPPDLETRIAILRMIAAMNGSK-----IPNDVLDLIAERFTENIRE 354 Query: 371 LDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 L+GA ++ S +T +A++ L T +++ DI VAK+++++ D+ Sbjct: 355 LEGALTRVTAVASLSNQPVTRALAEQTLQDFFTTDV--EIKPTDIIGQVAKYFHLTFEDI 412 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 + + R + VV PRQ+AMYL++ MT S +IG FG RDHTTV+HA ++ ++ + Sbjct: 413 VGSSRTKNVVIPRQIAMYLAREMTSMSLMDIGEVFGGRDHTTVMHACTRIGDKMQQKQEI 472 Query: 490 KKEVELLKRLISE 502 V L + + Sbjct: 473 YNYVMELTVRLKQ 485 >gi|213690929|ref|YP_002321515.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254777888|sp|B7GSF9|DNAA_BIFLS RecName: Full=Chromosomal replication initiator protein DnaA gi|213522390|gb|ACJ51137.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] gi|291517733|emb|CBK71349.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. longum F8] gi|320456975|dbj|BAJ67596.1| chromosomal replication initiator protein DnaA [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 500 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 134/500 (26%), Positives = 235/500 (47%), Gaps = 43/500 (8%) Query: 33 VNCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + I++ + LK + P W + + V + + L V N I+ Sbjct: 10 IEAAHIWSDTLTVLKHSASLSPRE-KGWLEGVVPEGVFGSTIVLCVDNNDTLQAIQGDLN 68 Query: 91 ETITKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPI-------------- 134 +++ + + +++ ++ P + P +++SP Sbjct: 69 DSLLQALRTVTGENMFPAFKVVPKTEPEPLSAAKPAQPYPSEISPTVAEFGKESYGAKPV 128 Query: 135 -----NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 ++S +G+Q ++ + L+ F F +F+ G SNR A T A ++AE Sbjct: 129 AAPREPMPATESQFPVGQQKMNRDPETHLNKNFTFDSFVPGDSNRFARTVALAVAEGSGQ 188 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-- 247 NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E F F A+++ Sbjct: 189 D-----FNPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTNEFIDALQNPN 243 Query: 248 ---NCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 R +D+LLIDD+QFL GK +F H N+L + K++V A+D P Sbjct: 244 QSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHQANKRIVIASDVAPK 303 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L+ + R+ SR + G++V + D E R +IL+ +++ + I +VL +A Sbjct: 304 NLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIASMNGSK-----IPSDVLDLIAER 358 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 T + REL+GA ++ S +T +A++ L T +++ DI VAK++ Sbjct: 359 FTENIRELEGALTRVTAVASLSNQPVTRALAEQTLQDFFTTDV--EIKPTDIISQVAKYF 416 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 +++ DL+ R + V PRQ+AMYL++ MT S +IG+ FG RDHTTV+HA ++ Sbjct: 417 HLTFEDLVGKSRTKNVAVPRQIAMYLAREMTSMSLMDIGQVFGGRDHTTVMHACTRISDR 476 Query: 483 LETDITLKKEVELLKRLISE 502 ++ + V L + + Sbjct: 477 MQQKQEIYNYVMELTVRLKQ 496 >gi|119964126|ref|YP_945834.1| chromosomal replication initiator protein DnaA [Arthrobacter aurescens TC1] gi|119950985|gb|ABM09896.1| chromosomal replication initiator protein DnaA [Arthrobacter aurescens TC1] Length = 472 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 134/484 (27%), Positives = 236/484 (48%), Gaps = 22/484 (4%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLK--NQVGPDVYASWFQRL-KFHSVLHNIVHLSVPTNF 80 + VD+ S + V S ++ ++V P F L + ++ + + ++VP Sbjct: 1 MTVDEANHANTVGSSWRRVLSLMEQDDRVSPRQ--RGFVILAQAQGLIGSTLLVAVPNEL 58 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 + ++ + + + + S I V + +P + + ++ +S Sbjct: 59 TREVLQTQVKDALDDALRNVFSDDIRCAIDVDTDLVPVHAEPEPAVELSSVSDF-----A 113 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 P + L+ +++F TF+ GSSNR A V NPLF Sbjct: 114 EPKPQPTPPSTSHEFGRLNPKYIFDTFVIGSSNRF-----AHAAAVAVAEAPAKAYNPLF 168 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ GLGKTHLL AI + + + +RV Y+ +E F F ++IRD+ + K + RN+ Sbjct: 169 IYGDSGLGKTHLLHAIGHYARRLYSGIRVRYVNSEEFTNDFINSIRDDEGTSFKTTYRNV 228 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LLIDD+QFL GK Q EF H N+L ++ KQVV +D+PP L + R+ SR + G Sbjct: 229 DVLLIDDIQFLAGKDRTQEEFFHTFNALHNANKQVVITSDQPPKMLAGFEDRMTSRFEWG 288 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + + + E R +IL+ + L+ ++ L ++A ++++ REL+GA ++ Sbjct: 289 LLTDIQPPELETRIAILRK-----KGLSEGLSAPDDALEYIASKISSNIRELEGALIRVT 343 Query: 380 FRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 S + +A+ +L L+ +++ + I A ++ +S +L S R RT+ Sbjct: 344 AFASLNRQPVDVALAEMVLKDLITDDGAQEITAKQILDQTADYFKLSMEELCSKSRTRTL 403 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ + +V L Sbjct: 404 VTARQIAMYLCRELTDMSLPKIGQELGGRDHTTVIHADRKIRELMAERRVIYNQVTELTN 463 Query: 499 LISE 502 I + Sbjct: 464 RIKQ 467 >gi|118589254|ref|ZP_01546660.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] gi|118437954|gb|EAV44589.1| chromosomal replication initiation protein [Stappia aggregata IAM 12614] Length = 491 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 188/496 (37%), Positives = 291/496 (58%), Gaps = 26/496 (5%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 ++ + + + V L+N++G DV+++WF R+ + V LSVPT FLK Sbjct: 1 MEATMQVQNLAGSDQWDRVKKELRNELGDDVFSNWFGRVNHEETTGDAVRLSVPTRFLKN 60 Query: 84 WIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP---SITKLSPINTNISK 140 WI+N Y + + L++ E I +E+ VR P T +P S ++S + Sbjct: 61 WIQNNYEKQLVGLWKREQDAINRIELTVRGALRPRQITTGLAPKAISARRISGRPGPFAS 120 Query: 141 SPIILGK---------------QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 +P + G+ L+ + F TF EG+SN +A A + +A Sbjct: 121 TPQFGASYGVPVIPCLADSNEDAAADFLNGASLNPKLTFDTFAEGASNSLACAAVRQMA- 179 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 L+ L+IH++ G+GKTHLLQA A+ + R+ +V YL+AE+FM+ A+ Sbjct: 180 ----AGHQGTLDMLYIHSATGIGKTHLLQAAASEA--RKTGRQVAYLSAEFFMYHLVPAL 233 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 R L+ ++R+IDLLL+DD+QFL GK EF L L++S Q++ AADRP +L Sbjct: 234 RTPAFPILRQAMRSIDLLLVDDLQFLHGKQAAEEFSKTLELLMESPSQIIMAADRPAEDL 293 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 ++L +R R+Q G V + DY +R ILK R+ +++ P ++ E+V ++AR V Sbjct: 294 DTLGDALRFRIQKGEVVGIQATDYALRHDILKKRINAARRTHPGFSVPEDVADYIARYVI 353 Query: 366 TSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 S R+L+GA N+L + +T ++A++ L LV GE + +++E+IQ++V KH+++ Sbjct: 354 ASARDLEGALNRLFAHNQLTKQPVTMDLAEKTLHDLVRIGEPRSIKVEEIQQVVCKHFSV 413 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 ++ DLLS+ R RT+VRPRQ+AMY++K+MT RS PEIGRRFG+RDHTTVLHAVRK+E M+ Sbjct: 414 TKADLLSSCRARTLVRPRQIAMYIAKVMTGRSLPEIGRRFGNRDHTTVLHAVRKIEDMVT 473 Query: 485 TDITLKKEVELLKRLI 500 D L +EVELLKRLI Sbjct: 474 KDKALAQEVELLKRLI 489 >gi|307699978|ref|ZP_07637029.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris FB024-16] gi|307615016|gb|EFN94234.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris FB024-16] Length = 516 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 137/482 (28%), Positives = 230/482 (47%), Gaps = 49/482 (10%) Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL-- 116 ++ K + + L+VP +K I +Y + F + + ++ L Sbjct: 37 LRQSKALAHNEDAAVLAVPGTMVKGIIDAKYTPDLKAAFSKILGKTINNLVITVDEGLVK 96 Query: 117 --PSVEKTASSPSITKLSPINTNISKSPIILG---------------------------- 146 P+ A+ +I SP+ + +P Sbjct: 97 QNPATTPGATPKNIGITSPLTSPNGMAPRENNPNLENPNPNPSLTTPNTTPTGNLANPAT 156 Query: 147 -----KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 ++ + L+ + F +F+ GSSN AA+S+ + Y NPLFI Sbjct: 157 IPAPIPASMQIDRNTGLNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAY-----NPLFI 211 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL AI N +++ P +V Y+++E F F +AI L+ R +D Sbjct: 212 YGGSGLGKTHLLHAIGNYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREVD 271 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LLIDD+QFLQGK EF H N+L + KQVV +D PP EL+S + RI+SRL+ G+ Sbjct: 272 FLLIDDIQFLQGKEQTLEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWGL 331 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + + E R +IL+ + A + ++ VL ++A ++++ REL+GA ++ Sbjct: 332 LTDIQPPNLETRIAILRRKSAQENLQ----GYDDAVLEYIASNISSNIRELEGALLRVTA 387 Query: 381 RHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 + ++ + A E+L + T+ + + I A+++ + ++++S R RTV Sbjct: 388 YAALSGGGSVSLDTAKEILRDFITGRNTRDITPQMIIEQTAQYFGLEVDEIMSTDRSRTV 447 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V RQVAMYL + +T S P++G FG RDHTTV+HAV+K+EK + D + + + Sbjct: 448 VNSRQVAMYLCRELTELSLPKVGEAFGGRDHTTVMHAVKKIEKTINEDSQTYQSITEITN 507 Query: 499 LI 500 I Sbjct: 508 QI 509 >gi|161611268|ref|YP_294227.2| chromosomal replication initiation protein [Ralstonia eutropha JMP134] Length = 584 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 130/408 (31%), Positives = 208/408 (50%), Gaps = 17/408 (4%) Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN----TNISKSPIILGKQTISPVFG 155 + I V++ VA S P + + P + + + Sbjct: 187 DMGEIDVVQMDPSEVAARSYRMQPQQPPMQSGPMVQHPGPGGPGAQPGQPSQASDTVHER 246 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ F F+ G +N++A AA +A Y NPL+++ VGLGKTHL+ A Sbjct: 247 SRLNPILTFDNFVTGKANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHA 301 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N + P R+ Y+ AE ++ A + K ++DLLLIDD+QF GK Sbjct: 302 IGNFMLMENPRARIRYIHAEQYVSDVVKAYQRKAFDEFKRYYHSLDLLLIDDIQFFSGKN 361 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR + Sbjct: 362 RTQEEFFYAFEALIANRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVA 421 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL + + +++ EEV VA+ + ++ REL+GA +++ +F +T E+ Sbjct: 422 IL-----MKKAAAENVSVPEEVAFFVAKHLRSNVRELEGALRKILAFSNFHGRDITIEVT 476 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L L+ T + +++ +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T Sbjct: 477 REALKDLL-TVQNRQISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELT 535 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 536 QKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 583 Score = 74.3 bits (181), Expect = 4e-11, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN--IVHLSVPTNFLKAWIKNRYLETI 93 + + +++L+ ++ P + +W + L + ++ P F W+K+++ I Sbjct: 2 QDFWQAAAAQLERELTPQQFKTWIKPLAPVGFDEEALTLRIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRS 113 T L E V ++ Sbjct: 62 TALACEYWEAQVSVHFVLDP 81 >gi|162448270|ref|YP_001610637.1| chromosomal replication initiator protein DnaA [Sorangium cellulosum 'So ce 56'] gi|161158852|emb|CAN90157.1| chromosomal replication initiator protein DnaA [Sorangium cellulosum 'So ce 56'] Length = 471 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 137/473 (28%), Positives = 241/473 (50%), Gaps = 19/473 (4%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +F + + P + WF ++F + ++ L V F+ W+++ +L +T Sbjct: 10 EVFDRAIEHTRA-LSPATFDQWFGGVQFDDLTDGVLTLRVQNEFVLEWVRDNFLPALTDK 68 Query: 97 FQEEHS----RIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +E V+ + + VE T P + P + + +P P Sbjct: 69 IRELTGWSVQVAWTVDQNLDAPIAQRVELTPVRPRALVVRPTSAAPAPAPRPEPALRRVP 128 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ + F++F+ G SN++ A + + G R NPLFI GLGKTHL Sbjct: 129 SMPDDLNPKHTFASFVVGPSNQL-----AHAAAIAAAGGGGRRYNPLFICGGTGLGKTHL 183 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFL 271 + AIA+ + +P+ R++Y++AE F F +AI+ + + R+ D+LL+DD+QFL Sbjct: 184 MHAIAHRVFEGRPDARIIYVSAEKFTNDFITAIQHHRMDEFRTRYRSSCDVLLVDDIQFL 243 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 G+ Q EF H N+L +Q+V +D+ P LE ++ R+ SR G+ + + + E Sbjct: 244 AGREQTQEEFFHTFNALHTLDRQIVVTSDKYPQNLERMEERLVSRFSWGLVADIQVPELE 303 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +I++N+ A+ + + ++V +++A+ V ++ REL+G +L + S + Sbjct: 304 TRVAIVRNKAALE-----GIALTDDVALYLAQMVRSNVRELEGTLIRLAAKSSLTGRPVD 358 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A ++ + + M +EDIQR V H+++ DL S R ++V R VAMYL Sbjct: 359 LPFARAEITAT-SPPRAQMMSVEDIQRAVCHHFHLRSIDLTSKDRHKSVAFARHVAMYLC 417 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K SFPEIGR FG+RDHTTV+ AVRK+E ++D ++ +E L++ +++ Sbjct: 418 KQRLKCSFPEIGRAFGNRDHTTVMSAVRKIEAQRDSDPQVRAHLEALEKKLAD 470 >gi|6226596|sp|P49990|DNAA_MYCAV RecName: Full=Chromosomal replication initiator protein DnaA gi|3953448|gb|AAC83390.1| DnaA [Mycobacterium avium] Length = 508 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 136/508 (26%), Positives = 247/508 (48%), Gaps = 56/508 (11%) Query: 37 SIFTIVSSRLKNQ---------------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL 81 +++ V S L + + P +W ++ +++ LSVP++F+ Sbjct: 11 TVWNAVVSELNGEPVADAEPNRTTLVTPLTPQQ-RAWLNLVRPLTIVEGFALLSVPSSFV 69 Query: 82 KAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS 141 + I+ IT + +++ VR P + A PS + ++S Sbjct: 70 QNEIERHLRAPITDALSRRLGQ--QIQLGVRIAPPPDDVEDALIPSAEPFPDTDADLSAR 127 Query: 142 PIILGKQT-------------------------ISPVFGSPLDSRFVFSTFIEGSSNRVA 176 + + + G+ L+ R+ F TF+ G+SNR A Sbjct: 128 RRTDSRASGERGAVTNTQPGWTNYFTERPHAIDPAVAAGTSLNRRYTFDTFVIGASNRFA 187 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A +IAE + Y NPLFI GLGKTHLL A N + + P +RV Y++ E Sbjct: 188 HAAVLAIAEAPARAY-----NPLFIWGESGLGKTHLLHAAGNYAQRFFPGMRVKYVSTEE 242 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVV 295 F F +++RD+ + K ++R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V Sbjct: 243 FTNDFINSLRDDRKVPFKRTIRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIV 302 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L + ++ Sbjct: 303 ISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPDD 357 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDI 414 VL +A ++ + REL+GA ++ S + +A+ +L L+ T ++ I Sbjct: 358 VLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLIADASTMQISAATI 417 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 A++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTT+++ Sbjct: 418 MAATAEYFDTTVVELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTLMY 476 Query: 475 AVRKVEKMLETDITLKKEVELLKRLISE 502 RK+ + V+ L I + Sbjct: 477 GQRKILSEMAERRGGFDHVKELTTRIRQ 504 >gi|259502130|ref|ZP_05745032.1| DNA-directed DNA replication initiator protein [Lactobacillus antri DSM 16041] gi|259169943|gb|EEW54438.1| DNA-directed DNA replication initiator protein [Lactobacillus antri DSM 16041] Length = 435 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 145/471 (30%), Positives = 240/471 (50%), Gaps = 40/471 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +S++ + + + G + ++ K S+ + + +PT + + E Sbjct: 2 TELDSLWEAIQNSFRQYTGQVTFDNFIAPAKPISLSQTRLEIELPTPMHRDFWNKNLTEK 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + Q E R + P+ + + T +P Sbjct: 62 LKEYVQRELGR--------------------------AVEPLYVLTGEQKSPKPQATATP 95 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 PL+ + F TF+ G N++A AA + AE + +NPLFI+ VGLGKTHL Sbjct: 96 TSNIPLNPYYNFETFVVGDGNKIANAAALNAAERPGY------MNPLFIYGGVGLGKTHL 149 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 ++AI N +K N RV Y+T+E F F ++I+ ++ RN+DLLLIDD+QFL Sbjct: 150 MEAIGNYMLKINQNARVKYVTSEEFTNDFINSIQKRTTEQFREEYRNLDLLLIDDIQFLA 209 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N+L D KQ+V +DR P E+ L R+ SR G+ V + D E Sbjct: 210 DKEGTQIEFFNTFNTLYDQQKQIVLTSDRMPREIPELQDRLVSRFMWGMPVEITPPDLET 269 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTA 390 R +IL+ S+ E+ ++I + L ++A + T+ REL+GA ++ I+T Sbjct: 270 RIAILR-----SKVEEDHIDIGNDTLNYIAGQIDTNVRELEGALTKVQVYADLNNEIITP 324 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A L +++ +EDIQ+ VA YNI++ D++ +RV+ +V PRQ+AMYL++ Sbjct: 325 HLASRALKDF-RHSAKRQITVEDIQKQVASFYNITQADIIGKKRVKQIVMPRQIAMYLTR 383 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG+ FG +DHTTVLHA+ K+E ++ D L+K++ LK ++ Sbjct: 384 ELTDFSLPKIGKEFGGKDHTTVLHAIDKIEASIKDDSQLQKDIHKLKDQLN 434 >gi|288904224|ref|YP_003429445.1| Chromosomal replication initiator protein DnaA [Streptococcus gallolyticus UCN34] gi|306832484|ref|ZP_07465636.1| DNA-directed DNA replication initiator protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977201|ref|YP_004286917.1| Chromosomal replication initiator protein dnaA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730949|emb|CBI12493.1| Chromosomal replication initiator protein DnaA [Streptococcus gallolyticus UCN34] gi|304425384|gb|EFM28504.1| DNA-directed DNA replication initiator protein [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177129|emb|CBZ47173.1| Chromosomal replication initiator protein dnaA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 451 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 142/477 (29%), Positives = 242/477 (50%), Gaps = 32/477 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + ++ V K+Q+ Y + + + N + YL Sbjct: 1 MTENEQIFWSRVLELAKSQLKQATYEFFVLDARLIQIEQNTATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF +++ + + V +T + + T P ++ Sbjct: 47 DPMKELFWDKNLKPIILTAGFEVYNAEIVVNYVFEEDLTNQTGVVTTSQTVPTT--QKNT 104 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P+ S L++++ F F++G NR A +A+ ++A+ Y NPLFI GLGKT Sbjct: 105 LPLVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTY-----NPLFIWGGPGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI NA ++ PN RV Y+TAE F+ F IR + LK+ RN+D+LLIDD+Q Sbjct: 160 HLLNAIGNAVLQNNPNARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLIDDIQS 219 Query: 271 LQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L K Q EF + N+L D+ KQ+V +DR P L++L+ R+ +R + G+++ + Sbjct: 220 LAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTINITPP 279 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + S I Sbjct: 280 DFETRVAILTN-----KTQEYNYIFPQDTIEYLAGQFDSNVRDLEGALKDISLVASIKKI 334 Query: 388 --LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T ++A E + G + I++IQ V K Y ++ ++ + +R + +V RQV Sbjct: 335 ETITVDVAAEAIRARKQDGPKMTVIPIDEIQSQVGKFYGVTVKEIKATKRTQDIVLARQV 394 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E+E +K I Sbjct: 395 AMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIETIKNKIK 451 >gi|323357956|ref|YP_004224352.1| ATPase [Microbacterium testaceum StLB037] gi|323274327|dbj|BAJ74472.1| ATPase [Microbacterium testaceum StLB037] Length = 471 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 132/468 (28%), Positives = 230/468 (49%), Gaps = 16/468 (3%) Query: 38 IFTIVSSRL--KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ V L +V P ++ + V+ ++L VP + A + R I + Sbjct: 11 VWSAVLDHLLEDERVTPQLHG-FLNLAVPQGVMGGTLYLDVPNDLTAAQMNKRMRAPILE 69 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI-SPVF 154 + V V ++ S+ S + +P T+ S P + + + Sbjct: 70 ALTQVQGPDPEVNAFRVVVNPDLIDSPRSASSDDRPAPAPTSHSLIPEQAPEPIVPASRS 129 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ ++ F F+ G SNR A V NPLFI+ GLGKTHLL Sbjct: 130 DTRLNPKYTFDNFVIGQSNRF-----AHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLH 184 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + +RV Y+++E F F ++I +N + R++D+LLIDD+QFLQG+ Sbjct: 185 AIGDYAASMYAGIRVRYVSSEEFTNDFINSIANNRGSAFQARYRDVDILLIDDIQFLQGR 244 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q F H N+L D KQVV +D PP +L + R+RSR + G+ + D E R Sbjct: 245 AETQEAFFHTFNTLHDHDKQVVITSDLPPKQLTGFEDRMRSRFEWGLITDVQAPDLETRI 304 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ + + +L I ++VL ++A V+++ REL+GA ++ S L + Sbjct: 305 AILRK-----KAQSERLLIPDDVLEYIATVVSSNIRELEGALIRVSAFASLNRSTLDMSL 359 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A +L +++ + + DI A+++ +S +DL + R + V RQ+AMYL + Sbjct: 360 AQTVLRDIIDQDDANVVSPTDIITATAQYFKLSVDDLYGSSRSQAVATARQIAMYLCRER 419 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S P+IG+ FG+RDHTTV++A +K+ +++ ++ +V + + Sbjct: 420 TSLSLPKIGQLFGNRDHTTVMYAYKKISDLMKERRSIFNQVSEITSQL 467 >gi|144149|gb|AAA73149.1| dnaA [Buchnera aphidicola] Length = 431 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 148/447 (33%), Positives = 246/447 (55%), Gaps = 19/447 (4%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVAL 116 W + LK + +NI+ + P F+ W+K++YL K+ Q+ + V Sbjct: 1 MWIRSLKA-KLNNNILEIYAPNQFILDWVKDKYLIHFKKILQDFCGS--NSPFIKFKVYQ 57 Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 S EK + K+ +N I + K++ S ++ + F FIEG SN++A Sbjct: 58 TSKEKKFKKNILQKIQNLNAKPIWDKIPIFKKS---SHRSNINKKHSFENFIEGKSNQLA 114 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ + Y NPLF++ GLGKTHLL AI N + + N++++Y+ +E Sbjct: 115 RAAASQVAKNPGNSY-----NPLFLYGGTGLGKTHLLHAIGNGILAYKYNVKIIYMHSER 169 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 F+ A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ Sbjct: 170 FVQDMVKALQNNAIEKFKLYYRSVDALLIDDIQFFAHKERSQEEFFHTFNALLEGNQQII 229 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +DR P E+ ++ R++SR G++V + + E R +IL I + ++ + +++E Sbjct: 230 LTSDRYPKEINGVEDRLKSRFGWGLTVAIDPPELETRVAIL-----IKKADENNIVLSDE 284 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDI 414 V +A+ + ++ REL+GA N+++ +F +T E E L ++ K + I +I Sbjct: 285 VAFFIAKHLRSNVRELEGALNRVIVNANFTHRSITVEFVREALRDILALQ-EKLVTIANI 343 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 Q+ VA++Y I DLLS RR R+V RPRQ+AM ++K +T S PEIG F RDHTTVLH Sbjct: 344 QKTVAEYYKIKVADLLSRRRSRSVARPRQMAMAMAKELTNHSLPEIGDAFSGRDHTTVLH 403 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+E++ + + +K++ L R +S Sbjct: 404 ACRKIEQLRKENHDIKEDFSNLIRTLS 430 >gi|332363606|gb|EGJ41387.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1059] Length = 450 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 142/471 (30%), Positives = 235/471 (49%), Gaps = 30/471 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAVIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 G EI +A + + ++ +K ++ SP I Q P Sbjct: 65 A---------GFEIFNDQIAGKYIFEEETNTETSK------SVVTSPQISTVQLSLPPID 109 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 110 TGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 165 IGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKK 224 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 225 VSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRI 284 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + E+ + L ++A ++ R+L+GA N L+ R +T + Sbjct: 285 AILRN-----KIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITID 339 Query: 392 IADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL++ Sbjct: 340 IAAEAIRARKQDSSQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLTR 399 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 400 ELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|300778760|ref|ZP_07088618.1| DNA-directed DNA replication initiator protein [Chryseobacterium gleum ATCC 35910] gi|300504270|gb|EFK35410.1| DNA-directed DNA replication initiator protein [Chryseobacterium gleum ATCC 35910] Length = 484 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 126/494 (25%), Positives = 234/494 (47%), Gaps = 32/494 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVG-----------PDVYASWFQRLKFHSVLHNIVHLSVPTN 79 ++ N I+ +++ + + F +++ S++ N + L VP++ Sbjct: 1 MDDNLMMIWQKCLQFMRDNLNAAEDNSDLKKLEKSFDMLFDKVQPLSLVANNLTLIVPSD 60 Query: 80 FLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNIS 139 F K +I++ YL ++ ++ + + V EK + + P Sbjct: 61 FYKEYIEDNYLSLLSAALKKNIGKGVKLWYSVMENRPKGEEKPVTMNIKGQSVPTPKTQE 120 Query: 140 KSPIILGKQTISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 P ++P S L + F +++EG SN+ A T A+SIA+ Sbjct: 121 TMPQGFSANIVNPFVVPGIRKVNIDSNLKPDYSFDSYVEGESNKFAATVARSIAKRPG-- 178 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 NPLF++ G+GKTHL QA+ + P+ V+YL++E F+ +F SA + + Sbjct: 179 --ATAFNPLFLYGGYGVGKTHLGQAVGLEVKNQFPDKVVLYLSSEKFIQQFISAAKAHKQ 236 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 + + +D+L+IDD+QFL GK Q F H+ + L + KQ++ +D+ P+++ + Sbjct: 237 TEFANFYQMVDVLIIDDIQFLSGKSATQDSFFHIFDHLHQNGKQIILTSDKAPADIMDIQ 296 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 RI SR + G+S + D R I++ + + + ++L +A T+ R Sbjct: 297 DRIVSRFKWGLSAEIKSPDLSTRRQIIE-----DKLSRDGIVLPGDMLDFLAAEAKTNVR 351 Query: 370 ELDGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL G N ++ + + L+ E+ E ++ + + K + I IQ +V ++ I + Sbjct: 352 ELIGVINSVIAYSTVYKRDLSLELLKETINR-IAANQKKVINIPYIQEVVCDYFGIKKEQ 410 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 LLS R R + PRQ+AMY SK T +F +IG G +DH+TV++A ++ + + D Sbjct: 411 LLSKTRKREIALPRQLAMYFSKEFTNSTFTKIGEEMGGKDHSTVMYACDTIKDVSKIDKE 470 Query: 489 LKKEVELLKRLISE 502 +KK V+ L I + Sbjct: 471 IKKYVKDLTERIKQ 484 >gi|296283101|ref|ZP_06861099.1| chromosomal replication initiation protein [Citromicrobium bathyomarinum JL354] Length = 484 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 159/486 (32%), Positives = 265/486 (54%), Gaps = 22/486 (4%) Query: 19 EKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SV 76 K D+++ L + + +S+ L+ +G +++ W + ++ L + Sbjct: 15 AKGEGEDMERVALAAD----WDDISTGLRKDLGHQLHSQWIKPIQLGEFDSETGTLALYL 70 Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 P+ F W++ + + ++ ++ S I+ V I V PS ++ A P N Sbjct: 71 PSEFAAEWVRKHFADRLSLAWKIMRSEIKTVAIEVH----PSRKRMADISLGDSRRPAND 126 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + G LD+ F+ F+ G +N +A AAQ +A + + Sbjct: 127 GPELRVVSDGGFGDPGFSSVGLDASLTFAAFVTGDANVLARNAAQRMAANEKP-----QF 181 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 +PL+I A+ G GKTHLL AI + + + P R+ Y +AE FM F A++ N + K Sbjct: 182 SPLYIKAATGQGKTHLLHAIGHQFLSQHPRARIFYCSAERFMVEFVQALKQNRMIEFKTR 241 Query: 257 LRNIDLLLIDDMQFLQGKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 LR DLLL+DD+QF+ GK Q E + ++ LL K++V AADR P L+S++PR+ SR Sbjct: 242 LRGFDLLLVDDLQFIIGKASAQEELLYTIDHLLSEGKRLVFAADRAPQALDSVEPRLLSR 301 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 L G+ + D E+R SIL+++L L++ ++V+ +ART+T + REL G Sbjct: 302 LSMGLVADIQPADLELRRSILESKL----TRFAPLSVPDDVVDFLARTITRNVRELVGGL 357 Query: 376 NQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 N+L+ ++ ++A+E L+ ++ + +++ I++IQR V + Y I R+++ S RR Sbjct: 358 NKLIAYAQLTGQPVSLQLAEEQLTDIL-SANRRRITIDEIQRTVCQFYRIDRSEMSSKRR 416 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R VVRPRQVAMYLSK++TPRS+PEIGR+FG RDH+TV+HAV+ +E + D + +V Sbjct: 417 TRAVVRPRQVAMYLSKVLTPRSYPEIGRKFGGRDHSTVIHAVKLIEDLRTRDADMDGDVR 476 Query: 495 LLKRLI 500 L R + Sbjct: 477 SLLRQL 482 >gi|163790919|ref|ZP_02185342.1| chromosomal replication initiator protein DnaA [Carnobacterium sp. AT7] gi|159873761|gb|EDP67842.1| chromosomal replication initiator protein DnaA [Carnobacterium sp. AT7] Length = 358 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 124/347 (35%), Positives = 203/347 (58%), Gaps = 12/347 (3%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L++++ F TF+ G N++A AA +AE Y NPLF + VGLGKTHL+ AI Sbjct: 22 QLNTKYTFDTFVIGKGNQMAHAAALVVAEEPGTIY-----NPLFFYGGVGLGKTHLMHAI 76 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + P+ RV Y+++E F F ++I++ ++ R++DLLL+DD+QF K Sbjct: 77 GHQMLLLNPDARVKYVSSETFANDFINSIQNKTQEKFRNEYRSVDLLLVDDIQFFADKEG 136 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L D KQ+V +DR P+E+ L R+ SR G+SV + D E R +I Sbjct: 137 TQEEFFHTFNALYDDRKQIVLTSDRLPNEIPKLQERLVSRFAWGLSVDITPPDLETRIAI 196 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIAD 394 L+ + + E I + L ++A + ++ REL+GA ++ + + +T +A Sbjct: 197 LRKKANAERLE-----IPGDTLSYIAGQIDSNIRELEGALVRVQAYAAIESRDITTSLAA 251 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L ++ + + + I DIQ+ V+K+Y +S DL +R++++V PRQ+AMYLS+ +T Sbjct: 252 DALKSMLPSAKPTTLTILDIQQAVSKYYQLSIADLKGKKRIKSIVLPRQIAMYLSRELTS 311 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P+IG FG +DHTTV+HA K+ L +D LK+E+ LK+ ++ Sbjct: 312 NSLPKIGAEFGGKDHTTVIHAYEKIVHALTSDDQLKQEITDLKKKLT 358 >gi|227514119|ref|ZP_03944168.1| DNA-directed DNA replication initiator protein [Lactobacillus fermentum ATCC 14931] gi|260662538|ref|ZP_05863433.1| chromosomal replication initiator protein DnaA [Lactobacillus fermentum 28-3-CHN] gi|227087490|gb|EEI22802.1| DNA-directed DNA replication initiator protein [Lactobacillus fermentum ATCC 14931] gi|260553229|gb|EEX26172.1| chromosomal replication initiator protein DnaA [Lactobacillus fermentum 28-3-CHN] Length = 438 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 143/471 (30%), Positives = 246/471 (52%), Gaps = 37/471 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +S++ + + + G Y + K + + + +P+ + + + + + Sbjct: 2 TELDSLWEAIQNSFRKSKGDTTYKNLIAPAKPLDFANGRLRIQLPSQYHRDFWEQ-LTDQ 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + + + ++ A+ P+ +P + + Sbjct: 61 VVEIVYQRTGQEIRPDYVL-----------ATDPTPLAQTP------------PRPQSTF 97 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +PL+ + F TFIEG SN +A +A + +E Y NPL I+ VGLGKTHL Sbjct: 98 KEETPLNPEYTFQTFIEGRSNMMAYASAFAASESPGDQY-----NPLLIYGGVGLGKTHL 152 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAIAN P++R+ Y+T+E FM F ++I+ + R++D LL+DD+QF Sbjct: 153 MQAIANNMKFHNPSVRIKYVTSENFMNDFVNSIKSGTQEEFRREYRDLDALLVDDIQFFA 212 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N L D+ KQ+V +D+ P E+ +L R+ SR GV V + E Sbjct: 213 SKGETQTEFFNTFNVLYDNKKQIVLTSDKDPREIPNLTARLVSRFMWGVPVEITSPALET 272 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTA 390 R +ILK S+ E+ L++ +VL VA+ + T+ REL+GA ++ VF +T Sbjct: 273 RIAILK-----SKAEEEHLDVPNDVLNFVAQRINTNVRELEGALMRIRVFSELHQQPITL 327 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 ++A E L +V ET + I+ IQ+ VA +YNI+++D+ +R + +V PRQ+AMYLS+ Sbjct: 328 KLATEALQGMVANTETT-VTIDLIQKRVATYYNINQSDITGKKRTKNIVVPRQIAMYLSR 386 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG+ FG +DHTTVLHA+ K+E+ ++ D L+ ++ LK + Sbjct: 387 ELTDNSLPKIGKEFGGKDHTTVLHAIDKIERQVQEDARLQGDLVKLKNDLQ 437 >gi|167643974|ref|YP_001681637.1| chromosomal replication initiation protein [Caulobacter sp. K31] gi|189044631|sp|B0T135|DNAA_CAUSK RecName: Full=Chromosomal replication initiator protein DnaA gi|167346404|gb|ABZ69139.1| chromosomal replication initiator protein DnaA [Caulobacter sp. K31] Length = 487 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 156/468 (33%), Positives = 245/468 (52%), Gaps = 14/468 (2%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V + LK ++G + SW V + PT + WI+ +++L+ Sbjct: 27 VWNKVCTVLKRELGDAAFGSWIAPAVLREGPSGDVVVVTPTGIARDWIRRSAWRRVSELW 86 Query: 98 QEEHSRIQGVEILVR--SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + +++ R ++ A + I + P+++++ P + P Sbjct: 87 TANDATGRRLDLKSRLEFESVGGAGYEAKAEPIEIVLPVSSDV---PALAPTNGSKPSPV 143 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L RF F TF+ G +N A A+ +A + NP+ H G GKTHLL A Sbjct: 144 QGLQERFTFDTFVPGPANEFAHAVARRVA-----SWADGHFNPVLFHGPYGFGKTHLLNA 198 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 +A ++++ P RVVYLTAE F+ F A+ D K+ LR DLL+IDD+ F+ GK Sbjct: 199 LAWEAMRQAPTKRVVYLTAERFLSTFVRAVMDRQTAAFKEELRGADLLIIDDVHFIAGKQ 258 Query: 276 I-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q E H L +L++ ++VV ++DR P+ + +D R+RS L G+ L D +R Sbjct: 259 SSQEELFHTLTALVEDGRRVVFSSDRAPAAMTEMDARLRSHLSAGLVCGLEPADRALRIG 318 Query: 335 IL-KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 IL + A+S++ + + EVL +A T S REL+GA N L R LT E Sbjct: 319 ILERKLQALSRQHGFEPTLRAEVLNFLADRFTDSVRELEGALNTLSARAGEGVSRLTLEE 378 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 +L + G K++ I+DIQ+ ++HY + + DLLS RR R + RPRQ AM+L+K + Sbjct: 379 VQAILRPHLRAG-EKRITIDDIQKATSEHYGMKQVDLLSERRNRAIARPRQAAMWLAKQL 437 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T RS P+IGRRFG RDHTTVLHAVR++E + D L +++E + R + Sbjct: 438 TTRSLPDIGRRFGGRDHTTVLHAVRRIEALRADDPVLSQDLETITRKL 485 >gi|269793359|ref|YP_003312814.1| chromosomal replication initiator protein DnaA [Sanguibacter keddieii DSM 10542] gi|269095544|gb|ACZ19980.1| chromosomal replication initiator protein DnaA [Sanguibacter keddieii DSM 10542] Length = 490 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 132/493 (26%), Positives = 229/493 (46%), Gaps = 33/493 (6%) Query: 32 EVNCESIFTIVSSRLKN--QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + N I+ + L+ + P ++ + K + V ++V + + +++ R Sbjct: 5 DDNISEIWKQAIAELEASPDITPRQL-AFVKLAKPLGLFDGTVIIAVANDHTRDFLETRV 63 Query: 90 LETITKLFQEEHSRIQGVEILVRSV------------------ALPSVEKTASSPSITKL 131 + + R I V A + P+ + Sbjct: 64 RAEVVQALSNALGRDARFAITVDPELGFDEESSSTTSSPSTTDAPAPAPERQGPPAHADI 123 Query: 132 SPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 + I+ + + V + L+ +++F TF+ GSSNR A V Sbjct: 124 AEISRRRASMSSGSAGSGSTSVEPALLNPKYLFETFVIGSSNRF-----AHAAAVAVAEA 178 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLFI+ GLGKTHLL AI + + P +RV Y+ +E F F ++IRD A Sbjct: 179 PAKAYNPLFIYGDSGLGKTHLLHAIGHYAYNLYPGVRVKYVNSEEFTNDFINSIRDEKAG 238 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + R +D LLIDD+QFLQGK EF H N+L ++ KQVV +D PP +L + Sbjct: 239 AFQRRYREVDFLLIDDIQFLQGKEQTMEEFFHTFNTLHNANKQVVITSDLPPKQLNGFED 298 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+RSR + G+ + D E R +IL+ + +L ++VL ++A ++++ RE Sbjct: 299 RLRSRFEWGLITDVQPPDLETRIAILRK-----KASGERLAAPDDVLEYIASKISSNIRE 353 Query: 371 LDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 L+GA ++ + + +A+ +L L+ + ++ + A ++ ++ +DL Sbjct: 354 LEGALIRVTAFANLNRQQVDLALAEIVLKDLITDDDASQITAGSVIAQTAAYFGLTIDDL 413 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 + R R +V RQ+AMYL + +T S P+IG++FG RDHTTV+HA RK+ + + + Sbjct: 414 CGSSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFGGRDHTTVMHANRKITEQMAERRST 473 Query: 490 KKEVELLKRLISE 502 +V L I + Sbjct: 474 FNQVTELTSRIKQ 486 >gi|325297173|ref|YP_004257090.1| Chromosomal replication initiator protein dnaA [Bacteroides salanitronis DSM 18170] gi|324316726|gb|ADY34617.1| Chromosomal replication initiator protein dnaA [Bacteroides salanitronis DSM 18170] Length = 469 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 122/469 (26%), Positives = 229/469 (48%), Gaps = 14/469 (2%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ + +K+ V + +WF+ + + + VP+ F +++ +Y++ + Sbjct: 10 LWKRCLAFIKDNVNTTAFTTWFEPIVPIKYEGKALTIGVPSPFFYEYLEEKYVDLLRTAL 69 Query: 98 QEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 +E I+ + +E + S+ L + + Sbjct: 70 YKEIGEGTELMYSIVTDNTNHIDIEMKGTERSVALPEAKPVYNGNKAPTLLQAPVVQDLD 129 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ + F FI+G+SN +LT A+++A+ + NPLF++ G+GKTHL+ A Sbjct: 130 PHLNPNYNFENFIKGTSNEFSLTVAETVAQNPAR-----TFNPLFLYGPSGVGKTHLINA 184 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-K 274 I + P RV+Y++A F ++ +IR N + + ID+L+IDD+Q G Sbjct: 185 IGTRIKELYPEKRVLYISAHLFQVQYTDSIRTNHFNDFITFYQQIDVLIIDDIQEFAGVT 244 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L D ++R + Sbjct: 245 KTQNTFFHIFNHLHQNGKQLILTSDRAPVMLQGIEDRLLTRFKWGLIAELERPDIDLRKN 304 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEIA 393 IL++++ LNI + V+ ++A V S REL+G N L+ + ++A Sbjct: 305 ILRSKIRRD-----GLNIPDAVINYIAENVNESVRELEGIVNSLLVYSIQLKREINLDLA 359 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++ V E K + + DI V HY + + + + R R VV+ RQ+AMYL+K T Sbjct: 360 QHIVQKAVRCSEIKPLTVNDIIEKVCSHYQLDVSVIHTKTRKREVVQVRQIAMYLAKKHT 419 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S +IG+ G++DH TVLHA + V+ +E D ++E+E ++ + + Sbjct: 420 DVSSGKIGQLIGNKDHATVLHACKIVKDQVEVDKAFRQELEKIEASLHQ 468 >gi|269977741|ref|ZP_06184701.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris 28-1] gi|269934045|gb|EEZ90619.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris 28-1] Length = 516 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 138/483 (28%), Positives = 232/483 (48%), Gaps = 51/483 (10%) Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS 118 ++ K + + L+VP +K I +Y + F + + ++ L Sbjct: 37 LRQSKALAHNEDAAVLAVPGTMVKGIIDAKYTPDLKAAFSKILGKTINNLVITVDEGLVK 96 Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVF------------------------ 154 + +A++P T + T+ SP + + +P Sbjct: 97 -QNSATTPGATPKNIGITSPLTSPNGMAPRENNPNLENPNPNPSLTTPNTTPTGNLANPA 155 Query: 155 --------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + L+ + F +F+ GSSN AA+S+ + Y NPLF Sbjct: 156 TIPAPIPASMQIDRNTGLNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAY-----NPLF 210 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ GLGKTHLL AI N +++ P +V Y+++E F F +AI L+ R + Sbjct: 211 IYGGSGLGKTHLLHAIGNYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREV 270 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QFLQGK EF H N+L + KQVV +D PP EL+S + RI+SRL+ G Sbjct: 271 DFLLIDDIQFLQGKEQTLEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWG 330 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + + + E R +IL+ + A + ++ VL ++A ++++ REL+GA ++ Sbjct: 331 LLTDIQPPNLETRIAILRRKSAQENLQ----GYDDAVLEYIASNISSNIRELEGALLRVT 386 Query: 380 FRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + ++ + A E+L + T+ + + I A+++ + ++++S R RT Sbjct: 387 AYAALSGGGSVSLDTAKEILRDFITGRNTRDITPQMIIEQTAQYFGLEVDEIMSTDRSRT 446 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV RQVAMYL + +T S P++G FG RDHTTV+HAV+K+EK + D + + + Sbjct: 447 VVNSRQVAMYLCRELTELSLPKVGEAFGGRDHTTVMHAVKKIEKTINEDSQTYQSITEIT 506 Query: 498 RLI 500 I Sbjct: 507 NQI 509 >gi|295691863|ref|YP_003600473.1| chromosomal replication initiator protein dnaa [Lactobacillus crispatus ST1] gi|295029969|emb|CBL49448.1| Chromosomal replication initiator protein dnaA [Lactobacillus crispatus ST1] Length = 455 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 236/471 (50%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + ++ + Y +WF+ K S + + V K + + Sbjct: 3 DINKFWEHFNDEMRARFNEVAYNAWFKNTKPISYNGKTHELKILVQNPVSKGYWEKNLSS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + +EIL E + I +P + + P + K+ Sbjct: 63 QLIQSAYGYA----DIEIL---PVFKISEDADITERIVTPAPKHEAQVQQPNLPEKEFTK 115 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 116 DL---KLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QA+ + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAVGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 288 TRIAILRR-----KAETEGLTIDDGTLNYIASQVDTNIRELEGALVKVQAYATIEKADID 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS Sbjct: 343 VNLAREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++ D +K V LK+++ Sbjct: 403 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKLDSDIKTAVFDLKQIL 453 >gi|227877540|ref|ZP_03995601.1| DNA-directed DNA replication initiator protein [Lactobacillus crispatus JV-V01] gi|256843831|ref|ZP_05549318.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 125-2-CHN] gi|256849614|ref|ZP_05555046.1| chromosomal replication initiator protein dnaA [Lactobacillus crispatus MV-1A-US] gi|262046282|ref|ZP_06019245.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus MV-3A-US] gi|227862863|gb|EEJ70321.1| DNA-directed DNA replication initiator protein [Lactobacillus crispatus JV-V01] gi|256613736|gb|EEU18938.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 125-2-CHN] gi|256713730|gb|EEU28719.1| chromosomal replication initiator protein dnaA [Lactobacillus crispatus MV-1A-US] gi|260573612|gb|EEX30169.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus MV-3A-US] Length = 455 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 235/471 (49%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + ++ + Y +WF+ K S + + V K + + Sbjct: 3 DINKFWEHFNDEMRARFNEVAYNAWFKNTKPISYNGKTHELKILVQNPVSKGYWEKNLSS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + +EIL E + I +P + P + K+ Sbjct: 63 QLIQSAYGYA----DIEIL---PVFKISEDADITERIVTPAPKRDAQVQQPNLPEKEFTK 115 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 116 DL---KLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QA+ + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAVGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E L I++ L ++A V T+ REL+GA ++ + + Sbjct: 288 TRIAILRR-----KAETEGLTIDDGTLNYIASQVDTNIRELEGALVKVQAYATIEKADID 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS Sbjct: 343 VNLAREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++ D +K V LK+++ Sbjct: 403 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKLDSDIKTAVFDLKQIL 453 >gi|88854499|ref|ZP_01129166.1| chromosomal replication initiator protein [marine actinobacterium PHSC20C1] gi|88816307|gb|EAR26162.1| chromosomal replication initiator protein [marine actinobacterium PHSC20C1] Length = 471 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 133/469 (28%), Positives = 226/469 (48%), Gaps = 19/469 (4%) Query: 38 IFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ V + L ++ P + + ++ V+ ++L VP + ++ R + + Sbjct: 11 LWQTVLAHLDGDERITPQL-QGFVSLVEPKGVMAGTLYLEVPNELTRGMLEQRLRQPLLD 69 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 +V P +++ A S I + I +P +Q+ Sbjct: 70 AIGSLSGEHGINNFA--TVVNPDIQQDALSQEIPRAE--QPYIEPTPPTPIEQSPPRRSD 125 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F F+ G SNR A V NPLFI+ GLGKTHLL A Sbjct: 126 SRLNPKYSFDNFVIGGSNRF-----AHAAAVAVAEAPAKAYNPLFIYGGSGLGKTHLLHA 180 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I + + P +RV Y+++E F F ++I +N A + R ID+LLIDD+QFLQGK Sbjct: 181 IGHYAESLYPGIRVRYVSSEEFTNDFINSIANNRASVFQSRYREIDILLIDDIQFLQGKD 240 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q F H N+L D KQVV +D PP L + R+RSR + G+ + D E R + Sbjct: 241 STQEAFFHTFNTLHDHNKQVVITSDLPPKHLTGFEDRMRSRFEWGLITDVQAPDLETRIA 300 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL+ + + K+ + ++L +A V+++ REL+G ++ S + + Sbjct: 301 ILRK-----KAQSEKMQVGNDILEFMASKVSSNIRELEGTLIRVTAFASLNRTEVDMALV 355 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 +L L+ E + DI A ++ ++ +DL + R + V RQ+AMYL + MT Sbjct: 356 QTVLKDLITLDEDNVIAPVDIINHTADYFKLTVDDLYGSSRSQAVATARQIAMYLCREMT 415 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S P+IG+ FG+RDHTTV++A +K+ ++++ ++ +V L I + Sbjct: 416 NLSLPKIGQLFGNRDHTTVMYANKKITELMKERRSIYNQVTELTSRIKQ 464 >gi|289422504|ref|ZP_06424347.1| chromosomal replication initiator protein DnaA [Peptostreptococcus anaerobius 653-L] gi|289157076|gb|EFD05698.1| chromosomal replication initiator protein DnaA [Peptostreptococcus anaerobius 653-L] Length = 460 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 125/473 (26%), Positives = 247/473 (52%), Gaps = 18/473 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWF--QRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ ++ +LK + + + +F + + ++ N+ +L +K + + + Sbjct: 1 MDANKLWISTKQKLKGEFPKNHFDLYFEDKNVVPVDIIDNVFYLMGEKR-VKHFFEVQQK 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + F I + +L + + S + K ++T+ K + L Sbjct: 60 DKLLETFSLLAVNINDIVVLTNEEDANRI-RLNSINNKEKSEDLDTDKDKGILELA---- 114 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + S L+ ++ F TF+ G +N +AL A+ S+A NPL+++ VGLGKT Sbjct: 115 NTLANSNLNPKYTFDTFVSGPNNNIALAASLSMA---GLNNNLKGKNPLYLYGGVGLGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + I++ P+ +V+Y+T+E F ++++N + R++D+L++DD+QF Sbjct: 172 HLMQAIGHEIIRKDPSKKVLYVTSETFTNDLIMSLKNNTPETFRQKYRSVDVLMVDDVQF 231 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q E H N L K+++ +D+ P ++ L+ R+ SR G + ++ Sbjct: 232 FSGKNSTQEELFHTFNVLQGQNKKIIFTSDKYPKDISGLEDRLTSRFGSGAVFDIQPPEF 291 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + +D ++++ +++ ++A V ++ REL+GA N + F S + Sbjct: 292 ETRVAILQK-----KAQDENMSVDMDIIYYIAENVKSNIRELEGALNTVSFYASIAGRKI 346 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + A E L + + + TK+ I I+ VA YN++ +L S +R + + PRQVAMYL Sbjct: 347 DLDTAREALKNQIISYNTKETNILRIKETVADAYNVTVEELDSKKRSKNIAFPRQVAMYL 406 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ + +S P+IG FG RDHTTV+HA++++E +E D + +E + ++ Sbjct: 407 ARNLLDKSLPKIGEEFGGRDHTTVMHAIKRIEDEIEKDDMTRMRIEKITSDLN 459 >gi|327467738|gb|EGF13232.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK330] Length = 450 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 141/471 (29%), Positives = 234/471 (49%), Gaps = 30/471 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAIIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 G EI +A + + ++ K + + IS + L P Sbjct: 65 A---------GFEIFNDQIAGKYIFEEETNIDTPKSAVTSPQISTVQLSL------PPID 109 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 110 TGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 165 IGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKK 224 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 225 VSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRI 284 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + E+ + L ++A ++ R+L+GA N L+ R +T + Sbjct: 285 AILRN-----KIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITID 339 Query: 392 IADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL++ Sbjct: 340 IAAEAIRARKQDSNQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLTR 399 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IGR FG +DHTTV+HA K++ M+E+D L+ E+E +K I Sbjct: 400 ELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESDDNLRLEIESIKNKIK 450 >gi|227876540|ref|ZP_03994651.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35243] gi|306817501|ref|ZP_07451245.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35239] gi|227842854|gb|EEJ53052.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35243] gi|304649725|gb|EFM47006.1| chromosomal replication initiator protein DnaA [Mobiluncus mulieris ATCC 35239] Length = 533 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 138/483 (28%), Positives = 232/483 (48%), Gaps = 51/483 (10%) Query: 59 FQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS 118 ++ K + + L+VP +K I +Y + F + + ++ L Sbjct: 54 LRQSKALAHNEDAAVLAVPGTMVKGIIDAKYTPDLKAAFSKILGKTINNLVITVDEGLVK 113 Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVF------------------------ 154 + +A++P T + T+ SP + + +P Sbjct: 114 -QNSATTPGATPKNIGITSPLTSPNGMAPRENNPNLENPNPNPSLTTPNTTPTGNLANPA 172 Query: 155 --------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + L+ + F +F+ GSSN AA+S+ + Y NPLF Sbjct: 173 TIPAPIPASMQIDRNTGLNPMYTFESFVIGSSNSFTAAAAESVVVSPAQAY-----NPLF 227 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ GLGKTHLL AI N +++ P +V Y+++E F F +AI L+ R + Sbjct: 228 IYGGSGLGKTHLLHAIGNYALELYPQAKVRYVSSEEFTNDFINAIATQTFPELQAKYREV 287 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QFLQGK EF H N+L + KQVV +D PP EL+S + RI+SRL+ G Sbjct: 288 DFLLIDDIQFLQGKEQTLEEFFHTFNTLHTARKQVVITSDVPPKELKSFEERIKSRLEWG 347 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + + + E R +IL+ + A + ++ VL ++A ++++ REL+GA ++ Sbjct: 348 LLTDIQPPNLETRIAILRRKSAQENLQ----GYDDAVLEYIASNISSNIRELEGALLRVT 403 Query: 380 FRHSF--APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + ++ + A E+L + T+ + + I A+++ + ++++S R RT Sbjct: 404 AYAALSGGGSVSLDTAKEILRDFITGRNTRDITPQMIIEQTAQYFGLEVDEIMSTDRSRT 463 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 VV RQVAMYL + +T S P++G FG RDHTTV+HAV+K+EK + D + + + Sbjct: 464 VVNSRQVAMYLCRELTELSLPKVGEAFGGRDHTTVMHAVKKIEKTINEDSQTYQSITEIT 523 Query: 498 RLI 500 I Sbjct: 524 NQI 526 >gi|167764848|ref|ZP_02436969.1| hypothetical protein BACSTE_03240 [Bacteroides stercoris ATCC 43183] gi|167697517|gb|EDS14096.1| hypothetical protein BACSTE_03240 [Bacteroides stercoris ATCC 43183] Length = 463 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 125/468 (26%), Positives = 235/468 (50%), Gaps = 17/468 (3%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ +++ V Y +WF + + + VP+ F ++++++++ + K Sbjct: 9 LWNRCLEIIRDNVPEQTYKTWFLPIVPLKYEDKTLVVQVPSQFFYEFLEDKFVDLLRKTL 68 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITK-LSPINTNISKSPIILGKQTISPVFGS 156 + + V EKT + S + + P I K+ Q P Sbjct: 69 YKVIGEGTKLMYNVMVDKSSRPEKTVNYESTHRTIMPQKQTIDKA----IPQIPVPDLDP 124 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ + F TFIEG SN+++ + A+++A + NPLF++ + G+GKTHL AI Sbjct: 125 HLNPEYNFDTFIEGYSNKLSRSVAEAVALNPAK----TIFNPLFLYGASGVGKTHLANAI 180 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KL 275 + P RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q G Sbjct: 181 GTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEFAGVTK 240 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E+R +I Sbjct: 241 TQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELEKPTVELRKNI 300 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 L+N + L EV+ ++A V S R+L+G ++ + + + E+A Sbjct: 301 LRN-----KIHRDGLQFPPEVIDYIAENVGNSVRDLEGIVISIMAHSTIYNKEIDLELAQ 355 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++ +VN E+K + I+DI V KH+ + + + R R VV+ RQ+AMYL+K T Sbjct: 356 RIVRKVVN-CESKAITIDDIITTVCKHFGLENAAIHTKSRKREVVQARQIAMYLAKKHTD 414 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S +IG G++DH TVLHA + ++++ E D + + E+E ++ + + Sbjct: 415 FSTAKIGTLIGNKDHATVLHACKTIKQLKEVDKSFRAEIEEIQTALKK 462 >gi|152991598|ref|YP_001357319.1| chromosomal replication initiation protein [Sulfurovum sp. NBC37-1] gi|151423459|dbj|BAF70962.1| chromosome replication initiator protein DnaA [Sulfurovum sp. NBC37-1] Length = 442 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 139/469 (29%), Positives = 230/469 (49%), Gaps = 38/469 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +I V LK ++ Y + ++L + + NIV+ + P + WIK +Y + + Sbjct: 2 NIGQKVLFELKKEISETEYERYIKKLVYDTRRSRSNIVYFNAPNMLVAKWIKTKYSDKLA 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 LF+ ++ +EI V T + P++ Sbjct: 62 HLFELQNEVKPEIEITVGK---------------------QTEKTSKPVVKQSNEKQHSK 100 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ F +FI G SN+ A T A+S+AE Y NPLF++ VGLGKTHLLQ Sbjct: 101 STYLNPSLTFESFIVGPSNQFAYTTAKSVAEKPGQIY-----NPLFLYGGVGLGKTHLLQ 155 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N I V+Y T E FM F S +R ++ R DLLLIDD+QFL K Sbjct: 156 AIGNYHIAL--GKTVIYTTLEQFMNSFTSHLRSQTMDRFREKFRECDLLLIDDIQFLSRK 213 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N L ++ KQ+V +DR P+++ L R+RSR + G+ + E + Sbjct: 214 EQTQEEFFHTFNELYNTNKQIVITSDRQPNKIAGLVDRLRSRFEWGLMADIQPPGLETKI 273 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEI 392 +I++ + + + +N E++ +A + + RE++G +L S +T + Sbjct: 274 AIIQKKCELD-----GIRLNHEIINFIATNMGDNIREIEGTIIKLNALSSMLNQDITLDF 328 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + + + + I+DI ++V+K NI +D+ S +R + VV R+ A+YL++ + Sbjct: 329 AQNAIKDQLKEK-KENISIDDIVKIVSKELNIKPSDIKSKKRTKNVVSARRTAIYLARNL 387 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TP S P+I FG +DHT + HA++K+ +++E D K +E L I+ Sbjct: 388 TPNSMPQIALYFGMKDHTAISHAMKKINEIIENDENFKVLLEELSNKIN 436 >gi|171778195|ref|ZP_02919424.1| hypothetical protein STRINF_00263 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283019|gb|EDT48443.1| hypothetical protein STRINF_00263 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 452 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 140/477 (29%), Positives = 238/477 (49%), Gaps = 31/477 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V K+Q+ Y + + + N + YL Sbjct: 1 MTENEQIFWNRVLELAKSQLKQATYEFFVLDARLIQIEQNTATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF +++ + + V + + S+ + ++ Sbjct: 47 DPMKELFWDKNLKPIILTAGFEVYNAEIVVNYVFEEDLANKQAVEEATSQV-LQTPQKNY 105 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P S L++++ F F++G NR A +A+ ++A+ Y NPLFI GLGKT Sbjct: 106 LPQVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTY-----NPLFIWGGPGLGKT 160 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI NA ++ P RV Y+TAE F+ F IR + LK+ RN+D+LLIDD+Q Sbjct: 161 HLLNAIGNAVLQNNPKARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLIDDIQS 220 Query: 271 LQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L K Q EF + N+L D+ KQ+V +DR P L++L+ R+ +R + G+++ + Sbjct: 221 LAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTINITPP 280 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + S + Sbjct: 281 DFETRVAILTN-----KTQEYDFVFPQDTIEYLAGQFDSNVRDLEGALKDISLVASIKKV 335 Query: 388 --LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T +IA E + G + IE+IQ V K Y ++ ++ + +R + +V RQV Sbjct: 336 QTITVDIAAEAIRARKQDGPKMTVIPIEEIQSQVGKFYGVTVKEIKATKRTQDIVLARQV 395 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E+E +K I Sbjct: 396 AMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIETIKNKIK 452 >gi|167752111|ref|ZP_02424238.1| hypothetical protein ALIPUT_00353 [Alistipes putredinis DSM 17216] gi|167660352|gb|EDS04482.1| hypothetical protein ALIPUT_00353 [Alistipes putredinis DSM 17216] Length = 469 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 124/467 (26%), Positives = 237/467 (50%), Gaps = 16/467 (3%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++K++ + + WF+ + + L VP I+ Y+ + + Sbjct: 12 WQTCLDQIKSRTTEEEFVKWFKPIVPLEFDGKTLRLCVPNMSYVYQIEKHYIPFLRPIIS 71 Query: 99 EEHSRIQGVEILV---RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + + V + ++P ++ ++ + NT K+P ++ V Sbjct: 72 QLYGQEIRLHYAVPKNDAQSVPVSKEADTTAISQFSTQTNTANIKNPFVIPGLK-KIVID 130 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ + F+TFIEG NR+A +A ++A H NPL+I+ + GLGKTH++Q+ Sbjct: 131 PQLNPNYTFATFIEGECNRLARSAGMAVAVDPGH----TPFNPLYIYGNSGLGKTHIVQS 186 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + +R P L+V+Y++ F +F +A ++ + + ID+L+IDD+Q L GK Sbjct: 187 IGHEVRQRHPELQVLYVSMNKFQAQFQTAYKNGEIPDFIHFYQMIDVLIIDDIQELTGKT 246 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q+ F ++ N L + KQ++ +D+PP EL+ ++ R+ +R + G+S L DY+ + Sbjct: 247 GTQNAFFNIFNHLQLAGKQLILTSDKPPVELKDIEQRLLTRFKWGLSTQLNTPDYDTKVK 306 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 I++ + + L + +E++ ++A ++ + RE++GA + LV + ++ + Sbjct: 307 IIRI-----KAQKLGLQLTDEIVRYLADNISANVREIEGALSALVANTVYMGKKVSLSLV 361 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E+L V K++ IE I +V +I L S R R V + RQ+AMYL+K T Sbjct: 362 KEILKVYVRV-CQKEITIEHIIEVVCDFLHIDIQRLNSPERTREVAQARQIAMYLAKQHT 420 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IG G R+H TVLH+ + V +ETD ++++E L++L+ Sbjct: 421 KSPLIAIGSAIGGRNHATVLHSCKAVSNQIETDKAFQRQMEELEKLV 467 >gi|306834600|ref|ZP_07467712.1| DNA-directed DNA replication initiator protein [Streptococcus bovis ATCC 700338] gi|304423236|gb|EFM26390.1| DNA-directed DNA replication initiator protein [Streptococcus bovis ATCC 700338] Length = 451 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 141/477 (29%), Positives = 240/477 (50%), Gaps = 32/477 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + ++ V K+Q+ Y + + + N + YL Sbjct: 1 MTENEQIFWSRVLELAKSQLKQATYEFFVLDARLIQIEQNTATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF +++ + + V + + I T P ++ Sbjct: 47 DPMKELFWDKNLKPIILTAGFEVYNAEIVVNYVFEEDLANQTEIMTTSQAVPTT--QKNT 104 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P+ S L++++ F F++G NR A +A+ ++A+ Y NPLFI GLGKT Sbjct: 105 LPLVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTY-----NPLFIWGGPGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI NA ++ PN RV Y+TAE F+ F IR + LK+ RN+D+LLIDD+Q Sbjct: 160 HLLNAIGNAVLQNNPNARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLIDDIQS 219 Query: 271 LQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L K Q EF + N+L D+ KQ+V +DR P L++L+ R+ +R + G+++ + Sbjct: 220 LAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTINITPP 279 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + S I Sbjct: 280 DFETRVAILTN-----KTQEYNYIFPQDTIEYLAGQFDSNVRDLEGALKDISLVASIKKI 334 Query: 388 --LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T ++A E + + I++IQ V K Y ++ ++ + +R + +V RQV Sbjct: 335 ETITVDVAAEAIRARKQDDPKMTVIPIDEIQSQVGKFYGVTVKEIKATKRTQDIVLARQV 394 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E+E +K I Sbjct: 395 AMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIETIKNKIK 451 >gi|293374955|ref|ZP_06621251.1| chromosomal replication initiator protein DnaA [Turicibacter sanguinis PC909] gi|325844340|ref|ZP_08168116.1| chromosomal replication initiator protein DnaA [Turicibacter sp. HGF1] gi|292646432|gb|EFF64446.1| chromosomal replication initiator protein DnaA [Turicibacter sanguinis PC909] gi|325489207|gb|EGC91589.1| chromosomal replication initiator protein DnaA [Turicibacter sp. HGF1] Length = 448 Score = 412 bits (1058), Expect = e-112, Method: Composition-based stats. Identities = 147/471 (31%), Positives = 241/471 (51%), Gaps = 30/471 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQ-RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + I+ +RLK+ + + +F K + V +N +++ V N + + YL+ + Sbjct: 4 YQRIWDDAINRLKSNISQQSFDMFFSTPKKVYKVKNNKMYVIVQNNHEQFMLDKFYLKEL 63 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ E + G V+ + V+ + +TK P + Sbjct: 64 VEMIAE----VSGFNYDVKFITNDYVKNDQQAFDLTKPDP---------------NLPKY 104 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L++ + F F+ G SNR+A A +AE NPL+I VGLGKTHL+ Sbjct: 105 YRGNLNTTYTFDRFVAGKSNRLAYMIALQVAERPGE-----VANPLYIFGGVGLGKTHLM 159 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAI N + P+ R++Y T+E F+ + A DN K+ RNID+LLIDD+QFL Sbjct: 160 QAIGNFILDDNPSSRILYCTSEKFIDDYRHATLDNNFEAFKEKYRNIDVLLIDDIQFLSK 219 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + N L ++ KQ+V +DRP S+L+ + R+ SR + G+ + + D + R Sbjct: 220 KEQTQTEFFNTFNELYNNNKQIVITSDRPASDLKDIMDRLTSRFEWGLQADIQIPDTQTR 279 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 I+K +LA + EEVL +A ++ R L+GA +L+F + T E Sbjct: 280 IEIMKKKLAGENINLDEF--PEEVLEFIASKFNSNVRTLEGALKRLIFYATINNSDFTIE 337 Query: 392 IADELLSHLVNT-GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A+E L L + K+ + +I + V +Y++S D+LS +R + + RQVAM+L++ Sbjct: 338 LANEALRDLFKAEQKNSKIDVNNIIKEVGAYYDVSVADILSKKRKKNIAYARQVAMFLTR 397 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T SFP+IG F RDHTT++H K+EK L+ LKK + LK+ +S Sbjct: 398 ELTGSSFPKIGEAFSGRDHTTIMHGCEKIEKELKESAELKKAINDLKQALS 448 >gi|293380891|ref|ZP_06626927.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 214-1] gi|290922564|gb|EFD99530.1| chromosomal replication initiator protein DnaA [Lactobacillus crispatus 214-1] Length = 455 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 138/471 (29%), Positives = 234/471 (49%), Gaps = 24/471 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYLE 91 + + + ++ + Y +WF+ K S + + V K + + Sbjct: 3 DINKFWEHFNDEMRARFNEVAYNAWFKNTKPISYNGKTHELKILVQNPVSKGYWEKNLSS 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + +EIL E + I +P + P + K+ Sbjct: 63 QLIQSAYGYA----DIEIL---PVFKISEDADITERIVTPAPKREAQVQQPNLPEKEFTK 115 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L+ ++ F F++G N++A AA ++A+ Y NPLFI VGLGKTH Sbjct: 116 DL---KLNEKYTFDNFVQGEGNKLAAGAALAVADSPGSFY-----NPLFIFGGVGLGKTH 167 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QA+ + + +PN +VVY+ +E F+ F ++I++ ++ R DLLL+DD+QF Sbjct: 168 LMQAVGHQMLAERPNAKVVYIQSETFVNDFINSIKNKTQDKFREKYRTCDLLLVDDIQFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E Sbjct: 228 AKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPTEIPDLSERLVSRFTWGLQVEITPPDLE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ + E I++ L ++A V T+ REL+GA ++ + + Sbjct: 288 TRIAILRR-----KAETEGWTIDDGTLNYIASQVDTNIRELEGALVKVQAYATIEKADID 342 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E L L + + ++I IQ +VA ++ S +L +RVR +V PRQ+AMYLS Sbjct: 343 VNLAREALVDLKLVQKNRGLQISKIQEVVANYFQTSTAELKGKKRVRQIVVPRQIAMYLS 402 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + +T S P+IG+ FG +DHTTV+HA K++K ++ D +K V LK+++ Sbjct: 403 RELTDASLPKIGQEFGGKDHTTVMHAYDKIDKQMKLDSDIKTAVFDLKQIL 453 >gi|300702375|ref|YP_003743975.1| chromosomal replication initiator protein DnaA [Ralstonia solanacearum CFBP2957] gi|299070036|emb|CBJ41321.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum CFBP2957] Length = 525 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 128/393 (32%), Positives = 207/393 (52%), Gaps = 13/393 (3%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 + + + E +A S + +P +S S + S L+ F + G Sbjct: 143 IDVPVMDAAEASAQSYRVPASAPSAAMMSLSAPPAAPVDDTVHERSRLNPILTFDNLVTG 202 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 +N++A AA +A Y NPL+++ VGLGKTHL+ AI N + P R+ Sbjct: 203 KANQLARAAAVQVANNPGKSY-----NPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIR 257 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 Y+ AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ Sbjct: 258 YIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIA 317 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + Sbjct: 318 NRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MKKAQAEN 372 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 + + EEV VA+ + ++ REL+GA +++ +F +T E+ E L L+ T + ++ Sbjct: 373 VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDLL-TVQNRQ 431 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RD Sbjct: 432 ISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRD 491 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHAVRK+ D L E+ +L++ + Sbjct: 492 HTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 524 >gi|254281820|ref|ZP_04956788.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR51-B] gi|219678023|gb|EED34372.1| chromosomal replication initiator protein DnaA [gamma proteobacterium NOR51-B] Length = 478 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 152/489 (31%), Positives = 257/489 (52%), Gaps = 42/489 (8%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS 102 + LK + + +W + L+ + I +S P F++ +++N+Y + IT+ F ++ Sbjct: 1 MNYLKGALPQQQFNTWIRPLEGRADEAGI-TISAPNRFIRDFVENKYGDDITRYFAQQLP 59 Query: 103 RIQG-VEILVRSVALPSVEKTASSPSITKLSPI------------------NTNISKSPI 143 G V +V A ++S + +P N++I + + Sbjct: 60 SGLGAVSFVVAERACFRSSTSSSPTAGVTDTPADEEPGGTSTTPDSDKRGFNSDIDAAAV 119 Query: 144 ILGKQTISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 G P L S + F +F+EG SN++AL AAQ +AE + Y Sbjct: 120 DPGNVIALPRATPAAALAANQRNLVSGYTFDSFVEGKSNQLALAAAQQVAENPGNSY--- 176 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLF++ VGLGKTHL+ A+ NA R+P+ ++VYL +E F+ A++ N + K Sbjct: 177 --NPLFLYGGVGLGKTHLMHAVGNALRARKPDAKIVYLHSERFVADMVKALQLNAINDFK 234 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R +D LLIDD+QF K Q EF H N+LL+ +Q++ DR P E++ L+ R++ Sbjct: 235 RYYRTVDALLIDDIQFFANKDRSQEEFFHTFNALLEGGQQMILTCDRYPKEIDGLEERLK 294 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G++V + + E R +IL + + + +++ E +A+ + ++ REL+G Sbjct: 295 SRFGWGLTVAVEPPELETRVAIL-----MKKAAEADIDLVPEAAFFIAQRIRSNVRELEG 349 Query: 374 AFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A +++ +F E+ + L L+ +++ +++I+R VA++Y I DLLS Sbjct: 350 ALKRVIASANFTGRPYDIELIKDSLKDLLALQ-DRQISLDNIKRTVAEYYKIKLADLLSR 408 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+ + ET ++++ Sbjct: 409 RRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIRDLRETTSDIRED 468 Query: 493 VELLKRLIS 501 + L R ++ Sbjct: 469 FKNLMRSLT 477 >gi|293191011|ref|ZP_06609055.1| DnaA [Actinomyces odontolyticus F0309] gi|292820698|gb|EFF79664.1| DnaA [Actinomyces odontolyticus F0309] Length = 479 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 138/467 (29%), Positives = 228/467 (48%), Gaps = 24/467 (5%) Query: 48 NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGV 107 +++GP S + + + + L+VP +F K WI+++ +T R + Sbjct: 20 DELGPVA-TSMLRSARPLGDIEGTILLAVPNDFTKQWIEDKAQSKLTTALSVHLGRTVRI 78 Query: 108 EILVRSV---ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP--LDSRF 162 I V E+ ++P+ +P ++ +P P L+ +F Sbjct: 79 AITVDPTLEVVTEEEEEEETTPAAPTDAPASSTDEDEEHHSPALVTAPTDSGPTHLNPKF 138 Query: 163 VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK 222 F TF+ G SNR A AA + +E NPLFI+ GLGKTHLLQAI + ++ Sbjct: 139 TFDTFVIGPSNRFAHAAALAASETPGTA-----FNPLFIYGDSGLGKTHLLQAIGHNALS 193 Query: 223 RQPNLRVVYLTAEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQGKL-I 276 P+L+V Y+ +E F F +AIR N N R +D+LLIDD+QF+ K Sbjct: 194 MMPHLKVRYVNSEEFTNEFINAIRLNKTDNSQVEAFHRRYRELDILLIDDIQFIGDKEQT 253 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 F H N+L + KQ+V +D PP++L+ + R+RSR G+ V + D E R +IL Sbjct: 254 VEGFFHTFNALHSANKQIVLTSDLPPAQLKGFEDRMRSRFSSGLLVDVQPPDLETRIAIL 313 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + L + EV +VA ++++ REL+GA ++ S + + +A Sbjct: 314 HK-----KADAEGLEVTPEVFEYVASRISSNIRELEGALVRIGAWASLYQERIDLNLAQM 368 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L V+ + ++ + I A ++ ++ + S+ R VV RQ+AMYL + +T Sbjct: 369 MLKDFVSNPDDNEITVSLIMSQCAVYFGVTIEQMGSSERSHNVVEARQIAMYLCRELTDL 428 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S P+IG+ FG RDHTTV+HA +K+ K+++ V L I + Sbjct: 429 SLPKIGQAFG-RDHTTVMHANKKISKLMKEKRETFNHVSELTNRIKQ 474 >gi|327490338|gb|EGF22125.1| DNA-directed DNA replication initiator protein DnaA [Streptococcus sanguinis SK1058] Length = 450 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 234/471 (49%), Gaps = 30/471 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K V + + + + + + + I Sbjct: 5 QDFWNRILELAHAQLKQTTYDFFVAEAKLVKVEEKQAIIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 G EI +A + + ++ K + + IS + L P Sbjct: 65 A---------GFEIFNDQIAGKYIFEEETNIDTPKSAVTSPQISTVQLSL------PPID 109 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 110 TGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ P+ RV Y+ AE F+ F +R + K R++DLLLIDD+Q L GK Sbjct: 165 IGNQILENIPDARVKYIPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQSLGGKK 224 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 225 VSTQEEFFNTFNALHGENKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRI 284 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + E+ + L ++A ++ R+L+GA N L+ R +T + Sbjct: 285 AILRN-----KIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLIARVRHLKEITID 339 Query: 392 IADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 IA E + ++ + + I+ IQ V K Y +S ++ +RRV+ +V RQVAMYL++ Sbjct: 340 IAAEAIRARKQDSNQVTVIPIDKIQSEVGKFYGVSVKEMKGSRRVQNIVLARQVAMYLTR 399 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IGR FG +DHTTV+HA K++ M+E++ L+ E+E +K I Sbjct: 400 ELTDNSLPKIGREFGGKDHTTVIHAHGKIKTMIESNDNLRLEIESIKNKIK 450 >gi|296533903|ref|ZP_06896430.1| DNA-directed DNA replication initiator protein [Roseomonas cervicalis ATCC 49957] gi|296265778|gb|EFH11876.1| DNA-directed DNA replication initiator protein [Roseomonas cervicalis ATCC 49957] Length = 365 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 151/365 (41%), Positives = 230/365 (63%), Gaps = 13/365 (3%) Query: 138 ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + + +PLD RF F +F+ G N A A+ +AE + + N Sbjct: 10 AEPASSAPRGAESRNDWAAPLDPRFTFDSFVVGKPNEFAHACARRVAEKPA----SPGFN 65 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLF++ VGLGKTHL+ +IA A V Y++AE FM+RF +A+R + K+SL Sbjct: 66 PLFLYGGVGLGKTHLMHSIAWAISFNG-QRNVAYMSAEKFMYRFIAALRSQSTMEFKESL 124 Query: 258 RNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R++D+L+IDD+QFL GK Q EF H N+L+D+ KQ+V +AD+ PS+L L+ R+R+RL Sbjct: 125 RSVDVLMIDDLQFLIGKDNTQEEFFHTFNALVDAGKQIVVSADKSPSDLSGLEDRLRTRL 184 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 G+ + YE+R SIL+ ++ + ++++ VL +A +T++ REL+GA N Sbjct: 185 GCGMVADIHATTYELRISILQ-----AKAQGAEVDVPPRVLEFLAHKITSNVRELEGALN 239 Query: 377 QLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 +L+ + F +T E A E+L ++ +++ IE+IQR VA+HYNI D+ S RR Sbjct: 240 RLIAHANLFGRPITLESAQEVLHDILR-AHDRRVTIEEIQRKVAEHYNIRLTDMSSARRA 298 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 R V RPRQVAMYL+K +T RS PEIGRRFG+RDHTTV+HAV +V +++++D T ++VEL Sbjct: 299 RNVARPRQVAMYLAKQLTSRSLPEIGRRFGNRDHTTVMHAVSRVAELMQSDSTFAEDVEL 358 Query: 496 LKRLI 500 L+R++ Sbjct: 359 LRRML 363 >gi|166365030|ref|YP_001657303.1| chromosomal replication initiation protein [Microcystis aeruginosa NIES-843] gi|189044599|sp|B0JGA6|DNAA_MICAN RecName: Full=Chromosomal replication initiator protein DnaA gi|166087403|dbj|BAG02111.1| chromosomal replication initiator protein [Microcystis aeruginosa NIES-843] Length = 444 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 136/473 (28%), Positives = 236/473 (49%), Gaps = 37/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + + ++ + RLK + + +WFQ ++ + + F+ ++ YL Sbjct: 1 MDSSAQQLWHNLLERLKLLLTRPAFETWFQTATVKEWQNDRLVIQAANPFILNHLQKNYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI ++ Q+ +++ + L ++ + +S ++LSP N Sbjct: 61 STIAEVVQDIVGYPVEIQLTAQQGDLIAIFQPHTS-LESELSPTN--------------- 104 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ FS F+ G +NR+A AA ++AE+ NPLF+ VGLGKT Sbjct: 105 ------QLNPKYNFSRFVVGPTNRMAHAAALAVAELPGR-----EFNPLFLCGGVGLGKT 153 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P RV Y++ E F +AIR + + ++ R+ D+LL+DD+QF Sbjct: 154 HLMQAIGHYRLELYPQSRVFYVSTEQFTNDLITAIRQDSMESFRNHYRHADILLVDDLQF 213 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DR P ++ SL R+ SR G+ + D Sbjct: 214 IEGKEYTQEEFFHTFNTLHEAGKQVVLASDRLPKQIPSLQDRLISRFSMGLVADIQAPDI 273 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E L + EV+ ++A T++ REL+GA + ++ I Sbjct: 274 ETRMAILQK-----KAEYENLRLPREVIEYIAVNYTSNIRELEGALIR---ATTYISISG 325 Query: 390 AEIADELLSHLVNTGETKKMR-IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++N K E I +VA+ + +S DL N R R + RQ+ MYL Sbjct: 326 LPMTVENIAPVLNPPMAKIATSPEIIMAVVAEKFQLSIADLKGNSRRREISFARQIGMYL 385 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV+++ K+ D L++ + L I+ Sbjct: 386 MRQHTDLSLPRIGEEFGGKDHTTVIYSCDKINLSQHQDRQLQEILAQLIERIN 438 >gi|322386432|ref|ZP_08060061.1| DNA-directed DNA replication initiator protein [Streptococcus cristatus ATCC 51100] gi|321269518|gb|EFX52449.1| DNA-directed DNA replication initiator protein [Streptococcus cristatus ATCC 51100] Length = 451 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 233/471 (49%), Gaps = 29/471 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + Q+ Y + K ++ +N + + + + + + + I Sbjct: 5 QEFWRRILELSAAQLKQTTYDFFVAEAKLIAIENNQATIFLDSPVKQLFWEQNLVGVILT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 G EI + V + A ++K + + + P Sbjct: 65 A---------GFEIFNDQITAKYVFEEAGHDLVSKY-----QLEEQAEKTPFRPSLPPID 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L +++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 111 TGLKAKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ P+ RV Y+ AE F+ F +R N K R++DLLLIDD+Q L GK Sbjct: 166 IGNQILENIPDARVKYIPAETFINDFLEHLRLGDMDNFKKIYRSLDLLLIDDIQSLGGKK 225 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R Sbjct: 226 VSTQEEFFNTFNALHGDNKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRI 285 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + E+ + L ++A ++ R+L+GA N L+ R +T + Sbjct: 286 AILRN-----KIENLDYIFPNDTLEYLAGQFDSNVRDLEGALNDITLIARVRNLKEITID 340 Query: 392 IADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 IA E + ++ + + IE IQ V Y +S ++ +RRV+ +V RQVAMYL++ Sbjct: 341 IAAEAIRARKQDSSQVTVIPIEKIQSEVGNFYGVSVKEMKGSRRVQNIVLARQVAMYLAR 400 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IGR FG +DHTTV+HA K++ LETD +L+ E+E +K I Sbjct: 401 ELTDNSLPKIGREFGGKDHTTVIHAHGKIKNRLETDDSLRLEIENIKNKIK 451 >gi|218128622|ref|ZP_03457426.1| hypothetical protein BACEGG_00192 [Bacteroides eggerthii DSM 20697] gi|317475576|ref|ZP_07934838.1| chromosomal replication initiator protein DnaA [Bacteroides eggerthii 1_2_48FAA] gi|217989224|gb|EEC55538.1| hypothetical protein BACEGG_00192 [Bacteroides eggerthii DSM 20697] gi|316908280|gb|EFV29972.1| chromosomal replication initiator protein DnaA [Bacteroides eggerthii 1_2_48FAA] Length = 464 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 123/473 (26%), Positives = 233/473 (49%), Gaps = 15/473 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + ++ +++ V Y +WF + + + VP+ F ++++++++ Sbjct: 3 EQDHVGLWNRCLEIIRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDKFVD 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + K + + V EKT + S + I Q Sbjct: 63 LLRKTLYKVIGEGTKLMYNVMVDKSSRPEKTVNYESTHRTIIPQKPTIDKAI---PQIPV 119 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P L+ + F TFIEG SN+++ + A+++A + NPLF++ + G+GKTH Sbjct: 120 PDLDPHLNPEYNFDTFIEGYSNKLSRSVAEAVALNPAK----TIFNPLFLYGASGVGKTH 175 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L AI + P RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q Sbjct: 176 LANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEF 235 Query: 272 QG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E Sbjct: 236 AGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELEKPTVE 295 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 +R +IL+N + L EV+ ++A V S R+L+G ++ + + + Sbjct: 296 LRKNILRN-----KIHRDGLQFPPEVIDYIAENVGNSVRDLEGIVISIMAHSTIYNKEID 350 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A ++ +VN E+K + I+DI V KH+ + + + R R VV+ RQ+AMYL+ Sbjct: 351 LELAQRIVRKVVN-CESKSITIDDIITTVCKHFGLENAAIHTKSRKREVVQARQIAMYLA 409 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K T S +IG G++DH TVLHA + ++++ E D + + E++ ++ + + Sbjct: 410 KNHTDFSTAKIGTLIGNKDHATVLHACKTIKQLKEVDKSFRAEIDEIQTALKK 462 >gi|194476496|ref|YP_002048675.1| chromosomal replication initiation protein [Paulinella chromatophora] gi|171191503|gb|ACB42465.1| chromosomal replication initiation protein [Paulinella chromatophora] Length = 472 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 135/475 (28%), Positives = 243/475 (51%), Gaps = 24/475 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + ++ V LK + + +W + S + + L P F +W+ YL +I Sbjct: 5 DKLWYDVQQILKATLTKPTFETWIRPAHCKSFENGELLLEAPNYFACSWLIKHYLPSIIG 64 Query: 96 LFQEEHSRIQGVEIL-------VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + + + + V+I + ++ LP++ KT P T +S+ + Sbjct: 65 IASKINGQQIKVQIFAENNKSAINNLTLPAI-KTTELPRSTSNKFSKDFVSRRISFPSEN 123 Query: 149 TISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 P L+ R++F+ F+ G ++R+A AA ++AE NPLFI VGL Sbjct: 124 KERLYPSLPTLNKRYLFNRFVVGPNSRMAHAAALAVAESPGR-----CFNPLFICGGVGL 178 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+QAI N +K P R+ +++ E F AI+ + ++ R D+LL+DD Sbjct: 179 GKTHLMQAIGNYRLKIDPEARIFFISTEQFTNDLIQAIKKDGMQIFRECYRKADMLLVDD 238 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF++GK Q EF H N+L ++ Q+V +DRPP+++ L R+ SR G+ + Sbjct: 239 IQFIEGKQYTQKEFFHTFNALYEADCQIVITSDRPPNQIPRLQERLVSRFSMGLIADIQP 298 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D E R +IL + E K+ ++++++ ++A + + REL+GA + + A Sbjct: 299 PDLETRIAILNK-----KAEQEKMILSKDLVQYMAGRFSANIRELEGALTRAIA---LAS 350 Query: 387 ILTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 I + + L+ +++ G K ++ + + V++ +++S +++ S+ R V + RQV Sbjct: 351 ITSLPMTATSLAPVIDPGNQKVEVTPQKLINKVSEVFDVSIDEMRSSSRKSAVTQARQVG 410 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + T S P IG FG +DHTTV++A+ +VEK L ++ L +V+ +K LI Sbjct: 411 MYLMRKGTNLSLPRIGEAFGGKDHTTVIYAIEQVEKKLISNPKLASQVQKVKDLI 465 >gi|256831256|ref|YP_003159983.1| chromosomal replication initiator protein DnaA [Jonesia denitrificans DSM 20603] gi|256684787|gb|ACV07680.1| chromosomal replication initiator protein DnaA [Jonesia denitrificans DSM 20603] Length = 476 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 134/477 (28%), Positives = 225/477 (47%), Gaps = 17/477 (3%) Query: 32 EVNCESIFTIVSSRLK-NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 E ++ + L+ + + + K L + V + + + R Sbjct: 5 EDTLTLLWESIVRDLEYREDSTPRLIALLRGTKLMGFLDATAIIGVANEGQRDFFERRGR 64 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPS--VEKTASSPSITKLSPINTNISKSPIILGKQ 148 + +++ + + + V S V A+SP +P Sbjct: 65 QELSEAISRAMGKPITIAVTVNPDLERSSVVSAPATSPHTQDSAPTPDAPRSLVDREPVV 124 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 S G L+ +++F TF+ GSSNR A V NPLFI+ GLG Sbjct: 125 PKSLDEGHRLNPKYIFETFVIGSSNRF-----AHAAAVAVAEAPAKAYNPLFIYGGSGLG 179 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N ++ P+ +V Y+ +E F F ++IRD A + R +D LLIDD+ Sbjct: 180 KTHLLHAIGNYALNLYPSAKVKYVNSEEFTNDFINSIRDEKAGAFQRRHREVDFLLIDDI 239 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQGK EF H N+L ++ KQVV +D PP +L + R+RSR + G+ + Sbjct: 240 QFLQGKEATMEEFFHTFNALHNANKQVVITSDLPPKQLAGFEDRLRSRFEWGLITDVQPP 299 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP- 386 D E R +IL+ + A + LN ++VL ++A ++++ REL+GA ++ + Sbjct: 300 DLETRIAILRKKAAGER-----LNAPDDVLEYIASRISSNIRELEGALIRVTAFANLNRQ 354 Query: 387 ILTAEIADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + ++A+ +L L+ + + ++ + A ++ ++ DL R R +V RQ+ Sbjct: 355 PVDRQLAEIVLKDLITDDDGEGAQITASSVIAQTAAYFGLTIEDLCGASRSRVLVTARQI 414 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYL + +T S P+IG +FG RDHTTV+HA RK+ + + ++ +V L I Sbjct: 415 AMYLCRELTDLSLPKIGAQFGGRDHTTVMHANRKIAEQMAERRSIYNQVTELTSRIK 471 >gi|313205512|ref|YP_004044689.1| chromosomal replication initiator protein dnaa [Riemerella anatipestifer DSM 15868] gi|312444828|gb|ADQ81183.1| chromosomal replication initiator protein DnaA [Riemerella anatipestifer DSM 15868] gi|315023384|gb|EFT36394.1| Chromosomal replication initiator protein dnaA [Riemerella anatipestifer RA-YM] gi|325335056|gb|ADZ11330.1| DnaA [Riemerella anatipestifer RA-GD] Length = 492 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 128/502 (25%), Positives = 244/502 (48%), Gaps = 40/502 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGP-----------DVYASWFQRLKFHSVLHNIVHLSVPTN 79 +E + I+ +K+ + + F R++ S+++N + + VP++ Sbjct: 1 MEQDLFIIWDRCLQFMKDNLNAMEQGDAMGKLGSSFHLLFDRVQPISLVNNNLTIGVPSD 60 Query: 80 FLKAWIKNRYLETITKLFQEEHSRIQGVEILV---RSVALPSVEKTASSPSITKLSPINT 136 F K +I+ YL ++ ++ + + V +S V++ ++ P+ Sbjct: 61 FYKEYIEENYLPLLSAALRKNIGKGVKLWYSVLDKKSQENQQVQQQTATHIKGMSMPVPK 120 Query: 137 NISKSPIILGKQTISPVF---------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 P L + +P+ S L+ F F+EG SN+ A +AA+ IA+ Sbjct: 121 PQEIMPPSLSSKIQNPLVVPGLKKISVESNLNPVHSFDNFVEGESNKFAFSAAKIIAKRP 180 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD 247 NP+FI+ VG+GKTH+ QAI P+ V YL++E F+ +F A Sbjct: 181 GE----TSFNPMFIYGGVGVGKTHIAQAIGLEIKNTYPDKVVHYLSSEKFIQQFIKAANS 236 Query: 248 NCA-----LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRP 301 N + + + +D+L++DD+QFL GK Q F H+ + L + KQ++ +D+ Sbjct: 237 NRGNANSREDFANFYKMLDVLIVDDIQFLSGKRATQDSFFHIFDYLHQNGKQIILTSDKA 296 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P+++ ++ R+ SR + G++ + DY+ R I+ + + + ++E+++ +A Sbjct: 297 PADIMDIEERVVSRFKWGLTAEIKSPDYDTRRKII-----VDKLHRDGIALSEDMIDFLA 351 Query: 362 RTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 V ++ REL G N ++ + + LT ++ E + + ++ + K + I IQ +V Sbjct: 352 GEVQSNVRELIGVINAVIAYSTIYKSDLTLDLLKETI-NKISANQKKVISIPYIQEVVCD 410 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 ++ I R LLS R R + PRQ+AMY +K T +F +IG G +DH+TV++A V+ Sbjct: 411 YFGIKREQLLSKTRKRDIALPRQLAMYFAKEFTDATFTKIGEEMGGKDHSTVMYACDTVK 470 Query: 481 KMLETDITLKKEVELLKRLISE 502 E D ++K ++ LK I + Sbjct: 471 NTAEVDKQMRKYIKELKEKIRK 492 >gi|124384274|ref|YP_001028201.1| chromosomal replication initiation protein [Burkholderia mallei NCTC 10229] gi|126449063|ref|YP_001079584.1| chromosomal replication initiation protein [Burkholderia mallei NCTC 10247] gi|254359608|ref|ZP_04975879.1| chromosomal replication initiator protein DnaA [Burkholderia mallei 2002721280] gi|166201864|sp|A3MH48|DNAA_BURM7 RecName: Full=Chromosomal replication initiator protein DnaA gi|166201865|sp|A2S8D2|DNAA_BURM9 RecName: Full=Chromosomal replication initiator protein DnaA gi|124292294|gb|ABN01563.1| chromosomal replication initiator protein DnaA [Burkholderia mallei NCTC 10229] gi|126241933|gb|ABO05026.1| chromosomal replication initiator protein DnaA [Burkholderia mallei NCTC 10247] gi|148028822|gb|EDK86754.1| chromosomal replication initiator protein DnaA [Burkholderia mallei 2002721280] Length = 533 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 163 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 222 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 223 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 277 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 278 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 337 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 338 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 392 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 393 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 451 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 452 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 511 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 512 DERGKDAQLNHELHVLEQTLK 532 >gi|255994571|ref|ZP_05427706.1| ATPase involved in DNA replication initiation [Eubacterium saphenum ATCC 49989] gi|255993284|gb|EEU03373.1| ATPase involved in DNA replication initiation [Eubacterium saphenum ATCC 49989] Length = 455 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 233/474 (49%), Gaps = 32/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + +N E ++ ++N + P Y SW + L+ + L S I+ R Sbjct: 9 MLMNIEDLWKKTKKNIENSISPTSYDSWIKNLELIGFDDSTSTLTLSTDNMISINIIEKR 68 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 L ++ +E + ++I R TK ++N I+ + Sbjct: 69 LLHSMKTSAKEVFEQDINIKIEYRENKR------------TKNKIKDSNKGDFDILFEEN 116 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L+ ++ F F+ G +NR A A SIA + Y NP F++ GLG Sbjct: 117 I--------LNPKYTFDNFVVGDNNRHAHAVALSIANSEISEY-----NPFFLYGGPGLG 163 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI +K P +V+Y+ AE F ++IR + K+ R +D+LLIDD+ Sbjct: 164 KTHLMHAIGMTIMKNFPYKKVLYVPAETFTTDLINSIRKSSQEEFKNKYRMVDVLLIDDI 223 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+QGK Q EF H NSL KQ+V ++DR P+ L LD R+RSR V+ + Sbjct: 224 QFMQGKESTQEEFFHTFNSLTRLGKQIVISSDRSPNHLNKLDERLRSRFMQNVTTDIKPA 283 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAP 386 ++E R +IL+ + I E EV+ +A + + R L+GA +L+ F Sbjct: 284 NFETRVAILQKKCEIENFEVDANL--NEVINLIAHNIDNNIRALEGALTKLISFSRLLNE 341 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T + A + L + E K + E I+ +V+ ++NIS +DL S R + PRQ+AM Sbjct: 342 KITIDYAKKNLPEIFKNRENK-ISCETIKIIVSNYFNISISDLESKNRKKEFTIPRQIAM 400 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +L + +T S P+IG FG +DH+TVLHA RK++K+ ETD +K +E +K + Sbjct: 401 FLCRELTGDSLPKIGELFGGKDHSTVLHACRKIKKLEETDNYIKISIEEIKNKL 454 >gi|227506187|ref|ZP_03936236.1| chromosomal replication initiation protein [Corynebacterium striatum ATCC 6940] gi|227197211|gb|EEI77259.1| chromosomal replication initiation protein [Corynebacterium striatum ATCC 6940] Length = 537 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 128/394 (32%), Positives = 205/394 (52%), Gaps = 15/394 (3%) Query: 113 SVALPSVEKTASSPSITKLSPI---NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 + P +T+ +P+ S + I P L+ + F F+ Sbjct: 149 NQTQPPAWQTSHAPASLDELANHYNQQQHSNARIPREAPAHDPNREESLNPKHTFENFVI 208 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 GSSNR A AA ++AE + Y NPLFI GLGKTHLL A N + P LRV Sbjct: 209 GSSNRFANGAAVAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAGNYAQLLHPGLRV 263 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLL 288 Y+++E F + +++RD+ + K RN+D+L++DD+QFL+GK Q EF H N+L Sbjct: 264 KYVSSEEFTNDYINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKESTQEEFFHTFNALH 323 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E R +IL + A E Sbjct: 324 QANKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAADGTE-- 381 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 ++ VL +A +S REL+GA ++ S ++ E+A+ L L + Sbjct: 382 ---VDRSVLELIASRFESSIRELEGALIRVSAYSSLVNEPISLEMAEIALHDLAPDSAGR 438 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ I + A+++NI L + R V RQ+AMYL + +T S P+IG +FG + Sbjct: 439 EITATAIMEVTAEYFNIDVETLRGAGKKRAVAHARQLAMYLCRELTELSLPKIGDQFGGK 498 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTV++A RK+ K + + E++ L + I Sbjct: 499 DHTTVIYADRKIRKEMTENRNTYDEIQALTQRIK 532 >gi|89898446|ref|YP_515556.1| chromosomal replication initiation protein [Chlamydophila felis Fe/C-56] gi|89331818|dbj|BAE81411.1| chromosomal replication initiator protein [Chlamydophila felis Fe/C-56] Length = 450 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 143/466 (30%), Positives = 233/466 (50%), Gaps = 27/466 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + + +K + + +W ++ + L VP F++ ++ + Y + + Sbjct: 8 STWEQFVNYVKTRCSKTAFENWISPIQIIEETQEKIRLEVPNIFVQNYLLDNYKQDLCSF 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +E +V + V+ A P K SP T S F Sbjct: 68 VPLDAQGEPALEFVVAEIKKSPVQPVA--PREQKESPAETFEG-----------SKDFEL 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L++ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ Sbjct: 115 KLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSY-----NPLFIHGGVGLGKTHLLHAV 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + NLRV +T E F+ +R +K+ R++DLLL+DD+QFLQ + Sbjct: 170 GHYVKEHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLDLLLVDDIQFLQNRQN 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + EFC+ +L++ KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +I Sbjct: 230 FEEEFCNTFETLINLNKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETRVAI 288 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 L++ + E L+I E+ ++A + + R+L+GA N+L F LT I Sbjct: 289 LQH-----KAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTESIVR 343 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L + +K+ +E I + VA + + DL N R + +V RQVAMYL+K + Sbjct: 344 DTLKELFRSPSKQKVSVESILKSVATVFQVKLQDLKGNSRSKELVLARQVAMYLAKTLIT 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG + H+TVL+A + +E+ +E D TL +++ L K I Sbjct: 404 DSLVAIGSAFG-KTHSTVLYACKTIEQKIEKDETLTRQISLCKNHI 448 >gi|312865764|ref|ZP_07725986.1| chromosomal replication initiator protein DnaA [Streptococcus downei F0415] gi|311098639|gb|EFQ56861.1| chromosomal replication initiator protein DnaA [Streptococcus downei F0415] Length = 462 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 140/478 (29%), Positives = 235/478 (49%), Gaps = 23/478 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + V ++ + + + + V ++ + + +K + Sbjct: 1 MTENETIFWNRVLELARDHLTQATFEFFVLDAQLVKVENDTAIIYI------DRMKELFW 54 Query: 91 E-TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 E + ++ + +I + V + T + + N P Q+ Sbjct: 55 EKNLQQVLITAGFEVFNKQIKPQYVFESAEIDTVLANGLDSRQAGLANAYPQPGST--QS 112 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P S L+ ++ F FI+G N+ A A+ ++A Y NPLFI GLGK Sbjct: 113 SQPALPSNLNPKYQFDNFIQGDENKWAKAASIAVANSPGTTY-----NPLFIWGGPGLGK 167 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI N ++ PN RV Y+TAE F+ F + IR LKD+ R++D+LLIDD+Q Sbjct: 168 THLLNAIGNTVLENNPNARVRYITAENFINEFVTHIRLESMEELKDNFRSLDVLLIDDIQ 227 Query: 270 FLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 L K Q EF + N+L + KQ+V +DR P L +L+ R+ +R + G++V + Sbjct: 228 SLAKKTLEGTQEEFFNTFNALHANNKQIVLTSDRTPDHLNNLEERLVTRFKWGLTVDITP 287 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSF 384 DYE R +IL N++ +++ + ++A ++ R+L+GA LV Sbjct: 288 PDYETRIAILTNKILEQG---FPYTFSQDTIEYLAGQFDSNVRDLEGALKDINLVATVKQ 344 Query: 385 APILTAEIADELLSHLVNTGETKKM-RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 A ++T ++A E + + I++IQ V+K Y ++ ++ S +R + +V RQ Sbjct: 345 ANVITVDLAAEAIRARKQDAPVINIISIDEIQTQVSKFYGVTVKEIKSTKRNQNIVLARQ 404 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAMYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E+E +K I Sbjct: 405 VAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIETIKNKIK 462 >gi|255324008|ref|ZP_05365133.1| chromosomal replication initiator protein DnaA [Corynebacterium tuberculostearicum SK141] gi|255298865|gb|EET78157.1| chromosomal replication initiator protein DnaA [Corynebacterium tuberculostearicum SK141] Length = 545 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 202/383 (52%), Gaps = 14/383 (3%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 + S S TN ++ P P + L+ + F +F+ GSSNR A AA Sbjct: 170 NQQQAESAGNFSGAATNSARIPREAPAH--DPNRETSLNPKHTFDSFVIGSSNRFANGAA 227 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 ++AE + Y NPLFI GLGKTHLL A N + P LRV Y+++E F Sbjct: 228 VAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAGNYAQVLHPGLRVKYVSSEEFTND 282 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAAD 299 + +++RD+ + K RN+D+L++DD+QFL+GK Q EF H N+L + KQ++ ++D Sbjct: 283 YINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 342 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 RPP +L +L+ R+R+R +GG+ + D E R +IL + + + ++ VL Sbjct: 343 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL-----MKKAANDGTEVDRSVLEL 397 Query: 360 VARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A +S REL+GA ++ S + E+A+ L L +++ I + Sbjct: 398 IASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDLAPDSADRQITATSIMEVT 457 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A+ ++I L + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A RK Sbjct: 458 AEFFDIDVETLRGAGKKRAVAHARQLAMYLCRELTELSLPKIGEQFGGKDHTTVIYADRK 517 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + K + E++ L + I+ Sbjct: 518 IRKEMTEKRNTYDEIQALTQRIT 540 >gi|325961451|ref|YP_004239357.1| chromosomal replication initiator protein DnaA [Arthrobacter phenanthrenivorans Sphe3] gi|323467538|gb|ADX71223.1| chromosomal replication initiator protein DnaA [Arthrobacter phenanthrenivorans Sphe3] Length = 474 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 137/484 (28%), Positives = 235/484 (48%), Gaps = 20/484 (4%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKN--QVGPDVYASWFQRL-KFHSVLHNIVHLSVPTNF 80 + VD+ S + V + L+ +V P F L + ++ + + ++VP Sbjct: 1 MTVDEANHANTVGSSWRRVLTLLEQDHRVSPRQ--RGFVILAQAQGLIGSTLLVAVPNEL 58 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 + ++ + + + S I V + +P ++ SP K Sbjct: 59 TREVLQTQVKDALDDALHNVFSEDIRCAIDVDTDLVPIHQEPEPVVVEPSFSPDQLIEQK 118 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 +L + L+ ++VF TF+ GSSNR A V NPLF Sbjct: 119 PQPMLPSTSHEF---GRLNPKYVFDTFVIGSSNRF-----AHAAAVAVAEAPAKAYNPLF 170 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ GLGKTHLL AI + + + +RV Y+ +E F F ++IRD+ + K + RN+ Sbjct: 171 IYGDSGLGKTHLLHAIGHYARRLYSGIRVRYVNSEEFTNDFINSIRDDEGASFKTTYRNV 230 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LLIDD+QFL GK EF H NSL ++ KQVV +D+PP L + R++SR + G Sbjct: 231 DVLLIDDIQFLAGKDRTLEEFFHTFNSLHNNNKQVVITSDQPPKLLAGFEDRMKSRFEWG 290 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + + + E R +IL+ + L+ ++ L ++A ++++ REL+GA ++ Sbjct: 291 LLTDIQPPELETRIAILRK-----KALSEGLSAPDDALEYIASKISSNIRELEGALIRVT 345 Query: 380 FRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 S + +A+ +L L+ +++ I + A+++ +S +L S R RT+ Sbjct: 346 AFASLNRQPVDVALAEMVLKDLITDDGAQEITSSQILQQTAEYFKLSMEELCSKSRTRTL 405 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ + +V L Sbjct: 406 VTARQIAMYLCRELTDMSLPKIGQELGGRDHTTVIHADRKIRELMAERRVIYNQVTELTN 465 Query: 499 LISE 502 I + Sbjct: 466 RIKQ 469 >gi|255326481|ref|ZP_05367563.1| chromosomal replication initiator protein DnaA [Rothia mucilaginosa ATCC 25296] gi|255296521|gb|EET75856.1| chromosomal replication initiator protein DnaA [Rothia mucilaginosa ATCC 25296] Length = 565 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 136/414 (32%), Positives = 210/414 (50%), Gaps = 15/414 (3%) Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-PIILGKQTISP 152 + + E + + VA + +P+ +P + P + + Sbjct: 156 LQALEAERAGFPSAQQPAAPVAGAPAPREYPAPTFVPDAPTVPEAQQVHPHEDPENAPTW 215 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ + F TF+ G SNR A +A ++AE Y NPLFI+ GLGKTHL Sbjct: 216 DSSARLNPNYTFDTFVIGQSNRFAHASAFAVAEQPGIVY-----NPLFIYGGSGLGKTHL 270 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI + + PNLRV Y+ +E F F ++IRD+ + K RN+D+LLIDD+QFL Sbjct: 271 LHAIGHYTKYLYPNLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDVLLIDDIQFLA 330 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK EF H N+L + KQ+V +D PP +L R+RSR G++V + + E Sbjct: 331 GKEATMEEFFHTFNALYNHQKQIVITSDLPPKQLTGFAERMRSRFGSGLNVDVQPPELET 390 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---L 388 R +IL+ + ++ L + ++V+ ++A VT + REL+GA + S + Sbjct: 391 RIAILRK-----KAQNEILPVRDDVMEYIASHVTANIRELEGALIRASAAASMKKPPEPI 445 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T A+ L L++ ++ + VAK++++S D+ S R RT+ RQVAMYL Sbjct: 446 TLAEAETYLKDLLSDTGGAEITSALVLATVAKYFDVSIEDMQSKSRTRTLTNARQVAMYL 505 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P IG G RDHTTV+HAVRKV + T+ +V L LI + Sbjct: 506 LRELTEMSLPRIGNDLGGRDHTTVMHAVRKVSAQMAERQTIFNQVTELTNLIRQ 559 >gi|169823698|ref|YP_001691309.1| chromosomal replication initiation protein [Finegoldia magna ATCC 29328] gi|303234453|ref|ZP_07321091.1| chromosomal replication initiator protein DnaA [Finegoldia magna BVS033A4] gi|167830503|dbj|BAG07419.1| chromosomal replication initiation protein [Finegoldia magna ATCC 29328] gi|302494408|gb|EFL54176.1| chromosomal replication initiator protein DnaA [Finegoldia magna BVS033A4] Length = 485 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 145/493 (29%), Positives = 247/493 (50%), Gaps = 35/493 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + ++ +S+ K ++ + +W LK + + L P F K I N+Y + Sbjct: 2 TDKDELWLKISNTFKQEMSDLNFNTWIAPLKPLYLTNTEFILLSPNRFTKKTIYNKYYDD 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPS------------------VEKTASSPSITKLSPI 134 I K + + V I+ R V + S P+ Sbjct: 62 IQKYLDFISNVKRKVVIIDRYEMDNYKDENIIQNQNIDGQRSILVNEDESEEKYKIEDPV 121 Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 T ++ +QT +G L +++ F TF++G +N +AL AA ++A+ + Y Sbjct: 122 ATQPEQTQEQAEEQTDFSPYGKNLIAKYKFDTFVKGKNNELALAAALAVAQNPATAY--- 178 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA---L 251 NPLFIH GLGKTHL+ AIA+ +K P RV+Y T+E F S+I D Sbjct: 179 --NPLFIHGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTKKNS 236 Query: 252 NLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 + RNID+LLIDD+QF+ GK Q EF H N L + KQ++ ++DRPP E+++L+ Sbjct: 237 QFRQKYRNIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKTLEE 296 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R+ SR + G+ + DYE R +I+ L + ++ E++ ++A V ++ RE Sbjct: 297 RLVSRFEWGLMADIQPPDYETRVAIVNEYLDRNNT-----SLPPEIIDYIAMNVKSNIRE 351 Query: 371 LDGAFNQLVFRHSFAPI--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 L+GA +V + + +T ++A +L L+ + + + I+ I V YN++ +D Sbjct: 352 LEGAVMNVVGQKTLIGDGNITLDLAKNVLKQLIAETQLRPVTIDLIIECVCDRYNVTLDD 411 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 LLS +R + + PRQ+AMY+S+ + S I FG +DH+TV+H ++K+E ++ + Sbjct: 412 LLSKKRSKQIAYPRQIAMYVSRKLLDISLVSIASSFG-KDHSTVMHGIKKIESDIKKNSE 470 Query: 489 LKKEVELLKRLIS 501 +E+E L I Sbjct: 471 FDEEIENLINYIQ 483 >gi|315187335|gb|EFU21091.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6578] Length = 452 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 240/471 (50%), Gaps = 29/471 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ++ + L+ + + WF + ++ + + VP++F++ IK RY I Sbjct: 6 DYSIVWKETLNLLRGVLSEQEFRLWFFEVDYYDGSEETLRIRVPSSFVRDQIKQRYQRLI 65 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E R ++ +V +L A ++ SP + P Sbjct: 66 EDKFYELLGRKLLLDFVVEKRSL------AQERPVSSSSPQREIPKERPPHP-------- 111 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L + F F+ G A + A + NP I+ VGLGKTHLL Sbjct: 112 ---QLRRDYTFENFVIGE-----NNAFAANAALAIAKNPGTAYNPCLIYGGVGLGKTHLL 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 Q+I N+ NL+VVY+TAE F F ++I++ K RN+D+LLIDD+ F Sbjct: 164 QSIGNSVYGEFQNLKVVYVTAEEFTNEFIASIQNKETHKFKTKYRNVDVLLIDDIHFFMN 223 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q E H N+L D+ KQ+V DRP SEL+++ R+RSR + G++V L +E R Sbjct: 224 KTETQEELFHTFNALYDANKQMVFTCDRPVSELKNISHRLRSRFERGLNVDLQPPSFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 ++ILK + E ++I +EV+ +A VTT+ R+L+ A +L+ +T + Sbjct: 284 YAILKK-----KIEQKPIHIPDEVITFIAEHVTTNVRDLEAALTKLIAYAELVHRDITID 338 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 IA L + T + + I+ IQ++VA ++ I+++DL + +R RTVV PRQ+AMY+++ Sbjct: 339 IAKSQLKDMFTTTKQTNITIDLIQKVVADYFGITQSDLRNKKRTRTVVFPRQIAMYIARE 398 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S EIG FG RDHTTV++A++K+E + TD TL + L R + E Sbjct: 399 LTEYSTTEIGEYFGGRDHTTVMYAIQKIESKMRTDPTLDTIIAQLIREVQE 449 >gi|227831831|ref|YP_002833538.1| chromosomal replication initiator protein [Corynebacterium aurimucosum ATCC 700975] gi|262183095|ref|ZP_06042516.1| chromosomal replication initiation protein [Corynebacterium aurimucosum ATCC 700975] gi|254777897|sp|C3PE72|DNAA_CORA7 RecName: Full=Chromosomal replication initiator protein DnaA gi|227452847|gb|ACP31600.1| chromosomal replication initiator protein [Corynebacterium aurimucosum ATCC 700975] Length = 546 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 122/379 (32%), Positives = 202/379 (53%), Gaps = 12/379 (3%) Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 S + + + I + +P L+ + F F+ GSSNR A AA ++A Sbjct: 173 SEQQSTAPSGYPEATGARIPREEPAHNPNREKSLNPKHTFENFVIGSSNRFANGAAVAVA 232 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 E + Y NPLFI GLGKTHLL A N + P LRV Y+++E F + ++ Sbjct: 233 ENPARAY-----NPLFIWGGSGLGKTHLLHAAGNYAQVLHPGLRVKYVSSEEFTNDYINS 287 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +RD+ + K RN+D+L++DD+QFL+GK Q EF H N+L + KQ++ ++DRPP Sbjct: 288 LRDDRQESFKRRYRNLDILMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPK 347 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L +L+ R+R+R +GG+ + D E R +IL + + +++ VL +A Sbjct: 348 QLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL-----MKKASADGTDVDRSVLELIASR 402 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 +S REL+GA ++ S ++ E+A+ L L +++ I + A ++ Sbjct: 403 FESSIRELEGALIRVSAYSSLVNEPISLEMAEIALHDLAPDSADRQITAAAIIEVTADYF 462 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 NI + L + + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A RK+ K Sbjct: 463 NIDVDTLRGSGKKRAVAHARQLAMYLCRELTELSLPKIGDQFGGKDHTTVIYADRKIRKE 522 Query: 483 LETDITLKKEVELLKRLIS 501 + + E++ L + + Sbjct: 523 MTENRNTYDEIQALTQRVK 541 >gi|148651819|ref|YP_001278912.1| chromosomal replication initiator protein DnaA [Psychrobacter sp. PRwf-1] gi|148570903|gb|ABQ92962.1| chromosomal replication initiator protein DnaA [Psychrobacter sp. PRwf-1] Length = 470 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 132/476 (27%), Positives = 238/476 (50%), Gaps = 24/476 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S++ + L+ Q+ + + W + L H ++ + + L P + + ++ + I L Sbjct: 6 SLWDRCLNDLRYQLKENEFTMWLRPLSAH-IIGDKLELLAPNQYFVSHVQQHHFAAIEVL 64 Query: 97 F-QEEHSRIQGVEILVRSVALPSVE--------KTASSPSITKLSPINTNISKSPIILGK 147 Q + I+ V I V S + +A + + + N Sbjct: 65 AKQHSNGEIRQVVIQVESSVHSGGQTKAGHTTLASAQNGPVVMSAQQNLQTQNEEDADAA 124 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 Q S S ++ F F TF+ G SN +A A Q + + R NPLF++ GL Sbjct: 125 QMASDKSLSYINPYFTFETFVSGKSNMLAYKACQEL----GKKQSQNRHNPLFLYGPSGL 180 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ ++A+ +K Y ++E F+ + A+R+ K ++ +DLL+IDD Sbjct: 181 GKTHLMHSVAHRYLKI--GKTFYYFSSEKFINQLVYALRNQKIEEFKRKIKRVDLLIIDD 238 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + L GK +EF L + KQV+ A+DR PS++ D R RSR G++V + Sbjct: 239 VHVLAGKNKSSNEFLSLFADFMVEGKQVILASDRHPSQMTEFDERFRSRFSSGLAVAIEP 298 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + E R IL+ + +++ +E + +A+ V ++ R L+GA NQ+V + Sbjct: 299 PEMETRMQILQK-----KAHLSGVDLPKECALFIAQNVVSNVRRLEGALNQVVATANLTG 353 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + ++ L ++ ++ + +++I+++VA++Y++S DL+S +R R++ RPRQ+A Sbjct: 354 NPIDLDMVQYALKDVIAIR-SQAVSMDNIRKVVAEYYDVSVKDLMSKKRTRSIARPRQIA 412 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L++ +T SFP+IG+ FG RDHTTV+HA K+ ++ D L KE + L + Sbjct: 413 MALARELTKDSFPDIGQSFGGRDHTTVMHACDKIAQLRSEDPVLDKEYKALSMTLQ 468 >gi|237814480|ref|YP_002898931.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei MSHR346] gi|237504967|gb|ACQ97285.1| chromosomal replication initiator protein DnaA [Burkholderia pseudomallei MSHR346] Length = 459 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 89 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 148 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 149 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 203 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 204 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 263 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 264 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 318 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 319 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 377 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 378 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 437 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 438 DERGKDAQLNHELHVLEQTLK 458 >gi|320547711|ref|ZP_08041996.1| DNA-directed DNA replication initiator protein [Streptococcus equinus ATCC 9812] gi|320447786|gb|EFW88544.1| DNA-directed DNA replication initiator protein [Streptococcus equinus ATCC 9812] Length = 451 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 143/478 (29%), Positives = 241/478 (50%), Gaps = 34/478 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V K+Q+ Y + + + NI + +K + Sbjct: 1 MTENEQIFWNRVLELAKSQLKQATYEFFVLDARLIQIEQNIATIY------LDPMKELFW 54 Query: 91 E-TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + + + EI+V + + K A + +++ + K++ Sbjct: 55 DKNLKPIILTAGFEVYNAEIVVNYIFEEDLAKQAVAKPTSQV-----------LQAPKKS 103 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P S L++++ F F++G NR A +A+ ++A+ Y NPLFI GLGK Sbjct: 104 NLPQVDSDLNTKYTFDNFVQGDENRWAFSASYAVADAPGTTY-----NPLFIWGGPGLGK 158 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI NA ++ P RV Y+TAE F+ F IR + LK+ RN+D+LLIDD+Q Sbjct: 159 THLLNAIGNAVLQNNPKARVKYITAENFINEFVIHIRLDTMEELKEKFRNLDVLLIDDIQ 218 Query: 270 FLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 L K Q EF + N+L D+ KQ+V +DR P L++L+ R+ +R + G+++ + Sbjct: 219 SLAKKTLSGTQEEFFNTFNALYDNNKQIVLTSDRTPDHLDNLEQRLVTRFKWGLTINITP 278 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSF 384 D+E R +IL N + ++ ++ + ++A ++ R+L+GA LV Sbjct: 279 PDFETRVAILTN-----KTQEYDFVFPQDTIEYLAGQFDSNVRDLEGALKDISLVASIKK 333 Query: 385 APILTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 A +T +IA E + G + IE+IQ V K Y ++ ++ + +R + +V RQ Sbjct: 334 AKTITVDIAAEAIRARKQDGPKMTVIPIEEIQSQVGKFYGVTVKEIKATKRTQDIVLARQ 393 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAMYL++ MT S P+IG+ FG RDH+TVLHA K++ M+ D L+ E+E +K I Sbjct: 394 VAMYLTREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIAQDNNLRIEIETIKNKIK 451 >gi|306821799|ref|ZP_07455394.1| ribosomal subunit interface protein [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550166|gb|EFM38162.1| ribosomal subunit interface protein [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 442 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 126/474 (26%), Positives = 240/474 (50%), Gaps = 39/474 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQR--LKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ I+ + + K + P Y ++F F+ N + L F I+ Sbjct: 1 MDGLMIWKSILNTYKENINPSFYNTFFGNNATDFYEFFDNTIFLKCSNEF----IRENLS 56 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + K+ +++ +I ++ + + + + + + Sbjct: 57 KELDKIHDIARNKLNLGDITIKLILHDNEVQKIVKDNYQRENKYT--------------- 101 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 ++ F F+ G+SN +A A ++AE + NPLF++ VGLGKT Sbjct: 102 ----------KYTFDAFVTGTSNNLAYAACIAVAENPAFETPKDAYNPLFLYGGVGLGKT 151 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+ AI+N ++ PN +V Y+++E F F ++++ + +D R +D +LIDD+QF Sbjct: 152 HLMHAISNRIKEKNPNYKVSYISSETFTNDFIYSLQNRKTQDFRDKYRELDAILIDDVQF 211 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 K Q E H N L + KQ++ ++DRPP EL +L+ R+RSR G+++ + D+ Sbjct: 212 FADKDTTQEELFHTFNELYSANKQIILSSDRPPKELTTLEDRLRSRFGMGLTIDIQPPDF 271 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R +IL+ + +K ++ +VL +A+ + + REL+GA N++ + + Sbjct: 272 ETRVAILEKKCETDRK-----DVPRDVLNLIAKNIKANIRELEGALNKVCAYSNLMKRPI 326 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E+A+E+L+ L + +++ + I+ +VA+ ++I +D S ++ + + PRQ+AMYL Sbjct: 327 SFELANEVLNDLFDKNSDRQLSSDYIKEVVAREFSIKYDDFSSKKKTKNIAYPRQIAMYL 386 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT-LKKEVELLKRLIS 501 K + S +IG FG+RDHTTV+HA +KVE+ +++ + VE L + I Sbjct: 387 CKELMDMSLSKIGEEFGNRDHTTVIHACKKVEEDIQSKKENMDMIVEKLIKKIK 440 >gi|207727478|ref|YP_002255872.1| chromosomal replication initiator DnaA [Ralstonia solanacearum MolK2] gi|206590715|emb|CAQ56327.1| chromosomal replication initiator protein dnaa [Ralstonia solanacearum MolK2] Length = 534 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 128/393 (32%), Positives = 206/393 (52%), Gaps = 13/393 (3%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 + + + E A S + +P +S S + S L+ F + G Sbjct: 152 IDVPVMDAAEARAQSYRMPASAPPAAMMSLSAPPAAPVDDTVHERSRLNPILTFDNLVTG 211 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 +N++A AA +A Y NPL+++ VGLGKTHL+ AI N + P R+ Sbjct: 212 KANQLARAAAVQVANNPGKSY-----NPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIR 266 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 Y+ AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ Sbjct: 267 YIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIA 326 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + Sbjct: 327 NRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MKKAQAEN 381 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 + + EEV VA+ + ++ REL+GA +++ +F +T E+ E L L+ T + ++ Sbjct: 382 VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDLL-TVQNRQ 440 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RD Sbjct: 441 ISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRD 500 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHAVRK+ D L E+ +L++ + Sbjct: 501 HTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 533 >gi|302380126|ref|ZP_07268599.1| chromosomal replication initiator protein DnaA [Finegoldia magna ACS-171-V-Col3] gi|302312068|gb|EFK94076.1| chromosomal replication initiator protein DnaA [Finegoldia magna ACS-171-V-Col3] Length = 487 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 145/495 (29%), Positives = 251/495 (50%), Gaps = 37/495 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + ++ +S+ K ++ + +W LK + + L P F K I N+Y + Sbjct: 2 TDKDELWLKISNTFKQEMSDLNFNTWIAPLKPLYLTNTEFILLSPNRFTKKTIYNKYYDD 61 Query: 93 ITKLFQEEHSRIQGVEILVRSV--------------------ALPSVEKTASSPSITKLS 132 I K + + V I+ R L + +++ I + Sbjct: 62 IQKYLDFISNVKRKVVIIDRYEMDNYKDENIIQNQNIDGQRSILVNEDESEEKYKIEDTN 121 Query: 133 PINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 P+ T ++ +QT +G L +++ F TF++G +N +AL AA ++A+ + Y Sbjct: 122 PVATQPEQTQEQAEEQTDFSPYGKNLIAKYKFDTFVKGKNNELALAAALAVAQNPATAY- 180 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-- 250 NPLFIH GLGKTHL+ AIA+ +K P RV+Y T+E F S+I D Sbjct: 181 ----NPLFIHGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTKK 236 Query: 251 -LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + RNID+LLIDD+QF+ GK Q EF H N L + KQ++ ++DRPP E+++L Sbjct: 237 NSQFRQKYRNIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKTL 296 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+ SR + G+ + DYE R +I+ L + ++ E++ ++A V ++ Sbjct: 297 EERLVSRFEWGLMADIQPPDYETRVAIVNEYLDRNNT-----SLPPEIIDYIAMNVKSNI 351 Query: 369 RELDGAFNQLVFRHSFAPI--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA +V + + +T ++A +L L+ + + + I+ I V YN++ Sbjct: 352 RELEGAVMNVVGQKTLIGDGNITLDLAKNVLKQLIAETQLRPVTIDLIIECVCDRYNVTL 411 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 +DLLS +R + + PRQ+AMY+S+ + S I FG +DH+TV+H ++K+E ++ + Sbjct: 412 DDLLSKKRSKQIAYPRQIAMYVSRKLLDISLVSIASSFG-KDHSTVMHGIKKIESDIKKN 470 Query: 487 ITLKKEVELLKRLIS 501 +E+E L I Sbjct: 471 SEFDEEIENLINYIQ 485 >gi|311741699|ref|ZP_07715521.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035] gi|311303220|gb|EFQ79301.1| exopolyphosphatase [Corynebacterium pseudogenitalium ATCC 33035] Length = 545 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 201/383 (52%), Gaps = 14/383 (3%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 + S S TN ++ P P + L+ + F +F+ GSSNR A AA Sbjct: 170 NQQQAESAGNFSGAATNSARIPREAPAH--DPNRETSLNPKHTFDSFVIGSSNRFANGAA 227 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 ++AE + Y NPLFI GLGKTHLL A N + P LRV Y+++E F Sbjct: 228 VAVAENPARAY-----NPLFIWGGSGLGKTHLLHAAGNYAQVLHPGLRVKYVSSEEFTND 282 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAAD 299 + +++RD+ + K RN+D+L++DD+QFL+GK Q EF H N+L + KQ++ ++D Sbjct: 283 YINSLRDDRQESFKRRYRNLDILMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSD 342 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 RPP +L +L+ R+R+R +GG+ + D E R +IL + + + ++ VL Sbjct: 343 RPPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAIL-----MKKAANDGTEVDRSVLEL 397 Query: 360 VARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A +S REL+GA ++ S + E+A+ L L +++ I + Sbjct: 398 IASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDLAPDSADRQITATSIMEVT 457 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A+ ++I L + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A RK Sbjct: 458 AEFFDIDVETLRGAGKKRAVAHARQLAMYLCRELTELSLPKIGEQFGGKDHTTVIYADRK 517 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + K + E++ L + I Sbjct: 518 IRKEMTEKRNTYDEIQALTQRIK 540 >gi|310817279|ref|YP_003949637.1| chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] gi|309390351|gb|ADO67810.1| Chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] Length = 450 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 144/466 (30%), Positives = 238/466 (51%), Gaps = 38/466 (8%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ ++ G +W +R+ V + L VP F + W+ + Y + Sbjct: 17 VWARTLETIRQD-GKTYALTWLERMCALDVREGALVLGVPDRFFRDWVDDHYRALLESTL 75 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + V V + P + +++ +P+ P Sbjct: 76 ARVGEGLGRVAYEV-----------------VEAPPPSVHLAPTPVTATNAMRPP----R 114 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L RF F TF+ SN++ AA ++A+ H Y NPL+I+ GLGKTHLL A+ Sbjct: 115 LSPRFTFGTFVVADSNQLPAAAAAAVADKPGHHY-----NPLYIYGGTGLGKTHLLHAVG 169 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGK-L 275 N +R P RVVYL++E F + ++R++ + R+ D+LLIDD+QFL + Sbjct: 170 NLIWERNPAQRVVYLSSEQFTNEYVESVREHRMTEFRRKFRDECDVLLIDDIQFLGKREE 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF + N+L + K +V +D PSE+ L+ R+RSR G+ + YE R +I Sbjct: 230 TQKEFFYTFNTLYEQNKAIVLTSDTVPSEIPGLEDRLRSRFAMGLLTDIREPSYETRVAI 289 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIAD 394 L+ + E L + ++V +A+ + + REL+GA +L HS + + +T E A Sbjct: 290 LQK-----KAEAEGLGLPDDVAHFIAKHIQKNVRELEGALVKLSAIHSLSRLPVTVEFAA 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++L ++ T ++ + +E IQR VA++Y ++ L +RR + + RQVAMYLS+ +T Sbjct: 345 QVLKDILPTHQS--VDVESIQREVARYYKVTVEALREDRRHKALAHARQVAMYLSRKLTK 402 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SFPEI RF ++DH+TV+ AVRKVE + ETD LK+E++ L+ + Sbjct: 403 SSFPEIASRF-NKDHSTVISAVRKVEGLRETDAGLKRELDELEAKL 447 >gi|78212507|ref|YP_381286.1| chromosomal replication initiation protein [Synechococcus sp. CC9605] gi|78196966|gb|ABB34731.1| chromosomal replication initiator protein DnaA [Synechococcus sp. CC9605] Length = 450 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 138/459 (30%), Positives = 239/459 (52%), Gaps = 19/459 (4%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ ++ + ++ + + + L P F ++ + L TI ++ + Sbjct: 1 MQAKLSKPTFETFIRPTGCSGFANGELKLLAPNPFASVRLREQLLPTIAEMASSISGQPV 60 Query: 106 GVEILVRSV-ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVF 164 V +L + LP AS+ + P + +P G Q + L+ R+VF Sbjct: 61 QVTVLAETALPLPDATDEASAAADAAPPPAAQESASAPARNGFQR---RYLPGLNPRYVF 117 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F+ G ++R+A AA ++AE NPLFI VGLGKTHL+QAI + ++ Sbjct: 118 GRFVVGPNSRMAHAAALAVAEAPGR-----EFNPLFICGGVGLGKTHLMQAIGHYRLEID 172 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHL 283 P RV Y++ E F AIR + +D R DL+L+DD+QF++GK Q EF H Sbjct: 173 PGARVAYVSTETFTNDLIQAIRKDGMQAFRDRYRAADLILVDDIQFIEGKEYTQEEFFHT 232 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L ++ +QVV A+DRPPS++ L R+ SR Q G+ + D E R +IL+ Sbjct: 233 FNALHEAGRQVVIASDRPPSQIPRLQQRLISRFQMGLIADIQSPDLETRMAILQK----- 287 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLV-N 402 + E ++++ +++ ++A T++ REL+GA + V FA I + E ++ ++ Sbjct: 288 KAEQERMSLPRDLIQYIAGRFTSNIRELEGALTRAVA---FASITGLPMTVESVAPMLDP 344 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 TG+ ++ + + V++ ++++ ++ S+ R R V + RQV MYL + T S P IG Sbjct: 345 TGQGVEVTPQQVIDKVSEVFDVTAEEMCSSTRRRAVSQARQVGMYLMRQGTDLSLPRIGD 404 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG +DHTTV++A+ +VEK L +D L +V+ +K L+ Sbjct: 405 NFGGKDHTTVMYAIEQVEKKLASDPQLAGQVQKVKDLLQ 443 >gi|304382865|ref|ZP_07365348.1| DNA-directed DNA replication initiator protein [Prevotella marshii DSM 16973] gi|304336050|gb|EFM02297.1| DNA-directed DNA replication initiator protein [Prevotella marshii DSM 16973] Length = 489 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 129/474 (27%), Positives = 226/474 (47%), Gaps = 17/474 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNR 88 +E ++++ V ++ V Y +WF+ + F S + L V P+ F+ +++ Sbjct: 21 MEATPKALWEYVLKFIRENVSEQTYDTWFKPVVFESFNTSTKTLLVRVPSRFIYEYLEEN 80 Query: 89 YLETITKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 + + +TK + ILV + ++E S P+ P +T P + Sbjct: 81 FTDLLTKGLTRAYGIGVHLNYRILVDKINNQTLE-VESDPAAAIDRPQSTTTGNRPPSVL 139 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + S L+ F FIEG SN++ + SIAE + NP+FI+ G Sbjct: 140 DAAMPQQIESQLNPHQTFRNFIEGDSNKLPRSVGMSIAEHPE----GTQFNPMFIYGPSG 195 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 GKTHL+ AI + + P RV+Y++A F +F +A+ N + + + IDLLL+D Sbjct: 196 CGKTHLINAIGVRTKELYPEKRVLYISARLFQVQFTNAVLQNSTNDFINFYQTIDLLLVD 255 Query: 267 DMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q Q F H+ N L + K++V A DRPP EL+ ++ R+ +R G+ L Sbjct: 256 DIQEWMTATKTQDTFFHIFNHLFRNGKRIVLACDRPPVELKGMNDRLLTRFSCGLIAELE 315 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 + ++ +IL + L I +V+ ++A+T S R+L G N L+ + Sbjct: 316 RPNVQLCRNILDTEIRRE-----GLKIPADVVEYIAQTANESVRDLQGVVNSLMAYSVVY 370 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + +A+ ++ V K + I+DI V H+N+S + S R + +V RQV Sbjct: 371 NSNIDMRLAERVIKRAVKVD-NKPLTIDDILETVCHHFNVSATAVNSKSRKKDIVTARQV 429 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +MYL++ T IG+ G RDH+TV+H+ ++E L+ D E+ +++ Sbjct: 430 SMYLAQKYTKMPAARIGKLVGGRDHSTVIHSCSQIEARLKLDHAFGNELTSIEK 483 >gi|319940693|ref|ZP_08015035.1| chromosomal replication initiator protein dnaA [Sutterella wadsworthensis 3_1_45B] gi|319805844|gb|EFW02611.1| chromosomal replication initiator protein dnaA [Sutterella wadsworthensis 3_1_45B] Length = 454 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 143/479 (29%), Positives = 245/479 (51%), Gaps = 42/479 (8%) Query: 36 ESIFTIVSSRLK--NQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ + LK Q P +Y +WF+ LK + I+ L P + +I+ Y + Sbjct: 2 QAFWQQCLESLKRLTQNTPKIYTTWFEVLKPTYWNEKDGILTLEAPATKI-TYIRGAYQK 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 +I+ + H V ++ ++ P+ S + + I Sbjct: 61 SISAVATRIHGSAVAVSLV-----------------PAQVKPVQREESGTSHPPSETEIK 103 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L F ++ G++N++A+ AA+ +A Y NPL+I+ VGLGKTH Sbjct: 104 RREETGLLPGLTFENYVNGNANQLAVAAAEHVATTTGTQY-----NPLYIYGGVGLGKTH 158 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA------LNLKDSLRNIDLLLI 265 L+QAI + + P RV ++A+ F+ + SA+R++ + R++DLLLI Sbjct: 159 LMQAIGHRYLDLHPKARVRCVSAQDFINEYTSAVRESTNKTHASLEKFDERYRSLDLLLI 218 Query: 266 DDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q L G K Q +F +L+ KQ+V +D L+ ++PR+ SRL G+SV + Sbjct: 219 DDVQSLSGAKGSQGQFFRAFEALVPHNKQLVITSDTYTRGLKDIEPRLISRLSQGLSVAI 278 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 ++EMR +IL +++ + +++ +EV ++A+ + ++ REL+GA Q+V F Sbjct: 279 EPPEFEMRTAIL-----LNKAKTMGVDLPDEVAAYIAKRLKSNVRELEGALQQVVAYQQF 333 Query: 385 APILTAEIADELLSHLVNTGE---TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 + EI ++ ++ + IE+IQ+ VA +Y I D+ S RR + RP Sbjct: 334 QATSSREITIDIAKRVLREQFQVVNSLITIENIQKTVADYYKIKVADMHSKRRPANIARP 393 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL+K +T S PEIG FG RDHTTV+HAVRK+ + + D L E+ +L+++I Sbjct: 394 RQIAMYLTKELTQHSLPEIGENFGGRDHTTVMHAVRKITQERQNDAELNHEIHVLEQMI 452 >gi|167957122|ref|ZP_02544196.1| chromosomal replication initiation protein [candidate division TM7 single-cell isolate TM7c] Length = 467 Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 238/467 (50%), Gaps = 17/467 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++++ + ++ V + +W + + + V ++ +F ++ RY I + Sbjct: 14 DTLWKSILGEIQLSVSHGTFEAWLKPTELIDTNESNVRIAARNSFAVRQLETRYDRLIRQ 73 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK-QTISPVF 154 ++ + Q V ++ S +KT + IT+ +PI+ + + + Sbjct: 74 ALEKNGIKAQKVTYEIKR----SGKKTVINREITRQAPISERVQQLTAPQNILSRSNQDK 129 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ R+ F FI GSSN +A Q++A Y NPLF++ VGLGKTHL+Q Sbjct: 130 KISLNPRYTFDNFIVGSSNDLAYATCQAVASHPGEKY-----NPLFLYGGVGLGKTHLMQ 184 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A N IK P +++Y T E F+ F IR RN+D+L++DDMQF+ GK Sbjct: 185 ATGNEIIKNNPQAQILYTTTENFIKDFLDHIRFKKQG-FSSKYRNVDVLIVDDMQFIAGK 243 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N L + KQ++ ++D+PP + +L R+RSR + G+++ + + D+E R Sbjct: 244 EKTQEEFFHTFNELHQNNKQIIISSDKPPKSIPTLTDRLRSRFEWGMTIDIQMPDFETRC 303 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIA 393 +I++ ++ + ++ E ++A+ + T+ REL+G+ NQL+ I Sbjct: 304 AIVE-----AKASLSGVELSRETAEYLAQNIKTNIRELEGSLNQLLALAEMRGIEPDIQV 358 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 E L + + + + I A+++ + +++ S++R + + PRQ+AMYL + Sbjct: 359 AEGLIGNIRQTRPRHITAKQIIDKTARYFQLQTSEVCSSKRDKHIALPRQIAMYLLRSEL 418 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SFP+I G +DHTT +H++ K+E+ ++ D T++++V +K + Sbjct: 419 HLSFPKIAAELGRKDHTTAIHSINKIERAIKLDFTIREQVNEIKEKL 465 >gi|241661626|ref|YP_002979986.1| chromosomal replication initiation protein [Ralstonia pickettii 12D] gi|240863653|gb|ACS61314.1| chromosomal replication initiator protein DnaA [Ralstonia pickettii 12D] Length = 529 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 129/393 (32%), Positives = 207/393 (52%), Gaps = 14/393 (3%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 + + + E +A S + +P +P S S L+ F F+ G Sbjct: 148 IDVPVMDAAEVSAQSYRMPPQAPAVVTSLAAP-PQAPVDDSVHERSRLNQILTFDNFVTG 206 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 +N++A AA +A Y NPL+++ VGLGKTHL+ AI N + P R+ Sbjct: 207 KANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIR 261 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 Y+ AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ Sbjct: 262 YIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIA 321 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + Sbjct: 322 NRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MKKAQAEN 376 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 + + EEV VA+ + ++ REL+GA +++ +F +T E+ E L L+ T + ++ Sbjct: 377 VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDLL-TVQNRQ 435 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RD Sbjct: 436 ISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRD 495 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHAVRK+ D L E+ +L++ + Sbjct: 496 HTTVLHAVRKIADERTKDAQLNHELHVLEQTLK 528 Score = 81.6 bits (200), Expect = 3e-13, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 44/127 (34%), Gaps = 2/127 (1%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYLETI 93 + + S++L++++ P + +W + L S L + P F W+K+++ I Sbjct: 2 QDFWHAASAQLESELTPQQFKTWIKPLTPLSFDEQACTLRIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 L + V+ ++ A + + + P+ + + Sbjct: 62 QSLACDYWEATVDVQFVLDPTAGQRQAALQPALAPVPMQPLGAQAGQQRQAMPAGNGVSH 121 Query: 154 FGSPLDS 160 + L Sbjct: 122 DAATLRP 128 >gi|41406099|ref|NP_958935.1| chromosomal replication initiation protein [Mycobacterium avium subsp. paratuberculosis K-10] gi|13431486|sp|Q9L7L7|DNAA_MYCPA RecName: Full=Chromosomal replication initiator protein DnaA gi|6969271|gb|AAF33692.1| putative dnaA [Mycobacterium avium subsp. paratuberculosis] gi|41394447|gb|AAS02318.1| DnaA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 509 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 134/509 (26%), Positives = 240/509 (47%), Gaps = 57/509 (11%) Query: 37 SIFTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 +++ V S L + + P +W ++ +++ LSVP++F Sbjct: 11 TVWNAVVSELNGEPVADGGAANRTTLVTPLTPQQ-RAWLNLVRPLTIVEGFALLSVPSSF 69 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 ++ I+ IT + +++ VR P + A P + +S Sbjct: 70 VQNEIERHLRAPITDALSRRLGQ--QIQLGVRIAPPPDDVEDAPIPPAEPFPDTDAALSA 127 Query: 141 SPIILGKQTISP-------------------------VFGSPLDSRFVFSTFIEGSSNRV 175 G+ + G+ L+ R+ F TF+ G+SNR Sbjct: 128 DDGADGEPVENGEPVTDTQPGWPNYFTERPHAIDPAVAAGTSLNRRYTFDTFVIGASNRF 187 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A + NPLFI GLGKTHLL A N + + P +RV Y++ E Sbjct: 188 -----AHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 242 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQV 294 F F +++RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+ Sbjct: 243 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 302 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L + + Sbjct: 303 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPD 357 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIED 413 +VL +A ++ + REL+GA ++ S + +A+ +L L+ T ++ Sbjct: 358 DVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLIADASTMQISAAT 417 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I A++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV+ Sbjct: 418 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVM 476 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLISE 502 +A RK+ + + V+ L I + Sbjct: 477 YAQRKILSEMAERREVFDHVKELTTRIRQ 505 >gi|298243778|ref|ZP_06967585.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] gi|297556832|gb|EFH90696.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] Length = 514 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 146/523 (27%), Positives = 244/523 (46%), Gaps = 67/523 (12%) Query: 33 VNCESIFTIVSSRL-KNQVGPDVYASWFQRLKF-----------HSVLHNIVHLSVPTNF 80 +N +I+ RL +++ V W Q L V + Sbjct: 1 MNTATIWRSTLERLLQHESLDPVTRQWLQEAHLLASQTTEGGAHEEKESLYFSLQVHNDL 60 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP-SVEKTASSPSITKLSPINTN-- 137 + + + +LE + + QE R +E+ P V++ ++P + + N Sbjct: 61 ARDVLTSHWLEVMEEALQEVTGRTIVLEVTHEPGEEPLPVQEEVATPHLAASTSAAQNGY 120 Query: 138 --------------------------------------ISKSPIILGKQTISPVFGSPLD 159 S+ +Q + + L+ Sbjct: 121 NFYDRSINRSIPHKAARTPEAPSYEQNAASYQSFQAGVASQQEQWENEQRSGILTNNRLN 180 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 R+ F TFI G+SNR+A A+ ++AE Y NPLF++ VGLGKTHLL AI Sbjct: 181 PRYSFDTFIVGNSNRLAHAASLAVAEAPGESY-----NPLFLYGGVGLGKTHLLHAIGQQ 235 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 ++ L V+Y+++E F +AIR + R++D+LL+DD+QF+ GK + Sbjct: 236 GVQT--GLAVLYVSSEQFTNEIINAIRYRTTEEFRAKYRSVDILLVDDIQFIAGKESTEE 293 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H NSL + +KQ+V +DRPP + SL+ R+RSR + G+ + D E R +IL+ Sbjct: 294 EFFHTFNSLHEMSKQIVICSDRPPKAIASLEERLRSRFEWGLVADIQPPDLETRMAILR- 352 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELL 397 + + + +E++ ++A V T+ REL+G N+L+ + LT ++A + Sbjct: 353 ----VKADALHYRVPDEIISYIAGRVQTNIRELEGCLNRLMAYQQLHRVDLTLDVARAAM 408 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 S L + I + VA +Y +S + S +R + +V PRQVAMYL + T S Sbjct: 409 SSLGADHRETHLDGRQIAQAVADYYRVSFEAMCSKQRDKHIVAPRQVAMYLIRQETQISL 468 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 EIG+ FG RDH+TVLHA K+E+ L+ + TL+++V ++ + Sbjct: 469 FEIGQLFGKRDHSTVLHACEKIERNLKQNPTLRQDVSTIREQL 511 >gi|283457090|ref|YP_003361653.1| DNA replication initiation ATPase [Rothia mucilaginosa DY-18] gi|283133068|dbj|BAI63833.1| ATPase involved in DNA replication initiation [Rothia mucilaginosa DY-18] Length = 564 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 134/414 (32%), Positives = 208/414 (50%), Gaps = 15/414 (3%) Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS-PIILGKQTISP 152 + E + + + + +P+ +P + P + + Sbjct: 155 LHALEAERAGFPSAQQAAPVAPVAGAPREYPAPTFVPDAPAVPEAQQVHPHEDPENAPTW 214 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ + F TF+ G SNR A +A ++AE Y NPLFI+ GLGKTHL Sbjct: 215 DSSARLNPNYTFDTFVIGQSNRFAHASAFAVAEQPGIVY-----NPLFIYGGSGLGKTHL 269 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI + + PNLRV Y+ +E F F ++IRD+ + K RN+D+LLIDD+QFL Sbjct: 270 LHAIGHYTKYLYPNLRVRYVNSEEFTNDFINSIRDDEGSSFKQIYRNVDVLLIDDIQFLA 329 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK EF H N+L + KQ+V +D PP +L R+RSR G++V + + E Sbjct: 330 GKEATMEEFFHTFNALYNHQKQIVITSDLPPKQLTGFAERMRSRFGSGLNVDVQPPELET 389 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---L 388 R +IL+ + ++ L + ++V+ ++A VT + REL+GA + S + Sbjct: 390 RIAILRK-----KAQNEILPVRDDVMEYIASHVTANIRELEGALIRASAAASMKKPPEPI 444 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T A+ L L++ ++ + VAK++++S D+ S R RT+ RQVAMYL Sbjct: 445 TLAEAETYLKDLLSDTGGAEITSALVLATVAKYFDVSIEDMQSKSRTRTLTNARQVAMYL 504 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P IG G RDHTTV+HAVRKV + T+ +V L LI + Sbjct: 505 LRELTEMSLPRIGNDLGGRDHTTVMHAVRKVSAQMAERQTIFNQVTELTNLIRQ 558 >gi|329957669|ref|ZP_08298144.1| replication initiator protein DnaA [Bacteroides clarus YIT 12056] gi|328522546|gb|EGF49655.1| replication initiator protein DnaA [Bacteroides clarus YIT 12056] Length = 464 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 123/473 (26%), Positives = 234/473 (49%), Gaps = 15/473 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + ++ +++ V Y +WF + + + VP+ F ++++++++ Sbjct: 3 EQDHVGLWNRCLEIIRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDKFVD 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + K + + V EKT + S + I Q Sbjct: 63 LLRKTLYKVIGEGTKLMYNVMVDKSSRPEKTVNYESTHRTIIPQKQTIDKAI---PQIPV 119 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P L+ + F TFIEG SN+++ + A+++A + NPLF++ + G+GKTH Sbjct: 120 PDLDPHLNPEYNFDTFIEGYSNKLSRSVAEAVALNPAK----TIFNPLFLYGASGVGKTH 175 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L AI + P RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q Sbjct: 176 LANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEF 235 Query: 272 QG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E Sbjct: 236 AGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELEKPTVE 295 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 +R +IL+N + L EV+ ++A V S R+L+G ++ + + + Sbjct: 296 LRKNILRN-----KIHRDGLQFPPEVIDYIAENVGNSVRDLEGIVISIMAHSTIYNKEID 350 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A ++ +VN+ E+K + I+DI V KH+ + + + R R VV+ RQ+AMYL+ Sbjct: 351 LELAQRIVRKVVNS-ESKAITIDDIITTVCKHFGLENAAIHTKSRKREVVQARQIAMYLA 409 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K T S +IG G++DH TVLHA + ++++ E D + + E++ ++ + + Sbjct: 410 KNHTDFSTAKIGTLIGNKDHATVLHACKTIKQLKEVDKSFRAEIKEIQTALKK 462 >gi|315654389|ref|ZP_07907297.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 51333] gi|315491424|gb|EFU81041.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 51333] Length = 483 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 138/470 (29%), Positives = 226/470 (48%), Gaps = 15/470 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYA-SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + L + + ++ K + L+V +N +K I+++Y Sbjct: 13 DLGPTDFWAKALENLSVSGKIGSFDLALIRQSKGLGESGDAAVLAVSSNDVKTMIESKYS 72 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI--ILGKQ 148 + F E R I+ L ++ + P + +P+ +Q Sbjct: 73 DLFKTTFSEVLHRPINNLIVTVDENLGNMAPAPQTFEPVPPQPAPPIVPATPVWEPEHQQ 132 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T+ + L+ + F +F+ GSSN AA+S+ + Y NPLFI+ GLG Sbjct: 133 TLHIDSSTGLNPTYTFDSFVIGSSNSFTAAAAESVVASPAKAY-----NPLFIYGGPGLG 187 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N +++ P+ +V Y+++E F F +AI + R +D LLIDD+ Sbjct: 188 KTHLLHAIGNYALELYPDSKVKYISSEEFTNEFINAIASQTFAEFQARYREVDFLLIDDI 247 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK EF H N+L + KQVV +D P EL+ + R+RSRL+ G+ + Sbjct: 248 QFLAGKEQTLEEFFHTFNTLHTAQKQVVITSDVAPKELKGFEERVRSRLEWGLMADIQPP 307 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 E R +IL+ + + + + ++V +A V + R L+GA ++ S + Sbjct: 308 SLETRIAILRR-----KAQAGNMQMPDDVAEFIASNVDSDIRALEGALIRVTAYWSLNHV 362 Query: 388 L-TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 T E A + L+ K++ E I A++++++ DLLS R RTVV PRQ+AM Sbjct: 363 PATIETAKLAIRDLMTGKGAKEITPEMIIDCTAQYFSLTSEDLLSANRSRTVVGPRQIAM 422 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 YL + +T S P++G FG RDHTTV+HA +KV ++ D K V + Sbjct: 423 YLCRELTDLSLPQVGAAFGGRDHTTVMHANKKVAASMKEDTQTFKSVSDI 472 >gi|299065055|emb|CBJ36216.1| chromosomal replication initiator protein DnaA, DNA-binding transcriptional dual regulator [Ralstonia solanacearum CMR15] Length = 539 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 125/393 (31%), Positives = 204/393 (51%), Gaps = 13/393 (3%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 + + + E + S + + + S + S L+ F + G Sbjct: 157 IDMPVMDAAEASTQSYRVPAPAAPSVMAGLSAPPAAPVDDTVHERSRLNPILTFDNLVTG 216 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 +N++A AA +A Y NPL+++ VGLGKTHL+ AI N + P R+ Sbjct: 217 KANQLARAAAVQVANNPGKSY-----NPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIR 271 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 Y+ AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ Sbjct: 272 YIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIA 331 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + Sbjct: 332 NRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MKKAQAEN 386 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 + + EEV VA+ + ++ REL+GA +++ +F +T E+ E L L+ T + ++ Sbjct: 387 VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDLL-TVQNRQ 445 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RD Sbjct: 446 ISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRD 505 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHAVRK+ D L E+ +L++ + Sbjct: 506 HTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 538 >gi|187927113|ref|YP_001897600.1| chromosomal replication initiation protein [Ralstonia pickettii 12J] gi|309780182|ref|ZP_07674933.1| bacterial DnaA protein helix-turn-helix domain protein [Ralstonia sp. 5_7_47FAA] gi|226735836|sp|B2UCF1|DNAA_RALPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|187724003|gb|ACD25168.1| chromosomal replication initiator protein DnaA [Ralstonia pickettii 12J] gi|308920885|gb|EFP66531.1| bacterial DnaA protein helix-turn-helix domain protein [Ralstonia sp. 5_7_47FAA] Length = 529 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 129/393 (32%), Positives = 207/393 (52%), Gaps = 14/393 (3%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEG 170 + + + E +A S + +P +P S S L+ F F+ G Sbjct: 148 IDVPVMDAAEVSARSYRMPPQAPAVVATLAAP-PQAHVDDSVHERSRLNQILTFDNFVTG 206 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 +N++A AA +A Y NPL+++ VGLGKTHL+ AI N + P R+ Sbjct: 207 KANQLARAAAIQVANNPGKSY-----NPLYLYGGVGLGKTHLIHAIGNFMLMENPRARIR 261 Query: 231 YLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLD 289 Y+ AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ Sbjct: 262 YIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKNRTQEEFFYAFEALIA 321 Query: 290 SAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPK 349 + QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + Sbjct: 322 NRAQVIITSDTYPKEITGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MKKAQAEN 376 Query: 350 LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKK 408 + + EEV VA+ + ++ REL+GA +++ +F +T E+ E L L+ T + ++ Sbjct: 377 VTVPEEVAFFVAKHLRSNVRELEGALRKILAYSNFHGKEITIEVTREALKDLL-TVQNRQ 435 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + +E+IQ+ A YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RD Sbjct: 436 ISVENIQKTCADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRD 495 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTVLHAVRK+ D L E+ +L++ + Sbjct: 496 HTTVLHAVRKIADERTKDAQLNHELHVLEQTLK 528 >gi|306828596|ref|ZP_07461790.1| DNA-directed DNA replication initiator protein [Streptococcus mitis ATCC 6249] gi|304429204|gb|EFM32290.1| DNA-directed DNA replication initiator protein [Streptococcus mitis ATCC 6249] Length = 453 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 143/474 (30%), Positives = 230/474 (48%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + V N + +P + ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYATPAELIKVEENTATIFLP----RTEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + +S S T S P I P Sbjct: 57 LKDIIVAAGFEIYDSEIKPHYIFTKPQSTESSQVSDTTDSSTYNYTPALPTI-------P 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E + + L ++A ++ REL+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + IE IQ V Y +S ++ RRV+ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDARQMLVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ EVE +K+ I Sbjct: 400 LARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEVESIKKKIK 453 >gi|307717718|ref|YP_003873250.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6192] gi|306531443|gb|ADN00977.1| chromosomal replication initiator protein DnaA [Spirochaeta thermophila DSM 6192] Length = 452 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 240/471 (50%), Gaps = 29/471 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ++ + L+ + + WF + ++ + + VP++F++ IK RY I Sbjct: 6 DYSIVWKETLNLLRGVLTEQEFRLWFFEVDYYDGSEETLRIRVPSSFVRDQIKQRYQRLI 65 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F E R ++ +V +L A ++ SP + P Sbjct: 66 EDKFYELLGRKLLLDFVVEKRSL------AQERPVSSSSPQREIPKERPPHP-------- 111 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L + F F+ G A + A + NP I+ VGLGKTHLL Sbjct: 112 ---QLRRDYTFENFVIGE-----NNAFAANAALAIAKNPGTAYNPCLIYGGVGLGKTHLL 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 Q+I N+ NL+VVY+TAE F F ++I++ K RN+D+LLIDD+ F Sbjct: 164 QSIGNSVYGEFHNLKVVYVTAEEFTNEFIASIQNKETHKFKTKYRNVDVLLIDDIHFFMN 223 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q E H N+L D+ KQ+V DRP SEL+++ R+RSR + G++V L +E R Sbjct: 224 KTETQEELFHTFNALYDANKQMVFTCDRPVSELKNISHRLRSRFERGLNVDLQPPSFETR 283 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 ++ILK + E ++I +EV+ +A VTT+ R+L+ A +L+ +T + Sbjct: 284 YAILKK-----KIEQKTVHIPDEVITFIAEHVTTNVRDLEAALTKLIAYAELVHRDITID 338 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 IA L + T + + I+ IQ++VA ++ I+++DL + +R RTVV PRQ+AMY+++ Sbjct: 339 IAKSQLKDMFTTTKQTNITIDLIQKVVADYFGITQSDLRNKKRTRTVVFPRQIAMYIARE 398 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S EIG FG RDHTTV++A++K+E + TD TL + L R + E Sbjct: 399 LTEYSTTEIGEYFGGRDHTTVMYAIQKIESKMRTDPTLDTIIAQLIREVQE 449 >gi|254503894|ref|ZP_05116045.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] gi|222439965|gb|EEE46644.1| chromosomal replication initiator protein DnaA [Labrenzia alexandrii DFL-11] Length = 479 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 190/480 (39%), Positives = 285/480 (59%), Gaps = 25/480 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V + LKN++G D++++WF R+K + V LSVPT FLK WI + Y + + L+Q Sbjct: 5 WDRVKAELKNELGEDIFSNWFGRVKHEETNGDAVRLSVPTPFLKNWILSNYEKQLVNLWQ 64 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSIT------KLSPINTNISKSPIIL------- 145 +H I VE+ VR P + + I + +P TN + Sbjct: 65 RQHDDISRVELTVRGALRPRPAGSQAPKPIKARRISGRAAPFATNPQFGSVNTVASIPCL 124 Query: 146 ----GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + G+ L+ + F TF EG+SN +A A + +A L L+I Sbjct: 125 ADTGEDAAADFLNGAALNPKLTFDTFAEGTSNSLACAAVRQMA-----AGHDGSLGLLYI 179 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 H+S G+GKTHLLQA A + R+ RV YL+AE+FM+ A+R L+ ++++ID Sbjct: 180 HSSTGIGKTHLLQAAATEA--RKGGRRVAYLSAEFFMYHLVPALRTPAYPVLRQAMKSID 237 Query: 262 LLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLLIDD+QFL GK EF L L++S +++ AADR P E+ +L +R R+Q G Sbjct: 238 LLLIDDLQFLHGKQGHEEFGKTLEMLMESPMKIIMAADRAPDEMSTLGSTVRQRIQTGEV 297 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + DY +R ILK R+ +++ P + +EV+ ++AR V +S R+L+GA N+L Sbjct: 298 VTIQATDYALRHDILKKRIFSARRTHPGFTVPDEVIDYIARYVISSARDLEGALNRLFAH 357 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + +T ++A++ L LV GE + +++EDIQ +V KH+++++ DLLS+ R RT+VR Sbjct: 358 NQLTKQPVTMQLAEKTLHDLVRIGEPRSIKVEDIQNVVCKHFSVTKADLLSSCRARTLVR 417 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQ+AMY++K+MT RS PEIGRRFG+RDHTTVLHAVRK+E M+ D L +EVELLKRL+ Sbjct: 418 PRQIAMYIAKVMTGRSLPEIGRRFGNRDHTTVLHAVRKIESMVAGDAALAQEVELLKRLV 477 >gi|189218018|ref|YP_001938660.1| Chromosomal replication initiator protein dnaA, ATPase [Methylacidiphilum infernorum V4] gi|254777907|sp|B3DWG6|DNAA_METI4 RecName: Full=Chromosomal replication initiator protein DnaA gi|189184876|gb|ACD82061.1| Chromosomal replication initiator protein dnaA, ATPase [Methylacidiphilum infernorum V4] Length = 454 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 146/475 (30%), Positives = 248/475 (52%), Gaps = 31/475 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 L+ + I+ + L+ + + WF ++ S+ ++ + L P + WI+ YL Sbjct: 4 LKTDLNLIWNDICLELQKVISKEAIEKWFVPIELLSIENDQLLLKAPDPIYQYWIEENYL 63 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + IL ++ + +++ + I + L ++ Sbjct: 64 SQLIGA---------SFRILAKNPKIIFAQESPGNGEKATGKKIKS--------LPREDK 106 Query: 151 SPVFGS-PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S +F S L+++F F F+ G ++ A AA+++AE + Y NPLF++ VGLGK Sbjct: 107 SSIFESKGLNTKFSFENFVVGPNSEFAAAAAKAVAESPAKAY-----NPLFLYGKVGLGK 161 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI N +++ + V Y+T+E F F AI+ + R ID+LLIDD+Q Sbjct: 162 THLMQAIGNHIVEKNKWILVQYVTSEQFTNEFIEAIQKGSIGQFRKKYRQIDVLLIDDIQ 221 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK Q EF H N L D +KQ+V + D PS L++L+ R+ SR + G++ + Sbjct: 222 FLAGKERSQEEFFHTFNCLFDGSKQIVLSGDEAPSSLQNLEKRLISRFEWGLTAEILPPG 281 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E+R +ILK++L + L+I+E++L +A + T+ R+L+GA N+L S Sbjct: 282 IEVRLAILKHKLK-----NYSLSIDEKILEFIAERIKTNVRQLEGALNRLCAYASIHKEG 336 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E LL L++ +K + IE IQ+ V + Y+I +D++S RR+ + PR VAM Sbjct: 337 KITLEETQSLLKDLISLQPSKTITIEMIQKRVCEAYDIRFSDMVSKRRISAIALPRMVAM 396 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL++ +T S +IG FG RDH TVLHA R + + + D L + ++ + ++ Sbjct: 397 YLARRLTNLSLSQIGENFGGRDHGTVLHAQRTISEKMSKDPDLAQLIKKITEQLT 451 >gi|87198027|ref|YP_495284.1| chromosomal replication initiator protein DnaA [Novosphingobium aromaticivorans DSM 12444] gi|87133708|gb|ABD24450.1| chromosomal replication initiator protein DnaA [Novosphingobium aromaticivorans DSM 12444] Length = 498 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 165/507 (32%), Positives = 277/507 (54%), Gaps = 27/507 (5%) Query: 4 REVAACIQENDVEIAE----KTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWF 59 R V + + N+ D+ L++ + + +S LK +GP ++A W Sbjct: 11 RGVNSAANSGGERAQAGKKGRESNMIEDQEALDLAAD--WADISQGLKKDLGPQLHAQWI 68 Query: 60 QRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 + ++ S + L +PT F W+ +R+ + ++ ++ S ++ V I V Sbjct: 69 KPIQLGSFCKETGTLDLFLPTEFSANWVADRFADRLSLAWKIARSEVRQVRITVHPRRRS 128 Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 E + + T S T + SP+++ S LD F+ F+ GS+N +A+ Sbjct: 129 MPELRVGA-APTAPSRAATLAATSPVMVDSAL------SGLDPSLTFAEFVSGSANVLAV 181 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 AAQ +A +++ + +PL++ S G GKTHLL AI +A +P R+ Y +AE F Sbjct: 182 NAAQRMAAIEAP-----QFSPLYLKGSTGQGKTHLLHAIGHAFAANKPGARIFYCSAERF 236 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVA 296 M F A+R N + K LR D+LL+DD+QF+ GK Q EF H +++L+ + K++V Sbjct: 237 MIEFVQAMRSNEMIEFKSRLRGFDMLLVDDIQFIIGKASTQEEFLHTIDALMSAGKRLVV 296 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 AADR P L+ ++ R+ SRL G+ + D E+R IL++RLA + +V Sbjct: 297 AADRAPQALDGVEQRLLSRLSMGLVADIQPADIELRRKILEHRLARFGNTQ----VPSDV 352 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQ 415 + +ART+ + REL G N+L+ ++ ++A+E L+ ++ + +++ I++IQ Sbjct: 353 VEFLARTINRNVRELVGGLNKLIAYAQLTGQPVSLQLAEEQLTDIL-SANRRRITIDEIQ 411 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 R V + Y + R ++ S RR R VVRPRQVAMYL+K++TPRS+PEIGR+FG RDH+TV+HA Sbjct: 412 RTVCQFYRVDRTEMASKRRARAVVRPRQVAMYLAKVLTPRSYPEIGRKFGGRDHSTVIHA 471 Query: 476 VRKVEKMLETDITLKKEVELLKRLISE 502 VR +E++ D + +V L R + + Sbjct: 472 VRLIEELRARDADMDGDVRTLLRQLED 498 >gi|29840131|ref|NP_829237.1| chromosomal replication initiation protein [Chlamydophila caviae GPIC] gi|33301062|sp|Q823P0|DNAA1_CHLCV RecName: Full=Chromosomal replication initiator protein DnaA 1 gi|29834479|gb|AAP05115.1| chromosomal replication initiator protein DnaA [Chlamydophila caviae GPIC] Length = 450 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 140/466 (30%), Positives = 231/466 (49%), Gaps = 27/466 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + + +K + + +W ++ + L VP F++ ++ + Y + + Sbjct: 8 STWEQFVNYVKTRCSKTAFENWISPIQIIEETQEKIRLEVPNIFVQNYLLDNYKQDLCSF 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +E +V + + A P + SP T S F Sbjct: 68 VPLDAQGEPALEFVVAEIKKAPAQPIA--PREPQESPAETFEE-----------SKDFEL 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L++ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ Sbjct: 115 KLNAAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSY-----NPLFIHGGVGLGKTHLLHAV 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + NLRV +T E F+ +R +K+ R++DLLL+DD+QFLQ + Sbjct: 170 GHYVREHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLDLLLVDDIQFLQNRQN 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + EFC+ +L++ KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +I Sbjct: 230 FEEEFCNTFETLINLNKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETRVAI 288 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 L++ + E L+I E+ ++A + + R+L+GA N+L F LT I Sbjct: 289 LQH-----KAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTESIVR 343 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L + +K+ +E I + VA + + DL R + +V RQVAMYL+K + Sbjct: 344 DTLRELFRSPSKQKVSVESILKSVATVFQVKLQDLKGTSRSKELVLARQVAMYLAKTLIT 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG + H+TVL+A + +E+ +E D TL +++ L K I Sbjct: 404 DSLVAIGSAFG-KTHSTVLYACKTIEQKIEKDETLTRQISLCKNHI 448 >gi|172039681|ref|YP_001799395.1| chromosomal replication initiation protein [Corynebacterium urealyticum DSM 7109] gi|171850985|emb|CAQ03961.1| chromosomal replication initiator protein [Corynebacterium urealyticum DSM 7109] Length = 586 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 123/380 (32%), Positives = 207/380 (54%), Gaps = 12/380 (3%) Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 + + P + + S SP + + L+ ++ F +F+ G SN+ A A Sbjct: 211 QGVNQPESRNEAFVPAEASSSPTADTDEGDRDS-DTLLNKKYTFESFVIGGSNQFAHAAC 269 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 +++AE + Y NPLFI GLGKTHLL AI + + + QP++RV Y+++E Sbjct: 270 RAVAEAPARAY-----NPLFIWGESGLGKTHLLHAIGHYAKELQPDMRVRYVSSEELTND 324 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAAD 299 F ++I ++ K RN+D+L++DD+QFLQGK Q EF H N+L + KQ+V ++D Sbjct: 325 FINSIANDRREEFKREYRNLDMLIVDDIQFLQGKESTQEEFFHTFNALHQANKQIVLSSD 384 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 RPP +L +L+ R+R+R +GG+ + D E R +IL + A + E+VL Sbjct: 385 RPPRQLTTLEDRLRTRFEGGLITDVQTPDLETRMAILSRKAAAEGT-----TLPEDVLEL 439 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 +A TS REL+GA ++ S + A E+ + + +M + I +V+ Sbjct: 440 IASRYETSIRELEGALIRVTAYCSLGKEPITKQAAEIALRDIMPVDDVQMTPQVIIDVVS 499 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +++++ ++L+ R + V+ RQ+AMYL + +T S P++G+ FG RDHTTV+HA R++ Sbjct: 500 SYFDLTVDELVGKGRTKRFVQARQIAMYLCRELTDLSLPKLGQAFGGRDHTTVMHAERRI 559 Query: 480 EKMLETDITLKKEVELLKRL 499 + L D EV+ L + Sbjct: 560 REQLTEDRVTFNEVQELTQR 579 >gi|218960351|ref|YP_001740126.1| chromosomal replication initiation protein [Candidatus Cloacamonas acidaminovorans] gi|167729008|emb|CAO79919.1| chromosomal replication initiation protein [Candidatus Cloacamonas acidaminovorans] Length = 443 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 127/473 (26%), Positives = 226/473 (47%), Gaps = 38/473 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + I+ + +L+ + P + +WF + + + + V T F ++ Y E + + Sbjct: 3 QDIWQNILDKLEENINPQSFKTWFSDTRLVDMNDRELMIRVATQFSANYLNQNYKEVLGE 62 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + R V+ + + + EK SI ++S Sbjct: 63 ISYGLYGRKYDVQFITQPHRNHNKEKDVQDYSIKRVSA---------------------N 101 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+ R+ F F+ G +N A +AA+++AE + Y NPLFI+ G+GKTHL+QA Sbjct: 102 VRLNERYTFDEFVVGKNNNFAYSAAKAVAESPGYTY-----NPLFIYGESGMGKTHLMQA 156 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N +K N + Y+T+E F IR N + R +DLLL+DD+ FL K Sbjct: 157 IGNYILKEGRNCSIYYITSEAFTNEMIDGIRSNKMPEFRAKFRKVDLLLMDDIHFLSRKE 216 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V +DRPP ++ L+ R+ +R + G+ L D+E R + Sbjct: 217 GTQEEFFHTFNALFENKKQIVLTSDRPPKDIPDLEKRLVTRFESGLLCDLKSPDFETRVA 276 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTA 390 IL+ + E + +++ + +A +T+S R L+G+ +++ S+ + + Sbjct: 277 ILRK-----KAEPENVVLSDAIFNFIADNITSSVRALEGSLIRILAFSSYNKLNPEDIDI 331 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E+LS +++ + ++ I V + Y I+ LL R V PRQVAMYL+ Sbjct: 332 NLAAEILSDMISEK-VHSITLDAITEKVCECYGITPAQLLEKTRKPQVAFPRQVAMYLAN 390 Query: 451 IMT-PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + S +I + +DHTTVLHA + VE + ++E + + + + Sbjct: 391 YLIPQLSLKDIAEYYNRKDHTTVLHAKKMVENQFREKEDFRIQLEEIIKNLKK 443 >gi|16752614|ref|NP_444878.1| chromosomal replication initiation protein [Chlamydophila pneumoniae AR39] gi|7189257|gb|AAF38184.1| chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae AR39] Length = 467 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 139/464 (29%), Positives = 230/464 (49%), Gaps = 27/464 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + +K + + +W ++ + L VP F++ ++ + Y + Sbjct: 27 WEQFLNYVKTRCSKTAFENWISPIQVLEETQEKIRLEVPNIFVQNYLLDNYKRDLCSFVP 86 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + +E +V PS +P+ + + I + F L Sbjct: 87 LDVHGEPALEFVVAEHKKPS-------------APVASQKESNEGISEVFEETKDFELKL 133 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ + Sbjct: 134 NLSYRFDNFIEGPSNQFVKSAAVGIAGKPGRSY-----NPLFIHGGVGLGKTHLLHAVGH 188 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQ 277 + NLR+ +T E F+ ++ +K+ R++DLLL+DD+QFLQ + + Sbjct: 189 YVREHHKNLRIHCITTEAFINDLVYHLKSKSVDKMKNFYRSLDLLLVDDIQFLQNRQNFE 248 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EFC+ +L++ +KQ+V +D+PPS+L+ L RI +R++ G+ +G+ D E R +IL+ Sbjct: 249 EEFCNTFETLINLSKQIVITSDKPPSQLK-LSERIIARMEWGLVAHVGIPDLETRVAILQ 307 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADEL 396 + + E L I E+ ++A + + R+L+GA N+L F LT E Sbjct: 308 H-----KAEQKGLLIPNEMAFYIADHIYGNVRQLEGAINKLTAYCRLFGKSLTETTVRET 362 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L + +K+ +E I + VA + + NDL N R + +V RQ+AMYL+K + S Sbjct: 363 LKELFRSPTKQKISVETILKSVATVFQVKLNDLKGNSRSKDLVLARQIAMYLAKTLITDS 422 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IG FG + H+TVL+A + +E L+ D TLK++V L K I Sbjct: 423 LVAIGAAFG-KTHSTVLYACKTIEHKLQNDETLKRQVNLCKNHI 465 >gi|224372071|ref|YP_002606443.1| chromosomal replication initiator protein DnaA [Nautilia profundicola AmH] gi|254777909|sp|B9L735|DNAA_NAUPA RecName: Full=Chromosomal replication initiator protein DnaA gi|223588880|gb|ACM92616.1| chromosomal replication initiator protein DnaA [Nautilia profundicola AmH] Length = 436 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 238/470 (50%), Gaps = 45/470 (9%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETIT 94 SIFT + LK++ Y + + L+F HL P F+ ++K +YL I+ Sbjct: 2 SIFTKIKKSLKSE-NLVNYNKFIKNLEFDEKNSTSTHLIIKAPNIFIANFVKRKYLNKIS 60 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +L+++E ++I+ + + S P+ + ++ I P Sbjct: 61 ELYEKETGIKPKIDIVTKEI------------------------SHRPLTI-EEIIEPTT 95 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L + F +FI G SN+ A TAA+S+AE Y NPLFI+ VGLGKTHLLQ Sbjct: 96 PSVLIPEYTFESFIVGPSNQFAYTAAKSVAENPGKNY-----NPLFIYGGVGLGKTHLLQ 150 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N +L V+Y+T+E FM F IR + RN D+LLIDD+QF GK Sbjct: 151 AIGNYLKS---SLNVLYVTSEQFMNEFTENIRMKTPERFHEKYRNCDVLLIDDVQFFAGK 207 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N L + KQ+ ADRPP +L L R+RSR + G+ V + + E + Sbjct: 208 ERTQEEFFHTFNELYNQKKQICLTADRPPKKLYDLVDRLRSRFEAGLIVDIQPPELETKI 267 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAE 391 I++ + E + + EE++ ++A + ++ RE++G ++ I +T + Sbjct: 268 EIIRKKC-----ELNGIYLPEEIIEYIATKLDSNIREIEGMITKINAMSKILGISEITLD 322 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A + L + + + +EDI +++AK +NI ++++S R + +V R+ A+YL++ Sbjct: 323 FAKQALKEHIKDK-KEVITLEDIIKLIAKEFNIKPSEIVSKSRNKNIVAARRCAIYLARE 381 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P I + FG RDH+ V HA++ K L+ D + ++E LK I Sbjct: 382 FTKESTPIIAKYFGLRDHSAVSHAIKSFNKKLKEDSEFRIKIEELKNKIQ 431 >gi|83719949|ref|YP_443733.1| chromosomal replication initiation protein [Burkholderia thailandensis E264] gi|123726547|sp|Q2STL6|DNAA_BURTA RecName: Full=Chromosomal replication initiator protein DnaA gi|83653774|gb|ABC37837.1| chromosomal replication initiator protein DnaA [Burkholderia thailandensis E264] Length = 536 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 166 PSLTAHEAAAGRRTWRPGAASANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 225 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 226 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 280 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 281 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 340 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 341 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 395 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 396 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 454 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 455 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 514 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 515 DERGKDAQLNHELHVLEQTLK 535 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRS 113 + L ++ + V+ ++ Sbjct: 62 SDLARDFWNAPIEVQFVLDP 81 >gi|254773054|ref|ZP_05214570.1| chromosomal replication initiation protein [Mycobacterium avium subsp. avium ATCC 25291] Length = 509 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 134/509 (26%), Positives = 240/509 (47%), Gaps = 57/509 (11%) Query: 37 SIFTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 +++ V S L + + P +W ++ +++ LSVP++F Sbjct: 11 TVWNAVVSELNGEPVADGGAANRTTLVTPLTPQQ-RAWLNLVRPLTIVEGFALLSVPSSF 69 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 ++ I+ IT + +++ VR P + A P + +S Sbjct: 70 VQNEIERHLRAPITDALSRRLGQ--QIQLGVRIAPPPDDVEDALIPPAEPFPDTDAALSA 127 Query: 141 SPIILGKQTISP-------------------------VFGSPLDSRFVFSTFIEGSSNRV 175 G+ + G+ L+ R+ F TF+ G+SNR Sbjct: 128 DDGADGEPVENGEPVTDTQPGWPNYFTERPHAIDPAVAAGTSLNRRYTFDTFVIGASNRF 187 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A + NPLFI GLGKTHLL A N + + P +RV Y++ E Sbjct: 188 -----AHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTE 242 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQV 294 F F +++RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+ Sbjct: 243 EFTNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQI 302 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L + + Sbjct: 303 VISSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPD 357 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIED 413 +VL +A ++ + REL+GA ++ S + +A+ +L L+ T ++ Sbjct: 358 DVLELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLIADASTMQISAAT 417 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I A++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV+ Sbjct: 418 IMAATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVM 476 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLISE 502 +A RK+ + + V+ L I + Sbjct: 477 YAQRKILSEMAERREVFDHVKELTTRIRQ 505 >gi|331265439|ref|YP_004325069.1| chromosomal replication initiator protein [Streptococcus oralis Uo5] gi|326682111|emb|CBY99727.1| chromosomal replication initiator protein [Streptococcus oralis Uo5] Length = 453 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 142/475 (29%), Positives = 233/475 (49%), Gaps = 28/475 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + V N + +P + ++ + + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYATPAELIKVEENTATIFLPRSEMEMVWEKQLKDI 60 Query: 93 ITKL-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I F+ S I+ I + + S + +TN + Sbjct: 61 IVAAGFEIYDSEIKPHYIFTKPQSTESPQVN------------DTNSVSTYDYTPALPTI 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + IE IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDARQMLVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ EVE +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEVESIKKKIK 453 >gi|116668569|ref|YP_829502.1| chromosomal replication initiator protein DnaA [Arthrobacter sp. FB24] gi|116608678|gb|ABK01402.1| chromosomal replication initiator protein DnaA [Arthrobacter sp. FB24] Length = 474 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 135/484 (27%), Positives = 234/484 (48%), Gaps = 21/484 (4%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKN--QVGPDVYASWFQRL-KFHSVLHNIVHLSVPTNF 80 + VD+ S + V S L+ +V P F L + ++ + + ++VP Sbjct: 2 MTVDEANHANTVGSSWRRVVSLLEQDHRVSPRQ--RGFVILAQAQGLIGSTLLVAVPNEL 59 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 + ++ + E + S I V + +P + + ++ + + Sbjct: 60 TREVLQTQVKEALDDALHNVFSDDIRCAIDVDTDLVPVHTEPEPAVELSLATDPTVELKP 119 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 P++ L+ ++VF TF+ GSSNR A V NPLF Sbjct: 120 QPMLPSTSHEF----GRLNPKYVFDTFVIGSSNRF-----AHAAAVAVAEAPAKAYNPLF 170 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ GLGKTHLL AI + + + +RV Y+ +E F F ++IRD+ + K + RN+ Sbjct: 171 IYGDSGLGKTHLLHAIGHYARRLYSGIRVRYVNSEEFTNDFINSIRDDEGTSFKTTYRNV 230 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LLIDD+QFL GK EF H N+L ++ KQVV +D+PP L + R++SR + G Sbjct: 231 DVLLIDDIQFLAGKDRTLEEFFHTFNALHNNNKQVVITSDQPPKLLAGFEDRMKSRFEWG 290 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + + + E R +IL+ + L+ ++ L ++A ++++ REL+GA ++ Sbjct: 291 LLTDIQPPELETRIAILRK-----KALSEGLSAPDDALEYIASKISSNIRELEGALIRVT 345 Query: 380 FRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 S + +A+ +L L+ +++ I A ++ +S +L S R RT+ Sbjct: 346 AFASLNRQPVDVALAEMVLKDLITDDGAQEITSAQILTQTADYFKLSMEELCSKSRTRTL 405 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ + +V L Sbjct: 406 VTARQIAMYLCRELTDMSLPKIGQELGGRDHTTVIHADRKIRELMAERRVIYNQVTELTN 465 Query: 499 LISE 502 I + Sbjct: 466 RIKQ 469 >gi|255534685|ref|YP_003095056.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae bacterium 3519-10] gi|255340881|gb|ACU06994.1| Chromosomal replication initiator protein dnaA [Flavobacteriaceae bacterium 3519-10] Length = 488 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 129/498 (25%), Positives = 234/498 (46%), Gaps = 32/498 (6%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVG-----------PDVYASWFQRLKFHSVLHNIVHLS 75 + + N I+ +++ + + + F ++ S++ N + L Sbjct: 1 MENTMNENLPLIWERCLQFMRDNLSAAEDHTDLKKLENSFDLLFDNVRPVSLVSNNLTLL 60 Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN 135 VP++F K +I++ YL ++ ++ + + V E + K Sbjct: 61 VPSDFYKEYIEDNYLSLLSAALKKNIGKGVKLWYQVMENKPAGQEAPITMNMKGKSIATP 120 Query: 136 TNISKSPIILGKQTISP---------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 P I+P S L + F F ++EG SN+ A T A+SIA+ Sbjct: 121 KMQETLPPSFSSNLINPFVVPGMKKINIDSNLKADFSFDNYVEGESNKFASTVARSIAKR 180 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 NPLF++ G+GKTHL A+ P+ V+YL++E F+ +F SA + Sbjct: 181 PG----ATAFNPLFLYGGYGVGKTHLGHAVGLEVKNSYPDKVVLYLSSEKFIQQFVSAAK 236 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + + + +D+L+IDD+QFL GK Q F H+ + L + KQ++ +D+ P ++ Sbjct: 237 AHKQTEFANFYQMVDVLIIDDIQFLSGKKSTQDSFFHIFDYLHQNGKQIILTSDKAPVDI 296 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 + RI SR + G+S + D++ R I+ + + + + E++L +A V Sbjct: 297 LDIQDRIVSRFKWGLSAEIKSPDFDTRRKII-----VDKLSRDGIVLTEDMLDFLASEVK 351 Query: 366 TSGRELDGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 T+ REL G N ++ + + L+ E+ E + + + + K + I IQ +V +++ I Sbjct: 352 TNVRELIGVINSVIAYSTVYKSELSLELLKETI-NKIAANQKKVINIPYIQEVVCEYFGI 410 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 R LLS R R + PRQ+AMY +K T +F +IG G +DH+TV++A ++ + + Sbjct: 411 EREQLLSKTRKREIALPRQLAMYFAKEFTNATFTKIGEEMGGKDHSTVMYACDTIKDVSK 470 Query: 485 TDITLKKEVELLKRLISE 502 D LKK V+ L I + Sbjct: 471 IDKELKKYVKELTEKIKQ 488 >gi|293364516|ref|ZP_06611241.1| DNA-directed DNA replication initiator protein [Streptococcus oralis ATCC 35037] gi|307702806|ref|ZP_07639756.1| chromosomal replication initiator protein DnaA [Streptococcus oralis ATCC 35037] gi|291317024|gb|EFE57452.1| DNA-directed DNA replication initiator protein [Streptococcus oralis ATCC 35037] gi|307623662|gb|EFO02649.1| chromosomal replication initiator protein DnaA [Streptococcus oralis ATCC 35037] Length = 453 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 230/475 (48%), Gaps = 28/475 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP-TNFLKAWIKNRYLE 91 + + + + + ++ +Y + + V N + +P + W K Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYATPAELIKVEENTATIFLPRSEMEMVWEKQLKDI 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I F+ S I+ I + + S + +TN + Sbjct: 61 IIAAGFEIYDSEIKPHYIFTKPQSTESPQVN------------DTNSVSTYDYTPALPTI 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + IE IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDARQILVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIEAIKKKIK 453 >gi|317123178|ref|YP_004097290.1| chromosomal replication initiator protein DnaA [Intrasporangium calvum DSM 43043] gi|315587266|gb|ADU46563.1| chromosomal replication initiator protein DnaA [Intrasporangium calvum DSM 43043] Length = 579 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 118/363 (32%), Positives = 198/363 (54%), Gaps = 12/363 (3%) Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 P+ + + + L+ ++ F TF+ G+SNR A + NPLF+ Sbjct: 224 PLRQQRPEPAQASDTRLNPKYTFDTFVIGASNRFGHAA-----AIAVAEAPAKAYNPLFV 278 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + GLGKTHLL AI + + PN+RV Y+ +E F F ++IRD+ A + R++D Sbjct: 279 YGESGLGKTHLLHAIGHYARTMFPNVRVRYVNSEEFTNDFINSIRDDKASAFQSRYRSVD 338 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +LLIDD+QFLQGK Q EF H N+L ++ KQ+V +D PP EL + R+R+R + G+ Sbjct: 339 VLLIDDIQFLQGKLQTQEEFFHTFNTLHNANKQIVITSDLPPKELSGFEDRMRTRFESGL 398 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + D E R +IL+ + ++++ ++VL ++A +T+ REL+GA ++ Sbjct: 399 LTDVQPPDLETRIAILRK-----KAIQERMSVPDDVLEYIASNFSTNIRELEGALIRVTA 453 Query: 381 RHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + + +A+ +L ++ ++ I + + +Y ++ DL + R R +V Sbjct: 454 FSNLNRQAVDLPLAEVVLKDVLPNETPNQVTAATIMAVTSAYYAVTIEDLCGSSRSRHLV 513 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PRQ+AMYL + MT S P+IG+ FG RDHTTV+HA RK+ +++ + +V L Sbjct: 514 TPRQIAMYLCREMTDLSLPKIGQHFGGRDHTTVMHADRKIRELMSERRAIYNQVTELTNR 573 Query: 500 ISE 502 I + Sbjct: 574 IRQ 576 >gi|329942717|ref|ZP_08291496.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|332287313|ref|YP_004422214.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|313847897|emb|CBY16892.1| chromosomal replication initiator protein [Chlamydophila psittaci RD1] gi|325506504|gb|ADZ18142.1| chromosomal replication initiator protein [Chlamydophila psittaci 6BC] gi|328814977|gb|EGF84966.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci Cal10] gi|328914557|gb|AEB55390.1| chromosomal replication initiator protein DnaA [Chlamydophila psittaci 6BC] Length = 450 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 140/466 (30%), Positives = 232/466 (49%), Gaps = 27/466 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + + +K + + +W ++ + L VP F++ ++ + Y + + Sbjct: 8 STWEQFVNYVKTRCSKTAFENWISPIQIIEETQEKIRLEVPNIFVQNYLLDNYKQDLCSF 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +E +V + + A P + +P T S F Sbjct: 68 VPLDAQGEPALEFVVAEIKKAPPQPLA--PREQQETPTETFEE-----------SKDFEL 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L++ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ Sbjct: 115 KLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSY-----NPLFIHGGVGLGKTHLLHAV 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + NLRV +T E F+ +R +K+ R++DLLL+DD+QFLQ + Sbjct: 170 GHYVREHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLDLLLVDDIQFLQNRQN 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + EFC+ +L++ KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +I Sbjct: 230 FEEEFCNTFETLINLNKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETRVAI 288 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 L++ + E L+I E+ ++A + + R+L+GA N+L F LT I Sbjct: 289 LQH-----KAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTESIVR 343 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L + +K+ +E I + VA + + DL N R + +V RQVAMYL+K + Sbjct: 344 DTLKELFRSPSKQKVSVESILKSVATVFQVKLQDLKGNSRSKELVLARQVAMYLAKTLIT 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG + H+TVL+A + +E+ +E D TL +++ L K I Sbjct: 404 DSLVAIGSAFG-KTHSTVLYACKTIEQKIEKDETLTRQISLCKNHI 448 >gi|251771680|gb|EES52255.1| chromosomal replication initiator protein DnaA [Leptospirillum ferrodiazotrophum] Length = 450 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 147/475 (30%), Positives = 248/475 (52%), Gaps = 35/475 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH------SVLHNIVHLSVPTNFLKAWIKNRY 89 + ++ V + + S + ++ N + L VP F+ + R+ Sbjct: 2 QDLWNDVL----DHIDEREGTSVLEGVRDLYRECRLERTGNRLLLVVPNGFVSRLVSGRH 57 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 E+I + + ++ +E + S EK + P T P+ P++ + Sbjct: 58 QESIIEACKILTG-LEDLEFSISV----SEEKKSKKPRQTPKPPL-------PVLKESAS 105 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P + S L SR F T++ G SNR A AA ++E Y NP +I+ VGLGK Sbjct: 106 RDPSWESHLISRHTFDTYVVGESNRFAHAAAFQVSENPGKSY-----NPFYIYGGVGLGK 160 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ AI NA + + P+ R++YLT+E F+ SAIR + K+ R ID+L+IDD+Q Sbjct: 161 THLVNAIGNAILAKIPSSRILYLTSESFLNEMVSAIRFAKMIEFKERYRTIDVLIIDDIQ 220 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ K Q EF H NSL + KQ++ +D PP+E+ +L+ R+RSR G+ + + D Sbjct: 221 FISTKEKTQEEFFHTFNSLFEKGKQIILTSDCPPNEIATLEERLRSRFASGLIADIQIPD 280 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 +E + +IL I + + + + E+V+ +A ++ ++ REL+GA +L + Sbjct: 281 FETKVAIL-----IEKMKLEGIALPEDVIYFLATSIKSNIRELEGAMIRLGAYQTLMGKP 335 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E+ LLS+L+ + E I VA +Y +S ++ S +R R++ RQVA++ Sbjct: 336 VTMEVTRRLLSNLIQSAPAPVHT-ELIVNEVASYYKVSPKEIRSKKRNRSISVARQVAIF 394 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L + +T SFPEIGR G RDH+T ++A R VE+ ++D L +++E LKR + + Sbjct: 395 LLRDLTQMSFPEIGREMGGRDHSTAMYAFRSVEENRDSDAVLSRDIETLKRRLLQ 449 >gi|227529862|ref|ZP_03959911.1| DNA-directed DNA replication initiator protein [Lactobacillus vaginalis ATCC 49540] gi|227350231|gb|EEJ40522.1| DNA-directed DNA replication initiator protein [Lactobacillus vaginalis ATCC 49540] Length = 439 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 146/471 (30%), Positives = 245/471 (52%), Gaps = 36/471 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +S++ + + + + + K S+ N + + VPT + + + Sbjct: 2 TELDSLWEAIQNSFRQSKSQVTFDTLIAPAKPLSLSQNQLEVEVPTKVHRDFWEKN---- 57 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + EI V + ++ + Sbjct: 58 LKAELKQYAKAVTDQEIEPHFV-------------------LEGEFDPYQNDRPAESNNF 98 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +PL+ + F TF+ G N++A AA ++AE Y NPLFI+ VGLGKTHL Sbjct: 99 EMDTPLNPHYNFKTFVVGEGNKMAHAAAFAVAESPGGLY-----NPLFIYGGVGLGKTHL 153 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 ++AI N ++ P +V Y+T+E F F +I+ N ++ RN+DLLLIDD+QFL Sbjct: 154 MEAIGNHMLQLNPAAKVKYVTSEEFTNDFIHSIQSNSTEKFREEYRNLDLLLIDDIQFLA 213 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + N+L D+ KQ+V +DR P+E+ L R+ SR + G++V + D E Sbjct: 214 NKEGTQLEFFNTFNALHDNKKQIVMTSDRIPNEIPELQDRLVSRFRWGLTVEITPPDLET 273 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL+ S+ E+ +NI + L ++A + T+ REL+GA ++ + + +T Sbjct: 274 RIAILR-----SKVEEDHINIGNDTLNYIAGQIDTNIRELEGALTKVQAFSNLSQEPITP 328 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A + L L T +T I IQ+ VA+ YNI+++D++ +RV+ +V PRQ+AMYLS+ Sbjct: 329 HLASQALRGLQRTTKTTI-TITSIQKNVAEFYNITQSDIIGKKRVKQIVVPRQIAMYLSR 387 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG+ FG +DHTTVLHA+ K+E+ L TD L++++ LK + Sbjct: 388 ELTDYSLPKIGKEFGGKDHTTVLHAIDKIEEELRTDNELQEQLNTLKAKLK 438 >gi|308175815|ref|YP_003915221.1| chromosomal replication initiator protein DnaA [Arthrobacter arilaitensis Re117] gi|307743278|emb|CBT74250.1| chromosomal replication initiator protein DnaA [Arthrobacter arilaitensis Re117] Length = 478 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 130/471 (27%), Positives = 230/471 (48%), Gaps = 17/471 (3%) Query: 39 FTIVSSRLKNQVG-PDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + V ++++ Y ++ K ++ + ++VP + + ++ + E + + Sbjct: 13 WRQVIRKIEDDDRVKARYRAFVSLAKPQGLIGTTLLVAVPNDLTRDILQTQLREPLDEAL 72 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +E + V +E+ + + P +P S Sbjct: 73 REVFQDDIRCAVSVDLSLSDELEEDEQETKPAPPAAPAVVEAPGPRPQPAPQPTPPSNSQ 132 Query: 158 ----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ +++F TF+ GSSNR A V NPLFI+ GLGKTHLL Sbjct: 133 EFGRLNPKYIFDTFVIGSSNRF-----AHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLL 187 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + + +RV Y+ +E F F ++IRD+ + K + RN+D+LLIDD+QFL Sbjct: 188 HAIGHYARHLYKGIRVRYVNSEEFTNDFINSIRDDEGASFKQTYRNVDILLIDDIQFLAN 247 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L + KQVV +D PP +L+ + R+RSR + G+ + + E R Sbjct: 248 KDATQEEFFHTFNALHNHNKQVVITSDLPPKQLQGFEDRMRSRFEWGLLTDIQPPELETR 307 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAE 391 +IL+ + + L+ +V+ ++A ++T+ REL+GA ++ S + Sbjct: 308 IAILRK-----KADAENLSAPGDVMEYIASRISTNIRELEGALIRVTAFASLNNQPVDLA 362 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A+ +L L++ +++ I + A+++ +S ++L S R RT+V RQ+AMYL + Sbjct: 363 LAETVLKDLISEDGAQEITPSTIIKQTAEYFGLSIDELNSKSRTRTLVTARQIAMYLLRE 422 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S P+IG G RDHTTV+HA RK+ +++ + +V L I + Sbjct: 423 LTDMSLPKIGAELGGRDHTTVIHADRKIRELMAERRAIFNQVTELTNRIKQ 473 >gi|163838770|ref|YP_001623175.1| chromosomal replication initiator protein [Renibacterium salmoninarum ATCC 33209] gi|162952246|gb|ABY21761.1| chromosomal replication initiator protein [Renibacterium salmoninarum ATCC 33209] Length = 467 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 133/468 (28%), Positives = 228/468 (48%), Gaps = 22/468 (4%) Query: 39 FTIVSSRLKN--QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + V L+ V P + + ++ + + L+VP + ++N+ ++ Sbjct: 13 WRKVVKILEQDEHVSPRQ-RGFITLAQAQGLIGSTLLLAVPNELTREVLQNQIKGSLDLA 71 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 +E I + + P E+ ++ P + P T + Sbjct: 72 LREVFGEDVLCAISIDTDLTPVPEEV-----RQEVEPDEPSEESRPQPGPPSTSNEF--G 124 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ +++F TF+ G SNR A V NPLFI+ GLGKTHLL AI Sbjct: 125 RLNPKYLFDTFVIGQSNRF-----AHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAI 179 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + + +RV Y+ +E F F ++IR + + K + RN+D+LLIDD+QFL GK Sbjct: 180 GHYARRLYNGIRVRYVNSEEFTNEFINSIRYDEGTSFKTTYRNVDILLIDDIQFLSGKEA 239 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L + KQVV +D PP +L + R+RSR + G+ + + E R +I Sbjct: 240 TQEEFFHTFNALHNHNKQVVITSDLPPKQLSGFEERMRSRFEWGLLTDVQPPELETRIAI 299 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIAD 394 L+ + L+ ++VL ++A ++T+ REL+GA ++ S + + + Sbjct: 300 LRK-----KAIGEGLHAPDDVLEYIASKISTNIRELEGALIRVTAFASLNRQSVDVGLTE 354 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L L+ +++ I + ++ +S ++L S R RT+V RQ+AMYL + +T Sbjct: 355 TVLKDLITDNGDQQITAATILGQTSAYFKLSLDELRSKSRTRTLVNARQIAMYLCRELTD 414 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S P+IG+ G RDHTTV+HA RK+ +++ T+ +V L LI + Sbjct: 415 LSLPKIGQELGGRDHTTVIHADRKIRELMAERRTIFNQVTELTNLIRQ 462 >gi|149194732|ref|ZP_01871827.1| chromosomal replication initiation protein [Caminibacter mediatlanticus TB-2] gi|149135155|gb|EDM23636.1| chromosomal replication initiation protein [Caminibacter mediatlanticus TB-2] Length = 435 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 138/469 (29%), Positives = 232/469 (49%), Gaps = 45/469 (9%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETITK 95 IF + +LK++ Y + ++L+F N HL P F+ ++K Y + I + Sbjct: 2 IFDKIKQKLKSE-NQVNYNKFIKKLEFDEDSSNSNHLVIKAPNIFIANYVKRNYSKKIAE 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 +++EE +EI+ + + + E S + + Sbjct: 61 IYKEETGIEANLEIITKDIKHINYESENISTNTSP------------------------- 95 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L + F +FI G SN+ A +AA+S+AE Y NPLFI+ VGLGKTHL+QA Sbjct: 96 SILIPEYTFESFIVGPSNQFAYSAAKSVAENPGKNY-----NPLFIYGGVGLGKTHLIQA 150 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N R L V+Y+T+E FM F +R+ + R+ D+LLIDD+QF GK Sbjct: 151 IGNYLKNR---LNVIYVTSEQFMNEFRENVRNQTMDRFHEKYRSCDVLLIDDVQFFAGKE 207 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N L + KQ+ ADRPP +L+ L R+RSR + G+ + + E + Sbjct: 208 QTQEEFFHTFNELYNQKKQICLTADRPPKKLQDLVDRLRSRFEAGLIADIQPPELETKIE 267 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAEI 392 I+K + E + + ++V+ +A + + RE++G +L + +T + Sbjct: 268 IIKKKC-----ELNGIYLPDDVIEFIATKLDDNIREIEGMIVKLNAMAKLLGVSDITIDF 322 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L + + + ++DI ++AK +NI ++++S R + +V R+ A+YL++ Sbjct: 323 AKQTLKEHIKDK-KENITLQDIIELIAKEFNIKPSEIISKSRNKNIVAARRTAIYLAREF 381 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P I + FG +DH+ V HA++ K L+ D + ++E LK I Sbjct: 382 TKESTPAIAKYFGLKDHSAVSHAIKSFNKKLKEDNDFRIKIEELKNKIQ 430 >gi|315612159|ref|ZP_07887074.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis ATCC 49296] gi|315315720|gb|EFU63757.1| DNA-directed DNA replication initiator protein [Streptococcus sanguinis ATCC 49296] Length = 453 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 230/475 (48%), Gaps = 28/475 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP-TNFLKAWIKNRYLE 91 + + + + + ++ +Y + + V N + +P + W K Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYATPAELIKVEENTATIFLPRSEMEMVWEKQLKDI 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I F+ S I+ I + + S + +TN + Sbjct: 61 IIAAGFEIYDSEIKPHYIFTKPQSTESPQVN------------DTNSISTYDYTPALPTI 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + IE IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDARQILVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIEAIKKKIK 453 >gi|194323922|ref|ZP_03057697.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. novicida FTE] gi|194321819|gb|EDX19302.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. novicida FTE] Length = 463 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 148/472 (31%), Positives = 234/472 (49%), Gaps = 47/472 (9%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEIL--------------- 110 N+ + + K IK++Y I QE H +E Sbjct: 2 EQNSNLFTVYCNNEYFKKHIKSKYGNLILSTIQECHGNDLIIEYSNKKFSGKKITEVITA 61 Query: 111 -----------VRSVALPSVEKTASSPSITKLSPINTNISKSPI--------ILGKQTIS 151 V K P I+K S S + I K+ Sbjct: 62 GPQANFFSTTSVEIKDESEDTKVVQEPKISKKSNTKDFSSSQELFGFDEAMLITAKEDEE 121 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 FG PL ++VF +F+ G +N++A AA ++ + NPLFI+ GLGKTH Sbjct: 122 YSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIYGGSGLGKTH 176 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI N + + PN +++Y +E F+ + ++IR + R+ D+LLIDD+QF+ Sbjct: 177 LMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFI 236 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E Sbjct: 237 AGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLE 296 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILT 389 R +IL + + D + E +A V T+ REL+GA N+++ F T Sbjct: 297 TRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPT 351 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A L ++ KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L+ Sbjct: 352 IEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLA 410 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S PEIG FG RDHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 411 RELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTSISDDYELLLDKIS 462 >gi|107024098|ref|YP_622425.1| chromosomal replication initiation protein [Burkholderia cenocepacia AU 1054] gi|105894287|gb|ABF77452.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia AU 1054] Length = 561 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 209/390 (53%), Gaps = 17/390 (4%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + LPS+ ++ P + G + S S L+ F F+ G +N Sbjct: 186 IDLPSLPAHEAAAGRRTWRPGPGAAPAN----GGEADSMYERSKLNPVLTFDNFVTGKAN 241 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ Sbjct: 242 QLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIH 296 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + Sbjct: 297 AEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKA 356 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + +N+ Sbjct: 357 QVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVNL 411 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 +E+V VA+ + ++ REL+GA +++ F ++ E+ E L L+ T + +++ + Sbjct: 412 SEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDLL-TVQNRQISV 470 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTT Sbjct: 471 ENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTT 530 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHAVRK+ D L E+ +L++ + Sbjct: 531 VLHAVRKIADERSKDAQLNHELHVLEQTLK 560 Score = 75.1 bits (183), Expect = 2e-11, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 6/100 (6%) Query: 18 AEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS-- 75 A + + D + + S+ L+ ++ P Y +W + L + + LS Sbjct: 24 ASRAVHAKNDSYLMN----DFWQHCSALLERELTPQQYVTWIKPLAPVAFDASANTLSIA 79 Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA 115 P F W+K+++ I+ L +E + V+ ++ A Sbjct: 80 APNRFKLDWVKSQFSGRISDLAREFWNTPIEVQFVLDPKA 119 >gi|328676079|gb|AEB26949.1| Chromosomal replication initiator protein DnaA [Francisella cf. novicida Fx1] Length = 463 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 148/472 (31%), Positives = 234/472 (49%), Gaps = 47/472 (9%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEIL--------------- 110 N+ + + K IK++Y I QE H +E Sbjct: 2 EQNSNLFTVYCNNEYFKKHIKSKYGNLILSTIQECHGNDLIIEYSNKKFSGEKITEVITA 61 Query: 111 -----------VRSVALPSVEKTASSPSITKLSPINTNISKSPI--------ILGKQTIS 151 V K P I+K S S + I K+ Sbjct: 62 GPQANFFSTTSVEIKDESEDTKVVQEPKISKKSNTKDFSSSQELFGFDEAMLITAKEDEE 121 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 FG PL ++VF +F+ G +N++A AA ++ + NPLFI+ GLGKTH Sbjct: 122 YSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIYGGSGLGKTH 176 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI N + + PN +++Y +E F+ + ++IR + R+ D+LLIDD+QF+ Sbjct: 177 LMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFI 236 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E Sbjct: 237 AGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLE 296 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILT 389 R +IL + + D + E +A V T+ REL+GA N+++ F T Sbjct: 297 TRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPT 351 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A L ++ KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L+ Sbjct: 352 IEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLA 410 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S PEIG FG RDHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 411 RELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTSISDDYELLLDKIS 462 >gi|227502242|ref|ZP_03932291.1| chromosomal replication initiation protein [Corynebacterium accolens ATCC 49725] gi|227077066|gb|EEI15029.1| chromosomal replication initiation protein [Corynebacterium accolens ATCC 49725] Length = 382 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 124/382 (32%), Positives = 201/382 (52%), Gaps = 12/382 (3%) Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 T+ + + + + I P + L+ + F +F+ GSSNR A AA Sbjct: 6 TSQQDYNRQQPEFGGSANAARIPREAPAHDPNRETSLNPKHTFESFVIGSSNRFANGAAV 65 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 ++AE + Y NPLFI GLGKTHLL A N + P LRV Y+++E F + Sbjct: 66 AVAENPARAY-----NPLFIWGGSGLGKTHLLHAAGNYAQVLHPGLRVKYVSSEEFTNDY 120 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADR 300 +++RD+ + K RN+D+L++DD+QFL+GK Q EF H N+L + KQ++ ++DR Sbjct: 121 INSLRDDRQESFKRRYRNLDILMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDR 180 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PP +L +L+ R+R+R +GG+ + D E R +IL + A E ++ VL + Sbjct: 181 PPKQLTTLEDRLRTRFEGGLITDIQPPDLETRIAILMKKAAADGTE-----VDRSVLELI 235 Query: 361 ARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A +S REL+GA ++ S + E+A+ L L +++ I + A Sbjct: 236 ASRFESSIRELEGALIRVSAYSSLVNEPINVEMAEIALRDLAPDSADRQITAASIMEVTA 295 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 ++++I L + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A RK+ Sbjct: 296 EYFDIDVETLRGAGKKRAVAHARQLAMYLCRELTELSLPKIGEQFGGKDHTTVIYADRKI 355 Query: 480 EKMLETDITLKKEVELLKRLIS 501 K + E++ L + I Sbjct: 356 RKEMTEKRNTYDEIQSLTQRIK 377 >gi|71064582|ref|YP_263309.1| chromosomal replication initiator protein DnaA [Psychrobacter arcticus 273-4] gi|71037567|gb|AAZ17875.1| probable bacterial chromosomal replication initiator protein [Psychrobacter arcticus 273-4] Length = 481 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 140/491 (28%), Positives = 249/491 (50%), Gaps = 35/491 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +I+ + L+ V +V+ W + L H +N + + P ++ +IK +LE Sbjct: 2 IDTANIWDKCLNDLRYHVKDNVFTMWLRPLSAHQ-ENNSLIILAPNDYFVTYIKKNHLED 60 Query: 93 ITKLF-QEEHSRIQGVEILVRSVALPSVEKT-------------ASSPSITKLSPINTNI 138 I +L + I+ V + V + + + + SSP+ K I+ N Sbjct: 61 IQQLVTKHSQGSIEEVIVRVDNAGRDTDDGSSLQSGSLFAEDALPSSPADYKFETIHHNN 120 Query: 139 SKSPIILGKQTISPVFG------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 +K+ I + V S L+ F F TF+ G SN +A A + + Sbjct: 121 AKADIDANMRHAEMVDSADAKSLSYLNPDFTFETFVTGKSNNLAYKACYEL----GKRQS 176 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 R NPLFI+ GLGKTHL+ ++A+ +K Y T+E F+ + ++R+N + Sbjct: 177 KNRHNPLFIYGPSGLGKTHLMHSVAHRYLKNNQT--FYYFTSEKFINQLVYSLRNNKIED 234 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K ++ +DLL++DD+ L GK +EF L KQ++ A+DR PS++ D R Sbjct: 235 FKKKIKKVDLLIVDDIHVLAGKTKSSNEFLTLFADFTSGDKQLILASDRHPSQMTEFDER 294 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 RSR G++V + + + R IL+ + A +++ +E + +A+ V ++ R L Sbjct: 295 FRSRFSWGLTVAVDPPEIDTRVQILQKKAASY-----GMSLPKECALFIAQNVVSNVRRL 349 Query: 372 DGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +GA NQ+ + +T E+ L +V + + +++I+++VA++Y+++ D+L Sbjct: 350 EGALNQVFANANLTGAPITLEMVQYALKDIV-AMRVQAVNMDNIRKVVAEYYDVTIKDML 408 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 +R R++ RPRQ+AM LS+ +T SFPEIG+ FG RDHTTV+HA KV ++ D Sbjct: 409 GRKRTRSIARPRQIAMALSRELTSESFPEIGQSFGGRDHTTVMHACDKVNELRAADPAFD 468 Query: 491 KEVELLKRLIS 501 K+ + L ++ Sbjct: 469 KDYKTLALMLQ 479 >gi|159026644|emb|CAO86578.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 444 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 134/473 (28%), Positives = 231/473 (48%), Gaps = 37/473 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + + ++ + RLK + + +WFQ ++ + + F+ ++ YL Sbjct: 1 MDSSTQQLWHNLLERLKLLLTRPAFETWFQTATVKEWQNDRLVIQAANPFILNHLQKNYL 60 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 TI ++ ++ I G + ++ A T P+ + Sbjct: 61 STIAEVVED----IVGYPVEIQLTAQQGDSITIFQPNSSLE------------------S 98 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + L+ ++ FS F+ G +NR+A AA ++AE+ NPLF+ VGLGKT Sbjct: 99 ELSPSNKLNPKYNFSRFVVGPTNRMAHAAALAVAELPGR-----EFNPLFLCGGVGLGKT 153 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL+QAI + ++ P RV Y++ E F +AIR + + ++ R+ D+LL+DD+QF Sbjct: 154 HLMQAIGHYRLELYPQSRVFYVSTEQFTNDLITAIRQDSMESFRNHYRHADILLVDDLQF 213 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++GK Q EF H N+L ++ KQVV A+DR P ++ SL R+ SR G+ + D Sbjct: 214 IEGKEYTQEEFFHTFNTLHEAGKQVVLASDRLPKQIPSLQDRLISRFSMGLVADIQAPDI 273 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E L + EV+ ++A T++ REL+GA + ++ I Sbjct: 274 ETRMAILQK-----KAEYENLRLPREVIEYIALNYTSNIRELEGALIR---ATTYISISG 325 Query: 390 AEIADELLSHLVNTGETKKMR-IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + E ++ ++N K E I +VA+ + +S DL N R R + RQ+ MYL Sbjct: 326 LPMTVENIAPVLNPPMAKIATSPEIIMAVVAEKFQLSIADLKGNSRRREISFARQIGMYL 385 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S P IG FG +DHTTV+++ K+ D L++ + L I+ Sbjct: 386 MRQHTDLSLPRIGEEFGGKDHTTVIYSCDKINLSQHQDRQLQEILAQLIERIN 438 >gi|187930914|ref|YP_001890898.1| chromosomal replication initiation protein [Francisella tularensis subsp. mediasiatica FSC147] gi|208780099|ref|ZP_03247442.1| chromosomal replication initiator protein DnaA [Francisella novicida FTG] gi|224458007|ref|ZP_03666480.1| chromosomal replication initiator protein [Francisella tularensis subsp. tularensis MA00-2987] gi|254875662|ref|ZP_05248372.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis MA00-2987] gi|290953775|ref|ZP_06558396.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica URFT1] gi|295312853|ref|ZP_06803584.1| chromosomal replication initiation protein [Francisella tularensis subsp. holarctica URFT1] gi|187711823|gb|ACD30120.1| chromosomal replication initiator protein DnaA [Francisella tularensis subsp. mediasiatica FSC147] gi|208744103|gb|EDZ90404.1| chromosomal replication initiator protein DnaA [Francisella novicida FTG] gi|254841661|gb|EET20097.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. tularensis MA00-2987] Length = 463 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 148/472 (31%), Positives = 234/472 (49%), Gaps = 47/472 (9%) Query: 66 SVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEIL--------------- 110 N+ + + K IK++Y I QE H +E Sbjct: 2 EQNSNLFTVYCNNEYFKKHIKSKYGNLILSTIQECHGNDLIIEYSNKKFSGEKITEVITA 61 Query: 111 -----------VRSVALPSVEKTASSPSITKLSPINTNISKSPI--------ILGKQTIS 151 V K P I+K S S + I K+ Sbjct: 62 GPQANFFSTTSVEIKDESEDTKVVQEPKISKKSNSKDFSSSQELFGFDEAMLITAKEDEE 121 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 FG PL ++VF +F+ G +N++A AA ++ + NPLFI+ GLGKTH Sbjct: 122 YSFGLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIYGGSGLGKTH 176 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI N + + PN +++Y +E F+ + ++IR + R+ D+LLIDD+QF+ Sbjct: 177 LMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFI 236 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E Sbjct: 237 AGKEGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLE 296 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILT 389 R +IL + + D + E +A V T+ REL+GA N+++ F T Sbjct: 297 TRIAIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPT 351 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A L ++ KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L+ Sbjct: 352 IEVAQACLRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLA 410 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S PEIG FG RDHTTV+HAV+ + K+ +++ ++ + ELL IS Sbjct: 411 RELTSHSLPEIGNAFGGRDHTTVMHAVKAITKLRQSNTSISDDYELLLDKIS 462 >gi|15618339|ref|NP_224624.1| chromosomal replication initiation protein [Chlamydophila pneumoniae CWL029] gi|15835957|ref|NP_300481.1| chromosomal replication initiation protein [Chlamydophila pneumoniae J138] gi|33241773|ref|NP_876714.1| chromosomal replication initiation protein [Chlamydophila pneumoniae TW-183] gi|14194706|sp|Q9Z8B9|DNAA2_CHLPN RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|4376705|gb|AAD18568.1| Replication Initiation Factor [Chlamydophila pneumoniae CWL029] gi|8978796|dbj|BAA98632.1| replication initiation factor [Chlamydophila pneumoniae J138] gi|33236282|gb|AAP98371.1| replication initiation protein dnaA [Chlamydophila pneumoniae TW-183] gi|269303303|gb|ACZ33403.1| chromosomal replication initiator protein DnaA [Chlamydophila pneumoniae LPCoLN] Length = 450 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 139/464 (29%), Positives = 230/464 (49%), Gaps = 27/464 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + +K + + +W ++ + L VP F++ ++ + Y + Sbjct: 10 WEQFLNYVKTRCSKTAFENWISPIQVLEETQEKIRLEVPNIFVQNYLLDNYKRDLCSFVP 69 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + +E +V PS +P+ + + I + F L Sbjct: 70 LDVHGEPALEFVVAEHKKPS-------------APVASQKESNEGISEVFEETKDFELKL 116 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ + Sbjct: 117 NLSYRFDNFIEGPSNQFVKSAAVGIAGKPGRSY-----NPLFIHGGVGLGKTHLLHAVGH 171 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQ 277 + NLR+ +T E F+ ++ +K+ R++DLLL+DD+QFLQ + + Sbjct: 172 YVREHHKNLRIHCITTEAFINDLVYHLKSKSVDKMKNFYRSLDLLLVDDIQFLQNRQNFE 231 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EFC+ +L++ +KQ+V +D+PPS+L+ L RI +R++ G+ +G+ D E R +IL+ Sbjct: 232 EEFCNTFETLINLSKQIVITSDKPPSQLK-LSERIIARMEWGLVAHVGIPDLETRVAILQ 290 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADEL 396 + + E L I E+ ++A + + R+L+GA N+L F LT E Sbjct: 291 H-----KAEQKGLLIPNEMAFYIADHIYGNVRQLEGAINKLTAYCRLFGKSLTETTVRET 345 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L + +K+ +E I + VA + + NDL N R + +V RQ+AMYL+K + S Sbjct: 346 LKELFRSPTKQKISVETILKSVATVFQVKLNDLKGNSRSKDLVLARQIAMYLAKTLITDS 405 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IG FG + H+TVL+A + +E L+ D TLK++V L K I Sbjct: 406 LVAIGAAFG-KTHSTVLYACKTIEHKLQNDETLKRQVNLCKNHI 448 >gi|322375216|ref|ZP_08049730.1| replication initiation protein DnaA [Streptococcus sp. C300] gi|321280716|gb|EFX57755.1| replication initiation protein DnaA [Streptococcus sp. C300] Length = 453 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 141/475 (29%), Positives = 233/475 (49%), Gaps = 28/475 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + V N + +P + ++ + + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYATPAELIKVEENTATIFLPRSEMEMVWEKQLKDI 60 Query: 93 ITKL-FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I F+ S I+ I + + S + +TN + Sbjct: 61 IVAAGFEIYDSEIKPHYIFTKPQSTESPQVN------------DTNNVSTYDYTPTLPTI 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKNIKD 338 Query: 388 LTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + IE IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDARQILVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIEAIKKKIK 453 >gi|306826187|ref|ZP_07459522.1| DNA-directed DNA replication initiator protein [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431663|gb|EFM34644.1| DNA-directed DNA replication initiator protein [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 453 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 229/475 (48%), Gaps = 28/475 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP-TNFLKAWIKNRYLE 91 + + + + + ++ +Y + + V N + +P + W K Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYATPAELIKVEENTATIFLPRSEMEMVWEKQLKDI 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I F+ S I+ I + + + +TN + Sbjct: 61 IIAAGFEIYDSEIKPHYIFTKPQSTEYPQVN------------DTNSISTYDYTPALPTI 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSETGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPI 387 E R +IL+ S+ E + + L ++A ++ REL+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + IE IQ V Y +S ++ RRV+ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDARQILVIPIEKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ EVE +K+ I Sbjct: 399 YLARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEVEAIKKKIK 453 >gi|62184989|ref|YP_219774.1| chromosomal replication initiation protein [Chlamydophila abortus S26/3] gi|62148056|emb|CAH63809.1| chromosomal replication initiator protein [Chlamydophila abortus S26/3] Length = 450 Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 140/466 (30%), Positives = 233/466 (50%), Gaps = 27/466 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + + +K + + +W ++ + L VP F++ ++ + Y + + Sbjct: 8 STWEQFVNYVKTRCSKTAFENWISPIQIIEETQEKIRLEVPNIFVQNYLLDNYKQDLCSF 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +E +V + + A P + +PI T S F Sbjct: 68 VPLDAQGEPALEFVVAEIKKAPPQPVA--PREQQETPIETFEE-----------SKDFEL 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L++ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ Sbjct: 115 KLNTAYRFDNFIEGPSNQFVKSAAVGIAGRPGRSY-----NPLFIHGGVGLGKTHLLHAV 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + NLRV +T E F+ +R +K+ R++DLLL+DD+QFLQ + Sbjct: 170 GHYVREHHKNLRVHCITTEAFINDLVQHLRLKSIDKMKNFYRSLDLLLVDDIQFLQNRQN 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + EFC+ +L++ KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +I Sbjct: 230 FEEEFCNTFETLINLNKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETRVAI 288 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 L++ + E L+I E+ ++A + + R+L+GA N+L F LT I Sbjct: 289 LQH-----KAEQKGLHIPNEIAFYIADHIYGNVRQLEGAINKLTAYCRLFGKTLTETIVR 343 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L + +K+ +E I + VA + + +L N R + +V RQVAMYL+K + Sbjct: 344 DTLKELFRSPSKQKVSVESILKSVATVFQVKLQELKGNSRSKELVLARQVAMYLAKTLIT 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG + H+TVL+A + +E+ +E D TL +++ L K I Sbjct: 404 DSLVAIGSAFG-KTHSTVLYACKTIEQKIEKDETLTRQISLCKNHI 448 >gi|330814957|ref|YP_004358662.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] gi|327367350|gb|AEA58706.1| Chromosomal replication initiator protein DnaA [Burkholderia gladioli BSR3] Length = 527 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 126/364 (34%), Positives = 200/364 (54%), Gaps = 13/364 (3%) Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + G S S L+ F F+ G +N++A AA +A+ Y NPL Sbjct: 174 ANAPAGGDAADSTYERSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGVSY-----NPL 228 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 F++ VGLGKTHL+ AI N + + R+ Y+ AE ++ A + + K + Sbjct: 229 FLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHS 288 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +DLLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ +D R+ SR Sbjct: 289 LDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDS 348 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G++V + + EMR +IL + + + +N++E+V VA+ + ++ REL+GA ++ Sbjct: 349 GLTVAIEPPELEMRVAIL-----MRKAQSEGVNLSEDVAFFVAKHLRSNVRELEGALRKI 403 Query: 379 VFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + F +T E+ E L L+ T + +++ +E+IQ+ VA YNI D+ S +R Sbjct: 404 LAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPAN 462 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L+ Sbjct: 463 IARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLE 522 Query: 498 RLIS 501 + + Sbjct: 523 QTLK 526 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 6/103 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NEFWQHCSALLERELTPQQYVTWIKPLAPVAFDASAHTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINT 136 + L ++ + I V+ V P +++PS+ + Sbjct: 62 SDLARDFWNAP----IDVQFVLDPKAGARSAAPSVAPRPSVAA 100 >gi|319940207|ref|ZP_08014560.1| chromosomal replication initiator protein dnaA [Streptococcus anginosus 1_2_62CV] gi|319810678|gb|EFW07008.1| chromosomal replication initiator protein dnaA [Streptococcus anginosus 1_2_62CV] Length = 447 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 139/469 (29%), Positives = 231/469 (49%), Gaps = 33/469 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + V + Q+ + Y + + V + + + + + + + I Sbjct: 6 NFWARVLELAQKQIKKNTYDYFVSGARLMKVENFQATVLLDSPVKQLFWDQNLADVIITA 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E ++ V + + + T ++ S+ K S P + Sbjct: 66 GFEIYNDQITVHYIFQEENDEVTQSTNTNHSVGKPS------------------LPPVET 107 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L +++ F F++G N AL+AA +++E + Y NPLFI+ GLGKTHLL AI Sbjct: 108 GLKAKYTFDNFVQGDGNVWALSAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNAI 162 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 N ++ P+ RV Y+ AE F+ F +R + K + R++DLLLIDD+Q L GK Sbjct: 163 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMESFKRTYRSLDLLLIDDIQSLGGKKV 222 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R + Sbjct: 223 STQEEFFNTFNALHGDNKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 282 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAEI 392 IL+N + E + L ++A ++ R+L+GA N L+ R +T + Sbjct: 283 ILRN-----KIEGLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMARVKNLKEITIDA 337 Query: 393 ADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E + + I+ IQ V Y +S ++ +RRV+ +V RQVAMYL++ Sbjct: 338 AAEAIRARKQDASQILVIPIDKIQTEVGNFYGVSVKEMKGSRRVQNIVLARQVAMYLARE 397 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IGR FG +DHTTV+HA K++ MLETD L+ E+E +K I Sbjct: 398 LTDNSLPKIGREFGGKDHTTVIHAHGKIKTMLETDDNLRLEIENIKNKI 446 >gi|268678645|ref|YP_003303076.1| chromosomal replication initiator protein DnaA [Sulfurospirillum deleyianum DSM 6946] gi|268616676|gb|ACZ11041.1| chromosomal replication initiator protein DnaA [Sulfurospirillum deleyianum DSM 6946] Length = 441 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 130/465 (27%), Positives = 240/465 (51%), Gaps = 36/465 (7%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + LK ++ Y + ++LKF+ + + P + W+K +Y E + LF Sbjct: 4 DNILELLKEEISSLEYDRYIKQLKFNEKASNSDQMIFVAPNILIANWVKTKYAEKLAHLF 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + ++I+++ + K++S+ + ++I + Sbjct: 64 ELKTGKKPEIKIVLKEHLKSTKTKSSSTEIL-------------------ESIKSTKNTI 104 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F++F+ GSSN+ A TAA+S+AE V NP+FI+ GLGKTHL+ AI Sbjct: 105 LNPSYTFNSFVVGSSNQYAYTAAKSVAEKPG-----VMYNPVFIYGPTGLGKTHLIHAIG 159 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + V+Y T E FM F +R+ ++ R+ D+LLIDD QFL K Sbjct: 160 NYA--QSKGKIVIYATIEQFMNDFTYNLRNQSMERFREKYRSCDVLLIDDTQFLSNKIQT 217 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L + KQ+V +D+PP + L+ R++SR + G+ +GL + E + +I+ Sbjct: 218 QEEFFHTFNELHSAGKQIVLTSDKPPKMINGLEDRLKSRFEWGLIADVGLPELETKIAII 277 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADE 395 K + + +N+N +++ ++A + + RE++ A L +T E A Sbjct: 278 KKKCELD-----GINLNSDIVNYIASNMGDNIREIESAIINLNAYALLMRQDITLEFAKN 332 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + +EDI +++AK NI +++ S +R + +V R++ +YL++ +TP Sbjct: 333 VMREQIKER-KENISLEDIIQIIAKDLNIKPSEIKSTKRSKNIVEARRIGIYLARTLTPN 391 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P + FG +DHT V H ++K+ +++ET+ + K +VE LK I Sbjct: 392 SMPSLASYFGMKDHTAVSHNIKKINELIETNESFKLKVEDLKNKI 436 >gi|116688025|ref|YP_833648.1| chromosomal replication initiation protein [Burkholderia cenocepacia HI2424] gi|166201863|sp|A0K2M8|DNAA_BURCH RecName: Full=Chromosomal replication initiator protein DnaA gi|116646114|gb|ABK06755.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia HI2424] Length = 525 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 209/390 (53%), Gaps = 17/390 (4%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + LPS+ ++ P + G + S S L+ F F+ G +N Sbjct: 150 IDLPSLPAHEAAAGRRTWRPGPGAAPAN----GGEADSMYERSKLNPVLTFDNFVTGKAN 205 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ Sbjct: 206 QLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIH 260 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + Sbjct: 261 AEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKA 320 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + +N+ Sbjct: 321 QVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVNL 375 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 +E+V VA+ + ++ REL+GA +++ F ++ E+ E L L+ T + +++ + Sbjct: 376 SEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDLL-TVQNRQISV 434 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTT Sbjct: 435 ENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTT 494 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHAVRK+ D L E+ +L++ + Sbjct: 495 VLHAVRKIADERSKDAQLNHELHVLEQTLK 524 Score = 73.9 bits (180), Expect = 6e-11, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDASANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 + L +E + V+ ++ A Sbjct: 62 SDLAREFWNTPIEVQFVLDPKA 83 >gi|256848506|ref|ZP_05553948.1| chromosomal replication initiator protein DnaA [Lactobacillus coleohominis 101-4-CHN] gi|256714773|gb|EEU29752.1| chromosomal replication initiator protein DnaA [Lactobacillus coleohominis 101-4-CHN] Length = 439 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 141/470 (30%), Positives = 236/470 (50%), Gaps = 36/470 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +S++ V + K + P Y + K +S+ ++ + + +PT++ W K Sbjct: 2 TELDSLWETVQNEFKQSITPPTYENVVAPAKAYSLQNHQLTVVLPTDYHLDWWKKSLNIQ 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + E+ ++ + + P+ +P Sbjct: 62 LKHILHEKTGEEIEPIYVLTKDLMKKADPAPDQPTYKTQTP------------------- 102 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ + F F+EG +N+ A +A + +E Y NPL I+ VGLGKTHL Sbjct: 103 -----LNPEYTFDNFVEGRTNQFAYASAFAASEQPGGLY-----NPLLIYGDVGLGKTHL 152 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QAIAN + P+ ++ Y+T+E FM + ++I+ + R++D LL+DD+QF Sbjct: 153 MQAIANNMLVHNPDAKIKYVTSENFMNDYINSIKTGTQEQFRQEYRDLDALLVDDVQFFS 212 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q EF + NSL D+ KQ+V AD+ P E+ +L R+ SR G++V + D E Sbjct: 213 EKNGTQLEFFNTFNSLHDNNKQIVLTADQNPKEIPNLTDRLVSRFVWGLTVEITAPDLET 272 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTA 390 R +IL + + I EV +A + T+ REL+GA ++ VF + Sbjct: 273 RIAILNRKAEEENLQ----GIPNEVFNFIASKINTNVRELEGALMRVRVFADLHKTSINE 328 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E L + + I+ IQ+ VA H+NI+++D+ +RV+ +V PRQ+AMYLS+ Sbjct: 329 AVAREALQG-IGNDAPATLSIDLIQKKVAAHFNINQSDITGKKRVKNIVIPRQIAMYLSR 387 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P IG+ FG +DHTTVLHA+ K+EK + +D L+KE+ LK+ + Sbjct: 388 ELTDNSLPRIGKEFGGKDHTTVLHAIDKIEKQMTSDSNLQKEINSLKKDL 437 >gi|220910784|ref|YP_002486093.1| chromosomal replication initiator protein DnaA [Arthrobacter chlorophenolicus A6] gi|219857662|gb|ACL38004.1| chromosomal replication initiator protein DnaA [Arthrobacter chlorophenolicus A6] Length = 473 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 139/484 (28%), Positives = 237/484 (48%), Gaps = 21/484 (4%) Query: 24 VDVDKRCLEVNCESIFTIVSSRLKN--QVGPDVYASWFQRL-KFHSVLHNIVHLSVPTNF 80 + VD+ S + V S L+N +V P F L + ++ + + ++VP Sbjct: 1 MTVDEANHANTVGSSWRRVISLLENDHRVTPRQ--RGFVILAQAQGLIGSTLLVAVPNEL 58 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 + ++ + + + S I V + +P ++ P + + I + Sbjct: 59 TREVLQTQVKDALDDALHNVFSEDIRCAIDVDTDLVPIHKEP--EPVVEPAYAQDQLIEQ 116 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 P + T L+ ++VF TF+ GSSNR A V NPLF Sbjct: 117 KPQPMLPSTSHEF--GRLNPKYVFDTFVIGSSNRF-----AHAAAVAVAEAPAKAYNPLF 169 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ GLGKTHLL AI + + + +RV Y+ +E F F ++IRD+ + K + RN+ Sbjct: 170 IYGDSGLGKTHLLHAIGHYARRLYSGIRVRYVNSEEFTNDFINSIRDDEGASFKTTYRNV 229 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LLIDD+QFL GK EF H NSL ++ KQVV +D+PP L + R++SR + G Sbjct: 230 DVLLIDDIQFLAGKDRTLEEFFHTFNSLHNNNKQVVITSDQPPKLLAGFEDRMKSRFEWG 289 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + + + E R +IL+ + L+ ++ L ++A ++++ REL+GA ++ Sbjct: 290 LLTDIQPPELETRIAILRK-----KALSEGLSAPDDALEYIASKISSNIRELEGALIRVT 344 Query: 380 FRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 S + +A+ +L L+ +++ I + A ++ +S +L S R RT+ Sbjct: 345 AFASLNRQPVDVALAEMVLKDLITDDGAQEITSGQILQQTADYFKLSMEELCSKSRTRTL 404 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ + +V L Sbjct: 405 VTARQIAMYLCRELTDMSLPKIGQELGGRDHTTVIHADRKIRELMAERRVIYNQVTELTN 464 Query: 499 LISE 502 I + Sbjct: 465 RIKQ 468 >gi|319899889|ref|YP_004159617.1| chromosomal replication initiator protein DnaA [Bacteroides helcogenes P 36-108] gi|319414920|gb|ADV42031.1| chromosomal replication initiator protein DnaA [Bacteroides helcogenes P 36-108] Length = 463 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 122/473 (25%), Positives = 236/473 (49%), Gaps = 15/473 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+N ++ +++ V Y +WF + + + VP+ F ++++++++ Sbjct: 3 EINHVGLWNRCLEIIRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDKFVD 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + K + + V EKT + S + + I Q I Sbjct: 63 LLRKTLYKVIGEGTKLMYNVMVDKSSRPEKTVNYESTNRTIIPQKTVIDKQI---PQIIV 119 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P L+ + F TFIEG SN+++ + A+++A + NPLF++ + G+GKTH Sbjct: 120 PELDPHLNPEYNFETFIEGYSNKLSRSVAEAVALNPAK----TIFNPLFLYGASGVGKTH 175 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L AI + P RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q Sbjct: 176 LANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEF 235 Query: 272 QG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E Sbjct: 236 AGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELEKPTVE 295 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 +R +IL+N + L EV+ ++A V S R+L+G ++ + + + Sbjct: 296 LRKNILRN-----KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKEID 350 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ ++ +VN+ E+K + ++DI V KH+ + + + R R VV+ RQ+AM+L+ Sbjct: 351 LELTQRIVRKVVNS-ESKSITVDDIINTVCKHFGLDTATIHTKSRKREVVQARQIAMFLA 409 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K T S +IG G +DH TVLHA + ++++ E D + + E++ ++ ++ + Sbjct: 410 KNYTDFSTAKIGALIGHKDHATVLHACKTIKELKEVDKSFRAEIDEIQSVLKK 462 >gi|886325|gb|AAB53141.1| chromosomal replication initiator protein [Mycobacterium leprae] Length = 521 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 135/506 (26%), Positives = 245/506 (48%), Gaps = 46/506 (9%) Query: 31 LEVNCESIFTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHL 74 L + +++ V S L + + P +W ++ +++ L Sbjct: 24 LSLGFTTVWNAVVSELNGESNTDDEATNDSTLVTPLTPQQ-RAWLNLVQPLTIIEGFALL 82 Query: 75 SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 SVP++F++ I+ IT + + + + + ++ +SS + Sbjct: 83 SVPSSFVQNEIERHLRTPITDALSRRLGQQIQLGVRIAPPSTDHIDDNSSSADVLLTDDC 142 Query: 135 NTNISK---SPIILGKQTISPVF-------------GSPLDSRFVFSTFIEGSSNRVALT 178 T+ + P+ Q + F G+ L+ R+ F TF+ G+SNR A Sbjct: 143 GTDTDENYGEPLTGEYQGLPTYFTERPHHTESTVTGGTSLNRRYTFETFVIGASNRFAHR 202 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 A + NPLFI GLGKTHLL A N + + P +RV Y++ E F Sbjct: 203 A-----ALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFT 257 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 F +++RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V + Sbjct: 258 NDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVIS 317 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L + +VL Sbjct: 318 SDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPGDVL 372 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A ++ + REL+GA ++ S + +A+ +L L+ T ++ I Sbjct: 373 ELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMT 432 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 A++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A Sbjct: 433 ATAEYFDTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQ 491 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 RK+ + + V+ L I + Sbjct: 492 RKILSEMAERREVFDHVKELTTRIRQ 517 >gi|332668533|ref|YP_004451540.1| chromosomal replication initiator protein DnaA [Cellulomonas fimi ATCC 484] gi|332337570|gb|AEE44153.1| chromosomal replication initiator protein DnaA [Cellulomonas fimi ATCC 484] Length = 500 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 137/506 (27%), Positives = 238/506 (47%), Gaps = 48/506 (9%) Query: 32 EVNCESIFTIVSSRLKN--QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + ++ V + L+ + P ++ + + +L + L+V + K +++ R Sbjct: 4 DEELARVWGHVVATLEASPDITPRQI-AFVRLARPLGLLDGTLLLAVGNDLTKDYLETRV 62 Query: 90 LETITKLFQEEHSRIQGVEILVRSV----ALPSVEKTASSPSITKLSPINTN-------- 137 +T+ + R I V P++ +P T L P + + Sbjct: 63 RAEVTEALSDALDREARFAITVDPEVATDTTPALRVVPPAPPATDLRPGDDDDVPERPDL 122 Query: 138 -------------------ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALT 178 + P+ G++ + + L+ ++ F TF+ GSSNR Sbjct: 123 SVVHGDDQRGRQDGRRDPAVDDRPLPPGRKQAAEP--ARLNPKYQFETFVIGSSNRF--- 177 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 A V NPLFI+ GLGKTHLL AI + + P +RV Y+ +E F Sbjct: 178 --AHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAYNLYPGVRVRYVNSEEFT 235 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 F ++I + A + R +D+LLIDD+QFLQGK EF H N+L ++ KQVV Sbjct: 236 NDFINSISEGKAGAFQRRYREVDVLLIDDIQFLQGKEQTMEEFFHTFNTLHNANKQVVIT 295 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +D PP +L + R+RSR + G+ + D E R +IL+ + +L +VL Sbjct: 296 SDLPPKQLNGFEDRMRSRFEWGLITDVQPPDLETRIAILRK-----KAGSERLQAPPDVL 350 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQR 416 ++A ++T+ REL+GA ++ + + +A+ +L L+ +T ++ + Sbjct: 351 EYIASKISTNIRELEGALIRVTAFANLNRQQVDLSLAEIVLKDLITDEQTAEITATQVIG 410 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 A ++ +S +DL + R R +V RQ+AMYL + +T S P+IG+ FG RDHTTV+HA Sbjct: 411 QTAAYFGLSIDDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGQAFGGRDHTTVMHAN 470 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 RK+ +++ ++ +V L I + Sbjct: 471 RKIRELMAERRSIYNQVTELTNRIKQ 496 >gi|170697754|ref|ZP_02888841.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria IOP40-10] gi|170137369|gb|EDT05610.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria IOP40-10] Length = 525 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 209/390 (53%), Gaps = 17/390 (4%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + LPS+ ++ P + G + S S L+ F F+ G +N Sbjct: 150 IDLPSLPAHEAAAGRRTWRPGPGAAPAN----GGEADSMYERSKLNPVLTFDNFVTGKAN 205 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ Sbjct: 206 QLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIH 260 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + Sbjct: 261 AEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKA 320 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + +N+ Sbjct: 321 QVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVNL 375 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 +E+V VA+ + ++ REL+GA +++ F ++ E+ E L L+ T + +++ + Sbjct: 376 SEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDLL-TVQNRQISV 434 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTT Sbjct: 435 ENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTT 494 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHAVRK+ D L E+ +L++ + Sbjct: 495 VLHAVRKIADERSKDAQLNHELHVLEQTLK 524 >gi|269124278|ref|YP_003297648.1| chromosomal replication initiator protein DnaA [Thermomonospora curvata DSM 43183] gi|268309236|gb|ACY95610.1| chromosomal replication initiator protein DnaA [Thermomonospora curvata DSM 43183] Length = 721 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 203/374 (54%), Gaps = 15/374 (4%) Query: 133 PINTNISKSPIILGKQTISPVFGS---PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 P + + + P GS L+ ++ F TF+ GSSNR A AA ++AE + Sbjct: 352 PGDGGEHEQQPWQRRPAAEPRPGSEHARLNPKYTFETFVIGSSNRFAHAAAVAVAEQPAK 411 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 Y NPLFI+ GLGKTHLL AI + + +RV Y+++E F F +AIRD Sbjct: 412 AY-----NPLFIYGDSGLGKTHLLHAIGHYAQSLFSGVRVRYVSSEEFTNDFINAIRDGK 466 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 A + + R+ID+LL+DD+QFL+GK Q EF H N+L +++KQ+V ++DRPP +L +L Sbjct: 467 ADHFRRRYRDIDILLVDDIQFLEGKEQTQEEFFHTFNTLHNASKQIVISSDRPPKDLVTL 526 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+R+R + G++ + + E R +IL+ + L + ++V+ +A + T+ Sbjct: 527 EDRLRNRFEWGLTTDVQPPELETRIAILQK-----KARQEGLAVPQDVVEFIASQIATNI 581 Query: 369 RELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA ++ S + +A+ +L L+ ++ I +++ + Sbjct: 582 RELEGALIRVTAYASLNRQSVDMRVAETVLKDLIPDDSGPEITAAMIMAQTVEYFGTTIE 641 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DL R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ ++ Sbjct: 642 DLCGPSRSRMLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHAERKIRALMAERR 701 Query: 488 TLKKEVELLKRLIS 501 + +V L I Sbjct: 702 AIYNQVTELTGRIK 715 Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 35/105 (33%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + +++ + L P Y +W ++ +++ L+ P F K ++ R I Sbjct: 5 DLTAVWARTLAALSEGDLPPSYRAWLPLVRPLALVEGTALLAAPNEFAKDALETRLRGLI 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNI 138 T+ E R V + V+ + ++ Sbjct: 65 TQALSAELGREIRVAVTVQPEPPSDPAPADRAQPAPPAYRGQSHP 109 >gi|319945982|ref|ZP_08020231.1| DNA-directed DNA replication initiator protein [Streptococcus australis ATCC 700641] gi|319747790|gb|EFW00035.1| DNA-directed DNA replication initiator protein [Streptococcus australis ATCC 700641] Length = 456 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 146/471 (30%), Positives = 231/471 (49%), Gaps = 24/471 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E+ + V K +++ + K + + + K + + + I Sbjct: 5 ETFWNRVIELSKKTFKKEIFDYFVLTSKLIKIDQQEAVIYLDAEVKKLFWEENMTKVILT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 G EI + + + P++ + P Sbjct: 65 A---------GFEIYAVELTISYQFNLEEEEEEKEFIPLSEMNRNYAVSHAPIVDLPPIQ 115 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L ++ F F+ G N+ AL AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 116 TGLKKKYTFDNFVSGDGNQWALAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 170 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ PN RV Y+ AE F+ F +R N K + RN+DLLLIDD+Q L GK Sbjct: 171 IGNQIMENYPNARVKYIPAESFINEFLERLRLNDMDTFKKTYRNLDLLLIDDIQSLGGKK 230 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L+SL+ R+ +R + G++ + D+E R Sbjct: 231 VTTQEEFFNTFNALYGDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRI 290 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + ED ++ L ++A ++ R+L+GA N LV R +T + Sbjct: 291 AILRN-----KIEDLDFTFPDDTLEYLAGQFDSNVRDLEGALNDISLVARVKKIKDITID 345 Query: 392 IADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E + N + + IE IQ V K YN+S N++ +RRV+ +V RQVAMYL++ Sbjct: 346 VAAEAIRARKNEALQITVIPIEKIQTEVGKFYNVSVNEIKGSRRVQNIVLARQVAMYLAR 405 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P IGR FG +DHTTV+HA K++ M+E D L+ E++ +K+ + Sbjct: 406 EMTDNSLPRIGREFGGKDHTTVMHAYEKIKGMIEIDDNLRLEIQTIKKKLK 456 >gi|297588057|ref|ZP_06946701.1| ATPase [Finegoldia magna ATCC 53516] gi|297574746|gb|EFH93466.1| ATPase [Finegoldia magna ATCC 53516] Length = 481 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 142/489 (29%), Positives = 244/489 (49%), Gaps = 31/489 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + ++ +S+ K ++ + +W LK + + L P F K I N+Y + Sbjct: 2 TDKDELWLKISNTFKQEMSDLNFNTWIAPLKPLYLTNTEFILLSPNRFTKKTIYNKYYDD 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKT--------------ASSPSITKLSPINTNI 138 I K + + V I+ R ++ S + Sbjct: 62 IQKYLDFISNVKRKVVIIDRYEMDNYKDENIIQNQNIDGQRSILVSEEVSEDEKYTVEDK 121 Query: 139 SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 + ++T +G L S++ F TF++G +N +AL AA ++A+ + Y NP Sbjct: 122 KPETKLPEEKTDLSPYGKNLISKYKFDTFVKGKNNELALAAALAVAQNPATAY-----NP 176 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA---LNLKD 255 LFIH GLGKTHL+ AIA+ +K P RV+Y T+E F S+I D + Sbjct: 177 LFIHGKAGLGKTHLMHAIAHEILKNNPKARVIYTTSESFTNELISSIGDKSTKKNSQFRQ 236 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 RNID+LLIDD+QF+ GK Q EF H N L + KQ++ ++DRPP E+++L+ R+ S Sbjct: 237 KYRNIDVLLIDDIQFIAGKQGTQEEFFHTFNELYNHNKQIILSSDRPPKEIKTLEERLVS 296 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R + G+ + DYE R +I+ L + ++ E++ ++A V ++ REL+GA Sbjct: 297 RFEWGLMADIQPPDYETRVAIINEYLDRNNT-----SLTPEIIDYIAMNVKSNIRELEGA 351 Query: 375 FNQLVFRHSFAPI--LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 +V + + +T ++A +L L+ + + + I+ I V YN+S++DLLS Sbjct: 352 VMNVVGQKTLIGDGNITLDLAKNVLKQLIADTQLRPVTIDLIIESVCDRYNVSQDDLLSK 411 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 +R + + PRQ+AMY+S+ + S I FG +DH+TV+H ++K+E ++ +E Sbjct: 412 KRSKQIAYPRQIAMYVSRKLLDISLVSIASSFG-KDHSTVMHGIKKIENDIKKSSEFDEE 470 Query: 493 VELLKRLIS 501 ++ L I Sbjct: 471 IDNLINYIQ 479 >gi|118466558|ref|YP_879304.1| chromosomal replication initiation protein [Mycobacterium avium 104] gi|118167845|gb|ABK68742.1| chromosomal replication initiator protein DnaA [Mycobacterium avium 104] Length = 498 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 134/507 (26%), Positives = 238/507 (46%), Gaps = 57/507 (11%) Query: 39 FTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK 82 + V S L + + P +W ++ +++ LSVP++F++ Sbjct: 2 WNAVVSELNGEPVADGGAANRTTLVTPLTPQQ-RAWLNLVRPLTIVEGFALLSVPSSFVQ 60 Query: 83 AWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 I+ IT + +++ VR P + A P + +S Sbjct: 61 NEIERHLRAPITDALSRRLGQ--QIQLGVRIAPPPDDVEDALIPPAEPFPDTDAALSADD 118 Query: 143 IILGKQTISP-------------------------VFGSPLDSRFVFSTFIEGSSNRVAL 177 G+ + G+ L+ R+ F TF+ G+SNR Sbjct: 119 GADGEPVENGEPVTDTQPGWPNYFTERPHAIDPAVAAGTSLNRRYTFDTFVIGASNRF-- 176 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 A + NPLFI GLGKTHLL A N + + P +RV Y++ E F Sbjct: 177 ---AHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEF 233 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVA 296 F +++RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V Sbjct: 234 TNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVI 293 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L + ++V Sbjct: 294 SSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPDDV 348 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQ 415 L +A ++ + REL+GA ++ S + +A+ +L L+ T ++ I Sbjct: 349 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKSLAEIVLRDLIADASTMQISAATIM 408 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 A++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A Sbjct: 409 AATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYA 467 Query: 476 VRKVEKMLETDITLKKEVELLKRLISE 502 RK+ + + V+ L I + Sbjct: 468 QRKILSEMAERREVFDHVKELTTRIRQ 494 >gi|322390524|ref|ZP_08064042.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 903] gi|321142798|gb|EFX38258.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 903] Length = 452 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 233/471 (49%), Gaps = 28/471 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ + Q+ Y + K + + + N+ + + + + Sbjct: 5 EQFWSRFLELAQLQLKDSAYDFFVADSKLVKIDGETATIYLDGNYKELFWETNLKNALIT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E ++ + E+ SS S + +++ P+ P Sbjct: 65 ASFEVYNTDLKFHFV-----FEDTEEIPSSHSSENRRLSSGSLTTEPL--------PKID 111 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 112 TGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ PN RV Y+ AE F+ F +R K++ R++DLLLIDD+Q L GK Sbjct: 167 IGNQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSLGGKK 226 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L+SL+ R+ +R + G++ + D+E R Sbjct: 227 VTTQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRI 286 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + ED + L ++A ++ R+L+GA N L+ + +T + Sbjct: 287 AILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKEITID 341 Query: 392 IADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E + N + IE IQ V Y +S ++ +RRV+ +V RQVAMYLS+ Sbjct: 342 VAAEAIRARKNDNSKTLVIPIEKIQEAVGAFYGVSVKEIKGSRRVQNIVLARQVAMYLSR 401 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P IG+ FG +DHTTV+HA K++ M++TD L+ E++ +K+ ++ Sbjct: 402 EMTDNSLPRIGKEFGGKDHTTVIHAYEKIKSMVDTDDNLRLEIQSIKKKLN 452 >gi|298345816|ref|YP_003718503.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 43063] gi|304390480|ref|ZP_07372433.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657689|ref|ZP_07910571.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235877|gb|ADI67009.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii ATCC 43063] gi|304326236|gb|EFL93481.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315492161|gb|EFU81770.1| DNA-directed DNA replication initiator protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 483 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 138/470 (29%), Positives = 224/470 (47%), Gaps = 15/470 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYA-SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++ + L + + ++ K + L+V +N +K I+++Y Sbjct: 13 DLGPTDFWAKALENLSVSGKIGNFDLALIRQSKGLGESGDAAVLAVSSNDVKTMIESKYS 72 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + F E R I+ L ++ T + P +P+ + Sbjct: 73 DLFKTTFSEVLHRPINNLIVTVDENLGNMAPTPQTFEPVAPQPAPPIAPTTPVWEPEHQQ 132 Query: 151 SPVFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S L+ + F +F+ GSSN AA+S+ + Y NPLFI+ GLG Sbjct: 133 TLHIDSNTGLNPTYTFDSFVIGSSNSFTAAAAESVVASPAKAY-----NPLFIYGGPGLG 187 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N +++ P+ +V Y+++E F F +AI + R +D LLIDD+ Sbjct: 188 KTHLLHAIGNYALELYPDSKVKYISSEEFTNEFINAIASQTFAEFQARYREVDFLLIDDI 247 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK EF H N+L + KQVV +D P EL+ + R+RSRL+ G+ + Sbjct: 248 QFLAGKEQTLEEFFHTFNTLHTAQKQVVITSDVAPKELKGFEERVRSRLEWGLMADIQPP 307 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 E R +IL+ + + + + ++V +A V + R L+GA ++ S + Sbjct: 308 SLETRIAILRR-----KAQAGNMQMPDDVAEFIASNVDSDIRALEGALIRVTAYWSLNHV 362 Query: 388 L-TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 T E A + L+ K++ E I A++++++ DLLS R RTVV PRQ+AM Sbjct: 363 PATIETAKLAIRDLMTGKGAKEITPEMIIDCTAQYFSLTSEDLLSANRSRTVVGPRQIAM 422 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 YL + +T S P++G FG RDHTTV+HA +KV ++ D K V + Sbjct: 423 YLCRELTDLSLPQVGAAFGGRDHTTVMHANKKVAASMKEDTQTFKSVSDI 472 >gi|115350057|ref|YP_771896.1| chromosomal replication initiation protein [Burkholderia ambifaria AMMD] gi|172059068|ref|YP_001806720.1| chromosomal replication initiation protein [Burkholderia ambifaria MC40-6] gi|122324479|sp|Q0BJW1|DNAA_BURCM RecName: Full=Chromosomal replication initiator protein DnaA gi|226735785|sp|B1YPZ0|DNAA_BURA4 RecName: Full=Chromosomal replication initiator protein DnaA gi|115280045|gb|ABI85562.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria AMMD] gi|171991585|gb|ACB62504.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria MC40-6] Length = 525 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 209/390 (53%), Gaps = 17/390 (4%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + LPS+ ++ P + G + S S L+ F F+ G +N Sbjct: 150 IDLPSLPAHEAAAGRRTWRPGPGAAPAN----GGEADSMYERSKLNPVLTFDNFVTGKAN 205 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ Sbjct: 206 QLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIH 260 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + Sbjct: 261 AEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKA 320 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + +N+ Sbjct: 321 QVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVNL 375 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 +E+V VA+ + ++ REL+GA +++ F ++ E+ E L L+ T + +++ + Sbjct: 376 SEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDLL-TVQNRQISV 434 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTT Sbjct: 435 ENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTT 494 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHAVRK+ D L E+ +L++ + Sbjct: 495 VLHAVRKIADERSKDAQLNHELHVLEQTLK 524 >gi|330995967|ref|ZP_08319861.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT 11841] gi|329573964|gb|EGG55542.1| replication initiator protein DnaA [Paraprevotella xylaniphila YIT 11841] Length = 468 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 124/478 (25%), Positives = 231/478 (48%), Gaps = 17/478 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + +S++ ++N V Y +WF+ ++ S ++ +P+ + ++ + Sbjct: 1 MEGSAQSLWERCLPIIRNNVDEKQYRTWFEPIQIISFEKQVLTFGLPSQYFYEFLSEHFG 60 Query: 91 ETITKLFQEEHSR--IQGVEILVRSV--ALPSVEKTASSPSITKLSPINTNISKSPIILG 146 I + + ++V +E + P + T +++P L Sbjct: 61 RLIFSVVRRVFGEGTQLKYSLMVDQTHHLTVDIEPVNTQPLTPRAKIQATGSNRAPSPL- 119 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + + L+ + F FIEG SN++ + Q+IAE NPLFI+ + G Sbjct: 120 QAPMPQDLDPQLNRNYSFENFIEGVSNKLPRSVGQAIAEHPKQS----TFNPLFIYGASG 175 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHL+ AI + P RV+Y++A F ++ ++R N + + + ID+L+ID Sbjct: 176 VGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFINFYQTIDVLIID 235 Query: 267 DMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q Q+ F H+ N L + +Q++ +DRPP+ L+ ++ R+ +R + G+ L Sbjct: 236 DVQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERLLTRFKWGLLAELE 295 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 + ++R IL+N + L I EEV+ V+ V S REL+G N L+ + Sbjct: 296 KPNQQLRHDILEN-----KIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNSLMAYSVVW 350 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + +A+++L V E K + I+ I V ++N+ + D+ + R + V + RQ+ Sbjct: 351 NRDIDLPLAEQILKRAVKV-ENKPVTIDFILDKVCGYFNVKQEDVFTKCRKQPVAQVRQI 409 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL++ T S IG G R H TVLH+ VE L D K +++ +++L+ + Sbjct: 410 AMYLAQKHTNLSLARIGSLIGKRTHATVLHSCSVVEDRLHVDKAFKSKMDEIEKLLKQ 467 >gi|332976004|gb|EGK12875.1| DNA-directed DNA replication initiator protein DnaA [Psychrobacter sp. 1501(2011)] Length = 469 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 133/474 (28%), Positives = 241/474 (50%), Gaps = 23/474 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ + L+ Q+ + + W + L V+ + + L P + ++ + I +L Sbjct: 7 LWDRCLNDLRYQLKENEFTMWLRPLSA-KVVGDKLELLAPNQYFVTHVQENHFAAIEQLA 65 Query: 98 -QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG- 155 Q + I V I V S P+ + + + + + S + + + +S Sbjct: 66 KQHSNGEISQVVIKVESSVQPAPQDSTVDRNTSNGHHNRGSASMTQGLDSEGNLSDAAQM 125 Query: 156 ------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S ++ F F TF+ G SN +A A Q + + R NPLF++ + GLGK Sbjct: 126 ASDKSLSYINPYFTFETFVSGKSNMLAYKACQEL----GKKQSQNRHNPLFLYGASGLGK 181 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+ ++A+ +K Y ++E F+ + A+R+ K ++ +DLL+IDD+ Sbjct: 182 THLMHSVAHKYLKI--GKTFYYFSSEKFINQLVYALRNQKIEQFKRKIKRVDLLIIDDVH 239 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 L GK EF L + KQV+ A+DR PS++ D R RSR G++V + + Sbjct: 240 VLAGKNKSSSEFLSLFADFMVEGKQVILASDRHPSQMTEFDERFRSRFSSGLAVSIEPPE 299 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 E R IL+ + ++S E + +E + +A+ V ++ R L+GA NQ+V + Sbjct: 300 METRMQILQKKASLSGVE-----LPKECALFIAQNVVSNVRRLEGALNQVVANANLTGNP 354 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + ++ L ++ ++ + +++I+++VA++Y++S DL+S +R R++ RPRQ+AM Sbjct: 355 IDLDMVQYALKDVIAIR-SQAVSMDNIRKVVAEYYDVSVKDLMSKKRTRSIARPRQIAMA 413 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T SFP+IG+ FG RDHTTV+HA KV ++ D L KE + L + Sbjct: 414 LARELTKDSFPDIGQSFGGRDHTTVMHACDKVAQLRSEDPVLDKEYKALSMTLQ 467 >gi|170731357|ref|YP_001763304.1| chromosomal replication initiation protein [Burkholderia cenocepacia MC0-3] gi|226735786|sp|B1K0Y8|DNAA_BURCC RecName: Full=Chromosomal replication initiator protein DnaA gi|169814599|gb|ACA89182.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia MC0-3] Length = 525 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 209/390 (53%), Gaps = 17/390 (4%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + LPS+ ++ P + G + S S L+ F F+ G +N Sbjct: 150 IDLPSLPAHEAAAGRRTWRPGPGAAPAN----GGEADSMYERSKLNPVLTFDNFVTGKAN 205 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ Sbjct: 206 QLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIH 260 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + Sbjct: 261 AEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKA 320 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + +N+ Sbjct: 321 QVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVNL 375 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 +E+V VA+ + ++ REL+GA +++ F ++ E+ E L L+ T + +++ + Sbjct: 376 SEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDLL-TVQNRQISV 434 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTT Sbjct: 435 ENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTT 494 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHAVRK+ D L E+ +L++ + Sbjct: 495 VLHAVRKIADERSKDAQLNHELHVLEQTLK 524 Score = 73.5 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDASANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 + L +E + V+ ++ A Sbjct: 62 SDLAREFWNTPIEVQFVLDPKA 83 >gi|24378533|ref|NP_720488.1| chromosomal replication initiation protein [Streptococcus mutans UA159] gi|290579527|ref|YP_003483919.1| chromosomal replication initiator protein [Streptococcus mutans NN2025] gi|38257598|sp|Q8DWN9|DNAA_STRMU RecName: Full=Chromosomal replication initiator protein DnaA gi|24376381|gb|AAN57794.1|AE014853_1 chromosomal replication initiator protein, DnaA [Streptococcus mutans UA159] gi|254996426|dbj|BAH87027.1| chromosomal replication initiator protein [Streptococcus mutans NN2025] Length = 452 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 145/478 (30%), Positives = 236/478 (49%), Gaps = 33/478 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ + + K V NI + + + K + + Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATFDFFVSDAKLLKVEGNIATILL-DDMKKLFWEKNLQ 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + E + +E + + T++SP I++ P + Sbjct: 60 PVVLTAGFEVFNTEISIEYV-----FEETQSTSNSPQISQNKTAELATETLPFVQND--- 111 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ ++ F F+ G NR A TA+ S+A++ Y NPLFI+ GLGKT Sbjct: 112 -------LNPKYSFDNFVIGDENRWAFTASVSVADLPGTTY-----NPLFIYGGPGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N+ + P R+ Y++AE F+ F IR LK RN+DLLLIDD+Q Sbjct: 160 HLLNAIGNSVLASNPKARIKYISAENFINEFVVHIRLQNMDELKKKFRNLDLLLIDDIQS 219 Query: 271 LQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L K Q EF + N+L D+ KQ+V +DR P +L L+ R+ +R + G++V + Sbjct: 220 LAKKSLAATQEEFFNTFNALHDNNKQIVLTSDRTPDDLNDLEQRLVTRFKWGLTVNITPP 279 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D+E R +IL N + ++ + E + ++A ++ R+L+GA + +F + Sbjct: 280 DFETRVAILNN-----KIQEYNYSFLSETIEYLAGQFDSNVRDLEGALKDISLVANFKKL 334 Query: 388 --LTAEIADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T E+A E + K + IEDIQ+ V K Y ++ ++ S +R + +V RQ Sbjct: 335 DVITVEVAAEAIRARKQDSSPKMIVIPIEDIQKQVGKFYGVTVKEIKSTKRTQNIVLARQ 394 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 V MYL++ MT S P+IG+ FG RDH+TVLHA K++ ML D +LK E+E +K I Sbjct: 395 VGMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLKIEMETIKNKIK 452 >gi|326692341|ref|ZP_08229346.1| chromosomal replication initiation protein [Leuconostoc argentinum KCTC 3773] Length = 448 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 148/476 (31%), Positives = 235/476 (49%), Gaps = 42/476 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR---Y 89 + E ++ V ++ ++GP + ++ + L ++ + + L VP I N Y Sbjct: 5 ITKEELWNQVKAKFYQEIGPVSFDTYIEPLTPITLTESRIVLEVPAEESADIIDNWNKSY 64 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + E E+ V + S+ K +PI T + Sbjct: 65 AMSFVQYAMEIAEGFIKPELRV-------------AESLPKSTPIQT-----------EN 100 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 ++ S L+ F F F+ G+ N A A+++AE Y NP I+ VGLGK Sbjct: 101 LTFTRESDLNENFTFDKFVVGAGNENAYAIARAVAEDPGRVY-----NPYLIYGGVGLGK 155 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDD 267 THL+QAI NA K P+ R+ Y TAE F+ F ++R + K R +DLLLIDD Sbjct: 156 THLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRTVDLLLIDD 215 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK +Q EF + N L + KQ++ +D+ P+E+ L R+ SR + G+S+ + Sbjct: 216 IQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQK 275 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 D R +ILKN E L I +VL +A + ++ R L+G F++ F Sbjct: 276 PDLPTRVAILKNL-----AETDNLTIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRFRN 330 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 T E A ++L L N + K+ +E IQ++VA +Y + +DL S R + +V R VA Sbjct: 331 KPATKETAQQILGDL-NINQGFKITVERIQQVVADYYMQTIDDLKSTSRKKDLVTARHVA 389 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL++ +T S P+IGR FG RDH++VLHA K+ + E+D K+ ++ L I Sbjct: 390 MYLTRTLTNESLPDIGRAFGGRDHSSVLHATNKITEKAESDARTKEMLDALTDEIK 445 >gi|315222844|ref|ZP_07864729.1| replication initiator protein DnaA [Streptococcus anginosus F0211] gi|315188080|gb|EFU21810.1| replication initiator protein DnaA [Streptococcus anginosus F0211] Length = 447 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 139/469 (29%), Positives = 231/469 (49%), Gaps = 33/469 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + V + Q+ + Y + + V + + + + + + + I Sbjct: 6 NFWARVLELAQKQIKKNTYDYFVSGARLMKVENFQATVLLDSPVKQLFWDQNLADVIITA 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 E ++ V + + + T ++ S+ K S P + Sbjct: 66 GFEIYNDQITVHYIFQEENDEVTQSTNTNHSVVKPS------------------LPPIET 107 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L +++ F F++G N AL+AA +++E + Y NPLFI+ GLGKTHLL AI Sbjct: 108 GLKAKYTFDNFVQGDGNVWALSAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNAI 162 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 N ++ P+ RV Y+ AE F+ F +R + K + R++DLLLIDD+Q L GK Sbjct: 163 GNQILENIPDARVKYIPAETFINDFLEHLRLGEMESFKRTYRSLDLLLIDDIQSLGGKKV 222 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N+L KQ+V +DR P L++L+ R+ +R + G++ + D+E R + Sbjct: 223 STQEEFFNTFNALHGDNKQIVLTSDRSPDHLDNLEERLVTRFKWGLTQNITPPDFETRIA 282 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAEI 392 IL+N + ED + L ++A ++ R+L+GA N L+ R +T + Sbjct: 283 ILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMARVKNLKEITIDA 337 Query: 393 ADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E + + I+ IQ V Y +S ++ +RRV+ +V RQVAMYL++ Sbjct: 338 AAEAIRARKQDASQILVIPIDKIQTEVGNFYGVSVKEMKGSRRVQNIVLARQVAMYLARE 397 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S P+IGR FG +DHTTV+HA K++ MLE D L+ E+E +K I Sbjct: 398 LTDNSLPKIGREFGGKDHTTVIHAHGKIKTMLEMDDNLRLEIENIKNKI 446 >gi|171316345|ref|ZP_02905565.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria MEX-5] gi|171098474|gb|EDT43276.1| chromosomal replication initiator protein DnaA [Burkholderia ambifaria MEX-5] Length = 525 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 209/390 (53%), Gaps = 17/390 (4%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + LPS+ ++ P + G + S S L+ F F+ G +N Sbjct: 150 IDLPSLPAHEAAAGRRTWRPGPGAAPAN----GGEGDSMYERSKLNPVLTFDNFVTGKAN 205 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ Sbjct: 206 QLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIH 260 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + Sbjct: 261 AEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKA 320 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + +N+ Sbjct: 321 QVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVNL 375 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 +E+V VA+ + ++ REL+GA +++ F ++ E+ E L L+ T + +++ + Sbjct: 376 SEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDLL-TVQNRQISV 434 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTT Sbjct: 435 ENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTT 494 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHAVRK+ D L E+ +L++ + Sbjct: 495 VLHAVRKIADERSKDAQLNHELHVLEQTLK 524 >gi|298369733|ref|ZP_06981050.1| DNA replication initiator protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282290|gb|EFI23778.1| DNA replication initiator protein [Neisseria sp. oral taxon 014 str. F0314] Length = 504 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 142/515 (27%), Positives = 238/515 (46%), Gaps = 58/515 (11%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + +L + + + +W L + + F ++NR+ Sbjct: 1 MTLAEFWPLCLRKLHDSLPAQQFQTWIAPLTVGE-ENGTWVVYGKNQFACNMLQNRFAAD 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTAS-----------SPSITKLSPINTNISKS 141 I + E + + + AS +P+ +P +N + + Sbjct: 60 IEAVRAELAPQQAAFLFKTGTGRSYPMASDASGKSLEERPSENTPAHPHTTPALSNKTAA 119 Query: 142 PIILGKQTISPVFG---------------------------------SPLDSRFVFSTFI 168 I+ + P + L S + F T + Sbjct: 120 DILAERMKNLPHGNRRTEPEPAPAAANPTAKTRLDEQRGAAETRYSQTNLSSDYTFETLV 179 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG NR+A AAQSIAE Y NP F++ S GLGKTHL+QAI N +K +P+ + Sbjct: 180 EGKGNRIAAAAAQSIAENPGQSY-----NPFFLYGSTGLGKTHLVQAIGNELLKNRPDAK 234 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 V Y+ ++ ++ F SA+R N K + DLL+IDD+QF++GK EF +L N Sbjct: 235 VRYMHSDDYIRSFMSAVRTNSYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHF 294 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E Sbjct: 295 HNEKKQLILTCDVLPAKIEDMDDRLKSRFSWGLTLELEPPELEMRVAILQK-----KAES 349 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGET 406 +++ +E +A + ++ REL+GAFN++ F + ++A + L ++ Sbjct: 350 SGISLTDEAAFFIANLIRSNVRELEGAFNRVSASSRFMNKPIDIDLARDALQDIIAVKH- 408 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 K + + I AK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG Sbjct: 409 KVITADIIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELTNLSLPSIGDAFGG 468 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTV+H V+ V K+ E D L ++ E L +I Sbjct: 469 RDHTTVMHGVKAVAKLREDDPELAQDYEKLLIMIQ 503 >gi|295675102|ref|YP_003603626.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1002] gi|295434945|gb|ADG14115.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1002] Length = 532 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 129/388 (33%), Positives = 211/388 (54%), Gaps = 17/388 (4%) Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 LPS++ ++ P + + ++ S S L+ F F+ G +N++ Sbjct: 159 LPSLDANEAAAGRRTWRPGQGAGAAA----TSESDSMYERSKLNPVLTFDNFVTGKANQL 214 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE Sbjct: 215 ARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLMDKPGARIRYIHAE 269 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV Sbjct: 270 QYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQV 329 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +D P E+ +D R+ SR G++V + + EMR +IL + + + +++NE Sbjct: 330 IITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEFVSLNE 384 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 +V VA+ + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+ Sbjct: 385 DVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVEN 443 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVL Sbjct: 444 IQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVL 503 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HAVRK+ D L E+ +L++ + Sbjct: 504 HAVRKIADERSKDAQLNHELHVLEQTLK 531 Score = 71.6 bits (174), Expect = 3e-10, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 34/82 (41%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NEFWQHCSALLERELTPQQYVTWIKPLAPVAFDADANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 + ++ V+ ++ A Sbjct: 62 ADMARDFWHAPVDVQFVLDPKA 83 >gi|332877991|ref|ZP_08445721.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683953|gb|EGJ56820.1| replication initiator protein DnaA [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 468 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 124/478 (25%), Positives = 231/478 (48%), Gaps = 17/478 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + +S++ ++N V Y +WF+ ++ S ++ +P+ + ++ + Sbjct: 1 MEGSAQSLWERCLPIIRNNVDEKQYRTWFEPIQTISFEKQVLTFGLPSQYFYEFLSEHFG 60 Query: 91 ETITKLFQEEHSR--IQGVEILVRSV--ALPSVEKTASSPSITKLSPINTNISKSPIILG 146 I + + ++V +E + P + T +++P L Sbjct: 61 RLIFSVVRRVFGEGTQLKYSLMVDQTHHLTVDIEPVNTQPLTPRAKIQATGSNRAPSPL- 119 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + + L+ + F FIEG SN++ + Q+IAE NPLFI+ + G Sbjct: 120 QAPMPQDLDPQLNRNYSFENFIEGVSNKLPRSVGQAIAEHPKQS----TFNPLFIYGASG 175 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 +GKTHL+ AI + P RV+Y++A F ++ ++R N + + + ID+L+ID Sbjct: 176 VGKTHLVNAIGAKIKELHPTKRVLYVSAHLFQVQYTDSVRKNTVNDFINFYQTIDVLIID 235 Query: 267 DMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q Q+ F H+ N L + +Q++ +DRPP+ L+ ++ R+ +R + G+ L Sbjct: 236 DVQEFASLTKTQNTFFHIFNHLHQNGRQLILTSDRPPTALQGMEERLLTRFKWGLLAELE 295 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 + ++R IL+N + L I EEV+ V+ V S REL+G N L+ + Sbjct: 296 KPNQQLRHDILEN-----KIRQDGLKIPEEVIDFVSENVNDSVRELEGIVNSLMAYSVVW 350 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + +A+++L V E K + I+ I V ++N+ + D+ + R + V + RQ+ Sbjct: 351 NRDIDLPLAEQILKRAVK-QENKPVTIDFILDKVCGYFNVKQEDVFTKCRKQPVAQVRQI 409 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 AMYL++ T S IG G R H TVLH+ VE L D K +++ +++L+ + Sbjct: 410 AMYLAQKHTNLSLARIGSLIGKRTHATVLHSCSVVEDRLHVDKAFKSKMDEIEKLLKQ 467 >gi|116617175|ref|YP_817546.1| chromosomal replication initiator protein DnaA [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227432906|ref|ZP_03914850.1| DNA-directed DNA replication initiator protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|116096022|gb|ABJ61173.1| DNA replication ATPase initiation [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|227351339|gb|EEJ41621.1| DNA-directed DNA replication initiator protein [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 448 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 143/473 (30%), Positives = 234/473 (49%), Gaps = 36/473 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E +++ V + ++G ++++ + LK ++ + L+VP++ + I E Sbjct: 5 ITKEELWSKVQAEFFTKLGRVTFSTYIEPLKPLTLGDTSLTLAVPSDMAQDIIDQWDSEY 64 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 Q S G P ++ + P+ I +S Sbjct: 65 SMDFVQFAMSIADGF-------IKPDLQVAEAKPTT--------------IPTFSDNLSF 103 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F F F+ GS N A A+++A+ Y NP I+ VGLGKTHL Sbjct: 104 TRESDLNPDFTFEKFVIGSGNENAYAVARAVADEPGQVY-----NPYLIYGGVGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQF 270 +QAI NA P+ + Y TAE F+ F ++R D K R++DLLL+DD+QF Sbjct: 159 MQAIGNAYAVSTPSAHIKYATAEDFLNDFTESLRAGDGATAAFKQEYRSVDLLLVDDIQF 218 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK +Q EF + N L + KQ+V +D+ P+E+ L R+ SR + G+ + + D Sbjct: 219 WSGKEKVQEEFFNTFNVLTKNGKQIVMTSDKLPTEIVDLQTRLTSRFEAGIMMDIQKPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 R +IL+N E L+I +VL +A + ++ R L+GAF++ + Sbjct: 279 PTRVAILQNL-----SESDGLDIPNDVLELIAEKIDSNVRSLEGAFHKFEASLRYMNKPA 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A ++L L N + K+ +E IQ++VA +Y + +DL S+ R + +V R VAMYL Sbjct: 334 TKETAQQILGDL-NINQGFKITVERIQQVVADYYMQTIDDLKSSSRKKDLVTARHVAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IGR FG RDH++VLHA K+ + E+D K+ ++ L I Sbjct: 393 TRTLTNESLPDIGRSFGGRDHSSVLHATTKITEKSESDSRTKEMLDALTDEIK 445 >gi|296875521|ref|ZP_06899593.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 15912] gi|296433445|gb|EFH19220.1| DNA-directed DNA replication initiator protein [Streptococcus parasanguinis ATCC 15912] Length = 452 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 140/471 (29%), Positives = 235/471 (49%), Gaps = 28/471 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E +T + Q+ Y + K + + + N+ + + + + Sbjct: 5 EQFWTRFLELAQLQLKDSAYDFFVADSKLVKIDGETATIYLDGNYKELFWETNLKNALIT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E ++ + + +E+ +S S + +++ P+ P Sbjct: 65 ASFEVYNTDLKFQFI-----FEDLEELPNSHSSENRRLSSGSLTTEPL--------PKID 111 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 112 TGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ PN RV Y+ AE F+ F +R K++ R++DLLLIDD+Q L GK Sbjct: 167 IGNQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSLGGKK 226 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L+SL+ R+ +R + G++ + D+E R Sbjct: 227 VTTQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRI 286 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + ED + L ++A ++ R+L+GA N L+ + +T + Sbjct: 287 AILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKEITID 341 Query: 392 IADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E + N + IE IQ V Y +S ++ +RRV+ +V RQVAMYLS+ Sbjct: 342 VAAEAIRARKNDSSQMLVIPIEKIQEAVGAFYGVSVKEIKGSRRVQNIVLARQVAMYLSR 401 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P IG+ FG +DHTTV+HA K++ M++TD L+ E++ +K+ ++ Sbjct: 402 EMTDNSLPRIGKEFGGKDHTTVIHAYEKIKSMVDTDDNLRLEIQSIKKKLN 452 >gi|206558825|ref|YP_002229585.1| chromosomal replication initiation protein [Burkholderia cenocepacia J2315] gi|226735787|sp|B4E7D1|DNAA_BURCJ RecName: Full=Chromosomal replication initiator protein DnaA gi|198034862|emb|CAR50734.1| chromosomal replication initiator protein DnaA [Burkholderia cenocepacia J2315] Length = 525 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 209/390 (53%), Gaps = 17/390 (4%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + LPS+ ++ P + G + S S L+ F F+ G +N Sbjct: 150 IDLPSLPAHEAAAGRRTWRPGPGAAPAN----GGEADSMYERSKLNPVLTFDNFVTGKAN 205 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ Sbjct: 206 QLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIH 260 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + Sbjct: 261 AEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKA 320 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + +N+ Sbjct: 321 QVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVNL 375 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 +E+V VA+ + ++ REL+GA +++ F ++ E+ E L L+ T + +++ + Sbjct: 376 SEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDLL-TVQNRQISV 434 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTT Sbjct: 435 ENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTT 494 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHAVRK+ D L E+ +L++ + Sbjct: 495 VLHAVRKIADERSKDAQLNHELHVLEQTLK 524 Score = 73.5 bits (179), Expect = 7e-11, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDASANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 L +E + V+ ++ A Sbjct: 62 ADLAREFWNTPIEVQFVLDPKA 83 >gi|312866847|ref|ZP_07727060.1| chromosomal replication initiator protein DnaA [Streptococcus parasanguinis F0405] gi|311097630|gb|EFQ55861.1| chromosomal replication initiator protein DnaA [Streptococcus parasanguinis F0405] Length = 452 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 139/471 (29%), Positives = 233/471 (49%), Gaps = 28/471 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E ++ + Q+ Y + K + + + N+ + + + + Sbjct: 5 EQFWSRFLELAQLQLKDSAYDFFVADSKLVKIDGETATIYLDGNYKELFWETNLKNALIT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E ++ + E+ S+ S + +++ P+ P Sbjct: 65 ASFEVYNTDLKFHFV-----FEDTEEIPSNHSSENRRLSSGSLTTEPL--------PKID 111 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L S++ F F++G N A AA +++E + Y NPLFI+ GLGKTHLL A Sbjct: 112 TGLKSKYTFDNFVQGDGNIWAKAAALAVSENLATTY-----NPLFIYGGPGLGKTHLLNA 166 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N ++ PN RV Y+ AE F+ F +R K++ R++DLLLIDD+Q L GK Sbjct: 167 IGNQILENIPNARVKYVPAETFINEFLEHLRLGEMKTFKNTYRSLDLLLIDDIQSLGGKK 226 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N+L KQ+V +DR P L+SL+ R+ +R + G++ + D+E R Sbjct: 227 VTTQEEFFNTFNALHSDNKQIVLTSDRSPDHLDSLEERLVTRFKWGLTQNITPPDFETRI 286 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAE 391 +IL+N + ED + L ++A ++ R+L+GA N L+ + +T + Sbjct: 287 AILRN-----KIEDLDYIFPNDTLEYLAGQFDSNVRDLEGALNDISLMAKVKKLKEITID 341 Query: 392 IADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A E + N + IE IQ V Y +S ++ +RRV+ +V RQVAMYLS+ Sbjct: 342 VAAEAIRARKNDNSKTLVIPIEKIQEAVGAFYGVSVKEIKGSRRVQNIVLARQVAMYLSR 401 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P IG+ FG +DHTTV+HA K++ M++TD L+ E++ +K+ ++ Sbjct: 402 EMTDNSLPRIGKEFGGKDHTTVIHAYEKIKSMVDTDDNLRLEIQSIKKKLN 452 >gi|167834929|ref|ZP_02461812.1| chromosomal replication initiation protein [Burkholderia thailandensis MSMB43] Length = 412 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 42 PSLTAHEAAAGRRTWRPGAASANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 101 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 102 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 156 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 157 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 216 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 217 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 271 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 272 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 330 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 331 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 390 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 391 DERGKDAQLNHELHVLEQTLK 411 >gi|31791178|ref|NP_853671.1| chromosomal replication initiation protein [Mycobacterium bovis AF2122/97] gi|32700077|sp|P49991|DNAA_MYCBO RecName: Full=Chromosomal replication initiator protein DnaA gi|31616763|emb|CAD92863.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycobacterium bovis AF2122/97] Length = 507 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 132/482 (27%), Positives = 235/482 (48%), Gaps = 35/482 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 + L + P +W ++ +++ LSVP++F++ I+ IT Sbjct: 34 ANLSAPLTPQQ-RAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGH 92 Query: 104 IQGVEILVRSVA--------LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + A +P E A++ T + S + + + F Sbjct: 93 QIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFT 152 Query: 156 -------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ R+ F TF+ G+SNR A + NPLFI Sbjct: 153 ERPRNTDSATAGVTSLNRRYTFDTFVIGASNRF-----AHAAALAIAEAPARAYNPLFIW 207 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+ Sbjct: 208 GESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDV 267 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ Sbjct: 268 LLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 327 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + E R +IL+ + + +L I ++VL +A ++ + REL+GA ++ Sbjct: 328 TDVQPPELETRIAILRK-----KAQMERLAIPDDVLELIASSIERNIRELEGALIRVTAF 382 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + +A+ +L L+ T ++ I A++++ + +L + R + + Sbjct: 383 ASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQ 442 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL + +T S P+IG+ FG RDHTTV++A RK+ + + V+ L I Sbjct: 443 SRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRI 501 Query: 501 SE 502 + Sbjct: 502 RQ 503 >gi|162147555|ref|YP_001602016.1| chromosomal replication initiator protein dnaA [Gluconacetobacter diazotrophicus PAl 5] gi|161786132|emb|CAP55714.1| putative chromosomal replication initiator protein dnaA [Gluconacetobacter diazotrophicus PAl 5] Length = 487 Score = 405 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 157/421 (37%), Positives = 250/421 (59%), Gaps = 15/421 (3%) Query: 82 KAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS 141 + W++ +Y + ++ L+ E I+ VE+ V + + + T Sbjct: 78 RDWVRTQYGDRLSALWNAELPAIRRVELQVGRPEGAADGAAPALADPPVAATPATAAIVG 137 Query: 142 PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 + + +PLD RF F TF+ G N A A+ +AE S + NPLF+ Sbjct: 138 DERVPENRND--LAAPLDPRFTFDTFVVGKPNEFAYACARRVAERPS----SPGFNPLFL 191 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNID 261 + VGLGKTHL+ AI + + R + V Y++AE FM+RF +AIR + K+ LR++D Sbjct: 192 YGGVGLGKTHLMHAIGSE-LVRGGAVSVAYMSAEKFMYRFIAAIRSQSTMEFKEQLRSVD 250 Query: 262 LLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 +L+IDD+QFL GK Q EF H N+L+D+ +Q+V +AD+ PS+L L+ R+R+RL G+ Sbjct: 251 VLMIDDLQFLIGKDNTQEEFFHTFNALVDAGRQIVVSADKSPSDLSGLEDRLRTRLGCGM 310 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + +E+R SIL+++ A S + + +VL +A +T++ REL+GA N+L+ Sbjct: 311 VADIHATTFELRISILESKAAAS-----GVAVPAKVLEFLAHKITSNVRELEGALNRLIA 365 Query: 381 RHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + F +T E ++L ++ +++ IE+IQR V++H+NI D+ S RR R V Sbjct: 366 HANLFGRPVTLEATQDVLHDILK-AHDRRVTIEEIQRKVSEHWNIRLTDMSSARRARAVA 424 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 RPRQVAMYL+K +T RS PEIGR+FG+RDHTTV+HAV +V +++E D ++VELL+R+ Sbjct: 425 RPRQVAMYLAKQLTSRSLPEIGRKFGNRDHTTVMHAVARVTELMERDTAFAEDVELLRRM 484 Query: 500 I 500 + Sbjct: 485 L 485 >gi|15607143|ref|NP_214515.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Rv] gi|15839373|ref|NP_334410.1| chromosomal replication initiation protein [Mycobacterium tuberculosis CDC1551] gi|148659758|ref|YP_001281281.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] gi|148821192|ref|YP_001285946.1| chromosomal replication initiation protein [Mycobacterium tuberculosis F11] gi|167969464|ref|ZP_02551741.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] gi|215405983|ref|ZP_03418164.1| chromosomal replication initiation protein [Mycobacterium tuberculosis 02_1987] gi|215413853|ref|ZP_03422518.1| chromosomal replication initiation protein [Mycobacterium tuberculosis 94_M4241A] gi|215425187|ref|ZP_03423106.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T92] gi|215432906|ref|ZP_03430825.1| chromosomal replication initiation protein [Mycobacterium tuberculosis EAS054] gi|215448272|ref|ZP_03435024.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T85] gi|218755717|ref|ZP_03534513.1| chromosomal replication initiation protein [Mycobacterium tuberculosis GM 1503] gi|219555772|ref|ZP_03534848.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T17] gi|253796916|ref|YP_003029917.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 1435] gi|254366461|ref|ZP_04982505.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis str. Haarlem] gi|254548929|ref|ZP_05139376.1| chromosomal replication initiation protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260184854|ref|ZP_05762328.1| chromosomal replication initiation protein [Mycobacterium tuberculosis CPHL_A] gi|260198985|ref|ZP_05766476.1| chromosomal replication initiation protein [Mycobacterium tuberculosis T46] gi|260203138|ref|ZP_05770629.1| chromosomal replication initiation protein [Mycobacterium tuberculosis K85] gi|289441368|ref|ZP_06431112.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis T46] gi|289445526|ref|ZP_06435270.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CPHL_A] gi|289552251|ref|ZP_06441461.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 605] gi|289567883|ref|ZP_06448110.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T17] gi|289572577|ref|ZP_06452804.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis K85] gi|289747769|ref|ZP_06507147.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis 02_1987] gi|289748463|ref|ZP_06507841.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T92] gi|289756060|ref|ZP_06515438.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis EAS054] gi|289760098|ref|ZP_06519476.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289764116|ref|ZP_06523494.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis GM 1503] gi|294995607|ref|ZP_06801298.1| chromosomal replication initiation protein [Mycobacterium tuberculosis 210] gi|297632469|ref|ZP_06950249.1| chromosomal replication initiation protein [Mycobacterium tuberculosis KZN 4207] gi|297729438|ref|ZP_06958556.1| chromosomal replication initiation protein [Mycobacterium tuberculosis KZN R506] gi|298527397|ref|ZP_07014806.1| dnaA [Mycobacterium tuberculosis 94_M4241A] gi|306795595|ref|ZP_07433897.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu006] gi|306801570|ref|ZP_07438238.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu008] gi|306805779|ref|ZP_07442447.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu007] gi|307086727|ref|ZP_07495840.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu012] gi|313656767|ref|ZP_07813647.1| chromosomal replication initiation protein [Mycobacterium tuberculosis KZN V2475] gi|3123213|sp|P49993|DNAA_MYCTU RecName: Full=Chromosomal replication initiator protein DnaA gi|166214683|sp|A5TY69|DNAA_MYCTA RecName: Full=Chromosomal replication initiator protein DnaA gi|1321904|emb|CAA63257.1| dnaA [Mycobacterium tuberculosis H37Rv] gi|2808711|emb|CAA16238.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN DNAA [Mycobacterium tuberculosis H37Rv] gi|13879042|gb|AAK44224.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CDC1551] gi|134151973|gb|EBA44018.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis str. Haarlem] gi|148503910|gb|ABQ71719.1| chromosomal replication initiation protein [Mycobacterium tuberculosis H37Ra] gi|148719719|gb|ABR04344.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis F11] gi|253318419|gb|ACT23022.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 1435] gi|289414287|gb|EFD11527.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis T46] gi|289418484|gb|EFD15685.1| chromosomal replication initiator protein DnaA [Mycobacterium tuberculosis CPHL_A] gi|289436883|gb|EFD19376.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 605] gi|289537008|gb|EFD41586.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis K85] gi|289541636|gb|EFD45285.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T17] gi|289688297|gb|EFD55785.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis 02_1987] gi|289689050|gb|EFD56479.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis T92] gi|289696647|gb|EFD64076.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis EAS054] gi|289711622|gb|EFD75638.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis GM 1503] gi|289715662|gb|EFD79674.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298497191|gb|EFI32485.1| dnaA [Mycobacterium tuberculosis 94_M4241A] gi|308343891|gb|EFP32742.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu006] gi|308347675|gb|EFP36526.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu007] gi|308351593|gb|EFP40444.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu008] gi|308363877|gb|EFP52728.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu012] gi|323717340|gb|EGB26545.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis CDC1551A] gi|326905758|gb|EGE52691.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis W-148] gi|328456707|gb|AEB02130.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis KZN 4207] Length = 507 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 131/482 (27%), Positives = 235/482 (48%), Gaps = 35/482 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 + L + P +W ++ +++ LSVP++F++ I+ IT Sbjct: 34 ANLSAPLTPQQ-RAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGH 92 Query: 104 IQGVEILVRSVA--------LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + A +P E A++ T + S + + + F Sbjct: 93 QIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFT 152 Query: 156 -------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ R+ F TF+ G+SNR A + NPLFI Sbjct: 153 ERPHNTDSATAGVTSLNRRYTFDTFVIGASNRF-----AHAAALAIAEAPARAYNPLFIW 207 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+ Sbjct: 208 GESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDV 267 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ Sbjct: 268 LLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 327 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + E R +IL+ + + +L + ++VL +A ++ + REL+GA ++ Sbjct: 328 TDVQPPELETRIAILRK-----KAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAF 382 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + +A+ +L L+ T ++ I A++++ + +L + R + + Sbjct: 383 ASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQ 442 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL + +T S P+IG+ FG RDHTTV++A RK+ + + V+ L I Sbjct: 443 SRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRI 501 Query: 501 SE 502 + Sbjct: 502 RQ 503 >gi|326383909|ref|ZP_08205593.1| chromosomal replication initiation protein [Gordonia neofelifaecis NRRL B-59395] gi|326197368|gb|EGD54558.1| chromosomal replication initiation protein [Gordonia neofelifaecis NRRL B-59395] Length = 539 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 135/395 (34%), Positives = 217/395 (54%), Gaps = 16/395 (4%) Query: 113 SVALPSVEKTASSPSITKLSPINTNISK--SPIILGKQTISPVFGSP-LDSRFVFSTFIE 169 S A+PS E+ A+ P + S ++T +P G+ L ++ F TF+ Sbjct: 152 SPAIPSDEQLAALNYQQPAPPTRPVEPREWSTYFEQRETSAPDNGTTSLHPKYTFDTFVI 211 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G+SNR A +A ++AE + Y NP+FI GLGKTHLL A + S + P +RV Sbjct: 212 GASNRFAHASAVAVAENPARAY-----NPMFIWGESGLGKTHLLHAAGHYSQRLFPGMRV 266 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLL 288 Y++ E F F +++RD+ + K R+ID+LLIDD+QFL+GK IQ EF H N+L Sbjct: 267 KYVSTEEFTNDFINSLRDDRRVAFKRRYRDIDMLLIDDIQFLEGKEGIQEEFFHTFNTLH 326 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + D E R +IL+ + + Sbjct: 327 NANKQIVVSSDRPPKQLATLEDRLRTRFEWGLITDVQPPDLETRIAILRK-----KAQMD 381 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETK 407 KL ++VL +A + + REL+GA ++ S L +A+ +L L+ Sbjct: 382 KLAAPDDVLELIASKIERNIRELEGALIRVTAFASLNNTELDTTLAEVVLKALIPDSGPM 441 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 + I + A Y++S +DL +VR + PRQ++MYL + +T S P+IG F DR Sbjct: 442 DVSAASIVAVTADFYDLSVDDLCGPSKVRALTLPRQISMYLCRELTDLSLPKIGETF-DR 500 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 DHTTV+HA +K+ K + + + +V+ L I + Sbjct: 501 DHTTVMHADKKIRKEMHENRNIYDQVQELTARIKQ 535 Score = 46.6 bits (109), Expect = 0.011, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 37/119 (31%), Gaps = 9/119 (7%) Query: 36 ESIFTIVSSRLKNQ--------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 I+ V + L ++ + +W ++ ++ L+VPT ++ I+ Sbjct: 9 SDIWNAVVADLSSEGGAAEAEPLTRQQ-KAWLSLVRPLTMTEGFALLAVPTPLVQEQIER 67 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 + + + + + V + + + P + S + + Sbjct: 68 NLRDAVRLTLSRHLGQSVDIAVRVAEPEEIAPQPVDGAGVTGDAYPHPSAASATKVTSD 126 >gi|121635884|ref|YP_976107.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635911|ref|YP_976134.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988384|ref|YP_002643051.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Tokyo 172] gi|254777908|sp|C1AIZ8|DNAA_MYCBT RecName: Full=Chromosomal replication initiator protein DnaA gi|121491531|emb|CAL69985.1| chromosomal replication initiation protein dnaA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491558|emb|CAL70015.1| Chromosomal replication initiator protein dnaA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771497|dbj|BAH24303.1| chromosomal replication initiation protein [Mycobacterium bovis BCG str. Tokyo 172] Length = 507 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 131/482 (27%), Positives = 235/482 (48%), Gaps = 35/482 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 + L + P +W ++ +++ LSVP++F++ I+ IT Sbjct: 34 ANLSAPLTPQQ-RAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGH 92 Query: 104 IQGVEILVRSVA--------LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + A +P E A++ T + S + + + F Sbjct: 93 QIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFT 152 Query: 156 -------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ R+ F TF+ G+SNR A + NPLFI Sbjct: 153 ERPRNTDSATAGVTSLNRRYTFDTFVIGASNRF-----AHAAALAIAEAPARAYNPLFIW 207 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+ Sbjct: 208 GESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDV 267 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ Sbjct: 268 LLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 327 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + E R +IL+ + + +L + ++VL +A ++ + REL+GA ++ Sbjct: 328 TDVQPPELETRIAILRK-----KAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAF 382 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + +A+ +L L+ T ++ I A++++ + +L + R + + Sbjct: 383 ASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQ 442 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL + +T S P+IG+ FG RDHTTV++A RK+ + + V+ L I Sbjct: 443 SRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRI 501 Query: 501 SE 502 + Sbjct: 502 RQ 503 >gi|270291828|ref|ZP_06198043.1| replication initiation protein DnaA [Streptococcus sp. M143] gi|270279356|gb|EFA25198.1| replication initiation protein DnaA [Streptococcus sp. M143] Length = 453 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 137/474 (28%), Positives = 234/474 (49%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + V N+ + +P + ++ + + Sbjct: 1 MKEKQFWNQILELAQERLTRSMYDFYATPAELIKVEGNVATIFLP----RPEMEMVWKKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + EI + V E++++ +++ S + P Sbjct: 57 LKDIIVAAGFEVYDTEIKTQFVLTKPEEESST-------YVMDSENSNHYVASQANLAIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A +AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSETGLKEKYTFDNFIQGDGNIWAKSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K P RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPEARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L + KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNALHSNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E N + L ++A ++ REL+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLDYNFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNT-GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + + I+ IQ V Y +S ++ RRV+ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVSQLLVIPIDKIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIEAIKKKIK 453 >gi|256389233|ref|YP_003110797.1| chromosomal replication initiator protein DnaA [Catenulispora acidiphila DSM 44928] gi|256355459|gb|ACU68956.1| chromosomal replication initiator protein DnaA [Catenulispora acidiphila DSM 44928] Length = 570 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 132/391 (33%), Positives = 209/391 (53%), Gaps = 17/391 (4%) Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-----LDSRFVFSTFIEGSSN 173 S P+ + PI +S S G ++ +P G+ L+ ++VF TF+ GSSN Sbjct: 188 PPPRVSEPAPEENDPIAATLSLSTGRPGARSSTPDDGAKAQQAKLNEKYVFETFVIGSSN 247 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A V NPLFI+ GLGKTHLL AI + + P RV Y++ Sbjct: 248 RF-----AHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYARNLYPGTRVRYVS 302 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAK 292 E F F +AIRD +L+ R++D+L++DD+QFL+ K Q EF H N+L +++K Sbjct: 303 TEEFTNDFINAIRDGAGNHLRKRYRDVDILMVDDIQFLENKEGTQEEFFHTFNTLHNASK 362 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V ++DRPP +L +L+ R+RSR + G+ + + E R +IL+ + + LN Sbjct: 363 QIVISSDRPPKQLNTLEDRLRSRFEWGLITDIQPPELETRIAILRK-----KAQQEGLNA 417 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRI 411 EVL +A ++T+ REL+GA ++ S + +A+++L +L+ ++ + Sbjct: 418 PPEVLEFIASKISTNIRELEGALIRVTAFASLNRAPVDLSLAEDVLKNLMPDAAGPEITV 477 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 I A ++ I+ DL R R +V RQ+AMYL + +T S P+IG+ FG RDHTT Sbjct: 478 STIMAQTAMYFGITMEDLCGTSRSRILVTARQIAMYLCRELTDLSLPKIGQAFGGRDHTT 537 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLISE 502 V+HA RK+ +L + +V L I + Sbjct: 538 VMHADRKIRSLLPERRAIFNQVTELTNRIKQ 568 Score = 36.6 bits (83), Expect = 9.6, Method: Composition-based stats. Identities = 10/82 (12%), Positives = 32/82 (39%), Gaps = 7/82 (8%) Query: 37 SIFTIVSSRLKNQVG----PDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++++ +R+++ + + +V+ + + L+VP +F K +++ R Sbjct: 40 ALWSHFRARVESDSSLTKSEQAFLM-IP--EARTVIGDTIVLAVPDDFSKNYLEQRLEPM 96 Query: 93 ITKLFQEEHSRIQGVEILVRSV 114 +T + V + Sbjct: 97 LTTHLAAMFGPDIKFSLFVDKI 118 >gi|330813297|ref|YP_004357536.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] gi|327486392|gb|AEA80797.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. IMCC9063] Length = 465 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 160/470 (34%), Positives = 265/470 (56%), Gaps = 23/470 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + ++ V ++LK G DV+ SW Q ++ V N + L V T F++ WI + Y + I Sbjct: 12 DLKKNWSDVQNKLKEIYGLDVFKSWIQNVEAKEVKLNSLTLIVKTRFIRDWIVSHYADKI 71 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 FQ+ S + ++ + S + K N ++ + S Sbjct: 72 LDFFQKLDSSVTRIQFEIH-----------ESFYVDKKISTNVVDFETGTQVIDNKDSSY 120 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + +D R FS ++ G SN++ +AA+ ++E H NPLFI+ SVGLGKTH+L Sbjct: 121 ASNRIDHRLTFSNYVVGESNQLVFSAAKRVSESLGH------YNPLFIYGSVGLGKTHIL 174 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N K + +++YL+AE FM++F +I++ KD RN D+L++DD+QF+ G Sbjct: 175 NAIGNELKKT--DKKIIYLSAERFMYQFVKSIKNKDTQKFKDVFRNADVLILDDIQFISG 232 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF + NSL+++ QV+ + DR P++L+ + RI+SRL GG+ V + D +R Sbjct: 233 KEVTQEEFFYTFNSLVENQSQVIVSCDRSPNDLDRIQDRIKSRLSGGLVVDIQPPDIALR 292 Query: 333 FSILKNRLAISQKEDPK-LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 ILKNR + K + I++E+L +A +S R++ G N+++ + T Sbjct: 293 LQILKNRCKTEETYFGKEVLISDEILSFIANEFKSSIRDMLGVLNRIIASSRIQNKVPTL 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + A +L L++ ++ + +EDIQ++V +YN+ D LS+RR R + RPRQVAMYL+K Sbjct: 353 QDARLILKDLLSNMQS-VVTVEDIQKLVVHYYNLPMTDFLSSRRSRHIARPRQVAMYLAK 411 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T +S PEIGR+F RDHTTV+HA++K+E+++ D + EV+ + I Sbjct: 412 KLTTKSLPEIGRKFTGRDHTTVIHAIKKIEELMNADKKFEYEVQDISNKI 461 >gi|229826864|ref|ZP_04452933.1| hypothetical protein GCWU000182_02248 [Abiotrophia defectiva ATCC 49176] gi|229788482|gb|EEP24596.1| hypothetical protein GCWU000182_02248 [Abiotrophia defectiva ATCC 49176] Length = 457 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 137/487 (28%), Positives = 241/487 (49%), Gaps = 47/487 (9%) Query: 31 LEVNCESIFTIVSSRLKN--QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK---AWI 85 ++ + + LKN ++ P ++ ++ + LK + N V + + + + ++I Sbjct: 1 MKQLVSENWDSILEMLKNDFEIKPVIFTTFIKPLKVYDEDDNNVTILLDDDVYQHNDSYI 60 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 K +Y I + + ++ + + + + Sbjct: 61 KGKYHTFIKNSIEAVTGKSYNLKFISKE---------------------ELDSYNTEKSE 99 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 Q + L+ + F TF+ G +NR+ AA S+AE NPLFI+ V Sbjct: 100 NNQLRERAASANLNPNYTFDTFVVGDNNRLVTAAAISVAENPG-----TNWNPLFIYGGV 154 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN--CALNLKDSLRNIDLL 263 GLGKTHL+ +IA+ ++ Q + RV+Y+T+E F AI++ + + RNID L Sbjct: 155 GLGKTHLMHSIAHYILENQADARVLYVTSEQFTNEVIEAIKEGVLASKEFRKKYRNIDAL 214 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 LIDD+QF+ GK + EF H N L + K+++ ++DRPP + ++ RI+SR G+ Sbjct: 215 LIDDIQFVIGKERTEEEFFHTFNELYQAGKRIIISSDRPPKDFTDIEDRIKSRFGSGMLS 274 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + DYE R +ILK R + + N+++E+L ++A V ++ REL+GA+ ++ + Sbjct: 275 EINPPDYETRMAILKKRCELENE-----NLSDEILDYIATNVNSNIRELEGAYKKVTALN 329 Query: 383 SF---APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 T +IA L ++N + I+ I +VA HY +S + L S R V Sbjct: 330 KLVNVNTEATLDIAKNALKDIINPNTKNVITIDSIIDVVASHYELSIDQLCSTNRSNNVA 389 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI-----TLKKEVE 494 PRQ+ MYL K +TP S EI + G +DH+TV+H ++K+E+ LE + L +++ Sbjct: 390 YPRQIIMYLCKQLTPASLKEIASKLGKKDHSTVVHGIKKIEEDLEAEKKANKNDLSNKLD 449 Query: 495 LLKRLIS 501 ++ +LIS Sbjct: 450 VITKLIS 456 >gi|134294129|ref|YP_001117864.1| chromosomal replication initiation protein [Burkholderia vietnamiensis G4] gi|166201869|sp|A4J9S6|DNAA_BURVG RecName: Full=Chromosomal replication initiator protein DnaA gi|134137286|gb|ABO53029.1| chromosomal replication initiator protein DnaA [Burkholderia vietnamiensis G4] Length = 525 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 208/390 (53%), Gaps = 17/390 (4%) Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 + LPS+ ++ P + G + S S L+ F F+ G +N Sbjct: 150 IDLPSLPAHEAAAGRRTWRPGPGAAPAN----GAEADSMYERSKLNPVLTFDNFVTGKAN 205 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 ++A AA +A Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ Sbjct: 206 QLARAAAIQVAHNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIH 260 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 AE ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + Sbjct: 261 AEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKA 320 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 QV+ +D P E+ +D R+ SR G++V + + EMR +IL + + + +N+ Sbjct: 321 QVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVNL 375 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRI 411 +E+V VA+ + ++ REL+GA +++ F ++ E+ E L L+ T + +++ + Sbjct: 376 SEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIELTKEALKDLL-TVQNRQISV 434 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTT Sbjct: 435 ENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTT 494 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VLHAVRK+ D L E+ +L++ + Sbjct: 495 VLHAVRKIADERGKDAQLNHELHVLEQTLK 524 >gi|9845531|gb|AAB38528.2| chromosomal replication initiator protein [Mycobacterium tuberculosis] Length = 507 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 130/482 (26%), Positives = 235/482 (48%), Gaps = 35/482 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 + L + P +W ++ +++ LSVP++F++ I+ IT Sbjct: 34 ANLSAPLTPQQ-RAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGH 92 Query: 104 IQGVEILVRSVA--------LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + A +P E A++ T + S + + + F Sbjct: 93 QIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFT 152 Query: 156 -------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ R+ F TF+ G+SNR A + NPLFI Sbjct: 153 ERPHNTDSATAGVTSLNRRYTFDTFVIGASNRF-----AHAAALAIAEAPARAYNPLFIW 207 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+ Sbjct: 208 GESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDV 267 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ Sbjct: 268 LLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 327 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + E R +IL+ + + +L + ++VL +A ++ + REL+GA ++ Sbjct: 328 TDVQPPELETRIAILRK-----KAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAF 382 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + +A+ +L L+ T ++ I A++++ + +L + R + + Sbjct: 383 ASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQ 442 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+A+YL + +T S P+IG+ FG RDHTTV++A RK+ + + V+ L I Sbjct: 443 SRQIAVYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRI 501 Query: 501 SE 502 + Sbjct: 502 RQ 503 >gi|34556459|ref|NP_906274.1| chromosomal replication initiation protein [Wolinella succinogenes DSM 1740] gi|61212685|sp|Q7MSY2|DNAA_WOLSU RecName: Full=Chromosomal replication initiator protein DnaA gi|34482173|emb|CAE09174.1| dnaA, probable chromosomal replication initiator protein [Wolinella succinogenes] Length = 437 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 121/466 (25%), Positives = 231/466 (49%), Gaps = 39/466 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 +LK+++ Y + ++L++ ++ P F+ W+K +Y E + LF Sbjct: 4 DTTLKQLKDEISTLEYERYIKQLRYDEEASRTDLAVYIAPNQFIANWVKTKYGERLAHLF 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + +EI + S+ + ++ K+ + G+++ + Sbjct: 64 ELSTGIRPKIEIRLGSLK----------------KDVKSSSPKAGVSKGQKS------TI 101 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G+SNR A +Q++A+ Y NPL I+ GLGKTHLL +I Sbjct: 102 LNPSFTFDSFVVGNSNRFAYEVSQNVAKKQGIAY-----NPLLIYGGTGLGKTHLLNSIG 156 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N ++ V+Y+T+E F+ + IR+N +D R D LLIDD+QF GK I Sbjct: 157 NYNVA--KGKSVIYVTSEQFLNDYLYHIRNNTMDRFRDKYRACDYLLIDDVQFFGGKPQI 214 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L + KQ+V +D+ P ++ L+ R++SR + G+ + + E + +I+ Sbjct: 215 QEEFFHTFNELHNKNKQIVLTSDKTPKQIAGLEERLKSRFEWGMVSDIQPPELETKINII 274 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 K + E + ++ E++ ++A + + RE++G +L + +T + A Sbjct: 275 KKKC-----EFDGIYLSNEIISYIATNMDNNIREIEGIIIKLNAYANLMNQEITLQFAKN 329 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L + E + + +E+I +V+K N+ ++ S R + + R++ ++L++ +TP Sbjct: 330 VLKEQIKE-ERENITLENIIEVVSKELNVKPAEIKSKGRSKNIANARRIVIFLARTLTPN 388 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P + + FG +DH++V A++ V+ +E D K +E LK I Sbjct: 389 SMPSLAQFFGMKDHSSVSKAMKTVKTEIEEDANFKMVIEELKNKIK 434 >gi|254818679|ref|ZP_05223680.1| chromosomal replication initiation protein [Mycobacterium intracellulare ATCC 13950] Length = 511 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 132/482 (27%), Positives = 233/482 (48%), Gaps = 43/482 (8%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 + P +W ++ +++ LSVP++F++ I+ IT + +++ Sbjct: 40 LTPQQ-RAWLNLVRPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGQ--QIQL 96 Query: 110 LVRSVALPSVEKTASSPSITKLS-------------PINTNISKSPIILGKQTISPVF-- 154 VR P + A P + + G Q P + Sbjct: 97 GVRIAPPPDDVEDALIPPAEPFPGSDGSIPGDDAALDTDEPFENGEAVDGAQPGWPNYFT 156 Query: 155 ------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 G+ L+ R+ F TF+ G+SNR A + NPLFI Sbjct: 157 ERPHAIDPAVAAGTSLNRRYTFDTFVIGASNRF-----AHAAALAIAEAPARAYNPLFIW 211 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+ Sbjct: 212 GESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDV 271 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ Sbjct: 272 LLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 331 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + E R +IL+ + + +L + ++VL +A ++ + REL+GA ++ Sbjct: 332 TDVQPPELETRIAILRK-----KAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAF 386 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + +A+ +L L+ T ++ I A++++ + +L + R + + Sbjct: 387 ASLNKTPIDKALAEIVLRDLIADASTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQ 446 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL + +T S P+IG+ FG RDHTTV++A RK+ + + V+ L I Sbjct: 447 SRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRI 505 Query: 501 SE 502 + Sbjct: 506 RQ 507 >gi|297181712|gb|ADI17894.1| ATPase involved in DNA replication initiation [uncultured Chloroflexi bacterium HF0200_06I16] Length = 451 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 130/471 (27%), Positives = 237/471 (50%), Gaps = 26/471 (5%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E ++ V L+ Q+ + +W + + + + + P +F W++ R Sbjct: 3 ESTAREVWRAVLGDLQLQLPRPTFETWLKPTEGITYDDGVFVVEAPNSFAVEWLERR--- 59 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I + Q+ ++ G E+ ++ E A + L + +P + ++ Sbjct: 60 -IYQSLQKTLRKVTGQELELQLQVRSEGEFYAVEQTDVVLESAGSVTPTTPPLFEIRS-- 116 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + ++ F +F+ G SNR+AL+A+Q+++E Y NPL++H++ GLGKTH Sbjct: 117 ------FNPKYSFDSFVAGPSNRLALSASQTVSEFPGQSY-----NPLYLHSASGLGKTH 165 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LLQ+I R L V+Y+T+E F F +AIR+ + + R++ +LL+DD+QFL Sbjct: 166 LLQSIGKRCASR--GLSVLYVTSEQFTNEFITAIRNRTTEDFRRRYRSVQVLLLDDVQFL 223 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK F H N L +S QVV ++DR P L+S++ R+RSR +GG+ + D E Sbjct: 224 SGKEQTHEGFFHTFNELHNSGNQVVISSDRAPKALDSIEDRLRSRFEGGLIADIQPPDLE 283 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LT 389 R SIL ++ + ++N+ V+ +A+ + + REL+G+ N++V + +T Sbjct: 284 TRMSIL-----ANKAVELRVNLESNVIELIAKRIQRNVRELEGSLNRMVAYSQLMNVNIT 338 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E ++L+ + + + + + I VA Y +S DL++ R + V RQVAMYL Sbjct: 339 LESTLQILNEMAPETDARSIDPQHIFEQVAIFYALSVRDLMAKNRTKKVSLARQVAMYLL 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S ++GR G RDH+TV+H K+ + + +++++ +K I Sbjct: 399 IYELELSPTQVGRLLGGRDHSTVIHGAGKINGEVTENGKIRQDILAIKEAI 449 >gi|315497052|ref|YP_004085856.1| chromosomal replication initiator protein dnaa [Asticcacaulis excentricus CB 48] gi|315415064|gb|ADU11705.1| chromosomal replication initiator protein DnaA [Asticcacaulis excentricus CB 48] Length = 473 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 166/471 (35%), Positives = 251/471 (53%), Gaps = 12/471 (2%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E ++T V+S L++++G Y S+ L PT + + W L Sbjct: 10 IQPEMVWTKVASALRHELGEGPYNSYVAPSALRQNPLGDPVLVTPTLYARDWFARNALRR 69 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +L+ + + +E+ R+ + +P S N +P++ + ++ Sbjct: 70 ANELWAQHDPDHRSLELKSRAEFDDQSKSAPMTPVTRTDS--AENAPAAPVVSFQDAVAR 127 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 V G L R F TF+ G N A T ++ +A + NP+F H G GKTHL Sbjct: 128 VAG--LQERLTFETFVPGRGNEFAYTMSRQVA-----TWADGHFNPVFFHGPYGYGKTHL 180 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AIA + R+ + +VVYLTAE F F +++D KD LR+ DLLLIDD+ F+ Sbjct: 181 LNAIAWEAKARRQDAKVVYLTAEKFTSTFVKSLQDRSTAAFKDELRSADLLLIDDVHFIG 240 Query: 273 GKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q E H L +LL++ K+VV ADRPPS L ++ R+RS L G+ L + D + Sbjct: 241 GKTSSQEELFHTLTALLENNKRVVFTADRPPSHLNEIEARLRSHLSSGLVCALDVADQSL 300 Query: 332 RFSILKNRLAISQKEDPKLNINE-EVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILT 389 R I++ +L K + +VL +A V S REL+GA N L + LT Sbjct: 301 RMGIIERKLDQLAKRLGVAQKPQHDVLQFLADRVPGSIRELEGAVNTLAASAGARLGSLT 360 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 + A LL + +++ +++IQ++ A H+ + + DLLS RR R+V RPRQVAM+L Sbjct: 361 LDEAMALLQPNLKVSAERRVTVDEIQKLTADHFALKQADLLSERRTRSVARPRQVAMWLC 420 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K T RS+P+IGRRFG RDHTTVLHAV+KVE++L++D + K+VE L R + Sbjct: 421 KQHTTRSYPDIGRRFGGRDHTTVLHAVKKVEELLQSDEQIAKDVEALTRKL 471 >gi|221201814|ref|ZP_03574851.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2M] gi|221207680|ref|ZP_03580688.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2] gi|221172526|gb|EEE04965.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2] gi|221178234|gb|EEE10644.1| chromosomal replication initiator protein DnaA [Burkholderia multivorans CGD2M] Length = 524 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 124/349 (35%), Positives = 198/349 (56%), Gaps = 13/349 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKTHL+ Sbjct: 186 RSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIH 240 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 241 AIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGK 300 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR Sbjct: 301 SRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRV 360 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + + +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 361 AIL-----MRKAQSEGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIEL 415 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K + Sbjct: 416 TKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKEL 474 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 475 TQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 523 Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDASANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 L ++ + V+ ++ A Sbjct: 62 ADLARDFWNAPIEVQFVLDPKA 83 >gi|322392425|ref|ZP_08065885.1| DNA-directed DNA replication initiator protein [Streptococcus peroris ATCC 700780] gi|321144417|gb|EFX39818.1| DNA-directed DNA replication initiator protein [Streptococcus peroris ATCC 700780] Length = 452 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 233/474 (49%), Gaps = 27/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + K ++ ++ + + V N+ + +P ++ ++ + Sbjct: 1 MKEKQFWNQILELAKERLTRSMFDFYVTPAELIKVEENVATIFLP----RSEMEMVWSTK 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + +I EI + V ++ + + S + I P Sbjct: 57 LNDIIVAVGFQIYDTEIKAQYVLTKEDSDSSDITTTVENSSQQQEQTIKSI--------P 108 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ + F F++G N A +AA +++E + Y NPLFI+ GLGKTHL Sbjct: 109 YSETGLNKNYTFDNFVQGDGNIWAKSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K P+ RV Y+ AE F+ F +R K + RN+DLLLIDD+Q L Sbjct: 164 LNAIGNEILKNIPSARVKYIPAESFINDFLDHLRLGEMEKFKKTYRNLDLLLIDDIQSLS 223 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N L + KQ+V +DR P +LE ++ R+ +R G++ + D+E Sbjct: 224 GKKVATQEEFFNTFNDLHNKQKQIVLTSDRSPKQLEGMEERLVTRFSWGLTQAITPPDFE 283 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E+ N + L ++A ++ REL+GA N L+ R + Sbjct: 284 TRVAILQ-----SKTENLDYNFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKITDI 338 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + IE IQ V Y +S +L RRV+ +V RQVAMY Sbjct: 339 TIDIAAEAIRARKQDISQMLVIPIEKIQTEVGNFYGVSVKELKGTRRVQNIVLARQVAMY 398 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T S P+IG+ FG +DHTTV+HA K++ ++E D L+ E+E +K+ I Sbjct: 399 LARELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIEEDNNLRLEIEAIKKKIK 452 >gi|167900712|ref|ZP_02487917.1| chromosomal replication initiation protein [Burkholderia pseudomallei NCTC 13177] Length = 408 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 38 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 97 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 98 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 152 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 153 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 212 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 213 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 267 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 268 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 326 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 327 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 386 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 387 DERGKDAQLNHELHVLEQTLK 407 >gi|160889316|ref|ZP_02070319.1| hypothetical protein BACUNI_01739 [Bacteroides uniformis ATCC 8492] gi|270295909|ref|ZP_06202109.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D20] gi|317479651|ref|ZP_07938776.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_1_36] gi|156861323|gb|EDO54754.1| hypothetical protein BACUNI_01739 [Bacteroides uniformis ATCC 8492] gi|270273313|gb|EFA19175.1| chromosomal replication initiator protein DnaA [Bacteroides sp. D20] gi|316904216|gb|EFV26045.1| chromosomal replication initiator protein DnaA [Bacteroides sp. 4_1_36] Length = 461 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 120/473 (25%), Positives = 237/473 (50%), Gaps = 17/473 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E++ ++ +++ V Y +WF + + + VP+ F ++++++++ Sbjct: 3 EIDHVGLWNRCLEIIRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDKFVD 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + K + G +++ + S KT S + + I Q Sbjct: 63 LLRKTLYKVIGE--GTKLMYNVMVDKSSRKTVDLESTQRTIIPQKQVMDKRI---PQIPV 117 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P L+ + F TFIEG SN+++ + A+++A + NPLF++ + G+GKTH Sbjct: 118 PELDPHLNPEYNFETFIEGYSNKLSRSVAEAVALNPAK----TIFNPLFLYGASGVGKTH 173 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L AI + P RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q Sbjct: 174 LANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQEF 233 Query: 272 QG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E Sbjct: 234 AGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELEKPTVE 293 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 +R +IL+N + L +EV+ ++A V S R+L+G ++ + + + Sbjct: 294 LRKNILRN-----KIHRDGLQFPQEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKEID 348 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ ++ +VN+ E+K + +++I V KH+ + + + R R VV+ RQ+AMYL+ Sbjct: 349 LELTQRIVRKVVNS-ESKAVTVDEIINTVCKHFGLETATIHTKSRKREVVQARQIAMYLA 407 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K T S +IG G +DH TVLHA + ++++ E D + + E++ ++ + + Sbjct: 408 KNHTDFSTAKIGALIGHKDHATVLHACKTIKELKEVDKSFRAEIDEIQAALKK 460 >gi|296127870|ref|YP_003635120.1| chromosomal replication initiator protein DnaA [Cellulomonas flavigena DSM 20109] gi|296019685|gb|ADG72921.1| chromosomal replication initiator protein DnaA [Cellulomonas flavigena DSM 20109] Length = 534 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 123/396 (31%), Positives = 201/396 (50%), Gaps = 12/396 (3%) Query: 109 ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFI 168 L A + + P + S + L+ ++ F TF+ Sbjct: 145 FLRDQGADEDAALVTPAEQPVEARPSLRAVDGSSYDAPAPRRGLSEPARLNPKYRFETFV 204 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 GSSNR A V NPLFI+ GLGKTHLL AI + + P +R Sbjct: 205 IGSSNRF-----AHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQNLYPTVR 259 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSL 287 V Y+ +E F F ++I + A + R +D+LLIDD+QFLQGK EF H N+L Sbjct: 260 VRYVNSEEFTNDFINSIGEGKAGAFQRRYREVDVLLIDDIQFLQGKEQTMEEFFHTFNTL 319 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 +++KQVV +D PP +L + R+RSR + G+ + D E R +IL+ + A + Sbjct: 320 HNASKQVVITSDVPPKQLNGFEDRMRSRFEWGLITDVQPPDLETRIAILRKKAASER--- 376 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGET 406 L ++VL ++A ++T+ REL+GA ++ + ++ +A+ +L L++ +T Sbjct: 377 --LQAPDDVLEYIASRISTNIRELEGALIRVTAFANLNRQLVDVSLAEIVLKDLISDDQT 434 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 +++ + A ++ +S DL + R R +V RQ+AMYL + +T S P+IG+ FG Sbjct: 435 QEITATTVIGQTAAYFGLSIEDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGQAFGG 494 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 RDHTTV+HA RK+ +++ ++ +V L I + Sbjct: 495 RDHTTVMHANRKIRELMAERRSIYNQVTELTNRIKQ 530 >gi|145294043|ref|YP_001136864.1| chromosomal replication initiation protein [Corynebacterium glutamicum R] gi|166201881|sp|A4Q9R9|DNAA_CORGB RecName: Full=Chromosomal replication initiator protein DnaA gi|140843963|dbj|BAF52962.1| hypothetical protein [Corynebacterium glutamicum R] Length = 524 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 141/531 (26%), Positives = 238/531 (44%), Gaps = 72/531 (13%) Query: 31 LEVNCESI---FTIVSSRLKNQVGPDVYASWFQRL-----------KFHSVLHNIVHLSV 76 + N S+ + V + L + S F L K +++ LS Sbjct: 1 MSQNSSSLLETWRQVVADL-TTLSQQA-DSGFDPLTPTQRAYLNLTKPIAIVDGYAVLST 58 Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLS 132 P K I+N + +T++ R + + V P+ ++ P +S Sbjct: 59 PNAMAKNVIENDLGDALTRVLSLRMGRSFSLAVSVEPEQEIPETPAQQEFKYQPDAPVIS 118 Query: 133 ----------------------------------------PINTNISKSPIILGKQTISP 152 P + I +P Sbjct: 119 SNKAPKQYEVGGRGGASTSDGWERTHSAPAPEPHPAPIADPEPELATPQRIPRETPAHNP 178 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F +F+ G NR A AA ++AE + NPLFI GLGKTHL Sbjct: 179 NREVSLNPKYTFESFVIGPFNRFANAAAVAVAESPAKA-----FNPLFISGGSGLGKTHL 233 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + + QP LR+ Y+++E F + +++RD+ K RN+D+L++DD+QFL Sbjct: 234 LHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQETFKRRYRNLDILMVDDIQFLA 293 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E Sbjct: 294 GKEGTQEEFFHTFNALHQADKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLET 353 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + + +++ EVL +A +S REL+GA ++ S + Sbjct: 354 RIAIL-----MKKAQTDGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPIDK 408 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A L ++ E ++ I + A+++ IS + L + R V RQ+AMYL + Sbjct: 409 EMAIVALRDILPEPEDMEITAPVIMEVTAEYFEISVDTLRGAGKTRAVAHARQLAMYLCR 468 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG FG +DHTTV++A RK+ + + E++ L +LI Sbjct: 469 ELTDMSLPKIGDVFGGKDHTTVMYADRKIRQEMTEKRDTYDEIQQLTQLIK 519 >gi|167620899|ref|ZP_02389530.1| chromosomal replication initiation protein [Burkholderia thailandensis Bt4] Length = 401 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 31 PSLTAHEAAAGRRTWRPGAASANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 90 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 91 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 145 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 146 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 205 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 206 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 260 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 261 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 319 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 320 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 379 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 380 DERGKDAQLNHELHVLEQTLK 400 >gi|167582970|ref|ZP_02375844.1| chromosomal replication initiation protein [Burkholderia thailandensis TXDOH] Length = 392 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 22 PSLTAHEAAAGRRTWRPGAASANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 81 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 82 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 136 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 137 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 196 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 197 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 251 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 252 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 310 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 311 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 370 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 371 DERGKDAQLNHELHVLEQTLK 391 >gi|55820104|ref|YP_138546.1| chromosomal replication initiation protein [Streptococcus thermophilus LMG 18311] gi|55821994|ref|YP_140435.1| chromosomal replication initiation protein [Streptococcus thermophilus CNRZ1066] gi|116626973|ref|YP_819592.1| chromosomal replication initiation protein [Streptococcus thermophilus LMD-9] gi|71151807|sp|Q5M226|DNAA_STRT1 RecName: Full=Chromosomal replication initiator protein DnaA gi|71151808|sp|Q5M6L8|DNAA_STRT2 RecName: Full=Chromosomal replication initiator protein DnaA gi|122268421|sp|Q03N26|DNAA_STRTD RecName: Full=Chromosomal replication initiator protein DnaA gi|55736089|gb|AAV59731.1| chromosomal replication initiator protein dnaA [Streptococcus thermophilus LMG 18311] gi|55737979|gb|AAV61620.1| chromosomal replication initiator protein dnaA [Streptococcus thermophilus CNRZ1066] gi|116100250|gb|ABJ65396.1| ATPase involved in DNA replication initiation [Streptococcus thermophilus LMD-9] gi|312277419|gb|ADQ62076.1| Chromosomal replication initiator protein dnaA [Streptococcus thermophilus ND03] Length = 454 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 143/470 (30%), Positives = 231/470 (49%), Gaps = 29/470 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + K ++ + + K + N+ + + W KN + F Sbjct: 8 FWNKLLELAKEELTQATFDYYVLDTKLIKIQDNVATILLEEVKKLFWEKNMQSFILMTGF 67 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + +S I VE +++ P N S + P S Sbjct: 68 EVYNSEI-------------KVEYVFDEALVSETKPTLANNDFSNKREQQTPDLPTLNSD 114 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F FI+G NR ++ A+ ++A+ Y NPLFI+ GLGKTHLL AI Sbjct: 115 LNSKYTFDNFIQGDENRWSVAASLAVADSPGATY-----NPLFIYGGPGLGKTHLLNAIG 169 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 N + P R+ Y+TAE F+ F IR + LK R++D+LLIDD+Q L K Q Sbjct: 170 NKVLHDNPQARIKYITAENFINEFVLHIRLDKMDELKLKYRHLDVLLIDDIQSLAKKSTQ 229 Query: 278 ---HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF + N L D+ KQ+V +DR P +L ++ R+ +R + G++V + D+E R + Sbjct: 230 ATQEEFFNTFNVLHDNNKQIVLTSDRNPDQLNEMEERLVTRFKWGLTVNITPPDFETRVA 289 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAEI 392 IL N + D + E + ++A ++ R+L+GA LV +T E+ Sbjct: 290 ILTN-----KIMDYDYHFPPETIEYLAGQFDSNVRDLEGALKDISLVANVRQLDTITVEV 344 Query: 393 ADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E + ++ + + IEDIQ V K YN++ ++ + +R + +V RQVAMYL++ Sbjct: 345 AAEAIRARKIDGPKLTLIPIEDIQSEVGKFYNVTVKEIKATKRTQNIVLARQVAMYLARE 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E++ +K I Sbjct: 405 MTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIDTIKNKIK 454 >gi|167916970|ref|ZP_02504061.1| chromosomal replication initiation protein [Burkholderia pseudomallei BCC215] gi|238561943|ref|ZP_00441124.2| chromosomal replication initiator protein DnaA [Burkholderia mallei GB8 horse 4] gi|238523506|gb|EEP86944.1| chromosomal replication initiator protein DnaA [Burkholderia mallei GB8 horse 4] Length = 406 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 36 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 95 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 96 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 150 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 151 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 210 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 211 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 265 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 266 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 324 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 325 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 384 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 385 DERGKDAQLNHELHVLEQTLK 405 >gi|167892200|ref|ZP_02479602.1| chromosomal replication initiation protein [Burkholderia pseudomallei 7894] Length = 397 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 27 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 86 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 87 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 141 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 142 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 201 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 202 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 256 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 257 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 315 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 316 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 375 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 376 DERGKDAQLNHELHVLEQTLK 396 >gi|167843721|ref|ZP_02469229.1| chromosomal replication initiation protein [Burkholderia pseudomallei B7210] gi|167908929|ref|ZP_02496020.1| chromosomal replication initiation protein [Burkholderia pseudomallei 112] Length = 389 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 19 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 78 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 79 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 133 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 134 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 193 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 194 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 248 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 249 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 307 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 308 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 367 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 368 DERGKDAQLNHELHVLEQTLK 388 >gi|167822116|ref|ZP_02453587.1| chromosomal replication initiation protein [Burkholderia pseudomallei 9] Length = 386 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 16 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 75 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 76 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 130 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 131 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 190 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 191 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 245 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 246 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 304 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 305 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 364 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 365 DERGKDAQLNHELHVLEQTLK 385 >gi|167813575|ref|ZP_02445255.1| chromosomal replication initiation protein [Burkholderia pseudomallei 91] Length = 391 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 21 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 80 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 81 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 135 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 136 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 195 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 196 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 250 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 251 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 309 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 310 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 369 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 370 DERGKDAQLNHELHVLEQTLK 390 >gi|167736497|ref|ZP_02409271.1| chromosomal replication initiation protein [Burkholderia pseudomallei 14] Length = 385 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 15 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 74 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 75 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 129 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 130 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 189 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 190 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 244 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 245 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 303 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 304 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 363 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 364 DERGKDAQLNHELHVLEQTLK 384 >gi|312864110|ref|ZP_07724345.1| chromosomal replication initiator protein DnaA [Streptococcus vestibularis F0396] gi|322515792|ref|ZP_08068737.1| DNA-directed DNA replication initiator protein [Streptococcus vestibularis ATCC 49124] gi|311100342|gb|EFQ58550.1| chromosomal replication initiator protein DnaA [Streptococcus vestibularis F0396] gi|322125754|gb|EFX97072.1| DNA-directed DNA replication initiator protein [Streptococcus vestibularis ATCC 49124] Length = 454 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 141/470 (30%), Positives = 231/470 (49%), Gaps = 29/470 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + K ++ + + K + N+ + + K + + I Sbjct: 8 FWNKLLELAKEELTQATFDYYVLDTKLIKIQDNVATILLE-EVKKLFWEKNMQSFILMTG 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 E ++ VE + + ++ T SS + T P S Sbjct: 67 FEVYNSEIKVEYVFDEALVSEIKPTLSSNDFSNKREQQTPA------------LPTLNSD 114 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F FI+G NR ++ A+ ++A+ Y NPLFI+ GLGKTHLL AI Sbjct: 115 LNSKYTFDNFIQGDENRWSVAASLAVADSPGATY-----NPLFIYGGPGLGKTHLLNAIG 169 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 N + P R+ Y+TAE F+ F IR + LK R++D+LLIDD+Q L K Q Sbjct: 170 NKVLHDNPQARIKYITAENFINEFVLHIRLDKMDELKLKYRHLDVLLIDDIQSLAKKSTQ 229 Query: 278 ---HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF + N L D+ KQ+V +DR P +L ++ R+ +R + G++V + D+E R + Sbjct: 230 ATQEEFFNTFNVLHDNNKQIVLTSDRNPDQLNEMEERLVTRFKWGLTVNITPPDFETRVA 289 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAEI 392 IL N + D + E + ++A ++ R+L+GA LV +T E+ Sbjct: 290 ILTN-----KIMDYDYHFPPETIEYLAGQFDSNVRDLEGALKDISLVANVRQLDTITVEV 344 Query: 393 ADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E + ++ + + IEDIQ V K YN++ ++ + +R + +V RQVAMYL++ Sbjct: 345 AAEAIRARKIDGPKLTLIPIEDIQSEVGKFYNVTVKEIKATKRTQNIVLARQVAMYLARE 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ FG RDH+TVLHA K++ ML D +L+ E++ +K I Sbjct: 405 MTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMLAQDDSLRIEIDTIKNKIK 454 >gi|282877834|ref|ZP_06286646.1| chromosomal replication initiator protein DnaA [Prevotella buccalis ATCC 35310] gi|281300045|gb|EFA92402.1| chromosomal replication initiator protein DnaA [Prevotella buccalis ATCC 35310] Length = 470 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 118/474 (24%), Positives = 228/474 (48%), Gaps = 16/474 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + V+ + + ++ V Y +WFQ + + S L VP+ F+ +++ Sbjct: 1 MNVSPNQAWGQALALIRENVSKQQYDTWFQPITYESFDEATRTLLIQVPSPFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVE--ILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 Y++ ++K+ + ++ I+ + + A +T + P + P Sbjct: 61 YIDLLSKVLRRSFCDNIRLKYRIVTDQEHHLTQDVEAEQTDVTGVKPQKKTRANQPPSAL 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 L+ F+ +IEG SN++ + SIAE + + NP+FI+ G Sbjct: 121 DAAQPQQLDPNLNPHLTFNNYIEGDSNKLPRSVGMSIAEHPNK----TQFNPMFIYGPSG 176 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 GKTHL+ AI S + P RV+Y++A F ++ +A+ N + + + IDLL++D Sbjct: 177 CGKTHLINAIGMLSKQLYPQKRVLYVSARLFQVQYTNAVLQNSVNDFINFYQTIDLLIVD 236 Query: 267 DMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L Sbjct: 237 DIQEWMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNERLLTRFACGLIAELE 296 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 + ++ IL S+ + L I ++V+ ++A+T S R+L G N L+ + Sbjct: 297 KPNLQLCIDILN-----SKIQRDGLQIPDDVVQYIAQTANGSVRDLQGVINSLLAYSVVY 351 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 ++ +A ++ V K + I++I V +H+N++ + + S R + +V RQ+ Sbjct: 352 NSVVDMRLAQRVIQRAVKID-DKPLTIDEILDTVCRHFNVTVSAVNSKSRKQELVTARQL 410 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +MYL++ T IG+ G RDH+TV+H+ ++E+ L+ D EV ++ Sbjct: 411 SMYLAQKYTKMPASRIGKLVGGRDHSTVIHSCTRIEQRLKLDSMFSNEVMSIEN 464 >gi|72160407|ref|YP_288064.1| chromosomal replication initiation protein [Thermobifida fusca YX] gi|123774818|sp|Q47U23|DNAA_THEFY RecName: Full=Chromosomal replication initiator protein DnaA gi|71914139|gb|AAZ54041.1| bacterial chromosomal replication initiator protein, DnaA [Thermobifida fusca YX] Length = 615 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 123/390 (31%), Positives = 198/390 (50%), Gaps = 13/390 (3%) Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 P S + P+ + + G + L+ ++ F TF+ GSSNR Sbjct: 228 NRPHDVGGDSGVPSAEQPPVTPPLGVTERGDGSTNPTSGGPDQLNPKYTFDTFVIGSSNR 287 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 A V NPLF++ GLGKTHLL AI + + + RV Y+++ Sbjct: 288 F-----AHAAAVAVAEAPAKAYNPLFVYGGSGLGKTHLLHAIGHYTQRLYEGARVRYVSS 342 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQ 293 E F F ++IRD A + R+ID+LL+DD+QFL+ K Q EF H N+L +S KQ Sbjct: 343 EEFTNEFINSIRDGKADGFRRRYRDIDVLLVDDIQFLENKEQTQEEFFHTFNTLHNSNKQ 402 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + LN Sbjct: 403 IVISSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAAQEGLNAP 457 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIE 412 EVL +A ++T+ REL+GA ++ S + + +L L+ E ++ Sbjct: 458 PEVLEFIASKISTNIRELEGALIRVTAFASLNRQSVDLHLTSIVLRDLIPNDEVPEITAA 517 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 +I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG++FG RDHTTV Sbjct: 518 EIMAQTASYFGLTPEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFG-RDHTTV 576 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLISE 502 +HA RK+ ++ ++ +V L I + Sbjct: 577 MHADRKIRSLMAERRSIYNQVTELTNRIKQ 606 Score = 69.3 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 20/120 (16%), Positives = 44/120 (36%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++N +++ V L N P + +W + + ++ + L+ P F K ++ R Sbjct: 5 QINLAMVWSRVLDNLDNNSLPPQHRAWLPQTRPLGLIEDTALLAAPNEFAKEILETRLRT 64 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I++ E R V + V A+P T + S + + + + Sbjct: 65 VISQALSAELGREIRVAVTVDPSAVPPSAPTEEASSTSSPDSSHPAPDQGSASYSGPRDT 124 >gi|167041954|gb|ABZ06692.1| putative bacterial DnaA protein [uncultured marine microorganism HF4000_137B17] Length = 461 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 120/469 (25%), Positives = 213/469 (45%), Gaps = 19/469 (4%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ++ V L+ V Y +W + + + P F+ ++ R I Sbjct: 7 QPKELWEAVLGDLQMHVTRPNYETWLKNTVGIAFRDGEFVVGTPNAFVAEMLEQRMYSLI 66 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + + V V +L+ P K + Sbjct: 67 SLTAERVVKGPVEVRFQVLLSEEVDATDEPEDADDQRLTEAEPTGVLHPTFSPKARL--- 123 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L++++ F F+ G SN +A AA++++ Y+ PL ++ +VGLGKTHL+ Sbjct: 124 --TTLNTKYTFGRFVVGKSNELAHAAAEAVSNRPGEVYS-----PLVLYGAVGLGKTHLM 176 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI + ++ L ++Y T E F + AI + +D R+ D+LL+DD+QFL G Sbjct: 177 HAIGHRAVAN--GLSLIYATTEEFTNEYIKAIGEGRTEEFRDRYRSTDVLLLDDIQFLIG 234 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q F H N+L + +Q+V +DRP S L L+ RI+SRL GG+ V + D E R Sbjct: 235 KEQTQEGFFHTFNALHMTNRQIVITSDRPVSALTLLEDRIQSRLAGGLVVDIQAPDIETR 294 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ ++ E ++++ VL +A + + REL+G+ N++V +L E Sbjct: 295 LAILR-----AKAETINQDVSQTVLDFLAERIHKNIRELEGSLNRVVAYADLTGSLLDVE 349 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + + L + E + + + VA HY + + L +R + + RQ+AMYL + Sbjct: 350 LVKRAIDGLADPDEHRAIPDYVVVDAVATHYGVDQQVLKGRKRDKKTAQARQMAMYLMRE 409 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 IGR G +DHTTV H +++ L D L++++ ++ + Sbjct: 410 DGNMGLTAIGRVLGGKDHTTVAHGCDRIKTQLPVDAQLRRDLLKIREAL 458 >gi|93004834|ref|YP_579271.1| chromosomal replication initiator protein DnaA [Psychrobacter cryohalolentis K5] gi|92392512|gb|ABE73787.1| chromosomal replication initiator protein DnaA [Psychrobacter cryohalolentis K5] Length = 481 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 138/491 (28%), Positives = 248/491 (50%), Gaps = 35/491 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ +I+ + L+ V +V+ W + L H +N + + P ++ +IK +LE Sbjct: 2 IDTANIWDKCLNDLRYHVKDNVFTMWLRPLSAHQ-ENNTLIILAPNDYFVTYIKKNHLED 60 Query: 93 ITKL-FQEEHSRIQGVEILVRSVALP-------------SVEKTASSPSITKLSPINTNI 138 I +L + I+ V + V + S + + +PS I+ N Sbjct: 61 IQQLVAKHSQGSIEEVIVRVDNAGRDIDDSSSLQSGSLFSEDNLSPTPSNHDFETIHHNN 120 Query: 139 SKSPIILGKQTISPVFGSP------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 +K+ I + + + L+ F F TF+ G SN +A A + + Sbjct: 121 AKADIDANMRHAEAIDSADAKSLNYLNPDFTFETFVTGKSNNLAYKACYEL----GKRQS 176 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 R NPLFI+ GLGKTHL+ ++A+ +K N Y T+E F+ + ++R+N + Sbjct: 177 KNRHNPLFIYGPSGLGKTHLMHSVAHRYLKNNQN--FYYFTSEKFINQLVYSLRNNKIED 234 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K ++ +DLL++DD+ L GK +EF L KQ++ A+DR PS++ D R Sbjct: 235 FKKKIKKVDLLIVDDIHVLAGKTKSSNEFLTLFADFTSGDKQLILASDRHPSQMTEFDER 294 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 RSR G++V + + + R IL+ + A +++ +E + +A+ V ++ R L Sbjct: 295 FRSRFSWGLTVAVDPPEIDTRVQILQRKAASY-----GMSLPKECALFIAQNVVSNVRRL 349 Query: 372 DGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +GA NQ+ + +T E+ L +V + + +++I+++VA++Y+++ D+L Sbjct: 350 EGALNQVFANANLTGAPITLEMVQYALKDIV-AMRVQAVNMDNIRKVVAEYYDVTIKDML 408 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 +R R++ RPRQ+AM LS+ +T SFPEIG+ FG RDHTTV+HA KV ++ D Sbjct: 409 GRKRTRSIARPRQIAMALSRELTSESFPEIGQSFGGRDHTTVMHACDKVNELRAADPAFD 468 Query: 491 KEVELLKRLIS 501 K+ + L ++ Sbjct: 469 KDYKTLALMLQ 479 >gi|289450862|ref|YP_003474445.1| chromosomal replication initiator protein DnaA [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185409|gb|ADC91834.1| chromosomal replication initiator protein DnaA [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 438 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 121/472 (25%), Positives = 224/472 (47%), Gaps = 39/472 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + ++ ++ ++ + +W LK S + L P F + +K Sbjct: 1 MPIIAKDLWNQALIKIAKEIPEITFKTWIAPLKAVSCEGDTFVLEAPNEFNRDQVKQY-- 58 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 F+ I V+ ++ + T ++ S+ + S Sbjct: 59 ---EAFFRNALMSIVPVQFHIKLTYEGAETPTKNTFSLPQTS------------------ 97 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 ++ F F FI GSSN A A S+A+ + NPLF++ GLGKT Sbjct: 98 ---IEGNINPAFTFDNFIVGSSNAHAHAACVSVAQN------SRVFNPLFLYGGSGLGKT 148 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N + QP ++Y+ E F+ F IR+N + + RN D+LLIDD+QF Sbjct: 149 HLLHAIGNYVKQHQPEKHIIYVPCEQFVNEFIRTIRENSYDSFRQKYRNCDMLLIDDIQF 208 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 ++ K +Q EF N+L ++ ++ D+PP L SL+ R+R+R GV V + + ++ Sbjct: 209 IESKEQMQIEFFSTFNALTENGSNIIMTCDKPPHSLSSLEERLRTRFASGVIVDINIPNF 268 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 E R +IL+ + E + ++ ++L ++A +S REL+GAF ++ + L Sbjct: 269 ETRVAILQK-----RAEFLNIQVSYDILEYIAHNFVSSIRELEGAFTTVISYSYISGKLD 323 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A L++L++ + K M E I +VA+++N + +++ S + + + RQV MYL Sbjct: 324 LSVAKAALNNLISPSKRKSMTPETIIPIVARYFNFTEDEIKSKNKNKDLAIARQVTMYLL 383 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE-TDITLKKEVELLKRLI 500 + ++ +IG+ G + H+TV++ K+ ++ + T+ V L + I Sbjct: 384 TKHSDLTYEQIGKIIGGKHHSTVMYGFNKINDEIKGGNQTIISAVNDLNQRI 435 >gi|330444376|ref|YP_004377362.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] gi|328807486|gb|AEB41659.1| chromosomal replication initiator protein DnaA [Chlamydophila pecorum E58] Length = 450 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 139/466 (29%), Positives = 232/466 (49%), Gaps = 27/466 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + + +K + + +W ++ + L VP F++ ++ + Y + + Sbjct: 8 NTWEQFVNYVKTRCSKTAFENWISPIQVVEETQEKIRLEVPNIFVQNYLLDNYKKDLCSF 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +E +V + T + P ++SP K+ F Sbjct: 68 VPLDIHGEPALEFVVSEIKKLPPSSTVNEPREV--------FAESPAEETKE-----FQL 114 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+S + F FIEGSSN+ +AA IA Y NPLFIH VGLGKTHLL AI Sbjct: 115 KLNSSYRFDNFIEGSSNQFVKSAAVGIAGKPGRSY-----NPLFIHGGVGLGKTHLLHAI 169 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + NL++ +T E F+ ++ +K+ R++DLLL+DD+QFLQ + Sbjct: 170 GHYVREHHKNLKIHCITTEAFINDLVYHLKSKSIDKMKNFYRSLDLLLVDDIQFLQNRQN 229 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + EFC+ +L++ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +I Sbjct: 230 FEEEFCNTFETLINFSKQIVITSDKPPGQLK-LSERIIARMEWGLVAHVGIPDLETRVAI 288 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 L++ + E L I EV ++A + + R+L+GA N+L F +T Sbjct: 289 LQH-----KAEQKGLVIPNEVAFYIADHIYGNVRQLEGAINKLTAYCRLFGKGITENTVH 343 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L + +K+ +E I + VA + + DL N R + +V RQVAMYL+K + Sbjct: 344 DTLKELFRSPTKQKVSVESILKSVATVFQVKIQDLKENSRAKELVLARQVAMYLAKTLIT 403 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG + H+T+L+A + +E L+ D TLK +V L K I Sbjct: 404 DSLVAIGAAFG-KTHSTILYACKTIEHKLQEDDTLKHQVNLCKNHI 448 >gi|296167143|ref|ZP_06849550.1| DNA-directed DNA replication initiator protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897465|gb|EFG77064.1| DNA-directed DNA replication initiator protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 518 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 133/507 (26%), Positives = 235/507 (46%), Gaps = 53/507 (10%) Query: 37 SIFTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 +++ V S L + + P +W ++ +++ LSVP++F Sbjct: 20 TVWNAVVSELNGEPTPDGAPANRTTLVAPLTPQQ-RAWLNLVQPLTIVEGFALLSVPSSF 78 Query: 81 LKAWIKNRYLETITKLFQEEHSRI--QGVEILVRSVALPSVEKTASSPSITKLSPINTNI 138 ++ I+ IT + GV I V + P S + Sbjct: 79 VQNEIERHLRAPITDALSRRLGQQIQLGVRIAPPDDDADDVVLGQAEPFAQGDSAFPDDA 138 Query: 139 SKS---------------------PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 + + G+ L+ R+ F TF+ G+SNR Sbjct: 139 GDADETDENGEAADSAQQGWTNYFAERPHPADPAVAGGTSLNRRYTFDTFVIGASNRF-- 196 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 A + NPLFI GLGKTHLL A N + + P +RV Y++ E F Sbjct: 197 ---AHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEF 253 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVA 296 F +++RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V Sbjct: 254 TNDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVI 313 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L + ++V Sbjct: 314 SSDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPDDV 368 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQ 415 L +A ++ + REL+GA ++ S + +A+ +L L+ T ++ I Sbjct: 369 LELIASSIERNIRELEGALIRVTAFASLNKTPIDKALAEIVLRDLIADASTMQISAATIM 428 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 A++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A Sbjct: 429 AATAEYFDTTVEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYA 487 Query: 476 VRKVEKMLETDITLKKEVELLKRLISE 502 RK+ + + V+ L I + Sbjct: 488 QRKILSEMAERREVFDHVKELTTRIRQ 514 >gi|308232614|ref|ZP_07416626.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu001] gi|308369280|ref|ZP_07417156.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu002] gi|308371505|ref|ZP_07425168.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu003] gi|308371555|ref|ZP_07425297.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu004] gi|308372785|ref|ZP_07429832.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu005] gi|308378519|ref|ZP_07482837.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu009] gi|308379669|ref|ZP_07487069.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu010] gi|308380868|ref|ZP_07491286.2| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu011] gi|308213439|gb|EFO72838.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu001] gi|308328156|gb|EFP17007.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu002] gi|308328618|gb|EFP17469.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu003] gi|308336273|gb|EFP25124.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu004] gi|308339879|gb|EFP28730.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu005] gi|308352300|gb|EFP41151.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu009] gi|308356303|gb|EFP45154.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu010] gi|308360190|gb|EFP49041.1| chromosomal replication initiator protein dnaA [Mycobacterium tuberculosis SUMu011] Length = 496 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 131/482 (27%), Positives = 235/482 (48%), Gaps = 35/482 (7%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 + L + P +W ++ +++ LSVP++F++ I+ IT Sbjct: 23 ANLSAPLTPQQ-RAWLNLVQPLTIVEGFALLSVPSSFVQNEIERHLRAPITDALSRRLGH 81 Query: 104 IQGVEILVRSVA--------LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + A +P E A++ T + S + + + F Sbjct: 82 QIQLGVRIAPPATDEADDTTVPPSENPATTSPDTTTDNDEIDDSAAARGDNQHSWPSYFT 141 Query: 156 -------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ R+ F TF+ G+SNR A + NPLFI Sbjct: 142 ERPHNTDSATAGVTSLNRRYTFDTFVIGASNRF-----AHAAALAIAEAPARAYNPLFIW 196 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A N + + P +RV Y++ E F F +++RD+ + K S R++D+ Sbjct: 197 GESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRSYRDVDV 256 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ Sbjct: 257 LLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPKQLATLEDRLRTRFEWGLI 316 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + E R +IL+ + + +L + ++VL +A ++ + REL+GA ++ Sbjct: 317 TDVQPPELETRIAILRK-----KAQMERLAVPDDVLELIASSIERNIRELEGALIRVTAF 371 Query: 382 HSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + +A+ +L L+ T ++ I A++++ + +L + R + + Sbjct: 372 ASLNKTPIDKALAEIVLRDLIADANTMQISAATIMAATAEYFDTTVEELRGPGKTRALAQ 431 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL + +T S P+IG+ FG RDHTTV++A RK+ + + V+ L I Sbjct: 432 SRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRI 490 Query: 501 SE 502 + Sbjct: 491 RQ 492 >gi|313681131|ref|YP_004058869.1| chromosomal replication initiator protein dnaa [Sulfuricurvum kujiense DSM 16994] gi|313153991|gb|ADR32669.1| chromosomal replication initiator protein DnaA [Sulfuricurvum kujiense DSM 16994] Length = 442 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 133/471 (28%), Positives = 239/471 (50%), Gaps = 40/471 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETI 93 SI V + LK ++ Y + ++L + NI P + W++ ++ + I Sbjct: 2 NSIGKQVLNALKGEINEIDYQRYIKQLTYDEAESKSNIAVFRAPNTLIANWVRTKFADKI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPS-VEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 LF+ + + V IL++S ++ S V+ T + P+I + Sbjct: 62 AHLFEIKTNVKPTVSILIQSTSVQSSVQNTVAVPNIERPG-------------------- 101 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 GS L+ F F F+ G SN A AA++++E Y NPLFI+ VGLGKTHL Sbjct: 102 --GSLLNPSFTFQNFVVGDSNNFAFIAAKNVSEKPGVVY-----NPLFIYGGVGLGKTHL 154 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +Q++ N + + V+Y + E F+ F + + KD R DLLLIDD+QFL Sbjct: 155 MQSVGNVMLSQ--GKTVIYTSVEQFLNDFTRHLSNRTMDRFKDKYRKCDLLLIDDIQFLS 212 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K IQ EF H ++L + KQ++ +D+PP ++ L+ R++SR + G+ + + E Sbjct: 213 NKNQIQEEFFHTFDALRNENKQIIITSDKPPKKIGGLEERLKSRFESGLVADIQPPELET 272 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 + I+K + I++ + ++ EV+ +VA + + RE++G ++L + +T Sbjct: 273 KIEIIKKKCEINR-----VKLDREVINYVATIIENNTREIEGILSKLNAYSQLMGVDITI 327 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A +L + + + + I VAK NI +++ S R +V R++A+YLS+ Sbjct: 328 EFARNVLKEQMAEKRS-NITTDLIMDTVAKELNIKPSEIRSKSRNSNIVYARRIAIYLSR 386 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP S P++ + FG +DHT V H ++K++++++ D + ++E L +S Sbjct: 387 TLTPNSMPQLAQYFGMKDHTAVSHTMKKIQELMKNDEDFRVKIEELSNKVS 437 >gi|19551251|ref|NP_599253.1| chromosomal replication initiation protein [Corynebacterium glutamicum ATCC 13032] gi|62388893|ref|YP_224295.1| chromosomal replication initiation protein [Corynebacterium glutamicum ATCC 13032] gi|38257663|sp|Q8NUD8|DNAA_CORGL RecName: Full=Chromosomal replication initiator protein DnaA gi|21322765|dbj|BAB97394.1| ATPase involved in DNA replication initiation [Corynebacterium glutamicum ATCC 13032] gi|41324226|emb|CAF18566.1| CHROMOSOMAL REPLICATION INITIATOR PROTEIN [Corynebacterium glutamicum ATCC 13032] Length = 524 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 141/531 (26%), Positives = 238/531 (44%), Gaps = 72/531 (13%) Query: 31 LEVNCESI---FTIVSSRLKNQVGPDVYASWFQRL-----------KFHSVLHNIVHLSV 76 + N S+ + V + L + S F L K +++ LS Sbjct: 1 MSQNSSSLLETWRQVVADL-TTLSQQA-DSGFDPLTPTQRAYLNLTKPIAIVDGYAVLST 58 Query: 77 PTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLS 132 P K I+N + +T++ R + + V P+ ++ P +S Sbjct: 59 PNAMAKNVIENDLGDALTRVLSLRMGRSFSLAVSVEPEQEIPETPAQQEFKYQPDAPVIS 118 Query: 133 ----------------------------------------PINTNISKSPIILGKQTISP 152 P + I +P Sbjct: 119 SNKAPKQYEVGGRGEASTSDGWERTHSAPAPEPHPAPIADPEPELATPQRIPRETPAHNP 178 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ ++ F +F+ G NR A AA ++AE + NPLFI GLGKTHL Sbjct: 179 NREVSLNPKYTFESFVIGPFNRFANAAAVAVAESPAKA-----FNPLFISGGSGLGKTHL 233 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+ N + + QP LR+ Y+++E F + +++RD+ K RN+D+L++DD+QFL Sbjct: 234 LHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQETFKRRYRNLDILMVDDIQFLA 293 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ + D E Sbjct: 294 GKEGTQEEFFHTFNALHQADKQIILSSDRPPKQLTTLEDRLRTRFEGGLITDIQPPDLET 353 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + + + +++ EVL +A +S REL+GA ++ S + Sbjct: 354 RIAIL-----MKKAQTDGTHVDREVLELIASRFESSIRELEGALIRVSAYSSLINQPIDK 408 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A L ++ E ++ I + A+++ IS + L + R V RQ+AMYL + Sbjct: 409 EMAIVALRDILPEPEDMEITAPVIMEVTAEYFEISVDTLRGAGKTRAVAHARQLAMYLCR 468 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG FG +DHTTV++A RK+ + + E++ L +LI Sbjct: 469 ELTDMSLPKIGDVFGGKDHTTVMYADRKIRQEMTEKRDTYDEIQQLTQLIK 519 >gi|154483923|ref|ZP_02026371.1| hypothetical protein EUBVEN_01629 [Eubacterium ventriosum ATCC 27560] gi|149735414|gb|EDM51300.1| hypothetical protein EUBVEN_01629 [Eubacterium ventriosum ATCC 27560] Length = 462 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 128/483 (26%), Positives = 235/483 (48%), Gaps = 35/483 (7%) Query: 31 LEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK---AWI 85 + + + + + K + + + +W L+ S +N++ L P K +I Sbjct: 1 MLDDLKEKWPEILDFFKQEYDIADVSFKTWILPLEVESFENNMITLVFPGESGKTGLQYI 60 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 +YL + +E ++ ++I++ + + +E +S S I+ Sbjct: 61 NKKYLALLKISIEETLNQELELQIILPNETVSKIEDESSKISSVSQEDISLE-------- 112 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + + + L+ ++ F +F+ GS+N +A + ++AE Y NPLFI+ V Sbjct: 113 -----NRILDANLNKKYTFDSFVVGSNNNIAQVTSLAVAESPGDVY-----NPLFIYGGV 162 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL-----NLKDSLRNI 260 GLGKTHL+Q+I N +K P+ +V+Y T+E F +R + R++ Sbjct: 163 GLGKTHLIQSIGNFVLKNNPSAKVLYTTSESFTNEVIDLLRKKKTNQEEIIEFRKKYRSV 222 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LLIDD+QF+ G+ Q E ++ N L KQ+V +D+ P ++E + R+ SR + G Sbjct: 223 DVLLIDDIQFISGRDRTQEEIFNIFNDLFMKHKQIVLTSDKKPKDMEGIAERLISRFEQG 282 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + DYE R +ILK + E NI+E VL ++A ++ REL+G+ +++ Sbjct: 283 LTVDIQNPDYETRMAILKK-----KAETSGYNIDEGVLQYIANHFVSNVRELEGSLTRVI 337 Query: 380 FRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 + +T + A +L LV + + E I +VA H+ IS D+ S ++ R Sbjct: 338 TFSKISHSPITVDFASGVLQELVAPNQENAITCEYIINIVADHFQISPTDICSKKKSREF 397 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 PRQ+ MYL ++ T IG +H TV + K++ +ETD + +++LK+ Sbjct: 398 AYPRQICMYLCRVFTDEKLETIGAALKKTNHATVSYGYDKIKSEIETDSKTRDLIDVLKK 457 Query: 499 LIS 501 I+ Sbjct: 458 KIN 460 >gi|23335939|ref|ZP_00121170.1| COG0593: ATPase involved in DNA replication initiation [Bifidobacterium longum DJO10A] Length = 506 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 130/504 (25%), Positives = 228/504 (45%), Gaps = 45/504 (8%) Query: 33 VNCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + I++ + LK + P W + + V + + L V N I+ Sbjct: 10 IEAAHIWSDTLTVLKHSASLSPRE-KGWLEGVVPEGVFGSTIVLCVDNNDTLQAIQGDLN 68 Query: 91 ETITKLFQEEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPI-------------- 134 +++ + + +++ ++ P E + P +++SP Sbjct: 69 DSLLQALRTVTGENMFPAFKVVPKTEPEPLSEAKPAQPYPSEISPTVAEFGKESYGAKPA 128 Query: 135 -----NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 ++ +G+Q ++ + L+ F F +F+ G SNR A T A ++AE Sbjct: 129 AAPREPMPATEPQFPVGQQKMNRDPETHLNKNFTFDSFVPGDSNRFARTVALAVAEGSGQ 188 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-- 247 NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E F F A+++ Sbjct: 189 D-----FNPLCIYGGSGLGKTHLLNAIGNYALVKDPGLKVRYVTSEEFTNEFIDALQNPN 243 Query: 248 ---NCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 R +D+LLIDD+QFL GK +F H N+L + K++V A+D P Sbjct: 244 QSQGQIAEFNRRYRQVDVLLIDDIQFLGGKEATLDQFFHTFNALHQANKRIVIASDVAPK 303 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L+ + R+ SR + G++V + D E R +IL+ +++ + I +VL +A Sbjct: 304 NLKGFEARLISRFESGLTVDVKPPDLETRIAILRMIASMNGSK-----IPSDVLDLIAER 358 Query: 364 VTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGE-----TKKMRIEDIQRMV 418 T + REL+GA ++ S + +++ DI V Sbjct: 359 FTENIRELEGALTRVTAVASLSNQPVXXXXXXXXXXXXXXXXXFFTTDVEIKPTDIISQV 418 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 AK+++++ DL+ R + V PRQ+AMYL++ MT S +IG+ FG RDHTTV+HA + Sbjct: 419 AKYFHLTFEDLVGKSRTKNVAVPRQIAMYLAREMTSMSLMDIGQVFGGRDHTTVMHACTR 478 Query: 479 VEKMLETDITLKKEVELLKRLISE 502 + ++ + V L + + Sbjct: 479 ISDRMQQKQEIYNYVMELTVRLKQ 502 >gi|167717462|ref|ZP_02400698.1| chromosomal replication initiation protein [Burkholderia pseudomallei DM98] Length = 381 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 206/381 (54%), Gaps = 16/381 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVF---GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 PS+T + P + + S L+ F F+ G +N++A AA Sbjct: 11 PSLTAHEAAAGRRTWRPGAANANSEAADSMYERSKLNPVLTFDNFVTGKANQLARAAAIQ 70 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ VGLGKTHL+ AI N + +P R+ Y+ AE ++ Sbjct: 71 VADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVV 125 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D Sbjct: 126 KAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTY 185 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ +D R+ SR G++V + + EMR +IL + + + ++++E+V VA Sbjct: 186 PKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVA 240 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA Sbjct: 241 KHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVAD 299 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 YNI D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 300 FYNIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIA 359 Query: 481 KMLETDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 360 DERGKDAQLNHELHVLEQTLK 380 >gi|153002880|ref|YP_001377205.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. Fw109-5] gi|152026453|gb|ABS24221.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. Fw109-5] Length = 460 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 135/466 (28%), Positives = 230/466 (49%), Gaps = 26/466 (5%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +++ + + L++++ PD+Y WF L+ S+ + ++ P F + ++++ Y + Sbjct: 17 ALWARIDTYLRSRLRPDLYDRWFAPLRLVSLEGGRLQIAAPDPFHRDFVEDNYRAFFEEF 76 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 R + +V S + ++ P + P Sbjct: 77 APGILGRQLPIAFVVDSAPRVASPPAPAAGPALSPVP-----------RAAEPADPRESR 125 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P + R+ F TF+ G SNR A AAQ++A H NPLF+H GLGKTHLL A+ Sbjct: 126 P-NPRYTFDTFVVGESNRFAFAAAQAVAANPGH-----TWNPLFLHGDSGLGKTHLLHAL 179 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 A+A + +Q RV +++E + F +A+ + + R LL+DD+QFL GK Sbjct: 180 AHAILDKQGG-RVAIVSSERYTNDFVAALSKGTMDDFRRKYRECTALLVDDVQFLAGKDK 238 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 EF H N L D Q+V ++DR P EL+ LD R+ SR + G+ V + ++E R +I Sbjct: 239 TAEEFFHTFNELHDHHVQIVLSSDRSPKELKGLDARLCSRFEWGMRVQVEAPEFETRAAI 298 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIAD 394 L+ + E +++ +V +A + ++ REL+GA +L S +T +A Sbjct: 299 LQK-----KAEVESIDLPGDVTQLLAAHIRSNVRELEGALMRLAAFASLKSEPITVALAR 353 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 ++LS ++ K IE IQ VA HY ++ L S+ R + + PRQ AMYL + + Sbjct: 354 DVLSDVIPPEGYKP-TIERIQEAVAAHYGLTVAKLTSSSREQKIALPRQAAMYLCRELGK 412 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 F I RF +DHTTV+ AV ++ ++ET+ ++ V++L + Sbjct: 413 EKFQAIAERFNKKDHTTVIAAVERIRTLMETEEPVRSAVQVLTSKL 458 >gi|307728077|ref|YP_003905301.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1003] gi|307582612|gb|ADN56010.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1003] Length = 537 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 128/387 (33%), Positives = 208/387 (53%), Gaps = 17/387 (4%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 PS++ ++ + P + S S S L+ F F+ G +N++A Sbjct: 165 PSLDANEAAAARRTWRPGQSASSNG----SGDNDSMYERSKLNPVLTFDNFVTGKANQLA 220 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ AE Sbjct: 221 RAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLMDKAGARIRYIHAEQ 275 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ Sbjct: 276 YVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVI 335 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +D P E+ +D R+ SR G++V + + EMR +IL + + + +++NE+ Sbjct: 336 ITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEFVSLNED 390 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDI 414 V VA+ + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+I Sbjct: 391 VAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENI 449 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 Q+ VA Y+I D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLH Sbjct: 450 QKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLH 509 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 AVRK+ D L E+ +L++ + Sbjct: 510 AVRKIADERSKDAQLNHELHVLEQTLK 536 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NEFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 + ++ V+ ++ A Sbjct: 62 ADMARDFWHAPIDVQFVLDPKA 83 >gi|170016359|ref|YP_001727278.1| chromosomal replication initiator protein DnaA [Leuconostoc citreum KM20] gi|169803216|gb|ACA81834.1| Chromosomal replication initiator protein DnaA [Leuconostoc citreum KM20] Length = 448 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 144/477 (30%), Positives = 233/477 (48%), Gaps = 44/477 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP----TNFLKAWIKNR 88 + E ++ + ++ ++GP + ++ + L ++ + + L VP T+ + W Sbjct: 5 ITKEELWNQIKAKFYQEIGPVSFDTYIEPLIPITLTESSIILEVPADESTDIIDNW-NKS 63 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y + + E E+ V +I + L + Sbjct: 64 YAMSFVQYAMEIAEGFIKPELRV------------------------ADILPKTMPLTSE 99 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 ++ S L+ F F F+ G+ N A A+++AE Y NP I+ VGLG Sbjct: 100 NLTFTRESDLNENFTFDKFVVGTGNENAYAIARAVAEDPGRVY-----NPYLIYGGVGLG 154 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLID 266 KTHL+QAI NA K P+ R+ Y TAE F+ F ++R + K R +DLLLID Sbjct: 155 KTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRTVDLLLID 214 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK +Q EF + N L + KQ++ +D+ P+E+ L R+ SR + G+S+ + Sbjct: 215 DIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQ 274 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 D R +ILKN E L I +VL +A + ++ R L+G F++ F Sbjct: 275 KPDLPTRVAILKNL-----AETDGLTIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRFR 329 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 T E A ++L L N + K+ +E IQ++VA +Y + +DL S R + +V R V Sbjct: 330 NKPATKETAQQILGDL-NINQGFKITVERIQQVVADYYMQTIDDLKSTSRKKDLVTARHV 388 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYL++ +T S P+IGR FG RDH++VLHA K+ + E+D K+ ++ L I Sbjct: 389 AMYLTRTLTNESLPDIGRSFGGRDHSSVLHATNKITEKAESDARTKEMLDALTDEIK 445 >gi|319945018|ref|ZP_08019280.1| DNA-directed DNA replication initiator protein [Lautropia mirabilis ATCC 51599] gi|319741588|gb|EFV94013.1| DNA-directed DNA replication initiator protein [Lautropia mirabilis ATCC 51599] Length = 592 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 127/353 (35%), Positives = 203/353 (57%), Gaps = 13/353 (3%) Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P S L+ F+ F+ G +N +A AA +A+ Y NPLFIH VGLGKTH Sbjct: 249 PNERSRLNPGLTFAAFVNGKANDLARAAALQVADRPGSAY-----NPLFIHGGVGLGKTH 303 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QA+ NA +R+ + Y+++ F+ AIR N K +++D+LLIDD+QFL Sbjct: 304 LMQAVGNAIQQRESRAIIRYISSNQFVQDLIQAIRRNAIDRFKHYYQSLDVLLIDDIQFL 363 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 K Q EF H+ ++ + +Q+V D P EL+ +D R+ SRL G+ V + + E Sbjct: 364 SDKQRSQEEFFHVFETMTINQRQIVITCDTYPKELKGIDDRLISRLNSGLIVAIEPPELE 423 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 MR +IL+ + E ++ + ++V +A+ + + REL+GA + + SF + LT Sbjct: 424 MRVAILQR-----KAEQARIRLPDDVAYFIAKNIRRNVRELEGALQRAIHYASFRSSPLT 478 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ E L L++ ++ I+ IQ+ VA++Y I + D+ S R+ + PRQ+AMYL+ Sbjct: 479 LELVKEALKDLISFNRG-QISIDFIQKTVAEYYKIKQADMYSKRKPAKIALPRQIAMYLA 537 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K +T +S PEIG FG +DHTTVL+AVRK+ ++ D L K++ +L + + E Sbjct: 538 KELTQKSLPEIGDAFGGKDHTTVLYAVRKITELRAHDEDLNKQIHVLDQTLRE 590 Score = 65.1 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 19/124 (15%), Positives = 43/124 (34%), Gaps = 2/124 (1%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLETI 93 + + S+ + ++ Y +W + L F ++ L T ++N+Y I Sbjct: 2 QEQWDACSAAIAARMPEQAYKTWIKPLAFLEFSADDCLIRLGAATQIKADIVRNQYQNLI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 ++ ++ VEI V A + + + ++ S P G + Sbjct: 62 QEVLRDVIDPAMRVEIGVAPRAASAAPVAGAGAGAATHAGPSSFASAGPTHPGSMSHGVQ 121 Query: 154 FGSP 157 +P Sbjct: 122 PPAP 125 >gi|189463957|ref|ZP_03012742.1| hypothetical protein BACINT_00292 [Bacteroides intestinalis DSM 17393] gi|189438530|gb|EDV07515.1| hypothetical protein BACINT_00292 [Bacteroides intestinalis DSM 17393] Length = 462 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 121/473 (25%), Positives = 239/473 (50%), Gaps = 17/473 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+N ++ +++ V Y +WF + + + VP+ F ++++++++ Sbjct: 3 ELNHVGLWNRCLEIIRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDKFVD 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + K + G ++L + S T + S + I I Q Sbjct: 63 LLRKTLYKVIGD--GTKLLYNVMVDKSSRTTVNLESTPRTIIPQKKIIGKEI---PQAPI 117 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ + F TFIEG SN+++ + A+++A+ + NPLF + + G+GKTH Sbjct: 118 ADLDPHLNPEYNFETFIEGYSNKLSRSVAEAVAQNPAK----TIFNPLFFYGASGVGKTH 173 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L AI + P+ RV+Y++A F ++ ++R+N + + ++ID+L+IDD+Q Sbjct: 174 LANAIGTKIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQSIDILIIDDIQEF 233 Query: 272 QG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E Sbjct: 234 AGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELERPTVE 293 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 +R +IL+N + L EV+ ++A V S R+L+G ++ + + + Sbjct: 294 LRKNILRN-----KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKEID 348 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A ++ +V + E+K + ++DI +V KH+++ + + R R VV+ RQ+AM+L+ Sbjct: 349 LELAQRIVRKVVKS-ESKAVTVDDIINVVCKHFSLDTATIHTKSRKREVVQARQIAMFLA 407 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K T S +IG G++DH TVLHA + ++++ E D + E++ ++ + + Sbjct: 408 KSYTDFSTAKIGTLIGNKDHATVLHACKTIKELREVDKAFRAEIDDIQASLKK 460 >gi|170694069|ref|ZP_02885225.1| chromosomal replication initiator protein DnaA [Burkholderia graminis C4D1M] gi|170141141|gb|EDT09313.1| chromosomal replication initiator protein DnaA [Burkholderia graminis C4D1M] Length = 542 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 129/388 (33%), Positives = 210/388 (54%), Gaps = 17/388 (4%) Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 LPS++ ++ + P + S + S S L+ F F+ G +N++ Sbjct: 169 LPSLDANEAAAARRTWRPGQSASSNG----NGENDSMYERSKLNPVLTFDNFVTGKANQL 224 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ AE Sbjct: 225 ARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLMDKAGARIRYIHAE 279 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV Sbjct: 280 QYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQV 339 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +D P E+ +D R+ SR G++V + + EMR +IL + + + +++NE Sbjct: 340 IITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEFVSLNE 394 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 +V VA+ + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+ Sbjct: 395 DVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVEN 453 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVL Sbjct: 454 IQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVL 513 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HAVRK+ D L E+ +L++ + Sbjct: 514 HAVRKIADERSKDAQLNHELHVLEQTLK 541 Score = 70.8 bits (172), Expect = 4e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NEFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 + ++ V+ ++ A Sbjct: 62 ADMARDFWQAPVDVQFVLDPKA 83 >gi|289166910|ref|YP_003445177.1| DNA biosynthesis, initiation, binding protein [Streptococcus mitis B6] gi|288906475|emb|CBJ21305.1| DNA biosynthesis, initiation, binding protein [Streptococcus mitis B6] Length = 453 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 141/474 (29%), Positives = 239/474 (50%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWKKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + + + T S + +P +T SP K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFIKPQDTTVSQ---VEDAPNSTLYDYSP----KLASIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMDKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N L ++ KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNVLHNNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E + + L ++A ++ REL+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVNQMLVIPIDKIQNEVGNFYGVSVKEMKGSRRLQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKIK 453 >gi|323524378|ref|YP_004226531.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1001] gi|323381380|gb|ADX53471.1| chromosomal replication initiator protein DnaA [Burkholderia sp. CCGE1001] Length = 538 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 129/388 (33%), Positives = 211/388 (54%), Gaps = 17/388 (4%) Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 LPS++ ++ + P + + +T S S L+ F F+ G +N++ Sbjct: 165 LPSLDANEAAAARRTWRPGQSAGANG----SAETDSMYERSKLNPVLTFDNFVTGKANQL 220 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ AE Sbjct: 221 ARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLMDKAGARIRYIHAE 275 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV Sbjct: 276 QYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQV 335 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +D P E+ +D R+ SR G++V + + EMR +IL + + + +++NE Sbjct: 336 IITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEFVSLNE 390 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 +V VA+ + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+ Sbjct: 391 DVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVEN 449 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVL Sbjct: 450 IQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVL 509 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HAVRK+ D L E+ +L++ + Sbjct: 510 HAVRKIADERGKDAQLNHELHVLEQTLK 537 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NEFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 + ++ V+ ++ A Sbjct: 62 ADMARDFWHAPIDVQFVLDPKA 83 >gi|116490127|ref|YP_809648.1| chromosomal replication initiator protein DnaA [Oenococcus oeni PSU-1] gi|290889521|ref|ZP_06552611.1| hypothetical protein AWRIB429_0001 [Oenococcus oeni AWRIB429] gi|122277682|sp|Q04HR6|DNAA_OENOB RecName: Full=Chromosomal replication initiator protein DnaA gi|116090852|gb|ABJ56006.1| DNA replication ATPase initiation [Oenococcus oeni PSU-1] gi|290480719|gb|EFD89353.1| hypothetical protein AWRIB429_0001 [Oenococcus oeni AWRIB429] Length = 450 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 150/473 (31%), Positives = 234/473 (49%), Gaps = 35/473 (7%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFL-KAWIKNRYL 90 + + + + R +G Y +W + ++ V + V L P + + +AW Y Sbjct: 7 DLNTFWKGIQGRFAANMGETAYENWIKPVRAVKVDLANRTVELQAPNDIVMQAWDNGNYT 66 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + E+ V V V S+ S + Sbjct: 67 AKFMEYAYDVAHDFFKPELKVIKVVANPVNNQKSNQSNSDFVAT---------------- 110 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ F F T++ G +N +A +AA +++E Y NPL I+ S GLGKT Sbjct: 111 ----DYQLNQNFTFDTWVIGDANELATSAAMAVSEQPGRQY-----NPLLIYGSSGLGKT 161 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HL++AI N + QP+ V Y+T + FM + +AI + + N+DLLL+DD+Q Sbjct: 162 HLMEAIGNRLKELQPDAIVRYITTDDFMNDWVNAISKKTTADFTSTYENVDLLLVDDIQM 221 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQGK Q EF ++ N + S KQ+V +D P ++ L+ R+ SR GV+ + D+ Sbjct: 222 LQGKDRFQEEFFNIFNKITKSQKQIVMTSDVLPKDIPGLNARLVSRFMQGVAYDIQKPDF 281 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT 389 R +ILKN + E+ ++I+ + L +A + T+ REL+GAFN L + Sbjct: 282 PTRLAILKN-----KSEEVGISIDNQTLTLIAEQIDTNVRELEGAFNTLTLMARAGRPIN 336 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A ++L HL N K + + DIQ+ VA YN+S NDL+ +R +V PRQVAMYL Sbjct: 337 VSNAQKILEHL-NITRQKVITLPDIQKTVADDYNVSINDLIGKKRNSDIVLPRQVAMYLI 395 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T S P+IG+ FG RDHTTV+H K+ ++ETD LK+ +E L I E Sbjct: 396 RTLTDTSLPKIGQAFGGRDHTTVMHGTEKIADLIETDYALKQRIENLSTKIKE 448 >gi|238025685|ref|YP_002909916.1| chromosomal replication initiator protein DnaA [Burkholderia glumae BGR1] gi|237874879|gb|ACR27212.1| Chromosomal replication initiator protein DnaA [Burkholderia glumae BGR1] Length = 534 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 122/349 (34%), Positives = 197/349 (56%), Gaps = 13/349 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKTHL+ Sbjct: 196 RSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGVSY-----NPLFLYGGVGLGKTHLIH 250 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 251 AIGNQLLLDKSGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGK 310 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR Sbjct: 311 SRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRV 370 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + + ++++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 371 AIL-----MRKAQSEGVSLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIEL 425 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K + Sbjct: 426 TKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKEL 484 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 485 TQKSLPEIGELFGGRDHTTVLHAVRKIADERGKDAQLNHELHVLEQTLK 533 Score = 75.1 bits (183), Expect = 3e-11, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 6/101 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + LS P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDATAQTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 + L ++ I V+ V P S+P++ + Sbjct: 62 SDLARD----FWKAPIDVQFVLDPKAGARGSAPAVAPRPSV 98 >gi|254417773|ref|ZP_05031497.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] gi|196183950|gb|EDX78926.1| chromosomal replication initiator protein DnaA [Brevundimonas sp. BAL3] Length = 479 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 156/472 (33%), Positives = 253/472 (53%), Gaps = 9/472 (1%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + I+ S RL+ ++G ++S+ + L PT + + W++ L Sbjct: 11 TDPDRIWNEASVRLRAEIGDGPFSSYIAPSAVRVDSSGQLILVTPTAYARDWVRKNALRR 70 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTAS-SPSITKLSPINTNISKSPIILGKQTIS 151 + +L+ + +++ R+ + +A + ++ +P + + Sbjct: 71 MNELWLGLDGLNRRLDVRCRAEVGSAPPASAVIAGNVLDATPRLAAFASPTVPPIADGAR 130 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V + L R F +F+EG N AL A+ +A + NP+F G GKTH Sbjct: 131 AVRAAGLQDRLTFDSFVEGQGNAFALAIAKQVA-----SWADGHFNPVFFCGPYGYGKTH 185 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AIA + + +P +VVYLTAE F+ F A++D K+SLR+ D+LL+DD+QF+ Sbjct: 186 LLNAIAWEAQRLRPEAKVVYLTAERFLSTFVKAMQDRSTAAFKESLRSADMLLLDDVQFV 245 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q E L +L++ K++V +ADR P L ++PR+RS L G++ P+ D E Sbjct: 246 GGKTSTQEELLSTLTALIEDGKRIVFSADRAPMALTEVEPRLRSHLAAGLTCPVEAGDRE 305 Query: 331 MRFSILKNRL-AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPIL 388 ++ ++ +NRL A+S + EVL + S REL+GA N L S + Sbjct: 306 LKIAVAQNRLKALSALGVVQGEAAPEVLAQLVDRTPGSMRELEGAVNTLAAAAGSRLATV 365 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + + A LL + G +++ +++IQ+ VA H+N+ + DLLS RR R+V RPRQ+AMYL Sbjct: 366 SVDEASILLGAALRGGPERRITVDEIQKTVADHFNLKQADLLSERRTRSVARPRQMAMYL 425 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K T RS+P+IGRRFG RDHTTVLH VRK+E+++ D + ++VE L R + Sbjct: 426 CKQHTTRSYPDIGRRFGGRDHTTVLHGVRKIEELMAQDDQIARDVEALTRKL 477 >gi|225867618|ref|YP_002743566.1| chromosomal replication initiator protein [Streptococcus equi subsp. zooepidemicus] gi|259645261|sp|C0MC62|DNAA_STRS7 RecName: Full=Chromosomal replication initiator protein DnaA gi|225700894|emb|CAW97552.1| chromosomal replication initiator protein [Streptococcus equi subsp. zooepidemicus] Length = 450 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 138/478 (28%), Positives = 232/478 (48%), Gaps = 35/478 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ Y + + V +++ + +K + Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLIKVDNHVATI------FLDQMKELFW 54 Query: 91 E-TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 E + + + +I V V ++ + + Sbjct: 55 EKNLKDVILTAGFEVYNAQIAVDYVYEDNLMIE------------QQHQGQQGYTEQAFQ 102 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLGK Sbjct: 103 QLPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLGK 157 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q Sbjct: 158 THLLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFRNLDLLLIDDIQ 217 Query: 270 FLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 SLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITP 277 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PDFETRVAILTN-----KIQEYNFVFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQ 332 Query: 387 I--LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 I +T +IA E + G + IE+IQ V K Y ++ ++ + +R + +V RQ Sbjct: 333 IDTITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQDIVLARQ 392 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 VAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIGQDESLRIEIETIKNKIK 450 >gi|329960254|ref|ZP_08298696.1| replication initiator protein DnaA [Bacteroides fluxus YIT 12057] gi|328532927|gb|EGF59704.1| replication initiator protein DnaA [Bacteroides fluxus YIT 12057] Length = 465 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 121/475 (25%), Positives = 237/475 (49%), Gaps = 18/475 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+N ++ +++ V Y +WF + + + VP+ F ++++++++ Sbjct: 3 EINHVGLWNRCLEIIRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDKFVD 62 Query: 92 TITKLFQEEHSRIQG--VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + K + ++V + P S T ++P I+K+ + Sbjct: 63 LLRKTLYKVIGEGTKLMYNVMVDKSSRPEKTINLESTHRTIIAPQKPVITKAIPEIPIPE 122 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + P L+ + F TFIEG SN+++ + A+++A + NPLF++ + G+GK Sbjct: 123 LDP----HLNPEYNFETFIEGYSNKLSRSVAEAVALNPAK----TIFNPLFLYGASGVGK 174 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL AI + P RV+Y++A F ++ ++R+N + + + ID+L+IDD+Q Sbjct: 175 THLANAIGTKIKELYPEKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQTIDILIIDDIQ 234 Query: 270 FLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L Sbjct: 235 EFAGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELERPT 294 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPI 387 E+R +IL+N + L EV+ ++A V S R+L+G ++ + + Sbjct: 295 VELRKNILRN-----KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKD 349 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E+A ++ +VN+ +K + ++DI V KH+ + + + R R VV+ RQ+AM+ Sbjct: 350 IDLELAQRIVRKVVNSD-SKAITVDDIINTVCKHFGLETATIHTKSRKREVVQARQIAMF 408 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 L+K T S +IG G +DH TVLHA + ++++ E D + E + ++ + + Sbjct: 409 LAKSYTDFSTAKIGTLIGHKDHATVLHACKTIKELKEVDKAFRAEFDEIQAALKK 463 >gi|322377905|ref|ZP_08052393.1| replication initiation protein DnaA [Streptococcus sp. M334] gi|321281081|gb|EFX58093.1| replication initiation protein DnaA [Streptococcus sp. M334] Length = 453 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 233/474 (49%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + + T S S + K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFTKPQDTTISQVEEATNSTLYD-------YSPKLASIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVSQMLVIPIDKIQNEVGNFYGVSIKEMKGSRRLQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKIK 453 >gi|329116547|ref|ZP_08245264.1| chromosomal replication initiator protein DnaA [Streptococcus parauberis NCFD 2020] gi|326906952|gb|EGE53866.1| chromosomal replication initiator protein DnaA [Streptococcus parauberis NCFD 2020] Length = 453 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 146/479 (30%), Positives = 242/479 (50%), Gaps = 34/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + + ++Q+ Y + + SV + I + +K + Sbjct: 1 MTENEQIFWNRILELAQSQLKQATYEFFVLDARLISVDNQIATIY------LERMKELFW 54 Query: 91 E-TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 E + + + +I V+ V S+E + +++P + IS+ P I Sbjct: 55 EKNLKDVILTAGFEVYNQQISVQYVFEDSLENEIITELPGRMTPSSQTISRLPAINPD-- 112 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLGK Sbjct: 113 --------LNPKYGFDNFIQGDENRWAVAASIAVANTPGSTY-----NPLFIWGGPGLGK 159 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI N+ ++ P+ RV Y++AE F+ F + IR + LK+ RN+DLLLIDD+Q Sbjct: 160 THLLNAIGNSVLQDNPHARVKYISAENFINEFVTHIRLDKMDELKEVFRNLDLLLIDDIQ 219 Query: 270 FLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 220 SLAKKTLAVTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEERLVTRFKWGLTVNITP 279 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D+E R +IL N + +D + + ++A +S R+L+GA + +F Sbjct: 280 PDFETRVAILTN-----KIQDYSFTFPQSTIEYLAGQFDSSVRDLEGALKDISLVANFKQ 334 Query: 387 I--LTAEIADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I ++ E+A E + K + IE IQ V K Y++S ++ + +R + +V R Sbjct: 335 IDVISVELAAEAIRARKQDSPNKIRVIPIETIQEQVGKFYDVSVKEIKATKRTQDIVLAR 394 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAMYL++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 395 QVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIVDDESLRIEIETIKNKIK 453 >gi|302381117|ref|YP_003816940.1| chromosomal replication initiator protein DnaA [Brevundimonas subvibrioides ATCC 15264] gi|302191745|gb|ADK99316.1| chromosomal replication initiator protein DnaA [Brevundimonas subvibrioides ATCC 15264] Length = 478 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 161/472 (34%), Positives = 252/472 (53%), Gaps = 11/472 (2%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + I+ S RL+ ++G ++S+ + L PT + + W++ L Sbjct: 12 TDPDRIWNEASVRLRAEIGEGPFSSYIAPSAVRIDAAGNLILVTPTGYARDWVRKNALRR 71 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG-KQTIS 151 + +L+ + ++ VR A S AS+ ++ LS + +P I Sbjct: 72 LNELWLGLDGLSRRLD--VRCRAEVSSAPPASAVALPSLSSVGLETPVAPTIAPVTDGAR 129 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 V + L R F +F+EG N AL A+ A + NP+F G GKTH Sbjct: 130 AVRAAGLQERLTFDSFVEGQGNAFALAIARQTA-----SWADGHFNPIFFCGPYGYGKTH 184 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AIA + + +P+ +VVYLTAE F+ F A++D K+SLR+ D+LL+DD+QF+ Sbjct: 185 LLNAIAWEAQRLRPDAKVVYLTAERFLSTFVKAMQDRSTAAFKESLRSADMLLLDDVQFV 244 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q E L +L++ K++V +ADRPP L ++PR+RS L G++ P+ D Sbjct: 245 GGKASTQEELLSTLTALIEDGKRIVLSADRPPMALTEVEPRLRSHLAAGLTCPVEPADRS 304 Query: 331 MRFSILKNRLAI-SQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPIL 388 ++ ++ +NR+A ++ EVL + S REL+GA N L L Sbjct: 305 LKIAVAQNRIAAFARLGVVNGEAQREVLEQLVDRTPGSVRELEGAVNTLAAAAGPRLTSL 364 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + A LL + G +++ +++IQ+ VA+H+N+ + DLLS RR R V RPRQ+AM+L Sbjct: 365 GVDEALTLLGSALRGGPERRITVDEIQKTVAEHFNMKQADLLSERRTRAVARPRQIAMWL 424 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K T RS+P+IGRRFG RDHTTVLH VRK+E+++ D + K+VE L R + Sbjct: 425 CKQHTTRSYPDIGRRFGGRDHTTVLHGVRKIEELMPLDDQIAKDVEALTRKL 476 >gi|256545950|ref|ZP_05473305.1| ATPase involved in DNA replication initiation [Anaerococcus vaginalis ATCC 51170] gi|256398372|gb|EEU11994.1| ATPase involved in DNA replication initiation [Anaerococcus vaginalis ATCC 51170] Length = 464 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 142/482 (29%), Positives = 249/482 (51%), Gaps = 26/482 (5%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGP-DVYASWFQRLKFHSVLHNIVHLSVP---TNFLK 82 K ++N E I + ++K V Y +W LK + + ++L +P T F+ Sbjct: 1 MKESCKMNLEYITNELKEKMKMNVPDLQQYETWIGILKPLNKYEDTIYLEIPKNDTKFIF 60 Query: 83 AWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 I L++I + + +EI+ + + N++K P Sbjct: 61 DQIWVPQLQSILNDINKRENTAYKIEIVAKDGPNYDEVLSLGKNVDDDGQLRLNNVNKYP 120 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 L L+ VF F++G SN++AL A+QS+AE ++ + NPLFI+ Sbjct: 121 KPL------------LEKNNVFKNFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIY 168 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 + GLGKTHL+QAIA+ ++++ + V+YL++E F SA+R+N + R++D+ Sbjct: 169 GASGLGKTHLMQAIAHEILEKRDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDM 228 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LLIDD+QF+ K Q EF H L + KQ+V ++DRPP E++ L+ R+ SR G+ Sbjct: 229 LLIDDIQFIANKTGTQEEFFHTFEDLYNQGKQIVISSDRPPKEIKHLEDRLVSRFGWGII 288 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + D+E R +IL+ ++++ ++ ++L ++A + T+ R+L+GA + Sbjct: 289 VDISKPDFETRVAILQK-----KQDELGAVVDYKILEYIAENIETNIRDLEGALATSIAC 343 Query: 382 H--SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + ++ E A +S V+ KK+ EDIQ+ VA+ Y++ DL R + +V Sbjct: 344 AKSNNRSFVSLEDARLGVSSRVHND-RKKINAEDIQKKVAERYHVKLADLRGKSRKKEIV 402 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PRQ+AMYL + + S + F +RDHTTV+H K++ ++E D ++E+E + + Sbjct: 403 MPRQIAMYLCRDLLSISLVSLANEF-NRDHTTVMHGHDKIKDLMEEDQDFRQEIEDIIKE 461 Query: 500 IS 501 I Sbjct: 462 IK 463 >gi|225869488|ref|YP_002745435.1| chromosomal replication initiator protein [Streptococcus equi subsp. equi 4047] gi|254777914|sp|C0M7C0|DNAA_STRE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|225698892|emb|CAW91873.1| chromosomal replication initiator protein [Streptococcus equi subsp. equi 4047] Length = 450 Score = 402 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 140/477 (29%), Positives = 236/477 (49%), Gaps = 33/477 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ Y + + V +++ + +L Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLIKVDNHVATI--------------FL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF E++ + IL + + + L + + Sbjct: 47 DQMKELFWEKNLKDV---ILTAGFEVYNAQIAVDYVYEDDLMIEQQHQGQQGYTEQAFQQ 103 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLGKT Sbjct: 104 LPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLGKT 158 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q Sbjct: 159 HLLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFRNLDLLLIDDIQS 218 Query: 271 LQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 219 LAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITPP 278 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 279 DFETRVAILTN-----KIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQI 333 Query: 388 --LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T +IA E + G + IE+IQ V K Y ++ ++ + +R + +V RQV Sbjct: 334 DTITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQDIVLARQV 393 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 394 AMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIGQDESLRIEIETIKNKIK 450 >gi|291543411|emb|CBL16520.1| chromosomal replication initiator protein DnaA [Ruminococcus sp. 18P13] Length = 455 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 141/473 (29%), Positives = 226/473 (47%), Gaps = 34/473 (7%) Query: 39 FTIVSSRLKN------QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 F V ++K +G W L S+ L + F K + N + Sbjct: 4 FAEVFEQVKKYCIEVGNIGDVAINLWINTLIPVSLDGTKAVLQCNSEFQKGVVLNNFKSL 63 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + F+ +EI++ S +K A I +L + + KS Sbjct: 64 LQEGFRNTLGFDVELEIIIES------QKPAEKVDIQELEKKHAQLEKSFEGAEYD---- 113 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + F TFI G SN A A ++A+ D + NPLFI+ GLGKTHL Sbjct: 114 ---------YTFDTFIVGKSNEFAYAACTAVAKHD-RNKASDTYNPLFIYGPSGLGKTHL 163 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN-CALNLKDSLRNIDLLLIDDMQFL 271 + AIAN + PNL +VY+T E F AI+ D RN D+LL+DD+QF+ Sbjct: 164 MTAIANEMRRNDPNLNIVYVTGETFANELIEAIQKKQDTSLFHDKYRNADVLLVDDVQFI 223 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N L KQ+V +DRPP +++ L+ RIRSR + G+ + D+E Sbjct: 224 AGKDSTQEEFFHTFNKLHSEGKQIVLTSDRPPKDIKILEDRIRSRFESGLIADISTPDFE 283 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF-RHSFAPILT 389 R +I++ + E LN+ +EV +A + T+ R+L+GA +L +H + Sbjct: 284 TRIAIIRR-----KAELLDLNLPDEVAEFIANRLKTNIRQLEGAVKKLKALKHLAGSQPS 338 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A ++ ++ + + +E I VA Y +S +D+ SN+R + R+VA+Y+ Sbjct: 339 IAMAQSVIRDILTDDQPIPITVEKIIAEVANVYGVSPDDIRSNKRSSQISNARKVAIYVV 398 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +T IG FG RDH+T+++AV + + ++ D +LK+ VE L + I E Sbjct: 399 REITQMPLASIGMEFGGRDHSTIVYAVNSISQSIQKDSSLKELVETLIKNIRE 451 >gi|134096621|ref|YP_001102282.1| chromosomal replication initiation protein [Saccharopolyspora erythraea NRRL 2338] gi|291005725|ref|ZP_06563698.1| chromosomal replication initiation protein [Saccharopolyspora erythraea NRRL 2338] gi|133909244|emb|CAL99356.1| chromosomal replication initiator protein DnaA [Saccharopolyspora erythraea NRRL 2338] Length = 592 Score = 402 bits (1032), Expect = e-109, Method: Composition-based stats. Identities = 114/370 (30%), Positives = 200/370 (54%), Gaps = 12/370 (3%) Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + + P + L++++ F TF+ G+SNR A V + Sbjct: 228 APEAQQGQPFTAPKHAPPTSQTRLNAKYTFDTFVIGASNRF-----AHAAAVAAAEAPAR 282 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLFI GLGKTHLL A+ + + + P +RV Y++ E F F +++RD+ + + Sbjct: 283 AYNPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRQVAFQ 342 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R++D+LL+DD+QFL+GK Q EF H N+L +S KQ+V ++DRPP L +L+ R+R Sbjct: 343 RRYRDVDVLLVDDIQFLEGKEGTQEEFFHTFNTLHNSNKQIVVSSDRPPKGLRTLEDRLR 402 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +R + G+ + + E R +IL+ + A + +N +VL +A + + REL+G Sbjct: 403 TRFEWGLITDIQPPELETRIAILRKKAAQDR-----MNAPADVLEFIAARIERNIRELEG 457 Query: 374 AFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A ++ S + ++A+ +L L+ +T ++ I + A ++++ +DL Sbjct: 458 ALIRVTAFASLNRQPVDVQLAEIVLRDLIPDSQTPEITAPTIMAVTADFFSVTIDDLCGP 517 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 + + + + RQ+AMYL + +T S P+IG+ FG RDHTTV+HA +K+ K + + + Sbjct: 518 GKTKALAQARQIAMYLCRELTDSSLPKIGQSFGGRDHTTVMHADKKIRKEMAERRRVYDQ 577 Query: 493 VELLKRLISE 502 V+ L I + Sbjct: 578 VQELTSRIKQ 587 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 8/146 (5%) Query: 32 EVNCESIFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + ++ V L + + P +W + + +L L+ P++F K I+ Sbjct: 5 QADLGRVWEEVVQELSSGTLSPQQ-RAWMRVTRPIGLLDGTALLAAPSDFAKEAIERALR 63 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS--ITKLSPINTNISKSPIILGKQ 148 E IT R + + V + T+ S + G Sbjct: 64 EPITDALSRRLGRDVSLAVKVDTAVQAPSRPAPPPAESWPTRDSITGPDRPTGFAEAGVS 123 Query: 149 TISPVFGSPLDSRFVFSTF---IEGS 171 S L +F + GS Sbjct: 124 PYISTSSSYLQPPRT-DSFTPPVTGS 148 >gi|187922036|ref|YP_001893678.1| chromosomal replication initiation protein [Burkholderia phytofirmans PsJN] gi|226735790|sp|B2SZ75|DNAA_BURPP RecName: Full=Chromosomal replication initiator protein DnaA gi|187713230|gb|ACD14454.1| chromosomal replication initiator protein DnaA [Burkholderia phytofirmans PsJN] Length = 545 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 129/388 (33%), Positives = 210/388 (54%), Gaps = 17/388 (4%) Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 LPS++ ++ + P + S +T S S L+ F F+ G +N++ Sbjct: 172 LPSLDANEAAAARRTWRPGQSASSNG----NGETDSMYERSKLNPVLTFDNFVTGKANQL 227 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ AE Sbjct: 228 ARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLMDKAGARIRYIHAE 282 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV Sbjct: 283 QYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQV 342 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +D P E+ +D R+ SR G++V + + EMR +IL + + + +++NE Sbjct: 343 IITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEFVSLNE 397 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 +V VA+ + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+ Sbjct: 398 DVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVTKEALKDLL-TVQNRQISVEN 456 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQ+ A Y+I D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVL Sbjct: 457 IQKTTADFYSIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVL 516 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HAVRK+ D L E+ +L++ + Sbjct: 517 HAVRKIADERSKDAQLNHELHVLEQTLK 544 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 + ++ V+ ++ A Sbjct: 62 ADMARDFWQAPVDVQFVLDPKA 83 >gi|94993397|ref|YP_601495.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS10750] gi|123080159|sp|Q1J960|DNAA_STRPF RecName: Full=Chromosomal replication initiator protein DnaA gi|94546905|gb|ABF36951.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes MGAS10750] Length = 451 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 143/479 (29%), Positives = 243/479 (50%), Gaps = 36/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ Y + + V +I + YL Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLLKVDKHIATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF E++ + ++++ + + + + I N +K +Q + Sbjct: 47 DQMKELFWEKNLK----DVILTAGFEVYNAQISVDYVFEEDLMIEQNQTKINQKPKQQAL 102 Query: 151 S--PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + P S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLG Sbjct: 103 NSLPTVTSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+ Sbjct: 158 KTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217 Query: 269 QFLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 Q L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 QSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNIT 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PPDFETRVAILTN-----KIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFK 332 Query: 386 PI--LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I +T +IA E + G + IE+IQ V K Y ++ ++ + +R + +V R Sbjct: 333 QIDTITVDIAAEAIRARKQDGPKMTVIPIEEIQTQVGKFYGVTVKEIKATKRTQNIVLAR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 QVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKIK 451 >gi|2109445|gb|AAC45336.1| initiator protein [Streptococcus pneumoniae] Length = 453 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 139/474 (29%), Positives = 233/474 (49%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + + T+S + K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFTKPQDTTSSQGEEATNLTLYD-------YSPKLVSIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKIK 453 >gi|307705907|ref|ZP_07642745.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK597] gi|307620568|gb|EFN99666.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK597] Length = 453 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 237/475 (49%), Gaps = 28/475 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS- 151 + + I EI + + P T +S + + + + S Sbjct: 57 LKDIIVVAGFEIYDAEITPHYI--------FTKPQDTAISQVEEATNSTLYDYSPKLASI 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQNEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKIK 453 >gi|225850462|ref|YP_002730696.1| chromosomal replication initiator protein DnaA [Persephonella marina EX-H1] gi|225646033|gb|ACO04219.1| chromosomal replication initiator protein DnaA [Persephonella marina EX-H1] Length = 437 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 143/466 (30%), Positives = 242/466 (51%), Gaps = 35/466 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ + S + +++ P + ++ + +++S P K W++N L+ I Sbjct: 2 DVWGNILSSMSSKLDPSTLKL-LKGVEKAEYRNGELYISAPDPVYKDWLENNLLDEIKIS 60 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +L + I P+ SK P + Sbjct: 61 ASSLFGENLKIFVL-----------SEDEEDIYIDEPVQKVESK-----------PYRLT 98 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ +FVFS FI G+ N++A +A S+AE Y NPLFI+ +GLGKTHLL A Sbjct: 99 NLNPKFVFSNFIVGNCNKIAYSACMSVAENLGKIY-----NPLFIYGGIGLGKTHLLHAT 153 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 A+ + + P+ ++Y TA+ FM +++ L + R++DLLLIDD+QFL+GK Sbjct: 154 AHYVLSKNPDANIIYTTADTFMSELIYYMQNGSVLEFRRRYRDVDLLLIDDVQFLEGKER 213 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q E H+ N+L KQV+ ++D PP L+ L R++SR G+ V + D + + SI Sbjct: 214 TQIELYHIFNALHLIGKQVILSSDTPPKNLKGLQERLKSRFVSGLVVEVKAPDLQTKISI 273 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIAD 394 + + D + + +V++ +A+T+ T+ REL+G+ ++L +T ++A Sbjct: 274 INK-----KSRDMNIKLPNDVILLIAKTINTNIRELEGSLSKLKAYSEILGRPVTFDMAR 328 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+L ++ E +++ IE IQR V+ ++ ++ N+LL N R + V RQ+AMYLS+ +T Sbjct: 329 EVLKDILEIKEVEELSIEKIQREVSNYFGVNINELLGNSRKKKVATARQIAMYLSRYLTD 388 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RS EI + F +DH+TV++AV KVEK +E D + VE LK I Sbjct: 389 RSLSEISKAFKKKDHSTVINAVEKVEKNMEKDRKFRLTVEFLKEKI 434 >gi|262277742|ref|ZP_06055535.1| chromosomal replication initiator protein DnaA [alpha proteobacterium HIMB114] gi|262224845|gb|EEY75304.1| chromosomal replication initiator protein DnaA [alpha proteobacterium HIMB114] Length = 462 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 159/465 (34%), Positives = 258/465 (55%), Gaps = 25/465 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + IV +LK G DVY SW Q ++ + + + L V T F++ WI + Y + I +Q Sbjct: 17 WEIVQQKLKETYGLDVYKSWIQNVEAKGIDFSSLILVVKTRFVRDWIVSHYADKILDHYQ 76 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + + + ++ + + + N S + + + + Sbjct: 77 KLDNSVSRIQFEINEI-------------FDEKRSTNILDFGSGTKIIDLKDTNYGINRI 123 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D R F +F+ G SN++A +AA+ + E H NPL+I+ VGLGKTH+L AI N Sbjct: 124 DPRLNFESFVTGESNQLAFSAAKRVTESLGH------YNPLYIYGGVGLGKTHILNAIGN 177 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQ 277 + + +V+YL+AE FM++F +I++ K+ RN D+L++DD+QF+ GK Q Sbjct: 178 QLKQM--DKKVIYLSAERFMYQFVKSIKNKDTHKFKEIFRNADVLILDDIQFISGKEVTQ 235 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF + NSLL++ QVV + DR P+EL+ + RI+SRL GG+ V + D +R ILK Sbjct: 236 EEFFYTFNSLLENQSQVVISCDRSPNELDRIQDRIKSRLSGGLVVDVQPPDIGLRLEILK 295 Query: 338 NRLAISQKED-PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 R + ++ IN+E+L ++ +S R++ G N+++ T + A Sbjct: 296 KRCLAEKNHFGNEILINDEILSFISNEFKSSVRDMLGVLNRVIASARIQNKTPTLQDAKL 355 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L L+N ++ + IEDIQ++V +YN+S ND LS RR R + RPRQ+AMYLSK +T + Sbjct: 356 ILKDLLNNMQS-VISIEDIQKIVVAYYNLSMNDFLSARRSRHIARPRQIAMYLSKKLTTK 414 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S PEIGR+F RDHTTV+HA++K+E+++ D + EV+ + I Sbjct: 415 SLPEIGRKFTGRDHTTVIHAIKKIEELMSKDRQFEHEVQSITDRI 459 >gi|38232643|ref|NP_938410.1| chromosomal replication initiation protein [Corynebacterium diphtheriae NCTC 13129] gi|61212619|sp|Q6NKL7|DNAA_CORDI RecName: Full=Chromosomal replication initiator protein DnaA gi|38198901|emb|CAE48512.1| chromosomal replication initiator protein [Corynebacterium diphtheriae] Length = 552 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 122/388 (31%), Positives = 204/388 (52%), Gaps = 14/388 (3%) Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 +P + A + + S + K P L+ R+ F T++ SN++ Sbjct: 172 MPDRRRYAEQQQVPQRS--EEPVMGQRRAREKPAHDPDRNGSLNPRYTFDTYVVSDSNKL 229 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 +AA ++AE + Y NPLFI GLGKTHL+ AI N + + P L+V Y+++E Sbjct: 230 PWSAAWAVAEKPARAY-----NPLFIWGDSGLGKTHLMHAIGNYAQELDPKLKVKYVSSE 284 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQV 294 F + +++RD+ K R++D+L++DD+QFLQGK Q EF H N+L + KQ+ Sbjct: 285 EFTNDYINSVRDDRQEAFKRRYRDLDILMVDDIQFLQGKEGTQEEFFHTFNALQQADKQI 344 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V ++DRPP +L +L+ R+R+R Q G+ + D E R +IL +++ + + Sbjct: 345 VLSSDRPPKQLTTLEDRLRTRFQSGLIADIYPPDLETRIAIL-----LNKASAEGITADR 399 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIED 413 +VL +A S REL+GAF ++ S + A E L ++ ++ Sbjct: 400 DVLELIASRFNASIRELEGAFIRVSAYASLNEAPINMATAQEALRDMMPEQADIEITAGM 459 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I + A++++I + L + + R+V PRQ+AMYL + +T S P+IG FG +DHTTV+ Sbjct: 460 IMSVTAEYFHIDVDTLKGSGKSRSVAHPRQLAMYLCRELTDLSLPKIGEHFGGKDHTTVM 519 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 +A RK+ K + E++ L + I Sbjct: 520 YAYRKIGKEITEKRDTYDEIQQLTQQIK 547 >gi|298373770|ref|ZP_06983759.1| DNA replication initiator protein, ATPase [Bacteroidetes oral taxon 274 str. F0058] gi|298274822|gb|EFI16374.1| DNA replication initiator protein, ATPase [Bacteroidetes oral taxon 274 str. F0058] Length = 458 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 123/467 (26%), Positives = 240/467 (51%), Gaps = 16/467 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ +K+ + + +WF+ + S ++ + L VPT F +I+ +Y + ++ Sbjct: 6 DLWNKCLGVIKDNISDSAFTTWFKPIIPLSYINKEIVLQVPTMFFYEYIEEKYSDLLSAT 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 ++ S V +L R + T P+ K +T ++ + + T+ S Sbjct: 66 IKKITSCEDTV-LLYRVLMDKENNTTTDVPTTKKAQ--STTQTQKIVSPFENTVDVNIDS 122 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L + F +IEG SN++ +A ++A+ NPLFI + G+GKTH+ AI Sbjct: 123 QLIEHYTFDNYIEGRSNKLVRSAGINVAQNPGK----TMFNPLFIFGNSGVGKTHVSNAI 178 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM-QFLQGKL 275 +R PN RV+Y++A F ++ A+R N N + +++D+L+IDD+ QF+ Sbjct: 179 GLEVKRRFPNKRVLYVSANLFELQYTDAVRYNNKNNFLNFYQSLDVLIIDDIHQFMSKPG 238 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q F ++ + + KQ++ DR PSEL ++ R+ +R + G++ + D E+R +I Sbjct: 239 TQSTFFNIFDHIHRLGKQIILTCDRQPSELNGMEERLLTRFRWGLTAEITKPDIELRKNI 298 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIAD 394 L++ + ++ L+ E+V+ +A +T + R+L+GA L+ + ++ E+A Sbjct: 299 LRH-----KIKENGLHFPEDVVCFIAENITENIRDLEGAVISLLAHSTINNEDISIELAK 353 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +++ + + KK+ + I +V +HY++S L S R V + RQ+AMYLS+ T Sbjct: 354 KIID--ITPKDKKKVNVGYICDIVCEHYSLSAETLNSKSRKAEVAQARQIAMYLSRKHTS 411 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +S I G R H TV+H+ + +E +++ D L +++++L+ I Sbjct: 412 QSLDSIATTIGGRTHATVIHSCKLIENLIKQDKHLLQDIQILEEKIK 458 >gi|256823906|ref|YP_003147866.1| chromosomal replication initiator protein DnaA [Kytococcus sedentarius DSM 20547] gi|256687299|gb|ACV05101.1| chromosomal replication initiator protein DnaA [Kytococcus sedentarius DSM 20547] Length = 506 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 142/506 (28%), Positives = 233/506 (46%), Gaps = 46/506 (9%) Query: 32 EVNCESIFTIVSSRLKNQ-VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + +I+ L+ + P + +L L+V + +K ++ Sbjct: 6 DDHATAIWQEAMVHLQGAGLAPRDIGV-LRLATLVGLLEGTALLAVKYDHVKDAVEGHLR 64 Query: 91 ETITKLFQEEHSRIQGVEILVRSVAL----------------PSVEKTASSPSITKL--- 131 E ++ E R + + V A+ T P T + Sbjct: 65 EDVSTALAEVLDRDIRLAVSVDPDAVSAAQEEAAPPAPSPADEDDPATGEGPLSTAVDGA 124 Query: 132 -------SPINTNISKSPIILGKQTISPVFG------SPLDSRFVFSTFIEGSSNRVALT 178 SP S +P T + S L+ ++ F TF+ GSSNR Sbjct: 125 VEKHEGSSPARAGESVAPATTASLTATNSSPGVERDYSALNHKYTFDTFVLGSSNRF--- 181 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 A NPLFI+ GLGKTHLL AI + + ++RV Y+ +E F Sbjct: 182 --AHAAATAVAEAPARAYNPLFIYGGSGLGKTHLLHAIGHYARTLDSSVRVKYVNSEEFT 239 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 +F +A+ A + R++D+LLIDD+QFLQGK EF H N+L +S KQ+V Sbjct: 240 NQFINAVSAGQANAFQRQYRDVDVLLIDDIQFLQGKEQTMEEFFHTFNTLHNSEKQIVIT 299 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +D+PP +L R+RSR + G+ + D E R +IL+ + A + L+I ++VL Sbjct: 300 SDQPPKKLSGFAERMRSRFEWGLLTDVQPPDLETRIAILRRKAAADK-----LDIPDDVL 354 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A ++++ REL+GA ++ S L +A +L ++ G++ ++ I Sbjct: 355 HLIASKISSNIRELEGALTRVTAFASLSGSPLDEYLARTVLKDVMPGGDSGQITPTMILE 414 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 A ++ IS ++ R R + R RQ+AMYL + +T S P+IG+ FG RDHTTV+HA Sbjct: 415 ETAGYFVISVEEIQGASRSRNLTRARQIAMYLCRELTDLSLPKIGKEFGGRDHTTVMHAE 474 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 RK++++L D + EV L +I + Sbjct: 475 RKIKQLLGEDRRVYDEVSELTSIIRK 500 >gi|14195657|sp|P46388|DNAA_MYCLE RecName: Full=Chromosomal replication initiator protein DnaA Length = 502 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 133/500 (26%), Positives = 242/500 (48%), Gaps = 46/500 (9%) Query: 37 SIFTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 +++ V S L + + P +W ++ +++ LSVP++F Sbjct: 11 TVWNAVVSELNGESNTDDEATNDSTLVTPLTPQQ-RAWLNLVQPLTIIEGFALLSVPSSF 69 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 ++ I+ IT + + + + + ++ +SS + T+ + Sbjct: 70 VQNEIERHLRTPITDALSRRLGQQIQLGVRIAPPSTDHIDDNSSSADVLLTDDCGTDTDE 129 Query: 141 ---SPIILGKQTISPVF-------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 P+ Q + F G+ L+ R+ F TF+ G+SNR A Sbjct: 130 NYGEPLTGEYQGLPTYFTERPHHTESTVTGGTSLNRRYTFETFVIGASNRF-----AHAA 184 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI GLGKTHLL A N + + P +RV Y++ E F F ++ Sbjct: 185 ALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINS 244 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP Sbjct: 245 LRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPK 304 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L +L+ R+R+R + G+ + + E R +IL+ + + +L + +VL +A + Sbjct: 305 QLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPGDVLELIASS 359 Query: 364 VTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + + REL+GA ++ S + +A+ +L L+ T ++ I A+++ Sbjct: 360 IERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMTATAEYF 419 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 + + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 420 DTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSE 478 Query: 483 LETDITLKKEVELLKRLISE 502 + + V+ L I + Sbjct: 479 MAERREVFDHVKELTTRIRQ 498 >gi|309379508|emb|CBX21874.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 551 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 148/536 (27%), Positives = 247/536 (46%), Gaps = 77/536 (14%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 L + + + RL + + P +A W L + + F +K+R+ Sbjct: 27 LSMTLAEFWPMCLRRLHDTLPPGQFAQWIAPLTVGE-EDGVWVVYGKNQFACNMLKSRFA 85 Query: 91 ETITKLFQEEHS----------------------------RIQGVEILVRSVALPSVEKT 122 I L +E R E+ R+ ++ Sbjct: 86 GKIEALREECAPERAAFVFKAGEGVRYEMAAAGVAEKPPVREVRDELPARAALSEAMPSE 145 Query: 123 ASSPSITKLS--------------------PINTNISKSPIILGKQTISPVFGS------ 156 A S ++ + P + + P++ + + + Sbjct: 146 APSEPPSEGAAKLSAAKTATDILAERMKNLPHGSRSAAEPVLRPEPQAAAKARTDAQGGA 205 Query: 157 --------PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L + F T +EG NR+A AAQ+IAE Y NP F++ S GLG Sbjct: 206 EEARYEQTNLSRDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLG 260 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QA+ N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+ Sbjct: 261 KTHLVQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDI 320 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF++GK EF +L N + KQ++ D P+++E +D R++SR G+++ L Sbjct: 321 QFIKGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPP 380 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-- 385 + EMR +IL+ + E ++I +E + +A + ++ REL+GAFN++ F Sbjct: 381 ELEMRVAILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNR 435 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 P++ ++A L ++ K + + I VAK+Y+I +D+L +R R++ RPRQVA Sbjct: 436 PVIDMDLARTALQDIIAEKH-KVITADLIIDAVAKYYHIRISDILGKKRTRSLARPRQVA 494 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M LSK +T S P IG FG RDHTTV+HA+R V + E D L ++ E L LI Sbjct: 495 MTLSKELTTMSLPAIGDAFGGRDHTTVMHAIRAVTSLREEDPELNQDYEKLLILIQ 550 >gi|195977157|ref|YP_002122401.1| chromosomal replication initiation protein [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|226735849|sp|B4U5G8|DNAA_STREM RecName: Full=Chromosomal replication initiator protein DnaA gi|195973862|gb|ACG61388.1| chromosomal replication initiator protein DnaA [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 450 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 138/478 (28%), Positives = 231/478 (48%), Gaps = 35/478 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ Y + + V +++ + +K + Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLIKVDNHVATI------FLDQMKELFW 54 Query: 91 E-TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 E + + + +I V V + + + Sbjct: 55 EKNLKDVILTAGFEVYNAQIAVDYVYEEDLIIE------------QQHQGQQGYTEQAFQ 102 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLGK Sbjct: 103 QLPAVQSDLNPKYSFDNFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLGK 157 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q Sbjct: 158 THLLNAIGNSVLLENPNARIKYITAENFINEFVVHIRLDTMDELKEKFRNLDLLLIDDIQ 217 Query: 270 FLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 SLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNITP 277 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PDFETRVAILTN-----KIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKQ 332 Query: 387 I--LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 I +T +IA E + G + IE+IQ V K Y ++ ++ + +R + +V RQ Sbjct: 333 IDTITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQDIVLARQ 392 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 VAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 VAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIGQDESLRIEIETIKNKIK 450 >gi|91781385|ref|YP_556591.1| chromosomal replication initiation protein [Burkholderia xenovorans LB400] gi|123359273|sp|Q147F0|DNAA_BURXL RecName: Full=Chromosomal replication initiator protein DnaA gi|91685339|gb|ABE28539.1| chromosomal replication initiator protein DnaA [Burkholderia xenovorans LB400] Length = 544 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 129/388 (33%), Positives = 210/388 (54%), Gaps = 17/388 (4%) Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 LPS++ ++ + P + S +T S S L+ F F+ G +N++ Sbjct: 171 LPSLDANEAAAARRTWRPGQSAGSNG----NGETDSMYERSKLNPVLTFDNFVTGKANQL 226 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ AE Sbjct: 227 ARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLMDKAGARIRYIHAE 281 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV Sbjct: 282 QYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQV 341 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +D P E+ +D R+ SR G++V + + EMR +IL + + + +++NE Sbjct: 342 IITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEFVSLNE 396 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 +V VA+ + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+ Sbjct: 397 DVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVTKEALKDLL-TVQNRQISVEN 455 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQ+ A Y+I D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVL Sbjct: 456 IQKTTADFYSIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVL 515 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HAVRK+ D L E+ +L++ + Sbjct: 516 HAVRKIADERSKDAQLNHELHVLEQTLK 543 Score = 71.2 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 + ++ V+ ++ A Sbjct: 62 ADMARDFWHTPIDVQFVLDPKA 83 >gi|271961610|ref|YP_003335806.1| DNA replication initiation ATPase-like protein [Streptosporangium roseum DSM 43021] gi|270504785|gb|ACZ83063.1| ATPase involved in DNA replication initiation- like protein [Streptosporangium roseum DSM 43021] Length = 582 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 124/388 (31%), Positives = 199/388 (51%), Gaps = 19/388 (4%) Query: 124 SSPSITKLSPINTNISKSPIILGKQTISPVFGSP-------LDSRFVFSTFIEGSSNRVA 176 SP ++SP G GS L+ ++ F TF+ GSSNR Sbjct: 200 PSPPSRSEPDTFERPAQSPGAGGVHNRWDSRGSRTQGEPARLNPKYTFETFVIGSSNRF- 258 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A V NPLFI+ GLGKTHLL AI + + RV Y+++E Sbjct: 259 ----AHAAAVAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYAQSLYDGARVRYVSSEE 314 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVV 295 F F ++IRD+ A + R +D+LL+DD+QFL+GK Q EF H N+L ++ KQ+V Sbjct: 315 FTNDFINSIRDHKADGFRSRYRAVDILLVDDIQFLEGKEQTQEEFFHTFNTLHNANKQIV 374 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 ++DR P +L +L+ R+R+R + G+ + + E R +IL+ + L E Sbjct: 375 ISSDRAPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAIQEGLAAPPE 429 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDI 414 VL ++A ++T+ REL+GA ++ S + ++ + +L L+ ++ + I Sbjct: 430 VLEYIASRISTNIRELEGALIRVTAFASLNRQSVDLQLTEVVLKDLITEDAGSEITVATI 489 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 A ++ +S +DL R R +V RQ+AMYL + +T S P+IG++FG RDHTTV+H Sbjct: 490 MASTAAYFGLSIDDLCGGSRSRVLVTARQIAMYLCRELTDMSLPKIGQQFGGRDHTTVMH 549 Query: 475 AVRKVEKMLETDITLKKEVELLKRLISE 502 A RK+ ++ ++ +V L I + Sbjct: 550 ADRKIRSLMAERRSIYNQVNELTTRIKQ 577 Score = 66.6 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 3/126 (2%) Query: 33 VNCESIFTIVSSR-LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ +++ L V W + ++++ V L+ P +F + ++++ Sbjct: 4 MDLGAVWARALENSLNESVPSQQ-RVWLSMTRPFGLMNDTVVLAAPNDFARDVLEDKLRP 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP-SITKLSPINTNISKSPIILGKQTI 150 I+ +E R V ++V A S AS P S + P + S P Q + Sbjct: 63 LISHALSQEFGRPMRVAVMVDPSATGSDSGVASRPESYPQAPPTSYPQSGGPQQSYAQPV 122 Query: 151 SPVFGS 156 + S Sbjct: 123 TSQHHS 128 >gi|296157625|ref|ZP_06840460.1| chromosomal replication initiator protein DnaA [Burkholderia sp. Ch1-1] gi|295892397|gb|EFG72180.1| chromosomal replication initiator protein DnaA [Burkholderia sp. Ch1-1] Length = 537 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 129/388 (33%), Positives = 210/388 (54%), Gaps = 17/388 (4%) Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 LPS++ ++ + P + S +T S S L+ F F+ G +N++ Sbjct: 164 LPSLDANEAAAARRTWRPGQSAGSSG----NGETDSMYERSKLNPVLTFDNFVTGKANQL 219 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A AA +A+ Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ AE Sbjct: 220 ARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLMDKAGARIRYIHAE 274 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQV 294 ++ A + + K ++DLLLIDD+QF GK Q EF + +L+ + QV Sbjct: 275 QYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQV 334 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 + +D P E+ +D R+ SR G++V + + EMR +IL + + + +++NE Sbjct: 335 IITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEFVSLNE 389 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIED 413 +V VA+ + ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+ Sbjct: 390 DVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEVTKEALKDLL-TVQNRQISVEN 448 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQ+ A Y+I D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVL Sbjct: 449 IQKTTADFYSIKVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVL 508 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HAVRK+ D L E+ +L++ + Sbjct: 509 HAVRKIADERSKDAQLNHELHVLEQTLK 536 Score = 71.2 bits (173), Expect = 4e-10, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + N + ++ P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDAAANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 + ++ V+ ++ A Sbjct: 62 ADMARDFWHAPVDVQFVLDPKA 83 >gi|302346167|ref|YP_003814465.1| chromosomal replication initiator protein DnaA [Prevotella melaninogenica ATCC 25845] gi|302150481|gb|ADK96742.1| chromosomal replication initiator protein DnaA [Prevotella melaninogenica ATCC 25845] Length = 468 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 118/472 (25%), Positives = 226/472 (47%), Gaps = 14/472 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + V+ ++++ +K V + +WF+ + S L VP+ F+ +++ Sbjct: 1 MNVSPKNLWDSCLQLIKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEGH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y++ + K+ + + V + + ++ +S + Sbjct: 61 YVDLLRKVLTRVFGQGVQLTYRVMVDQENHLSQDLEQDTVEDISSQRPTARANQSPTVLD 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T+ S LD FS ++EG SN++ + SIAE + T + NP+FI+ G G Sbjct: 121 TVPQDLDSQLDPHKSFSNYVEGDSNKLPRSIGLSIAEHPN----TTQFNPMFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + + P RV+Y++A F ++ ++R N + + + ID+L++DD+ Sbjct: 177 KTHLVNAIGLKAKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDILIVDDI 236 Query: 269 QFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L Sbjct: 237 QEWVTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + ++ IL +++ LNI E+V+ +A T S R+L G N L+ + Sbjct: 297 NVQLCVDILHSKIKRD-----GLNIPEDVVRFIAETANGSVRDLQGVINSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + I+DI V HYN++ + + S R + +V RQV+M Sbjct: 352 NIDMRLAERVIKRAVKID-DEPLTIDDILDKVCTHYNVTMSAVNSRSRKKDIVMARQVSM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Y+++ T IG+ G+RDH+TV+H+ K+E L+ D E+ ++ Sbjct: 411 YMAQKYTKMPASRIGKLVGNRDHSTVIHSCSKIEDRLKVDKGFHAEIASIEN 462 >gi|268610504|ref|ZP_06144231.1| chromosomal replication initiation protein [Ruminococcus flavefaciens FD-1] Length = 457 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 135/472 (28%), Positives = 221/472 (46%), Gaps = 28/472 (5%) Query: 36 ESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 E +F V + + + P +W + L S + V T F K + Y E + Sbjct: 5 EEVFASVKKYILDNGKIPPIGLTTWIEPLVPVSFNGSDAVFRVETEFQKNIVLTNYNEIL 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F V I++ K P NI + K Sbjct: 65 KDAFFNVLG--LKVNIIIEG---------------EKTEPEKVNIPTDAELEMKHQELEQ 107 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + + F TFIEG SN AL ++S+A+ NPLFI+ G+GKTHL+ Sbjct: 108 SYKFANYDYTFDTFIEGRSNEFALACSKSVAKNCGE-KAVPDYNPLFIYGPSGMGKTHLI 166 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-NCALNLKDSLRNIDLLLIDDMQFLQ 272 AIAN K P+ +VY+T+E F +A+ + + RN D+LLIDD+QF Sbjct: 167 TAIANEVRKNHPDFNIVYVTSEAFGGELINALNNTGNIDDFHAKYRNADILLIDDIQFFS 226 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK +Q EF H +L +Q+V +D+PP EL +L+ R+R+R +GG+ + DYE Sbjct: 227 GKERMQEEFFHTFYTLHQEGRQIVITSDKPPKELLTLEERLRTRFEGGLIADISAPDYET 286 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +I+ + E +L + EV +A + ++ R+L+GA +L + F +T Sbjct: 287 RLAIINR-----KSELLELKMPSEVAEFMANRLKSNIRQLEGAVVRLKALNHFAGSPITI 341 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A ++ ++ + + +E I V+ Y +S DL SN+R + R+VA+Y+ + Sbjct: 342 SMAQSVIRDVLTDEQPIPITVEKIISEVSTVYGVSPEDLRSNKRSAQISIARKVAIYVVR 401 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T IG FG RDH+T++++V V + +E D LK V+ + + I + Sbjct: 402 EITQMPLASIGTEFGGRDHSTIVYSVTSVSEAMEKDPNLKNLVQDIIKNIKD 453 >gi|86156431|ref|YP_463216.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-C] gi|85772942|gb|ABC79779.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-C] Length = 457 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 132/475 (27%), Positives = 228/475 (48%), Gaps = 27/475 (5%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +E + +++ + L+ + D+Y WF+ L+ S+ + + P F + ++++ Sbjct: 6 SALVETPLDDLWSRIDGFLRARCREDLYERWFEPLRPVSLGEGRLQIGAPDKFHRDFVED 65 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 Y + E + V P + P+ ++ Sbjct: 66 NYRGWFEEFIPELTGERLRIAFAVDDAPRPIGAPASPPPAAVAARAAEPHLEPR------ 119 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 S + R+ F TF+ G+SN A AAQ++A NPLF+H GL Sbjct: 120 -------DSRPNPRYAFDTFVVGASNHFAFAAAQAVAANPGR-----TWNPLFLHGDSGL 167 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+A+A +++ RV +++E + F +A+ + R LL+DD Sbjct: 168 GKTHLLHAVAHAILEKSGG-RVAIVSSERYTNDFVAALSRGTMDEFRRKYRECSALLVDD 226 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFL GK EF H N L D Q+V ++DR P EL+ LD R+ SR + G+ V + + Sbjct: 227 VQFLAGKDKTAEEFFHTFNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEV 286 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 ++E R +IL+ + + K+++ ++V +A+ + ++ REL+GA +L S Sbjct: 287 PEFETRAAILQK-----KADVEKIDLPDDVTQLLAQHIRSNVRELEGALMRLAAFASLKS 341 Query: 387 I-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +A ++LS ++ + IE IQ VA HY ++ L S R + + PRQVA Sbjct: 342 EPITVPLARDVLSDVIPPPGYRP-PIEKIQEAVAGHYGLTVAKLTSASREQKIAFPRQVA 400 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + + F I +F +DHTTV+ AV +V+ +LE+D ++ V L + Sbjct: 401 MYLCRELAKEKFQSIAEKFNKKDHTTVIAAVDRVKGLLESDDAVRTAVAQLSAKL 455 >gi|288802026|ref|ZP_06407467.1| DNA replication initiator protein, ATPase [Prevotella melaninogenica D18] gi|288335461|gb|EFC73895.1| DNA replication initiator protein, ATPase [Prevotella melaninogenica D18] Length = 468 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 118/472 (25%), Positives = 226/472 (47%), Gaps = 14/472 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + V+ ++++ +K V + +WF+ + S L VP+ F+ +++ Sbjct: 1 MNVSPKNLWDSCLQLIKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEGH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y++ + K+ + + V + + ++ +S + Sbjct: 61 YVDLLRKVLTRVFGQGVQLTYRVMIDQENHLSQDLEQDTVEDISSQRPTARANQSPTVLD 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T+ S LD FS ++EG SN++ + SIAE + T + NP+FI+ G G Sbjct: 121 TVPQDLDSQLDPHKSFSNYVEGDSNKLPRSIGLSIAEHPN----TTQFNPMFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + + P RV+Y++A F ++ ++R N + + + ID+L++DD+ Sbjct: 177 KTHLVNAIGLRAKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDILIVDDI 236 Query: 269 QFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L Sbjct: 237 QEWVTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + ++ IL +++ LNI E+V+ +A T S R+L G N L+ + Sbjct: 297 NVQLCVDILHSKIKRD-----GLNIPEDVVRFIAETANGSVRDLQGVINSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + I+DI V HYN++ + + S R + +V RQV+M Sbjct: 352 NIDMRLAERVIKRAVKID-DEPLTIDDILDKVCSHYNVTMSAVNSRSRKKDIVMARQVSM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Y+++ T IG+ G+RDH+TV+H+ K+E L+ D E+ ++ Sbjct: 411 YMAQKYTKMPASRIGKLVGNRDHSTVIHSCSKIEDRLKVDKGFHAEIASIEN 462 >gi|197120422|ref|YP_002132373.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. K] gi|196170271|gb|ACG71244.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter sp. K] Length = 458 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 133/475 (28%), Positives = 230/475 (48%), Gaps = 26/475 (5%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +E + +++ + L+ + D+Y WF+ L+ S+ + + P F + ++++ Sbjct: 6 SALVETPLDDLWSRIDGFLRARCREDLYERWFEPLRPVSLDEGRLQIGAPDKFHRDFVED 65 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 Y + E + V P A +P+ + Sbjct: 66 NYRGWFEEFIPELTGERLRIAFAVDDAPRPIGAAAAPAPAAVSA-----------ARAPE 114 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + P P + R+ F TF+ G+SN A AAQ++A NPLF+H GL Sbjct: 115 PHLDPRDSRP-NPRYAFDTFVVGASNHFAFAAAQAVAANPGR-----TWNPLFLHGDSGL 168 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+A+A +++ RV +++E + F +A+ + R LL+DD Sbjct: 169 GKTHLLHAVAHAILEKSGG-RVAIVSSERYTNDFVAALSKGTMDEFRRKYRECSALLVDD 227 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFL GK EF H N L D Q+V ++DR P EL+ LD R+ SR + G+ V + + Sbjct: 228 VQFLAGKDKTAEEFFHTFNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEV 287 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 ++E R +IL+ + + K+++ ++V +A+ + ++ REL+GA +L S Sbjct: 288 PEFETRAAILQK-----KADVEKIDLPDDVTQLLAQHIRSNVRELEGALMRLAAFASLKS 342 Query: 387 I-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +A ++L+ ++ + IE IQ VA HY ++ L S R + + PRQVA Sbjct: 343 EPITVPLARDVLADVIPPPGYRP-PIEKIQEAVAGHYGLTVAKLTSASREQKIAFPRQVA 401 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + + F I +F +DHTTV+ AV +V+ +LE+D ++ V L + Sbjct: 402 MYLCRELAKEKFQSIAEKFNKKDHTTVIAAVDRVKGLLESDDAVRTAVAQLSAKL 456 >gi|167568254|ref|ZP_02361128.1| chromosomal replication initiation protein [Burkholderia oklahomensis C6786] Length = 390 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 203/377 (53%), Gaps = 13/377 (3%) Query: 127 SITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 + + + +T S S L+ F F+ G +N++A AA +A+ Sbjct: 24 TAHEAAAGRRTWRPGAANANGETDSMYERSKLNPVLTFDNFVTGKANQLARAAAIQVADN 83 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ AE ++ A + Sbjct: 84 PGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIHAEQYVSDVVKAYQ 138 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ Sbjct: 139 RKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEI 198 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 +D R+ SR G++V + + EMR +IL + + + ++++E+V VA+ + Sbjct: 199 SGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVAKHLR 253 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA YNI Sbjct: 254 SNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVADFYNI 312 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 313 KVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERG 372 Query: 485 TDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 373 KDAQLNHELHVLEQTLK 389 >gi|78064659|ref|YP_367428.1| chromosomal replication initiation protein [Burkholderia sp. 383] gi|123729088|sp|Q39L82|DNAA_BURS3 RecName: Full=Chromosomal replication initiator protein DnaA gi|77965404|gb|ABB06784.1| chromosomal replication initiator protein, DnaA [Burkholderia sp. 383] Length = 525 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 123/349 (35%), Positives = 197/349 (56%), Gaps = 13/349 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKTHL+ Sbjct: 187 RSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIH 241 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 242 AIGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGK 301 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR Sbjct: 302 SRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRV 361 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + + +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 362 AIL-----MRKAQSEGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIEL 416 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K + Sbjct: 417 TKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKEL 475 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 476 TQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 524 Score = 73.2 bits (178), Expect = 9e-11, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 2/82 (2%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETI 93 + S+ L+ ++ P Y +W + L + + LS P F W+K+++ I Sbjct: 2 NDFWQHCSALLERELTPQQYVTWIKPLAPVAFDASANTLSIAAPNRFKLDWVKSQFSGRI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVA 115 T L +E + V+ ++ A Sbjct: 62 TDLAREFWNTPIEVQFVLDPKA 83 >gi|332296670|ref|YP_004438592.1| Chromosomal replication initiator protein dnaA [Treponema brennaborense DSM 12168] gi|332179773|gb|AEE15461.1| Chromosomal replication initiator protein dnaA [Treponema brennaborense DSM 12168] Length = 513 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 141/518 (27%), Positives = 236/518 (45%), Gaps = 59/518 (11%) Query: 32 EVNCESIFTIVSSRLKNQV----GPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 E+N + +++ + WF + + + SVP+ F + + + Sbjct: 3 ELNYAPFWEESLKQIEETFIQNGKEAEFRIWF-NITYAESQDMKIVASVPSLFFRDQMIS 61 Query: 88 R-YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 R Y I +E + +E ++ + + +T + + P S Sbjct: 62 RGYAALIQNKLEELSGQAIQLEFIIIPKNMQTAAQTGGGHPASSVHPAAPVHPDSAAHTP 121 Query: 147 KQTISPVFGSP----------------------------------------LDSRFVFST 166 + P L+ + F Sbjct: 122 SSGRPAAYRLPADAPADTVSDTVKPFGQYGERSASRPLGEPLHEQTRRHPQLNPNYTFDN 181 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G N AA ++++ Y NPL I+ VGLGKTHL++AI N K Sbjct: 182 FVTGDDNSFVYNAALAVSKNPGRTY-----NPLLIYGGVGLGKTHLMEAIGNEVYKSSGG 236 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLN 285 +VY+TAE F F +I K RN D+LLIDD+ F Q K Q E H N Sbjct: 237 -NIVYITAENFTNEFIQSINTKTQSKFKSKYRNADILLIDDIHFFQDKDGTQEELFHTFN 295 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L ++ KQ+V DRP SEL+++ R+RSR + G+SV + + YE+R +IL+ +L K Sbjct: 296 ALYENFKQLVFTCDRPVSELKNMTDRLRSRFERGLSVDIHMPKYEIRRAILERKLQSMGK 355 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR-HSFAPILTAEIADELLSHLVNTG 404 + P EV+ +A+ V T+ R+L+ + ++V LT ++A + L + Sbjct: 356 KVPG-----EVIDLIAQNVQTNVRDLEASLTKMVAYIELTGKDLTIDVARKELRDTFFSP 410 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 + + +E+IQR+VA ++ IS +D+ +R + V+ PR +A+Y+++ +T S E+G F Sbjct: 411 KASNITVENIQRVVADYFGISYSDIKGKKRTKNVMLPRHLALYIARELTEYSTTELGMEF 470 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G RDHTTV+HA +K+E L +D TL+ V+ L R I + Sbjct: 471 GGRDHTTVMHACQKIEDQLRSDSTLESTVQTLVRSIKD 508 >gi|315606265|ref|ZP_07881281.1| DNA-directed DNA replication initiator protein [Prevotella buccae ATCC 33574] gi|315251956|gb|EFU31929.1| DNA-directed DNA replication initiator protein [Prevotella buccae ATCC 33574] Length = 469 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 122/474 (25%), Positives = 230/474 (48%), Gaps = 19/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 ++V+ +++ + + V + +WF+ + F S L VP+ F+ +++ Sbjct: 1 MKVSPNALWDKSLALIGENVTKQQFVTWFKPIVFESFNEESKTLLVQVPSPFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPS---VEKTASSPSITKLSPINTNISKSPIIL 145 Y++ ++++ + + GV + R V + + P+ L P + Sbjct: 61 YVDLLSRVLRRTYG--TGVRLSYRVVTDKEHNLSQDIEAEPTDLALRPQAKTQANKSPTA 118 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 L+ F+ +IEG SN++ + SIAE + T + NP+FI+ Sbjct: 119 LDAAQPQALDPQLNPHLTFNNYIEGDSNKLPRSIGLSIAEHPN----TTQFNPMFIYGPS 174 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GKTHL+ AI + + P RV+Y++A F ++ SA+ N + + IDLL++ Sbjct: 175 GCGKTHLVNAIGLHAKQLYPQKRVLYVSARLFQVQYTSAVLQNTLNDFIKFYQTIDLLIV 234 Query: 266 DDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q Q F H+ N L + K+++ A+DRPP +L+ + R+ +R G+ L Sbjct: 235 DDIQEWMTATKTQETFFHIFNHLFKNGKRIILASDRPPVDLKGMPDRLLTRFSCGLIAEL 294 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-S 383 + ++ IL++++ L I + V+ ++A + S R L+G N L+ + Sbjct: 295 EKPNVQLCIDILQSKIRRD-----GLKIPDNVVQYIAENASGSVRGLEGVINGLLAYSIT 349 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + ++A+ + VN E K + ++DI V H+N++ + S R R +V RQ Sbjct: 350 YNCDINLKLAERCIKRAVNI-EDKPITVDDIIEKVCNHFNVTATAVNSKCRKRDLVVARQ 408 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V+MYL++ T IG+ G+RDH+TV+H+ +VE+ L+ D EV ++ Sbjct: 409 VSMYLAQKYTKMPASRIGKLVGNRDHSTVIHSCTQVERRLKADHAFYDEVTSIE 462 >gi|163814987|ref|ZP_02206374.1| hypothetical protein COPEUT_01140 [Coprococcus eutactus ATCC 27759] gi|158449670|gb|EDP26665.1| hypothetical protein COPEUT_01140 [Coprococcus eutactus ATCC 27759] Length = 454 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 131/467 (28%), Positives = 241/467 (51%), Gaps = 28/467 (5%) Query: 39 FTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + + + L+N+ + + +W + L +SV N V+ + + +Y + + Sbjct: 9 WNDILNILENEHGISHIMIHTWIEPLNVYSVEDNKVYFT---------LDEKYGQRGIEF 59 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 +++ I +L S++ + S+ K + + + S Sbjct: 60 LKKKLFDIYLETVLRELFQNDSIQVIFTLQSVMKE-------EEKQPTYTEDYNEAISKS 112 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L + F FI G SN+ A ++A+ + NPLF++ GLGKTHL+Q+I Sbjct: 113 NLRPDYTFENFIVGESNKHAHATCLAVADSPGQD----KFNPLFLYGESGLGKTHLMQSI 168 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-L 275 A+ ++ N++V+Y+++ F AI ++ R +D+LLIDD+Q+L GK Sbjct: 169 AHYILQHNSNMKVLYVSSNQFTNEIIEAIAKKTTEEFRNKYRKVDVLLIDDIQYLIGKDA 228 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q+EF N+L D KQ++ ++D+PP E+++LD R RSR + GV + + DYE R +I Sbjct: 229 TQNEFFDTFNALHDEGKQIILSSDKPPKEIKTLDVRYRSRFEWGVPIDIHAPDYETRMAI 288 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIAD 394 LKN+ I + NI+E + ++A+ +T + REL+GA N+L I +T ++A Sbjct: 289 LKNKAEIKGLK----NISEPIFEYIAKNITYNVRELEGALNKLSIYSELGHIKITEDLAK 344 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 +L L++ E + + I V++H NIS ND++S +R + + RQ++MYL + T Sbjct: 345 NILKDLISKDEKVTITPDLIINTVSEHLNISVNDIISTKRSQDIATARQISMYLCRKYTD 404 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + IG FG +DH+TV ++KVE+ ++ D + V+++ + ++ Sbjct: 405 KGLKSIGDSFGGKDHSTVHSNIQKVEEKIDKDPEFAEMVDVIIKKLN 451 >gi|167560990|ref|ZP_02353906.1| chromosomal replication initiation protein [Burkholderia oklahomensis EO147] Length = 387 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 203/377 (53%), Gaps = 13/377 (3%) Query: 127 SITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 + + + +T S S L+ F F+ G +N++A AA +A+ Sbjct: 21 TAHEAAAGRRTWRPGAANANGETDSMYERSKLNPVLTFDNFVTGKANQLARAAAIQVADN 80 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 Y NPLF++ VGLGKTHL+ AI N + + R+ Y+ AE ++ A + Sbjct: 81 PGISY-----NPLFLYGGVGLGKTHLIHAIGNQLLLDKAGARIRYIHAEQYVSDVVKAYQ 135 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 + K ++DLLLIDD+QF GK Q EF + +L+ + QV+ +D P E+ Sbjct: 136 RKAFDDFKRYYHSLDLLLIDDIQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEI 195 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 +D R+ SR G++V + + EMR +IL + + + ++++E+V VA+ + Sbjct: 196 SGIDDRLISRFDSGLTVAIEPPELEMRVAIL-----MRKAQSEGVSLSEDVAFFVAKHLR 250 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 ++ REL+GA +++ F +T E+ E L L+ T + +++ +E+IQ+ VA YNI Sbjct: 251 SNVRELEGALRKILAYSKFHGREITIELTKEALKDLL-TVQNRQISVENIQKTVADFYNI 309 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 D+ S +R + RPRQ+AMYL+K +T +S PEIG FG RDHTTVLHAVRK+ Sbjct: 310 KVADMYSKKRPANIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERG 369 Query: 485 TDITLKKEVELLKRLIS 501 D L E+ +L++ + Sbjct: 370 KDAQLNHELHVLEQTLK 386 >gi|251781469|ref|YP_002995770.1| chromosomal replication initiation protein [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390097|dbj|BAH80556.1| chromosomal replication initiator protein dnaA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323126260|gb|ADX23557.1| chromosomal replication initiation protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 451 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 142/479 (29%), Positives = 246/479 (51%), Gaps = 36/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ Y + + V +++ + YL Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLLKVENHVATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF E++ + ++++ + + A + I+ N + +Q I Sbjct: 47 DQMKELFWEKNLK----DVILTAGFEVYNAQIAVDYVFEEDLIIDQNQIPNSQSYNQQVI 102 Query: 151 SPV--FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P+ S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLG Sbjct: 103 TPLPAVTSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+ Sbjct: 158 KTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217 Query: 269 QFLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 Q L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 QSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNIT 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PPDFETRVAILTN-----KIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFK 332 Query: 386 PI--LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I +T ++A E + G + IE+IQ V K Y+++ ++ + +R + +V R Sbjct: 333 QIDTITVDVAAEAIRARKQDGPKMTVIPIEEIQTQVGKFYDVTVKEIKATKRTQDIVLAR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 QVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKIK 451 >gi|221229344|ref|YP_002502760.1| chromosomal replication initiation protein [Mycobacterium leprae Br4923] gi|219932451|emb|CAR70094.1| putative chromosomal replication initiator protein [Mycobacterium leprae Br4923] Length = 521 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 133/500 (26%), Positives = 242/500 (48%), Gaps = 46/500 (9%) Query: 37 SIFTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 +++ V S L + + P +W ++ +++ LSVP++F Sbjct: 30 TVWNAVVSELNGESNTDDEATNDSTLVTPLTPQQ-RAWLNLVQPLTIIEGFALLSVPSSF 88 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 ++ I+ IT + + + + + ++ +SS + T+ + Sbjct: 89 VQNEIERHLRTPITDALSRRLGQQIQLGVRIAPPSTDHIDDNSSSADVLLTDDCGTDTDE 148 Query: 141 ---SPIILGKQTISPVF-------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 P+ Q + F G+ L+ R+ F TF+ G+SNR A Sbjct: 149 NYGEPLTGEYQGLPTYFTERPHHTESTVTGGTSLNRRYTFETFVIGASNRF-----AHAA 203 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI GLGKTHLL A N + + P +RV Y++ E F F ++ Sbjct: 204 ALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFTNDFINS 263 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP Sbjct: 264 LRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVISSDRPPK 323 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L +L+ R+R+R + G+ + + E R +IL+ + + +L + +VL +A + Sbjct: 324 QLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPGDVLELIASS 378 Query: 364 VTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + + REL+GA ++ S + +A+ +L L+ T ++ I A+++ Sbjct: 379 IERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMTATAEYF 438 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 + + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A RK+ Sbjct: 439 DTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQRKILSE 497 Query: 483 LETDITLKKEVELLKRLISE 502 + + V+ L I + Sbjct: 498 MAERREVFDHVKELTTRIRQ 517 >gi|307711216|ref|ZP_07647638.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK321] gi|307617178|gb|EFN96356.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK321] Length = 453 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 140/474 (29%), Positives = 239/474 (50%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + ++ ++ S + +P +T SP K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYI---FIKPQYTTVSQVEEAPNSTLYDYSP----KLASIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N L + KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNVLHSNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E + + L ++A ++ REL+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVNQMLVIPIDKIQNEVGNFYGVSVKEMKGSRRLQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKIK 453 >gi|228476806|ref|ZP_04061454.1| chromosomal replication initiator protein DnaA [Streptococcus salivarius SK126] gi|228251543|gb|EEK10680.1| chromosomal replication initiator protein DnaA [Streptococcus salivarius SK126] Length = 454 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 139/470 (29%), Positives = 229/470 (48%), Gaps = 29/470 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + K ++ + + K V +N+ + + K + + I Sbjct: 8 FWNKLLELAKEELTQATFDYYVLDTKLIKVQNNVATILLE-EVKKLFWEKNMQSFILMAG 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 E ++ VE + L T ++ T P S Sbjct: 67 FEAYNSEIKVEYVFDEALLNEANSTVTNNDFGNKKEQQTPA------------LPTLDSD 114 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+S++ F FI+G NR ++ A+ ++A+ Y NPLFI+ GLGKTHLL AI Sbjct: 115 LNSKYTFDNFIQGDENRWSVAASLAVADSPGATY-----NPLFIYGGPGLGKTHLLNAIG 169 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQ 277 N + P R+ Y+TAE F+ F IR + LK R++D+LLIDD+Q L K Q Sbjct: 170 NKVLHDNPQARIKYITAENFINEFVVHIRLDKMDELKLKYRHLDVLLIDDIQSLAKKSTQ 229 Query: 278 ---HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF + N L ++ KQ+V +DR P +L ++ R+ +R + G++V + D+E R + Sbjct: 230 ATQEEFFNTFNVLHNNNKQIVLTSDRNPDQLNEMEERLVTRFKWGLTVNITPPDFETRVA 289 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPILTAEI 392 IL N + D + E + ++A ++ R+L+GA LV +T E+ Sbjct: 290 ILTN-----KIMDYDYHFPPETIEYLAGQFDSNVRDLEGALKDISLVANVRQLDTITVEV 344 Query: 393 ADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E + ++ + + IEDIQ V K YN++ ++ + +R + +V RQVAMYL++ Sbjct: 345 AAEAIRARKMDGPKLTLIPIEDIQTEVGKFYNVTVKEIKATKRTQNIVLARQVAMYLARE 404 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E++ +K I Sbjct: 405 MTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIAQDDSLRIEIDTIKNKIK 454 >gi|322412915|gb|EFY03822.1| chromosomal replication initiation protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 451 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 141/479 (29%), Positives = 246/479 (51%), Gaps = 36/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ Y + + V +++ + YL Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLLKVENHVATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF E++ + ++++ + + A + + N + + +Q I Sbjct: 47 DQMKELFWEKNLK----DVILTAGFEVYNAQIAVDYVFEEDLINDQNQTPNSQGYNQQVI 102 Query: 151 SPV--FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P+ S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLG Sbjct: 103 TPLPAVTSDLNPKYRFENFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+ Sbjct: 158 KTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217 Query: 269 QFLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 Q L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 QSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNIT 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PPDFETRVAILTN-----KIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFK 332 Query: 386 PI--LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I +T +IA E + G + I++IQ V K Y+++ ++ + +R + +V R Sbjct: 333 QIDTITVDIAAEAIRARKQDGPKMTVIPIDEIQTQVGKFYDVTVKEIKATKRTQDIVLAR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 QVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKIK 451 >gi|307710359|ref|ZP_07646800.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK564] gi|307618951|gb|EFN98086.1| chromosomal replication initiator protein DnaA [Streptococcus mitis SK564] Length = 453 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 138/474 (29%), Positives = 233/474 (49%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + + T S S + K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFTKPQDTTISQVEEATNSTLYD-------YSPKLASIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E N + L ++A ++ R+L+G+ N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGSINDITLIARVKNIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVSQMLVIPIDKIQNEVGNFYGVSVKEMKGSRRLQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ + L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDENDNLRLEIESIKKKIK 453 >gi|224536057|ref|ZP_03676596.1| hypothetical protein BACCELL_00921 [Bacteroides cellulosilyticus DSM 14838] gi|224522316|gb|EEF91421.1| hypothetical protein BACCELL_00921 [Bacteroides cellulosilyticus DSM 14838] Length = 462 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 120/473 (25%), Positives = 238/473 (50%), Gaps = 17/473 (3%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+N ++ +++ V Y +WF + + + VP+ F ++++++++ Sbjct: 3 ELNHVGLWNRCLEIIRDNVPEQTYKTWFLPIIPLKYEDKTLVVQVPSQFFYEFLEDKFVD 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + K + G ++L + S T + S + + I Q Sbjct: 63 LLRKTLYKVIGD--GTKLLYNVMVDKSSRTTVNLESTPRTIIPQKKVIGREI---PQAPI 117 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ + F TFIEG SN+++ + A+++A+ + NPLF + + G+GKTH Sbjct: 118 ADLDPHLNPEYNFETFIEGYSNKLSRSVAEAVAQNPAK----TIFNPLFFYGASGVGKTH 173 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L AI + P+ RV+Y++A F ++ ++R+N + + ++ID+L+IDD+Q Sbjct: 174 LANAIGTKIKELYPDKRVLYVSAHLFQVQYTDSVRNNTTNDFINFYQSIDILIIDDIQEF 233 Query: 272 QG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 G Q+ F H+ N L + KQ++ +DR P L+ ++ R+ +R + G+ L E Sbjct: 234 AGVTKTQNTFFHIFNHLHQNGKQLILTSDRAPVLLQGMEERLITRFKWGMVAELERPTVE 293 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 +R +IL+N + L EV+ ++A V S R+L+G ++ + + + Sbjct: 294 LRKNILRN-----KIHRDGLQFPPEVIDYIAENVGDSVRDLEGIVISIMAHSTIYNKEID 348 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+ ++ +V + E+K + ++DI +V KH+++ + + R R VV+ RQ+AM+L+ Sbjct: 349 LELTQRIVRKVVKS-ESKSITVDDIINVVCKHFSLDTATIHTKSRKREVVQARQIAMFLA 407 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 K T S +IG G +DH TVLHA + ++++ E D T + E++ ++ + + Sbjct: 408 KSYTDFSTAKIGALIGHKDHATVLHACKTIKELREVDKTFRAEIDDIQASLKK 460 >gi|297558986|ref|YP_003677960.1| chromosomal replication initiator protein DnaA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843434|gb|ADH65454.1| chromosomal replication initiator protein DnaA [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 652 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 128/375 (34%), Positives = 201/375 (53%), Gaps = 15/375 (4%) Query: 132 SPINTNISKSPIILG--KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 +P+ K+P Q + P + L+ ++ F TF+ GSSNR A V + Sbjct: 284 APVEDEAPKAPSSPPGRSQEVPPGEHARLNPKYTFDTFVIGSSNRF-----AHAASVAAA 338 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 NPLFIH GLGKTHLL AI + + + RV Y+++E F F ++IRD Sbjct: 339 EAPAKAYNPLFIHGGSGLGKTHLLHAIGHYTHRLYEGSRVRYVSSEEFTNEFINSIRDGK 398 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 A + R+ID+LL+DD+QFL+ K Q EF H N+L +S KQ+V ++DRPP +L +L Sbjct: 399 ADGFRRRYRDIDVLLVDDIQFLENKEQTQEEFFHTFNTLHNSDKQIVISSDRPPKQLTTL 458 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 + R+RSR + G+ + + E R +IL+ + L EVL +A ++T+ Sbjct: 459 EDRMRSRFEWGLLTDVQPPELETRIAILRK-----KAAQEGLAAPPEVLEFIASKISTNI 513 Query: 369 RELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL+GA ++ S + ++ ++L LV + E ++ I A ++ ++ Sbjct: 514 RELEGALIRVTAFASLNRQSVDLDLTSQVLRDLVPSTEVPEVTAGAIMSQTAAYFGLTVE 573 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 DL R R +V RQ+AMYL + +T S P+IG++FG RDHTTV+HA RKV ++ Sbjct: 574 DLCGTSRSRVLVTARQIAMYLCRELTELSLPKIGQQFG-RDHTTVMHAERKVRGLMAERR 632 Query: 488 TLKKEVELLKRLISE 502 ++ +V L I + Sbjct: 633 SIYNQVHELTSRIKD 647 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 32/81 (39%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 +VN +++ V + N P +W + + ++ + ++ P F K ++ R Sbjct: 5 QVNLAVVWSSVLDGIDNDSLPAHQRAWLPQTRPLGLIEDTALIAAPNEFTKKVLETRLYP 64 Query: 92 TITKLFQEEHSRIQGVEILVR 112 I+K R V + V Sbjct: 65 AISKALSAHLGREIRVAVTVD 85 >gi|255323604|ref|ZP_05364734.1| chromosomal replication initiator protein DnaA [Campylobacter showae RM3277] gi|255299318|gb|EET78605.1| chromosomal replication initiator protein DnaA [Campylobacter showae RM3277] Length = 436 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 117/465 (25%), Positives = 218/465 (46%), Gaps = 40/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNRYLETITKLF 97 V L ++ P + + ++LKF+ N + P + +I+ +Y I LF Sbjct: 4 NEVLELLSKEILPSEFECYIKQLKFNEKSSNSTNVVFNAPNEIIAKFIQTKYASKIAHLF 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + + + T P S Sbjct: 64 EVKTGQKPVINVQ-----------------------AATKTQSKPAKKVDVKEIKAQSSL 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ G SN+ A +A++++E Y NPLFI+ GLGKTHLLQ++ Sbjct: 101 LNPSYTFENFVVGDSNQFAFLSAKAVSEQLGKIY-----NPLFIYGPTGLGKTHLLQSVG 155 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + V+ +T+E F+ F + ++ ++ RN D+LLIDD+QFL I Sbjct: 156 NFCL--NGGKMVICVTSEQFITDFTYNLNNHSMERFREKYRNCDVLLIDDVQFLGKTDKI 213 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L Q+V +DR P L+ + R+R+R + G+ + + + + +I+ Sbjct: 214 QEEFFHTFNELHAKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIIADITPPELDTKIAII 273 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADE 395 K + + + ++++V+ ++A + + RE++ A L +T E A Sbjct: 274 KKKCEFDK-----IYLDKDVINYIATNMGDNIREIESAIINLNAYARLMRQEITLEFAKN 328 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L + + + +E+I +V+K N+ +++ S R + +V R++ +YL+K +TP Sbjct: 329 ILRDQIKEK-RENINLENIVEIVSKELNVKPSEMKSKSRSKNIVEARRIVIYLAKNLTPN 387 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+I + F +DH+ V H+++K+ +++ET+ K VE LK I Sbjct: 388 SMPQIAQFFNMKDHSAVSHSIKKINELIETNEYFKVRVEELKNKI 432 >gi|15902045|ref|NP_357595.1| chromosomal replication initiation protein [Streptococcus pneumoniae R6] gi|116516053|ref|YP_815417.1| chromosomal replication initiation protein [Streptococcus pneumoniae D39] gi|148984545|ref|ZP_01817833.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP3-BS71] gi|148988886|ref|ZP_01820301.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP6-BS73] gi|148997957|ref|ZP_01825470.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP11-BS70] gi|149013383|ref|ZP_01834092.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP19-BS75] gi|149020159|ref|ZP_01835133.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP23-BS72] gi|168484307|ref|ZP_02709259.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1873-00] gi|168491771|ref|ZP_02715914.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC0288-04] gi|168493999|ref|ZP_02718142.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC3059-06] gi|169832473|ref|YP_001693435.1| chromosomal replication initiation protein [Streptococcus pneumoniae Hungary19A-6] gi|182682971|ref|YP_001834718.1| chromosomal replication initiation protein [Streptococcus pneumoniae CGSP14] gi|221230949|ref|YP_002510101.1| chromosomal replication initiator protein [Streptococcus pneumoniae ATCC 700669] gi|225853612|ref|YP_002735124.1| chromosomal replication initiation protein [Streptococcus pneumoniae JJA] gi|237651054|ref|ZP_04525306.1| chromosomal replication initiation protein [Streptococcus pneumoniae CCRI 1974] gi|237821167|ref|ZP_04597012.1| chromosomal replication initiation protein [Streptococcus pneumoniae CCRI 1974M2] gi|298229492|ref|ZP_06963173.1| chromosomal replication initiation protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255938|ref|ZP_06979524.1| chromosomal replication initiation protein [Streptococcus pneumoniae str. Canada MDR_19A] gi|303254902|ref|ZP_07340987.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS455] gi|303259727|ref|ZP_07345703.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP-BS293] gi|303262194|ref|ZP_07348139.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS292] gi|303265390|ref|ZP_07351297.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS397] gi|303266062|ref|ZP_07351956.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS457] gi|303268470|ref|ZP_07354264.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS458] gi|307066637|ref|YP_003875603.1| DNA replication initiation ATPase [Streptococcus pneumoniae AP200] gi|38257595|sp|Q8DRQ4|DNAA_STRR6 RecName: Full=Chromosomal replication initiator protein DnaA gi|122279578|sp|Q04N63|DNAA_STRP2 RecName: Full=Chromosomal replication initiator protein DnaA gi|226735854|sp|B1I6X3|DNAA_STRPI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735855|sp|B2IQY9|DNAA_STRPS RecName: Full=Chromosomal replication initiator protein DnaA gi|254777916|sp|B8ZJH9|DNAA_STRPJ RecName: Full=Chromosomal replication initiator protein DnaA gi|254777918|sp|C1CH81|DNAA_STRZJ RecName: Full=Chromosomal replication initiator protein DnaA gi|15457529|gb|AAK98805.1| DNA biosynthesis, initiation, binding protein [Streptococcus pneumoniae R6] gi|116076629|gb|ABJ54349.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae D39] gi|147755967|gb|EDK63010.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP11-BS70] gi|147762906|gb|EDK69854.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP19-BS75] gi|147923322|gb|EDK74436.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP3-BS71] gi|147925697|gb|EDK76773.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP6-BS73] gi|147930837|gb|EDK81818.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP23-BS72] gi|168994975|gb|ACA35587.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae Hungary19A-6] gi|172042405|gb|EDT50451.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1873-00] gi|182628305|gb|ACB89253.1| chromosomal replication initiation protein [Streptococcus pneumoniae CGSP14] gi|183573942|gb|EDT94470.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC0288-04] gi|183576010|gb|EDT96538.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC3059-06] gi|220673409|emb|CAR67867.1| chromosomal replication initiator protein [Streptococcus pneumoniae ATCC 700669] gi|225723669|gb|ACO19522.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae JJA] gi|301799150|emb|CBW31662.1| chromosomal replication initiator protein [Streptococcus pneumoniae OXC141] gi|301800974|emb|CBW33635.1| chromosomal replication initiator protein [Streptococcus pneumoniae INV200] gi|302598173|gb|EFL65234.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS455] gi|302636834|gb|EFL67324.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP14-BS292] gi|302639279|gb|EFL69738.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP-BS293] gi|302641971|gb|EFL72324.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS458] gi|302644366|gb|EFL74619.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS457] gi|302645067|gb|EFL75307.1| chromosomal replication initiation protein [Streptococcus pneumoniae BS397] gi|306408174|gb|ADM83601.1| ATPase involved in DNA replication initiation [Streptococcus pneumoniae AP200] gi|332077808|gb|EGI88267.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA41301] gi|332198865|gb|EGJ12947.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA47368] Length = 453 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 139/474 (29%), Positives = 233/474 (49%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + + T+S + K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFTKPQDTTSSQVEEATNLTLYD-------YSPKLVSIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKIK 453 >gi|319746185|gb|EFV98455.1| DNA-directed DNA replication initiator protein [Streptococcus agalactiae ATCC 13813] Length = 469 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 144/480 (30%), Positives = 239/480 (49%), Gaps = 32/480 (6%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIK 86 + + N + + V ++Q+ P Y + + + H +++ +K + + Sbjct: 14 EEAMTENEQLFWNRVLELSRSQIAPAAYEFFVLEARLLKIEHQTAVITLDNIEMKKLFWE 73 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 I G EI + V + + ++ + + + Sbjct: 74 QNLGPVILTA---------GFEIFNAEITANYVSNDLHLQETSFSNYQQSSNEVNTLPIR 124 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K S L ++ F+ F++G NR A++A+ ++A+ Y NPLFI G Sbjct: 125 K------IDSNLKEKYTFANFVQGDENRWAVSASIAVADSPGTTY-----NPLFIWGGPG 173 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL AI N ++ PN RV+Y+TAE F+ F S IR + LK+ RN+DLLLID Sbjct: 174 LGKTHLLNAIGNQVLRDNPNARVLYITAENFINEFVSHIRLDSMEELKEKFRNLDLLLID 233 Query: 267 DMQFLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 D+Q L K Q EF + N+L + KQ+V +DR P++L L+ R+ +R G+ V Sbjct: 234 DIQSLAKKTLGGTQEEFFNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVN 293 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D+E R +IL N + ++ + ++ + ++A ++ REL+GA + Sbjct: 294 ITPPDFETRVAILTN-----KIQEYPYDFPQDTIEYLAGEFDSNVRELEGALKNISLVAD 348 Query: 384 F--APILTAEIADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 F A +T +IA E + N G + IE+IQ V K Y ++ ++ + +R + +V Sbjct: 349 FKHAKTITVDIAAEAIRARKNDGPIVTVIPIEEIQIQVGKFYGVTVKEIKATKRTQDIVL 408 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQVAMYL++ MT S P+IG+ FG RDH+TVLHA K++ M+ D L+ E+E +K I Sbjct: 409 ARQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMVAQDDNLRIEIETIKNKI 468 >gi|15899950|ref|NP_344554.1| chromosomal replication initiation protein [Streptococcus pneumoniae TIGR4] gi|148993607|ref|ZP_01823078.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP9-BS68] gi|149007716|ref|ZP_01831325.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP18-BS74] gi|168487221|ref|ZP_02711729.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1087-00] gi|168489313|ref|ZP_02713512.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP195] gi|168576111|ref|ZP_02722016.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae MLV-016] gi|194398133|ref|YP_002036722.1| chromosomal replication initiation protein [Streptococcus pneumoniae G54] gi|225857810|ref|YP_002739320.1| chromosomal replication initiation protein [Streptococcus pneumoniae 70585] gi|307126152|ref|YP_003878183.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae 670-6B] gi|18266737|sp|O08397|DNAA_STRPN RecName: Full=Chromosomal replication initiator protein DnaA gi|226735853|sp|B5E568|DNAA_STRP4 RecName: Full=Chromosomal replication initiator protein DnaA gi|254777915|sp|C1C982|DNAA_STRP7 RecName: Full=Chromosomal replication initiator protein DnaA gi|14971465|gb|AAK74194.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae TIGR4] gi|147760711|gb|EDK67683.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP18-BS74] gi|147927828|gb|EDK78850.1| chromosomal replication initiation protein [Streptococcus pneumoniae SP9-BS68] gi|183569905|gb|EDT90433.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae CDC1087-00] gi|183572228|gb|EDT92756.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae SP195] gi|183578101|gb|EDT98629.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae MLV-016] gi|194357800|gb|ACF56248.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae G54] gi|225721516|gb|ACO17370.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae 70585] gi|306483214|gb|ADM90083.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae 670-6B] gi|332071323|gb|EGI81818.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA17545] gi|332071685|gb|EGI82178.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA17570] gi|332199068|gb|EGJ13149.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA47901] Length = 453 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 141/475 (29%), Positives = 235/475 (49%), Gaps = 28/475 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSV-ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + I EI + P ++ T L+ N K Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFTKPQDTTSSQVEEATNLTLYN--------YSPKLVSI 108 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 P + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTH Sbjct: 109 PYSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTH 163 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 164 LLNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSL 223 Query: 272 QGKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+ Sbjct: 224 SGKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDF 283 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPI 387 E R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R Sbjct: 284 ETRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKD 338 Query: 388 LTAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAM Sbjct: 339 ITIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAM 398 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YLS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 399 YLSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKIK 453 >gi|86738725|ref|YP_479125.1| chromosomal replication initiator protein DnaA [Frankia sp. CcI3] gi|86565587|gb|ABD09396.1| chromosomal replication initiator protein DnaA [Frankia sp. CcI3] Length = 562 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 126/377 (33%), Positives = 194/377 (51%), Gaps = 13/377 (3%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 P T+ +P + P + L+ R++F TF+ G SNR A Sbjct: 190 PDATEGTPPVRVSAGLGRDAAPHETEPA-QARLNPRYIFETFVIGDSNRFPHAA-----A 243 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 V NPLFI+ GLGKTHLL AI + ++K PN+RV Y+++E F F ++I Sbjct: 244 VAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGHYALKLYPNMRVKYVSSEEFTNDFINSI 303 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 RD+ + R+ID+LL+DD+QFL+ K Q EF H N L D KQ+V ++DR P + Sbjct: 304 RDDRQQAFQRRYRDIDVLLVDDIQFLENKERTQEEFFHTFNVLHDGEKQIVISSDRSPKQ 363 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 L +L+ R+RSR + G+ + D E R +IL + A + L + +VL ++A + Sbjct: 364 LSALEDRLRSRFEWGLMTDITPPDLETRIAILSKKAATER-----LPVPPDVLEYIATHI 418 Query: 365 TTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 + REL+GA ++ S + +A+ +L L+ + I A ++ Sbjct: 419 ERNIRELEGALIRVAAFASLNKSHVDRTLAEIVLRDLIPDAGNPDITAAAIMNATAAYFG 478 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 +S DL R R +V RQ+AMYL + +T S P+IG+ FG RDHTTV+HA RK+ ++ Sbjct: 479 VSMEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQHFGGRDHTTVMHADRKIRGLM 538 Query: 484 ETDITLKKEVELLKRLI 500 + +V L I Sbjct: 539 AERRAIYNQVTELTNRI 555 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 51/135 (37%), Gaps = 10/135 (7%) Query: 27 DKRCLEVNCESIFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 D+ + + ++++ + + + + +W + + ++ + L+ P F K + Sbjct: 16 DEPSGDPDLAAVWSQAVAGVADGTLSAQQ-RAWLRLTRPLGLVQDTALLAAPNEFTKDLL 74 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 +R ++ + R V + V + P S I + P++ +P Sbjct: 75 DSRLRPFLSTALSTAYGREIRVAVTVEHLPDP----EPMSGPIRIVRPVDARGDTTP--- 127 Query: 146 GKQTISPVFGSPLDS 160 Q P GS L++ Sbjct: 128 -GQGSGPASGSALNA 141 >gi|325139557|gb|EGC62097.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis CU385] Length = 522 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 148/532 (27%), Positives = 244/532 (45%), Gaps = 72/532 (13%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 L + + + RL++ + P +A W L + + F +K+++ Sbjct: 2 SLSMTLAEFWPMCLRRLRDMLPPGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQF 60 Query: 90 LETITKLFQEE-----------HSRIQGVEILVRSVALPS-------------------- 118 I + +E ++ V S P+ Sbjct: 61 AGKIEAVREELAAGRSAFVFKPGEGVRYEMAAVESAVEPAEPSLHAGSEEMPVQEVLLDE 120 Query: 119 ------VEKTASSPSITKLSPINTNISKSPIILGKQTISPVF------------------ 154 V+ AS + L+ N+ P + P Sbjct: 121 LPSEEPVKPAASKTAADILAERMKNLPHEPRHTAEPASRPESAVLAKARTDAQRDAEEAR 180 Query: 155 --GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL Sbjct: 181 YEQTNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHL 235 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QA+ N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++ Sbjct: 236 VQAVGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIK 295 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK EF +L N + KQ++ D P+++E +D R++SR G+++ L + EM Sbjct: 296 GKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEM 355 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILT 389 R +IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ Sbjct: 356 RIAILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVID 410 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 ++A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+ Sbjct: 411 IDLARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLT 469 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 K +T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 470 KELTTLSLPSIGDSFGGRDHTTVMHGIRAVSKLREEDPELAQDYEKLLILIQ 521 >gi|284028000|ref|YP_003377931.1| chromosomal replication initiator protein DnaA [Kribbella flavida DSM 17836] gi|283807293|gb|ADB29132.1| chromosomal replication initiator protein DnaA [Kribbella flavida DSM 17836] Length = 604 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 130/391 (33%), Positives = 207/391 (52%), Gaps = 14/391 (3%) Query: 115 ALPSVEKTASSPSITKLSPINTNISKSP--IILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 + P + P ++ +++ P + + L+ ++ F TF+ GSS Sbjct: 218 SAPDAIGQHNHPLHQQVQQPLGSVAPPPNGSAPSQTATEAHGEARLNPKYTFETFVIGSS 277 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR A AA ++AE Y NP I+ GLGKTHLL AI + RV Y+ Sbjct: 278 NRFAHAAAVAVAEAPGKAY-----NPQLIYGDSGLGKTHLLHAIGHYVRSLYTGARVRYV 332 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 ++E F F +AIRD+ A + R++D+LLIDD+QFL+GK Q EF H N+L ++ Sbjct: 333 SSEEFTNDFINAIRDDKASQFQRRYRDVDVLLIDDIQFLEGKIQTQEEFFHTFNTLHNAN 392 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V ++DR P LE+L+ R+R+R + G+ + D E R +IL+ + A + L Sbjct: 393 KQIVISSDRAPKRLEALEDRLRNRFEWGLITDIQPPDLETRIAILRKKAATER-----LT 447 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMR 410 EVL +A V T+ REL+GA ++ S + +A+ +L L+ G ++ Sbjct: 448 APPEVLEFIASKVQTNIRELEGALIRVTAFASLNRQPVDLSLAEIVLKDLIPEGSKPEVT 507 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 I A ++ +S +DL + R R +V RQ+AMYL + +T S P+IG++FG RDHT Sbjct: 508 ASMIMGQTASYFGLSIDDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFGGRDHT 567 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TV+HA RK+ +++ ++ +V L I Sbjct: 568 TVMHAERKIRQLMSERRSVFNQVTELTNRIK 598 Score = 54.7 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 14/98 (14%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + +T V + L P+ +W + ++ + ++VP +F + ++ R + Sbjct: 46 DLDEAWTRVLAGL----PPNQ-RAWLTNSRPVTLHESTAIVAVPDDFTRGQLETRLRPDL 100 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL 131 ++ E R + + V P + + A + + Sbjct: 101 ERILSESFGRDIRIAVTVDPSLDPELREPAPQQPVQEP 138 >gi|167589705|ref|ZP_02382093.1| chromosomal replication initiation protein [Burkholderia ubonensis Bu] Length = 357 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 126/356 (35%), Positives = 201/356 (56%), Gaps = 13/356 (3%) Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 +T S S L+ F F+ G +N++A AA +A+ Y NPLF++ VGL Sbjct: 12 ETDSMYERSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFLYGGVGL 66 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI N + +P R+ Y+ AE ++ A + + K ++DLLLIDD Sbjct: 67 GKTHLIHAIGNQLLLDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDD 126 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QF GK Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + Sbjct: 127 IQFFSGKSRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEP 186 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-A 385 + EMR +IL + + + +N++E+V VA+ + ++ REL+GA +++ F Sbjct: 187 PELEMRVAIL-----MRKAQSEGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHG 241 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++ E+ E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+A Sbjct: 242 REISIELTKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIA 300 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL+K +T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 301 MYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 356 >gi|225855736|ref|YP_002737247.1| chromosomal replication initiation protein [Streptococcus pneumoniae P1031] gi|254777919|sp|C1CN66|DNAA_STRZP RecName: Full=Chromosomal replication initiator protein DnaA gi|225725753|gb|ACO21605.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae P1031] Length = 453 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 139/474 (29%), Positives = 233/474 (49%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAEVIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + + T+S + K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFTKPQDTTSSQVEEATNLTLYD-------YSPKLVSIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKIK 453 >gi|15826866|ref|NP_301129.1| chromosomal replication initiation protein [Mycobacterium leprae TN] gi|13092413|emb|CAC29509.1| putative chromosomal replication initiator protein [Mycobacterium leprae] Length = 521 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 134/506 (26%), Positives = 244/506 (48%), Gaps = 46/506 (9%) Query: 31 LEVNCESIFTIVSSRLKNQ----------------VGPDVYASWFQRLKFHSVLHNIVHL 74 L + +++ V S L + + P +W ++ +++ L Sbjct: 24 LSLGFTTVWNAVVSELNGESNTDDEATNDSTLVTPLTPQQ-RAWLNLVQPLTIIEGFALL 82 Query: 75 SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 SVP++F++ I+ IT + + + + + ++ +SS + Sbjct: 83 SVPSSFVQNEIERHLRTPITDALSRRLGQQIQLGVRIAPPSTDHIDDNSSSADVLLTDDC 142 Query: 135 NTNISK---SPIILGKQTISPVF-------------GSPLDSRFVFSTFIEGSSNRVALT 178 T+ + P+ Q + F G+ L+ R+ F TF+ G+SNR Sbjct: 143 GTDTDENYGEPLTGEYQGLPTYFTERPHHTESTVTGGTSLNRRYTFETFVIGASNRF--- 199 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 A + NPLFI GLGKTHLL A N + + P +RV Y++ E F Sbjct: 200 --AHAAALAIAEAPARAYNPLFIWGESGLGKTHLLHAAGNYAQRLFPGMRVKYVSTEEFT 257 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 F +++RD+ + K S R++D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V + Sbjct: 258 NDFINSLRDDRKVAFKRSYRDVDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVIS 317 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DRPP +L +L+ R+R+R + G+ + + E R +IL+ + + +L + +VL Sbjct: 318 SDRPPKQLATLEDRLRTRFEWGLITDVQPPELETRIAILRK-----KAQMERLAVPGDVL 372 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQR 416 +A ++ + REL+GA ++ S + +A+ +L L+ T ++ I Sbjct: 373 ELIASSIERNIRELEGALIRVTAFASLNKTAIDKALAEIVLRDLIADASTMQISAATIMT 432 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 A++++ + +L + R + + RQ+AMYL + +T S P+IG+ FG RDHTTV++A Sbjct: 433 ATAEYFDTTIEELRGPGKTRALAQSRQIAMYLCRELTDLSLPKIGQAFG-RDHTTVMYAQ 491 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 RK+ + + V+ L I + Sbjct: 492 RKILSEMAERREVFDHVKELTTRIRQ 517 >gi|329118144|ref|ZP_08246856.1| DNA-directed DNA replication initiator protein DnaA [Neisseria bacilliformis ATCC BAA-1200] gi|327465804|gb|EGF12077.1| DNA-directed DNA replication initiator protein DnaA [Neisseria bacilliformis ATCC BAA-1200] Length = 508 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 140/516 (27%), Positives = 234/516 (45%), Gaps = 59/516 (11%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + + +W L F ++N++ E Sbjct: 4 LTLAEFWPLCLRRLHDTLDARQFDTWIAPLTVDEEDGAWAV-YAKNQFSANMLRNQFAEA 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK---------------------- 130 + + E + A + A++P Sbjct: 63 VEAVRAELAPAQSPLVFKAGRGASYPMAAAAAAPPQRPSENSGEPAPAAAAKGKQAAKPS 122 Query: 131 ----------------------LSPINTNISKSPIILGKQTISPVF-GSPLDSRFVFSTF 167 +P T + +P + + S L S + F T Sbjct: 123 AQDILAERLKNLPPRAQAADETPAPRKTAAATAPKDTAAEERDAHYARSNLSSDYTFETL 182 Query: 168 IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNL 227 +EG NR+A AA+SIAE Y NP F++ S GLGKTHL+QA+ N +K +P+ Sbjct: 183 VEGKGNRMAAAAARSIAENPGKSY-----NPFFLYGSTGLGKTHLVQAVGNELLKNRPDA 237 Query: 228 RVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNS 286 +V Y+ ++ ++ F A+R N K + DLL+IDD+QF++GK EF +L N Sbjct: 238 KVRYMHSDEYIRSFMKAVRHNGYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNH 297 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 + KQ++ D P+++E +D R++SR G+++ L ++EMR +IL+ + E Sbjct: 298 FHNEKKQLILTCDVLPAQIEGMDDRLKSRFSWGLTLELEPPEFEMRVAILQK-----KAE 352 Query: 347 DPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGE 405 + + E+ +A+ + ++ REL+GAF ++ F + ++A E L +V + Sbjct: 353 ASGVTLCEDAAFFIAKYIRSNVRELEGAFKRVEASSRFQQKPIDIDLATEALQDIVASTY 412 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 K + E I VAKHY + ++LL +R R + RPRQVAM L+K +T S P IG FG Sbjct: 413 -KVITAELILDAVAKHYRVKISELLGKKRTRNIARPRQVAMSLTKDLTNLSLPAIGDAFG 471 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTV+H ++ V K+ D L ++ E L L+ Sbjct: 472 GRDHTTVMHGIKAVAKLRGEDPELAQDYEKLLLLLQ 507 >gi|300934349|ref|ZP_07149605.1| chromosomal replication initiation protein [Corynebacterium resistens DSM 45100] Length = 584 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 120/362 (33%), Positives = 202/362 (55%), Gaps = 14/362 (3%) Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 SP + L+ + F TF+ GSSN A A +++AE + Y NPLF Sbjct: 229 SPAGNQSAGKETESETLLNKNYTFETFVIGSSNNFANAACRAVAESPAKAY-----NPLF 283 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I GLGKTHLL AI + + + +PN+RV Y+++E F ++I + K RN+ Sbjct: 284 IWGESGLGKTHLLHAIGHYAKELRPNMRVRYVSSEELTNDFINSIATDTREAFKRRYRNV 343 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+L++DD+QFL+GK Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R +GG Sbjct: 344 DMLIVDDIQFLEGKESTQEEFFHTFNALHQANKQIVLSSDRPPKKLTTLEDRLRTRFEGG 403 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++ + D E R +IL + + + + E+V +A TS R L+GA +++ Sbjct: 404 LTTDVTSPDLETRIAILSK-----KAQLEGIQLPEDVKQLIANRYDTSIRVLEGALIRVI 458 Query: 380 FRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 S ++ E A+ L + T ++ + + +VA ++N++ ++L+ R R Sbjct: 459 AYCSLGDEPISLEAAEVALRDI--NNGTVEVTPQAVIEVVAHYFNLTTDELVGKGRSRRF 516 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+ RQ+AMYL + +T S P++G FG RDHTTV++A R++ + L + + +V+ L + Sbjct: 517 VQARQIAMYLCRELTDLSLPKLGAAFGGRDHTTVMYAERRIRESLTENKKVFDQVQELTQ 576 Query: 499 LI 500 I Sbjct: 577 KI 578 >gi|288926565|ref|ZP_06420482.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella buccae D17] gi|288336642|gb|EFC75011.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella buccae D17] Length = 469 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 122/474 (25%), Positives = 230/474 (48%), Gaps = 19/474 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 ++V+ +++ + + V + +WF+ + F S L VP+ F+ +++ Sbjct: 1 MKVSPNALWDKSLALIGENVTKQQFVTWFKPIVFESFNEESKTLLVQVPSPFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPS---VEKTASSPSITKLSPINTNISKSPIIL 145 Y++ ++++ + + GV + R V + + P+ L P + Sbjct: 61 YVDLLSRVLRRTYG--TGVRLSYRVVTDKEHNLSQDIEAEPTDLALRPQAKTQANKSPTA 118 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 L+ F+ +IEG SN++ + SIAE + T + NP+FI+ Sbjct: 119 LDAAQLQALDPQLNPHLTFNNYIEGDSNKLPRSIGLSIAEHPN----TTQFNPMFIYGPS 174 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GKTHL+ AI + + P RV+Y++A F ++ SA+ N + + IDLL++ Sbjct: 175 GCGKTHLVNAIGLHAKQLYPQKRVLYVSARLFQVQYTSAVLQNTLNDFIKFYQTIDLLIV 234 Query: 266 DDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q Q F H+ N L + K+++ A+DRPP +L+ + R+ +R G+ L Sbjct: 235 DDIQEWMTATKTQETFFHIFNHLFKNGKRIILASDRPPVDLKGMPDRLLTRFSCGLIAEL 294 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-S 383 + ++ IL++++ L I + V+ ++A + S R L+G N L+ + Sbjct: 295 EKPNVQLCIDILQSKIRRD-----GLKIPDNVVQYIAENASGSVRGLEGVINGLLAYSIT 349 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + ++A+ + VN E K + ++DI V H+N++ + S R R +V RQ Sbjct: 350 YNCDINLKLAERCIKRAVNI-EDKPITVDDIIEKVCNHFNVTATAVNSKCRKRDLVVARQ 408 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 V+MYL++ T IG+ G+RDH+TV+H+ +VE+ L+ D EV ++ Sbjct: 409 VSMYLAQKYTKMPASRIGKLVGNRDHSTVIHSCTQVERRLKADHAFYDEVTSIE 462 >gi|322373978|ref|ZP_08048512.1| replication initiation protein DnaA [Streptococcus sp. C150] gi|321276944|gb|EFX54015.1| replication initiation protein DnaA [Streptococcus sp. C150] Length = 454 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 137/477 (28%), Positives = 233/477 (48%), Gaps = 29/477 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + + + K ++ + + K V N+ + + K + + Sbjct: 1 MTEKEQFFWNKLLELAKEELTQATFDYYVLDTKLIKVQDNVATILLE-EVKKLFWEKNMQ 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 I E ++ +E + L V + ++ + + + Sbjct: 60 SVILLAGFEVYNSKIEIEYVFDEALLNQVHQNVTTNDFSSNKDLQSPA------------ 107 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P S L+S++ F FI+G NR ++ A+ ++A+ Y NPLFI+ GLGKT Sbjct: 108 LPTLNSDLNSKYTFDNFIQGDENRWSVAASLAVADSPGATY-----NPLFIYGGPGLGKT 162 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N + P R+ Y+TAE F+ F IR + LK R++D+LLIDD+Q Sbjct: 163 HLLNAIGNKVLHDNPQARIKYITAENFINEFVVHIRLDKMDELKLKYRHLDVLLIDDIQS 222 Query: 271 LQGKLIQ---HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L K Q EF + N L ++ KQ+V +DR P +L ++ R+ +R + G++V + Sbjct: 223 LAKKSTQATQEEFFNTFNVLHNNNKQIVLTSDRNPDQLNEMEERLVTRFKWGLTVNITPP 282 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFA 385 D+E R +IL N + D + E + ++A ++ R+L+GA LV Sbjct: 283 DFETRVAILTN-----KIMDYDYHFPSETIEYLAGQFDSNVRDLEGALKDISLVANVRQL 337 Query: 386 PILTAEIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T E+A E + ++ + + IEDIQ V K YN++ ++ + +R + +V RQV Sbjct: 338 DTITVEVAAEAIRARKMDGPKLTLIPIEDIQTEVGKFYNVTVKEIKATKRTQNIVLARQV 397 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYL++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E++ +K I Sbjct: 398 AMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDDSLRIEIDTIKNKIK 454 >gi|220915124|ref|YP_002490428.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-1] gi|219952978|gb|ACL63362.1| chromosomal replication initiator protein DnaA [Anaeromyxobacter dehalogenans 2CP-1] Length = 458 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 133/475 (28%), Positives = 230/475 (48%), Gaps = 26/475 (5%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +E + +++ + L+ + D+Y WF+ L+ S+ + + P F + ++++ Sbjct: 6 SALVETPLDDLWSRIDGFLRARCREDLYERWFEPLRPVSLDEGRLQIGAPDKFHRDFVED 65 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 Y + E + V P A +P+ + Sbjct: 66 NYRGWFEEFIPELTGERLRIAFAVDDAPRPIGAAAAPAPAAVAA-----------ARAPE 114 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + P P + R+ F TF+ G+SN A AAQ++A NPLF+H GL Sbjct: 115 PHLDPRDSRP-NPRYAFDTFVVGASNHFAFAAAQAVAANPGR-----TWNPLFLHGDSGL 168 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL A+A+A +++ RV +++E + F +A+ + R LL+DD Sbjct: 169 GKTHLLHAVAHAILEKSGG-RVAIVSSERYTNDFVAALSKGTMDEFRRKYRECSALLVDD 227 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFL GK EF H N L D Q+V ++DR P EL+ LD R+ SR + G+ V + + Sbjct: 228 VQFLAGKDKTAEEFFHTFNELHDHHVQIVLSSDRSPKELKGLDERLCSRFEWGMRVQIEV 287 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 ++E R +IL+ + + K+++ ++V +A+ + ++ REL+GA +L S Sbjct: 288 PEFETRAAILQK-----KADVEKIDLPDDVTQLLAQHIRSNVRELEGALMRLAAFASLKS 342 Query: 387 I-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T +A ++L+ ++ + IE IQ VA HY ++ L S R + + PRQVA Sbjct: 343 EPITVPLARDVLADVIPPPGYRP-PIEKIQEAVAGHYGLTVAKLTSASREQKIAFPRQVA 401 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + + F I +F +DHTTV+ AV +V+ +LE+D ++ V L + Sbjct: 402 MYLCRELAKEKFQSIAEKFNKKDHTTVIAAVDRVKGLLESDDAVRTAVAQLSAKL 456 >gi|15674251|ref|NP_268424.1| chromosomal replication initiation protein [Streptococcus pyogenes M1 GAS] gi|19745202|ref|NP_606338.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS8232] gi|21909537|ref|NP_663805.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS315] gi|28894913|ref|NP_801263.1| chromosomal replication initiation protein [Streptococcus pyogenes SSI-1] gi|50913347|ref|YP_059319.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS10394] gi|56808865|ref|ZP_00366576.1| COG0593: ATPase involved in DNA replication initiation [Streptococcus pyogenes M49 591] gi|71902668|ref|YP_279471.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS6180] gi|71909815|ref|YP_281365.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS5005] gi|94987632|ref|YP_595733.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS9429] gi|94989510|ref|YP_597610.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS10270] gi|94991498|ref|YP_599597.1| chromosomal replication initiation protein [Streptococcus pyogenes MGAS2096] gi|139472889|ref|YP_001127604.1| chromosomal replication initiation protein [Streptococcus pyogenes str. Manfredo] gi|61212508|sp|Q5XEM7|DNAA_STRP6 RecName: Full=Chromosomal replication initiator protein DnaA gi|61222629|sp|P0A3A4|DNAA_STRP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|61222631|sp|P0A3A5|DNAA_STRP3 RecName: Full=Chromosomal replication initiator protein DnaA gi|61222632|sp|P0A3A6|DNAA_STRP8 RecName: Full=Chromosomal replication initiator protein DnaA gi|122987157|sp|Q1JP60|DNAA_STRPC RecName: Full=Chromosomal replication initiator protein DnaA gi|123382367|sp|Q1JEA5|DNAA_STRPB RecName: Full=Chromosomal replication initiator protein DnaA gi|123382466|sp|Q1JJA7|DNAA_STRPD RecName: Full=Chromosomal replication initiator protein DnaA gi|123761459|sp|Q48VX2|DNAA_STRPM RecName: Full=Chromosomal replication initiator protein DnaA gi|166215363|sp|A2RBX3|DNAA_STRPG RecName: Full=Chromosomal replication initiator protein DnaA gi|8037923|gb|AAF71535.1|AF255728_1 chromosomal initiator protein DnaA [Streptococcus pyogenes] gi|13621326|gb|AAK33146.1| Chromosomal initiator protein [Streptococcus pyogenes M1 GAS] gi|19747291|gb|AAL96837.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS8232] gi|21903717|gb|AAM78608.1| chromosomal initiator protein [Streptococcus pyogenes MGAS315] gi|28810158|dbj|BAC63096.1| chromosomal initiator protein [Streptococcus pyogenes SSI-1] gi|50902421|gb|AAT86136.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS10394] gi|71801763|gb|AAX71116.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS6180] gi|71852597|gb|AAZ50620.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS5005] gi|94541140|gb|ABF31189.1| chromosomal replication initiator protein [Streptococcus pyogenes MGAS9429] gi|94543018|gb|ABF33066.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes MGAS10270] gi|94545006|gb|ABF35053.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes MGAS2096] gi|134271135|emb|CAM29345.1| chromosomal replication initiator protein [Streptococcus pyogenes str. Manfredo] Length = 451 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 144/479 (30%), Positives = 244/479 (50%), Gaps = 36/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ Y + + V +I + YL Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLLKVDKHIATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF E++ + ++++ + + + + I N +K +Q + Sbjct: 47 DQMKELFWEKNLK----DVILTAGFEVYNAQISVDYVFEEDLMIEQNQTKINQKPKQQAL 102 Query: 151 S--PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + P S L+S++ F FI+G NR A+ A+ ++A Y NPLFI GLG Sbjct: 103 NSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+ Sbjct: 158 KTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217 Query: 269 QFLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 Q L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 QSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNIT 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PPDFETRVAILTN-----KIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFK 332 Query: 386 PI--LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I +T +IA E + G + IE+IQ V K Y ++ ++ + +R + +V R Sbjct: 333 QIDTITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLAR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 QVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKIK 451 >gi|300172303|ref|YP_003771468.1| chromosomal replication initiator protein DnaA [Leuconostoc gasicomitatum LMG 18811] gi|299886681|emb|CBL90649.1| chromosomal replication initiator protein DnaA [Leuconostoc gasicomitatum LMG 18811] Length = 448 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 142/477 (29%), Positives = 232/477 (48%), Gaps = 44/477 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP----TNFLKAWIKNR 88 + E ++ V ++ ++GP + ++ + L ++ + + L VP ++ + W Sbjct: 5 ITKEELWNQVKAKFYQEIGPVSFDTYIEPLVPVTLTESSIILEVPVDESSDIIDNW-NKS 63 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y + + E E+ + S ++ + Sbjct: 64 YAMSFVQYAMEIAEGFIKPELRIAEAIQKS------------------------TLIQTE 99 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 ++ S L+ F F F+ G+ N A A+++AE Y NP I+ VGLG Sbjct: 100 NLTFTRESDLNENFTFDKFVVGTGNENAYAIARAVAEDPGRVY-----NPYLIYGGVGLG 154 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLID 266 KTHL+QAI NA K P+ R+ Y TAE F+ F ++R + K R +DLLLID Sbjct: 155 KTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAVFKKEYRTVDLLLID 214 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK +Q EF + N L + KQ++ +D+ P+E+ L R+ SR + G+S+ + Sbjct: 215 DIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQ 274 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 D R +ILKN E L I +VL +A + ++ R L+G F++ + Sbjct: 275 KPDLPTRVAILKNL-----AETDNLEIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRYR 329 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 T E A ++L L N + K+ +E IQ++VA +Y + +DL S R + +V R V Sbjct: 330 NKPATKETAQKILGDL-NINQGFKITVERIQQVVADYYMQTIDDLKSTSRKKDLVTARHV 388 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYL++ +T S P+IGR FG RDH++VLHA K+ + E+D K+ +E L I Sbjct: 389 AMYLTRTLTNESLPDIGRSFGGRDHSSVLHATNKITEKAESDARTKEMLEALTDEIK 445 >gi|332294862|ref|YP_004436785.1| Chromosomal replication initiator protein dnaA [Thermodesulfobium narugense DSM 14796] gi|332177965|gb|AEE13654.1| Chromosomal replication initiator protein dnaA [Thermodesulfobium narugense DSM 14796] Length = 442 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 137/471 (29%), Positives = 239/471 (50%), Gaps = 37/471 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH-SVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +I+ + ++ ++G ++ + + + N + L VP F+K +I+ + + Sbjct: 2 NNIWQEILDVVEEKMGKPTVEAFLKPSRAIINKEDNKLTLIVPNEFIKTYIEQK-SGKLK 60 Query: 95 KLFQEEH-SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + ++ + + V N+S+ + + Sbjct: 61 NIIEDILEGENLKLSLEVDESI--------------------GNLSQEEYLENNNKVEKN 100 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S++ F TF+ G NR+A A+ ++A+ Y NPLFI+ GLGKTHLL Sbjct: 101 EQKGFLSKYTFETFVVGPGNRMAHAASLAVADNPGKAY-----NPLFIYGGAGLGKTHLL 155 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAIA ++PNL ++Y+T+E F F +AI+D+ + ++ RNID+LL+DD+QF+ G Sbjct: 156 QAIATTIRSKKPNLYILYITSEKFTNEFINAIKDDKINSFQEHYRNIDILLVDDIQFIAG 215 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L +S KQ+V ++DRPP E+ +L+ R+R+R + G+ + D E R Sbjct: 216 KERTQEEFFHTFNTLYESGKQIVLSSDRPPKEIRTLEERLRTRFEMGLIADIQPPDLETR 275 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTA 390 +IL+ + E ++I+ E L+ +A V ++ REL+G + + S +T Sbjct: 276 IAILQK-----KAEIENIDIDPEALVLIAEKVASNIRELEGVLTKSMALCSINQESRITI 330 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + A E L ++ + +++I V+K I DL S R RQ+AMYL + Sbjct: 331 KHAQEALKNIEDNKLNNLPTMDEIAIAVSKVMQIKLEDLKSRGRKSHQANARQIAMYLCR 390 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MT S P+IG FG RDH+TV+HA ++++ + D TLK+ +E ++ + Sbjct: 391 EMTKNSLPQIGEYFG-RDHSTVIHAYERIKEDINKDQTLKRIIEQIRSFLK 440 >gi|22536186|ref|NP_687037.1| chromosomal replication initiation protein [Streptococcus agalactiae 2603V/R] gi|25010076|ref|NP_734471.1| chromosomal replication initiation protein [Streptococcus agalactiae NEM316] gi|76787564|ref|YP_328728.1| chromosomal replication initiation protein [Streptococcus agalactiae A909] gi|76797986|ref|ZP_00780245.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 18RS21] gi|77405627|ref|ZP_00782716.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae H36B] gi|77407687|ref|ZP_00784442.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae COH1] gi|77411769|ref|ZP_00788105.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae CJB111] gi|77413657|ref|ZP_00789842.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 515] gi|61212814|sp|Q8E2I7|DNAA_STRA5 RecName: Full=Chromosomal replication initiator protein DnaA gi|61212815|sp|Q8E7Z4|DNAA_STRA3 RecName: Full=Chromosomal replication initiator protein DnaA gi|123744534|sp|Q3K425|DNAA_STRA1 RecName: Full=Chromosomal replication initiator protein DnaA gi|22533003|gb|AAM98909.1|AE014191_1 chromosomal replication initiator protein DnaA [Streptococcus agalactiae 2603V/R] gi|23094427|emb|CAD45646.1| replication initiation protein DnaA [Streptococcus agalactiae NEM316] gi|76562621|gb|ABA45205.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae A909] gi|76586666|gb|EAO63165.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 18RS21] gi|77160312|gb|EAO71438.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae 515] gi|77162160|gb|EAO73135.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae CJB111] gi|77173686|gb|EAO76800.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae COH1] gi|77175771|gb|EAO78551.1| chromosomal replication initiator protein DnaA [Streptococcus agalactiae H36B] Length = 453 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 144/477 (30%), Positives = 238/477 (49%), Gaps = 32/477 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA-WIKNRY 89 + N + + V ++Q+ P Y + + + H +++ +K + + Sbjct: 1 MTENEQLFWNRVLELSRSQIAPAAYEFFVLEARLLKIEHQTAVITLDNIEMKKLFWEQNL 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I G EI + V + + ++ + + + K Sbjct: 61 GPVILTA---------GFEIFNAEITANYVSNDLHLQETSFSNYQQSSNEVNTLPIRK-- 109 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S L ++ F+ F++G NR A++A+ ++A+ Y NPLFI GLGK Sbjct: 110 ----IDSNLKEKYTFANFVQGDENRWAVSASIAVADSPGTTY-----NPLFIWGGPGLGK 160 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AI N ++ PN RV+Y+TAE F+ F S IR + LK+ RN+DLLLIDD+Q Sbjct: 161 THLLNAIGNQVLRDNPNARVLYITAENFINEFVSHIRLDSMEELKEKFRNLDLLLIDDIQ 220 Query: 270 FLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 L K Q EF + N+L + KQ+V +DR P++L L+ R+ +R G+ V + Sbjct: 221 SLAKKTLGGTQEEFFNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVNITP 280 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-- 384 D+E R +IL N + ++ + ++ + ++A ++ REL+GA + F Sbjct: 281 PDFETRVAILTN-----KIQEYPYDFPQDTIEYLAGEFDSNVRELEGALKNISLVADFKH 335 Query: 385 APILTAEIADELLSHLVNTGE-TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 A +T +IA E + N G + IE+IQ V K Y ++ ++ + +R + +V RQ Sbjct: 336 AKTITVDIAAEAIRARKNDGPIVTVIPIEEIQIQVGKFYGVTVKEIKATKRTQDIVLARQ 395 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 VAMYL++ MT S P+IG+ FG RDH+TVLHA K++ M+ D L+ E+E +K I Sbjct: 396 VAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMVAQDDNLRIEIETIKNKI 452 >gi|225860013|ref|YP_002741522.1| chromosomal replication initiation protein [Streptococcus pneumoniae Taiwan19F-14] gi|254777920|sp|C1CU44|DNAA_STRZT RecName: Full=Chromosomal replication initiator protein DnaA gi|225727811|gb|ACO23662.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae Taiwan19F-14] gi|327388986|gb|EGE87334.1| chromosomal replication initiator protein DnaA [Streptococcus pneumoniae GA04375] Length = 453 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 139/474 (29%), Positives = 233/474 (49%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + + T+S + K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFTKPQDTTSSQVEEATNLTLYD-------YSPKLVSIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHVKIKSLIDQDDNLRLEIESIKKKIK 453 >gi|326386028|ref|ZP_08207652.1| chromosomal replication initiator protein DnaA [Novosphingobium nitrogenifigens DSM 19370] gi|326209253|gb|EGD60046.1| chromosomal replication initiator protein DnaA [Novosphingobium nitrogenifigens DSM 19370] Length = 506 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 162/500 (32%), Positives = 270/500 (54%), Gaps = 23/500 (4%) Query: 9 CIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV- 67 E A + D+ L++ + + +S LK +G +++ W + ++ S Sbjct: 24 TPSRKGRESAARDGGAGEDQDALDLAAD--WADISQGLKKDLGSQLHSQWIKPIQVGSFC 81 Query: 68 -LHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV--RSVALPSVEKTAS 124 + L +PT F W+ +R+ + ++ ++ S ++ V I V R A+P + Sbjct: 82 KETGTLDLFLPTEFSANWVADRFSDRLSLAWKIARSEVRQVRIGVHPRRRAMPDLRMPGD 141 Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 S + + + + LD F+ F+ GS N +A+ AAQ +A Sbjct: 142 SAPAPRAAAPAPAPLPVDPLTVATAHN-----GLDPSLTFAEFVTGSGNVLAVNAAQRMA 196 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 T + +PL++ AS G GKTHLL AI +A +P R+ Y +AE FM F A Sbjct: 197 -----ALETPQFSPLYLKASTGQGKTHLLHAIGHAYAAAKPGARIFYCSAERFMIEFVQA 251 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +R + + K LR+ DLLL+DD+QF+ GK Q EF H +++LL + K++V AADR P Sbjct: 252 MRQHEMIEFKARLRSFDLLLVDDIQFIIGKASTQEEFLHTIDALLSAGKRLVVAADRAPQ 311 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L+ ++ R+ SRL G+ + D E+R IL++RL+ + ++V+ +ART Sbjct: 312 ALDGVEQRLLSRLSMGLVADIQPADIELRRKILQHRLSRFAAT----AVPDDVIEFLART 367 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + + REL G N+L+ ++ ++A+E L+ ++N +++ I++IQR V + Y Sbjct: 368 INRNVRELVGGLNKLIAYAQLTGQPVSLQLAEEQLTDILNAN-RRRITIDEIQRAVCQFY 426 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 + R ++ S RR R VVRPRQVAMYL+K++TPRS+PEIGR+FG RDH+TV+HAVR +E++ Sbjct: 427 RVDRTEMASKRRARAVVRPRQVAMYLAKVLTPRSYPEIGRKFGGRDHSTVIHAVRLIEEL 486 Query: 483 LETDITLKKEVELLKRLISE 502 D + +V L R + + Sbjct: 487 RTRDADMDGDVRTLLRQLED 506 >gi|296118604|ref|ZP_06837182.1| DNA-directed DNA replication initiator protein [Corynebacterium ammoniagenes DSM 20306] gi|295968503|gb|EFG81750.1| DNA-directed DNA replication initiator protein [Corynebacterium ammoniagenes DSM 20306] Length = 381 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 193/368 (52%), Gaps = 12/368 (3%) Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 S + I + P L+ F F+ GSSNR A AA ++AE + Y Sbjct: 19 QAPSSARIPRERPAHDPNREQSLNPTHTFDNFVIGSSNRFANGAAVAVAENPARAY---- 74 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLFI GLGKTHLL A N + LRV Y+++E F + +++RD+ + K Sbjct: 75 -NPLFIWGGSGLGKTHLLHAAGNYAQLLHKGLRVKYVSSEEFTNDYINSLRDDRQESFKR 133 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 RN+D+L++DD+QFL+GK Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+ Sbjct: 134 RYRNLDILMVDDIQFLEGKESTQEEFFHTFNALHQANKQIILSSDRPPKQLTTLEDRLRT 193 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R +GG+ + D E R +IL + + ++ VL +A +S REL+GA Sbjct: 194 RFEGGLITDIQPPDLETRIAIL-----MKKASADGTTVDRAVLELIASRFESSIRELEGA 248 Query: 375 FNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 ++ S + E+A+ L L +++ I + A+ +NI L + Sbjct: 249 LIRVSAYSSLVNEPINIEMAEVALRDLAPDSAAEQITPNTIIEVTAEFFNIDVATLTGSG 308 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + R + RQ+AMYL + +T S P++G +FG +DHTTV++A RK+ + + E+ Sbjct: 309 KKRDIAHARQLAMYLCRELTDLSLPKLGEQFGGKDHTTVMYAERKIRREMTEKRETYDEI 368 Query: 494 ELLKRLIS 501 + L + I Sbjct: 369 QALTQRIK 376 >gi|114568555|ref|YP_755235.1| chromosomal replication initiator protein DnaA [Maricaulis maris MCS10] gi|114339017|gb|ABI64297.1| chromosomal replication initiator protein DnaA [Maricaulis maris MCS10] Length = 482 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 159/469 (33%), Positives = 262/469 (55%), Gaps = 13/469 (2%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +I+ V + L+ + GP +Y+ RL+ + + P+NF + W+++ + I Sbjct: 24 ISAIWRRVRAHLREECGPALYSQEIARLRVRLSETGALVIIAPSNFNRDWVEDHWGARIR 83 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 L+ E + V +L P A P+ SP T ++ SP Sbjct: 84 ALWAELDPSHRDVHLLAEGQDAPQPVMAARLPAAASRSPAPTGLTADTAQTPADGTSPG- 142 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 D+RF F +F G +N VA AA+++ G +T NP+F + G+GKTHLL Sbjct: 143 ----DARFSFDSFRVGPANEVAAAAARTMV-----GASTPPFNPVFFYGDYGVGKTHLLH 193 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A+A+A+ + +YLTAE F+ F +A++ ++ K+++R +D+LLIDD+ F+ GK Sbjct: 194 AVASAARNGSRPRKALYLTAEEFLSGFVTAMKARDTISFKETVRGVDVLLIDDVHFIAGK 253 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 + EF H + +L+ KQVV A+ +PP+EL+ D R+RS L GG+S PLG D ++R Sbjct: 254 PKTEDEFLHTIAALVAENKQVVLASHKPPAELQMQDERLRSLLTGGLSCPLGKPDLDLRR 313 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL ++A + P +++E V +A +T+S RE++G N ++ R + +T E+ Sbjct: 314 QILDCKIAQATCHYPTFDVSEAVRDFLAARITSSPREMEGVLNNVICRTALIGQPVTMEV 373 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L L + +++ +++IQ++VA H+ IS D+ S RR + VVRPR +AMYL+K + Sbjct: 374 VSTALREL-SLSSERRLTVDEIQKVVATHFGISTADICSKRRTQAVVRPRHIAMYLAKTL 432 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T RS P+IGRRFG RDH+TV+HAV KV M++ ++ E++ L R + Sbjct: 433 TTRSLPDIGRRFGGRDHSTVIHAVSKVTGMIDAGDSVADEIDALTRELQ 481 >gi|306826410|ref|ZP_07459724.1| DNA-directed DNA replication initiator protein [Streptococcus pyogenes ATCC 10782] gi|304431405|gb|EFM34400.1| DNA-directed DNA replication initiator protein [Streptococcus pyogenes ATCC 10782] Length = 451 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 144/479 (30%), Positives = 244/479 (50%), Gaps = 36/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ Y + + V +I + YL Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLLKVDKHIATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF E++ + ++++ + + + + I N +K +Q + Sbjct: 47 DQMKELFWEKNLK----DVILTAGFEVYNAQISVDYVFEEDLMIEQNQTKINQKTKQQAL 102 Query: 151 S--PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + P S L+S++ F FI+G NR A+ A+ ++A Y NPLFI GLG Sbjct: 103 NSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+ Sbjct: 158 KTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217 Query: 269 QFLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 Q L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 QSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNIT 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PPDFETRVAILTN-----KIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFK 332 Query: 386 PI--LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I +T +IA E + G + IE+IQ V K Y ++ ++ + +R + +V R Sbjct: 333 QIDTITVDIAAEAIRARKQDGPKMTVIPIEEIQAQVGKFYGVTVKEIKATKRTQNIVLAR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 QVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKIK 451 >gi|307707899|ref|ZP_07644374.1| chromosomal replication initiator protein DnaA [Streptococcus mitis NCTC 12261] gi|307615964|gb|EFN95162.1| chromosomal replication initiator protein DnaA [Streptococcus mitis NCTC 12261] Length = 453 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 139/474 (29%), Positives = 237/474 (50%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWKKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + + + +P +T SP K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFTKPQDTIIPQ---VEEAPNSTLYDYSP----KLASIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K P+ RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPDARVKYIPAESFINDFLEHLRLGEMDKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N L ++ KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNVLHNNQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQNITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E+ + + L ++A ++ REL+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTENLDYHFQSDTLEYLAGQFDSNVRELEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQVAMY Sbjct: 340 TIDIAAEAIRARKQDVSQMLVIPIDKIQNEVGNFYGVSVKEMKGSRRLQNIVLARQVAMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDEDDNLRLEIESIKKKIK 453 >gi|254457518|ref|ZP_05070946.1| chromosomal replication initiator protein DnaA [Campylobacterales bacterium GD 1] gi|207086310|gb|EDZ63594.1| chromosomal replication initiator protein DnaA [Campylobacterales bacterium GD 1] Length = 435 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 118/469 (25%), Positives = 225/469 (47%), Gaps = 42/469 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRL--KFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +I V LK ++ Y + ++L ++ P + WIK++Y E I Sbjct: 2 NIGQEVLELLKEEITEVQYNRYIKQLIYDAKKSTSDLAIFYAPNALVNNWIKSKYSEKIA 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 LF+ + V+I +++ S I ++T + Sbjct: 62 HLFEVKSGSKVSVKITLKN-------------------------STDKRIKLQKTEQKLQ 96 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F+ G SN+ A A +S++E Y NPLFI+ VGLGKTHL+Q Sbjct: 97 HSLLNPSHTFDNFMVGGSNQFAYAAVKSVSESPGEVY-----NPLFIYGGVGLGKTHLMQ 151 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 + N + + V+Y + E F+ F +R+ + ++ R D+LLIDD+QFL K Sbjct: 152 SAGN--VFQNQGKSVIYTSVEQFLNDFIRHVRNKTMPSFQEKYRKCDVLLIDDIQFLSNK 209 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ EF H +L S KQ++ AD+ P ++ L+ R++SR + G+ + + E + Sbjct: 210 EGIQEEFFHTFEALKGSGKQIILTADKHPKKIGGLEKRLQSRFEWGLVADIQPPELETKI 269 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +I+K + I++ + ++ +++ ++A + ++ RE++G ++L I + Sbjct: 270 AIIKKKCEINK-----VKLSNDIINYIATVIESNVREIEGILSKLHAYSQLMHIDIDLAF 324 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 +L + + ++ I VAK NI ++ S R + +V R++++YL + + Sbjct: 325 TKNVLKDQLQENRA-NLTLDVITNNVAKDLNIKPTEIRSKGRSKNLVYARRISIYLCREL 383 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T + P++ + FG +DHT + H ++K+ ++++ D K ++E L I+ Sbjct: 384 TQNTMPQLAQYFGMKDHTAISHTLKKINELMKNDEDFKVKIEELTNKIT 432 >gi|15671983|ref|NP_266157.1| chromosomal replication initiation protein [Lactococcus lactis subsp. lactis Il1403] gi|281490499|ref|YP_003352479.1| chromosomal replication initiator protein DnaA [Lactococcus lactis subsp. lactis KF147] gi|14194668|sp|Q9CJJ2|DNAA_LACLA RecName: Full=Chromosomal replication initiator protein DnaA gi|12722836|gb|AAK04099.1|AE006239_1 replication initiation protein DnaA [Lactococcus lactis subsp. lactis Il1403] gi|281374317|gb|ADA63850.1| Chromosomal replication initiator protein DnaA [Lactococcus lactis subsp. lactis KF147] Length = 455 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 140/469 (29%), Positives = 241/469 (51%), Gaps = 27/469 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + V+ + +G Y + + + SV + ++ + + K + K + + IT Sbjct: 8 QKFWARVTELAQQSIGKQAYDFFIEPAQLMSVEQDTANILLDSGMKKDYWKKQ-SDLITT 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E R+ E+ ++ S + P +T SP++ Sbjct: 67 AGFEVFGRMIDYELYANDELTELELHRLNNQSSIEEQPRSTAKPASPLV----------- 115 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F F++G NR L AA ++A+ Y NPLFI+ GLGKTHL+ A Sbjct: 116 SGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGDTY-----NPLFIYGGAGLGKTHLMHA 170 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N + P R+ Y+++E F+ + +A R N N +++ RN+DLLL+DD+QF K Sbjct: 171 IGNQILTDNPTARIKYVSSENFVNDYVNATRKNQMENFENTYRNLDLLLLDDVQFFSDKE 230 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 ++EF + N+L D Q+V +DR P EL +L+ R+ SR G++ + DYE R + Sbjct: 231 GTKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMA 290 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAEI 392 IL + + E +L E L ++A + ++ REL+GA N++ F I + E Sbjct: 291 IL-----LIKSESSRLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGIAVVDIET 345 Query: 393 ADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A + L L N + + I+ IQ VA +Y+IS +DL+ +R + + PRQ+AMYL + Sbjct: 346 ASQALRSLKNATQQSLSNLTIKKIQDEVANYYHISFSDLVGPKRPKEIAFPRQIAMYLVR 405 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + S P IG FG RDHTTV++A +++ ++ D+ ++K+++ +KR Sbjct: 406 ELLGTSLPAIGTAFGGRDHTTVMYAYKQISDKMKNDMDVQKDIDSIKRK 454 >gi|301793326|emb|CBW35685.1| chromosomal replication initiator protein [Streptococcus pneumoniae INV104] Length = 453 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 138/474 (29%), Positives = 233/474 (49%), Gaps = 26/474 (5%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + + + ++ +Y + + + V N+ + +P ++ ++ + + Sbjct: 1 MKEKQFWNRILEFAQERLTRSMYDFYAIQAELIKVEENVATIFLP----RSEMEMVWEKQ 56 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + I EI + + T+S + K P Sbjct: 57 LKDIIVVAGFEIYDAEITPHYIFTKPQDTTSSQVEEATNLTLYD-------YSPKLVSIP 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L ++ F FI+G N A++AA +++E + Y NPLFI+ GLGKTHL Sbjct: 110 YSDTGLKEKYTFDNFIQGDGNVWAVSAALAVSEDLALTY-----NPLFIYGGPGLGKTHL 164 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N +K PN RV Y+ AE F+ F +R K + R++DLLLIDD+Q L Sbjct: 165 LNAIGNEILKNIPNARVKYIPAESFINDFLDHLRLGEMEKFKKTYRSLDLLLIDDIQSLS 224 Query: 273 GKL--IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF + N+L D KQ+V +DR P LE L+ R+ +R G++ + D+E Sbjct: 225 GKKVATQEEFFNTFNALHDKQKQIVLTSDRSPKHLEGLEERLVTRFSWGLTQTITPPDFE 284 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN--QLVFRHSFAPIL 388 R +IL+ S+ E N + L ++A ++ R+L+GA N L+ R + Sbjct: 285 TRIAILQ-----SKTEHLGYNFQSDTLEYLAGQFDSNVRDLEGAINDITLIARVKKIKDI 339 Query: 389 TAEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T +IA E + + I+ IQ V Y +S ++ +RR++ +V RQV+MY Sbjct: 340 TIDIAAEAIRARKQDVSQMLVIPIDKIQTEVGNFYGVSIKEMKGSRRLQNIVLARQVSMY 399 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 LS+ +T S P+IG+ FG +DHTTV+HA K++ +++ D L+ E+E +K+ I Sbjct: 400 LSRELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSLIDQDDNLRLEIESIKKKIK 453 >gi|297193296|ref|ZP_06910694.1| chromosomal replication initiator protein dnaA [Streptomyces pristinaespiralis ATCC 25486] gi|297151727|gb|EDY62296.2| chromosomal replication initiator protein dnaA [Streptomyces pristinaespiralis ATCC 25486] Length = 611 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 128/401 (31%), Positives = 206/401 (51%), Gaps = 21/401 (5%) Query: 112 RSVALPSVEKTASSP---SITKLSPINTNISKSPIILGKQTISPVFG----SPLDSRFVF 164 RS P + S P S+ + + S +P LG Q + L+ +++F Sbjct: 219 RSPQPPERRQYDSRPERHSMPEPQAPHRGPSGAPGPLGAQPAPAPGPGEPHARLNPKYLF 278 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 TF+ G+SNR A V NPLFI+ GLGKTHLL AI + + Sbjct: 279 DTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLY 333 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHL 283 P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Q EF H Sbjct: 334 PGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFHT 393 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL+ Sbjct: 394 FNTLHNANKQIVLSSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAILRK----- 448 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN 402 + +LN EVL +A ++ + REL+GA ++ S + + + +L L+ Sbjct: 449 KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIP 508 Query: 403 TGET--KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEI 460 GE ++ I A ++ ++ DL + R R +V RQ+AMYL + +T S P+I Sbjct: 509 GGEDAAPEITASAIMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKI 568 Query: 461 GRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 G +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 569 GAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 609 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Query: 34 NCESIFTIVSSRLKNQ----VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L ++ V P W +R + +++ + L+VP + K ++ R Sbjct: 35 DLAAVWPRVLEQLLDEGQQGVEPKD-KQWIERCQPLALVADTALLAVPNEWGKRVLEGRL 93 Query: 90 LETITKLFQEEHSRIQGVEILVRS 113 I++ E R + I V Sbjct: 94 APLISETLSRECGRPIRIAITVDE 117 >gi|15604996|ref|NP_219780.1| chromosomal replication initiation protein [Chlamydia trachomatis D/UW-3/CX] gi|76788997|ref|YP_328083.1| chromosomal replication initiation protein [Chlamydia trachomatis A/HAR-13] gi|237804620|ref|YP_002888774.1| chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|255311076|ref|ZP_05353646.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276] gi|255317377|ref|ZP_05358623.1| chromosomal replication initiation protein [Chlamydia trachomatis 6276s] gi|255348635|ref|ZP_05380642.1| chromosomal replication initiation protein [Chlamydia trachomatis 70] gi|255503175|ref|ZP_05381565.1| chromosomal replication initiation protein [Chlamydia trachomatis 70s] gi|255506853|ref|ZP_05382492.1| chromosomal replication initiation protein [Chlamydia trachomatis D(s)2923] gi|14194663|sp|O84277|DNAA2_CHLTR RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|3328688|gb|AAC67868.1| Replication Initiation Factor [Chlamydia trachomatis D/UW-3/CX] gi|76167527|gb|AAX50535.1| DnaA [Chlamydia trachomatis A/HAR-13] gi|231272920|emb|CAX09831.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/TZ1A828/OT] gi|289525314|emb|CBJ14790.1| Chromosomal replication initiation protein [Chlamydia trachomatis Sweden2] gi|296434864|gb|ADH17042.1| chromosomal replication initiation protein [Chlamydia trachomatis E/150] gi|296435791|gb|ADH17965.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9768] gi|296436716|gb|ADH18886.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11222] gi|296437651|gb|ADH19812.1| chromosomal replication initiation protein [Chlamydia trachomatis G/11074] gi|296438584|gb|ADH20737.1| chromosomal replication initiation protein [Chlamydia trachomatis E/11023] gi|297140150|gb|ADH96908.1| chromosomal replication initiation protein [Chlamydia trachomatis G/9301] Length = 455 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 138/466 (29%), Positives = 228/466 (48%), Gaps = 29/466 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + + +K + + +W ++ + L +P F+++++ + Y + + Sbjct: 8 STWEQFVNYIKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIFVQSYLLDNYKKDLCSF 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +E +V I + SP+ T P + + F Sbjct: 68 VPLDAEGNPALEFVV--------------AEIKRSSPLVTPSIAKPATEVSEE-NKDFQL 112 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ Sbjct: 113 KLNGAYRFDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLFIHGGVGLGKTHLLHAV 167 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + NLR+ +T E F+ +R +K+ R++DLLL+DD+QFLQ + Sbjct: 168 GHYVREHHKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQN 227 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + EFC+ +L+ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +I Sbjct: 228 FEEEFCNTFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWGLVAHVGVPDLETRVAI 286 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEIAD 394 L++ + E LNI E+ ++A V + R+L+GA N+L F LT Sbjct: 287 LQH-----KAEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVR 341 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L +K+ +E I + VA + + DL + R + V RQVAMYL+K + Sbjct: 342 DTLKELFRAPSKQKVSVESILKSVATVFQVKIQDLKGSSRAKNVPLARQVAMYLAKTLIT 401 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG + H+TVL+A + +E+ +E D LK ++ L K I Sbjct: 402 DSLVAIGAAFG-KTHSTVLYACKTIEQKIEKDALLKNQISLCKNNI 446 >gi|71275534|ref|ZP_00651820.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Dixon] gi|71900181|ref|ZP_00682321.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|170729252|ref|YP_001774685.1| chromosomal replication initiation protein [Xylella fastidiosa M12] gi|71163834|gb|EAO13550.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Dixon] gi|71730070|gb|EAO32161.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|167964045|gb|ACA11055.1| chromosomal replication initiator [Xylella fastidiosa M12] Length = 443 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 157/467 (33%), Positives = 246/467 (52%), Gaps = 34/467 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ RL+ + P+ +W + L+ + V L P F+ ++ RYL + +L Sbjct: 8 WSRCLERLETEFPPEDVHTWLRPLQAEQ-RGDSVILYAPNPFIIELVEERYLGRLRELLS 66 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLS-PINTNISKSPIILGKQTISPVFGSP 157 S I+ V + + S P T+L P++T SP + F Sbjct: 67 -YFSGIREVVLAI-----------GSRPKTTELPVPVDTTGRLSPTVP--------FNGN 106 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD+ + F F+EG SN++A AA A+ NPL ++ GLGKTHL+ A Sbjct: 107 LDTHYNFDNFVEGRSNQLARAAAWQAAQKPG----DRTHNPLLLYGGTGLGKTHLMFAAG 162 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + P +V+YL +E F A++D K ID LLIDD+QF GK Sbjct: 163 NVMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGKDRT 222 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + D+E R +I+ Sbjct: 223 QEEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIV 282 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 +++ + I +EV +A+ + ++ R+L+GA N LV R +F +T E + E Sbjct: 283 -----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQE 337 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+AM L+K +T Sbjct: 338 TLRDLLRAQQ-QTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLAMALAKELTEH 396 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 397 SLPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 443 >gi|166154486|ref|YP_001654604.1| chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|166155361|ref|YP_001653616.1| chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335746|ref|ZP_07223990.1| chromosomal replication initiation protein [Chlamydia trachomatis L2tet1] gi|165930474|emb|CAP03967.1| Chromosomal replication initiation protein [Chlamydia trachomatis 434/Bu] gi|165931349|emb|CAP06921.1| Chromosomal replication initiation protein [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 455 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 138/466 (29%), Positives = 228/466 (48%), Gaps = 29/466 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + + +K + + +W ++ + L +P F+++++ + Y + + Sbjct: 8 STWEQFVNYIKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIFVQSYLLDNYKKDLCSF 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +E +V I + SP+ T P + + F Sbjct: 68 VPLDAEGNPALEFVV--------------AEIKRSSPLVTPSIAKPATEVSEE-NKDFQL 112 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ Sbjct: 113 KLNGAYRFDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLFIHGGVGLGKTHLLHAV 167 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + NLR+ +T E F+ +R +K+ R++DLLL+DD+QFLQ + Sbjct: 168 GHYVREHHKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQN 227 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + EFC+ +L+ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +I Sbjct: 228 FEEEFCNTFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWGLVAHVGVPDLETRVAI 286 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEIAD 394 L++ + E LNI E+ ++A V + R+L+GA N+L F LT Sbjct: 287 LQH-----KAEQKGLNIPNEMAFYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVR 341 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L +K+ +E I + VA + + DL + R + V RQVAMYL+K + Sbjct: 342 DTLKELFRAPSKQKVSVESILKSVATVFQVKIQDLKGSSRAKNVPLARQVAMYLAKTLIT 401 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG + H+TVL+A + +E+ +E D LK ++ L K I Sbjct: 402 DSLVAIGAAFG-KTHSTVLYACKTIEQKIEKDALLKNQISLCKNNI 446 >gi|296314155|ref|ZP_06864096.1| DNA replication initiator protein [Neisseria polysaccharea ATCC 43768] gi|296839190|gb|EFH23128.1| DNA replication initiator protein [Neisseria polysaccharea ATCC 43768] Length = 518 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 146/529 (27%), Positives = 246/529 (46%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + P +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPPGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEHS-----------------------------------------RIQGVEILV 111 I + +E + + E+ Sbjct: 60 IEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHAVSEGMPVQEVLLDELQS 119 Query: 112 RSVALPSVEKTASS---------PSITKLSPINTNISKSPIILGKQTISPV-------FG 155 P+V KTA+ P + + + + +S + +T + Sbjct: 120 EEPVKPAVSKTAADILAERMKNLPHEPRQAAGSASRPESAAVAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|212715149|ref|ZP_03323277.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM 16992] gi|212661830|gb|EEB22405.1| hypothetical protein BIFCAT_00035 [Bifidobacterium catenulatum DSM 16992] Length = 491 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 133/487 (27%), Positives = 225/487 (46%), Gaps = 37/487 (7%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ + L + SW + + + + L VP+ + ++N + + + Sbjct: 15 VWSDALALLHQNPALSVRD-KSWLENVFPEGMWGPTIVLCVPSAAAQQTLQNELNQPLLE 73 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN-TNISKSPIILGKQTISPVF 154 +E + + P+ P T + T + PI + P Sbjct: 74 ALRESAEQDIFPAFKIAEKKEPAQPPVEEYPHFTPAPHVEETTQGQLPIPVAMPPERPNT 133 Query: 155 ------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + L+ F TF+ G SNR A T A ++AE H NPL I+ Sbjct: 134 FQRGQNRPLLDPKTHLNKNATFDTFVPGDSNRFARTVALAVAEGSGHD-----FNPLCIY 188 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-----NCALNLKDSL 257 GLGKTHLL AI N ++ + P+L+V Y+T+E F F A+ D Sbjct: 189 GGSGLGKTHLLNAIGNYALVKDPSLKVRYVTSEEFTNEFIEALGDTNQNSGQIKEFNRRY 248 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R +D+LLIDD+QFL GK +F H N+L + K++V A+D PP +L+ + R+ SR Sbjct: 249 REVDVLLIDDIQFLSGKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNERLISRF 308 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G++V + D E R +IL+ S N+ ++VL +A T + REL+GA N Sbjct: 309 ESGLTVDVKPPDLETRIAILRMIAHES-------NVQDDVLNLIAERFTENIRELEGALN 361 Query: 377 QLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 ++ S +T +A+ L T +++ DI VAK++ I+ +D++ R Sbjct: 362 RVTAMASLSGQPVTRALAEHTLQDFFATDV--EIKPTDIITQVAKYFYITFDDIVGRSRT 419 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 + + RQ+AMYL + +T S +IG+ FG +DHTTV+HA ++ ++ + V Sbjct: 420 KKIALARQIAMYLVRELTSMSLNDIGQVFGGKDHTTVMHAYTRISDEMQEKQEIYNYVTE 479 Query: 496 LKRLISE 502 L + + Sbjct: 480 LTLQLKQ 486 >gi|326405598|gb|ADZ62669.1| chromosomal replication initiator protein [Lactococcus lactis subsp. lactis CV56] Length = 455 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 140/469 (29%), Positives = 240/469 (51%), Gaps = 27/469 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + V+ + +G Y + + + SV + ++ + + K + K + + IT Sbjct: 8 QKFWARVTELARQSIGKQAYDFFIEPAQLMSVEQDTANILLDSGMKKDYWKKQ-SDLITT 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E R+ E+ ++ S + P T SP++ Sbjct: 67 AGFEVFGRMIDYELYANDELTELELHRLNNQSSIEEQPHFTAKPASPLV----------- 115 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F F++G NR L AA ++A+ Y NPLFI+ GLGKTHL+ A Sbjct: 116 SGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGDTY-----NPLFIYGGAGLGKTHLMHA 170 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N + P R+ Y+++E F+ + +A R N N +++ RN+DLLL+DD+QF K Sbjct: 171 IGNQILTDNPTARIKYVSSENFVNDYVNATRKNQMENFENTYRNLDLLLLDDVQFFSDKE 230 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 ++EF + N+L D Q+V +DR P EL +L+ R+ SR G++ + DYE R + Sbjct: 231 GTKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMA 290 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAEI 392 IL + + E +L E L ++A + ++ REL+GA N++ F I + E Sbjct: 291 IL-----LIKSESSRLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGIAVVDIET 345 Query: 393 ADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A + L L N + + I+ IQ VA +Y+IS +DL+ +R + + PRQ+AMYL + Sbjct: 346 ASQALRSLKNATQQSLSNLTIKKIQDEVANYYHISFSDLVGPKRPKEIAFPRQIAMYLVR 405 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + S P IG FG RDHTTV++A +++ ++ D+ ++K+++ +KR Sbjct: 406 ELLGTSLPAIGTAFGGRDHTTVMYAYKQISDKMKNDMDVQKDIDSIKRK 454 >gi|296110744|ref|YP_003621125.1| chromosomal replication initiation protein DnaA [Leuconostoc kimchii IMSNU 11154] gi|295832275|gb|ADG40156.1| chromosomal replication initiation protein DnaA [Leuconostoc kimchii IMSNU 11154] Length = 448 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 143/477 (29%), Positives = 232/477 (48%), Gaps = 44/477 (9%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP----TNFLKAWIKNR 88 + E ++ V ++ ++GP + ++ + L ++ + + L VP TN + W Sbjct: 5 ITQEELWNQVKAKFYQEIGPVSFDTYIEPLIPVTLTDSSIILEVPIDESTNIIDKW-NKS 63 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y + + E E+ V + + + Sbjct: 64 YAMSFVQYAMEIAEGFIKPELRV------------------------ADALPKSTAIQTE 99 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T++ S L+ F F F+ G+ N A A+++AE Y NP I+ VGLG Sbjct: 100 TLTFTRESDLNEAFTFDKFVVGTGNENAYAIARAVAEDPGKVY-----NPYLIYGGVGLG 154 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLID 266 KTHL+QAI NA K P+ R+ Y TAE F+ F ++R + K R +DLLLID Sbjct: 155 KTHLMQAIGNAYSKTTPSARIKYATAEDFLNDFTESLRAGEGATAAFKKEYRTVDLLLID 214 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF GK +Q EF + N L + KQ++ +D+ P+E+ L R+ SR + G+S+ + Sbjct: 215 DIQFWSGKEKVQEEFFNTFNVLTKTGKQIIMTSDKLPTEIVDLQSRLTSRFEAGISMDIQ 274 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 D R +ILKN E L+I +VL +A + ++ R L+G F++ + Sbjct: 275 KPDLPTRVAILKNL-----AETDNLDIPNDVLELIADKIDSNIRTLEGTFHRFEAMLRYR 329 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 T E A ++L L N + K+ ++ IQ++VA +Y + +DL S R + +V R V Sbjct: 330 NKPATKETAQKILGDL-NINQGFKVTVDRIQQVVADYYMQTIDDLKSTSRKKDLVTARHV 388 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AMYL++ +T S P+IGR FG RDH++VLHA K+ + E+D K+ + L I Sbjct: 389 AMYLTRTLTNESLPDIGRSFGGRDHSSVLHATNKITEKAESDPRTKEMLLALTDEIK 445 >gi|222152202|ref|YP_002561377.1| chromosomal replication initiation protein [Streptococcus uberis 0140J] gi|254777917|sp|B9DSN7|DNAA_STRU0 RecName: Full=Chromosomal replication initiator protein DnaA gi|222113013|emb|CAR40315.1| chromosomal replication initiator protein [Streptococcus uberis 0140J] Length = 451 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 142/477 (29%), Positives = 235/477 (49%), Gaps = 32/477 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + ++Q+ Y + + V + + + YL Sbjct: 1 MTENETIFWNRILELAQSQLKQTTYEFFVLDARLVKVENQVATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF E++ ++ V + + S I + S Sbjct: 47 DPMKELFWEQN--LKDVILTAGFEVFNAHISVNYQFEDDLASEIEESTSNHIFSRQTINS 104 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 P S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLGKT Sbjct: 105 LPAITSDLNPKYSFDNFIQGDENRWAVAASLAVANTPGTTY-----NPLFIWGGPGLGKT 159 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI NA + P RV Y+TAE F+ F IR + LK+ RN+DLLLIDD+Q Sbjct: 160 HLLNAIGNAVLLDNPKARVKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDIQS 219 Query: 271 LQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 220 LAKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEQRLVTRFKWGLTVNITPP 279 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F I Sbjct: 280 DFETRVAILTN-----KIQEYNFTFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFKEI 334 Query: 388 --LTAEIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +T +IA E + +T + + IE+IQ V K Y ++ ++ + +R + +V RQV Sbjct: 335 DKITVDIAAEAIRARKQDTPKMTIIPIEEIQTQVGKFYGVTVKEIKATKRTQNIVLARQV 394 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 395 AMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIIEDESLRIEIETIKNKIK 451 >gi|290959004|ref|YP_003490186.1| chromosomal replication initiator protein [Streptomyces scabiei 87.22] gi|260648530|emb|CBG71641.1| chromosomal replication initiator protein [Streptomyces scabiei 87.22] Length = 674 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 119/394 (30%), Positives = 197/394 (50%), Gaps = 14/394 (3%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 R E S + + P ++ + + L+ +++F TF+ G+ Sbjct: 289 RQDRRELPEPPPGSGHVHRGGPASSAPGPLAAQPAPASGPGEPTARLNPKYLFDTFVIGA 348 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SNR A V NPLFI+ GLGKTHLL AI + + P RV Y Sbjct: 349 SNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRY 403 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDS 290 +++E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ Sbjct: 404 VSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNA 463 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + +L Sbjct: 464 NKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQL 518 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETK 407 N EVL +A ++ + REL+GA ++ S + + + +L L+ + Sbjct: 519 NAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGENASP 578 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG +FG+R Sbjct: 579 EITATAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGNR 638 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 DHTTV+HA RK+ ++ ++ +V L I Sbjct: 639 DHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 672 Score = 58.1 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 21/151 (13%) Query: 34 NCESIFTIVSSRLKNQ-------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 + +++ V +L + V W +R + +++ + L+VP F K ++ Sbjct: 7 DLAAVWPRVLEKLLGEGHGQGVEVKD---ERWIKRCQPLALVADTALLAVPNEFAKGVLE 63 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 R +++ E R + I V S SV + P + + G Sbjct: 64 GRLAPIVSETLSRECGRPIRIAITVDS----SVGEQPPPPVQRRFEEPELPSVPAQSRDG 119 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 + +P G D+R G N+ A Sbjct: 120 YDSRAPYDGQGRDAR-------GGYENQNAY 143 >gi|229816997|ref|ZP_04447279.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM 20098] gi|229785742|gb|EEP21856.1| hypothetical protein BIFANG_02252 [Bifidobacterium angulatum DSM 20098] Length = 516 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 128/519 (24%), Positives = 229/519 (44%), Gaps = 62/519 (11%) Query: 33 VNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 V ++I++ + LK++ + P W + + +V + L V + ++N + Sbjct: 8 VQAKNIWSDALTLLKHKKSLSPRD-KGWLEGVTPEAVYGTTIVLCVDNASTRQALENELM 66 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + + + + + K S P K + + P+ ++ Sbjct: 67 QALLEALKIVTGQDMFPAFKIVPQQTAPEPKPESKPQPKKPASHVEEQPELPLNGPSPSL 126 Query: 151 SPVFGSP----------------------------------------LDSRFVFSTFIEG 170 + P L+ F TF+ G Sbjct: 127 DDLGKEPFGTAGPVPTVPSALQPQVSGDAEGQYGVDRNKVQRDPETHLNKNATFDTFVPG 186 Query: 171 SSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVV 230 SNR A T A ++AE NPL I+ GLGKTHLL AI N ++ + P L+V Sbjct: 187 DSNRFARTVALAVAEGSGKD-----FNPLCIYGGSGLGKTHLLNAIGNYALVKDPTLKVR 241 Query: 231 YLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLL 284 Y+ +E F+ F A++ R++D+LLIDD+QFL GK +F H Sbjct: 242 YVNSEEFLNEFIEALQIPSQSQGRIAEFNRRYRSVDVLLIDDIQFLGGKEATLEQFFHTF 301 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L + K++V A+D P L+ + R+ SR G++V + D E R +IL+ +++ Sbjct: 302 NALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMMASMNH 361 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNT 403 NI +VL +A T + REL+GA ++ S +T +A++ L T Sbjct: 362 S-----NIPNDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVTRAMAEQTLQDFFTT 416 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 +++ DI AK+++++ +D++ R++ + RQ+AMYL++ MT S +IG+ Sbjct: 417 DV--EIKPTDIISQAAKYFHLTFDDIVGRSRMKNIALARQIAMYLTREMTSMSLVDIGKV 474 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 FG +DHTTV+HA ++ ++ + V L + + Sbjct: 475 FGGKDHTTVMHACDRITNEMQQRQDIYNYVMELTVRLKQ 513 >gi|154496124|ref|ZP_02034820.1| hypothetical protein BACCAP_00408 [Bacteroides capillosus ATCC 29799] gi|150274679|gb|EDN01743.1| hypothetical protein BACCAP_00408 [Bacteroides capillosus ATCC 29799] Length = 426 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 133/458 (29%), Positives = 219/458 (47%), Gaps = 38/458 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ + +WF ++ + + PTNF + I+ RY+ I K E + Sbjct: 1 MEADMTATAINTWFDDCTAVALEEDRFVIHSPTNFKRDIIRKRYVPNIQKALHELFAADF 60 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 VE+L E AS P + P + + F Sbjct: 61 QVEVLGEGELDHFTE--ASKPVDSTFLPGTED------------------------YTFE 94 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ GSSN+ A AA S+AE Y NPLFI+ GLGKTHLL AIA+ +P Sbjct: 95 RFVVGSSNKFAHAAALSVAENPGKSY-----NPLFIYGESGLGKTHLLYAIAHKIHATRP 149 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI-QHEFCHLL 284 + RVVY+ + F AIR+ ++ R+ D+ L+DD+QF+ G+ Q E H Sbjct: 150 DFRVVYIKGDAFTNELIQAIREGSNQEFREKFRSADVFLMDDVQFIAGRESSQEEMFHTF 209 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L ++ +Q+V ADRPP E+ LD R+++R + G+ V + DYE R +I+KN + Sbjct: 210 NTLYEAGRQIVFTADRPPKEMLRLDDRLKTRFEWGLPVDIKPPDYETRVAIIKN-----K 264 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADELLSHLVNT 403 + + E VL ++A +T++ R+++G N+ L F+ + + + + Sbjct: 265 AIRRGMELPEPVLQYIAENITSNVRQIEGTVNKILAFQELMGESVDVDTVTRAVRDMFKE 324 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + I V K YNI + L R + RQ+AMYL + MT S EIG+ Sbjct: 325 KAEFLPSADVIIEEVCKFYNIENDALRGQGRTKDTALARQMAMYLIRRMTSLSLKEIGKE 384 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 F RDHTTV+H++ ++E +++++ + + ++ L I+ Sbjct: 385 FEGRDHTTVMHSIERIENLMKSNAEVAEIIKDLNANIN 422 >gi|296137751|ref|YP_003644994.1| chromosomal replication initiator protein DnaA [Tsukamurella paurometabola DSM 20162] gi|296025885|gb|ADG76655.1| chromosomal replication initiator protein DnaA [Tsukamurella paurometabola DSM 20162] Length = 490 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 136/488 (27%), Positives = 231/488 (47%), Gaps = 36/488 (7%) Query: 39 FTIVSSRLKNQVGPDVYAS----WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +T V L + W + ++ ++ ++VP+ +K I + I Sbjct: 10 WTAVVDDLCGESTDRTLTMQEKAWLRLVQPLTLTEGFALVAVPSQLMKDVIDRSLRDPII 69 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + + + + A P V A S + + P V Sbjct: 70 DALSMRLGQDVELGVRISPDATPPVTVAAEPDPPAGPSTADLPVPNLPPAAAPLEAPSVT 129 Query: 155 GSP-------------------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 P L+ ++ F TF+ G+SNR A Sbjct: 130 LPPPMTGPSSKSNGSSGSSGSSLNQKYTFETFVIGASNRF-----AHAAAFAVAEAPARA 184 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLFI GLGKTHLL A + + + P +RV Y++ E F F ++++D+ + K Sbjct: 185 YNPLFIWGESGLGKTHLLHAAGHYAQRLFPGMRVKYVSTEEFTNDFINSLKDDRQVQFKQ 244 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R++D+LL+DD+QFL+GKL IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+ Sbjct: 245 RYRDVDILLVDDIQFLEGKLGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEDRLRT 304 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R + G+ + + E+R +IL + + + ++++ +VL +A + + REL+GA Sbjct: 305 RFEWGLITDVQPPELEIRMAIL-----LKKAQMERIHVPHDVLELIATRIDRNIRELEGA 359 Query: 375 FNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 ++ S +T E+A+ +L LV T ++ I +VA+++ I+ DL Sbjct: 360 LIRVTAFASLTQTDVTYELAEMVLRDLVPDTTTIEISSSTILSVVAEYFEITVADLKGTE 419 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R V RQ+AMYL + +T S P+IG+ F DRDHTTV++A RK+ K + + +V Sbjct: 420 RARAVTHARQIAMYLCRELTELSLPKIGQIF-DRDHTTVMYAERKIRKEMPERRRVYDQV 478 Query: 494 ELLKRLIS 501 + L I Sbjct: 479 QELTTRIK 486 >gi|223038517|ref|ZP_03608811.1| chromosomal replication initiator protein DnaA [Campylobacter rectus RM3267] gi|222880374|gb|EEF15461.1| chromosomal replication initiator protein DnaA [Campylobacter rectus RM3267] Length = 436 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 120/465 (25%), Positives = 217/465 (46%), Gaps = 40/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNRYLETITKLF 97 V L ++ P + + ++LKF+ N + P + +I+ +Y I LF Sbjct: 4 NEVLELLSKEILPSEFECYIKQLKFNEKNSNSTNVVFNAPNEIIAKFIQTKYASKIAHLF 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + + + S K I S S Sbjct: 64 EVKTGQKPVINVQAASKTQSKPAKKVDVKEIKAQS-----------------------SL 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ G SN+ A +A++++E Y NPLFI+ GLGKTHLLQ++ Sbjct: 101 LNPSYTFENFVVGDSNQFAFLSAKAVSEQLGKIY-----NPLFIYGPTGLGKTHLLQSVG 155 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + V+ +T+E F+ F + ++ ++ RN D+LLIDD+QFL I Sbjct: 156 NFCL--NGGKMVICVTSEQFITDFTYNLNNHSMERFREKYRNCDVLLIDDVQFLGKTDKI 213 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L Q+V +DR P L+ + R+R+R + G+ + + + + +I+ Sbjct: 214 QEEFFHTFNELHAKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIIADITPPELDTKIAII 273 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADE 395 K + + + + EV+ ++A + + RE++ A L +T E A Sbjct: 274 KKKCEFDK-----IYLGIEVINYIATNMGDNIREIESAIINLNAYARLMRQEITLEFAKN 328 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L + + + +E I +V+K N+ +++ S R + +V R++ +YL+K +TP Sbjct: 329 ILRDQIKEK-RENINLESIVEIVSKELNVKPSEMKSKSRSKNIVEARRIVIYLAKNLTPN 387 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+I + F +DH+ V H+++K+ +++ET+ K VE LK I Sbjct: 388 SMPQIAQFFNMKDHSAVSHSIKKINELIETNEYFKIRVEELKNKI 432 >gi|27904525|ref|NP_777651.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29839271|sp|P59567|DNAA_BUCBP RecName: Full=Chromosomal replication initiator protein DnaA gi|27903922|gb|AAO26756.1| chromosomal replication initiator protein DnaA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 457 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 137/467 (29%), Positives = 259/467 (55%), Gaps = 16/467 (3%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 SI+ L+N++ P ++ W + LK NI+ L P F WIK+ Y+E + KL Sbjct: 4 SIWEKCLKYLQNKLSPIEFSMWIRPLKA-EFKKNILILYAPNEFSFNWIKDNYIENLKKL 62 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + + ++++ ++K + K + +N SK + + + ++ S Sbjct: 63 LKNFCNINTTPTLMLKICKPKIIQKKFFNELTLKKNILN---SKLTYNVNTKLSNIIYSS 119 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 +++ + F F +G SN++A IA Y NPLF++ GLGKTHLL A+ Sbjct: 120 EINTNYTFQNFTKGQSNQLAFKTIYKIAHNPGKNY----FNPLFLYGKSGLGKTHLLHAV 175 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 AN +K + ++++Y+ +E F+ +++++N K R+++ LLIDD+QF K Sbjct: 176 ANTILKYKNTIKIIYINSENFIQNMITSLKNNTIEEFKKYYRSVNTLLIDDIQFFAYKKH 235 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q E H +N+LL+ +Q++ +D+ P ++ ++ R++SR + G+++ + D R I Sbjct: 236 SQEELFHTINALLNRNQQIIITSDQFPQKIHGIETRLKSRFECGLTIRIDPPDLNTRTKI 295 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEIAD 394 L I + +N++ +V +A+ + ++ REL+GA N+++ S I+T A Sbjct: 296 L-----IKKSHIYDINLSYKVAFFIAKNLKSNIRELEGALNKILANSDSKKKIITINFAY 350 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L + K + I++IQ++V+ +Y+I+ +LLS R++++V+PRQ+AM +SK +T Sbjct: 351 KTLQELFSLP-KKSITIKNIQKVVSNYYHITIINLLSQCRLKSIVKPRQIAMAISKKLTN 409 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +S EIGR F R+H TVL+A +K++K+ E + +KK+ L +++S Sbjct: 410 KSLSEIGREFNGRNHATVLYACKKIKKLQEKNNNIKKDFLTLLKILS 456 >gi|302552694|ref|ZP_07305036.1| chromosomal replication initiator protein DnaA [Streptomyces viridochromogenes DSM 40736] gi|302470312|gb|EFL33405.1| chromosomal replication initiator protein DnaA [Streptomyces viridochromogenes DSM 40736] Length = 663 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 119/393 (30%), Positives = 191/393 (48%), Gaps = 14/393 (3%) Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 P + P T + L+ +++F TF+ G+S Sbjct: 279 PEPPPGSGHVHRGGPVGPNLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGAS 338 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR A V NPLFI+ GLGKTHLL AI + + P RV Y+ Sbjct: 339 NRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYV 393 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSA 291 ++E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ Sbjct: 394 SSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNAN 453 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + +LN Sbjct: 454 KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLN 508 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKK 408 EVL +A ++ + REL+GA ++ S + + + +L L+ T + Sbjct: 509 APPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGDDATPE 568 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I A ++ ++ DL + R R +V RQ+AMYL + +T S P+IG FG RD Sbjct: 569 ITSTAIMSATADYFGLTVEDLCGSSRGRQLVTARQIAMYLCRELTDLSLPKIGALFGGRD 628 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+HA RK+ ++ ++ +V L I Sbjct: 629 HTTVMHADRKIRNLMAERRSIYNQVTELTNRIK 661 Score = 50.0 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 4/81 (4%) Query: 39 FTIVSSRLKNQVGPDVYAS----WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + V +L + + W +R + +++ + L+VP F K ++ R ++ Sbjct: 2 WPRVLEQLLGEGRGQGVETKDEHWIRRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVS 61 Query: 95 KLFQEEHSRIQGVEILVRSVA 115 + E R + I V A Sbjct: 62 ETLSRECGRPIRIAITVDDSA 82 >gi|332523224|ref|ZP_08399476.1| chromosomal replication initiator protein DnaA [Streptococcus porcinus str. Jelinkova 176] gi|332314488|gb|EGJ27473.1| chromosomal replication initiator protein DnaA [Streptococcus porcinus str. Jelinkova 176] Length = 451 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 143/479 (29%), Positives = 242/479 (50%), Gaps = 36/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + V ++Q+ Y + + V N+ + YL Sbjct: 1 MTENETIFWNRVLELAQSQLKQTTYEFFVLDARLIKVADNVATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF E++ + ++++ + + A I + ++ Q Sbjct: 47 DPMKELFWEKNLK----DVILTAGFEIFNAQIAVDYQFEDDLEIMSGAQETSQTFSTQNS 102 Query: 151 SPV--FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 +P+ S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLG Sbjct: 103 NPLPLVKSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N+ + PN RV Y+TAE F+ F IR + LK+ RN+DLLLIDD+ Sbjct: 158 KTHLLNAIGNSVLLDNPNARVKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217 Query: 269 QFLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 Q L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 QSLAKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEQRLVTRFKWGLTVNIT 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PPDFETRVAILTN-----KIQEYSFTFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFK 332 Query: 386 PI--LTAEIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I +T +IA E + +T + + IE+IQ V K Y ++ ++ + +R + +V R Sbjct: 333 QIDKITVDIAAEAIRARKQDTPKMTIIPIEEIQTQVGKFYGVTVKEIKATKRTQDIVLAR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 QVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIVEDESLRIEIETIKNKIK 451 >gi|330718062|ref|ZP_08312662.1| chromosomal replication initiator protein DnaA [Leuconostoc fallax KCTC 3537] Length = 448 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 147/473 (31%), Positives = 230/473 (48%), Gaps = 36/473 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E +++ V ++ ++GP + S+ + L + + VP I+N Sbjct: 5 ITKEELWSQVKAKFYQELGPVSFESFIEPLHPIKLDDSSFVFEVPEEDSADIIENW---- 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 K F + VEI S P ++ I + I I +P + Sbjct: 61 -NKAFAMNFVQ-YAVEITEGSFIKPEIK-------IAQPQAIKQEIPDNPAFRRE----- 106 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S L+ F F +++ GS N A A+++AE NP I VGLGKTHL Sbjct: 107 ---SDLNEHFTFESWVVGSGNEQATAIARAVAEEPG-----TNWNPYLIFGGVGLGKTHL 158 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQF 270 +QAI N K P R+ Y T E F F ++R + K R +DLLLIDD+QF Sbjct: 159 MQAIGNEYAKTHPQARIKYATTEDFTNDFTDSLRAGEGATATFKRDYRTVDLLLIDDIQF 218 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L GK IQ EF + N+L + +Q+V +D+ P + L R+ +R + G+S+ + D Sbjct: 219 LSGKDKIQEEFFNTFNALTKTGRQIVMTSDQLPKNIPDLQQRLTTRFEAGISMDILKPDL 278 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 R +IL+N + E LNI +VL +A V + R L+GAF++ F Sbjct: 279 PTRVAILQN-----KAETDGLNIPRDVLELIAEKVDNNVRSLEGAFHKFEATLRFMNKPA 333 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A ++L L N + + +E IQ++VA +Y + +DL S+ R + +V R +AMYL Sbjct: 334 TKETAQQILGDL-NINQGFDITVERIQQIVADYYMQTIDDLKSSSRKKDLVNARHIAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ +T S P+IGR FG RDH++VLHA K+ + E D +K+ ++ L I Sbjct: 393 TRTLTNESLPDIGRSFGGRDHSSVLHATNKITEKSEADPRMKEMLDALTDEIK 445 >gi|307719922|ref|YP_003891062.1| chromosomal replication initiator protein DnaA [Sulfurimonas autotrophica DSM 16294] gi|306978015|gb|ADN08050.1| chromosomal replication initiator protein DnaA [Sulfurimonas autotrophica DSM 16294] Length = 435 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 118/469 (25%), Positives = 225/469 (47%), Gaps = 42/469 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +I V LK ++ Y + + L + + P + WIKN+Y E I Sbjct: 2 NIGQEVLKALKEEISELEYNRYIRHLSYDIKKSTGDAAIFYAPNALVVNWIKNKYREKIA 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 LF+ ++ ++I +++ K K Sbjct: 62 HLFEIKNGSKVNIKITLKNTIEKRKTK-------------------------KNVEVKQN 96 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F+ G SN+ A A +S++E Y NPLFI+ VGLGKTHL+Q Sbjct: 97 SSLLNPSHSFDNFMVGGSNQFAYAAVKSVSENAGKVY-----NPLFIYGGVGLGKTHLMQ 151 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A N + + V+Y T E F+ F +R+ ++ R D+LLIDD+QFL K Sbjct: 152 AAGN--VFQNEGKVVIYTTVEQFLNDFIRHVRNKTMERFQEKYRKCDVLLIDDIQFLSNK 209 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ EF H +L + KQ++ AD+ P ++ L+ R++SR + G+ + + E + Sbjct: 210 EGIQEEFFHTFEALKGAGKQIILTADKHPKKIGGLEARLQSRFEWGLVADIQPPELETKI 269 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +I+K + I++ + ++E+++ ++A + ++ RE++G ++L + + + Sbjct: 270 AIIKKKCEINK-----VKLSEDIVNYIATVIDSNVREIEGILSKLHAYSQLMHVDIDLDF 324 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 +L +N + +E I ++VAK NI +++ S R + +V R++++Y+ + + Sbjct: 325 TKNVLKDQMNENRA-NLTMETITQIVAKDLNIKPSEIRSKGRSKNIVYARRISIYICREL 383 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T + P++ + FG +DHT + H ++K+ +++ D K +++ L I+ Sbjct: 384 TQNTMPQLAQYFGMKDHTAISHTIKKINSLIKDDEDFKVKIDELTNKIT 432 >gi|15836606|ref|NP_297294.1| chromosomal replication initiation protein [Xylella fastidiosa 9a5c] gi|14194685|sp|Q9PHE3|DNAA_XYLFA RecName: Full=Chromosomal replication initiator protein DnaA gi|9104761|gb|AAF82814.1|AE003855_1 chromosomal replication initiator [Xylella fastidiosa 9a5c] Length = 439 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 153/466 (32%), Positives = 242/466 (51%), Gaps = 32/466 (6%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ RL+ + P+ +W + L+ + V L P F+ ++ RYL + +L Sbjct: 4 WSRCLERLETEFPPEDVHTWLRPLQADQ-RGDSVVLYAPNPFIIELVEERYLGRLRELLS 62 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 S I+ V + + S P T + G+ + + F L Sbjct: 63 -YFSGIREVVLAIGS------------------RPKTTELPVPVDTTGRLSSTVPFNGNL 103 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+ + F F+EG SN++A AA A+ NPL ++ GLGKTHL+ A N Sbjct: 104 DTHYNFDNFVEGRSNQLARAAAWQAAQKPG----DRTHNPLLLYGGTGLGKTHLMFAAGN 159 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + P +V+YL +E F A++D K ID LLIDD+QF GK Q Sbjct: 160 VMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGKDRTQ 219 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + D+E R +I+ Sbjct: 220 EEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIV- 278 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 +++ + I +EV +A+ + ++ R+L+GA N LV R +F +T E + E Sbjct: 279 ----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQET 334 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+AM L+K +T S Sbjct: 335 LRDLLRAQQ-QTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLAMALAKELTEHS 393 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 394 LPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 439 >gi|237802698|ref|YP_002887892.1| chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] gi|231273932|emb|CAX10724.1| Chromosomal replication initiation protein [Chlamydia trachomatis B/Jali20/OT] Length = 455 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 138/466 (29%), Positives = 228/466 (48%), Gaps = 29/466 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + + +K + + +W ++ + L +P F+++++ + Y + + Sbjct: 8 STWEQFVNYIKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIFVQSYLLDNYKKDLCSF 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +E +V I + SP+ T P + + F Sbjct: 68 VPLDAEGNPALEFVV--------------AEIKRSSPLVTPSIAKPATEVSEE-NKDFQL 112 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ Sbjct: 113 KLNGAYRFDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLFIHGGVGLGKTHLLHAV 167 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + NLR+ +T E F+ +R +K+ R++DLLL+DD+QFLQ + Sbjct: 168 GHYVREHHKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQN 227 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + EFC+ +L+ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +I Sbjct: 228 FEEEFCNTFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWGLVAHVGVPDLETRVAI 286 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEIAD 394 L++ + E LNI E+ ++A V + R+L+GA N+L F LT Sbjct: 287 LQH-----KAEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVR 341 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L +K+ +E I + VA + + DL + R + V RQVAMYL+K + Sbjct: 342 DTLKELFRAPSKQKVSVESILKSVATVFQVKIQDLKGSSRAKNVPLARQVAMYLAKTLIT 401 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG + H+TVL+A + +E+ +E D LK ++ L K I Sbjct: 402 DSLVAIGAAFG-KTHSTVLYACKTIEQKIERDALLKNQISLCKNNI 446 >gi|313889534|ref|ZP_07823180.1| chromosomal replication initiator protein DnaA [Streptococcus pseudoporcinus SPIN 20026] gi|313122146|gb|EFR45239.1| chromosomal replication initiator protein DnaA [Streptococcus pseudoporcinus SPIN 20026] Length = 451 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 140/479 (29%), Positives = 240/479 (50%), Gaps = 36/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + ++Q+ Y + + V +N+ + + + + + Sbjct: 1 MTENETIFWNRILELAQSQLKQTTYEFFVLDARLIKVENNVATIYL-DPMKELFWEKNLK 59 Query: 91 ETITKLFQEEHSRIQGVEILVRS--VALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + I E + V+ +P ++ + + S ++P+ Sbjct: 60 DVILTAGFEIFNAQIAVDYQFEDDLEMMPGTQEGSQAFSSQNINPL-------------- 105 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P+ S L+ ++ F FI+G NR A+ A+ ++A Y NPLFI GLG Sbjct: 106 ---PLVKSDLNPKYSFENFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N+ + PN RV Y+TAE F+ F IR + LK+ RN+DLLLIDD+ Sbjct: 158 KTHLLNAIGNSVLLDNPNARVKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217 Query: 269 QFLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 Q L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 QSLAKKTLLGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEQRLVTRFKWGLTVNIT 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PPDFETRVAILTN-----KIQEYSFTFPQDTIEYLAGQFDSNVRDLEGALKDISLVANFK 332 Query: 386 PI--LTAEIADELLS-HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I +T +IA E + +T + + IE+IQ V K Y ++ ++ + +R + +V R Sbjct: 333 QIDRITVDIAAEAIRARKQDTPKMTIIPIEEIQTQVGKFYGVTVKEIKATKRTQDIVLAR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 QVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMIVEDESLRIEIETIKNKIK 451 >gi|225352379|ref|ZP_03743402.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156886|gb|EEG70255.1| hypothetical protein BIFPSEUDO_03996 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 530 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 136/513 (26%), Positives = 235/513 (45%), Gaps = 40/513 (7%) Query: 12 ENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLH 69 + VE E + D LE +++ + L + SW + + + Sbjct: 31 KKSVEKGESVADTTTDP--LEQ-ARGVWSDALALLHQNPALSIRD-KSWLENVFPEGMWG 86 Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV---RSVALPSVEKTASSP 126 + L VP+ + ++N + + + +E + + + A P+VE+ Sbjct: 87 PTIVLCVPSAAAQQTLQNELNQPLLEALREAAEQDIFPAFKIVEKKEPAQPAVEEYPHFS 146 Query: 127 SITKLSPINTNISKSPIILGKQTISP----------VFGSPLDSRFVFSTFIEGSSNRVA 176 P+++ + + + L+ F TF+ G SNR A Sbjct: 147 PAPHAEETTQGQLPIPVVMPPERHNNFQRGQNRPLLDPKTHLNKNATFDTFVPGDSNRFA 206 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 T A ++AE H NPL I+ GLGKTHLL AI N ++ + P L+V Y+T+E Sbjct: 207 RTVALAVAEGSGHD-----FNPLCIYGGSGLGKTHLLNAIGNYALVKDPTLKVRYVTSEE 261 Query: 237 FMWRFASAIRD-----NCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 F F A+ D R +D+LLIDD+QFL GK +F H N+L + Sbjct: 262 FTNEFIEALGDTNQNSGQIKEFNRRYREVDVLLIDDIQFLSGKDATLEQFFHTFNTLHQA 321 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 K++V A+D PP +L+ + R+ SR + G++V + D E R +IL+ Sbjct: 322 NKRIVIASDVPPKDLQGFNERLISRFESGLTVDVKPPDLETRIAILRMIA-------HGT 374 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKM 409 N+ ++VL +A T + REL+GA N++ S +T +A++ L +T ++ Sbjct: 375 NVQDDVLNLIAERFTENIRELEGALNRVTAMASLSGQPVTRALAEQTLQDFFSTDV--EI 432 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 + DI VAK++ I+ +D++ R + + RQ+AMYL + +T S +IG+ FG +DH Sbjct: 433 KPTDIITQVAKYFYITFDDIVGRSRTKKIALARQIAMYLVRELTSMSLNDIGQVFGGKDH 492 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 TTV+HA ++ ++ + V L + + Sbjct: 493 TTVMHAYTRISDEMQEKQEIYNYVTELTLQLKQ 525 >gi|294813740|ref|ZP_06772383.1| Chromosomal replication initiator protein dnaA [Streptomyces clavuligerus ATCC 27064] gi|294326339|gb|EFG07982.1| Chromosomal replication initiator protein dnaA [Streptomyces clavuligerus ATCC 27064] Length = 597 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 117/388 (30%), Positives = 194/388 (50%), Gaps = 14/388 (3%) Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 + +P+ T + + L+ +++F TF+ G+SNR Sbjct: 218 PDRRELPAPAAPHRGTGGTGPGPLGSPSPAASGPGEPHARLNPKYLFDTFVIGASNRF-- 275 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 A V NPLFI+ GLGKTHLL AI + + P RV Y+++E F Sbjct: 276 ---AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEF 332 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVA 296 F ++IRD + R++D+LL+DD+QFL K Q EF H N+L ++ KQ+V Sbjct: 333 TNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVL 392 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 ++DRPP +L +L+ R+R+R + G++ + + E R +IL+ + +LN EV Sbjct: 393 SSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAILRK-----KAVQEQLNAPPEV 447 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKKMRIED 413 L +A ++ + REL+GA ++ S + + + +L L+ ++ Sbjct: 448 LEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDSAPEITAGA 507 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I A ++ ++ DL + R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+ Sbjct: 508 IMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVM 567 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ ++ +V L I Sbjct: 568 HADRKIRALMAERRSIYNQVTELTNRIK 595 Score = 56.2 bits (134), Expect = 1e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 43/119 (36%), Gaps = 7/119 (5%) Query: 34 NCESIFTIVSSRLKNQ----VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V L + + P W +R + +++ LSVP + K ++ R Sbjct: 7 DLAAVWPRVLEHLLAEGRAGIEPKD-KQWIERCRPLALVAGTALLSVPNEWGKRVLEGRL 65 Query: 90 LETITKLFQEEHSRIQGVEILVRSVA--LPSVEKTASSPSITKLSPINTNISKSPIILG 146 I++ E + I V A P+ ++TA PS P G Sbjct: 66 APLISETLSRECGGPIRIAITVDDSAAGAPAPQETAPQPSAYPQHDEAPGYPPQPDPYG 124 >gi|297625199|ref|YP_003686962.1| Chromosomal replication initiator protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920964|emb|CBL55501.1| Chromosomal replication initiator protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 488 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 136/486 (27%), Positives = 235/486 (48%), Gaps = 32/486 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + + V S + ++ + K +V + V ++VP ++ + I+++ +TI Sbjct: 13 DLPDAWKHVLSDFGGRD-----KAYLRGAKALTVHESTVMIAVPNDYTRENIESKLRDTI 67 Query: 94 TKLFQEEHSRIQGVEILVRSVA----LPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + R + I V P + + + I + +P + +T Sbjct: 68 ESRLSDVYHREMRLAITVEPSLELDLRPPERDEEAEREVEPVQFIPRQDAPAPSLRAVET 127 Query: 150 ISP----------VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 P + L+ R+ F F+ GSSNR A AA ++AE Y NPL Sbjct: 128 PQPASAESADDTAIADGRLNPRYTFDNFVIGSSNRFAHAAAVAVAEAPGKAY-----NPL 182 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 I+ GLGKTHLL A+ + N+RV Y++ E F +A+ +N + R+ Sbjct: 183 MIYGESGLGKTHLLHALGHYVRNYYSNVRVKYVSTEEMTNEFINAVGENRTAEFRRKYRD 242 Query: 260 IDLLLIDDM-QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 +L+ D QFL+GK Q EF + N+L ++ +Q+V +DRPP LE L+ R+RSR + Sbjct: 243 DVDVLLIDDIQFLEGKTQTQEEFFYTFNALHNAQRQIVLTSDRPPKALEQLESRLRSRFE 302 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ + D E R +IL+ + A L++ VL +A + T+ REL+GA + Sbjct: 303 WGLITDIQPPDPETRIAILQRKAAAD-----NLSVPPGVLEFIASKIQTNIRELEGALIR 357 Query: 378 LVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 + S ++ +A+++L L+ G + I A ++ +S +DL+ R + Sbjct: 358 VTAFASLNREEVSLAVAEQVLRDLIPDGAEADVTAPTIIHETANYFGVSVDDLIGPSRNQ 417 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 T+V RQ+AMYL + +T S P+IG+ FG +DHTTV+HA RK+ K++ ++ +V L Sbjct: 418 TLVMARQIAMYLCRELTDLSLPKIGQEFGGKDHTTVMHADRKIRKLMSERRSVYNQVTEL 477 Query: 497 KRLISE 502 I + Sbjct: 478 TNRIKQ 483 >gi|326442161|ref|ZP_08216895.1| chromosomal replication initiation protein [Streptomyces clavuligerus ATCC 27064] Length = 587 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 117/388 (30%), Positives = 194/388 (50%), Gaps = 14/388 (3%) Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 + +P+ T + + L+ +++F TF+ G+SNR Sbjct: 208 PDRRELPAPAAPHRGTGGTGPGPLGSPSPAASGPGEPHARLNPKYLFDTFVIGASNRF-- 265 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 A V NPLFI+ GLGKTHLL AI + + P RV Y+++E F Sbjct: 266 ---AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEF 322 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVA 296 F ++IRD + R++D+LL+DD+QFL K Q EF H N+L ++ KQ+V Sbjct: 323 TNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVL 382 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 ++DRPP +L +L+ R+R+R + G++ + + E R +IL+ + +LN EV Sbjct: 383 SSDRPPKQLMTLEDRLRNRFEWGLTTDVQPPELETRIAILRK-----KAVQEQLNAPPEV 437 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKKMRIED 413 L +A ++ + REL+GA ++ S + + + +L L+ ++ Sbjct: 438 LEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDSAPEITAGA 497 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 I A ++ ++ DL + R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+ Sbjct: 498 IMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVM 557 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLIS 501 HA RK+ ++ ++ +V L I Sbjct: 558 HADRKIRALMAERRSIYNQVTELTNRIK 585 Score = 53.5 bits (127), Expect = 8e-05, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 40/114 (35%), Gaps = 7/114 (6%) Query: 39 FTIVSSRLKNQ----VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + V L + + P W +R + +++ LSVP + K ++ R I+ Sbjct: 2 WPRVLEHLLAEGRAGIEPKD-KQWIERCRPLALVAGTALLSVPNEWGKRVLEGRLAPLIS 60 Query: 95 KLFQEEHSRIQGVEILVRSVA--LPSVEKTASSPSITKLSPINTNISKSPIILG 146 + E + I V A P+ ++TA PS P G Sbjct: 61 ETLSRECGGPIRIAITVDDSAAGAPAPQETAPQPSAYPQHDEAPGYPPQPDPYG 114 >gi|297748405|gb|ADI50951.1| DnaA [Chlamydia trachomatis D-EC] gi|297749285|gb|ADI51963.1| DnaA [Chlamydia trachomatis D-LC] Length = 486 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 141/482 (29%), Positives = 233/482 (48%), Gaps = 29/482 (6%) Query: 21 TPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 + D + L N S + + +K + + +W ++ + L +P F Sbjct: 23 NSSSDKENAMLTCNDCSTWEQFVNYIKTRCSKTAFENWIAPIQVLEESSEKIRLEIPNIF 82 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 +++++ + Y + + + +E +V I + SP+ T Sbjct: 83 VQSYLLDNYKKDLCSFVPLDAEGNPALEFVV--------------AEIKRSSPLVTPSIA 128 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 P + + F L+ + F FIEG SN+ +AA IA Y NPLF Sbjct: 129 KPATEVSEE-NKDFQLKLNGAYRFDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLF 182 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 IH VGLGKTHLL A+ + + NLR+ +T E F+ +R +K+ R++ Sbjct: 183 IHGGVGLGKTHLLHAVGHYVREHHKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSL 242 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLLL+DD+QFLQ + + EFC+ +L+ +KQ+V +D+PP +L+ L RI +R++ G Sbjct: 243 DLLLVDDIQFLQNRQNFEEEFCNTFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWG 301 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + +G+ D E R +IL++ + E LNI E+ ++A V + R+L+GA N+L Sbjct: 302 LVAHVGVPDLETRVAILQH-----KAEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLT 356 Query: 380 FRH-SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 F LT + L L +K+ +E I + VA + + DL + R + V Sbjct: 357 AYCLLFNKPLTETTVRDTLKELFRAPSKQKVSVESILKSVATVFQVKIQDLKGSSRAKNV 416 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RQVAMYL+K + S IG FG + H+TVL+A + +E+ +E D LK ++ L K Sbjct: 417 PLARQVAMYLAKTLITDSLVAIGAAFG-KTHSTVLYACKTIEQKIEKDALLKNQISLCKN 475 Query: 499 LI 500 I Sbjct: 476 NI 477 >gi|171741734|ref|ZP_02917541.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC 27678] gi|306823996|ref|ZP_07457370.1| DNA-directed DNA replication initiator protein [Bifidobacterium dentium ATCC 27679] gi|309801964|ref|ZP_07696078.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium JCVIHMP022] gi|171277348|gb|EDT45009.1| hypothetical protein BIFDEN_00825 [Bifidobacterium dentium ATCC 27678] gi|304552994|gb|EFM40907.1| DNA-directed DNA replication initiator protein [Bifidobacterium dentium ATCC 27679] gi|308221412|gb|EFO77710.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium JCVIHMP022] Length = 500 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 132/494 (26%), Positives = 229/494 (46%), Gaps = 42/494 (8%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ + L+ + W + + + + L VP+ + ++ + + + Sbjct: 15 VWSDALALLRQNPKLSARD-KGWLENVVPEGMWGPTIVLCVPSAATQQALQTELNQPLME 73 Query: 96 LFQEEHSRIQGVEILV---RSVALPSVE---------KTASSPSITKLSPINTNISKSPI 143 ++ + + + P +E +T S PI ++ + P Sbjct: 74 ALKDSAEQDIFPAFKIVPMQQTVEPDIEEYPHFDRKPRTQREESTQGQLPIPASMPEQPF 133 Query: 144 ILGKQ------TISPVFG--SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 +Q P+ + L+ F TF+ G SNR A T A ++AE H Sbjct: 134 RPTEQGTFTSGQNRPLLDPQTHLNKNATFDTFVPGDSNRFARTVALAVAEGSGHD----- 188 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-----NCA 250 NPL I+ GLGKTHLL AI N ++ + PNL+V Y+T+E F F A+ D Sbjct: 189 FNPLCIYGGSGLGKTHLLNAIGNYALVKDPNLKVRYVTSEEFTNEFIEALGDTNQNSGQI 248 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 R +D+LLIDD+QFL GK +F H N+L + K++V A+D PP +L+ Sbjct: 249 KEFNRRYREVDVLLIDDIQFLSGKEATLEQFFHTFNTLHQANKRIVIASDVPPKDLKGFQ 308 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR + G++V + D E R +IL+ ++ NI +VL +A T + R Sbjct: 309 ARLISRFESGLTVDVKPPDLETRIAILRMMATMNGS-----NIPNDVLNLIAERFTENIR 363 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA N++ S +T +A+ L + +++ DI VAK+++++ +D Sbjct: 364 ELEGALNRVTAMASLSNQPVTRALAEHTLQDFFTSDV--EIKPADIISQVAKYFHLTFDD 421 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 ++ R + + RQVAMYL + +T S +IG FG +DHTTV+HA ++ ++ Sbjct: 422 IVGRSRTKNIALARQVAMYLVRELTSMSLNDIGLVFGGKDHTTVMHAYTRISDEMQEKQE 481 Query: 489 LKKEVELLKRLISE 502 + V L + + Sbjct: 482 IYNYVMELTVRLKQ 495 >gi|116510844|ref|YP_808060.1| chromosomal replication initiation protein [Lactococcus lactis subsp. cremoris SK11] gi|125622883|ref|YP_001031366.1| chromosomal replication initiation protein [Lactococcus lactis subsp. cremoris MG1363] gi|123320723|sp|Q033I4|DNAA_LACLS RecName: Full=Chromosomal replication initiator protein DnaA gi|166214677|sp|A2RH74|DNAA_LACLM RecName: Full=Chromosomal replication initiator protein DnaA gi|116106498|gb|ABJ71638.1| ATPase for DNA replication initiation [Lactococcus lactis subsp. cremoris SK11] gi|124491691|emb|CAL96609.1| replication initiation protein DnaA [Lactococcus lactis subsp. cremoris MG1363] gi|300069621|gb|ADJ59021.1| chromosomal replication initiation protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 454 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 140/469 (29%), Positives = 243/469 (51%), Gaps = 28/469 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + V+ + +G Y + + + SV + ++ + + K + K + + IT Sbjct: 8 QKFWARVTELARQSIGKQAYDFFIEPAQLMSVEQDTANILLDSGMKKDYWKKQ-SDLITT 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E R+ E+ + L +E + P++ SP++ Sbjct: 67 AGFEVFGRMIDYEL-YANDELTDIELRRLNNQSPVDEPLSVAKPTSPLV----------- 114 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 S L+ ++ F F++G NR L AA ++A+ Y NPLFI+ GLGKTHL+ A Sbjct: 115 SGLNEKYNFENFVQGPGNRWTLAAAIAVADKPGDTY-----NPLFIYGGAGLGKTHLMHA 169 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N + P R+ Y+++E F+ + +A R N + +++ RN+DLLL+DD+QF K Sbjct: 170 IGNQILTDNPTARIKYVSSENFVNDYVNATRKNQMESFENTYRNLDLLLLDDVQFFSDKE 229 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 ++EF + N+L D Q+V +DR P EL +L+ R+ SR G++ + DYE R + Sbjct: 230 GTKNEFFNTFNALYDKGSQIVLTSDRIPQELNNLEDRLVSRFSWGLTTDITAPDYETRMA 289 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL--VFRHSFAPILTAEI 392 IL + + E L E L ++A + ++ REL+GA N++ V R + I+ E Sbjct: 290 IL-----LIKSESSHLEFPSETLSYIAGQIDSNVRELEGALNRVEFVARANGISIVDIET 344 Query: 393 ADELLSHLVNTGETK--KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A + L L N + + I+ IQ VA +Y+IS +DL+ +R + + PRQ+AMYL + Sbjct: 345 ASQALRSLKNATQQSLSNLTIKKIQDEVANYYHISFSDLVGPKRPKEIAFPRQIAMYLVR 404 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 + S P IG FG RDHTTV++A +++ ++ D+ ++K+++ +KR Sbjct: 405 ELLGTSLPAIGTAFGGRDHTTVMYAYKQISDKMKNDMDVQKDIDSIKRK 453 >gi|160932427|ref|ZP_02079817.1| hypothetical protein CLOLEP_01262 [Clostridium leptum DSM 753] gi|156868386|gb|EDO61758.1| hypothetical protein CLOLEP_01262 [Clostridium leptum DSM 753] Length = 438 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 129/478 (26%), Positives = 223/478 (46%), Gaps = 47/478 (9%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNR 88 +E E+ + ++ K + Y +W R++ L VP F + + Sbjct: 1 MESFHEA-WDLICDYCKAHITDVAYKTWISRIEPVKLDFDAGDAILMVPNEFHRQTLNRC 59 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y+ + E + + P G++ Sbjct: 60 YMPLLNSAVHEIFGSGINIIFTI------------------------------PNEAGEK 89 Query: 149 TISPVFGSPLDSRF--VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 +P +DS + F T+I GSSN+ A A+ ++A + Y NPLFI+ + G Sbjct: 90 KAAPNDNLAIDSEYEFTFDTYIVGSSNKFAHAASLAVAANPAGAY-----NPLFIYGNSG 144 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL AI N + P + +Y+ + F AI+ R D+LL+D Sbjct: 145 LGKTHLLYAICNDLKRSHPEMTTLYIKGDDFTNELIDAIQHGTTSTFHQKYRKTDVLLVD 204 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H NSL ++ KQ+V +DRPP E+++L+ R+R+R + G+ + Sbjct: 205 DIQFIAGKDSTQEEFFHTFNSLYEAKKQIVLTSDRPPKEIQTLEDRLRTRFEWGLIADIQ 264 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +I+K + E L + +V ++A + T+ R+L+GA ++ Sbjct: 265 PPDFETRIAIIKR-----KAEALDLELPGDVCEYIATRLKTNIRQLEGAVKKMKANWLLN 319 Query: 386 PI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 T A +S ++N + + +E I V + + +S +D+ S++R + RQ+ Sbjct: 320 GDAPTMANAQTAISDILNNDQPPPLTVEKIIEEVGRTFGVSPDDIRSSKRSANISNARQI 379 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 A+Y+ + +T S IG FG RDH+TV++AV++VEK ++ D K VE + + I + Sbjct: 380 AVYVVREITQLSMTTIGEEFGGRDHSTVVYAVQQVEKNMKKDSKTKAMVEDIIKNIRD 437 >gi|325860078|ref|ZP_08173204.1| chromosomal replication initiator protein DnaA [Prevotella denticola CRIS 18C-A] gi|325482363|gb|EGC85370.1| chromosomal replication initiator protein DnaA [Prevotella denticola CRIS 18C-A] Length = 468 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 116/471 (24%), Positives = 222/471 (47%), Gaps = 14/471 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + V+ ++++ +K V + +WF+ + S L VP+ F+ +++ Sbjct: 1 MNVSPKNLWDNCLQLIKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEEH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y++ + K+ + + V + + ++S + Sbjct: 61 YVDLLRKVLTRVFGQGVQLTYRVMVDQEHHLSQDLQQDDAEEISSQRPTTRGNQSPTVLD 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T+ S LD F+ ++EG SN++ + SIAE + T + NP+FI+ G G Sbjct: 121 TVPQDIDSQLDPHKSFNNYVEGDSNKLPRSIGLSIAEHPN----TTQFNPMFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + P RV+Y++A F ++ ++R N + + + ID+L++DD+ Sbjct: 177 KTHLVNAIGLRVKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDI 236 Query: 269 QFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L Sbjct: 237 QEWATATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + ++ IL N++ L I E+V+ ++ T S R+L G N L+ + Sbjct: 297 NVQLCIDILHNKIKRD-----GLCIPEDVVRFISETANGSVRDLQGVINSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + I+DI V HYN++ + S R + +V RQV+M Sbjct: 352 NIDMRLAERVIKRAVKID-DEPLTIDDILDKVCSHYNVTTTAVNSRSRKKDIVMARQVSM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 Y+++ T IG+ G+RDH+TV+H+ K+E L+ D E+ ++ Sbjct: 411 YMAQKYTKMPASRIGKLVGNRDHSTVIHSCSKIEDRLKIDKGFFAEMASIE 461 >gi|212697388|ref|ZP_03305516.1| hypothetical protein ANHYDRO_01958 [Anaerococcus hydrogenalis DSM 7454] gi|212675580|gb|EEB35187.1| hypothetical protein ANHYDRO_01958 [Anaerococcus hydrogenalis DSM 7454] Length = 459 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 240/475 (50%), Gaps = 24/475 (5%) Query: 33 VNCESIFTIVSSRLKNQVGP-DVYASWFQRLKFHSVLHNIVHLSVP---TNFLKAWIKNR 88 +N E I + ++K V Y +W LK + N ++L +P T F+ I Sbjct: 2 MNLEYITNELKEKMKMNVPDLQQYETWIGILKPLNKYDNTIYLEIPKNDTKFIFDQIWVP 61 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 L+ I + S VEI+ + T N+++ P L Sbjct: 62 QLQAILNDINKRESTSYKVEIVAKDGPNYEDILTLGRNVDDNGQLRLNNVNRYPKPL--- 118 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L+ +F F++G SN++AL A+QS+AE ++ + NPLFI+ S GLG Sbjct: 119 ---------LEKNNIFENFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIYGSSGLG 169 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAIA+ +K++ + V+YL++E F SA+R+N + R++D+LLIDD+ Sbjct: 170 KTHLMQAIAHEILKKRDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDMLLIDDI 229 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ K Q EF H L + KQ+V ++DRPP E++ L+ R+ SR G+ V + Sbjct: 230 QFIANKTGTQEEFFHTFEDLYNQGKQIVISSDRPPKEIKHLEERLVSRFGWGIIVDISKP 289 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D+E R +IL+ ++++ ++ ++L ++A + T+ R+L+GA + Sbjct: 290 DFETRVAILQK-----KQDELGAVVDYKILEYIAENIETNIRDLEGALATSIACAKSNNR 344 Query: 388 LTAEIADELLSHLVNTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + D L + KK + EDIQ+ V+ Y++ DL R + +V PRQ+AM Sbjct: 345 SYVSLEDARLGVSSRVHKDKKQISTEDIQKKVSDRYHVKLTDLRGKSRKKEIVMPRQIAM 404 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL + + S + F +RDHTT++H K+E M+E D ++E+E L + I Sbjct: 405 YLCRHLLSISLVSLANEF-NRDHTTIMHGHDKIEAMIEEDQDFRQEIEELIKEIK 458 >gi|283454960|ref|YP_003359524.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium Bd1] gi|283101594|gb|ADB08700.1| chromosomal replication initiator protein DnaA [Bifidobacterium dentium Bd1] Length = 500 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 132/494 (26%), Positives = 229/494 (46%), Gaps = 42/494 (8%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ + L+ + W + + + + L VP+ + ++ + + + Sbjct: 15 VWSDALALLRQNPKLSARD-KGWLENVVPEGMWGPTIVLCVPSAATQQALQTELNQPLME 73 Query: 96 LFQEEHSRIQGVEILV---RSVALPSVE---------KTASSPSITKLSPINTNISKSPI 143 ++ + + + P +E +T S PI ++ + P Sbjct: 74 ALKDSAEQDIFPAFKIVPMQQTVEPDIEEYPHFDRKPRTQREESTQGQLPIPASMPEQPF 133 Query: 144 ILGKQ------TISPVFG--SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 +Q P+ + L+ F TF+ G SNR A T A ++AE H Sbjct: 134 RPTEQGTFTSGQNRPLLDPQTHLNKNATFDTFVPGDSNRFARTVALAVAEGSGHD----- 188 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-----NCA 250 NPL I+ GLGKTHLL AI N ++ + PNL+V Y+T+E F F A+ D Sbjct: 189 FNPLCIYGGSGLGKTHLLNAIGNYALVKDPNLKVRYVTSEEFTNEFIEALGDTNQNSGQI 248 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 R +D+LLIDD+QFL GK +F H N+L + K++V A+D PP +L+ Sbjct: 249 KEFNRRYREVDVLLIDDIQFLSGKEATLEQFFHTFNTLHQANKRIVIASDVPPKDLKGFQ 308 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 R+ SR + G++V + D E R +IL+ ++ NI +VL +A T + R Sbjct: 309 ARLISRFESGLTVDVKPPDLETRIAILRMMATMNGS-----NIPNDVLNLIAERFTENIR 363 Query: 370 ELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA N++ S +T +A+ L + +++ DI VAK+++++ +D Sbjct: 364 ELEGALNRVTAMASLSNQPVTRALAEHTLQDFFTSDV--EIKPADIISQVAKYFHLTFDD 421 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 ++ R + + RQVAMYL + +T S +IG FG +DHTTV+HA ++ ++ Sbjct: 422 IVGRSRTKNIALARQVAMYLVRELTSMSLNDIGLVFGGKDHTTVMHAYTRISDEMQEKQE 481 Query: 489 LKKEVELLKRLISE 502 + V L + + Sbjct: 482 IYNYVMELTVRLKQ 495 >gi|307941558|ref|ZP_07656913.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] gi|307775166|gb|EFO34372.1| chromosomal replication initiator protein DnaA [Roseibium sp. TrichSKD4] Length = 487 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 197/480 (41%), Positives = 291/480 (60%), Gaps = 26/480 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V ++L+ ++G DV+++WF R+ IV LSVPT FLK WI+ Y + I L++ Sbjct: 12 WESVKTQLRAELGEDVFSNWFGRVMLEEEGDKIVRLSVPTRFLKNWIQLHYKDRIVSLWK 71 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKS----------------- 141 +E I +E+ VR P T S +N SK Sbjct: 72 KEGESIDRIELTVRGAMRPRAVGTMDPSRQLSASNLNYRASKPNVGRHAIPALTKALRGD 131 Query: 142 -PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + + + G+ ++ F TF+EG+SN +A +A + +A S L+ LF Sbjct: 132 MASGMSDLPLQFLQGAAVNPNQTFDTFVEGNSNGLAFSAVRQMANDQS-----STLDLLF 186 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 IH+ +G+GK+HLL A A+ R +V+Y+TAEYFM+ A+R +K +L ++ Sbjct: 187 IHSGIGIGKSHLLHA--AAAEARAAGRKVLYVTAEYFMYHLVPALRTRSFTMVKQTLDSV 244 Query: 261 DLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 DLLLIDD+Q L GK Q EFC L LL+S KQV+ AADRPP +L +LD +R R GV Sbjct: 245 DLLLIDDIQLLHGKQHQQEFCQTLRMLLESPKQVIVAADRPPEQLATLDDTLRKRFADGV 304 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 + DY +R +I++ R++I+++ P +I E V+ H+AR VT+S R+L+GA N+L+ Sbjct: 305 VAGIQHPDYLLRKNIVEKRVSIARRHYPSFDIPEAVVDHIARNVTSSARDLEGAVNRLIA 364 Query: 381 RHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + +T E+AD+ L LV E + +RIEDIQ +V KHY++++NDLLS+ R T+V Sbjct: 365 HNQLTNQPITQELADKTLHDLVKPTEVRSVRIEDIQHVVCKHYSVTKNDLLSSCRAHTIV 424 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 +PRQ+AMYL+K+MT RS PEIGRRFG+RDHTTVLHAVRK++KM+++D L E++LLKRL Sbjct: 425 KPRQIAMYLAKVMTGRSLPEIGRRFGNRDHTTVLHAVRKIDKMVKSDAGLAAEIDLLKRL 484 >gi|325846368|ref|ZP_08169337.1| chromosomal replication initiator protein DnaA [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481552|gb|EGC84592.1| chromosomal replication initiator protein DnaA [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 458 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 144/475 (30%), Positives = 240/475 (50%), Gaps = 24/475 (5%) Query: 33 VNCESIFTIVSSRLKNQVGP-DVYASWFQRLKFHSVLHNIVHLSVP---TNFLKAWIKNR 88 +N E I + ++K V Y +W LK + N ++L +P T F+ I Sbjct: 1 MNLEYITNELKEKMKMNVPDLQQYETWIGILKPLNKYDNTIYLEIPKNDTKFIFDQIWVP 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 L+ I + S VEI+ + T N+++ P L Sbjct: 61 QLQAILNDINKRESTSYKVEIVAKDGPNYEDILTLGRNVDDNGQLRLNNVNRYPKPL--- 117 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 L+ +F F++G SN++AL A+QS+AE ++ + NPLFI+ S GLG Sbjct: 118 ---------LEKNNIFENFVQGKSNQLALAASQSVAENMANYKVSRVYNPLFIYGSSGLG 168 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAIA+ +K++ + V+YL++E F SA+R+N + R++D+LLIDD+ Sbjct: 169 KTHLMQAIAHEILKKRDDCYVMYLSSEKFTNEMISAVRNNTNEEFRKKYRSVDMLLIDDI 228 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ K Q EF H L + KQ+V ++DRPP E++ L+ R+ SR G+ V + Sbjct: 229 QFIANKTGTQEEFFHTFEDLYNQGKQIVISSDRPPKEIKHLEERLVSRFGWGIIVDISKP 288 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D+E R +IL+ ++++ ++ ++L ++A + T+ R+L+GA + Sbjct: 289 DFETRVAILQK-----KQDELGAVVDYKILEYIAENIETNIRDLEGALATSIACAKSNNR 343 Query: 388 LTAEIADELLSHLVNTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + D L + KK + EDIQ+ V+ Y++ DL R + +V PRQ+AM Sbjct: 344 SYVSLEDARLGVSSRVHKDKKQISAEDIQKKVSDRYHVKLTDLRGKSRKKEIVMPRQIAM 403 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL + + S + F +RDHTT++H K+E M+E D ++E+E L + I Sbjct: 404 YLCRYLLSISLVSLANEF-NRDHTTIMHGHDKIEAMIEEDQDFRQEIEELIKEIK 457 >gi|325528073|gb|EGD05285.1| chromosomal replication initiation protein [Burkholderia sp. TJI49] Length = 365 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 123/349 (35%), Positives = 197/349 (56%), Gaps = 13/349 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKTHL+ Sbjct: 27 RSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIH 81 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 82 AIGNQLLLDKAGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGK 141 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR Sbjct: 142 SRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRV 201 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + + +N++E+V VA+ + ++ REL+GA +++ F ++ E+ Sbjct: 202 AIL-----MRKAQSEGVNLSEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREISIEL 256 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ T + +++ +E+IQ+ VA YNI D+ S +R + RPRQ+AMYL+K + Sbjct: 257 TKEALKDLL-TVQNRQISVENIQKTVADFYNIKVADMYSKKRPANIARPRQIAMYLAKEL 315 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 316 TQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 364 >gi|260593160|ref|ZP_05858618.1| DNA replication initiator protein, ATPase [Prevotella veroralis F0319] gi|260534868|gb|EEX17485.1| DNA replication initiator protein, ATPase [Prevotella veroralis F0319] Length = 468 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 118/472 (25%), Positives = 224/472 (47%), Gaps = 14/472 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + VN + ++ +K V Y +WF+ + S L VP+ F+ +++ Sbjct: 1 MNVNPKQLWDQCLQLIKENVTEQQYDTWFRPIVLQSYQPASKTLLVQVPSQFVYEYLEEH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y+ + K + + V + + ++ ++S + Sbjct: 61 YVPLLRKTLIRVFGQGVQLSYRVMVDQEHHLSQDLQPDTVEEISSQRPTARGNQSPTILD 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S LD F+ +IEG SN++ + SIAE S T + NP+FI+ G G Sbjct: 121 AVPQDLDSQLDPHKSFTNYIEGDSNKLPRSIGLSIAEHPS----TTQFNPMFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + P RV+Y++A F ++ ++R N + + + ID+L++DD+ Sbjct: 177 KTHLVNAIGLKVKQLYPEKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDI 236 Query: 269 Q-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q ++ Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L Sbjct: 237 QEWITATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + ++ IL N++ L+I E+V+ +A T S R+L G N L+ + Sbjct: 297 NVQLCVDILHNKIKRD-----GLSIPEDVIKFIAETANGSVRDLQGVINSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + I+DI V H++++ + + S R + +V RQV+M Sbjct: 352 NVDMRLAERVIKRAVKID-DEPLTIDDILDKVCTHFSVTTSAVNSRSRKKDIVMARQVSM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Y+++ T IG+ G+RDH+TV+H+ K+E L+ D E+ ++ Sbjct: 411 YMAQKYTKMPASRIGKLVGNRDHSTVIHSCSKIEDRLKVDKGFYAELASIEN 462 >gi|15835165|ref|NP_296924.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270285337|ref|ZP_06194731.1| chromosomal replication initiation protein [Chlamydia muridarum Nigg] gi|270289353|ref|ZP_06195655.1| chromosomal replication initiation protein [Chlamydia muridarum Weiss] gi|301336734|ref|ZP_07224936.1| chromosomal replication initiation protein [Chlamydia muridarum MopnTet14] gi|14194689|sp|Q9PKB9|DNAA2_CHLMU RecName: Full=Chromosomal replication initiator protein DnaA 2 gi|7190587|gb|AAF39386.1| chromosomal replication initiator protein DnaA [Chlamydia muridarum Nigg] Length = 455 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 138/466 (29%), Positives = 232/466 (49%), Gaps = 29/466 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 S + + +K + + +W ++ + L +P F+++++ + Y + + Sbjct: 8 STWEQFVNYIKTRCSKTAFENWIAPIQVLEESREKIRLEIPNIFVQSYLLDNYKKDLCSF 67 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + +E +V + S + AS ++K + + ++ + F Sbjct: 68 VPLDAEGNPALEFVVSEIKRSSPQIAAS-------------VTKPAVEVSEE--NKDFQL 112 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+ + F FIEG SN+ +AA IA Y NPLFIH VGLGKTHLL A+ Sbjct: 113 KLNGAYRFDNFIEGPSNQFVKSAALGIAARPGRSY-----NPLFIHGGVGLGKTHLLHAV 167 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + NLR+ +T E F+ +R +K+ R++DLLL+DD+QFLQ + Sbjct: 168 GHYVREHHKNLRIHCITTEAFINDLVHHLRVKSIDKMKNFYRSLDLLLVDDIQFLQNRQN 227 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 + EFC+ +L+ +KQ+V +D+PP +L+ L RI +R++ G+ +G+ D E R +I Sbjct: 228 FEEEFCNTFETLIHLSKQIVVTSDKPPGQLK-LSERIIARMEWGLVAHVGVPDLETRVAI 286 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEIAD 394 L++ + E LNI E+ ++A V + R+L+GA N+L F LT Sbjct: 287 LQH-----KAEQKGLNIPNEIAFYIADHVYGNVRQLEGAINKLTAYCLLFNKPLTETTVR 341 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + L L T +K+ +E I + VA + + DL R + V RQVAMYL+K + Sbjct: 342 DTLKELFRTPSKQKVSVESILKSVATVFQVKIQDLKGTSRAKNVPLARQVAMYLAKTLIT 401 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S IG FG + H+TVL+A + +E+ +E D LK ++ L K I Sbjct: 402 DSLVAIGAAFG-KTHSTVLYACKTIEQKIEKDALLKNQISLCKNNI 446 >gi|124516518|gb|EAY58026.1| Chromosomal replication initiator protein (DnaA) [Leptospirillum rubarum] gi|206603405|gb|EDZ39885.1| Chromosomal replication initiator protein (DnaA) ORIGIN [Leptospirillum sp. Group II '5-way CG'] Length = 465 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 134/482 (27%), Positives = 251/482 (52%), Gaps = 34/482 (7%) Query: 35 CESIFTIVSSRL-----------KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKA 83 +S++ V R ++ + + L V ++F++ Sbjct: 2 SQSLWNRVLERFCEFGSEPGALERDGILDL-----LKGAVLEGGKDGYSVL-VGSSFIQR 55 Query: 84 WIKNRYLETITKLFQEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 ++NRY + + F+E + ++LV+ +P ++ S + P Sbjct: 56 LVQNRYYKDLLTAFREVTQNPEISFDVLVQPENVPRKKRKVVRNSGPEGGLSPGKPVPLP 115 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 + + SP + S L+ R+ F ++ G N+ A AA +IA S Y NP ++ Sbjct: 116 LGEDR---SPSWNSNLNPRYFFENYVVGVCNQFAHAAAFAIANNPSKAY-----NPFYLF 167 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 SVGLGKTHL+ AI N I P+L+V+Y+T E F+ SAI+ N ++ R ID+ Sbjct: 168 GSVGLGKTHLVSAIGNCMIALYPSLKVLYITTESFLNEMVSAIKFNKMNEFRERYRKIDV 227 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 L++DD+QFL GK Q E + N+L ++ KQ++ ++D P+++ +L+ R++SR G+ Sbjct: 228 LIMDDVQFLSGKERTQEELFYTFNALYENGKQIILSSDCMPNDIPTLEGRLKSRFGWGLI 287 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + + D+E + ILK ++A + +++ +V+ +A ++ ++ REL+GA +L Sbjct: 288 ADIQIPDFETKVEILKGKMAQEK-----VDLPMDVVYFLANSIKSNIRELEGAMIRLGAY 342 Query: 382 -HSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + +T E+A LLS L+ + + ++ I + VA ++ + ++ S +R +T+V Sbjct: 343 GNLMGKPITIEVARNLLSDLMPLSR-ESISVDRILQEVADYFKVLPKEIRSKKRHKTLVT 401 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 R VA+YL + +T +S+PEIGR G RDH+T +++ + VE+ LE+D L ++ LK+ + Sbjct: 402 ARHVAVYLIRELTQKSYPEIGRELGGRDHSTAIYSFKMVEEKLESDPALTSDIVYLKKKL 461 Query: 501 SE 502 + Sbjct: 462 EQ 463 >gi|29830859|ref|NP_825493.1| chromosomal replication initiation protein [Streptomyces avermitilis MA-4680] gi|38257424|sp|Q82FD8|DNAA_STRAW RecName: Full=Chromosomal replication initiator protein DnaA gi|29607972|dbj|BAC72028.1| putative replication initiator protein [Streptomyces avermitilis MA-4680] Length = 653 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 123/415 (29%), Positives = 202/415 (48%), Gaps = 21/415 (5%) Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 Q Q + R + + S + + P+ + + S G P + Sbjct: 247 QRADYDQQRSDYDKRPDRRNIPDSSPGSGHVHRGGPVGSALPASSGAPGPLAAQPAPATG 306 Query: 158 -------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 L+ +++F TF+ G+SNR A V NPLFI+ GLGKT Sbjct: 307 PGEPTARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKT 361 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QF Sbjct: 362 HLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQF 421 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L K Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + Sbjct: 422 LADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPEL 481 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-IL 388 E R +IL+ + +LN EVL +A ++ + REL+GA ++ S + Sbjct: 482 ETRIAILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPV 536 Query: 389 TAEIADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + + +L L+ ++ I A ++ ++ DL R R +V RQ+AM Sbjct: 537 DLGLTEIVLKDLIPGGEDSAPEITAPAIMAATADYFGLTVEDLCGTSRGRALVTARQIAM 596 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL + +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 597 YLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 651 Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 4/86 (4%) Query: 34 NCESIFTIVSSRL----KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + Q W +R + +++ + L+VP F K ++ R Sbjct: 7 DLAAVWPRVLEQLLGEGRGQGVEVKDEHWIKRCQPLALVADTALLAVPNEFAKGVLEGRL 66 Query: 90 LETITKLFQEEHSRIQGVEILVRSVA 115 +++ E R + I V A Sbjct: 67 APIVSETLSRECGRPIRIAITVDDSA 92 >gi|291438517|ref|ZP_06577907.1| chromosomal replication initiator protein [Streptomyces ghanaensis ATCC 14672] gi|291341412|gb|EFE68368.1| chromosomal replication initiator protein [Streptomyces ghanaensis ATCC 14672] Length = 648 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 118/393 (30%), Positives = 189/393 (48%), Gaps = 14/393 (3%) Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 P + P T + L+ +++F TF+ G+S Sbjct: 264 PEPPPGSGHVHRGGPVGPNLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGAS 323 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR A V NPLFI+ GLGKTHLL AI + + P RV Y+ Sbjct: 324 NRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYV 378 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSA 291 ++E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ Sbjct: 379 SSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNAN 438 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + +LN Sbjct: 439 KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLN 493 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKK 408 EVL +A ++ + REL+GA ++ S + + + +L L+ + Sbjct: 494 APPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGDDSAPE 553 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG FG RD Sbjct: 554 ITSTAIMSATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGALFGGRD 613 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+HA RK+ ++ ++ +V L I Sbjct: 614 HTTVMHADRKIRNLMAERRSIYNQVTELTNRIK 646 Score = 53.5 bits (127), Expect = 7e-05, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 9/126 (7%) Query: 34 NCESIFTIVSSRL------KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 + +++ V +L + D + W +R + +++ + L+VP F K ++ Sbjct: 7 DLAAVWPRVLEQLLGEGHGQGVESKDEH--WIRRCQPLALVADTALLAVPNEFAKGVLEG 64 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP-INTNISKSPIILG 146 R +++ E R + I V A A P P + T P Sbjct: 65 RLAPIVSESLSRECGRPIRIAITVDDTAGEPPAPPAPRPQPRYEEPELPTVRPDRPERQD 124 Query: 147 KQTISP 152 + P Sbjct: 125 RPEREP 130 >gi|239930175|ref|ZP_04687128.1| chromosomal replication initiation protein [Streptomyces ghanaensis ATCC 14672] Length = 638 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 118/393 (30%), Positives = 189/393 (48%), Gaps = 14/393 (3%) Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 P + P T + L+ +++F TF+ G+S Sbjct: 254 PEPPPGSGHVHRGGPVGPNLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGAS 313 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR A V NPLFI+ GLGKTHLL AI + + P RV Y+ Sbjct: 314 NRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYV 368 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSA 291 ++E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ Sbjct: 369 SSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNAN 428 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + +LN Sbjct: 429 KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLN 483 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKK 408 EVL +A ++ + REL+GA ++ S + + + +L L+ + Sbjct: 484 APPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGDDSAPE 543 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG FG RD Sbjct: 544 ITSTAIMSATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGALFGGRD 603 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+HA RK+ ++ ++ +V L I Sbjct: 604 HTTVMHADRKIRNLMAERRSIYNQVTELTNRIK 636 Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 9/121 (7%) Query: 39 FTIVSSRL------KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + V +L + D + W +R + +++ + L+VP F K ++ R Sbjct: 2 WPRVLEQLLGEGHGQGVESKDEH--WIRRCQPLALVADTALLAVPNEFAKGVLEGRLAPI 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSP-INTNISKSPIILGKQTIS 151 +++ E R + I V A A P P + T P + Sbjct: 60 VSESLSRECGRPIRIAITVDDTAGEPPAPPAPRPQPRYEEPELPTVRPDRPERQDRPERE 119 Query: 152 P 152 P Sbjct: 120 P 120 >gi|209515897|ref|ZP_03264759.1| chromosomal replication initiator protein DnaA [Burkholderia sp. H160] gi|209503745|gb|EEA03739.1| chromosomal replication initiator protein DnaA [Burkholderia sp. H160] Length = 387 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 124/349 (35%), Positives = 198/349 (56%), Gaps = 13/349 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F+ G +N++A AA +A+ Y NPLF++ VGLGKTHL+ Sbjct: 49 RSKLNPVLTFDNFVTGKANQLARAAAIQVADNPGISY-----NPLFLYGGVGLGKTHLIH 103 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + +P R+ Y+ AE ++ A + + K ++DLLLIDD+QF GK Sbjct: 104 AIGNQLLMDKPGARIRYIHAEQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGK 163 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +L+ + QV+ +D P E+ +D R+ SR G++V + + EMR Sbjct: 164 SRTQEEFFYAFEALVANKAQVIITSDTYPKEISGIDDRLISRFDSGLTVAIEPPELEMRV 223 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 +IL + + + +++NE+V VA+ + ++ REL+GA +++ F +T E+ Sbjct: 224 AIL-----MRKAQSEFVSLNEDVAFFVAKHLRSNVRELEGALRKILAYSKFHGREITIEL 278 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 E L L+ T + +++ +E+IQ+ VA Y+I D+ S +R + RPRQ+AMYL+K + Sbjct: 279 TKEALKDLL-TVQNRQISVENIQKTVADFYSIKVADMYSKKRPANIARPRQIAMYLAKEL 337 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T +S PEIG FG RDHTTVLHAVRK+ D L E+ +L++ + Sbjct: 338 TQKSLPEIGELFGGRDHTTVLHAVRKIADERSKDAQLNHELHVLEQTLK 386 >gi|148927276|ref|ZP_01810846.1| chromosomal replication initiator protein DnaA [candidate division TM7 genomosp. GTL1] gi|147887335|gb|EDK72789.1| chromosomal replication initiator protein DnaA [candidate division TM7 genomosp. GTL1] Length = 486 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 128/450 (28%), Positives = 225/450 (50%), Gaps = 26/450 (5%) Query: 54 VYASWFQRLKFHS-VLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 + +WF+ + + + VP F K + ++ + I + + + + + V Sbjct: 58 TFQAWFKNTELLEQSSDGGIIIGVPNIFAKRQFEVKFDKMINETLAKNNIEVASITYEVS 117 Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 + +V + T + S SP G+ L+ R+ F T+I GS+ Sbjct: 118 TQKKKAVRDRVTEKLPTVNATPTGGHSLSPP-----------GNSLNPRYTFETYIVGSN 166 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 N +A A Q++A+ Y NP+FI+ VGLGKTHL+QA+ N R++Y+ Sbjct: 167 NDLAYAACQAVAKSPGRKY-----NPIFIYGGVGLGKTHLIQAVGNEIAHTDRAARILYV 221 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 E F+ F IR D RN+D+L+IDD+QF+ GK Q EF H N L + Sbjct: 222 NTETFVNEFLEYIRFKKKG-FSDRYRNVDVLIIDDIQFIAGKEKTQEEFFHTFNVLHQAN 280 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ++ ++D+PP + +L R+RSR + G+++ + + D+E R +I++ + + Sbjct: 281 KQIIISSDKPPRSIPTLTERLRSRFEWGMAIDIQIPDFETRSAIIET-----KASQAGIE 335 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-TAEIADELLSHLVNTGETKKMR 410 + E + ++A + T+ REL+GA NQL+ + + A L+ V + Sbjct: 336 LPRETVEYMASNIKTNIRELEGALNQLLAFCEMRGVTPDIQTATGLIGD-VRQARPHHLT 394 Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHT 470 + I AKH+ I D+LS +R + +V PRQ+AMYL + SFP+I G +DHT Sbjct: 395 AKQIIDRTAKHFQIEPKDILSPKRDKHIVVPRQIAMYLLRSELHLSFPKIAIELGRKDHT 454 Query: 471 TVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T +H++ K+EK ++ D ++++V ++ + Sbjct: 455 TAIHSIDKIEKAIKLDYLIREQVADIREKL 484 >gi|206603335|gb|EDZ39815.1| Chromosomal replication initiator protein (DnaA) ORIGIN [Leptospirillum sp. Group II '5-way CG'] Length = 465 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 135/476 (28%), Positives = 253/476 (53%), Gaps = 22/476 (4%) Query: 35 CESIFTIVSSRL---KNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRY 89 +S++ V R ++ G LK ++ L V ++F++ ++NRY Sbjct: 2 SQSLWNRVLERFCEFGSEPGALERDGILDLLKGAALEGGKDGYSLFVGSSFIQRLVQNRY 61 Query: 90 LETITKLFQEEHSRIQ-GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + + F+E + ++LV+ +P ++ S + P+ + Sbjct: 62 YKDLLTAFREVTRNPEISFDVLVQPENVPRKKRKVVRNSGPEGGLSPGKPVPLPLGEDRH 121 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P + S L+ R+ F ++ G N+ A AA +IA S Y NP ++ SVGLG Sbjct: 122 ---PAWNSNLNPRYFFENYVVGVCNQFAHAAAFAIANNPSKAY-----NPFYLFGSVGLG 173 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI N + P+L+V+Y+T E F+ SAI+ N ++ R ID+L++DD+ Sbjct: 174 KTHLVSAIGNCMVALYPSLKVLYITTESFLNEMVSAIKFNKMNEFRERYRKIDVLIMDDV 233 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK Q E + N+L ++ KQ++ ++D P+++ +L+ R++SR G+ + + Sbjct: 234 QFLSGKERTQEELFYTFNALYENGKQIILSSDCMPNDIPTLEGRLKSRFGWGLIADIQIP 293 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR-HSFAP 386 D+E + ILK ++A + +++ +V+ +A ++ ++ REL+GA +L + Sbjct: 294 DFETKVEILKGKMAQEK-----VDLPMDVVYFLANSIKSNIRELEGAMIRLGAYGNLMGK 348 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E+A LLS L+ + + ++ I + VA ++ + ++ S +R +T+V R VA+ Sbjct: 349 PITIEVARNLLSDLMPLSR-ESISVDRILQEVADYFKVLPKEIRSKKRHKTLVTARHVAV 407 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL + +T +S+PEIGR G RDH+T +++ + VE+ LE+D L ++ LK+ + + Sbjct: 408 YLIRELTQKSYPEIGRELGGRDHSTAIYSFKMVEEKLESDPALTSDIVYLKKKLEQ 463 >gi|258650272|ref|YP_003199428.1| chromosomal replication initiation protein [Nakamurella multipartita DSM 44233] gi|258553497|gb|ACV76439.1| chromosomal replication initiator protein DnaA [Nakamurella multipartita DSM 44233] Length = 557 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 193/357 (54%), Gaps = 12/357 (3%) Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 Q S L+ ++ F TF+ G+SNR A V V NPLFI GL Sbjct: 207 QAPPNAAQSRLNEKYSFETFVIGASNRF-----AHAAAVAVAEAPAVAYNPLFIWGDSGL 261 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHLL I + + + P +RV Y+++E F F +++RD+ + + R++D+LL+DD Sbjct: 262 GKTHLLHGIGHYAQRLFPGMRVRYVSSEEFTNDFINSLRDDRKVAFQRRYRDVDVLLVDD 321 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +QFL+GK Q EF H N+L ++ KQ+V ++DRPP LE+L+ R+R+R + G+ + Sbjct: 322 IQFLEGKEGTQEEFFHTFNTLYNANKQIVISSDRPPKRLETLEDRMRTRFEWGLITDIQP 381 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 + E R +IL+ + A+ + +N ++VL +A + + REL+GA ++ S Sbjct: 382 PELETRIAILRKKAALDR-----MNAPDDVLEFIASRIERNIRELEGALIRVTAFASLNK 436 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A +L LV + + I + A+++N++ ++L + + + RQ+A Sbjct: 437 QAVDLALAQIVLRDLVRDAVSNDIDAATIMAVTAEYFNVTLDELCGPVKTKQIAMARQIA 496 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYL + +T + P+IG FG RDHTTV+HA +K+ L V+ L I + Sbjct: 497 MYLCRELTDLTLPKIGATFGGRDHTTVMHATKKIRTELAERRQTYDHVQELTARIRD 553 Score = 61.6 bits (148), Expect = 3e-07, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 40/124 (32%), Gaps = 3/124 (2%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++ V + L+ + +W + +L + L+ P+ F K I+ + I Sbjct: 13 VWRSVVADLEPTLSQQQ-RAWLSLTQPVGLLGSTALLAAPSEFAKEAIERSLRDAIATAL 71 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP--VFG 155 + + + V P VE + T+ P+ P G Sbjct: 72 SRHLGQPIKLAVTVSEEMEPVVEPADRRYPRDRPPAAPTDSFPGPVNGSIHGGGPGTPNG 131 Query: 156 SPLD 159 S L+ Sbjct: 132 SGLN 135 >gi|71901968|ref|ZP_00684019.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] gi|71728273|gb|EAO30453.1| chromosomal replication initiator protein, DnaA [Xylella fastidiosa Ann-1] Length = 443 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 153/466 (32%), Positives = 243/466 (52%), Gaps = 32/466 (6%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ RL+ + P+ +W + L+ + V L P F+ ++ RYL + +L Sbjct: 8 WSRCLERLETEFPPEDVHTWLRPLQADQ-RGDSVILYAPNPFIIELVEERYLGRLRELLS 66 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 S I+ V + + S P T ++ G+ + + F L Sbjct: 67 -YFSGIREVVLAIGS------------------RPKTTELTVPVDTTGRLSQTVPFNGNL 107 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+ + F F+EG SN++A AA A+ NPL ++ GLGKTHL+ A N Sbjct: 108 DTHYNFDNFVEGRSNQLARAAAWQAAQKPG----DRTHNPLLLYGGTGLGKTHLMFAAGN 163 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + P +V+YL +E F A++D K ID LLIDD+QF GK Q Sbjct: 164 VMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGKDRTQ 223 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + D+E R +I+ Sbjct: 224 EEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIV- 282 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 +++ + I +EV +A+ + ++ R+L+GA N LV R +F +T E + E Sbjct: 283 ----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQET 338 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+AM L+K +T S Sbjct: 339 LRDLLRAQQ-QTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLAMALAKELTEHS 397 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 398 LPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 443 >gi|325143614|gb|EGC65933.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240013] Length = 518 Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 146/529 (27%), Positives = 241/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEH----------SRIQGVEILVRSVALPSVEKTASS---------------PS 127 I + +E E+ V A+ E + + PS Sbjct: 60 IEAVREELAAGRSAFVFKPGEGVRYEMAVVEGAVEPAEPSLHAGSEEMPVQEVLLDELPS 119 Query: 128 ITKLSPINT------------NISKSPIILGKQTISPVFG-------------------- 155 + P + N+ P + P Sbjct: 120 EEPVKPAASKTAADILAERMRNLPHEPRHTAEPASRPESEVLAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|332186224|ref|ZP_08387969.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. S17] gi|332013592|gb|EGI55652.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. S17] Length = 519 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 156/506 (30%), Positives = 259/506 (51%), Gaps = 54/506 (10%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + V + L+ G ++ W + ++ + V L++P+ F W+++ Y + + F Sbjct: 22 WARVRANLRESAGARLFDQWLKPMELIEGDEPDTVRLALPSAFATNWVRSHYADRLHLEF 81 Query: 98 QEEHSRIQGVEILVRSVALPS---VEKTASSPSITKLSPINTNISKSPIILGKQTI---- 150 + ++ V I R+ + + +T + + + +S P+ Q Sbjct: 82 KAVLPEVRAVMIETRAPSRAAKLTSVETLDATPAPRAAVSRVEVSPEPVESDDQPSLFAV 141 Query: 151 ----------------------------------SPVFGSPLDSRFVFSTFIEGSSNRVA 176 S PLD R F F+ SSNRVA Sbjct: 142 PTPAKPARPAPAPAPATRAAKVASVAPVPAVPLRSASDRPPLDPRLTFDRFVVDSSNRVA 201 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 AA S+AE R +PLF+H G GKTHL+ AIA+A ++ P V+ ++AE Sbjct: 202 FNAALSLAE-----PGLPRFSPLFLHGGTGQGKTHLMHAIAHAFLESHPEAVVLCMSAER 256 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVV 295 FM+ F +A+R + K LR+ DLLLIDD+QF+ GK Q EF H +N L+ + K++V Sbjct: 257 FMFDFVAAMRARDTHSFKTRLRSADLLLIDDLQFIAGKDSTQEEFFHTVNELVSAGKRLV 316 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 +ADR P L+ ++PRI RL G+ + D +R +IL ++ + P + + + Sbjct: 317 ISADRSPQSLDGMEPRIIGRLGAGLVADIKAPDLTLRRTILNRKV----SDLPDIVVPND 372 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDI 414 VL +A + + REL+GA N++V + E A L ++ G +++ I++I Sbjct: 373 VLDLLASRIRGNIRELEGALNRVVAYAQLTGEKIDLEFAVATLGEVLR-GAQRRITIDEI 431 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 Q++V++H+ + DL+S RR R + RPRQ+AMYL+K +T RS PEIGR+FG RDH+TV++ Sbjct: 432 QKLVSRHFELKPLDLVSARRARAIARPRQIAMYLAKRLTTRSLPEIGRKFGGRDHSTVIY 491 Query: 475 AVRKVEKMLETDITLKKEVELLKRLI 500 AVRK+E++ +TD + V +L + + Sbjct: 492 AVRKIEELRDTDRDIDNAVRVLMKEL 517 >gi|261378191|ref|ZP_05982764.1| DNA replication initiator protein [Neisseria cinerea ATCC 14685] gi|269145660|gb|EEZ72078.1| DNA replication initiator protein [Neisseria cinerea ATCC 14685] Length = 515 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 145/526 (27%), Positives = 237/526 (45%), Gaps = 69/526 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL++ + P +A W L + + F +K+++ Sbjct: 1 MTLAEFWPMCLRRLRDMLPPGQFAQWIAPLTVGE-EGEVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEHSRIQGVEI----------------------LVRSVALPSVEKTASSPSITK 130 I + QE VR E + PS Sbjct: 60 IEAVMQELVPNRAAFIFKPGEGIRYEMADVGVVEKPPVHEVRDELPVQAELSDEMPSEGP 119 Query: 131 LSPINTNISK------------SPIILGKQTISPVFG--------------------SPL 158 + ++ P + P + L Sbjct: 120 AKSVQAKTAEDILAERMKNLLHEPRHTAEPASRPESEVLAKARTDAQRDAEEARYEQTNL 179 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ N Sbjct: 180 SPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVGN 234 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 ELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTM 294 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ Sbjct: 295 EEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAILQ 354 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADE 395 + E ++I +E + +A + ++ REL+GAFN++ F P++ ++A Sbjct: 355 K-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDIDLART 409 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 410 ALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTTL 468 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 SLPSIGDSFGGRDHTTVMHGIRAVSKLREEDPELAQDYEKLLILIQ 514 >gi|302559666|ref|ZP_07312008.1| chromosomal replication initiator protein DnaA [Streptomyces griseoflavus Tu4000] gi|302477284|gb|EFL40377.1| chromosomal replication initiator protein DnaA [Streptomyces griseoflavus Tu4000] Length = 652 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 119/393 (30%), Positives = 191/393 (48%), Gaps = 14/393 (3%) Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSS 172 P + P T + L+ +++F TF+ G+S Sbjct: 268 PEPPPGSGHVHRGGPVGPNLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGAS 327 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR A V NPLFI+ GLGKTHLL AI + + P RV Y+ Sbjct: 328 NRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYV 382 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSA 291 ++E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ Sbjct: 383 SSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNAN 442 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + +LN Sbjct: 443 KQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLN 497 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKK 408 EVL +A ++ + REL+GA ++ S + + + +L L+ T + Sbjct: 498 APPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLMPGGDDSTPE 557 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I A ++ ++ DL + R R +V RQ+AMYL + +T S P+IG FG RD Sbjct: 558 ITSTAIMGATADYFGLTVEDLCGSSRGRQLVTARQIAMYLCRELTDLSLPKIGALFGGRD 617 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+HA RK+ ++ ++ +V L I Sbjct: 618 HTTVMHADRKIRNLMAERRSIYNQVTELTNRIK 650 Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query: 34 NCESIFTIVSSRL------KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 + +++ V +L + G D + W +R + +++ + L+VP F K ++ Sbjct: 7 DLAAVWPRVLEQLLGEGRGQGVEGKDEH--WIRRCQPLALVADTALLAVPNEFAKGVLEG 64 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSP----SITKLSPINTNISKSP 142 R +++ E R + I V P +L P + P Sbjct: 65 RLAPVVSETLSRECGRPIRIAITVDDTVGEPSPPPVPRPQPRYEEPELPPGRQDRPDRP 123 >gi|268596039|ref|ZP_06130206.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae FA19] gi|268549827|gb|EEZ44846.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae FA19] Length = 518 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 145/529 (27%), Positives = 240/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPHGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEE-----------HSRIQGVEILVRSVALPS----------------------- 118 I + +E ++ + V P+ Sbjct: 60 IEAVREELAAGRPAFVFKPGEGVRYEMVAVEGAVEPAEPSLHAGSEEMPVQEVLLDELPS 119 Query: 119 ---VEKTASSPSITKLSPINTNISKSPIILGKQTISPVF--------------------G 155 V+ AS + L+ N+ P P Sbjct: 120 EKPVKPAASKTAADILAERMKNLPHEPRQAAGPASRPESAAVAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|184199647|ref|YP_001853854.1| chromosomal replication initiator protein DnaA [Kocuria rhizophila DC2201] gi|183579877|dbj|BAG28348.1| chromosomal replication initiator protein DnaA [Kocuria rhizophila DC2201] Length = 564 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 205/386 (53%), Gaps = 18/386 (4%) Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGS------PLDSRFVFSTFIEGSSNRVALT 178 P + P + + + G + + S L+ ++VF +F+ G SNR A Sbjct: 184 PPRRDQERPAPAHEPREVLSTGSGSDTSPADSEWDSSARLNPKYVFDSFVIGQSNRFAHA 243 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 AA ++AE + Y NPLFI+ GLGKTHLL AI + + + P +RV Y+ +E F Sbjct: 244 AAFAVAETPAKAY-----NPLFIYGDSGLGKTHLLHAIGHYAKRLYPKMRVRYVNSEEFT 298 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 F ++IRD+ + K RN+DLLLIDD+QFL GK Q EF H N+L + KQ+V Sbjct: 299 NDFINSIRDDEGSSFKGIYRNVDLLLIDDIQFLAGKEHTQEEFFHTFNALHNHEKQIVIT 358 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +D PP +L R+RSR + G+ + + E R +IL+ + ++ ++V+ Sbjct: 359 SDMPPKQLTGFAERMRSRFEWGLITDVQPPELETRIAILRK-----KAISEGMDAPDDVM 413 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQR 416 ++A ++T+ REL+GA ++ S + +A+ +L L+ +++ I Sbjct: 414 EYIASHISTNIRELEGALIRVTAFASLNKQPVDLPLAELVLKDLITDDGGQEITAASILG 473 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 A +NI+ ++L S R RT+V RQ+AMYL + +T S P+IG+ G RDHTTV+HA Sbjct: 474 QTAAFFNITLDELKSKSRTRTLVTARQIAMYLLRELTDMSLPKIGQELGGRDHTTVMHAD 533 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 RK+ ++ + +V L I + Sbjct: 534 RKIRTLMAERRQIFDQVTELTNRIKQ 559 >gi|282858609|ref|ZP_06267771.1| chromosomal replication initiator protein DnaA [Prevotella bivia JCVIHMP010] gi|282588613|gb|EFB93756.1| chromosomal replication initiator protein DnaA [Prevotella bivia JCVIHMP010] Length = 467 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 122/472 (25%), Positives = 223/472 (47%), Gaps = 14/472 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNR 88 + V+ S++ + V Y +WF+ L F S L V P+ F+ +++ Sbjct: 1 MSVSPNSLWEQCLCLIAENVTEQQYNTWFKPLVFKSYQPATKRLLVLVPSMFVYEYLEEH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y++ + K+ + V + + + + I + + + Sbjct: 61 YVDLLKKVLTRVFGERVMLTYSVITDKDHQLTQDLQAEDIDPIDSKRPTVRGNQSPTVID 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + P S LD F+ ++EG SN++ LT +IAE + + NPLFI+ G G Sbjct: 121 AVLPDIDSQLDPHKSFNNYVEGDSNKMPLTIGLAIAEHPNKN----QFNPLFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI K P RV+Y++A F ++ +++R N + + + ID+L++DD+ Sbjct: 177 KTHLINAIGLKVKKLYPQKRVLYVSARLFQVQYTNSVRTNTTNDFINFYQTIDVLIVDDI 236 Query: 269 QFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + K+++ A+DRPP +LE ++ R+ +R G+ L Sbjct: 237 QEWMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLEGMNDRLLTRFVAGLITELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + ++ IL +++ L I E V+ +A+T S R+L G N L+ + Sbjct: 297 NIQLCVDILHSKIKRD-----GLIIPENVIQFIAQTANGSVRDLQGVINSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + I+DI V H+N+++ + S R + +V RQVAM Sbjct: 352 SIDMRLAERVIKRAVKID-DEPLTIDDILDKVCNHFNVTQAAVNSRSRKKDIVIARQVAM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Y+++ T IG+ G RDH+TV+H+ K+E L+ D E+ ++ Sbjct: 411 YMAQKYTKMPASRIGKLVGGRDHSTVIHSCAKIEDRLQVDKGFTAELAAIEN 462 >gi|32141219|ref|NP_733620.1| chromosomal replication initiation protein [Streptomyces coelicolor A3(2)] gi|118710|sp|P27902|DNAA_STRCO RecName: Full=Chromosomal replication initiator protein DnaA gi|153240|gb|AAA26734.1| DnaA [Streptomyces coelicolor A3(2)] gi|24413863|emb|CAD55464.1| chromosomal replication initiator protein [Streptomyces coelicolor A3(2)] Length = 656 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 118/380 (31%), Positives = 191/380 (50%), Gaps = 19/380 (5%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 P +P +P + + L+ +++F TF+ G+SNR A Sbjct: 290 PGPATGAPGPLAAQPAPATGPGEP-----TARLNPKYLFDTFVIGASNRF-----AHAAA 339 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 V NPLFI+ GLGKTHLL AI + + P RV Y+++E F F ++I Sbjct: 340 VAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSI 399 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 RD + + R +D+LL+DD+QFL K Q EF H N+L ++ KQ+V ++DRPP + Sbjct: 400 RDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 459 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 L +L+ R+R+R + G+ + + E R +IL+ + +LN EVL +A + Sbjct: 460 LVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLNAPPEVLEFIASRI 514 Query: 365 TTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKKMRIEDIQRMVAKH 421 + + REL+GA ++ S + + + +L L+ ++ I A + Sbjct: 515 SRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDSAPEITSTAIMGATADY 574 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 + ++ DL R R +V RQ+AMYL + +T S P+IG FG RDHTTV+HA RK+ Sbjct: 575 FGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGALFGGRDHTTVMHADRKIRN 634 Query: 482 MLETDITLKKEVELLKRLIS 501 ++ ++ +V L I Sbjct: 635 LMAERRSIYNQVTELTNRIK 654 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 4/118 (3%) Query: 34 NCESIFTIVSSRLKNQVGPDVYAS----WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + S W +R + +++ + L+VP F K ++ R Sbjct: 7 DLAAVWPRVLEQLLGEGRGQGVESKDEHWIRRCQPLALVADTALLAVPNEFAKGVLEGRL 66 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +++ E R + I V A +P P + G+ Sbjct: 67 APIVSETLSRECGRPIRIAITVDDTAGEPAGPAPQAPQSPPSRPQHRYEEPELPAPGQ 124 >gi|311742163|ref|ZP_07715973.1| DNA-directed DNA replication initiator protein [Aeromicrobium marinum DSM 15272] gi|311314656|gb|EFQ84563.1| DNA-directed DNA replication initiator protein [Aeromicrobium marinum DSM 15272] Length = 491 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 135/490 (27%), Positives = 230/490 (46%), Gaps = 38/490 (7%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ + L P W S+ + IV ++V + +A +++R + Sbjct: 13 LDAAWQSAVETL----SPGA-KVWVYPAVPLSLHNGIVIVAVADDLARAQLESRVRPALE 67 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK--------------------LSPI 134 + E + + + + ++ + ++ Sbjct: 68 QALTRELDTEIRLVVTIDTAITDDSKRQNDLSTYSQNVGFTAEVMEDTDEEDEEHTRERF 127 Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + ++ P ++ + + + + L+ R++F F+ GSSNR A AA + AE Y Sbjct: 128 APSWARQPTVVTGRPAN-IAEARLNPRYLFENFVIGSSNRFAHAAAVAAAEAPGKAY--- 183 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPL IH GLGKTHLL AI + + P+ RV Y+ E F +AI + LK Sbjct: 184 --NPLVIHGESGLGKTHLLHAIGHYVLGLYPSSRVRYVNTEEFTNDVINAIGERRTGALK 241 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R ID+LL+DD+QF++GK Q EF H N+L + KQ+V +DRPP L++L+ R+R Sbjct: 242 RKYREIDVLLVDDIQFIEGKEATQEEFFHTFNALHNENKQIVMTSDRPPKNLKTLEERLR 301 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +R + G++ + + E R +IL+ + L + +VL +A V ++ REL+G Sbjct: 302 NRFEWGLTTDVTPPELETRIAILRK-----KASSDGLTVPADVLEFIASKVQSNIRELEG 356 Query: 374 AFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A + + + +A +L LV G ++ I I A + + +L S Sbjct: 357 ALIRATAFANLQGTTVDLNLAQIVLKDLVAEGGEPEVTIGLILAQTAAYSEFTIEELCSG 416 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 R R +V RQ+AMYL + +T S P+IG+ FG RDHTTV+HA RK+ K+++ + + Sbjct: 417 NRTRDLVLARQIAMYLCRELTEMSLPKIGQEFGGRDHTTVMHAERKIGKLMKEKHAVYNQ 476 Query: 493 VELLKRLISE 502 V L I + Sbjct: 477 VTELTSRIKQ 486 >gi|325270017|ref|ZP_08136625.1| DNA-directed DNA replication initiator protein DnaA [Prevotella multiformis DSM 16608] gi|324987602|gb|EGC19577.1| DNA-directed DNA replication initiator protein DnaA [Prevotella multiformis DSM 16608] Length = 468 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 115/472 (24%), Positives = 222/472 (47%), Gaps = 14/472 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + V+ ++++ +K V + +WF+ + S L VP+ F+ +++ Sbjct: 1 MNVSPKNLWDSCLQLIKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEGH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y++ + K+ + + V + + ++S + Sbjct: 61 YVDLLRKVLTRVFGQGVQLTYRVMVDQEHHLSQDLQQDDAEEISSQRPTSRGNQSPTVLD 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S LD F ++EG SN++ + SIAE + T + NP+FI+ G G Sbjct: 121 AVPQDIDSQLDPHKSFGNYVEGDSNKLPRSIGLSIAEHPN----TTQFNPMFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + + P RV+Y++A F ++ ++R N + + + ID+L++DD+ Sbjct: 177 KTHLINAIGLRTKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDI 236 Query: 269 QFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + ++++ A+DRPP +L+ ++ R+ +R G+ L Sbjct: 237 QEWATATKTQDTFFHIFNHLFRNGRRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + ++ IL +++ LNI E+V+ +A T S R+L G N L+ + Sbjct: 297 NVQLCIDILHSKIKRD-----GLNIPEDVVRFIAETANGSVRDLQGVINSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + I+DI V HYN++ + S R + +V RQV+M Sbjct: 352 NVDMRLAERVIKRAVKID-DEPLTIDDILDKVCSHYNVTATAVNSRSRKKDIVMARQVSM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Y+++ T IG+ G+RDH+TV+H+ K+E L+ D E+ ++ Sbjct: 411 YMAQKYTKMPASRIGKLVGNRDHSTVIHSCSKIEDRLKMDKGFFAEIASIEN 462 >gi|182680573|ref|YP_001828733.1| chromosomal replication initiation protein [Xylella fastidiosa M23] gi|182630683|gb|ACB91459.1| chromosomal replication initiator protein DnaA [Xylella fastidiosa M23] Length = 443 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 153/466 (32%), Positives = 243/466 (52%), Gaps = 32/466 (6%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ RL+ + P+ +W + L+ + V L P F+ ++ RYL + +L Sbjct: 8 WSRCLERLETEFPPEDVHTWLRPLQADQ-RGDSVILYAPNTFIIELVEERYLGRLRELLS 66 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 S I+ V + + S P T ++ G+ + + F L Sbjct: 67 -YFSGIREVVLAIGS------------------RPKTTELTVPVDTTGRLSQTVPFNGNL 107 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+ + F F+EG SN++A AA A+ NPL ++ GLGKTHL+ A N Sbjct: 108 DTHYNFDNFVEGRSNQLARAAAWQAAQKPG----DRTHNPLLLYGGTGLGKTHLMFAAGN 163 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + P +V+YL +E F A++D K ID LLIDD+QF GK Q Sbjct: 164 VMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGKDRTQ 223 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + D+E R +I+ Sbjct: 224 EEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIV- 282 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 +++ + I +EV +A+ + ++ R+L+GA N LV R +F +T E + E Sbjct: 283 ----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQET 338 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+AM L+K +T S Sbjct: 339 LRDLLRAQQ-QTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLAMALAKELTEHS 397 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 398 LPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 443 >gi|332638152|ref|ZP_08417015.1| chromosomal replication initiation protein [Weissella cibaria KACC 11862] Length = 470 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 144/484 (29%), Positives = 240/484 (49%), Gaps = 30/484 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPD-VYASW---FQRLKFHSVLHNIVHLSVPTNF---LKAWI 85 ++ ++ + L+ + +A++ L+ +N V L + TN W+ Sbjct: 1 MDPVQLWNAIKEELRESISTGFSFANYVDTLTPLQVLENKNNTVTLHLSTNHEQVADEWL 60 Query: 86 K--NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 + Y + ++ G + +PSV + P+ P + Sbjct: 61 NPSSSYYLAFMQAAMTATMKLYGQPTFI----VPSVTYISPQPTSLFEVPATDAAPEQQN 116 Query: 144 ILGKQTISPVF--GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFI 201 G ++ F S L+ F F TF+ NR A AQ++A+ + NPL I Sbjct: 117 TTGTSPVAADFVTQSILNPEFRFETFVSSDENREAYAVAQAVADNPG-----TQWNPLLI 171 Query: 202 HASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRN 259 + VGLGKTHL+QAI N ++ PN +V ++T E F+ F A+R K R+ Sbjct: 172 YGGVGLGKTHLMQAIGNKVLENNPNAKVKFITTEDFINDFTEALRRGQKETEAFKREYRS 231 Query: 260 IDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 DLLL+DD+QFL GK IQ EF + N++ Q+V +D+ P E+ L+ R+ +R Sbjct: 232 TDLLLVDDVQFLAGKEKIQEEFFNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFGQ 291 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G S + D R +IL+N + + LNI +V+ +A V T+ R+L+G FNQ+ Sbjct: 292 GYSANITKPDLPTRVAILRN-----KSDQENLNIPNDVIDEIAAAVDTNVRDLEGVFNQV 346 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 + FA +T + A ++L + N + + I IQ VAK ++++ DL +R + Sbjct: 347 AGKLRFASQPVTVDTARDILETM-NFKRQRAITIPIIQDTVAKFFDVTVQDLNGKKRNKE 405 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V PRQ+AMYL++ +T S P+IGR FG +DHTTV+H+ K++ +E D L +V+ ++ Sbjct: 406 IVVPRQIAMYLARELTQDSLPQIGRAFGGKDHTTVMHSTEKIDNAIENDALLADQVQKIR 465 Query: 498 RLIS 501 +S Sbjct: 466 EELS 469 >gi|319949431|ref|ZP_08023492.1| chromosomal replication initiation protein [Dietzia cinnamea P4] gi|319436893|gb|EFV91952.1| chromosomal replication initiation protein [Dietzia cinnamea P4] Length = 501 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 131/507 (25%), Positives = 240/507 (47%), Gaps = 46/507 (9%) Query: 31 LEVNCESIFTIVSSRLKN---------QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFL 81 + E +++ V RL + + +W + ++ +V++ L+ P+ F Sbjct: 1 MSPELEHVWSAVLDRLTDPELASDDNPALSRQQ-QAWLRLVQPIAVVNGFAMLAAPSAFA 59 Query: 82 KAWIKNRYLETITKLFQEEHSRIQGVEILVRS---------------------VALPSVE 120 + I++ IT+ + + + V + + P+ E Sbjct: 60 RDNIESVLRGPITRALSAQLGEPVDLAVKVDTSLAGGQPPTDDQDDQVIDADEIHRPAAE 119 Query: 121 KTASSPSITKLSPINTNISKSPIILGK---QTISPVFGSPLDSRFVFSTFIEGSSNRVAL 177 + + I+ ++ G + +S L+ R+ FS F++G+SNR Sbjct: 120 EEHPPATTRPRRMTEEQIAAERLLHGSDRDEALSAATAPGLNERYTFSAFVQGNSNRF-- 177 Query: 178 TAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYF 237 A + NPLFI GLGKTHLL AI + S++ +V Y++ E F Sbjct: 178 ---ARAAALAVAEAPARAYNPLFIWGESGLGKTHLLHAIGHYSLRMYSEQKVKYVSTEEF 234 Query: 238 MWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVA 296 F +++RD K R D+LL+DD+QFL GK +Q EF H N++ ++ KQ+V Sbjct: 235 TNDFINSVRDGRQNMFKKRYREADILLVDDIQFLIGKEQVQEEFFHTFNTIHNAQKQIVI 294 Query: 297 AADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEV 356 ++DRPP +L+ L+ R+R+R + G+ + + E R +IL + + + +V Sbjct: 295 SSDRPPKQLQPLEDRLRTRFEWGLITDIQPPELETRIAILDK-----KAKSENYVVPRDV 349 Query: 357 LMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQ 415 L +A V + REL+GA ++V S + +A+ +L +V+ ++ ++ I Sbjct: 350 LELIATRVQRNIRELEGALIRVVAFASLNGHEIDVPLAEIVLRDVVSDDDSLQISAATIM 409 Query: 416 RMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHA 475 + A+ ++ S ++L + R++ R RQ+AMYL + +T S P+IG FG +DHTTV++A Sbjct: 410 AVTAEFFSTSIDELCGTSKTRSLSRARQIAMYLCRELTDLSLPKIGVTFGGKDHTTVMYA 469 Query: 476 VRKVEKMLETDITLKKEVELLKRLISE 502 RK+ K ++ D +++ L I E Sbjct: 470 QRKILKEIKDDRRTYDQIQELTARIKE 496 >gi|327312316|ref|YP_004327753.1| chromosomal replication initiator protein DnaA [Prevotella denticola F0289] gi|326945680|gb|AEA21565.1| chromosomal replication initiator protein DnaA [Prevotella denticola F0289] Length = 468 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 114/471 (24%), Positives = 221/471 (46%), Gaps = 14/471 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + V+ ++++ +K V + +WF+ + S L VP+ F+ +++ Sbjct: 1 MNVSPKNLWDNCLQLIKENVTEQQFDTWFRPIVLQSYKPASKTLLVQVPSQFVYEYLEEH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 Y++ + K+ + + V + + ++S + Sbjct: 61 YVDLLRKVLTRVFGQGVQLTYRVMVDQEHHLSQDLQQDDAEEISSQRPTTRGNQSPTVLD 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + S LD F+ ++EG SN++ + SIAE + T + NP+FI+ G G Sbjct: 121 AVPQDIDSQLDPHKSFNNYVEGDSNKLPRSIGLSIAEHPN----TTQFNPMFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ A+ + P RV+Y++A F ++ ++R N + + + ID+L++DD+ Sbjct: 177 KTHLVNAVGLRVKQLYPQKRVLYVSARLFQVQYTDSVRQNTTNDFINFYQTIDVLIVDDI 236 Query: 269 QFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L Sbjct: 237 QEWATATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNDRLLTRFSCGLIAELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + ++ IL N++ L I E+V+ ++ T S R+L G N L+ + Sbjct: 297 NVQLCIDILHNKIKRD-----GLCIPEDVVRFISETANGSVRDLQGVINSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + I+DI V HYN++ + S R + +V RQV+M Sbjct: 352 NIDMRLAERVIKRAVKID-DEPLTIDDILDKVCSHYNVTTTAVNSRSRKKDIVMARQVSM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 Y+++ T IG+ G+RDH+TV+H+ K+E L+ D E+ ++ Sbjct: 411 YMAQKYTKMPASRIGKLVGNRDHSTVIHSCSKIEDRLKIDKGFFAEMASIE 461 >gi|282863320|ref|ZP_06272379.1| chromosomal replication initiator protein DnaA [Streptomyces sp. ACTE] gi|282561655|gb|EFB67198.1| chromosomal replication initiator protein DnaA [Streptomyces sp. ACTE] Length = 577 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 120/399 (30%), Positives = 197/399 (49%), Gaps = 19/399 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-----LDSRFVFST 166 R P + + P + +P G+ L+ +++F T Sbjct: 187 RQGYEPQRDGRDRHDMQEQQPPHHQGGHGRAGGPPGSQSAPAPGTNEPHARLNPKYLFDT 246 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G+SNR A V NPLFI+ GLGKTHLL AI + + P Sbjct: 247 FVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPG 301 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLN 285 RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Q EF H N Sbjct: 302 TRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFHTFN 361 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R +IL+ + Sbjct: 362 TLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIAILRK-----KA 416 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN-- 402 +LN EVL +A ++ + REL+GA ++ S + + + +L L+ Sbjct: 417 VQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGG 476 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 ++ I A ++ ++ DL + R R +V RQ+AMYL + +T S P+IG Sbjct: 477 EDTAPEITAPAIMASTADYFGLTVEDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGA 536 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 537 QFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 575 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 56 ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA 115 W +R + +++ + L+VP + K ++ R I++ E R + I V A Sbjct: 18 KQWIERCQPLALVADTALLAVPNEWGKRVLEGRLAPLISETLTRECGRPIRIAITVDDSA 77 >gi|288801133|ref|ZP_06406589.1| DNA replication initiator protein, ATPase [Prevotella sp. oral taxon 299 str. F0039] gi|288332067|gb|EFC70549.1| DNA replication initiator protein, ATPase [Prevotella sp. oral taxon 299 str. F0039] Length = 471 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 132/477 (27%), Positives = 232/477 (48%), Gaps = 15/477 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNR 88 ++ + +++ +++ + +++WF ++ HS N V L VP+ + +I+ Sbjct: 1 MKPSPNTLWEECLKQIRVHLPEKQFSTWFSTIQLHSYVEKENCVILQVPSEMARDYIEEH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALP-SVEKTASSPSITKLSPINTNISKSPIILGK 147 Y+ + ++ ++ + LP S A + N + Sbjct: 61 YMRLLANALRDNFGSSVKLKYSISMAKLPHSANNQAGEQNDNDGLYSGNNSFPNSDSYQD 120 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + + LD+ ++F +FI G SN VAL+ + SIAE + + NP+F+ G Sbjct: 121 NSKREAWRNYLDNHYIFDSFIRGESNAVALSVSLSIAEHPTR----RQFNPMFLFGPSGC 176 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI K N +V+Y++A+ F ++ SA N + +NID+L++DD Sbjct: 177 GKTHLINAIGLRIAKLYENKKVLYVSAKDFEVQYTSAQYTNKINDFMHFYQNIDVLIVDD 236 Query: 268 MQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +Q GK F ++ N L + K+++ A DRPP+ELE ++ R+ +R GV LG Sbjct: 237 IQSWAGKKKTLETFFYIFNHLFRNGKRIILACDRPPAELEGMEERLLTRFVWGVVEELGK 296 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFA 385 + ++ ILK+++ L+I ++V+ ++A S R L+G N L + Sbjct: 297 PNIQLCIDILKSKVKRD-----GLSIPDDVIRYIAERANGSIRYLEGVINTLYAFSINLG 351 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + ADE + LV K + E+I V K +++S + S R V RQVA Sbjct: 352 REIDIAFADERIKKLVKID-DKAISTEEIIDAVCKQFDVSSTAIGSRSRKHDFVVARQVA 410 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MYL++ T S IGR G RDH TV+H+ +VEK L+TD V++L+++ + Sbjct: 411 MYLAQKYTNMSISRIGRLVGGRDHATVIHSCNQVEKRLKTDKDFASSVKILEQIFDK 467 >gi|28197946|ref|NP_778260.1| chromosomal replication initiation protein [Xylella fastidiosa Temecula1] gi|32129493|sp|Q87FC6|DNAA_XYLFT RecName: Full=Chromosomal replication initiator protein DnaA gi|28056006|gb|AAO27909.1| chromosomal replication initiator [Xylella fastidiosa Temecula1] gi|307579027|gb|ADN62996.1| chromosomal replication initiation protein [Xylella fastidiosa subsp. fastidiosa GB514] Length = 439 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 153/466 (32%), Positives = 243/466 (52%), Gaps = 32/466 (6%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ RL+ + P+ +W + L+ + V L P F+ ++ RYL + +L Sbjct: 4 WSRCLERLETEFPPEDVHTWLRPLQADQ-RGDSVILYAPNTFIIELVEERYLGRLRELLS 62 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 S I+ V + + S P T ++ G+ + + F L Sbjct: 63 -YFSGIREVVLAIGS------------------RPKTTELTVPVDTTGRLSQTVPFNGNL 103 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 D+ + F F+EG SN++A AA A+ NPL ++ GLGKTHL+ A N Sbjct: 104 DTHYNFDNFVEGRSNQLARAAAWQAAQKPG----DRTHNPLLLYGGTGLGKTHLMFAAGN 159 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + P +V+YL +E F A++D K ID LLIDD+QF GK Q Sbjct: 160 VMRQVNPTYKVMYLRSEQFFSAMIRALQDKSMDQFKRQFHQIDALLIDDIQFFAGKDRTQ 219 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L D +Q++ DR P E+ L+PR++SRL G+SV + D+E R +I+ Sbjct: 220 EEFFHTFNALFDGKQQIILTCDRYPREVNGLEPRLKSRLAWGLSVAIDPPDFETRAAIV- 278 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADEL 396 +++ + I +EV +A+ + ++ R+L+GA N LV R +F +T E + E Sbjct: 279 ----LAKARERGATIPDEVAFLIAKKMHSNVRDLEGALNTLVARANFTGRAVTIEFSQET 334 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L L+ + + + I +IQ++VA +Y + DLLS RR R++ RPRQ+AM L+K +T S Sbjct: 335 LRDLLRAQQ-QTIGIPNIQKIVADYYGLQIKDLLSKRRTRSLARPRQLAMALAKELTEHS 393 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 PEIG F RDHTTVLHA R+++ ++ET+ L+++ + L R SE Sbjct: 394 LPEIGDAFAGRDHTTVLHACRQIKLLMETETKLREDWDKLMRKFSE 439 >gi|228931507|ref|ZP_04094417.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228828150|gb|EEM73874.1| Chromosomal replication initiator protein dnaA [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 313 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 129/323 (39%), Positives = 202/323 (62%), Gaps = 12/323 (3%) Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 ++AE + Y NPLFI+ VGLGKTHL+ AI + I+ PN +VVYL++E F Sbjct: 1 MAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAIGHYVIEHNPNAKVVYLSSEKFTNE 55 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAAD 299 F ++IRDN A++ ++ RN+D+LLIDD+QFL GK Q EF H N+L + +KQ+V ++D Sbjct: 56 FINSIRDNKAVDFRNKYRNVDVLLIDDIQFLAGKEQTQEEFFHTFNALHEESKQIVISSD 115 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 RPP E+ +L+ R+RSR + G+ + D E R +IL+ + + L+I EV+++ Sbjct: 116 RPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRK-----KAKAEGLDIPNEVMLY 170 Query: 360 VARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A + ++ REL+GA ++V S + A++A E L ++ + K + I DIQ+ V Sbjct: 171 IANQIDSNIRELEGALIRVVAYSSLINKDINADLAAEALRDIIPNSKPKIISIYDIQKAV 230 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 Y + D + +R ++V PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA K Sbjct: 231 GDVYQVKLEDFKAKKRTKSVAFPRQIAMYLSRELTDSSLPKIGEEFGGRDHTTVIHAHEK 290 Query: 479 VEKMLETDITLKKEVELLKRLIS 501 + K+L+TD L+K+VE + ++ Sbjct: 291 ISKLLKTDTQLQKQVEEINDILK 313 >gi|296271546|ref|YP_003654177.1| chromosomal replication initiator protein DnaA [Arcobacter nitrofigilis DSM 7299] gi|296095721|gb|ADG91671.1| chromosomal replication initiator protein DnaA [Arcobacter nitrofigilis DSM 7299] Length = 437 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 128/465 (27%), Positives = 229/465 (49%), Gaps = 39/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + S LKN+ Y + ++L + S NI VP ++ WIK++Y + I Sbjct: 4 KEILSVLKNETSKSDYDRYLKQLIYKKISSDDNIAIFEVPNKYIANWIKSKYSKIIQHCI 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + VEI + +K I+ + + V + Sbjct: 64 ETIDGTKPTVEIKL----------------------TGEKKTKKEILKEQVGKTDVESTI 101 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F +F+ GSSN++A A+ ++++ Y NPLFI+ GLGKTHLLQAI Sbjct: 102 LNPSYTFDSFVVGSSNQMAFNASLAVSKKPGIQY-----NPLFIYGGTGLGKTHLLQAIG 156 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N +I+ ++Y+T E FM F AI++ + + R D+LLIDD+QFL GK Sbjct: 157 NDAIEH--GRTIIYVTIEQFMNDFTFAIKNKNMEHFRSKYRKCDVLLIDDIQFLSGKEQT 214 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L ++ KQ+V +DR PS++ L R++SR + G++ + + E + +I+ Sbjct: 215 QEEFFHTFNELHNAEKQIVMTSDRLPSQIAGLVDRLKSRFEWGLTADVQIPGLETKIAII 274 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 + + E +++ E++ ++A + S RE++G ++ + + + Sbjct: 275 EK-----KSELNGIHLEREIVNYIATNLDNSIREIEGVLIRINASAALLNQEINLPMVQN 329 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 LL + + +++ DI +VA NI +D+ S +R V R++ +YL++ +T Sbjct: 330 LLKEQIKE-TKENIKLPDIITIVAIELNIKPSDIKSKKRTAIVANARRIVIYLARELTHN 388 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+I + G +DH+++ H ++K +++E D K +E LK I Sbjct: 389 SMPDIAKFLGMKDHSSISHNIKKANELIEKDENFKLIIENLKNKI 433 >gi|300781938|ref|YP_003762229.1| chromosomal replication initiator protein DnaA [Amycolatopsis mediterranei U32] gi|299791452|gb|ADJ41827.1| chromosomal replication initiator protein DnaA [Amycolatopsis mediterranei U32] Length = 547 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 115/379 (30%), Positives = 201/379 (53%), Gaps = 12/379 (3%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 ++ ++ P + + + L+ ++ F TF+ G+SNR A Sbjct: 175 AAVHEIWPTFSGQPIAGQPYTAPAQPQTSKTKLNEKYTFDTFVIGASNRF-----AHAAA 229 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 V NPLFI GLGKTHLL A+ + + + P +RV Y++ E F F +++ Sbjct: 230 VAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSL 289 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 RD+ + + R+ID+LL+DD+QFL+GK Q EF H N+L ++ KQ+V ++DRPP Sbjct: 290 RDDRKVAFQRRYRDIDILLVDDIQFLEGKEGTQEEFFHTFNTLHNANKQIVVSSDRPPKR 349 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 LE+L+ R+R+R + G+ + + E R +IL+ + A + L + EVL +A V Sbjct: 350 LETLEDRLRTRFEWGLITDIQPPELETRIAILRKKAAQDR-----LAVPGEVLEFIASRV 404 Query: 365 TTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 + REL+GA ++ S + + +A+ +L L+ ++ I + ++ ++ Sbjct: 405 EANIRELEGALIRVTAFASLNQQPVDSALAEIVLRDLIPDSHAPEITAPTIMGVTSEFFD 464 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 ++ +DL + + + RQ+AMYL + +T S P+IG+ FG RDHTTV+HA +K+ K + Sbjct: 465 VTLDDLCGPGKTKALATARQIAMYLCRELTDMSLPKIGQTFGGRDHTTVMHADKKIRKEM 524 Query: 484 ETDITLKKEVELLKRLISE 502 + +V+ L I + Sbjct: 525 AERRRIYDQVQELTSRIKQ 543 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 2/111 (1%) Query: 38 IFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 I+ V L + + P +W + + +L L+ P++F K I+ IT Sbjct: 11 IWEQVVRELSDGTLSPQQ-RAWMRVTRPIGLLDGTALLAAPSDFAKEAIERGLRGAITDA 69 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 R + + V S + T+ +P + Sbjct: 70 LSRRLGRAISLAVKVDSAEAVAPAPAPHYAPSPGRVENGTSPEPAPPMPAN 120 >gi|227500986|ref|ZP_03931035.1| DNA-directed DNA replication initiator protein [Anaerococcus tetradius ATCC 35098] gi|227216759|gb|EEI82157.1| DNA-directed DNA replication initiator protein [Anaerococcus tetradius ATCC 35098] Length = 459 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 142/474 (29%), Positives = 243/474 (51%), Gaps = 20/474 (4%) Query: 33 VNCESIFTIVSSRLKNQVGP-DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N E I + + +K V + +W LK ++ + ++L VP +I ++ Sbjct: 2 TNLEYITDELKNEMKMHVTDSQQFDTWISILKPLNLYNGTLYLEVPKKDTL-FIYDKIWA 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 ++ + G ++++ VA P + +S Sbjct: 61 PQLQIALDNIKSKTGKDLIIEVVAKDGDNYNKVLTLGKDYDPDGQ--------MRLNKVS 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ +F+ F+EG SN+ AL +Q++AE S+ NPLFI+ GLGKTH Sbjct: 113 SFPRPQLEEENIFANFVEGKSNQYALGVSQAVAENISNKSQARLYNPLFIYGESGLGKTH 172 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAIA+ + + + V+YL++E F SA+R ++ R++D+LLIDD+QF+ Sbjct: 173 LMQAIAHEILDNRDDAYVMYLSSEKFTNEMISALRSTKNEKFREKYRSVDILLIDDIQFI 232 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N L ++ KQ+V ++DRPP E++ L+ R+ SR G+ V +G D+E Sbjct: 233 AGKEGTQEEFFHTFNDLYNTGKQIVISSDRPPKEIKHLENRLISRFSWGIIVDIGKPDFE 292 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS--FAPIL 388 R +IL+ +L I ++L ++A + T+ R+L+GA + + I+ Sbjct: 293 TRVAILQKKLDQLGA-----YIENDILFYIAENIDTNIRDLEGALSTAIAYAKSDNREIV 347 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A + + V K++ I+DIQ+ VA Y + ++L R + +V PRQ+AM+L Sbjct: 348 TMEDAIKGVGTRVKDK-KKRVGIDDIQKYVADKYGVKLSELKGKSRKKEIVNPRQIAMFL 406 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 ++ + S I F DRDHTTV+H + K++K ++ D + K+E++ L + ISE Sbjct: 407 AREILEDSLVTISNAF-DRDHTTVMHGIDKIQKQMDEDGSFKEEIDALLKEISE 459 >gi|237753474|ref|ZP_04583954.1| chromosomal replication initiator protein dnaA [Helicobacter winghamensis ATCC BAA-430] gi|229375741|gb|EEO25832.1| chromosomal replication initiator protein dnaA [Helicobacter winghamensis ATCC BAA-430] Length = 434 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 131/471 (27%), Positives = 234/471 (49%), Gaps = 43/471 (9%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETI 93 ES +V +LKN++ P + ++ +L ++ + V L+ P F+ +W+K +Y I Sbjct: 2 ESPLHLVLLQLKNELTPFEFDNYISQLSYNEKYSRDDRVVLNAPNVFVASWVKTKYSNKI 61 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 LF+ + + V + K T Sbjct: 62 AHLFEIHSGFKPEIIVEVLNPNKKKDNKANIRKQNTA----------------------- 98 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L+ F F++FI G+SN A A+++A+ S Y NPL I+ + GLGKTHLL Sbjct: 99 --SNLNPSFTFTSFIVGNSNTFAFNVAKAVAQNQSTSY-----NPLVIYGNTGLGKTHLL 151 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI NA+I V+Y T+E F+ F IR+N ++ R D LLIDD+QFL G Sbjct: 152 NAIGNANI--IVGKNVIYTTSEQFLNDFLLHIRNNTMDRFREKYRACDYLLIDDIQFLSG 209 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K IQ EF H N L ++ KQ+V +DRPP ++ L+ R+++R G+ + + E + Sbjct: 210 KDQIQEEFFHTFNELKENHKQIVLTSDRPPKDMNGLEERLKTRFTSGLLADIQPPELETK 269 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTA 390 +I++ ++ E +++++ ++ +A + + RE++G +L F + I ++ Sbjct: 270 INIIR-----AKCELDGIHLSDSIINFIAANINDNIREIEGVLVKLNFSMNVTNIQEISL 324 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + ++L + + + +E I VAK+YN+ +D+ S R + +V R++ +YL++ Sbjct: 325 DFVKDILKEYIKES-KENIDMETIIETVAKYYNLKPSDIKSKSRSKNIVTARKIVIYLAR 383 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +TP S P + FG +DH+TV A++ ++ + + K +E +K I Sbjct: 384 TLTPNSMPYLANYFGMKDHSTVSKAMKSIQNEINENQNFKTIIEEIKNKIK 434 >gi|85374940|ref|YP_459002.1| chromosomal replication initiation protein [Erythrobacter litoralis HTCC2594] gi|84788023|gb|ABC64205.1| chromosomal replication initiator protein [Erythrobacter litoralis HTCC2594] Length = 488 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 164/496 (33%), Positives = 267/496 (53%), Gaps = 21/496 (4%) Query: 12 ENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI 71 + A++ D+ + VN + + +S L+ +G +++ W + ++ + Sbjct: 5 DGRAGAAKRNKKEDLMEDLEAVNLAADWADISQGLRKDLGHQLHSQWIKPIQLGAFDDET 64 Query: 72 VHL--SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT 129 L +PT F W+K+R+ + +T ++ I+ V I V P K Sbjct: 65 GTLDLFLPTEFSANWVKDRFADRLTLAWKIARGNIRNVNIQVH----PGRRKVPDIALGD 120 Query: 130 KLSPINTNISKSPIILGKQTISP---VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEV 186 P N ++ G I+ LD+ F+ FI G +N +A AAQ +A Sbjct: 121 GRRPANDGGDMGIMVNGPGVINDAGFTSSVGLDASLTFAAFITGETNILACNAAQRMA-- 178 Query: 187 DSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR 246 + +PL+I A G GKTHLL AI + + P R+ Y +AE FM F A++ Sbjct: 179 ---ATEQPQFSPLYIKAGTGQGKTHLLHAIGHQYLASHPRARIFYCSAERFMVEFVQALK 235 Query: 247 DNCALNLKDSLRNIDLLLIDDMQFLQGKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSEL 305 N + K LR+ DLLL+DD+QF+ GK Q E + ++ LL K++V AADR P L Sbjct: 236 ANQMIEFKARLRSFDLLLVDDIQFIIGKASAQEELLYTIDHLLAEGKRLVFAADRAPQAL 295 Query: 306 ESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVT 365 + ++PR+ SRL G+ + D E+R IL+++L L++ E+V+ +ART+T Sbjct: 296 DGVEPRLLSRLSMGLVADIQAADIELRKKILESKL----TRFAPLDVPEDVIEFLARTIT 351 Query: 366 TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNI 424 + REL G N+L+ +++ ++A+E L+ ++ + +++ I++IQR V + Y I Sbjct: 352 RNVRELVGGLNKLIAYAQLTGQVVSLQLAEEQLTDIL-SANRRRITIDEIQRTVCQFYRI 410 Query: 425 SRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLE 484 R+++ S RR R VVRPRQVAMYLSK++TPRS+PEIGR+FG RDH+TV+HAVR +E + + Sbjct: 411 DRSEMSSKRRARAVVRPRQVAMYLSKVLTPRSYPEIGRKFGGRDHSTVIHAVRLIEDLRQ 470 Query: 485 TDITLKKEVELLKRLI 500 D + +V L R + Sbjct: 471 RDADMDGDVRSLLRQL 486 >gi|239916572|ref|YP_002956130.1| chromosomal replication initiator protein DnaA [Micrococcus luteus NCTC 2665] gi|118706|sp|P21173|DNAA_MICLU RecName: Full=Chromosomal replication initiator protein DnaA gi|259645255|sp|C5C7X4|DNAA_MICLC RecName: Full=Chromosomal replication initiator protein DnaA gi|149848|gb|AAA25315.1| DNA biosynthesis initiation protein (dnaA) [Micrococcus luteus] gi|239837779|gb|ACS29576.1| chromosomal replication initiator protein DnaA [Micrococcus luteus NCTC 2665] Length = 515 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 139/484 (28%), Positives = 223/484 (46%), Gaps = 55/484 (11%) Query: 63 KFHSVLHNIVHLSVPTNFLKAWIK-----NRYLETITKLFQEEHSRIQGVEILVRSVALP 117 + ++ N + L+VP + ++ + + +T+ F+EE ++ ++ P Sbjct: 36 QPQGLIGNTLLLAVPNETTRETLQGTQVADALTDALTQEFREEILLAISIDANLQPPRTP 95 Query: 118 SVEKTASS--------------------------------------PSITKLSPINTNIS 139 S E SS P + N + Sbjct: 96 SSEARRSSLAGGPSGAAAPDVELPPAATAATSRRAVAEELPGFRIEPPADVVPAANAAPN 155 Query: 140 KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + + S L+ R+ F TF+ GSSNR A NPL Sbjct: 156 GNGKPTPAPPSTSAETSRLNDRYHFETFVIGSSNRF-----AHAAANAVAEAPAKAYNPL 210 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI+ GLGKTHLL AI + + + P LRV Y+ +E F F ++IR + + K RN Sbjct: 211 FIYGESGLGKTHLLHAIGHYARRLYPGLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRN 270 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D+LLIDD+QFL K EF H N+L ++ KQVV +D PP +L + R+RSR + Sbjct: 271 VDILLIDDIQFLADKEATVEEFFHTFNTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEW 330 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + D E R +IL+ + E L E L ++A ++T+ REL+GA ++ Sbjct: 331 GLITDIQPPDLETRIAILRK-----KAEAEGLVAPPEALEYIASRISTNIRELEGALIRV 385 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 S + E+A+ +L L+ ++ E I +++N++ +L S R RT Sbjct: 386 TAFASLNRQTVDIELAEHVLKDLITDETAHEITPELILHATGEYFNLTLEELTSKSRTRT 445 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ T+ +V L Sbjct: 446 LVTARQIAMYLLRELTEMSLPKIGQVLGGRDHTTVIHADRKIRELMAERRTIYNQVTELT 505 Query: 498 RLIS 501 I Sbjct: 506 NEIK 509 >gi|326778148|ref|ZP_08237413.1| Chromosomal replication initiator protein dnaA [Streptomyces cf. griseus XylebKG-1] gi|326658481|gb|EGE43327.1| Chromosomal replication initiator protein dnaA [Streptomyces cf. griseus XylebKG-1] Length = 608 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 196/373 (52%), Gaps = 21/373 (5%) Query: 133 PINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 P+ S +P + L+ +++F TF+ G+SNR A V Sbjct: 251 PMGAQPSPAPGPGEPH-------ARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAP 298 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPLFI+ GLGKTHLL AI + + P RV Y+++E F F ++IRD Sbjct: 299 AKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDT 358 Query: 253 LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + R++D+LL+DD+QFL K Q EF H N+L ++ KQ+V ++DRPP +L +L+ R Sbjct: 359 FRKRYRDVDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDR 418 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +R+R + G++ + + E R +IL+ + +LN EVL +A ++ + REL Sbjct: 419 LRNRFEWGLTTDVQPPELETRIAILRK-----KAVQEQLNAPPEVLEFIASRISRNIREL 473 Query: 372 DGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGET--KKMRIEDIQRMVAKHYNISRND 428 +GA ++ S + + + +L L+ GE ++ I A ++ ++ +D Sbjct: 474 EGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDD 533 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L + R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ ++ + Sbjct: 534 LCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRS 593 Query: 489 LKKEVELLKRLIS 501 + +V L I Sbjct: 594 IYNQVTELTNRIK 606 Score = 43.5 bits (101), Expect = 0.084, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 30/93 (32%) Query: 56 ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA 115 W +R + +++ + L+VP + K ++ R I++ E R + I V A Sbjct: 18 KQWIERCQPLALVADTALLAVPNEWGKRVLEGRLAPLISETLTRECGRPIRIAITVDDSA 77 Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 A + P + Sbjct: 78 GEPPAPPAPPMHQSHQGPQGHRYPSQQRDDAPR 110 >gi|182437493|ref|YP_001825212.1| chromosomal replication initiation protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|226735850|sp|B1VPF0|DNAA_STRGG RecName: Full=Chromosomal replication initiator protein DnaA gi|178466009|dbj|BAG20529.1| putative replication initiator protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 622 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 196/373 (52%), Gaps = 21/373 (5%) Query: 133 PINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 P+ S +P + L+ +++F TF+ G+SNR A V Sbjct: 265 PMGAQPSPAPGPGEPH-------ARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAP 312 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 NPLFI+ GLGKTHLL AI + + P RV Y+++E F F ++IRD Sbjct: 313 AKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDT 372 Query: 253 LKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 + R++D+LL+DD+QFL K Q EF H N+L ++ KQ+V ++DRPP +L +L+ R Sbjct: 373 FRKRYRDVDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDR 432 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 +R+R + G++ + + E R +IL+ + +LN EVL +A ++ + REL Sbjct: 433 LRNRFEWGLTTDVQPPELETRIAILRK-----KAVQEQLNAPPEVLEFIASRISRNIREL 487 Query: 372 DGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGET--KKMRIEDIQRMVAKHYNISRND 428 +GA ++ S + + + +L L+ GE ++ I A ++ ++ +D Sbjct: 488 EGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDD 547 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L + R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ ++ + Sbjct: 548 LCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRS 607 Query: 489 LKKEVELLKRLIS 501 + +V L I Sbjct: 608 IYNQVTELTNRIK 620 Score = 50.4 bits (119), Expect = 7e-04, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 40/119 (33%), Gaps = 5/119 (4%) Query: 34 NCESIFTIVSSRL----KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + + P W +R + +++ + L+VP + K ++ R Sbjct: 7 DLAAVWPRVLEQLLGEGQQGIEPKD-KQWIERCQPLALVADTALLAVPNEWGKRVLEGRL 65 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 I++ E R + I V A A + P + Sbjct: 66 APLISETLTRECGRPIRIAITVDDSAGEPPAPPAPPMHQSHQGPQGHRYPSQQRDDAPR 124 >gi|218767523|ref|YP_002342035.1| chromosomal replication initiation protein [Neisseria meningitidis Z2491] gi|14194677|sp|Q9JW45|DNAA_NEIMA RecName: Full=Chromosomal replication initiator protein DnaA gi|121051531|emb|CAM07828.1| putative chromosomal replication initiator protein [Neisseria meningitidis Z2491] gi|308389997|gb|ADO32317.1| putative chromosomal replication initiator protein [Neisseria meningitidis alpha710] gi|319409787|emb|CBY90095.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis WUE 2594] Length = 518 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 144/529 (27%), Positives = 244/529 (46%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPHGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEHS-----------------------------------------RIQGVEILV 111 I + +E + + E+ Sbjct: 60 IEAVREELAAGRSAFVFKPGEGVCYEMAAVEGAVEPAEPSLHAGSEEMPVQEVLLDELPS 119 Query: 112 RSVALPSVEKTASS---------PSITKLSPINTNISKSPIILGKQTISPV-------FG 155 P+ KTA+ P + + + + +S + +T + Sbjct: 120 EEPVKPAASKTAADILAERMRNLPHEPRQAAGSASRPESAAVAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|59800474|ref|YP_207186.1| putative chromosomal replication protein (DnaA) [Neisseria gonorrhoeae FA 1090] gi|254492913|ref|ZP_05106084.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 1291] gi|260441335|ref|ZP_05795151.1| chromosomal replication initiation protein [Neisseria gonorrhoeae DGI2] gi|268593985|ref|ZP_06128152.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 35/02] gi|268598163|ref|ZP_06132330.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae MS11] gi|268600507|ref|ZP_06134674.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID18] gi|268602740|ref|ZP_06136907.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID1] gi|268681289|ref|ZP_06148151.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID332] gi|268683460|ref|ZP_06150322.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-92-679] gi|268685766|ref|ZP_06152628.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-93-1035] gi|291044693|ref|ZP_06570402.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae DGI2] gi|293397795|ref|ZP_06642001.1| chromosomal replication initiator protein DnaA [Neisseria gonorrhoeae F62] gi|71151801|sp|Q5FAJ2|DNAA_NEIG1 RecName: Full=Chromosomal replication initiator protein DnaA gi|59717369|gb|AAW88774.1| putative chromosomal replication protein (DnaA) [Neisseria gonorrhoeae FA 1090] gi|226511953|gb|EEH61298.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 1291] gi|268547374|gb|EEZ42792.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae 35/02] gi|268582294|gb|EEZ46970.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae MS11] gi|268584638|gb|EEZ49314.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID18] gi|268586871|gb|EEZ51547.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID1] gi|268621573|gb|EEZ53973.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae PID332] gi|268623744|gb|EEZ56144.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-92-679] gi|268626050|gb|EEZ58450.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae SK-93-1035] gi|291011587|gb|EFE03583.1| chromosomal replication initiator protein dnaA [Neisseria gonorrhoeae DGI2] gi|291611741|gb|EFF40810.1| chromosomal replication initiator protein DnaA [Neisseria gonorrhoeae F62] Length = 518 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 144/529 (27%), Positives = 243/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPHGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEHS-----------------------------------------RIQGVEILV 111 I + +E + + E+ Sbjct: 60 IEAVREELAAGRPAFVFKPGEGVRYEMAAVEGAVEPAEPSLHAGSEEMPVQEVLLDELPS 119 Query: 112 RSVALPSVEKTASS---------PSITKLSPINTNISKSPIILGKQTISPV-------FG 155 P+ KTA+ P + + + +S + +T + Sbjct: 120 EKPVKPAASKTAADILAERMKNLPHEPRQAAGPASRPESAAVAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|119025019|ref|YP_908864.1| chromosomal replication initiation protein [Bifidobacterium adolescentis ATCC 15703] gi|154486346|ref|ZP_02027753.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis L2-32] gi|118764603|dbj|BAF38782.1| chromosomal replication initiator protein DnaA [Bifidobacterium adolescentis ATCC 15703] gi|154084209|gb|EDN83254.1| hypothetical protein BIFADO_00155 [Bifidobacterium adolescentis L2-32] Length = 499 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 130/492 (26%), Positives = 225/492 (45%), Gaps = 40/492 (8%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ + L + SW + + + + L VP+ + ++ + + + Sbjct: 16 VWSDALALLHQNPSLSVRD-KSWLENVYPEGMWGPTIMLCVPSEAAQQALQTELNKPLME 74 Query: 96 LFQEEHSRIQGVEILV----------------RSVALPSVEKTASSPSITKLSPINTNIS 139 +E + + R S K+ ++ ++ PI + Sbjct: 75 ALRESAEQDIFPAFKIVEMKPKTEEQPEETYPRFSPAKSPAKSPANETMQGQLPIPATMP 134 Query: 140 KSPIILGKQTISPVFG--SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 P+ + L+ F TF+ G SNR A T A ++AE H N Sbjct: 135 PEQDHFQSGQNRPLLDPETHLNKNATFDTFVPGDSNRFARTVALAVAEGSGHD-----FN 189 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-----NCALN 252 PL I+ GLGKTHLL AI N ++ + PNL+V Y+T+E F F A+ D Sbjct: 190 PLCIYGGSGLGKTHLLNAIGNYALVKDPNLKVRYVTSEEFTNEFIEALADTNQSSGQIKE 249 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 R +D+LLIDD+QFL GK +F H N+L + K++V A+D PP +L+ + R Sbjct: 250 FNRRYREVDVLLIDDIQFLSGKDATLEQFFHTFNTLHQANKRIVIASDVPPKDLQGFNER 309 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + SR + G++V + D E R +IL+ ++ NI +V +A T + REL Sbjct: 310 LISRFESGLTVDVKPPDLETRIAILRMIATMNGS-----NIPNDVFNLIAERFTENIREL 364 Query: 372 DGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 +GA N++ S +T +A++ L T +++ DI VAK++ ++ +D++ Sbjct: 365 EGALNRVTAMASLSNQPVTKALAEQTLQDFFTTDV--EIKPADIITQVAKYFYLTFDDIV 422 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 R + + RQ+AMYL + +T S +IG FG +DHTTV+HA ++ ++ + Sbjct: 423 GRSRTKKIALARQIAMYLVRELTSMSLNDIGLVFGGKDHTTVMHAYTRINDEMQEKQEIY 482 Query: 491 KEVELLKRLISE 502 V L + + Sbjct: 483 NYVTELTLQLKQ 494 >gi|320009750|gb|ADW04600.1| chromosomal replication initiator protein DnaA [Streptomyces flavogriseus ATCC 33331] Length = 580 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 118/390 (30%), Positives = 194/390 (49%), Gaps = 21/390 (5%) Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRV 175 P + P+ + P + L+ +++F TF+ G+SNR Sbjct: 206 QPQHRQGGPGTGRAGGGPMGNQSAPPPGTGEPH-------ARLNPKYLFDTFVIGASNRF 258 Query: 176 ALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 A V NPLFI+ GLGKTHLL AI + + P RV Y+++E Sbjct: 259 -----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSE 313 Query: 236 YFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQV 294 F F ++IRD + R++D+LL+DD+QFL K Q EF H N+L ++ KQ+ Sbjct: 314 EFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQI 373 Query: 295 VAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE 354 V ++DRPP +L +L+ R+R+R + G++ + + E R +IL+ + +LN Sbjct: 374 VLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIAILRK-----KAVQEQLNAPP 428 Query: 355 EVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKKMRI 411 EVL +A ++ + REL+GA ++ S + + + +L L+ ++ Sbjct: 429 EVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDSAPEITA 488 Query: 412 EDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTT 471 I A ++ ++ DL + R R +V RQ+AMYL + +T S P+IG +FG RDHTT Sbjct: 489 PAIMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTT 548 Query: 472 VLHAVRKVEKMLETDITLKKEVELLKRLIS 501 V+HA RK+ ++ ++ +V L I Sbjct: 549 VMHADRKIRALMAERRSIYNQVTELTNRIK 578 Score = 42.7 bits (99), Expect = 0.13, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 26/60 (43%) Query: 56 ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA 115 W +R + +++ + L+VP + K ++ R I++ E R + I V A Sbjct: 18 KQWIERCQPLALVADTALLAVPNEWGKRVLEGRLAPLISETLTRECGRPIRIAITVDDSA 77 >gi|58697378|ref|ZP_00372705.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] gi|58536223|gb|EAL59777.1| chromosomal replication initiator protein DnaA [Wolbachia endosymbiont of Drosophila simulans] Length = 345 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 141/352 (40%), Positives = 220/352 (62%), Gaps = 13/352 (3%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + GSPLD RF F F+ G N +A TAA+ +AE + NPLF++ VGLGKT Sbjct: 2 NHNLGSPLDPRFTFDNFVVGKPNELAFTAAKRVAESIDP---ILGSNPLFLYGGVGLGKT 58 Query: 211 HLLQAIANASIKRQPNLR--VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 HL+ AIA + P+ + VVYL+AE FM+++ +A+R + K+ R++D+L++DD+ Sbjct: 59 HLMHAIAWHIV-NSPSAKRKVVYLSAEKFMYQYITALRSKDIMLFKEQFRSVDVLMVDDV 117 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q EF H N+L+D KQ+V +ADR PS+L+ ++ RI+SRL G+ + Sbjct: 118 QFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINET 177 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 +E+R IL+ ++ E + + ++VL +AR + ++ REL+GA N++ Sbjct: 178 TFELRLGILQ-----AKVEQMNMYVPKDVLEFLARNIKSNIRELEGALNKVTHTSLIGRS 232 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +T E A E L L+ + + + IE+IQ+ VA+ +NI D+ SNRR+R++ RPRQ+AMY Sbjct: 233 MTVESASETLIDLLRSNH-RSVTIEEIQKKVAEFFNIKVADMQSNRRLRSLARPRQIAMY 291 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 +K T +S P+IGR FG RDH TV+HAV++VE ++TD E+ LK++ Sbjct: 292 FAKKFTQKSLPDIGRNFGGRDHATVIHAVKQVENFIKTDSKFADEINRLKKM 343 >gi|328883703|emb|CCA56942.1| Chromosomal replication initiator protein DnaA [Streptomyces venezuelae ATCC 10712] Length = 591 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 116/350 (33%), Positives = 189/350 (54%), Gaps = 14/350 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ +++F TF+ GSSNR A V NPLFI+ GLGKTHLL A Sbjct: 250 ARLNPKYLFDTFVIGSSNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHA 304 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 305 IGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYRDVDILLVDDIQFLASKE 364 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R + Sbjct: 365 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIA 424 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 425 ILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLT 479 Query: 394 DELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + +L L+ + ++ I A ++ ++ DL + R R +V RQ+AMYL + Sbjct: 480 EIVLKDLIPGGEDSSPEITAPAIMAATADYFGLTVEDLCGSSRSRVLVTARQIAMYLCRE 539 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 540 LTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 589 Score = 48.5 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 5/83 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYAS----WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + G + W +R + +++ + L+VP + K ++ R Sbjct: 7 DLAAVWPRVLEQLLAE-GQQGIEAKDKQWIERCQPLALVADTALLAVPNEWGKRVLEGRL 65 Query: 90 LETITKLFQEEHSRIQGVEILVR 112 I++ E R + I V Sbjct: 66 APLISETLSRECGRPIRIAITVD 88 >gi|118587493|ref|ZP_01544918.1| initiation of chromosome replication [Oenococcus oeni ATCC BAA-1163] gi|118432143|gb|EAV38884.1| initiation of chromosome replication [Oenococcus oeni ATCC BAA-1163] Length = 466 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 150/465 (32%), Positives = 231/465 (49%), Gaps = 35/465 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFL-KAWIKNRYLETITKLFQ 98 + R +G Y +W + ++ V + V L P++ + +AW Y + Sbjct: 31 IQGRFAANMGETAYENWIKPVRAVKVDLANRTVELQAPSDIVMQAWDNGNYTAKFMEYAY 90 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + E+ V V V S+ S L Sbjct: 91 DVAHDFFKPELKVIKVVANPVNNQKSNQSNGNFVAT--------------------DYQL 130 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + F F T++ G +N +A +AA +++E Y NPL I+ S GLGKTHL++AI N Sbjct: 131 NQNFTFDTWVIGDANELATSAAMAVSEQPGRQY-----NPLLIYGSSGLGKTHLMEAIGN 185 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + QP+ V Y+T + FM + +AI + + N+DLLL+DD+Q LQGK Q Sbjct: 186 RLKELQPDAIVRYITTDDFMNDWVNAISKKTTTDFTSTYENVDLLLVDDIQMLQGKDRFQ 245 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF ++ N + S KQ+V +D P ++ L+ R+ SR GV+ + D+ R +ILK Sbjct: 246 EEFFNIFNKITKSQKQIVMTSDVLPKDIPGLNARLVSRFMQGVAYDIQKPDFPTRLAILK 305 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELL 397 N + E+ ++I+ + L +A + T+ REL+GAFN L + A ++L Sbjct: 306 N-----KSEEVGISIDNQTLTLIAEQIDTNVRELEGAFNTLTLMARAGRPINVSNAQKIL 360 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 HL N K + + DIQ+ VA YN+S NDL+ +R +V PRQVAMYL + +T S Sbjct: 361 EHL-NITRQKVITLPDIQKTVADDYNVSINDLIGKKRNSDIVLPRQVAMYLIRTLTDTSL 419 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P+IG+ FG RDHTTV+H K+ ++ETD LK+ +E L I E Sbjct: 420 PKIGQAFGGRDHTTVMHGTEKIADLIETDYALKQRIENLSTKIKE 464 >gi|15677734|ref|NP_274897.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis MC58] gi|14194678|sp|Q9JXS7|DNAA_NEIMB RecName: Full=Chromosomal replication initiator protein DnaA gi|7227160|gb|AAF42233.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis MC58] gi|316985519|gb|EFV64466.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis H44/76] gi|325133542|gb|EGC56205.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M13399] gi|325206810|gb|ADZ02263.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M04-240196] Length = 518 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 145/529 (27%), Positives = 241/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEH----------------------SRIQGVEILVRSVAL-------------- 116 I + +E ++ E + +V+ Sbjct: 60 IEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHAVSEGMPVQEVLLDELPS 119 Query: 117 -PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF--------------------G 155 V+ AS + L+ N+ P P Sbjct: 120 EEPVKPAASKTAADILAERMKNLPHEPRQAAGSASRPESVAVAKARTDVQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|121634189|ref|YP_974434.1| putative chromosomal replication initiator protein [Neisseria meningitidis FAM18] gi|166214686|sp|A1KS02|DNAA_NEIMF RecName: Full=Chromosomal replication initiator protein DnaA gi|120865895|emb|CAM09631.1| putative chromosomal replication initiator protein [Neisseria meningitidis FAM18] gi|325131541|gb|EGC54248.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M6190] gi|325135494|gb|EGC58112.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M0579] gi|325139204|gb|EGC61750.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis ES14902] gi|325197601|gb|ADY93057.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis G2136] gi|325201462|gb|ADY96916.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240149] gi|325207443|gb|ADZ02895.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis NZ-05/33] Length = 518 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 145/529 (27%), Positives = 240/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEH----------SRIQGVEILVRSVALPSVEKTASS---------------PS 127 I + +E E+ A+ E + + PS Sbjct: 60 IEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHAGSEEMPVQEVLLDELPS 119 Query: 128 ITKLSPINT------------NISKSPIILGKQTISPVFG-------------------- 155 + P + N+ P + P Sbjct: 120 EEPVKPAASKTAADILAERMKNLPHEPRHTAEPASRPESEVLAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|309807844|ref|ZP_07701776.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 01V1-a] gi|308168946|gb|EFO71032.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 01V1-a] Length = 436 Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 139/458 (30%), Positives = 228/458 (49%), Gaps = 28/458 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI--VHLSVPTNFLKAWIKNRYL 90 ++ E + + +K + Y +WF+ K S N + +SV + K + + Sbjct: 2 LDLEKFWQFFTDNMKKRYSEVAYNAWFKNTKPLSFDKNSKQMTISVESPVSKGYWEKNLA 61 Query: 91 ET-ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I + + I + K A + + T + P+I Sbjct: 62 SQLIQEAYAYTDMEIIPI------------FKIAGDTNSERFVVHKTQKKQEPVIENNHN 109 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGK Sbjct: 110 -EFAKDLQLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGK 163 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD+Q Sbjct: 164 THLMQAIGHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQ 223 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F K IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D Sbjct: 224 FFAKKEGIQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPD 283 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI- 387 E R +IL+ + E L I++ L +VA V T+ REL+GA ++ + Sbjct: 284 LETRIAILRK-----KAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQAHATIERED 338 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + +A E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PRQ+AMY Sbjct: 339 INLNLAKEALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMY 398 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 LS+ +T S P+IG+ FG +DHTTV+HA K K+ + Sbjct: 399 LSRKLTDSSLPKIGQEFGGKDHTTVMHAYEKNRKISKN 436 >gi|167770836|ref|ZP_02442889.1| hypothetical protein ANACOL_02189 [Anaerotruncus colihominis DSM 17241] gi|167666876|gb|EDS11006.1| hypothetical protein ANACOL_02189 [Anaerotruncus colihominis DSM 17241] Length = 439 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 229/468 (48%), Gaps = 37/468 (7%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 +F +V KNQ+ + W + + + + L V + F I+ +Y + Sbjct: 6 ELFALVLDLCKNQISDVAFNLWLKDIIPLRLEGSAAFLQVNSEFKMNIIREKYTSILKSA 65 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 F+ V++++ EK A P + Sbjct: 66 FETTLGFP--VDVIITCETPQPAEKPAGPPPSDAAAVNGEY------------------- 104 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 + F TFI GSSN+ A A+ ++A ++ Y NPLFI+ GLGKTHLL AI Sbjct: 105 ----DYTFDTFIVGSSNKFAHAASLAVAANPANAY-----NPLFIYGGSGLGKTHLLYAI 155 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 K +PN ++Y+ + F +AIRD ++ R D+LL+DD+QF+ GK Sbjct: 156 CAEIRKNRPNYNIIYVKGDEFANDIITAIRDQRTAEFRERYRKADVLLVDDIQFIGGKES 215 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q EF H N+L +S KQ+V A+DRPP E+++L+ R+R+R + G+ + + D+E R +I Sbjct: 216 TQEEFFHTFNTLYESNKQIVLASDRPPKEIKTLEDRLRTRFEWGLLADIQIPDFETRIAI 275 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-TAEIAD 394 ++ + + + + ++V ++A + T+ R+L+G +L + IA Sbjct: 276 IRR-----KAQLLDIQMPDDVAEYIANRLKTNIRQLEGTVKKLKAYKLLQGTNPSIMIAQ 330 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 + ++N + + +E I V + Y IS D+ SN+R + RQ+++Y+ + +T Sbjct: 331 NAIRDILNDNQPVPVTVERIISEVGRTYGISPQDIRSNKRSAQISAARQISIYIVREITQ 390 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S IG FG RDH+T+++A+++VEK + D+ K+ +E + + I + Sbjct: 391 MSMSTIGDEFGGRDHSTIVYAIQQVEKNMNNDLRYKETIEDIIKNIRD 438 >gi|254804280|ref|YP_003082501.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha14] gi|254667822|emb|CBA03812.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha14] gi|261393234|emb|CAX50857.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis 8013] gi|325204854|gb|ADZ00308.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis M01-240355] Length = 518 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 145/529 (27%), Positives = 241/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEH----------------------SRIQGVEILVRSVAL-------------- 116 I + +E ++ E + +V+ Sbjct: 60 IEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHAVSEGMPVQEVLLDELPS 119 Query: 117 -PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-------------------- 155 V+ AS + L+ N+ P P Sbjct: 120 EEPVKPAASKTAADILAERMKNLPHEPRHTAGSASRPESEVLAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|313886600|ref|ZP_07820313.1| chromosomal replication initiator protein DnaA [Porphyromonas asaccharolytica PR426713P-I] gi|312923956|gb|EFR34752.1| chromosomal replication initiator protein DnaA [Porphyromonas asaccharolytica PR426713P-I] Length = 475 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 134/476 (28%), Positives = 238/476 (50%), Gaps = 24/476 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + L+ + P+VY +WF +K S++ + L VP+ F +I+ ++ + ++ Q Sbjct: 11 WSECTVLLQAMIQPEVYNAWFPHIKPVSLIGVEMTLGVPSQFFCEYIETHFINELKQVLQ 70 Query: 99 EEHSR--IQGVEILVRS---------VALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + + LV S V LP+ +++ IN N + + + Sbjct: 71 RIVGPNVVLKYKALVDSAASHRKNSSVTLPTQSYASNAYGAAGAYTINANGAAAALKTEP 130 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + P F S L + F T+ +G SNR A + A+SIAE G LNP FI+ G+ Sbjct: 131 RQL-PDFDSQLKPQLSFDTYYQGESNRTASSIARSIAEKPGQG----ALNPCFIYGPSGV 185 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL AI + P L+V+Y+++ F ++ +A R N + + + +D+LLIDD Sbjct: 186 GKTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVLLIDD 245 Query: 268 MQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +Q + K Q F + N L KQ+V +D P L L+ R+ SR+ G +++ + Sbjct: 246 IQGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTIEVER 305 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DY++R L++ + E+ + +E++ ++ARTVT+S R L G F L+ R + Sbjct: 306 PDYDLRREYLRH-----KSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLITRAAVEG 360 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T+ +++S V E K++ + I++ V ++Y++ + S R V + RQ+ Sbjct: 361 CDVTSSFVKKIVSQTVK-QEKKEITVSMIEKTVCEYYHVPIELVRSRSRKADVAQARQMI 419 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MY +K T +S IG G R H TVLH+ + VE E + ++ ++ LI Sbjct: 420 MYFAKRYTDQSLSAIGELLGGRSHATVLHSCKVVEDQAEVSTAYRSDLNAIESLIK 475 >gi|84394505|ref|ZP_00993215.1| chromosomal replication initiation protein [Vibrio splendidus 12B01] gi|84374858|gb|EAP91795.1| chromosomal replication initiation protein [Vibrio splendidus 12B01] Length = 414 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 126/425 (29%), Positives = 222/425 (52%), Gaps = 28/425 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 S++ +L+ ++ ++ W + L+ + N + L P F+ W++++YL +I Sbjct: 2 SSSLWLQCLQQLQEELPATEFSMWVRPLQA-ELNGNTLTLFAPNRFVLDWVRDKYLNSIN 60 Query: 95 KLFQEEHSRIQG---VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ--- 148 +L QE EI + V P E A + + T + + + + K Sbjct: 61 RLLQEYCGNDIPHLHFEIGSKRVIAPRSEAIAPARTRTAADVAAESSAPAQLQARKPVHN 120 Query: 149 --------TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + S ++ + F+ F+EG SN++ L AA+ +++ Y NPLF Sbjct: 121 IWRDEEPVAVDLNHRSNVNPKHKFNNFVEGKSNQLGLAAARQVSDNPGTAY-----NPLF 175 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 ++ GLGKTHLL A+ NA + +PN +VVY+ +E F+ A+++N K R++ Sbjct: 176 LYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMVKALQNNAIEEFKRYYRSV 235 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ R++SR G Sbjct: 236 DALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVEDRLKSRFGWG 295 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + + E R +IL + + ED ++++ +EV +A+ + ++ REL+GA N+++ Sbjct: 296 LTVAIEPPELETRVAIL-----MKKAEDHQIHLADEVAFFIAKRLRSNVRELEGALNRVI 350 Query: 380 FRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +F +T + E L L+ K + I++IQ+ VA++Y I DLLS RR R+V Sbjct: 351 ANANFTGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKVADLLSKRRSRSV 409 Query: 439 VRPRQ 443 RPRQ Sbjct: 410 ARPRQ 414 >gi|259508311|ref|ZP_05751211.1| chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] gi|259164129|gb|EEW48683.1| chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] Length = 566 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 197/361 (54%), Gaps = 12/361 (3%) Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 I +P L+ ++ F F+ G NR A AA ++AE + NPLFI Sbjct: 211 IPRETPAHNPNREVSLNPKYTFENFVIGPFNRFANAAAVAVAESPAKA-----FNPLFIS 265 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A+ N + + QP LR+ Y+++E F + +++RD+ + K RN+D+ Sbjct: 266 GGSGLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRNLDI 325 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 L++DD+QFL GK Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ Sbjct: 326 LMVDDIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSDRPPRQLTTLEDRLRTRFEGGLI 385 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + D E R +IL + + + +++ EVL +A +S REL+GA ++ Sbjct: 386 TDIQPPDLETRIAIL-----MKKAQADGTHVDREVLELIASRFESSIRELEGALIRVSAY 440 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + E+A L ++ E ++ I + A+++ IS + L + R V Sbjct: 441 SSLINQPIDKEMAIVALRDILPEPEDMEITAPVIMEVTAEYFKISVDTLRGAGKTRAVAH 500 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL + +T S P+IG FG +DHTTV++A RK+ + + E++ L +LI Sbjct: 501 ARQLAMYLCRELTDMSLPKIGDVFGGKDHTTVMYADRKIRQEMTEKRDTYDEIQQLTQLI 560 Query: 501 S 501 Sbjct: 561 K 561 >gi|25026557|ref|NP_736611.1| chromosomal replication initiation protein [Corynebacterium efficiens YS-314] gi|38257617|sp|Q8FUL7|DNAA_COREF RecName: Full=Chromosomal replication initiator protein DnaA gi|23491836|dbj|BAC16811.1| putative chromosomal replication initiator protein DnaA [Corynebacterium efficiens YS-314] Length = 573 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 120/361 (33%), Positives = 197/361 (54%), Gaps = 12/361 (3%) Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 I +P L+ ++ F F+ G NR A AA ++AE + NPLFI Sbjct: 218 IPRETPAHNPNREVSLNPKYTFENFVIGPFNRFANAAAVAVAESPAKA-----FNPLFIS 272 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 GLGKTHLL A+ N + + QP LR+ Y+++E F + +++RD+ + K RN+D+ Sbjct: 273 GGSGLGKTHLLHAVGNYAQELQPGLRIKYVSSEEFTNDYINSVRDDRQESFKRRYRNLDI 332 Query: 263 LLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 L++DD+QFL GK Q EF H N+L + KQ++ ++DRPP +L +L+ R+R+R +GG+ Sbjct: 333 LMVDDIQFLAGKEGTQEEFFHTFNALHQAEKQIILSSDRPPRQLTTLEDRLRTRFEGGLI 392 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 + D E R +IL + + + +++ EVL +A +S REL+GA ++ Sbjct: 393 TDIQPPDLETRIAIL-----MKKAQADGTHVDREVLELIASRFESSIRELEGALIRVSAY 447 Query: 382 HSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + E+A L ++ E ++ I + A+++ IS + L + R V Sbjct: 448 SSLINQPIDKEMAIVALRDILPEPEDMEITAPVIMEVTAEYFKISVDTLRGAGKTRAVAH 507 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 RQ+AMYL + +T S P+IG FG +DHTTV++A RK+ + + E++ L +LI Sbjct: 508 ARQLAMYLCRELTDMSLPKIGDVFGGKDHTTVMYADRKIRQEMTEKRDTYDEIQQLTQLI 567 Query: 501 S 501 Sbjct: 568 K 568 >gi|322388480|ref|ZP_08062083.1| DNA-directed DNA replication initiator protein [Streptococcus infantis ATCC 700779] gi|321140793|gb|EFX36295.1| DNA-directed DNA replication initiator protein [Streptococcus infantis ATCC 700779] Length = 453 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 146/471 (30%), Positives = 233/471 (49%), Gaps = 27/471 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + + K ++ ++ + + V NI + +P ++ ++ + + Sbjct: 5 KQFWNQILELAKERLTRSMFDFYATPAELIKVEGNIATIFLP----RSEMEMVWSTKLND 60 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + +I EI + V T+ S + S K I P Sbjct: 61 IIVAVGFQIYDTEIKAQYVLTKEDSNTSDIASNVENSNHQQEEIKKSI--------PYSE 112 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F FI+G N A +AA +++E Y NPLFI+ GLGKTHLL A Sbjct: 113 TGLRDIYTFDNFIQGDGNIWAKSAALAVSEDPGLTY-----NPLFIYGGPGLGKTHLLNA 167 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + N +K+ PN RV Y+ AE F+ F +R N N K + R++DLLLIDD+Q L G Sbjct: 168 LGNEILKKNPNARVKYIPAESFINEFLDHLRLNDMDNFKKTYRSLDLLLIDDIQSLSGNK 227 Query: 276 --IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + N L + KQ+V +DR P +LE+L R+ +R G++ + D+E R Sbjct: 228 VQTQDEFFNTFNKLHSNNKQIVLTSDRRPEQLENLPERLVTRFSWGLTTDITPPDFETRI 287 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAE 391 +IL S+ ED + + + ++A ++ REL+GA + I +T + Sbjct: 288 AILN-----SKTEDLDYHFQPDTIEYLAGQFDSNVRELEGALKDISLMAKVKQINTITVD 342 Query: 392 IADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 IA E + + T + IE IQ V K Y++S ++ RRV +V RQVAMYL++ Sbjct: 343 IASEAIRARKQSVSTMIVIPIEKIQEEVGKFYDVSVKEMKGTRRVLNIVLARQVAMYLAR 402 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG+ FG +DHTTV+HA K++ M+ETD L+ E+E +K+ I Sbjct: 403 ELTDNSLPKIGKEFGGKDHTTVIHAHAKIKSMIETDDKLRIEIETIKKKIK 453 >gi|300726801|ref|ZP_07060231.1| chromosomal replication initiator protein DnaA [Prevotella bryantii B14] gi|299775914|gb|EFI72494.1| chromosomal replication initiator protein DnaA [Prevotella bryantii B14] Length = 469 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 124/473 (26%), Positives = 226/473 (47%), Gaps = 15/473 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNR 88 ++V+ ++++ + + V + Y +WF+ + F S L +P+ F +++ Sbjct: 1 MQVSPKALWDNSLTLIAENVTLEQYNTWFKPIVFESYNQATKTLLLNIPSTFFYEYLEAN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSV-ALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 Y++ +TK+ + + V V P+ + + PS P ++ + + Sbjct: 61 YVDLLTKVLTRTFGQGVRLNYRVVVVKNPPTTQNIEADPSDQAPKPQSSLETNQAPSVSD 120 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 S L++R F ++EG SN++ T SIAE + NP FI+ G Sbjct: 121 AAKPQDIPSHLNNRLTFDNYLEGESNKLTRTVGVSIAEHP----YNSQFNPFFIYGPSGC 176 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI K P+ RV+Y++A+ F ++ A+ +N + + ID L+IDD Sbjct: 177 GKTHLVNAIGLKIKKLYPDSRVLYISAKLFSVQYTQAVLENHTNDFIAFYQTIDTLIIDD 236 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +Q GK F H+ N L + K+++ A DRPP L + R+ +R G+ + Sbjct: 237 VQEWMGKTKTLETFFHIFNHLFRNNKRIILACDRPPVSLTGMPDRMLTRFSCGLIAEMEK 296 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FA 385 + ++ I+K+ + L+I+++VL ++A+ S R+L G NQL+ + Sbjct: 297 PNVQLCIDIMKH-----KMRRDGLDIHDDVLTYIAQNANCSVRDLQGTINQLLAYSIVYN 351 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + ++A + V + + ++DI V HYN++ ++ S R R V RQV+ Sbjct: 352 SKIDIKLAKRCIERAVKVD-DRPLTVDDILEQVCNHYNVTSTNINSRSRKREYVIARQVS 410 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 MYL + T IG G RDH+TV+H+ +VE L+TD E++ ++ Sbjct: 411 MYLCQKYTKMPASRIGMLVGKRDHSTVVHSCNQVETRLKTDKKFFDEIQSIEN 463 >gi|282891915|ref|ZP_06300394.1| hypothetical protein pah_c200o074 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498175|gb|EFB40515.1| hypothetical protein pah_c200o074 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 448 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 131/470 (27%), Positives = 231/470 (49%), Gaps = 31/470 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + ++ + +K + +W +K + L VP F+K ++ + Y + + Sbjct: 5 DTQNAWDQFLKYVKGHCSAAAFGNWLAPIKVLESTAEEITLEVPNVFVKEYLLSNYKKEL 64 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 F V + P +E +P + + P+ Q+ Sbjct: 65 KLFFP------------VTTTGEPQIEFVVVAPEKKSAAIPTPTVDHHPVQQNAQS---- 108 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 L+ + F TFIEG +N +AA +A Y N LFIH VGLGKTH+L Sbjct: 109 HEVKLNENYRFETFIEGPTNMFVKSAAIGVATRPGQSY-----NLLFIHGGVGLGKTHIL 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQ 272 +I + LRV +T E F+ ++R+ +K R+ +D+LL+DD+QFLQ Sbjct: 164 HSIGHYVKDHHKKLRVQCITTEAFINDLVDSLRNKSVDKMKRFYRSDVDVLLVDDIQFLQ 223 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 +L + EFCH +L++ KQ+V +D+PPS+L+ L R+ +R++ G+ +G+ D E Sbjct: 224 NRLNFEEEFCHTFETLINQKKQIVITSDKPPSQLK-LSERLIARMEWGLVAHVGMPDLET 282 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +IL++ + + L I V +A + + R+L+GA N+L + +T Sbjct: 283 RVAILQH-----KAQQKGLEIPNNVAFFIAEHIYNNVRQLEGAVNRLCAHCKLLDLNITE 337 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+ ++ L ++ KK+ +E I + VA + + NDL + R + + PRQVAMYL+ Sbjct: 338 ELVEKTLREMMQQAPNKKISVEQILKSVATVFQVRVNDLKGSTRTKDIALPRQVAMYLAY 397 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 M S +G FG + H+T+LHA + +EK + T+ L++++ +++R I Sbjct: 398 KMINESLQMLGASFG-KTHSTILHACKTIEKKVATNEILRRQIGMVERNI 446 >gi|325127478|gb|EGC50407.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis N1568] Length = 518 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 145/529 (27%), Positives = 240/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPHGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEH----------SRIQGVEILVRSVALPSVEKTASS---------------PS 127 I + +E E+ A+ E + + PS Sbjct: 60 IEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHAGSEEMPVQEVLLDELPS 119 Query: 128 ITKLSPINT------------NISKSPIILGKQTISPVFG-------------------- 155 + P + N+ P + P Sbjct: 120 EEPVKPAASKTAADILAERMKNLPHEPRHTAEPASRPESEVLAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|209558588|ref|YP_002285060.1| chromosomal replication initiation protein [Streptococcus pyogenes NZ131] gi|226735856|sp|B5XIP2|DNAA_STRPZ RecName: Full=Chromosomal replication initiator protein DnaA gi|209539789|gb|ACI60365.1| Chromosomal replication initiator protein dnaA [Streptococcus pyogenes NZ131] Length = 451 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 143/479 (29%), Positives = 243/479 (50%), Gaps = 36/479 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + N + + V ++Q+ Y + + V +I + YL Sbjct: 1 MTENEQIFWNRVLELAQSQLKQATYEFFVHDARLLKVDKHIATI--------------YL 46 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + + +LF E++ + ++++ + + + + I N +K +Q + Sbjct: 47 DQMKELFWEKNLK----DVILTAGFEVYNAQISVDYVFEEDLMIEQNQTKINQKPKQQAL 102 Query: 151 S--PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + P S L+S++ F FI+G NR A+ A+ ++A Y NPLFI GLG Sbjct: 103 NSLPTVTSDLNSKYSFENFIQGDENRWAVAASIAVANTPGTTY-----NPLFIWGGPGLG 157 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLL AI N+ + PN R+ Y+TAE F+ F IR + LK+ RN+DLLLIDD+ Sbjct: 158 KTHLLNAIGNSVLLENPNARIKYITAENFINEFVIHIRLDTMDELKEKFRNLDLLLIDDI 217 Query: 269 QFLQGKL---IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 Q L K Q EF + N+L ++ KQ+V +DR P L L+ R+ +R + G++V + Sbjct: 218 QSLAKKTLSGTQEEFFNTFNALHNNNKQIVLTSDRTPDHLNDLEDRLVTRFKWGLTVNIT 277 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL N + ++ ++ + ++A ++ R+L+GA + +F Sbjct: 278 PPDFETRVAILTN-----KIQEYNFIFPQDTIEYLAGQFDSNVRDLEGALKDISLGANFK 332 Query: 386 PI--LTAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 I +T +IA E + G + IE+IQ K Y ++ ++ + +R + +V R Sbjct: 333 QIDTITVDIAAEAIRARKQDGPKMTVIPIEEIQAQGGKFYGVTGKEIKATKRTQNIVLAR 392 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAM+L++ MT S P+IG+ FG RDH+TVLHA K++ M+ D +L+ E+E +K I Sbjct: 393 QVAMFLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMISQDESLRIEIETIKNKIK 451 >gi|317401672|gb|EFV82297.1| chromosomal replication initiator protein dnaA [Achromobacter xylosoxidans C54] Length = 372 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 123/350 (35%), Positives = 192/350 (54%), Gaps = 14/350 (4%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L++ F F+ G +N++A AA +AE Y NPLF++ VGLGKTHL+ Sbjct: 33 RSRLNTDLTFENFVTGKANQLARAAALQVAENPGTSY-----NPLFLYGGVGLGKTHLIH 87 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI NA + +RV Y+ A+ ++ A + + K ++DLLLIDD+QF GK Sbjct: 88 AIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQFFSGK 147 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF + +++ KQ++ +D P EL +D R+ SR G++V + + EMR Sbjct: 148 NRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRV 207 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP--ILTAE 391 +IL + + E + + EEV +A+ + ++ REL+GA +++ F +LT + Sbjct: 208 AIL-----LRKAESEGVPMPEEVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVD 262 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + E L L++ ++ +E+IQ+ VA Y I D+ S RR + PRQVAMYL+K Sbjct: 263 VCKEALKDLLSVSNG-QITVENIQKTVADFYKIKVADMYSKRRPANIALPRQVAMYLAKE 321 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T +S PEIG FG RDHTTVLHAVRK+ L + +L++ + Sbjct: 322 LTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQAELNHTLHVLEQTLK 371 >gi|225020863|ref|ZP_03710055.1| hypothetical protein CORMATOL_00871 [Corynebacterium matruchotii ATCC 33806] gi|305681620|ref|ZP_07404426.1| chromosomal replication initiator protein DnaA [Corynebacterium matruchotii ATCC 14266] gi|224946345|gb|EEG27554.1| hypothetical protein CORMATOL_00871 [Corynebacterium matruchotii ATCC 33806] gi|305658780|gb|EFM48281.1| chromosomal replication initiator protein DnaA [Corynebacterium matruchotii ATCC 14266] Length = 594 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 208/381 (54%), Gaps = 14/381 (3%) Query: 124 SSPSITKLSPINTNISKSPI-ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 + + ++P +++ + K +P L+ R+ F T++ SN++ +AA + Sbjct: 220 TDQADNPVTPQPATTARATLRSREKPAHNPAQDDSLNPRYTFDTYVVSDSNKLPTSAAIA 279 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +AE + Y NPLF+ GLGKTHL+ AI N + + PNLR+ Y+++E F + Sbjct: 280 VAEKPARAY-----NPLFVWGDSGLGKTHLMHAIGNYAQQLDPNLRIKYVSSEQFTNDYI 334 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRP 301 +++RD+ + K RN+D+L++DD+QFLQGK Q EF H N+L KQ+V ++DRP Sbjct: 335 NSVRDDRQESFKRRYRNLDILMVDDIQFLQGKEGTQEEFFHTFNALQQGGKQIVLSSDRP 394 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P +L +L+ R+R+R Q G+ + D E R +IL + + E ++ + +VL +A Sbjct: 395 PKQLTTLEDRLRTRFQSGLIADIYPPDLETRIAIL-----MKKAEAEQIVASRDVLELIA 449 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 ++S REL+GAF ++ S + + A++ L L+ ++ + I M A+ Sbjct: 450 SQFSSSIRELEGAFIRVSAWASLNNQQINLKTAEQALEDLMPEHSVLEVTTDTIMAMTAE 509 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 + + L + R + RQ+AMYL + +T S P++G RFG RDHTTV+H+ RK+ Sbjct: 510 FFGFTIAQLSGTSKSRPITHARQIAMYLCRELTELSLPKVGERFG-RDHTTVMHSERKIR 568 Query: 481 KMLETDITLKKEVELLKRLIS 501 K L E++ + +I Sbjct: 569 KELAEKRDTYDEIQKITTMIK 589 Score = 39.6 bits (91), Expect = 1.2, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 2/113 (1%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 +GP ++ + +L + L+VP+ K +++ I + R + + Sbjct: 36 IGPQQ-RAYLNLARLIGLLDGVAVLAVPSAKAKEYLEGNLYGVICMALSNKFGREYSLAV 94 Query: 110 LVR-SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 V ++ E S + ++ I T S G T + +P +SR Sbjct: 95 TVNPTIGKRRDEPEESEDAEQQMLDIATPTSGGRGSRGATTKTAARKTPRNSR 147 >gi|11132615|sp|Q9ZH75|DNAA_STRCH RecName: Full=Chromosomal replication initiator protein DnaA gi|3800785|gb|AAD08807.1| DNA replication initiator protein [Streptomyces anulatus] Length = 624 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 117/350 (33%), Positives = 191/350 (54%), Gaps = 14/350 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ +++F TF+ G+SNR A V NPLFI+ GLGKTHLL A Sbjct: 283 ARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHA 337 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 338 IGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKE 397 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R + Sbjct: 398 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIA 457 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 458 ILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLT 512 Query: 394 DELLSHLVNTGET--KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + +L L+ GE ++ I A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 513 EIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDDLCGSSRTRVLVTARQIAMYLCRE 572 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 573 LTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 622 Score = 49.7 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 5/86 (5%) Query: 34 NCESIFTIVSSRL----KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + + P W +R + +++ + L+VP + K ++ R Sbjct: 7 DLAAVWPRVLEQLLGEGQQGIEPKD-KQWIERCQPLALVADTALLAVPNEWGKRVLEGRL 65 Query: 90 LETITKLFQEEHSRIQGVEILVRSVA 115 I++ E R + I V A Sbjct: 66 APLISETLTRECGRPIRIAITVDDSA 91 >gi|302535573|ref|ZP_07287915.1| chromosomal replication initiator protein DnaA [Streptomyces sp. C] gi|302444468|gb|EFL16284.1| chromosomal replication initiator protein DnaA [Streptomyces sp. C] Length = 599 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 198/387 (51%), Gaps = 15/387 (3%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVF-GSPLDSRFVFSTFIEGSSNRVALT 178 + PS T G T P+ + L+ +++F TF+ G+SNR Sbjct: 221 PQQYEQPSPRPAPGRPTPAPPPSAPSGGSTSGPLEPTARLNPKYLFDTFVIGASNRF--- 277 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 A V NPLF++ GLGKTHLL AI + + P RV Y+++E F Sbjct: 278 --AHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFT 335 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 F ++IRD + R +D+LL+DD+QFL K Q EF H N+L ++ KQ+V + Sbjct: 336 NEFINSIRDGKGDAFRKRYREMDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIVLS 395 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DRPP +L +L+ R+R+R + G+ + + E R +IL+ + +LN EVL Sbjct: 396 SDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLNAPPEVL 450 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKKMRIEDI 414 +A ++ + REL+GA ++ S + + +++L +L+ ++ DI Sbjct: 451 EFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEDVLKNLIPGGEDSAPEITASDI 510 Query: 415 QRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLH 474 A ++ ++ +DL + R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+H Sbjct: 511 MAATADYFGLTVDDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMH 570 Query: 475 AVRKVEKMLETDITLKKEVELLKRLIS 501 A RK+ ++ ++ +V L I Sbjct: 571 ADRKIRALMAERRSIYNQVTELTNRIK 597 Score = 47.4 bits (111), Expect = 0.006, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 35/86 (40%), Gaps = 5/86 (5%) Query: 34 NCESIFTIVSSRL----KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + + P W +R + +++ + L+VP + K ++ R Sbjct: 7 DLAAVWPRVLEKLLGEGQQGIEPKD-KQWVERCQPLALVADTALLAVPNEWGKRVLEGRL 65 Query: 90 LETITKLFQEEHSRIQGVEILVRSVA 115 I+ E R + I V A Sbjct: 66 APLISDALSRECGRPIRIAITVDDSA 91 >gi|294630338|ref|ZP_06708898.1| chromosomal replication initiator protein DnaA [Streptomyces sp. e14] gi|292833671|gb|EFF92020.1| chromosomal replication initiator protein DnaA [Streptomyces sp. e14] Length = 643 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 119/371 (32%), Positives = 193/371 (52%), Gaps = 16/371 (4%) Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + S +P P + L+ +++F TF+ G+SNR A V Sbjct: 283 ASGPSGAPAKPAPGPGEPT--ARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAK 335 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLFI+ GLGKTHLL AI + + P RV Y+++E F F ++IRD + + Sbjct: 336 AYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFR 395 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R +D+LL+DD+QFL K Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R Sbjct: 396 KRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLR 455 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +R + G+ + + E R +IL+ + +LN EVL +A ++ + REL+G Sbjct: 456 NRFEWGLITDVQPPELETRIAILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEG 510 Query: 374 AFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLL 430 A ++ S + + + +L L+ T ++ I A ++ ++ +DL Sbjct: 511 ALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDSTPEITATAIMASTADYFGLTVDDLC 570 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ ++ ++ Sbjct: 571 GTSRGRQLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIY 630 Query: 491 KEVELLKRLIS 501 +V L I Sbjct: 631 NQVTELTNRIK 641 Score = 37.0 bits (84), Expect = 7.8, Method: Composition-based stats. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPS 118 + L+VP F K ++ R +++ E R + I V S S Sbjct: 4 DTALLAVPNEFAKNVLEGRLAPIVSETLSRECGRPIRIAITVDSSVGES 52 >gi|291446132|ref|ZP_06585522.1| chromosomal replication initiator protein dnaA [Streptomyces roseosporus NRRL 15998] gi|291349079|gb|EFE75983.1| chromosomal replication initiator protein dnaA [Streptomyces roseosporus NRRL 15998] Length = 625 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 117/350 (33%), Positives = 191/350 (54%), Gaps = 14/350 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ +++F TF+ G+SNR A V NPLFI+ GLGKTHLL A Sbjct: 284 ARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHA 338 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 339 IGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKE 398 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R + Sbjct: 399 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIA 458 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 459 ILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLT 513 Query: 394 DELLSHLVNTGET--KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + +L L+ GE ++ I A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 514 EIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDDLCGSSRSRVLVTARQIAMYLCRE 573 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 574 LTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 623 Score = 50.8 bits (120), Expect = 6e-04, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 42/119 (35%), Gaps = 5/119 (4%) Query: 34 NCESIFTIVSSRL----KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + + P W +R + +++ + L+VP + K ++ R Sbjct: 7 DLAAVWPRVLEQLLGEGQQGIEPKD-KQWIERCQPLALVADTALLAVPNEWGKRVLEGRL 65 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 I++ E R + I V A A + S + P + Sbjct: 66 APLISESLTRECGRPIRIAITVDDSAGEPPAPPAPPMRQSHGSQQDHRYPAQPRDDAPR 124 >gi|257054090|ref|YP_003131922.1| chromosomal replication initiation protein [Saccharomonospora viridis DSM 43017] gi|256583962|gb|ACU95095.1| chromosomal replication initiator protein DnaA [Saccharomonospora viridis DSM 43017] gi|260600338|gb|ACX47006.1| chromosomal replication initiator protein DnaA [Saccharomonospora viridis] Length = 597 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 121/380 (31%), Positives = 207/380 (54%), Gaps = 13/380 (3%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 ++ ++ P + + + L+ ++ F TF+ G+SNR A AA ++AE Sbjct: 224 AAVHEIWPTFSGQPIAGQPYTAPAQPQTSKTRLNEKYTFDTFVIGASNRFAHAAAVAVAE 283 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 S Y NPLF+ GLGKTHLL A+ + + + P +RV Y++ E F F +++ Sbjct: 284 APSRAY-----NPLFVWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSL 338 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 RD+ + + R+ID+LL+DD+QFL+GK Q EF H N+L ++ KQ+V ++DRPP Sbjct: 339 RDDRKVAFQRRYRDIDILLVDDIQFLEGKEGTQEEFFHTFNTLHNANKQIVVSSDRPPKR 398 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 LE+L+ R+R+R + G+ + + E R +IL+ + A + L + EVL +A V Sbjct: 399 LETLEERLRTRFEWGLITDIQPPELETRIAILRKKAAQDR-----LAVPGEVLEFIAARV 453 Query: 365 TTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHY 422 + REL+GA ++ S + +A+ +L L+ T + ++ I + A+ + Sbjct: 454 EANIRELEGALIRVTAFASLNQQPVDVGLAEVVLRDLMPTDSQAPEISASMIMNVTAEFF 513 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 +++ DL + + + RQ+AMYL + +T S P IG+ FG RDHTTV+HA +K+ K Sbjct: 514 DVTVEDLCGPGKTKALATARQIAMYLCRELTDMSLPRIGQTFGGRDHTTVMHADKKIRKE 573 Query: 483 LETDITLKKEVELLKRLISE 502 + + +V+ L I + Sbjct: 574 MAERRRIYDQVQELTSRIKQ 593 Score = 52.4 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 41/115 (35%), Gaps = 3/115 (2%) Query: 32 EVNCESIFTIVSSRL-KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 ++N ++ V + L + + P +W + + +L L+ P++F K I+ Sbjct: 5 QLNLAVVWEQVVAELSEGTLSPQQ-RAWMRVTRPIGLLDGTALLAAPSDFAKEAIERALR 63 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 E IT R + + V S + SP + + S L Sbjct: 64 EPITSALSRHLGREVSLAVKVDSTESTPPPPPSPL-PTGPGSPGDAAMPPSATTL 117 >gi|332299202|ref|YP_004441123.1| Chromosomal replication initiator protein dnaA [Porphyromonas asaccharolytica DSM 20707] gi|332176265|gb|AEE11955.1| Chromosomal replication initiator protein dnaA [Porphyromonas asaccharolytica DSM 20707] Length = 475 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 134/476 (28%), Positives = 238/476 (50%), Gaps = 24/476 (5%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + L+ + P+VY +WF +K S++ + L VP+ F +I+ ++ + ++ Q Sbjct: 11 WSECTVLLQAMIQPEVYNAWFPHIKPVSLIGVEMTLGVPSQFFCEYIETHFINELKQVLQ 70 Query: 99 EEHSR--IQGVEILVRS---------VALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 + + LV S V LP+ +++ IN N + + + Sbjct: 71 RIVGPNVVLKYKALVDSAASHRKNSSVTLPTQSYASNAYGAAGAYTINANGAAAALKTEP 130 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + P F S L + F T+ +G SNR A + A+SIAE G LNP FI+ G+ Sbjct: 131 RQL-PDFDSQLKPQLSFDTYYQGESNRTASSIARSIAEKPGQG----ALNPCFIYGPSGV 185 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL AI + P L+V+Y+++ F ++ +A R N + + + +D+LLIDD Sbjct: 186 GKTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVLLIDD 245 Query: 268 MQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +Q + K Q F + N L KQ+V +D P L L+ R+ SR+ G +++ + Sbjct: 246 IQGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTIEVER 305 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 DY++R L++ + E+ + +E++ ++ARTVT+S R L G F L+ R + Sbjct: 306 PDYDLRREYLRH-----KSEESGSILPQEMIDYIARTVTSSIRGLQGVFFSLITRAAVEG 360 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T+ +++S V E K++ + I++ V ++Y++ + S R V + RQ+ Sbjct: 361 CDVTSSFVKKIVSQTVK-QEKKEITVSMIEKTVCEYYHVPIELVRSRSRKADVAQARQMI 419 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MY +K T +S IG G R H TVLH+ + VE E + ++ ++ LI Sbjct: 420 MYFAKRYTDQSLSAIGELLGGRSHATVLHSCKVVEDQAEVSTAYRSDLTAIESLIK 475 >gi|239942670|ref|ZP_04694607.1| chromosomal replication initiation protein [Streptomyces roseosporus NRRL 15998] gi|239989129|ref|ZP_04709793.1| chromosomal replication initiation protein [Streptomyces roseosporus NRRL 11379] Length = 611 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 117/350 (33%), Positives = 191/350 (54%), Gaps = 14/350 (4%) Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L+ +++F TF+ G+SNR A V NPLFI+ GLGKTHLL A Sbjct: 270 ARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHA 324 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I + + P RV Y+++E F F ++IRD + R++D+LL+DD+QFL K Sbjct: 325 IGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDTFRKRYRDVDILLVDDIQFLASKE 384 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R + Sbjct: 385 STQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLTTDVQPPELETRIA 444 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 445 ILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLT 499 Query: 394 DELLSHLVNTGET--KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + +L L+ GE ++ I A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 500 EIVLKDLIPGGEESAPEITAPAIMAATADYFGLTVDDLCGSSRSRVLVTARQIAMYLCRE 559 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 560 LTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 609 Score = 43.9 bits (102), Expect = 0.067, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 32/93 (34%) Query: 56 ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA 115 W +R + +++ + L+VP + K ++ R I++ E R + I V A Sbjct: 18 KQWIERCQPLALVADTALLAVPNEWGKRVLEGRLAPLISESLTRECGRPIRIAITVDDSA 77 Query: 116 LPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 A + S + P + Sbjct: 78 GEPPAPPAPPMRQSHGSQQDHRYPAQPRDDAPR 110 >gi|228470045|ref|ZP_04054956.1| chromosomal replication initiator protein DnaA [Porphyromonas uenonis 60-3] gi|228308319|gb|EEK17168.1| chromosomal replication initiator protein DnaA [Porphyromonas uenonis 60-3] Length = 475 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 130/475 (27%), Positives = 235/475 (49%), Gaps = 22/475 (4%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + L+ + P+VY +WF +K S++ + L VP+ F +I+ ++ + ++ Q Sbjct: 11 WSECTVLLQAMIQPEVYNAWFPHIKPVSLIGVEMTLGVPSQFFCEYIETHFINELKQVLQ 70 Query: 99 EEHSR--IQGVEILVRSVALPSVEKTASSPSITKLSPI--------NTNISKSPIILGKQ 148 + + LV S A + + P+ + S + +P + + Sbjct: 71 RIIGPNVVLKYKALVDSAASHRKNSSVTLPTQSYASNAYGAASAYAISASGAAPALKSEP 130 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 P F S L + F+++ +G SNR A + A+SIAE G LNP FI+ G+G Sbjct: 131 RQLPDFDSQLKPQLSFASYYQGESNRTASSIARSIAEKPGQG----ALNPCFIYGPSGVG 186 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL AI + P L+V+Y+++ F ++ +A R N + + + +D+LLIDD+ Sbjct: 187 KTHLCHAIGLRIRELYPELKVLYVSSHMFEMQYVAATRANTTNDFINFYQQVDVLLIDDI 246 Query: 269 Q-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q + K Q F + N L KQ+V +D P L L+ R+ SR+ G +++ + Sbjct: 247 QGLIAKKKTQLTFFQVFNHLYMLGKQIVLTSDTAPVNLAGLEERLISRIAGSLTIEVERP 306 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP- 386 DY++R L++ + E+ + E++ ++ARTVT+S R L G F L+ R + Sbjct: 307 DYDLRKEYLRH-----KSEESGSILPREMIDYIARTVTSSIRGLQGVFFSLITRAAVEGC 361 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T+ +++S V E K++ + I++ V +++++ + S R V + RQ+ M Sbjct: 362 DITSSFVKKIVSQTVK-QEKKEITVSMIEKTVCEYFHVPTELVRSRSRKADVAQARQLIM 420 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 Y +K T +S IG G R H TVLH+ + VE E + ++ ++ LI Sbjct: 421 YFAKRYTDQSLSAIGELLGGRSHATVLHSCKVVEDQAEVSTAFRSDLNAIESLIK 475 >gi|254670914|emb|CBA07496.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha153] Length = 518 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 145/529 (27%), Positives = 239/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEH----------SRIQGVEILVRSVALPSVEKTASS---------------PS 127 I + +E E+ V A+ E + + PS Sbjct: 60 IEAVREELAAGRSAFVFKPGEGVRYEMAVVEGAVEPAEPSLHAVSEEMPVQEVLLDELPS 119 Query: 128 ITKLSPINT------------NISKSPIILGKQTISPVFG-------------------- 155 + + N+ P P Sbjct: 120 EEPVKSVQAKTAADILAERMKNLPHEPRHTAGSASRPESEVLAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|307565813|ref|ZP_07628274.1| chromosomal replication initiator protein DnaA [Prevotella amnii CRIS 21A-A] gi|307345437|gb|EFN90813.1| chromosomal replication initiator protein DnaA [Prevotella amnii CRIS 21A-A] Length = 467 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 121/472 (25%), Positives = 228/472 (48%), Gaps = 14/472 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNR 88 + V+ +S++ + V Y +WF+ L F S L VP+ F+ +++ Sbjct: 1 MSVSPKSLWEQCLCLISENVSEQQYNTWFKPLVFKSYQPATKCLLLLVPSMFVYEYLEEH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +++ + K+ + V + + + + + ++ T + Sbjct: 61 FIDLLKKVLTRVFGERVMLTYSVITDKDHHLTQELQTEGVEQIDSKRTTDRGNQSPTIID 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 ++ P S LDS F+ ++EG SN++ LT +IAE + + NPLF++ G G Sbjct: 121 SVLPDIDSQLDSHKSFNNYVEGDSNKMPLTIGLAIAEHPNKN----QFNPLFVYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI K P RV+Y++A F ++ +++R N + + ID+LL+DD+ Sbjct: 177 KTHLINAIGLKIKKLYPQKRVLYVSARLFQVQYTNSVRTNTTNDFIHFYQTIDILLVDDI 236 Query: 269 QFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + K+++ A+DRPP +L ++ R+ +R + G+ L Sbjct: 237 QEWMTATKTQDTFFHIFNHLSRNGKRIILASDRPPVDLRGMNDRLLTRFKAGLITELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + ++ IL N++ L I E+V+ +A+T S R+L G N L+ + Sbjct: 297 NIQLCIDILHNKIKRD-----GLIIPEDVIQFIAQTANGSVRDLQGVINSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + I+DI V +H+N+++ + S R + +V RQV M Sbjct: 352 AVDMNLAERVIKRAVKID-NEPLTIDDILEKVCEHFNVTQAAVNSRSRKKDIVIARQVTM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 Y+++ T IG+ G RDH+TV+H+ K+E L+ D + E+ ++ Sbjct: 411 YMAQKYTKMPACRIGKLVGGRDHSTVIHSCTKIEDRLQIDKSFTAELAAIEN 462 >gi|154174998|ref|YP_001407305.1| chromosomal replication initiation protein [Campylobacter curvus 525.92] gi|166201871|sp|A7GVR3|DNAA_CAMC5 RecName: Full=Chromosomal replication initiator protein DnaA gi|112803521|gb|EAU00865.1| chromosomal replication initiator protein DnaA [Campylobacter curvus 525.92] Length = 436 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 122/465 (26%), Positives = 221/465 (47%), Gaps = 40/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 V L ++ P+ Y + ++LKF+ V + P + +IK +Y I LF Sbjct: 4 DEVLELLSAEISPNEYEYYIKQLKFNEKASSDETVVFNAPNELIAKFIKTKYATKIAHLF 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + VEI ++ S + + I S + Sbjct: 64 EVKTGTKPNVEITTQTKLKSSKQNQVNIKQIKAQS-----------------------TL 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ G SN A +A++ +E Y NPLFI+ GLGKTHLLQ++ Sbjct: 101 LNPAYTFENFVVGGSNEYAFLSAKAASEQPGKIY-----NPLFIYGPTGLGKTHLLQSVG 155 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + V+ +T+E FM F I ++ ++ RN D+LLIDD+QFL I Sbjct: 156 NFCLNQ--GKVVICVTSEQFMTDFTYNINNHSMERFREKYRNCDVLLIDDVQFLGKTDKI 213 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L Q+V +DR P L+ + R+R+R + G+ + + + + +I+ Sbjct: 214 QEEFFHTFNELHSKNGQIVMTSDRQPKLLKGFEDRLRTRFEWGIMADITPPELDTKIAII 273 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADE 395 + + + + +N++V+ ++A + + RE++ A L + +T + A Sbjct: 274 QKKCEFDK-----IYLNKDVINYIATNMGDNIREIESAIINLNAYANLMRQEITLDFAKN 328 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ L+ + + +E+I +V+K NI +D+ S RV+ +V R++ +YL+K++T Sbjct: 329 VMRDLIKEK-RENINLENIIEVVSKELNIKPSDIKSKSRVQNIVEARRIVIYLAKMLTTN 387 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+I F +DH+ V H ++K+ +++E + V LK I Sbjct: 388 SMPQIANYFSMKDHSAVSHNIKKINELIENNEIFNLRVSELKNKI 432 >gi|323344469|ref|ZP_08084694.1| replication initiation protein DnaA [Prevotella oralis ATCC 33269] gi|323094596|gb|EFZ37172.1| replication initiation protein DnaA [Prevotella oralis ATCC 33269] Length = 469 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 124/474 (26%), Positives = 231/474 (48%), Gaps = 17/474 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSV--PTNFLKAWIKNR 88 ++V+ S + + ++ V Y++WF+ + F S + V P+ F+ +++ Sbjct: 1 MKVSPNSCWENALALIRENVTEQQYSTWFKPIVFESYDETKKTVLVKVPSTFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRI--QGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 Y++ + K+ S+ G I+ + + ++SP ++ Sbjct: 61 YVDLLKKVLGRVFSKNVNLGYRIMADKEHNITTVVEGVVGDTDPKPKAISRGNQSPSLMD 120 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 + P S L+ F+ +IEG SN++ + SIAE + T + NP+FI+ G Sbjct: 121 AVKMQP-LDSQLNPHQTFANYIEGDSNKLPRSIGLSIAEHPN----TAQFNPMFIYGPSG 175 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 GKTHL+ AI + P RV+Y++A F +F++A N + + + ID+L++D Sbjct: 176 CGKTHLINAIGMKIREHYPRKRVLYVSARLFQVQFSNATLRNSVNDFINFYQTIDVLIVD 235 Query: 267 DMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+Q ++ Q+ F H+ N L + K+++ A+DRPP +LE ++ R+ +R G+ L Sbjct: 236 DIQEWITAVKTQNTFFHIFNHLFKNGKRIILASDRPPVDLEGMNDRLLTRFSCGLIAELE 295 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-F 384 + ++ IL N + L+I +EV+ +A + S R+L G N L+ + Sbjct: 296 QPNVKLCIDILNN-----KIHRDGLDIPKEVVEFIASSANGSVRDLQGVVNSLLAYSVVY 350 Query: 385 APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + +A+ ++ V K + I+DI V H+N+S + S R +V RQV Sbjct: 351 NSSIDMRLAERVIKRAVKID-DKPLTIDDILDSVCNHFNVSATAVNSRSRKHDLVVARQV 409 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +MYL++ T IG+ G RDH+TV+H+ +VE+ L+ D E++ ++ Sbjct: 410 SMYLAQKYTKMPASRIGKLVGGRDHSTVIHSCSQVEQRLKIDRLFSDEIQSIEN 463 >gi|241895507|ref|ZP_04782803.1| DNA-directed DNA replication initiator protein [Weissella paramesenteroides ATCC 33313] gi|241871253|gb|EER75004.1| DNA-directed DNA replication initiator protein [Weissella paramesenteroides ATCC 33313] Length = 467 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 143/482 (29%), Positives = 242/482 (50%), Gaps = 29/482 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPD-VYASW---FQRLKFHSVLHNIVHLSVPTNF---LKAWI 85 ++ ++ + L+N + Y ++ + L+ +N V L + T + W+ Sbjct: 1 MDPIQLWNAIKEELRNSISQGFSYTNYVDTLKPLQLVENENNTVTLQLTTAYEQVASEWL 60 Query: 86 KNR--YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 Y + + ++ G + +PSV + +P+ P + + Sbjct: 61 NANSSYYQAFMQAAMTATLKLTGQPTFI----IPSVTYVSPTPTTLFDLPEDEEKVQQQN 116 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 + V S L+ F F TF+ NR A AQ++A+ + NPL I+ Sbjct: 117 NASLAS-EFVTQSILNPEFRFETFVSSDENREAYAVAQAVADKPG-----TQWNPLLIYG 170 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNID 261 VGLGKTHL+QAI N ++R PN V ++T E F+ F A+R K R+ D Sbjct: 171 GVGLGKTHLMQAIGNKVLERTPNANVKFITTEDFINDFTEALRRGQKETEAFKREYRSTD 230 Query: 262 LLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGV 320 LL++DD+QFL GK IQ EF + N++ Q+V +D+ P E+ L+ R+ +R G Sbjct: 231 LLMVDDVQFLAGKEKIQEEFFNTFNAITRENHQIVLTSDKLPKEIPGLEMRLVTRFGQGY 290 Query: 321 SVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF 380 S + D R +IL+N+ + L+I +V+ +A V T+ R+L+G FNQ+V Sbjct: 291 SANITKPDLPTRVAILRNKSDLE-----NLSIPNDVIDEIAAAVDTNVRDLEGVFNQVVG 345 Query: 381 RHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVV 439 + F+ + +T E A +L + N + + I IQ VA +N++ DL +R + +V Sbjct: 346 KMRFSNVPVTVETARTILETM-NFKRQRAITIPIIQEAVANFFNVTVQDLNGKKRNKEIV 404 Query: 440 RPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 PRQ+AMY+++ +T S P+IGR FG +DHTTV+H+ K+E +E D L ++V+ ++ Sbjct: 405 VPRQIAMYIARELTQDSLPQIGRAFGGKDHTTVMHSTEKIENAIENDSILAEQVQNIREE 464 Query: 500 IS 501 +S Sbjct: 465 LS 466 >gi|304388449|ref|ZP_07370555.1| DNA-directed DNA replication initiator protein [Neisseria meningitidis ATCC 13091] gi|304337566|gb|EFM03729.1| DNA-directed DNA replication initiator protein [Neisseria meningitidis ATCC 13091] Length = 518 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 144/529 (27%), Positives = 239/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEH----------SRIQGVEILVRSVALPSVEKTASS---------------PS 127 I + +E E+ V A+ E + + PS Sbjct: 60 IEAVREELVAGRSAFVFKPGEGVRYEMAVVEGAVEPAEPSLHAVSEEMPVQEVLLDELPS 119 Query: 128 ITKLSPINT------------NISKSPIILGKQTISPVFG-------------------- 155 + + N+ P P Sbjct: 120 EEPVKSVQAKTAADILAERMKNLPHEPRHTAGSASRPESEVLAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQ+AM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQIAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R V K+ E D L ++ E L LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 517 >gi|254671988|emb|CBA04453.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis alpha275] Length = 518 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 144/529 (27%), Positives = 240/529 (45%), Gaps = 72/529 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + + +A W L + + F +K+++ Sbjct: 1 MTLAEFWPLCLRRLHDMLPQGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGK 59 Query: 93 ITKLFQEEH----------SRIQGVEILVRSVALPSVEKTASS---------------PS 127 I + +E E+ A+ E + + PS Sbjct: 60 IEAVREELAAGRSAFVFKPGEGVRYEMAAVEGAVEPAEPSLHAGSEEMPVQEVLLDELPS 119 Query: 128 ITKLSPINT------------NISKSPIILGKQTISPVFG-------------------- 155 + P + N+ P + P Sbjct: 120 EEPVKPAASKTAADILAERMKNLPHEPRHTAEPASRPESEVLAKARTDAQRDAEEARYEQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFDTLVEGKGNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQA 234 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 + N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 VGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKD 294 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR + Sbjct: 295 RTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIA 354 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEI 392 IL+ + E ++I +E + +A + ++ REL+GAFN++ F P++ ++ Sbjct: 355 ILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDL 409 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ K + + I VAK+Y I +D+L +R R + RPRQVAM L+K + Sbjct: 410 ARTALQDIIAEKH-KVITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKEL 468 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T S P IG FG RDHTTV+H +R K+ E D L ++ E L+ LI Sbjct: 469 TTLSLPSIGDSFGGRDHTTVMHGIRAGAKLREEDPELAQDYEKLRFLIQ 517 >gi|256374161|ref|YP_003097821.1| chromosomal replication initiation protein [Actinosynnema mirum DSM 43827] gi|255918464|gb|ACU33975.1| chromosomal replication initiator protein DnaA [Actinosynnema mirum DSM 43827] Length = 577 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 193/369 (52%), Gaps = 12/369 (3%) Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 S + + L+ ++ F TF+ G+SNR A V Sbjct: 206 QPTPPSGTPFTRPANPASSQTRLNEKYNFDTFVIGASNRF-----AHAAAVAVAEAPARA 260 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NPLFI GLGKTHLL A+ + + + P +RV Y++ E F F +++RD+ + + Sbjct: 261 YNPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAFQR 320 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R+ID+LL+DD+QFL+GK Q EF H N+L +S KQ+V ++DRPP LE+L+ R+R+ Sbjct: 321 RYRDIDVLLVDDIQFLEGKEGTQEEFFHTFNTLHNSNKQIVVSSDRPPKRLETLEDRLRT 380 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R + G+ + + E R +IL+ + A + L EVL +A V + REL+GA Sbjct: 381 RFEWGLITDIQPPELETRIAILRKKAAQDR-----LAAPAEVLEFIAARVVRNIRELEGA 435 Query: 375 FNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 ++ S + ++A+ +L L+ ++ I + A+ + ++ DL Sbjct: 436 LIRVTAFASLNRQPVDVQLAEIVLRDLIPDSHVPEITAPTIMAVTAEFFEVTIEDLCGPG 495 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + + + RQ++MYL + +T S P+IG+ FG RDHTTV++A +K+ K + + +V Sbjct: 496 KTKVLSTARQISMYLCRELTDLSLPKIGQTFGGRDHTTVMYADKKIRKEMAERRRIYDQV 555 Query: 494 ELLKRLISE 502 + L I + Sbjct: 556 QELTSRIKQ 564 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 7/86 (8%) Query: 38 IFTIVSSRLKN------QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 ++ V L N + P +W + + +L L+ P++F K I+ E Sbjct: 11 VWEQVVEELANSALSSSTLSPQQ-RAWMRVTRPIGLLDGTALLAAPSDFAKEAIERALRE 69 Query: 92 TITKLFQEEHSRIQGVEILVRSVALP 117 IT R + + V S P Sbjct: 70 PITAALSRRLGRAVSLAVKVDSPEPP 95 >gi|281421238|ref|ZP_06252237.1| bacterial DnaA protein helix-turn-helix protein [Prevotella copri DSM 18205] gi|281404773|gb|EFB35453.1| bacterial DnaA protein helix-turn-helix protein [Prevotella copri DSM 18205] Length = 471 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 124/476 (26%), Positives = 227/476 (47%), Gaps = 20/476 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + + ++++ +K+ V Y +WF+ + F S + L VP+ F+ +++ Sbjct: 1 MLASPKALWDNSLLLIKDSVTEQQYNTWFKPIVFESYKPSTKTLLVQVPSPFVYEYLEQN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALP----SVEKTASSPSITKLSPINTNISKSPII 144 +++ ++K+ G+ + R V S + A ++ Sbjct: 61 FVDLLSKVLHRNFGE--GIRLTYRVVTDKEHKLSQDIEADPDDADMAKQTRERAQQTAAQ 118 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + LD + F+ ++EG SN++ + SIAE + T + NP+FI+ Sbjct: 119 PAAPQQQEDIDTQLDPKLTFNNYMEGDSNKLPRSVGLSIAEHPN----TTQFNPMFIYGP 174 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G GKTHL+ AI + + P RV+Y++A F ++ A+ N + + + ++ID+L+ Sbjct: 175 SGSGKTHLVNAIGLKAKQMYPQKRVLYVSARLFQTQYTDAVLHNASNDFINFYQSIDMLI 234 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+Q GK + F H+ N L + K+++ A DRPP EL+ + R+ +R G+ Sbjct: 235 VDDIQEWAGKAKTLNTFFHIFNHLFRNGKRIILACDRPPVELKDMPDRLLTRFSCGLVCE 294 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 L + ++ IL N++ L I +V+ +A+T S R+L GA N L+ Sbjct: 295 LEKPNIQLCVDILSNKIRRD-----GLKIPADVISFIAQTCNGSVRDLQGAVNGLLAYSI 349 Query: 384 -FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + + +A+ ++ V K + I+DI V HYN++ + S R R V R Sbjct: 350 VYNSSIDIRLAERVIKRAVKVD-DKPLTIDDIVETVCHHYNVTVTAVNSKSRKRDYVVAR 408 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 QV MYL++ T IG+ G+RDH+TV+H+ KVE+ L+ D E+ ++ Sbjct: 409 QVTMYLAQKYTKMPASRIGKLVGNRDHSTVIHSCSKVEERLKIDAGFSDELVSIEN 464 >gi|257065521|ref|YP_003151777.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii DSM 20548] gi|256797401|gb|ACV28056.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii DSM 20548] Length = 459 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 144/474 (30%), Positives = 242/474 (51%), Gaps = 20/474 (4%) Query: 33 VNCESIFTIVSSRLKNQVGP-DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N E I + + +K V + +W LK ++ ++L VP +I ++ Sbjct: 2 TNLEYITDELKNEMKMHVTDTQQFDTWISILKPLNLYSETLYLEVPKKDTL-FIYDKIWV 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 +L + G ++ V +A S + P + ++ Sbjct: 61 PQLQLALDNIKDKTGKDLKVSVIAKDSDDYNKVLTLGKDYDPNGQ--------MRISKVN 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ +F+ F+EG SN+ AL +Q++AE S+ NPLFI+ GLGKTH Sbjct: 113 SFPRPQLEEENIFANFVEGKSNQYALGVSQAVAENISNKSQARLYNPLFIYGESGLGKTH 172 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAIA+ + + + V+YL++E F SA+R ++ R++D+LLIDD+QF+ Sbjct: 173 LMQAIAHEILDNRDDAYVMYLSSEKFTNEMISALRSTKNEKFREKYRSVDILLIDDIQFI 232 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N L ++ KQ+V ++DRPP E++ L+ R+ SR G+ V +G D+E Sbjct: 233 AGKEGTQEEFFHTFNDLYNTGKQIVISSDRPPKEIKHLENRLISRFSWGIIVDIGKPDFE 292 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS--FAPIL 388 R +IL+ +L I+ +L ++A + T+ R+L+GA + + ++ Sbjct: 293 TRVAILQKKLDQLGA-----YIDNNILFYIAENIDTNIRDLEGALSTAIAYAKSDNREVV 347 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A + ++ V K + I+DIQ+ VA Y I +D+ R + +V PRQ+AM+L Sbjct: 348 TMEDAIKGVATRVKDK-KKHVGIDDIQKYVADKYGIKLSDIKGKSRKKEIVNPRQIAMFL 406 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ + S I F DRDHTTV+H + K++K +E D K+E++ L + I+E Sbjct: 407 SREILEDSLVTISNAF-DRDHTTVMHGIDKIQKQIEEDDNFKEEIDTLLKEITE 459 >gi|85709428|ref|ZP_01040493.1| chromosomal replication initiator protein [Erythrobacter sp. NAP1] gi|85688138|gb|EAQ28142.1| chromosomal replication initiator protein [Erythrobacter sp. NAP1] Length = 486 Score = 392 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 161/493 (32%), Positives = 268/493 (54%), Gaps = 19/493 (3%) Query: 13 NDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV 72 + ++ + D+ + VN + + +S L+ +G +++ W + ++ S+ Sbjct: 6 DKTRTTRRSADDDLMEDAEAVNLAADWADISQGLRKDLGHQLHSQWIKPIQVGSINKETG 65 Query: 73 HL--SVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK 130 L +PT F W+K+R+ + + ++ ++ V I V P + Sbjct: 66 TLDLFLPTEFSANWVKDRFHDRLQLAWKIVRGDVRNVNIQVH----PGRRQLPELRIDDG 121 Query: 131 LSPINTNISKSPIILGKQTISPVFGS-PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 P N S + G + S LD F F+ G +N +A AAQ +A Sbjct: 122 RRPANDGASAIAVAAGTIGDAGFTSSVGLDPSLTFQAFVTGEANVLACNAAQRMA----- 176 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 + +PL++ A+ G GKTHLL AI +A ++ P R+ Y +AE FM F A++ N Sbjct: 177 ATEQPQFSPLYLKAATGQGKTHLLHAIGHAFLQAHPRARIFYCSAERFMVEFVQALKANQ 236 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 + K LR+ DLLL+DD+QF+ GK Q E + +++LL K++V AADR P L+ + Sbjct: 237 MIEFKARLRSFDLLLVDDIQFIIGKASAQEELLYTIDALLAEGKRLVFAADRAPQALDGV 296 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSG 368 +PR+ SRL G+ + D E+R IL+++L L++ E+V+ +ART+T + Sbjct: 297 EPRLLSRLSMGLVADIQAADIELRKKILESKL----SRFAPLSVPEDVIDFLARTITRNV 352 Query: 369 RELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRN 427 REL G N+L+ ++ ++A+E L+ ++ + +++ I++IQR V + Y I R+ Sbjct: 353 RELVGGLNKLIAYAQLTGQEVSLQLAEEQLTDIL-SANRRRITIDEIQRTVCQFYRIDRS 411 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 ++ S RR R VVRPRQVAMYLSK++TPRS+PEIGR+FG RDH+TV+HAVR +E + + D Sbjct: 412 EMSSKRRARAVVRPRQVAMYLSKVLTPRSYPEIGRKFGGRDHSTVIHAVRLIEDLRQRDA 471 Query: 488 TLKKEVELLKRLI 500 + +V L R + Sbjct: 472 DMDGDVRSLLRQL 484 >gi|325478855|gb|EGC81965.1| chromosomal replication initiator protein DnaA [Anaerococcus prevotii ACS-065-V-Col13] Length = 459 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 146/474 (30%), Positives = 245/474 (51%), Gaps = 20/474 (4%) Query: 33 VNCESIFTIVSSRLKNQVGP-DVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N E I + + +K V + +W LK ++ +++++L VP +I + Sbjct: 2 TNLEYITDELKNEMKVHVTDTQQFNTWISILKPLNMYNDVLYLEVPKKDTL-FIYEKIWT 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 +L + G ++ V VA + K+ + + + + Q ++ Sbjct: 61 PQLQLALDNIKDKTGKDLKVSVVAK-------DGENYNKVLTLGKDYDSNGQMRINQ-VT 112 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ +F F+EG SN+ AL +Q++A+ S+ NPLFI+ GLGKTH Sbjct: 113 SFPRPQLEDENIFENFVEGKSNQYALGVSQAVAQNISNKSQARLYNPLFIYGESGLGKTH 172 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAIA+ + + + V+YL++E F +A+R ++ R++D+LLIDD+QF+ Sbjct: 173 LMQAIAHEILDNRDDAYVMYLSSEKFTNEMIAALRSTKNEKFREKYRSVDILLIDDIQFI 232 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N L ++ KQ+V ++DRPP E++ L+ R+ SR G+ V +G D+E Sbjct: 233 AGKEGTQEEFFHTFNDLYNTGKQIVISSDRPPKEIKRLEDRLVSRFSWGIIVDIGKPDFE 292 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS--FAPIL 388 R +IL+ +L I+ E+L ++A + T+ R+L+GA + + ++ Sbjct: 293 TRVAILQKKLDQLGA-----YIDNEILFYIAENIDTNIRDLEGALSTAIAYAKSDNREVV 347 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E A + V K + IEDIQ+ VA Y + DL R + +V PRQ+AMYL Sbjct: 348 TMEDAIIGVGTRVQNK-KKHVNIEDIQKQVADKYGVKLTDLKGKSRKKEIVNPRQIAMYL 406 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ + S I F DRDHTT++H + K++K +E D KKE+E L + ++E Sbjct: 407 SREILNDSLVTIANSF-DRDHTTIIHGIEKIQKQIEDDEDFKKEIESLYKDLTE 459 >gi|261363925|ref|ZP_05976808.1| DNA replication initiator protein [Neisseria mucosa ATCC 25996] gi|288567937|gb|EFC89497.1| DNA replication initiator protein [Neisseria mucosa ATCC 25996] Length = 516 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 148/527 (28%), Positives = 240/527 (45%), Gaps = 70/527 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + RL + + +A W L + + + F +K+++ Sbjct: 1 MTLAEFWPQCLRRLHDILPAGQFAQWIAPLTVGE-ENGVWVVYGKNQFACNMLKSQFAAK 59 Query: 93 ITKL------FQEEHSRIQGV-----------------------------------EILV 111 I + Q + GV E Sbjct: 60 IEVVRAELAPLQAAFAFKAGVGQHYEMAENAGAVAPEHTALTEEMPKADAQESFSDETSS 119 Query: 112 RSVALPSVEKTAS------------SPSITKLSPINTNISKSPIILGKQTISPV--FGSP 157 + PSV KTA+ +P + + ++ + Sbjct: 120 ENADKPSVAKTAADILAQRMKNLPHENKQPAAAPAESKVVAKAKTEAQRDAEEARYEQTN 179 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE GY NP F++ S GLGKTHL+QAI Sbjct: 180 LSRDYTFDTLVEGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIG 234 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 294 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 295 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 354 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + VA + ++ REL+GAFN++ F P++ ++A Sbjct: 355 QK-----KAEAAGISIEDEAALFVANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 409 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L ++ K + + I AK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 410 TALQDIIAEKH-KIITADTIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELTT 468 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 469 LSLPSIGDAFGGRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILIQ 515 >gi|111020655|ref|YP_703627.1| chromosomal replication initiation protein [Rhodococcus jostii RHA1] gi|123144805|sp|Q0SAG7|DNAA_RHOSR RecName: Full=Chromosomal replication initiator protein DnaA gi|110820185|gb|ABG95469.1| DNA-directed DNA replication initiator protein [Rhodococcus jostii RHA1] Length = 528 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 135/502 (26%), Positives = 227/502 (45%), Gaps = 68/502 (13%) Query: 56 ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVA 115 +W +K ++ LSVP+ F + I+ E I VE L +A Sbjct: 36 KAWLALVKPLTLAQGFALLSVPSPFAQEAIERDLREPILHALGRHLGE--QVEGLGVRIA 93 Query: 116 LPSVEKTASSPSITKLSPINTNISKS---------------------------------- 141 P ++ S P P + Sbjct: 94 APVDDEPESDPPSRDHRPEPEPLHTPRHLEPSVTSSGSFRRRRFGSGEDQPYSDTTDFEE 153 Query: 142 ---------------PIILGKQTISPVF----GSPLDSRFVFSTFIEGSSNRVALTAAQS 182 P K P G+ L++++ F TF+ GSSNR Sbjct: 154 VDDDREALASVHESWPSYFTKPPSGPAPSATGGNSLNAKYTFDTFVIGSSNRF-----AH 208 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 A V NPLF+ + GLGKTHLL A + + + P +RV Y++ E F F Sbjct: 209 AAAVAIAEAPARAYNPLFVWGASGLGKTHLLHAAGHYAQRLFPGMRVKYVSTEEFTNDFI 268 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRP 301 +++RD+ + K R D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRP Sbjct: 269 NSLRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRP 328 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P +L +L+ R+R+R + G+ + + E R +IL + +L + ++VL +A Sbjct: 329 PKQLATLEERLRTRFEWGLITDVQPPELETRIAILSK-----KARMDRLEVPDDVLELIA 383 Query: 362 RTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + REL+GA ++ S L +A+ +L L+ + ++ I + A+ Sbjct: 384 SRIERNIRELEGALIRVTAFASLNRQPLDLTLAEVVLRDLMPDSSSLEINAATIMAVTAE 443 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 ++N+S +DL + R + RQ++MYL + +T S P+IG+ FG RDHTTV++A +K+ Sbjct: 444 YFNMSIDDLCGPGKARPLASARQISMYLCRELTDLSLPKIGQTFG-RDHTTVMYADKKIR 502 Query: 481 KMLETDITLKKEVELLKRLISE 502 K + + +V+ L I + Sbjct: 503 KEMTERRKVYDQVQELTARIKQ 524 >gi|302520514|ref|ZP_07272856.1| chromosomal replication initiator protein DnaA [Streptomyces sp. SPB78] gi|302429409|gb|EFL01225.1| chromosomal replication initiator protein DnaA [Streptomyces sp. SPB78] Length = 679 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 115/351 (32%), Positives = 188/351 (53%), Gaps = 14/351 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ +++F TF+ G+SNR A V NPLFI+ GLGKTHLL Sbjct: 337 TARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 391 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 392 AIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADK 451 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R Sbjct: 452 ESTQEEFFHTFNTLHNANKQIVLSSDRPPRQLVTLEDRLRNRFEWGLTTDVQPPELETRI 511 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 512 AILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGL 566 Query: 393 ADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ + ++ I A ++ + DL + R R +V RQ+AMYL + Sbjct: 567 TEIVLKDLIPGGEDASPEITASAIMSATADYFGQTVEDLCGSSRSRVLVTARQIAMYLCR 626 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 627 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 677 Score = 48.9 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 1/101 (0%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 W +R + +++ + L+VP F K ++ R +++ E R + I V Sbjct: 24 WVRRCQPLALVADTALLAVPNEFAKTVLEGRLAPVVSETLSRECGRPIRIAITVDESMGD 83 Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + + P P ++ P+ L Sbjct: 84 APAPPRYEEPVQVPRP-RFEEPGQPRYETQERYEPIEAQTL 123 >gi|333025720|ref|ZP_08453784.1| putative chromosomal replication initiation protein [Streptomyces sp. Tu6071] gi|332745572|gb|EGJ76013.1| putative chromosomal replication initiation protein [Streptomyces sp. Tu6071] Length = 699 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 115/351 (32%), Positives = 188/351 (53%), Gaps = 14/351 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ +++F TF+ G+SNR A V NPLFI+ GLGKTHLL Sbjct: 357 TARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 411 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 412 AIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADK 471 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R Sbjct: 472 ESTQEEFFHTFNTLHNANKQIVLSSDRPPRQLVTLEDRLRNRFEWGLTTDVQPPELETRI 531 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 532 AILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGL 586 Query: 393 ADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ + ++ I A ++ + DL + R R +V RQ+AMYL + Sbjct: 587 TEIVLKDLIPGGEDASPEITASAIMSATADYFGQTVEDLCGSSRSRVLVTARQIAMYLCR 646 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 647 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 697 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 8/132 (6%) Query: 34 NCESIFTIVSSRLKNQVGPDVY-------ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 + +++ V +L + W +R + +++ + L+VP F K ++ Sbjct: 7 DLAAVWPRVVDQLLGEGPDSRAPGVEGKDEHWVRRCQPLALVADTALLAVPNEFAKTVLE 66 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 R +++ E R + I V + + P P Sbjct: 67 GRLAPVVSETLSRECGRPIRIAITVDESMGDAPAPPRYEEPVQVPRP-RFEEPGQPRYET 125 Query: 147 KQTISPVFGSPL 158 ++ P+ L Sbjct: 126 QERYEPIEAQTL 137 >gi|261879221|ref|ZP_06005648.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270334170|gb|EFA44956.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 469 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 120/473 (25%), Positives = 229/473 (48%), Gaps = 15/473 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 ++ + ++ + + ++ V +Y +WF+ + F + + VP+ F+ +++ Sbjct: 1 MKKSPDACWDSALALIRKNVTDQIYTTWFKPIVFENFDEARKMILVQVPSPFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKT-ASSPSITKLSPINTNISKSPIILGK 147 +++ + K+ Q G+ V + ++ + P P+ + + Sbjct: 61 FVDLLGKVLQHCFGAGVGLSYRVVTDKEHNLSQDIEGEPGGGIDKPLPRTRANQAPTVLD 120 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 L+ FS +IEG+SN + + SIAE + T++ NP+FI+ G Sbjct: 121 AAKPQQIDPQLNPHLTFSNYIEGNSNMLPRSVGMSIAEHPN----TMQFNPMFIYGPSGC 176 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI + + P RV+Y++A F ++ +A+ N + + ID+L++DD Sbjct: 177 GKTHLVNAIGVKAKQLYPQKRVLYISARLFQVQYTNAVLQNKLNDFIGFYQTIDMLIVDD 236 Query: 268 MQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 +Q Q F H+ N L + K+++ A+DRPP EL+ + R+ +R G+ L Sbjct: 237 IQEWVSAVKTQETFFHIFNHLFRNGKRIILASDRPPIELKGMPDRLLTRFSCGLIAELEK 296 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FA 385 + ++ IL++++ LNI +V+ +A+T + S R+L G N L+ + Sbjct: 297 PNEQLCIDILESKIRRD-----GLNIPHDVVQFIAQTASGSVRDLQGVINSLMAYSIVYN 351 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A+ ++ V + + I+DI V HYN++ + S R + VR RQV+ Sbjct: 352 CDIDMRLAERVIKRAVKID-DEPLTIDDILDKVCVHYNVTAAQVNSKSRKQDFVRARQVS 410 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 MYL++ T IG+ G+RDH+TVLH+ +VEK L+ D E+ ++ Sbjct: 411 MYLAQKYTKMPASRIGKLVGNRDHSTVLHSCSQVEKRLKADKAFGAELSSIEN 463 >gi|260885410|ref|ZP_05734994.2| bacterial DnaA protein helix-turn-helix protein [Prevotella tannerae ATCC 51259] gi|260852301|gb|EEX72170.1| bacterial DnaA protein helix-turn-helix protein [Prevotella tannerae ATCC 51259] Length = 460 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 119/477 (24%), Positives = 219/477 (45%), Gaps = 35/477 (7%) Query: 28 KRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 KR V ++ + + L+ + + +WF LKF S+ + + + P F+ +I+ Sbjct: 16 KRLKFVMSQNKWDLCIKTLQAHLSEQAFRTWFAYLKFVSLDADKLVIGAPNKFVIDYIEG 75 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 YL + + + K A S +P + K + Sbjct: 76 NYLALLQTSIKAHFGNV----------------KVAYSFPKEGEAPRREKVEKVEDAPRR 119 Query: 148 QTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGL 207 + + P L+ + F F+EG +N++A +IA+ NP F++ G+ Sbjct: 120 ERLDP----QLNRDYTFKAFVEGRANKLARVIGLAIAKEPGKP----AFNPFFLYGPSGV 171 Query: 208 GKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDD 267 GKTHL+ AI ++ QP RV+Y+ A F ++ ++ N + + ID+L+IDD Sbjct: 172 GKTHLVNAIGLRILESQPERRVLYVPAHLFKTQYTDSVLHNTINDFIHFYQTIDVLIIDD 231 Query: 268 MQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 +Q + Q F H+ N L + +Q++ DR P + E ++ R+ +R + G + Sbjct: 232 IQEITTAKTQQAFFHIFNHLQQNGRQIIITCDRAPVDFEGIEERMLTRFKWGTVTEMEKP 291 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 D +R +IL ++ + L +V+ ++A V +S REL G N ++ + Sbjct: 292 DVALRRAIL-----TAKIKRDGLKFPPDVIDYIANNVESSVRELQGIVNSIMAYSV---V 343 Query: 388 LTAEIADELLSHLVNTGET---KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 +I +L+ +V ++ ++DI + V K YN+ D+ S R + +V RQ+ Sbjct: 344 DNCDICQDLVEKVVARAVNLEKHELTLDDIVKAVCKRYNVKLKDVNSKSRKQGIVLARQL 403 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 AM+LS T + +IG G +DH+TVLHA + + TD ++EVE L+ ++ Sbjct: 404 AMFLSHKYTTLPYSQIGHLIGRKDHSTVLHACNTISNRITTDKNFRREVEELESVLK 460 >gi|160946604|ref|ZP_02093807.1| hypothetical protein PEPMIC_00562 [Parvimonas micra ATCC 33270] gi|158446988|gb|EDP23983.1| hypothetical protein PEPMIC_00562 [Parvimonas micra ATCC 33270] Length = 471 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 134/479 (27%), Positives = 256/479 (53%), Gaps = 20/479 (4%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+ +S++ V + LK+++G +A+W + LK + + + +N++K +I + + Sbjct: 5 EIVVDSLWLEVCNELKDKLGESRFATWIEVLKPICYEDHKLMVLCQSNYIKTFINGHFKD 64 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 I + I + + V + + + + + + GK Sbjct: 65 YIEDAINNQLFPIIKEKTELLPVVATDEIYLEAIKNSRGQASFFSKSGEKGLKKGKLKKI 124 Query: 152 PVFGSPL--DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L RF F+ F++G +N A+ AA+++A+ + Y NPLFI+ + GLGK Sbjct: 125 SSSNNSLTFSDRFTFNNFVKGKNNEFAMAAAEAVAKNPAGTY-----NPLFIYGNSGLGK 179 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL---NLKDSLRNIDLLLID 266 THL++AI + K + +V+YL++E F +IRD + RN+D+LLID Sbjct: 180 THLMKAIGHEIHKNF-DCKVLYLSSEKFTIDLIDSIRDKNQNSESEFRKKYRNVDVLLID 238 Query: 267 DMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QF+ GK Q EF H N L KQ++ ++DRPP E+++L+ R++SR G++V + Sbjct: 239 DIQFIAGKTATQEEFFHTFNELYSRNKQIIISSDRPPKEIKNLEDRLKSRFNMGLTVDIQ 298 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 D+E R +IL+ + + + ++ EVL +A + T+ REL+GA ++ + Sbjct: 299 PPDFETRMAILQ-----DKVKYEPIALSNEVLEFIAMNIKTNIRELEGALINVLAHYKLK 353 Query: 386 P--ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T + +L+ +N +++ I+ I+ V+K++ I +DL S R ++ PRQ Sbjct: 354 QDAPMTVDYVKRILAQKLNELNRRELDIDLIKETVSKYFKIEVSDLSSKNRANSIAYPRQ 413 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 VAMYL + M + IG F ++DHTT++H V+K+++ ++T ++K+++E +K+++ + Sbjct: 414 VAMYLCRNMLDCALGNIGSAF-EKDHTTIMHGVKKIDEKIKTTESVKQDIENIKKMLED 471 >gi|289770505|ref|ZP_06529883.1| chromosomal replication initiator protein DnaA [Streptomyces lividans TK24] gi|289700704|gb|EFD68133.1| chromosomal replication initiator protein DnaA [Streptomyces lividans TK24] Length = 656 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 120/399 (30%), Positives = 195/399 (48%), Gaps = 19/399 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFST 166 R E S + + P+ + +P G + + +++F T Sbjct: 266 RGPRRDLPEPPPGSGHVHRGGPVGPGPATGGAGPLAAQPAPATGPGEPTARRNPKYLFDT 325 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G+SNR A V NPLFI+ GLGKTHLL AI + + P Sbjct: 326 FVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPG 380 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLN 285 RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N Sbjct: 381 TRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFN 440 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Sbjct: 441 TLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KA 495 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN-- 402 +LN EVL +A ++ + REL+GA ++ S + + + +L L+ Sbjct: 496 VQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGG 555 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 ++ I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG Sbjct: 556 EDSAPEITSTAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGA 615 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 616 LFGGRDHTTVMHADRKIRNLMAERRSIYNQVTELTNRIK 654 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 4/118 (3%) Query: 34 NCESIFTIVSSRLKNQVGPDVYAS----WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + S W +R + +++ + L+VP F K ++ R Sbjct: 7 DLAAVWPRVLEQLLGEGRGQGVESKDEHWIRRCQPLALVADTALLAVPNEFAKGVLEGRL 66 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGK 147 +++ E R + I V A +P P + G+ Sbjct: 67 APIVSETLSRECGRPIRIAITVDDTAGEPAGPAPQAPQSPPSRPQHRYEEPELPAPGQ 124 >gi|256786613|ref|ZP_05525044.1| chromosomal replication initiation protein [Streptomyces lividans TK24] Length = 641 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 120/399 (30%), Positives = 195/399 (48%), Gaps = 19/399 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-----SPLDSRFVFST 166 R E S + + P+ + +P G + + +++F T Sbjct: 251 RGPRRDLPEPPPGSGHVHRGGPVGPGPATGGAGPLAAQPAPATGPGEPTARRNPKYLFDT 310 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G+SNR A V NPLFI+ GLGKTHLL AI + + P Sbjct: 311 FVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPG 365 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLN 285 RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Q EF H N Sbjct: 366 TRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFN 425 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Sbjct: 426 TLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KA 480 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN-- 402 +LN EVL +A ++ + REL+GA ++ S + + + +L L+ Sbjct: 481 VQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGG 540 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 ++ I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG Sbjct: 541 EDSAPEITSTAIMGATADYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGA 600 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 601 LFGGRDHTTVMHADRKIRNLMAERRSIYNQVTELTNRIK 639 Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 W +R + +++ + L+VP F K ++ R +++ E R + I V A Sbjct: 20 WIRRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVSETLSRECGRPIRIAITVDDTAGE 79 Query: 118 SVEKTASSPSITKLSPINTNISKSPIILGK 147 +P P + G+ Sbjct: 80 PAGPAPQAPQSPPSRPQHRYEEPELPAPGQ 109 >gi|254456286|ref|ZP_05069715.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. HTCC7211] gi|207083288|gb|EDZ60714.1| chromosomal replication initiator protein DnaA [Candidatus Pelagibacter sp. HTCC7211] Length = 469 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 166/473 (35%), Positives = 273/473 (57%), Gaps = 25/473 (5%) Query: 32 EVNCESI-FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +N ES + +V + +KN++G D+Y SW +++ F +N + LSVPT F++ WI +RYL Sbjct: 9 NLNPESFDWKLVQNEMKNKLGLDIYESWLKKITFVDEFNNYLLLSVPTRFIRDWITSRYL 68 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I ++ + I +E + + + + + PI N + S I Sbjct: 69 DQILQIIRLYKKDIIRIEFKID------DQDKSQNINEDIKKPIERNENVSFIKDSYLQY 122 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + +D F FI G+SN++A A+ ++E SH NPL+I+ VG+GKT Sbjct: 123 N-----RIDPNKRFDNFIIGTSNKLAYEASLKVSENTSH------YNPLYIYGGVGMGKT 171 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL +I ++ + N +V++++AE FM++F +I+ N + K+ RN D+LLIDD+QF Sbjct: 172 HLLNSIG---LELKDNNKVMFISAERFMYQFVKSIKANDMVKFKEYFRNTDILLIDDIQF 228 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK +Q EF H N+LLD Q++ +ADR P++L + RI+SR GG+ V + D Sbjct: 229 ISGKEAMQEEFFHTFNALLDKGSQIIVSADRAPNKLSRIQDRIKSRFSGGLVVDIQKPDL 288 Query: 330 EMRFSILKNRLAISQKED-PKLNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPI 387 E+R I++ + +L +++++ ++R +T S REL GA N++V F + Sbjct: 289 ELRKKIVEKKTEELNSLYADQLQVSKDIQDFISREITASIRELVGAINRVVSFSRIYNKA 348 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +L L+N E K + I+ IQ +V K + IS+N++LS+RR R +VRPRQ A+Y Sbjct: 349 PNLSETKVILKDLLNLAENK-VTIDLIQTIVCKFFKISKNEMLSSRRSRYLVRPRQTAIY 407 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L+KI+T +S PEIGR F +RDHTT++H+V+ +EK+ E D + + LK I Sbjct: 408 LTKILTSKSLPEIGREFSNRDHTTIIHSVKTIEKIKEKDPEMVDNINKLKNQI 460 >gi|302531358|ref|ZP_07283700.1| chromosomal replication initiator protein DnaA [Streptomyces sp. AA4] gi|302440253|gb|EFL12069.1| chromosomal replication initiator protein DnaA [Streptomyces sp. AA4] Length = 585 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 118/371 (31%), Positives = 199/371 (53%), Gaps = 14/371 (3%) Query: 134 INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 I+ P Q + + L+ ++ F TF+ G+SNR A V Sbjct: 223 AGQPIAGQPYTAPAQPQTS--KTKLNEKYNFDTFVIGASNRF-----AHAAAVAVAEAPA 275 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NPLFI GLGKTHLL A+ + + + P +RV Y++ E F F +++RD+ + Sbjct: 276 RAYNPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTNDFINSLRDDRKVAF 335 Query: 254 KDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 + R+ID+LL+DD+QFL+GK Q EF H N+L ++ KQ+V ++DRPP LE+L+ R+ Sbjct: 336 QRRYRDIDILLVDDIQFLEGKEGTQEEFFHTFNTLHNANKQIVVSSDRPPKRLETLEDRL 395 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 R+R + G+ + + E R +IL+ + A + L + EVL +A V + REL+ Sbjct: 396 RTRFEWGLITDIQPPELETRIAILRKKAAQDR-----LAVPGEVLEFIASRVEANIRELE 450 Query: 373 GAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA ++ S + +A+ +L L+ T ++ I + A+ ++++ ++L Sbjct: 451 GALIRVTAFASLNQQPVEVGLAEIVLRDLIPDSHTPEITAPTIMGVTAEFFDVTLDELCG 510 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKK 491 + + + RQ+AMYL + +T S P+IG+ FG RDHTTV+HA +K+ K + + Sbjct: 511 PGKTKALATARQIAMYLCRELTEMSLPKIGQTFGGRDHTTVMHADKKIRKEMAERRRIYD 570 Query: 492 EVELLKRLISE 502 +V+ L I + Sbjct: 571 QVQELTSRIKQ 581 Score = 53.1 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 7/119 (5%) Query: 38 IFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 I+ V L + + P +W + + +L L+ P++F I+ +IT+ Sbjct: 37 IWEQVVRELSDGTLSPQQ-RAWMRVTRPIGLLDGTALLAAPSDFANEAIERALRTSITEA 95 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 R + + V S E A +P N + P + + G Sbjct: 96 LSRRLGRPVSLAVKVDS-----TEPVAPAPRYVASPARVENDAPRPEPVPSASPHTENG 149 >gi|269217836|ref|ZP_06161690.1| bacterial DnaA protein helix-turn-helix protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269212771|gb|EEZ79111.1| bacterial DnaA protein helix-turn-helix protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 591 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 116/370 (31%), Positives = 197/370 (53%), Gaps = 12/370 (3%) Query: 135 NTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 T I++ + T + + ++ R+ F F+ G +NR A + ++AE Y Sbjct: 225 QTTIAEEALAKRPDTAARSQKARINPRYTFDNFVIGDNNRFATATSLAVAESPGTTY--- 281 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NPLF+++ G+GKTHL+ AI N ++ P+++V Y++AE F F +++RD K Sbjct: 282 --NPLFLYSDSGMGKTHLMHAIGNYALNLFPSIKVRYVSAEEFTNAFINSVRDGHQAEFK 339 Query: 255 DSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 + R +D+LLIDD+QF+ G+ EF H N+L +S KQ+V +D P+ L + R+ Sbjct: 340 NQFRTVDILLIDDIQFIGGRDSTVEEFFHTFNALTNSNKQIVITSDVSPNLLNGFEERML 399 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR GV+ + + E R +IL+ + + EV ++A + T+ RE++G Sbjct: 400 SRFNSGVTANIDRPNLETRIAILEK-----KAHSDGFTVPREVNEYIATHMLTNVREMEG 454 Query: 374 AFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSN 432 A ++ + ++ +A+ +L L+ + ++ I A +++IS +++S Sbjct: 455 ALRRVTAFADLSKQTISLGLAEMILKDLIANPDAIEITATLIMSQTAGYFDISIEEMIST 514 Query: 433 RRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKE 492 R R +V RQVAMYL + MT S P+IG FG RDHTTV+HA RK++K + T + Sbjct: 515 DRSRVLVSARQVAMYLCREMTELSLPKIGHLFGKRDHTTVMHACRKIDKQMAERQTTYNQ 574 Query: 493 VELLKRLISE 502 V L I + Sbjct: 575 VSELTSRIKQ 584 Score = 44.3 bits (103), Expect = 0.049, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 45/119 (37%), Gaps = 3/119 (2%) Query: 35 CESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + L+ + A++ + + + I ++V + F+K WI+ ET Sbjct: 7 AKDAWNAATELLRADGSLSDSQ-AAFVRMAHPLAWVDEIFMIAVGSEFVKTWIEEHVSET 65 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 +T + R + I V S + SI + + ++ S L +++ Sbjct: 66 MTSMLSNILGRSVRIVISVDPSVNESQPVGTMASSIAPSAVAPSVLAASEDPLPASSLT 124 >gi|317503721|ref|ZP_07961737.1| DNA-directed DNA replication initiator protein [Prevotella salivae DSM 15606] gi|315665164|gb|EFV04815.1| DNA-directed DNA replication initiator protein [Prevotella salivae DSM 15606] Length = 468 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 117/471 (24%), Positives = 221/471 (46%), Gaps = 14/471 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 ++V+ +S + + +K V + +WF+ + F + VP+ F+ +++ Sbjct: 1 MKVSPDSSWGKAVALIKQNVTQQQFETWFKPIVFEHYDKEKKTILVQVPSLFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +L + + + V + + + + +K Sbjct: 61 FLALLKTVLYRTFGEGAQLTYRVVTDKEHKLTQDLEADGDDAEPSKKQQEAKLSPSSKDD 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 T + LD F ++EG+SN++A + SIAE + + NP+FI+ G G Sbjct: 121 TQVADIDTQLDPHLNFKNYVEGTSNKLARSLGLSIAEHPAQP----QFNPMFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + P RV+Y++A F +F A + + ID+L++DD+ Sbjct: 177 KTHLINAIGLRCKQLYPEKRVLYISARLFQTQFVDANFHGSINDFIRFYQTIDMLIVDDI 236 Query: 269 QFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L Sbjct: 237 QEWVNATKTQDTFFHIFNHLFRNGKRMLLASDRPPVDLKGMNERLLTRFSCGLIAELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + E+ ILK+++ L+I +EV+ +A T S R+L+G N L+ + Sbjct: 297 NVELCTDILKSKIRRD-----GLHIPDEVIQFIASTANGSVRDLEGVINSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + +++I V H+++++ + S R R +V RQV M Sbjct: 352 DIDMRLAERVIKRAVKIDDN-PLTVDEILDTVCNHFSVTQTAVNSKSRKRDLVTARQVTM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 YL++ T IGR G+RDH+TV+H+ +VE L+ D T K+E+ ++ Sbjct: 411 YLAQKYTKMPAARIGRLVGNRDHSTVIHSCTQVENRLKIDNTFKEEINSIE 461 >gi|281414964|ref|ZP_06246706.1| chromosomal replication initiator protein DnaA [Micrococcus luteus NCTC 2665] Length = 420 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 126/379 (33%), Positives = 193/379 (50%), Gaps = 12/379 (3%) Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 P + N + + + S L+ R+ F TF+ GSSNR A Sbjct: 46 EPPADVVPAANAAPNGNGKPTPAPPSTSAETSRLNDRYHFETFVIGSSNRF-----AHAA 100 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 NPLFI+ GLGKTHLL AI + + + P LRV Y+ +E F F ++ Sbjct: 101 ANAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGLRVRYVNSEEFTNDFINS 160 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + + K RN+D+LLIDD+QFL K EF H N+L ++ KQVV +D PP Sbjct: 161 IRHDEGASFKQVYRNVDILLIDDIQFLADKEATVEEFFHTFNTLYNNNKQVVITSDLPPK 220 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L + R+RSR + G+ + D E R +IL+ + E L E L ++A Sbjct: 221 QLSGFEDRLRSRFEWGLITDIQPPDLETRIAILRK-----KAEAEGLVAPPEALEYIASR 275 Query: 364 VTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 ++T+ REL+GA ++ S + E+A+ +L L+ ++ E I +++ Sbjct: 276 ISTNIRELEGALIRVTAFASLNRQTVDIELAEHVLKDLITDETAHEITPELILHATGEYF 335 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N++ +L S R RT+V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ ++ Sbjct: 336 NLTLEELTSKSRTRTLVTARQIAMYLLRELTEMSLPKIGQVLGGRDHTTVIHADRKIREL 395 Query: 483 LETDITLKKEVELLKRLIS 501 + T+ +V L I Sbjct: 396 MAERRTIYNQVTELTNEIK 414 >gi|242310227|ref|ZP_04809382.1| chromosomal replication initiator protein dnaA [Helicobacter pullorum MIT 98-5489] gi|239523524|gb|EEQ63390.1| chromosomal replication initiator protein dnaA [Helicobacter pullorum MIT 98-5489] Length = 430 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 124/465 (26%), Positives = 230/465 (49%), Gaps = 43/465 (9%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 + +LK ++ P + ++ +L F+ + + + P + +WIK +Y I +LF+ Sbjct: 4 ILLQLKKEITPFEFDNYINQLHFNEKYSRDDRIIFNAPNAIIASWIKTKYASKIAQLFEM 63 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 ++ + I V + K T + L+ Sbjct: 64 QNGFKPEIIIEVFNPNKKKDNK-------------------------HNTKKIQNATNLN 98 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 F++FI G+SN A A+++A+ S Y NPL I+ + GLGKTHLL AI NA Sbjct: 99 PSLTFNSFIVGNSNSFAFNVAKAVAQNQSTIY-----NPLMIYGNTGLGKTHLLNAIGNA 153 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 ++ V+Y T+E F+ + IR+N ++ R D LLIDD+QFL GK IQ Sbjct: 154 NV--NVGKSVIYTTSEQFLNDYLLHIRNNTMDRFREKYRACDYLLIDDIQFLSGKNQIQE 211 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N L + KQ+V +DRPP ++ L+ R+++R G+ + + E + +I+ Sbjct: 212 EFFHTFNELKKNNKQIVLTSDRPPKNMDGLEERLKTRFTSGLLADIQPPELETKINIIN- 270 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAEIADEL 396 ++ E +++ +V+ +A + + RE++G +L F + + +T + ++ Sbjct: 271 ----AKCELDGIHLTPQVIDFIAANINDNIREIEGVLVKLNFSINVTNVQEVTIDFVRDI 326 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L + + + +++I +V+K+YNI +D+ S R + +V R++ +YL++ +TP S Sbjct: 327 LKEYIKE-TKENIDMDEIIEIVSKYYNIKPSDIRSKSRSKNIVTARKIVIYLARTLTPNS 385 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 P + FG +DH+TV A++ +++ + + K +E LK I Sbjct: 386 MPSLANYFGMKDHSTVSKAMKSIQEEINKNPNFKTIIEELKNKIK 430 >gi|146328959|ref|YP_001208941.1| chromosomal replication initiator protein [Dichelobacter nodosus VCS1703A] gi|146232429|gb|ABQ13407.1| chromosomal replication initiator protein [Dichelobacter nodosus VCS1703A] Length = 442 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 147/470 (31%), Positives = 231/470 (49%), Gaps = 41/470 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + + + L+ + + R S L VP F I +YL ++ Sbjct: 7 PQEKWLNAINSLQAIMDREA--MLLLRSCTLSRSKGQWILFVPNKFALDKINEKYLSSVL 64 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 Q++ +P +E + + +P F Sbjct: 65 FALQKQD--------------VPQIETRLGEAQQNLFTQRKQS----------NDFAPTF 100 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ + F FI G SN A A + S G + NPL I+ GLGK+HL+ Sbjct: 101 NSRLNPHYQFENFIVGKSNDNAYAAVHRV----SKGLLSEDFNPLLIYGGTGLGKSHLMH 156 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRD--NCALNLKDSLRNIDLLLIDDMQFLQ 272 A NA + RV+YLTAE F + +AI++ + + RN D LLIDD+QFL Sbjct: 157 AAGNALCQNGK-KRVMYLTAEEFTNDYINAIKNPKREMSDFINFYRNADALLIDDVQFLS 215 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H NSL D +Q++ DR P E+E L R++SR G++V + DYE Sbjct: 216 GKNRSQEEFFHTFNSLFDKKRQIILTCDRFPKEIEGLADRLKSRFGSGLTVSVAPPDYET 275 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTA 390 R +IL+ S+ E ++ +EV ++A VT++ R+L+GA ++ F I+T Sbjct: 276 RIAILQ-----SKAERLHFSLPKEVEEYIAEKVTSNIRDLEGALRKVYAYCEFNHEIITL 330 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +IA L+ L+ + I+ I+ + A H+NIS D+ S +R+ + PRQ+AM+L+K Sbjct: 331 DIARNALNDLIQAQ-NCDITIDHIRTITATHFNISVEDMDSKKRMAAITLPRQIAMHLAK 389 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S+PEIG+ FG RDH+TV+HA RK++++L+ + + KE +LK I Sbjct: 390 SLTQHSYPEIGKIFGKRDHSTVIHACRKIDELLQENESFYKEYNVLKMRI 439 >gi|311063460|ref|YP_003970185.1| Chromosomal replication initiator protein DnaA [Bifidobacterium bifidum PRL2010] gi|310865779|gb|ADP35148.1| Chromosomal replication initiator protein DnaA [Bifidobacterium bifidum PRL2010] Length = 529 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 134/524 (25%), Positives = 224/524 (42%), Gaps = 72/524 (13%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 I++ LK + P SW + + +V + L V + ++N + Sbjct: 15 IWSDTLRLLKQNPTLSPRD-KSWLEGVVPEAVYGTTIVLCVSNMATQQALQNELNAPLLN 73 Query: 96 LFQEEHSR--IQGVEILVRSVALPSVEKTAS---SPSITKLSPINTNISKSPIILGKQTI 150 + +I+ V+ P + AS + P N S + L +++ Sbjct: 74 ALKIISGNDMFPAFKIVAPQVSQPEPQPPASRHPDTAAKPSEPFPANPSPTVADLAQESY 133 Query: 151 SPVF---------------------------------------------GSPLDSRFVFS 165 P + L+ F Sbjct: 134 MPNSMQSISSIDSISAEMTEANQQPGATAPRIPGEPSFPVRQQKVMRDPETHLNKNSTFD 193 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G SNR A T A ++AE NPL I+ GLGKTHLL AI N ++ + P Sbjct: 194 TFVPGDSNRFARTVALAVAEGTGQ-----EFNPLCIYGGSGLGKTHLLNAIGNYALVKDP 248 Query: 226 NLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 L+V Y+ +E F F A++ N R +D+LLIDD+QFL GK + Sbjct: 249 TLKVRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLGGKEATLEQ 308 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + K++V A+D P L+ + R+ SR G++V + D E R +IL+ Sbjct: 309 FFHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMM 368 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLS 398 +++ + +VL +A T + REL+GA ++ S + +T +A++ L Sbjct: 369 ASMNGT-----STPNDVLNLIAERFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQ 423 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 T +++ DI AK+++++ +D++ R + + RQVAMYL++ MT S Sbjct: 424 DFFTTDV--EIKPTDIIGQTAKYFHLTFDDIVGRARTKNIALARQVAMYLAREMTSMSLV 481 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +IG FG RDHTTV+HA +V ++ + V L + + Sbjct: 482 DIGEVFGGRDHTTVMHAYTRVSDDMQEKPEIYNYVTELTARLKQ 525 >gi|298501757|ref|YP_003723697.1| chromosomal replication initiation protein [Streptococcus pneumoniae TCH8431/19A] gi|298237352|gb|ADI68483.1| chromosomal replication initiation protein [Streptococcus pneumoniae TCH8431/19A] Length = 432 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 138/444 (31%), Positives = 222/444 (50%), Gaps = 26/444 (5%) Query: 63 KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKT 122 + V N+ + +P ++ ++ + + + + I EI + + T Sbjct: 10 ELIKVEENVATIFLP----RSEMEMVWEKQLKDIIVVAGFEIYDAEITPHYIFTKPQDTT 65 Query: 123 ASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 +S + K P + L ++ F FI+G N A++AA + Sbjct: 66 SSQVEEATNLTLYD-------YSPKLVSIPYSDTGLKEKYTFDNFIQGDGNVWAVSAALA 118 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 ++E + Y NPLFI+ GLGKTHLL AI N +K PN RV Y+ AE F+ F Sbjct: 119 VSEDLALTY-----NPLFIYGGPGLGKTHLLNAIGNEILKNIPNARVKYIPAESFINDFL 173 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFCHLLNSLLDSAKQVVAAADR 300 +R K + R++DLLLIDD+Q L GK Q EF + N+L D KQ+V +DR Sbjct: 174 DHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFFNTFNALHDKQKQIVLTSDR 233 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P LE L+ R+ +R G++ + D+E R +IL+ S+ E N + L ++ Sbjct: 234 SPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ-----SKTEHLGYNFQSDTLEYL 288 Query: 361 ARTVTTSGRELDGAFN--QLVFRHSFAPILTAEIADELLSHLVNTGETK-KMRIEDIQRM 417 A ++ R+L+GA N L+ R +T +IA E + + I+ IQ Sbjct: 289 AGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRARKQDVSQMLVIPIDKIQTE 348 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 V Y +S ++ +RR++ +V RQVAMYLS+ +T S P+IG+ FG +DHTTV+HA Sbjct: 349 VGNFYGVSIKEMKGSRRLQNIVLARQVAMYLSRELTDNSLPKIGKEFGGKDHTTVIHAHA 408 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K++ +++ D L+ E+E +K+ I Sbjct: 409 KIKSLIDQDDNLRLEIESIKKKIK 432 >gi|111658629|ref|ZP_01409279.1| hypothetical protein SpneT_02000219 [Streptococcus pneumoniae TIGR4] Length = 432 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 140/445 (31%), Positives = 224/445 (50%), Gaps = 28/445 (6%) Query: 63 KFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSV-ALPSVEK 121 + V N+ + +P ++ ++ + + + + I EI + P Sbjct: 10 ELIKVEENVATIFLP----RSEMEMVWEKQLKDIIVVAGFEIYDAEITPHYIFTKPQDTT 65 Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 ++ T L+ N K P + L ++ F FI+G N A++AA Sbjct: 66 SSQVEEATNLTLYN--------YSPKLVSIPYSDTGLKEKYTFDNFIQGDGNVWAVSAAL 117 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +++E + Y NPLFI+ GLGKTHLL AI N +K PN RV Y+ AE F+ F Sbjct: 118 AVSEDLALTY-----NPLFIYGGPGLGKTHLLNAIGNEILKNIPNARVKYIPAESFINDF 172 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL--IQHEFCHLLNSLLDSAKQVVAAAD 299 +R K + R++DLLLIDD+Q L GK Q EF + N+L D KQ+V +D Sbjct: 173 LDHLRLGEMEKFKKTYRSLDLLLIDDIQSLSGKKVATQEEFFNTFNALHDKQKQIVLTSD 232 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 R P LE L+ R+ +R G++ + D+E R +IL+ S+ E N + L + Sbjct: 233 RSPKHLEGLEERLVTRFSWGLTQTITPPDFETRIAILQ-----SKTEHLGYNFQSDTLEY 287 Query: 360 VARTVTTSGRELDGAFN--QLVFRHSFAPILTAEIADELLSHLVNTGETK-KMRIEDIQR 416 +A ++ R+L+GA N L+ R +T +IA E + + I+ IQ Sbjct: 288 LAGQFDSNVRDLEGAINDITLIARVKKIKDITIDIAAEAIRARKQDVSQMLVIPIDKIQT 347 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 V Y +S ++ +RR++ +V RQVAMYLS+ +T S P+IG+ FG +DHTTV+HA Sbjct: 348 EVGNFYGVSIKEMKGSRRLQNIVLARQVAMYLSRELTDNSLPKIGKEFGGKDHTTVIHAH 407 Query: 477 RKVEKMLETDITLKKEVELLKRLIS 501 K++ +++ D L+ E+E +K+ I Sbjct: 408 AKIKSLIDQDDNLRLEIESIKKKIK 432 >gi|255066616|ref|ZP_05318471.1| DNA replication initiator protein [Neisseria sicca ATCC 29256] gi|255049200|gb|EET44664.1| DNA replication initiator protein [Neisseria sicca ATCC 29256] Length = 516 Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 145/527 (27%), Positives = 240/527 (45%), Gaps = 70/527 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + RL + + +A W L + + + F +K+++ Sbjct: 1 MTLAEFWPQCLRRLHDILPAGQFAQWIAPLTVGE-ENGVWVVYGKNQFACNMLKSQFAAK 59 Query: 93 ITKLFQEEHSRIQGVEILV----------------------------------------- 111 I + E + Sbjct: 60 IEVVRAELAPQQAAFAFKTGAGQHYEMSENAGVVAPEQAALTEEMPKADAQESFSDGTSS 119 Query: 112 RSVALPSVEKTAS-------------SPSITKLSPINTNISKSPIILGKQTISPVFG-SP 157 + PSV KTA+ + + + ++K+ + + + Sbjct: 120 ENSDKPSVAKTAADILAQRMKNLPHENKQPAAVPAESKAVAKAKTEAQRDAEEARYEQTN 179 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F T +EG NR+A AAQ+IAE GY NP F++ S GLGKTHL+QAI Sbjct: 180 LSRDYTFDTLVEGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIG 234 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK Sbjct: 235 NELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRT 294 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 EF +L N + KQ++ D P+++E +D R++SR G+++ L + EMR +IL Sbjct: 295 MEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAIL 354 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIAD 394 + + E ++I +E + VA + ++ REL+GAFN++ F P++ ++A Sbjct: 355 QK-----KAEAAGISIEDEAALFVANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLAR 409 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L ++ K + + I AK+Y I +D+L +R R + RPRQVAM L+K +T Sbjct: 410 TALQDIIAEKH-KIITADTIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELTT 468 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P IG FG RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 469 LSLPSIGDAFGGRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILIQ 515 >gi|15638996|ref|NP_218442.1| chromosomal replication initiation protein [Treponema pallidum subsp. pallidum str. Nichols] gi|189025237|ref|YP_001933009.1| chromosomal replication initiation protein [Treponema pallidum subsp. pallidum SS14] gi|6014982|sp|O83047|DNAA_TREPA RecName: Full=Chromosomal replication initiator protein DnaA gi|226735862|sp|B2S1V1|DNAA_TREPS RecName: Full=Chromosomal replication initiator protein DnaA gi|3322256|gb|AAC64999.1| chromosomal replication initiator protein (dnaA) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017812|gb|ACD70430.1| chromosomal replication initiation protein DnaA [Treponema pallidum subsp. pallidum SS14] gi|291059421|gb|ADD72156.1| chromosomal replication initiator protein DnaA [Treponema pallidum subsp. pallidum str. Chicago] Length = 464 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 137/474 (28%), Positives = 240/474 (50%), Gaps = 20/474 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V E + S+++++ + WF L F + N + ++VP++F + +Y E Sbjct: 4 VGYEVFWNETLSQIRSESTEAEFNMWFAHLFFIASFENAIEIAVPSDFFRIQFSQKYQEK 63 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + F E + V+ +P P + + + Sbjct: 64 LERKFLELSGHPIKLLFAVKK----------GTPHGNTAPPKHVHTYLEKNSPAEVPSKK 113 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F L+ + F F+ G + + +AA S+++ Y NPL I+ VGLGKTHL Sbjct: 114 SFHPDLNRDYTFENFVSGEETKFSHSAAISVSKNPGTSY-----NPLLIYGGVGLGKTHL 168 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFL 271 +QAI + K +L V+Y+TAE F F S + + + K R D+LLIDD+ F Sbjct: 169 MQAIGHEIYKTT-DLNVIYVTAENFGNEFISTLLNKKTQDFKKKYRYTADVLLIDDIHFF 227 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 + K +Q E + N L + KQ++ DRP EL++L R+RSR G+S L + +E Sbjct: 228 ENKDGLQEELFYTFNELFEKKKQIIFTCDRPVQELKNLSSRLRSRCSRGLSTDLNMPCFE 287 Query: 331 MRFSILKNRLAISQKEDPK--LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 R +IL ++ P ++I+++V+ V+ ++++ R+L+GA +++ + + Sbjct: 288 TRCAILIKKIQNYNSTYPHKAIHISDDVVRLVSENISSNIRDLEGALTKIIAFIEVSGSI 347 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +I LL + K + +E I +VA H+NIS +DL +R ++VV PRQ+AM+L Sbjct: 348 TIDIVPSLLKEFFLSARPKHITVETILHVVADHFNISYSDLKGKKRNKSVVYPRQIAMFL 407 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 SK +T S E+G FG RDH+TV++ +K+E + T+ +L+ ++LLK + + Sbjct: 408 SKELTELSTTELGIEFGGRDHSTVIYGCQKIEGEILTNPSLQANLDLLKSKVQD 461 >gi|319788988|ref|YP_004150621.1| chromosomal replication initiator protein DnaA [Thermovibrio ammonificans HB-1] gi|317113490|gb|ADU95980.1| chromosomal replication initiator protein DnaA [Thermovibrio ammonificans HB-1] Length = 471 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 145/469 (30%), Positives = 237/469 (50%), Gaps = 32/469 (6%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 S LK +V P ++ S F+ +K + L V + LK I+ + + ++ Sbjct: 6 ESFLSELKKRVKPSLFKSAFKDMKLAERSDERILLQVKDSVLKEVIEKNLRPVVEEAAKK 65 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 + VE T S + P + + Q S L+ Sbjct: 66 VFGPV-------------KVEFTVPSEPVKTPQPQQLELG---LFKKSQKKEEELQSNLN 109 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 ++ F FI G+SN+ A AA ++AE Y NPLFI+ VGLGKTHL+QAI N Sbjct: 110 PKYTFENFIVGTSNQFAHAAALAVAENPGKAY-----NPLFIYGGVGLGKTHLMQAIGNY 164 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 K+ P +V+Y+T E FM + A++ + + ++ RNID+LLIDD+QF+ GK Q Sbjct: 165 IKKKSPWKKVIYVTTETFMNQLIEALKSDNISSFREKYRNIDVLLIDDIQFIGGKERTQI 224 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L D+ KQVV +DRPP ++ +L R+RSR + G+ + D+E R +ILK Sbjct: 225 EFFHTFNALYDAGKQVVLTSDRPPKDIPTLTERLRSRFEWGLIADIQPPDFETRVAILKR 284 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELL 397 + E + ++++V+ +A + ++ R+L+GA +L + + +T + EL Sbjct: 285 -----KAELEGIEVSDKVIKLIATIIKSNIRQLEGALIKLKAKATLEGKPITERLVRELF 339 Query: 398 SH----LVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 S +++ ++ I+ V+ + + LLS+ R + V RQVAMYL+K + Sbjct: 340 SQESPEERAEKRRREISLKLIKTTVSSEFGVDEELLLSSSRKKQVALARQVAMYLAKRIG 399 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + +I F DHTTVLHAVRKVE++ + D + + +E L+ + E Sbjct: 400 NYPYTQIAAAFNRDDHTTVLHAVRKVEELRKRDEKINQLLEKLELKVRE 448 >gi|297620521|ref|YP_003708658.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] gi|297375822|gb|ADI37652.1| Chromosomal replication initiator protein dnaA [Waddlia chondrophila WSU 86-1044] Length = 450 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 126/475 (26%), Positives = 229/475 (48%), Gaps = 32/475 (6%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 C + +T ++ Q + +WF+ +K + L +P F+K ++ Y Sbjct: 4 CTPCDTSDQWTKFLEYIQKQCSATAFGNWFEPIKVLESTSEGISLEIPNIFVKEYLLTNY 63 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + + +V ++ S P K Sbjct: 64 KKELCAFLPVNSKGEPEIHFVV-----------------SRRSAKKAAFEAIPASSSKAE 106 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L+ + F FIEG +N+ +AA +A Y NPLFIH VGLGK Sbjct: 107 QFKNHDVKLNHNYRFELFIEGPANQFVKSAAMGVAARPGQSY-----NPLFIHGGVGLGK 161 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDM 268 TH+L +I + +R LRV +T E F+ ++R+ LK R+ +D+LL+DD+ Sbjct: 162 THILHSIGHYIHERNKKLRVQCITTEAFINDLVDSLRNKSVDQLKRFYRSQVDVLLVDDI 221 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ +L + EFC+ +L++ KQ+V +D+PPS+L +L R+ +R++ G+ LG+ Sbjct: 222 QFLQNRLNFEEEFCNTFETLINQNKQIVITSDKPPSQL-NLSERMVARMEWGLVAHLGVP 280 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 + E R +IL++ + + L++ V +A + + R+L+GA N+L + Sbjct: 281 ELETRVAILQH-----KAQQKGLDLPNNVAFFIAEHIYNNVRQLEGAINRLSAHCKLLNL 335 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E+ + L +++ K+ +E I + VA + + +DL R + + PRQVAM Sbjct: 336 NITEELVETTLREMLHHAPKSKISVEQILKSVAAVFQVRVSDLRGTSRTKEIALPRQVAM 395 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL+ M + + FG + H+T+LHA + +EK + + TL++++ +++R I+ Sbjct: 396 YLACKMINGTLQTLSDSFG-KAHSTILHACKSIEKKVAENDTLRRQINMVERNIN 449 >gi|157736272|ref|YP_001488955.1| chromosomal replication initiator protein DnaA [Arcobacter butzleri RM4018] gi|167016897|sp|A8EQT0|DNAA_ARCB4 RecName: Full=Chromosomal replication initiator protein DnaA gi|157698126|gb|ABV66286.1| chromosomal replication initiator protein DnaA [Arcobacter butzleri RM4018] Length = 438 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 124/462 (26%), Positives = 224/462 (48%), Gaps = 39/462 (8%) Query: 43 SSRLKNQVGPDVYASWFQRLKF--HSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE 100 + ++ + Y + ++L + S + I V ++ +WIK+++ I F+ Sbjct: 7 LTIIQKEANQIDYERYLKQLVYKKVSSDNKIAIFEVNNKYIASWIKSKFTNLIQHCFEIY 66 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 +EI + N SK I+ + + L+ Sbjct: 67 DGSKPTIEIKL----------------------SNEKKSKKEILKEQTQNESTESTILNP 104 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 + F +F+ G SN++A A+ ++A Y NPLFI+ GLGKTHLLQA+ N + Sbjct: 105 SYTFDSFVVGPSNQMAYNASLAVANKPGIQY-----NPLFIYGGTGLGKTHLLQAVGNHA 159 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 I+ V+Y+T E FM F +I++ + ++ R D+LLIDD+QFL GK Q E Sbjct: 160 IE--KGNTVIYVTIEQFMNDFTFSIKNKNMEHFRNKYRKCDVLLIDDIQFLSGKEQTQEE 217 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N L ++ KQ+V +DR PS++ L R++SR + G++ + + E + +I++ Sbjct: 218 FFHTFNELHNAKKQIVMTSDRLPSQIAGLVDRLKSRFEWGLTADVQIPGLETKIAIIEK- 276 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLS 398 + E + ++ E++ +A + S RE++G ++ S +T + LL Sbjct: 277 ----KSELNGICLSREIINFIATNLDNSIREIEGVLIRINASASLLNQEITLPMVQGLLK 332 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + + +++ DI +VA NI +D+ S +R TV R++ +YL + +T S P Sbjct: 333 EQIKE-TKENVKLPDIINIVANQLNIKPSDIKSKKRTATVANARRIVIYLVRELTHNSMP 391 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +I + G +DH+ + H ++K +++E D K +E LK I Sbjct: 392 DIAKFLGMKDHSAISHNIKKANELIEKDENFKLIIENLKNKI 433 >gi|294507379|ref|YP_003571437.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] gi|294343707|emb|CBH24485.1| Chromosomal replication initiator protein dnaA [Salinibacter ruber M8] Length = 564 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 127/400 (31%), Positives = 210/400 (52%), Gaps = 20/400 (5%) Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS--------PLDSRFVF 164 S P+ + +S T+ + +P SP S L + F Sbjct: 168 SPTGPTTPRPSSPDVADVSDAGRTDDASAPSPPQTDAGSPDERSALYEQAKQHLRPEYTF 227 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F+EG NR+A +AA ++A+ + NPL ++ VGLGKTHL QA+AN +++ Sbjct: 228 DEFVEGDGNRLARSAAFAVAQEPG----STNYNPLLVYGGVGLGKTHLAQAVANYALEHN 283 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 RV+Y++++ F +F ++R+N R DLL++DD+QF K Q EF H+ Sbjct: 284 TAERVLYVSSDRFTSQFVQSVRENRIAAFSSYYRQADLLIVDDVQFFGEKEKTQEEFFHI 343 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N L + KQ+ ADRPP+E+ ++ R+ SR Q G+S + D E R +IL+ + A Sbjct: 344 FNDLHQNGKQIFLCADRPPAEIPGIEERLLSRFQWGLSADIQRPDLETRIAILQRKAARQ 403 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVN 402 + ++ +VL +A+ + ++ R+L+GA +L L + A L + Sbjct: 404 -----DIAVSPDVLELIAQRIDSNVRQLEGALTRLTALVQLDDRTLDLDTARRFLREHTD 458 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 G + +DI VA+++ + + DLLS R +TV + RQ+AMYL + +T S+ IG Sbjct: 459 EG-ADALNADDIIEQVAEYFRLEKGDLLSRSRKQTVAQARQIAMYLCRELTDESYDHIGS 517 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 RFG RDH+TV+HA RK+E+ LE+D L+ ++ L+ + + Sbjct: 518 RFGGRDHSTVIHAYRKIEEDLESDTELQDDISSLQSNLQD 557 Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 5/126 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN----IVHLSVPTNFLKAWIK 86 + + + L+ + +W ++ + + + L VPT F +++ Sbjct: 1 MVPSASDAWRTALRDLRETLPERTVQNWLDPIQPLDLSTDEGSPTLTLQVPTPFGIQYLR 60 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 +R+ +I + E V V E S S + +P + S SP Sbjct: 61 SRFQRSIRQAVSEAVGEPTDVTYQVAPEEERPDEIATDSGS-SGSAPDEPDASSSPQDRP 119 Query: 147 KQTISP 152 S Sbjct: 120 SSAPSS 125 >gi|294673982|ref|YP_003574598.1| chromosomal replication initiator protein DnaA [Prevotella ruminicola 23] gi|294471753|gb|ADE81142.1| chromosomal replication initiator protein DnaA [Prevotella ruminicola 23] Length = 473 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 120/478 (25%), Positives = 222/478 (46%), Gaps = 21/478 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNR 88 + N ++++ ++ V Y +WF + F S V + VP+ ++ +++ Sbjct: 1 MNNNHQALWANCLRLIQANVTEQQYKTWFAPIVFESFDEANRSVLVQVPSRYVFEFLEQY 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVE------KTASSPSITKLSPINTNISKSP 142 Y+ ++K+ + + + V + + S + P +++K+P Sbjct: 61 YVGLLSKVLERVFGTNVKLNYRIVEVKAATAKGHDVTTDVESEGPSLETVPARQHLNKAP 120 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 +L LD++ F +IEG+SN++ T SIAE NP FI+ Sbjct: 121 NVLDAPRQQQ-LNPQLDTKKGFHNYIEGNSNKLPRTVGLSIAEHPGK----TTFNPFFIY 175 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 G GKTHL+ AI + PN RV+Y++A F +F ++R N + + ++ID+ Sbjct: 176 GPSGCGKTHLINAIGLKCCELYPNKRVLYVSARLFQVQFTDSVRQNTTNDFINFYQSIDV 235 Query: 263 LLIDDMQFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 L++DD+Q F H+ + L KQ++ A+DRPP +L + R+ +R G+ Sbjct: 236 LIVDDIQEWVNSPKTLDTFFHIFDHLFRIGKQIILASDRPPVDLTGVKDRLLTRFACGLI 295 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 L + ++ IL + L I +V+ ++A+T S R+L+G N L+ Sbjct: 296 AELEKPNVQLCVDILNAKCKRD-----GLKIPADVIEYIAQTANGSVRDLEGVVNSLMAY 350 Query: 382 HS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 + + ++A+ ++ V + I+DI V HY +S+ + S R R V+ Sbjct: 351 SIVYNSNIDMKLAERVIKRSVKVD-NHPLTIDDILDKVCNHYGVSQQSVFSKSRKRDFVQ 409 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 RQ++MYL++ T IG+ G RDH+TV+H+ VE+ L+ D E+ ++ Sbjct: 410 ARQISMYLAQKHTKMPSSRIGQLIGGRDHSTVIHSCNAVEQRLKIDKAFVAELSSIEN 467 >gi|224283952|ref|ZP_03647274.1| ATPase for DNA replication initiation [Bifidobacterium bifidum NCIMB 41171] gi|313141104|ref|ZP_07803297.1| chromosomal replication initiator protein dnaA [Bifidobacterium bifidum NCIMB 41171] gi|313133614|gb|EFR51231.1| chromosomal replication initiator protein dnaA [Bifidobacterium bifidum NCIMB 41171] Length = 529 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 132/524 (25%), Positives = 222/524 (42%), Gaps = 72/524 (13%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 I++ LK + P SW + + +V + L V + ++N + Sbjct: 15 IWSDTLRLLKQNPTLSPRD-KSWLEGVVPEAVYGTTIVLCVSNMATQQALQNELNAPLLN 73 Query: 96 LFQEEHSR--IQGVEILVRSVALPSVEKTA---SSPSITKLSPINTNISKSPIILGKQTI 150 + +I+ V+ P + + P N S + L +++ Sbjct: 74 ALKIISGNDMFPAFKIVAPQVSQPEPQPPEYRHPDTAAKPSEPFPANPSPTVADLAQESY 133 Query: 151 SPVF---------------------------------------------GSPLDSRFVFS 165 P + L+ F Sbjct: 134 MPNSMQSISSIDSISAEMTEANQQPGATAPRIPGEPSFPVRQQKVMRDPETHLNKNSTFD 193 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G SNR A T A ++AE NPL I+ GLGKTHLL AI N ++ + P Sbjct: 194 TFVPGDSNRFARTVALAVAEGTGQ-----EFNPLCIYGGSGLGKTHLLNAIGNYALVKDP 248 Query: 226 NLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 L+V Y+ +E F F A++ N R +D+LLIDD+QFL GK + Sbjct: 249 TLKVRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLGGKEATLEQ 308 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + K++V A+D P L+ + R+ SR G++V + D E R +IL+ Sbjct: 309 FFHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMM 368 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLS 398 +++ + +VL +A T + REL+GA ++ S + +T +A++ L Sbjct: 369 ASMNGT-----STPNDVLNLIAERFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQ 423 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 T +++ DI AK+++++ +D++ R + + RQVAMYL++ MT S Sbjct: 424 DFFTTDV--EIKPTDIIGQTAKYFHLTFDDIVGRARTKNIALARQVAMYLAREMTSMSLV 481 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +IG FG RDHTTV+HA +V ++ + V L + + Sbjct: 482 DIGEVFGGRDHTTVMHAYTRVSDDMQEKPEIYNYVTELTARLKQ 525 >gi|269118643|ref|YP_003306820.1| chromosomal replication initiator protein DnaA [Sebaldella termitidis ATCC 33386] gi|268612521|gb|ACZ06889.1| chromosomal replication initiator protein DnaA [Sebaldella termitidis ATCC 33386] Length = 452 Score = 389 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 136/479 (28%), Positives = 242/479 (50%), Gaps = 47/479 (9%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY----LETI 93 ++ + LK Q+ + ++ + L H N +++ V + F+K ++ RY +E I Sbjct: 7 LWEKIIKILKYQIDEVEFNTYIKPLNVHEYKDNTLYVWVESTFMKEKVEQRYKLNMMEII 66 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + E S+ + ++ A E S K Sbjct: 67 NDILMMEASQRINIIFELKQAAEEKFENYISVMDTQKK---------------------- 104 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + L+ R+ F F+ G N +A A +I++ Y NPL I+ GLGKTHL+ Sbjct: 105 LINNLNQRYRFENFVVGKGNELANAACIAISQNPGIVY-----NPLLIYGGSGLGKTHLM 159 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA---LNLKDSLRNIDLLLIDDMQF 270 A+ NA + + PN +V+Y T+E F F +++R N +D R +D+LLIDD+QF Sbjct: 160 HAVGNAILDKDPNKKVLYCTSENFNNEFINSLRAGQFANVQNFRDKFRTLDVLLIDDIQF 219 Query: 271 LQ---GKLI---QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 + G+ + EF H N+L + KQ++ ++DR P E+ +L RI SR G+SV + Sbjct: 220 FEKVFGQGTGSVEEEFFHTFNTLQELGKQIIMSSDRLPREIRNLSKRIESRFDSGLSVDV 279 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 DYE R +ILKN + + I++EVL ++ +++++ REL+GA +++ R + Sbjct: 280 QKPDYETRLAILKNI-----ADSKSVIISDEVLEFISSSISSNIRELEGALTRVIARSTL 334 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 +T ++ E L+ L+ ++K + I V+ +Y+I +++ +R + + RQ Sbjct: 335 LRKAITLQLVQEDLADLLKKQQSK-ITANKIITTVSGYYSIPLDEMKGKKRQQEITNARQ 393 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +AM+L K + IG FG RDH+TV+ ++RK+E ++ +I KKE++ +K+ I E Sbjct: 394 IAMFLLKDQLDLNLTTIGGLFGGRDHSTVISSIRKIETRMKEEIVFKKEIDNIKQKIVE 452 >gi|226362895|ref|YP_002780675.1| chromosomal replication initiation protein [Rhodococcus opacus B4] gi|254777911|sp|C1B7S7|DNAA_RHOOB RecName: Full=Chromosomal replication initiator protein DnaA gi|226241382|dbj|BAH51730.1| chromosomal replication initiator protein DnaA [Rhodococcus opacus B4] Length = 528 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 134/500 (26%), Positives = 233/500 (46%), Gaps = 64/500 (12%) Query: 56 ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS-RIQGVEILVRSV 114 +W +K ++ LSVP+ F + I+ E I +++G+ + + + Sbjct: 36 KAWLALVKPLTLAQGFALLSVPSPFAQEAIERDLREPILHALGRHLGEQVEGLGVRIAAP 95 Query: 115 ALPSVEKTASS-----------------PSITKL-------------SPINTNISKSPII 144 E A S PS+T P + + Sbjct: 96 VDDEPESEAPSRERRPDPEPVHTPRHLEPSVTSSGTFRRRRFGSGDDQPYSDTTDFEEVD 155 Query: 145 LGKQTISPVFGS--------------------PLDSRFVFSTFIEGSSNRVALTAAQSIA 184 + ++ V S L++++ F TF+ GSSNR A Sbjct: 156 DDSEALASVHESWPSYFTKPPAGPAPAATGGNSLNAKYTFDTFVIGSSNRF-----AHAA 210 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 V NPLFI + GLGKTHLL A + + + P +RV Y++ E F F ++ Sbjct: 211 AVAIAEAPARAYNPLFIWGASGLGKTHLLHAAGHYAQRLFPGMRVKYVSTEEFTNDFINS 270 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +RD+ + K R D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP Sbjct: 271 LRDDRKVAFKRRYRETDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPK 330 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L +L+ R+R+R + G+ + + E R +IL + +L + ++VL +A Sbjct: 331 QLATLEERLRTRFEWGLITDVQPPELETRIAILSK-----KARMDRLEVPDDVLELIASR 385 Query: 364 VTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 + + REL+GA ++ S L +A+ +L L+ + ++ I + A+++ Sbjct: 386 IERNIRELEGALIRVTAFASLNRQPLDLTLAEVVLRDLMPDSSSLEINAATIMAVTAEYF 445 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 N+S +DL + R + RQ++MYL + +T S P+IG+ FG RDHTTV++A +K+ K Sbjct: 446 NMSIDDLCGPGKARPLASARQISMYLCRELTDLSLPKIGQTFG-RDHTTVMYADKKIRKE 504 Query: 483 LETDITLKKEVELLKRLISE 502 + + +V+ L I + Sbjct: 505 MTERRKVYDQVQELTARIKQ 524 >gi|260579561|ref|ZP_05847432.1| replication initiator protein [Corynebacterium jeikeium ATCC 43734] gi|258602332|gb|EEW15638.1| replication initiator protein [Corynebacterium jeikeium ATCC 43734] Length = 583 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 131/406 (32%), Positives = 217/406 (53%), Gaps = 22/406 (5%) Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP---------- 157 E+ + A + SP+ T+ + T +P T SP S Sbjct: 183 ELAGQYSATENHIDPNPSPTPTRWTNKETAHRPAPRHTSPHTPSPQPSSSFNDGLDGESL 242 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ GSSN A A +++AE + Y NPLFI GLGKTHLL AI Sbjct: 243 LNKNYTFENFVVGSSNNFAAAACRAVAEAPAKAY-----NPLFIWGESGLGKTHLLHAIG 297 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + + QPN+RV Y+++E F ++I ++ + K RN+D+L++DD+QFLQ K Sbjct: 298 HYAKELQPNMRVKYVSSEELTNDFINSIANDTRESFKRRYRNLDMLIVDDIQFLQNKEST 357 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 358 QEEFFHTFNALHQANKQIVLSSDRPPRQLTTLEDRLRTRFEGGLITDVQTPDLETRIAIL 417 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADE 395 + E + + E+V + +A S RELDGA ++ + + LT E A+ Sbjct: 418 TK-----KAESDNVQLPEDVKVLIASRYEKSIRELDGALIRVTAYCALSHEPLTVETAEI 472 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + + ++ + + +VA ++N++ ++L+ R + V+ RQ+AMYL + +T Sbjct: 473 ALRDISPADQDVEIVPQHVIEVVANYFNLTTDELVGKGRAKKFVQARQIAMYLCRELTDL 532 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P++G FG RDHTTV++A R+V + L + + +V+ L + I Sbjct: 533 SLPKLGSAFGGRDHTTVMYAERRVRESLSENKKVFDQVQELTQKIK 578 >gi|262281645|ref|ZP_06059414.1| chromosomal replication initiator protein DnaA [Streptococcus sp. 2_1_36FAA] gi|262262099|gb|EEY80796.1| chromosomal replication initiator protein DnaA [Streptococcus sp. 2_1_36FAA] Length = 450 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 139/470 (29%), Positives = 229/470 (48%), Gaps = 28/470 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + V Q+ + + K + +N + + + K + + + I Sbjct: 5 QEFWARVLELAHTQLKKTTFDFFVAEAKLIKIENNQATIHLDSPVKKLFWEQNLADIILT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 G EI + V +T ++ ++ L ++ SP Sbjct: 65 A---------GFEIYNDQITALYVFETE-----DRVKEEPVYLTSQQPDLTEKKKSPPLA 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L +++ F F++G N+ A AA ++A+ Y NPLFI+ GLGKTHLL A Sbjct: 111 TGLKAKYTFENFVQGDGNQWAKAAALAVADNLGGIY-----NPLFIYGGPGLGKTHLLNA 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N ++ P+ R+ Y+ AE F+ F +R + K R++DLLLIDD+Q L K Sbjct: 166 IGNEVLENTPDARIKYVPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQALSKKV 225 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N+L KQ+V +DR P LE+L+ R+ +R + G++ + ++E R + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDYLENLEERLVTRFKWGLTSDITPPNFETRIA 285 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAEI 392 IL+N + E+ L E + ++A ++ R+L+GA + S I +T +I Sbjct: 286 ILRN-----KIEEFDLIFPNETIEYLAGQFDSNVRDLEGALKDINLLASMKQIKEITIDI 340 Query: 393 ADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E + G + I+ IQ V Y +S ++ RRV+ +V RQVAMYL++ Sbjct: 341 AAEAIRSRKQAGSQLLVIPIDRIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAMYLTRE 400 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IGR FG +DHTTV+HA K++ MLE D L+ E+E +K I Sbjct: 401 LTDNSLPKIGREFGGKDHTTVIHAHGKIKSMLEEDDNLRLEIESIKNKIK 450 >gi|83814277|ref|YP_445493.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] gi|83755671|gb|ABC43784.1| chromosomal replication initiator protein DnaA [Salinibacter ruber DSM 13855] Length = 564 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 127/400 (31%), Positives = 210/400 (52%), Gaps = 20/400 (5%) Query: 113 SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS--------PLDSRFVF 164 S P+ + +S T+ + +P SP S L + F Sbjct: 168 SPTGPTTPRPSSPDVADVSDAGRTDDASAPSPPQTDAGSPDERSALYEQAKQHLRPEYTF 227 Query: 165 STFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQ 224 F+EG NR+A +AA ++A+ + NPL ++ VGLGKTHL QA+AN +++ Sbjct: 228 DEFVEGDGNRLARSAAFAVAQEPG----STNYNPLLVYGGVGLGKTHLAQAVANYALEHN 283 Query: 225 PNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHL 283 RV+Y++++ F +F ++R+N R DLL++DD+QF K Q EF H+ Sbjct: 284 TAERVLYVSSDRFTSQFVQSVRENRIAAFSSYYRQADLLIVDDVQFFGEKEKTQEEFFHI 343 Query: 284 LNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAIS 343 N L + KQ+ ADRPP+E+ ++ R+ SR Q G+S + D E R +IL+ + A Sbjct: 344 FNDLHQNGKQIFLCADRPPAEIPGIEERLLSRFQWGLSADIQRPDLETRIAILQRKAARQ 403 Query: 344 QKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVN 402 + ++ +VL +A+ + ++ R+L+GA +L L + A L + Sbjct: 404 -----DIAVSPDVLELIAQRIDSNVRQLEGALTRLTALVQLDDRTLDLDTARRFLREHTD 458 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 G + +DI VA+++ + + DLLS R +TV + RQ+AMYL + +T S+ IG Sbjct: 459 EG-ADALNADDIIEQVAEYFRLEKGDLLSRSRKQTVAQARQIAMYLCRELTDESYDHIGS 517 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 RFG RDH+TV+HA RK+E+ LE+D L+ ++ L+ + + Sbjct: 518 RFGGRDHSTVIHAYRKIEEDLESDTELQDDISSLQSNLQD 557 Score = 62.8 bits (151), Expect = 1e-07, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 41/126 (32%), Gaps = 5/126 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHN----IVHLSVPTNFLKAWIK 86 + + + L+ + +W ++ + + + L VPT F +++ Sbjct: 1 MVPSASDAWRTALRDLRETLPERTVQNWLDPIQPLDLSTDEGSPTLTLQVPTPFGIQYLR 60 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 +R+ +I + E V V E S S + +P + S SP Sbjct: 61 SRFQRSIRQAVSEAVGEPTDVTYQVAPEEERPDEIATDSGS-SGSAPDEPDASSSPQDRP 119 Query: 147 KQTISP 152 S Sbjct: 120 SSAPSS 125 >gi|311897307|dbj|BAJ29715.1| putative chromosomal replication initiator protein DnaA [Kitasatospora setae KM-6054] Length = 629 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 119/352 (33%), Positives = 192/352 (54%), Gaps = 15/352 (4%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ +++F TF+ G+SNR A V NPLF++ GLGKTHLL Sbjct: 287 NARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLH 341 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + S P RV Y+++E F F ++IRD A + R+ID+LL+DD+QFL K Sbjct: 342 AIGHYSRSLFPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDIDILLVDDIQFLASK 401 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 402 ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLITLEDRLRNRFEWGLITDVTPPELETRI 461 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ + +LN +VL +A +T + REL+GA ++ + + E+ Sbjct: 462 AILRK-----KAIQEQLNAPADVLEFIASRITRNIRELEGALIRVTAFANLNRAPVDLEL 516 Query: 393 ADELLSHLVNTGET---KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 A +L L+ G+ ++ + I + A ++ + DL + R R +V RQ+AMYL Sbjct: 517 AGIVLKDLIPGGDEDAGPEITAQVIMQQTAAYFGLGVEDLCGSSRSRVLVTARQIAMYLC 576 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 577 RELTDLSLPKIGAQFGGRDHTTVMHADRKIRSLMAERRSIYNQVTELTNRIK 628 Score = 57.0 bits (136), Expect = 8e-06, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 41/120 (34%), Gaps = 7/120 (5%) Query: 39 FTIVSSRLKNQVGPDVY----ASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ V RL V +W +R + ++H+ L+ P F K ++ R L +T Sbjct: 12 WSRVVERL---VSDSDVVEKDKNWVRRTQPMWMMHDTALLAAPNEFAKQVLEGRLLPQLT 68 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + E R + ++V + A P E P+ P + Sbjct: 69 EAISHEFGRQVRIAVMVDANAAPVSEPDQDQDQELDHEPVPEWPHPRPEQAYPARAEQPY 128 >gi|281423570|ref|ZP_06254483.1| bacterial DnaA protein helix-turn-helix protein [Prevotella oris F0302] gi|281402390|gb|EFB33221.1| bacterial DnaA protein helix-turn-helix protein [Prevotella oris F0302] Length = 468 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 112/471 (23%), Positives = 219/471 (46%), Gaps = 14/471 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 ++V+ ++ + + ++ V + +WF+ + F + VP+ F+ +++ Sbjct: 1 MKVSPDNRWGKSLALIRQNVTQQQFETWFKPIVFEHYNEATKTILVQVPSLFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +L + + + V + + + + + + Sbjct: 61 FLNLLKTVLYRSFGEGAQLTYRVVTDKEHKLTQDLEADPTDAEPRKERSGANQSPSPMDV 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + + LD F ++EG+SN++A + SIAE S + NP+FI+ G G Sbjct: 121 DKAADIDTQLDPHLNFKNYVEGTSNKLARSLGLSIAEHPSQP----QFNPMFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + P RV+Y++A F +F A + + + ID+L++DD+ Sbjct: 177 KTHLINAIGLRCKQLYPEKRVLYISARLFQSQFVDANLHSSINDFIRFYQTIDMLIVDDI 236 Query: 269 QFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + K+++ +DRPP +L+ ++ R+ +R G+ L Sbjct: 237 QEWVNATKTQDTFFHIFNHLFRNGKRILLVSDRPPVDLKGMNERLLTRFSCGLIAELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + E+ ILK ++ L+I +EV+ +A T S R+L+G N L+ + Sbjct: 297 NVELCTDILK-----AKIRRDGLHIPDEVIRFIASTANGSVRDLEGVVNSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + +++I V H++++ + + S R +V RQV M Sbjct: 352 NVDMRLAERVIKRAVKVDDN-PLTVDEILDTVCNHFSVTLSAVNSKSRKHDLVIARQVTM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 YL++ T IGR G+RDH+TV+H+ +VE L+ D + K+EV ++ Sbjct: 411 YLAQKYTKMPASRIGRLVGNRDHSTVIHSCAQVENRLKVDSSFKEEVNSIE 461 >gi|310286521|ref|YP_003937779.1| chromosomal replication initiator protein DnaA [Bifidobacterium bifidum S17] gi|309250457|gb|ADO52205.1| chromosomal replication initiator protein DnaA [Bifidobacterium bifidum S17] Length = 529 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 132/524 (25%), Positives = 222/524 (42%), Gaps = 72/524 (13%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 I++ LK + P SW + + +V + L V + ++N + Sbjct: 15 IWSDTLRLLKQNPTLSPRD-KSWLEGVVPEAVYGTTIVLCVSNMATQQALQNELNAPLLN 73 Query: 96 LFQEEHSR--IQGVEILVRSVALPSVEKTA---SSPSITKLSPINTNISKSPIILGKQTI 150 + +I+ V+ P + + P N S + L +++ Sbjct: 74 ALKIISGNDMFPAFKIVAPQVSQPEPQPPEYRHPDTAAKPSEPFPANPSPTVADLAQESY 133 Query: 151 SPVF---------------------------------------------GSPLDSRFVFS 165 P + L+ F Sbjct: 134 MPNSMQAISSIDTISAEMTEANQQPGATAPRIPGEPSFPVRQQKVMRDPETHLNKNSTFD 193 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 TF+ G SNR A T A ++AE NPL I+ GLGKTHLL AI N ++ + P Sbjct: 194 TFVPGDSNRFARTVALAVAEGTGQ-----EFNPLCIYGGSGLGKTHLLNAIGNYALVKDP 248 Query: 226 NLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 L+V Y+ +E F F A++ N R +D+LLIDD+QFL GK + Sbjct: 249 TLKVRYVNSEEFTNEFIEALQTPAQSQNRIAEFNRRYREVDVLLIDDIQFLGGKEATLEQ 308 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F H N+L + K++V A+D P L+ + R+ SR G++V + D E R +IL+ Sbjct: 309 FFHTFNALHQANKRIVIASDVAPKNLKGFEARLISRFDSGLTVDVKPPDLETRIAILRMM 368 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLS 398 +++ + +VL +A T + REL+GA ++ S + +T +A++ L Sbjct: 369 ASMNGT-----STPNDVLNLIAERFTENIRELEGALIRVSAVASLSSQPVTRALAEQTLQ 423 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 T +++ DI AK+++++ +D++ R + + RQVAMYL++ MT S Sbjct: 424 DFFTTDV--EIKPTDIIGQTAKYFHLTFDDIVGRARTKNIALARQVAMYLAREMTSMSLV 481 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +IG FG RDHTTV+HA +V ++ + V L + + Sbjct: 482 DIGEVFGGRDHTTVMHAYTRVSDDMQEKPEIYNYVTELTARLKQ 525 >gi|291297539|ref|YP_003508817.1| chromosomal replication initiator protein DnaA [Stackebrandtia nassauensis DSM 44728] gi|290566759|gb|ADD39724.1| chromosomal replication initiator protein DnaA [Stackebrandtia nassauensis DSM 44728] Length = 566 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 121/359 (33%), Positives = 189/359 (52%), Gaps = 12/359 (3%) Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 P + L+ ++ F TF+ GSSNR A AA ++AE + Y NPLFI+ Sbjct: 213 PKPVPPQPATATRLNPKYSFDTFVIGSSNRFAHAAAVAVAESPAKAY-----NPLFIYGD 267 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL AI + + V Y++ E F F +++RD+ + R++D+LL Sbjct: 268 SGLGKTHLLHAIGHYAQNLGNAKSVRYVSTEEFTNDFINSLRDDKRQAFQRRYRDVDILL 327 Query: 265 IDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+QFL+ + Q EF H N+L ++ KQ+V +DR P +L +L+ R+R+R + G+ Sbjct: 328 IDDIQFLERAERTQEEFFHTFNTLHNANKQLVITSDRSPKQLSTLEDRLRTRFEWGLLAD 387 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D E R +IL+ + A + L+ + L +A + S REL+GA ++ S Sbjct: 388 IQPPDLETRIAILQKKAAQER-----LDAPPDALEFIASRINHSIRELEGALIRVTAYAS 442 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +A E+L + GE+ + E I A ++ +S DL + R R + R Sbjct: 443 LTNKPADLALAQEVLRDFIPEGESPDITTEAIMHATADYFGVSDADLRGHSRSRVLANAR 502 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 QVAMYL + +T S P IG+ FG RDHTTV++A RK+ K + L ++ L + Sbjct: 503 QVAMYLCRELTELSLPRIGQAFGGRDHTTVMYADRKIRKQMAEKRALYDQIAELTNRLK 561 Score = 40.4 bits (93), Expect = 0.61, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 21/55 (38%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR 112 W + + + V ++ P F + ++R +T+ R + + VR Sbjct: 17 WLAVTQPLGLFEDTVIIAAPHQFAREAFESRLRPMLTEALARRLGRAVQIAVTVR 71 >gi|68535063|ref|YP_249768.1| chromosomal replication initiator protein [Corynebacterium jeikeium K411] gi|123775787|sp|Q4JYF7|DNAA_CORJK RecName: Full=Chromosomal replication initiator protein DnaA gi|68262662|emb|CAI36150.1| chromosomal replication initiator protein [Corynebacterium jeikeium K411] Length = 583 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 131/406 (32%), Positives = 217/406 (53%), Gaps = 22/406 (5%) Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP---------- 157 E+ + A + SP+ T+ + T +P T SP S Sbjct: 183 ELAGQYSATENHIDPNPSPTPTRWTNKETAHRPAPRHTSPHTPSPQPSSSFNDGLDGESL 242 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ GSSN A A +++AE + Y NPLFI GLGKTHLL AI Sbjct: 243 LNKNYTFENFVVGSSNNFAAAACRAVAEAPAKAY-----NPLFIWGESGLGKTHLLHAIG 297 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 + + + QPN+RV Y+++E F ++I ++ + K RN+D+L++DD+QFLQ K Sbjct: 298 HYAKELQPNMRVKYVSSEELTNDFINSIANDTRESFKRRYRNLDMLIVDDIQFLQNKEST 357 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L + KQ+V ++DRPP +L +L+ R+R+R +GG+ + D E R +IL Sbjct: 358 QEEFFHTFNALHQANKQIVLSSDRPPRQLTTLEDRLRTRFEGGLITDVQTPDLETRIAIL 417 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADE 395 + E + + E+V + +A S RELDGA ++ + + LT E A+ Sbjct: 418 TK-----KAESDNVQLPEDVKVLIASRYEKSIRELDGALIRVTAYCALSHEPLTVETAEI 472 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + + ++ + + +VA ++N++ ++L+ R + V+ RQ+AMYL + +T Sbjct: 473 ALRDISPADQDVEIVPQHVIEVVANYFNLTTDELVGKGRAKKFVQARQIAMYLCRELTDL 532 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S P++G FG RDHTTV++A R+V + L + + +V+ L + I Sbjct: 533 SLPKLGSAFGGRDHTTVMYAERRVRESLSENKKVFDQVQELTQKIK 578 >gi|328946931|ref|YP_004364268.1| Chromosomal replication initiator protein dnaA [Treponema succinifaciens DSM 2489] gi|328447255|gb|AEB12971.1| Chromosomal replication initiator protein dnaA [Treponema succinifaciens DSM 2489] Length = 485 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 136/492 (27%), Positives = 247/492 (50%), Gaps = 34/492 (6%) Query: 32 EVNCESIFTIVSSRLKNQVG----PDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI-- 85 E N + + ++ ++ + WF +++ + +SVP++F+ WI Sbjct: 3 EQNYRAFWDEALKQIHDEYKLKGLESEFKLWF-NMEYVEDTIETITVSVPSDFM--WISM 59 Query: 86 -KNRYLETITKLFQEEHSRIQGVE-ILVRSVALPSVEKTASSPSITKLSPINTNISKSPI 143 Y+ + E + + IL + + E S P + N+NIS Sbjct: 60 VNKGYVNAVESKIAELSGQNINLTYILKKRNSQKESESINSVPKTATIDSENSNISNENE 119 Query: 144 ILGKQTISPVFGSP-------LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 I ++ +P+ P L + F F++G ++ A +A+ + A+ R Sbjct: 120 IDSEKKSAPINSVPTFKIHPQLSEDYTFEKFVKGENSEFAYSASLAAAKEPGR-----RF 174 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQP----NLRVVYLTAEYFMWRFASAIRDNCALN 252 NPL I+ VGLGKTHL+Q+I N P N+++ Y++AE F+ F ++RD + Sbjct: 175 NPLLIYGGVGLGKTHLMQSIGNYIYNNPPEGKENIKICYISAENFLNEFTFSLRDGTSEK 234 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K+ R +D+LL+DD+ FL+ K Q E + L + Q+V DRP SEL ++ R Sbjct: 235 FKNKYRKLDVLLLDDIHFLEDKIQTQEELFYTFEELYRTHAQIVFTCDRPISELNGIEDR 294 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 ++SR G ++ L YE+R + + + + E K ++ E+V+ +A+ + ++ REL Sbjct: 295 LKSRFSMGTTIDLQPPSYEIRKA-----ILLKKLEIKKKSVPEDVIDFIAKNIQSNVREL 349 Query: 372 DGAFNQLVFRH-SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLL 430 ++++ LT +IA +LLS ++ + I+ IQ++VA HYNIS +D+ Sbjct: 350 GACLDKMIGYAELLQKNLTIDIAKKLLSDNISKVSDGSISIDTIQKVVANHYNISLSDIK 409 Query: 431 SNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLK 490 +R + + R +A+Y+++I+T SF EI FG +DH+T++H+ +E L+TD +L Sbjct: 410 GVKRNKKIAYSRHIAIYIARILTESSFNEIAAEFGGKDHSTIMHSYNTIELQLKTDESLN 469 Query: 491 KEVELLKRLISE 502 ++LL R I + Sbjct: 470 STIDLLIREIKD 481 >gi|241759452|ref|ZP_04757556.1| chromosomal replication initiator protein DnaA [Neisseria flavescens SK114] gi|241320234|gb|EER56567.1| chromosomal replication initiator protein DnaA [Neisseria flavescens SK114] Length = 522 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 147/533 (27%), Positives = 241/533 (45%), Gaps = 76/533 (14%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + + RL + +A W L + + + F +K+++ Sbjct: 1 MTLAEFWPLCLCRLHEMLPAGQFAQWIAPLTVGE-ENGVWVVYGKNQFACNMLKSQFAAK 59 Query: 93 I----------TKLFQEEHSRIQGVEILVRSVA--------------------------- 115 I F + E+ ++VA Sbjct: 60 IDAVRAELVPQQAAFAFKPGVGTHYEMAAQTVAPVQVQEVIEVEECVEPVQMPLQTAAPM 119 Query: 116 ---LPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG----------------- 155 PS + + ++T + + P QT +P Sbjct: 120 EENRPSETVSKPAAAMTAAEILAQRMKNLPHEPQVQTTAPAESKAVVKAKTDAQHDAEEA 179 Query: 156 ----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L + F T +EG NR+A AAQ+IAE GY NP F++ S GLGKTH Sbjct: 180 RYEQTNLSRDYTFETLVEGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTH 234 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QAI N +K +P+ +V Y+ ++ ++ F A+R+N K + DLL+IDD+QF+ Sbjct: 235 LVQAIGNELLKNRPDAKVRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFI 294 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 +GK EF +L N + KQ++ D P+++E +D R++SR G+++ L + E Sbjct: 295 KGKDRTMEEFFYLYNHFHNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELE 354 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PIL 388 MR +IL+ + E ++I +E + +A + ++ REL+GAFN++ F P + Sbjct: 355 MRVAILQK-----KAEAAGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPAI 409 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A L ++ K + + I AK+Y I +D+L +R R + RPRQVAM L Sbjct: 410 DMDLARTALQDIIAEKH-KVITADIIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSL 468 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S P IG FG RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 469 TKELTTLSLPSIGDAFGGRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILIQ 521 >gi|289705896|ref|ZP_06502275.1| chromosomal replication initiator protein DnaA [Micrococcus luteus SK58] gi|289557381|gb|EFD50693.1| chromosomal replication initiator protein DnaA [Micrococcus luteus SK58] Length = 515 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 139/484 (28%), Positives = 223/484 (46%), Gaps = 55/484 (11%) Query: 63 KFHSVLHNIVHLSVPTNFLKAWIK-----NRYLETITKLFQEEHSRIQGVEILVRSVALP 117 + ++ N + L+VP + ++ + + +TK F+EE ++ ++ P Sbjct: 36 QPQGLIGNTLLLAVPNETTRETLQGTQVADALTDALTKEFREEILLAISIDANLQPPRTP 95 Query: 118 SVEKTASSPSITKLSPINTNISKSPI---------------------------------- 143 S E SS + + ++ P Sbjct: 96 SSEARRSSLAGGPAAAAAPDVELPPAATAATSRRAVAEELPGFRIEPPADVAPAAPAAPN 155 Query: 144 ----ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPL 199 + S L+ R+ F TF+ GSSNR A NPL Sbjct: 156 GNGKPTPAPPSTSAETSRLNDRYHFETFVIGSSNRF-----AHAAANAVAEAPAKAYNPL 210 Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 FI+ GLGKTHLL AI + + + P LRV Y+ +E F F ++IR + + K RN Sbjct: 211 FIYGESGLGKTHLLHAIGHYARRLYPGLRVRYVNSEEFTNDFINSIRHDEGASFKQVYRN 270 Query: 260 IDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +D+LLIDD+QFL K EF H N+L ++ KQVV +D PP +L + R+RSR + Sbjct: 271 VDILLIDDIQFLADKEATVEEFFHTFNTLYNNNKQVVITSDLPPKQLSGFEDRLRSRFEW 330 Query: 319 GVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL 378 G+ + D E R +IL+ + E L E L ++A ++T+ REL+GA ++ Sbjct: 331 GLITDIQPPDLETRIAILRK-----KAEAEGLVAPPEALEYIASRISTNIRELEGALIRV 385 Query: 379 VFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRT 437 S + E+A+ +L L+ ++ E I +++N++ +L S R RT Sbjct: 386 TAFASLNRQTVDIELAEHVLKDLITDETAHEITPELILHATGEYFNLTLEELTSKSRTRT 445 Query: 438 VVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 +V RQ+AMYL + +T S P+IG+ G RDHTTV+HA RK+ +++ T+ +V L Sbjct: 446 LVTARQIAMYLLRELTEMSLPKIGQVLGGRDHTTVIHADRKIRELMAERRTIYNQVTELT 505 Query: 498 RLIS 501 I Sbjct: 506 NEIK 509 >gi|46445941|ref|YP_007306.1| chromosomal replication initiation protein [Candidatus Protochlamydia amoebophila UWE25] gi|46399582|emb|CAF23031.1| putative replication initiation protein dnaA [Candidatus Protochlamydia amoebophila UWE25] Length = 461 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 132/477 (27%), Positives = 239/477 (50%), Gaps = 31/477 (6%) Query: 27 DKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 +K L ++++T +K + P + +W ++ V L +P F++ ++ Sbjct: 11 NKNMLTSETQNVWTQFLQFVKTRCSPAAFGNWLAPIRVIDCSTEEVTLEIPNIFVQEYLL 70 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 + Y + + + S + ++ + P + P + +IS S Sbjct: 71 SNYKKDLCAFLPVDMSGEPAIRFII------------APPQKKIIPPNHFSISSSQ---- 114 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 K+ SP L++ + F FIEG +N+ +AA +A Y NPLFIH VG Sbjct: 115 KEEQSPNSDVKLNNNYRFENFIEGPTNQFVKSAAMGVALRPGQSY-----NPLFIHGGVG 169 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLI 265 LGKTH+L +I + + LRV +T E F+ ++R+ +K R+ ID+LL+ Sbjct: 170 LGKTHILHSIGHYIKENHKKLRVQCITTEAFINDLVDSLRNKSVDRMKKFYRSEIDVLLV 229 Query: 266 DDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFLQ +L + E + +L + Q+V +D+PPS L+ L R +++GG+ + Sbjct: 230 DDIQFLQNRLNFEEELSYTFEALKNKGAQIVITSDKPPSLLK-LSERTIGKMEGGLVAHM 288 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 G+ + E R +IL+ + E L+I +V +A + + R+L+GA N+L Sbjct: 289 GIPELETRVAILQ-----YKAEQKGLHIPHKVAFFIAEHIHNNVRQLEGAINRLSAHCRL 343 Query: 385 API-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + +T E+ L ++ +K+ +E I + VA + + +DL + R + + PRQ Sbjct: 344 LDLNITEELVSRTLREMLQQAPREKISVEQILKSVAAVFQVRVSDLRGSTRTKDIALPRQ 403 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 VAMYL+K M S +G FG + H+T+LHA + +EK + +D TL++++ +++R I Sbjct: 404 VAMYLAKEMINESLIMLGASFG-KTHSTILHACKNIEKKVASDETLRRQIGMVRRNI 459 >gi|302205158|gb|ADL09500.1| Chromosomal replication initiation protein [Corynebacterium pseudotuberculosis C231] gi|308275398|gb|ADO25297.1| Chromosomal replication initiation protein [Corynebacterium pseudotuberculosis I19] Length = 603 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 119/384 (30%), Positives = 202/384 (52%), Gaps = 17/384 (4%) Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 + I + P S +P + + +P L+ + F +++ SN++ +AA ++A Sbjct: 225 TEHIQEPMPTEQIPSGTPRTREQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVA 284 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 E + Y NPLFI GLGKTHL+ A+ N + P LR+ Y+++E F + ++ Sbjct: 285 EKPARAY-----NPLFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINS 339 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +RD+ K R +D+L++DD+QFLQGK Q EF H N+L + KQ+V ++DRPP Sbjct: 340 VRDDRQEAFKRKYRELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPK 399 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L +L+ R+R+R Q G+ + D E R +IL + + + + E + +A Sbjct: 400 QLTTLEDRLRTRFQAGLIADIYPPDLETRIAIL-----MKKAASESIVADREAIELIASR 454 Query: 364 VTTSGRELDGAFNQLVFRHSFAPI------LTAEIADELLSHLVNTGETKKMRIEDIQRM 417 TS REL+GAF ++ S + IA++ L ++ +++ I Sbjct: 455 FNTSIRELEGAFIRVSAYASLMSPDKGKHRIDLRIAEKALEDMMPEQANEEITATTILAA 514 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 A+++ + N L + + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A R Sbjct: 515 TAEYFEMDVNALKGSGKTRAVAHARQLAMYLCRELTDLSLPKIGEQFGGKDHTTVMYADR 574 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+ K + E++LL + I Sbjct: 575 KIRKEITEKKETYDEIQLLTQQIK 598 >gi|157149691|ref|YP_001449323.1| chromosomal replication initiation protein [Streptococcus gordonii str. Challis substr. CH1] gi|157074485|gb|ABV09168.1| chromosomal replication initiator protein DnaA [Streptococcus gordonii str. Challis substr. CH1] Length = 450 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 139/470 (29%), Positives = 230/470 (48%), Gaps = 28/470 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 + + V Q+ + + + + +N + + + K + + + I Sbjct: 5 QEFWARVLELAHTQLKKTTFDFFVAEARLIKIENNQATIHLDSPVKKLFWEQNLADIILT 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 G EI ++ V +T ++ ++ L ++ SP Sbjct: 65 A---------GFEIYNDQISALYVFETE-----ERVKEEPIYLTSQQPDLTEKKKSPPLA 110 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L S++ F F++G N+ A AA ++A+ Y NPLFI+ GLGKTHLL A Sbjct: 111 TGLKSKYTFENFVQGDGNQWAKAAALAVADNLGGIY-----NPLFIYGGPGLGKTHLLNA 165 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N ++ P+ R+ Y+ AE F+ F +R + K R++DLLLIDD+Q L K Sbjct: 166 IGNEVLENTPDARIKYVPAETFINDFLEHLRLGEMDSFKKIYRSLDLLLIDDIQALSKKV 225 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N+L KQ+V +DR P LE+L+ R+ +R + G++ + ++E R + Sbjct: 226 STQEEFFNTFNALHGENKQIVLTSDRSPDYLENLEERLVTRFKWGLTSDITPPNFETRIA 285 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAEI 392 IL+N + E+ L E + ++A ++ R+L+GA + S I +T +I Sbjct: 286 ILRN-----KIEEFDLIFPNETIEYLAGQFDSNVRDLEGALKDINLLASMKQIKEITIDI 340 Query: 393 ADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 A E + G + I+ IQ V Y +S ++ RRV+ +V RQVAMYL++ Sbjct: 341 AAEAIRSRKQAGSQLLVIPIDRIQTEVGNFYGVSVKEMKGTRRVQNIVLARQVAMYLTRE 400 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IGR FG +DHTTV+HA K++ MLE D L+ E+E +K I Sbjct: 401 LTDNSLPKIGREFGGKDHTTVIHAHGKIKSMLEEDDNLRLEIESIKNKIK 450 >gi|282880759|ref|ZP_06289455.1| chromosomal replication initiator protein DnaA [Prevotella timonensis CRIS 5C-B1] gi|281305293|gb|EFA97357.1| chromosomal replication initiator protein DnaA [Prevotella timonensis CRIS 5C-B1] Length = 470 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 116/475 (24%), Positives = 224/475 (47%), Gaps = 18/475 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + V+ + + ++ V Y +WF+ + + S + L VP+ F+ +++ Sbjct: 1 MNVSPNEAWDKTLTLIRENVSEQQYNTWFKPIVYESFEESTRTLLVQVPSPFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT---KLSPINTNISKSPIIL 145 Y++ ++K+ + ++ + + + + + K T +++SP L Sbjct: 61 YIDLLSKVLRRTFCDQIRLKYRIVTDQEHHLTQDVEAEQTDLSVKTQLAKTRVNESPTTL 120 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 L+ F+ +IEG SN++ + SIAE + NP+F++ Sbjct: 121 DAAQPQQ-LDPNLNPHQTFNNYIEGDSNKLPRSVGLSIAEHPRK----TQFNPMFVYGPS 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GKTHL+ AI + + RV+Y++A F ++ +A+ N + + + IDLL++ Sbjct: 176 GCGKTHLINAIGMRTKQLYAQKRVLYVSARLFQVQYTNAVLQNSINDFINFYQTIDLLIV 235 Query: 266 DDMQFL-QGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q Q F H+ N L + K+++ A+DRPP +L+ ++ R+ +R G+ L Sbjct: 236 DDIQEWMTATKTQDTFFHIFNHLFRNGKRIILASDRPPVDLKGMNERLLTRFSCGLIAEL 295 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS- 383 + ++ IL S+ L I E+V+ +A T S R+L+G N L+ Sbjct: 296 EKPNVQLCIDILN-----SKIRKDGLQILEDVVQFIAETANGSVRDLEGVINSLLAYSVV 350 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + +A ++ V K + I++I V H+N+S + + R + +V RQ Sbjct: 351 YNSTVDMRLAQRVIQRAVKID-DKPLTIDEILEKVCNHFNVSVSAVNGRSRKQDLVTARQ 409 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V+MYL++ T IG+ G RDH+TV+H+ +VE+ L+ D E+ ++ Sbjct: 410 VSMYLAQKYTKMPASRIGKLVGGRDHSTVIHSCSRVEQRLQVDSMFSNELMSIEN 464 >gi|300857418|ref|YP_003782401.1| chromosomal replication initiator protein [Corynebacterium pseudotuberculosis FRC41] gi|300684872|gb|ADK27794.1| chromosomal replication initiator protein [Corynebacterium pseudotuberculosis FRC41] Length = 526 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 119/384 (30%), Positives = 202/384 (52%), Gaps = 17/384 (4%) Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 + I + P S +P + + +P L+ + F +++ SN++ +AA ++A Sbjct: 148 TEHIQEPMPTEQIPSGTPRTREQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVA 207 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 E + Y NPLFI GLGKTHL+ A+ N + P LR+ Y+++E F + ++ Sbjct: 208 EKPARAY-----NPLFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINS 262 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +RD+ K R +D+L++DD+QFLQGK Q EF H N+L + KQ+V ++DRPP Sbjct: 263 VRDDRQEAFKRKYRELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPK 322 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L +L+ R+R+R Q G+ + D E R +IL + + + + E + +A Sbjct: 323 QLTTLEDRLRTRFQAGLIADIYPPDLETRIAIL-----MKKAASESIVADREAIELIASR 377 Query: 364 VTTSGRELDGAFNQLVFRHSFAPI------LTAEIADELLSHLVNTGETKKMRIEDIQRM 417 TS REL+GAF ++ S + IA++ L ++ +++ I Sbjct: 378 FNTSIRELEGAFIRVSAYASLMSPDKGKHRIDLRIAEKALEDMMPEQANEEITATTILAA 437 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 A+++ + N L + + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A R Sbjct: 438 TAEYFEMDVNALKGSGKTRAVAHARQLAMYLCRELTDLSLPKIGEQFGGKDHTTVMYADR 497 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 K+ K + E++LL + I Sbjct: 498 KIRKEITEKKETYDEIQLLTQQIK 521 >gi|303235975|ref|ZP_07322578.1| chromosomal replication initiator protein DnaA [Prevotella disiens FB035-09AN] gi|302483848|gb|EFL46840.1| chromosomal replication initiator protein DnaA [Prevotella disiens FB035-09AN] Length = 468 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 129/476 (27%), Positives = 236/476 (49%), Gaps = 22/476 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 + V + + +K+ V +A+WF+ + F + + VP+ F+ +++ Sbjct: 1 MNVQLNAQWKQCLQLIKDNVTEQQFATWFEPILFEMFDKDTHTILVQVPSLFIYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSI----TKLSPINTNISKSPII 144 Y++ + K+ + + V + ++ + S ++ TKL N S +P+ Sbjct: 61 YVDLLNKVITRVFGKGIRLNYRVVTDKAHNLTQDLQSENVEHVETKLPTNRGNQSPTPLD 120 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + Q I S LD FS +IEG SN++ + SIAE + T + NP+FI+ Sbjct: 121 IAPQEI----DSQLDLHKSFSNYIEGDSNKLPRSIGLSIAEHPN----TTQFNPMFIYGP 172 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G GKTHL+ AI + P RV+Y++A F ++ +++ +N + + ID+L+ Sbjct: 173 SGCGKTHLINAIGLKIKQLYPQKRVLYISARLFQVQYTNSVLNNTTNDFIGFYQTIDVLI 232 Query: 265 IDDMQ-FLQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+Q ++ Q F H+ N L + K++V A DRPP EL+ ++ R+ +R G+ Sbjct: 233 VDDIQEWITSIKTQDTFFHIFNHLFMNGKRIVLACDRPPVELKGMNDRLLTRFSCGLIAE 292 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 L + ++ IL +++ LNI +EV+ +A+T S R+L G N L+ Sbjct: 293 LEKPNIQLCIDILNSKIKRD-----GLNIPDEVVQFIAQTANGSVRDLQGIINSLLAYSV 347 Query: 384 -FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + + +A+ ++ V + + I++I V H+N++ N + S R + +V R Sbjct: 348 VYNSNVDMRLAERVIKRAVKID-DEPLTIDEILDKVCAHFNVTTNAVNSRSRKQDIVLAR 406 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 QV+MYL++ T IG+ G RDH+TVLH+ ++EK LE D E+ ++ Sbjct: 407 QVSMYLAQKFTKMPAKRIGKLVGGRDHSTVLHSCSQIEKRLEVDKGFNAELSSIEN 462 >gi|327398174|ref|YP_004339043.1| Chromosomal replication initiator protein dnaA [Hippea maritima DSM 10411] gi|327180803|gb|AEA32984.1| Chromosomal replication initiator protein dnaA [Hippea maritima DSM 10411] Length = 417 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 127/453 (28%), Positives = 239/453 (52%), Gaps = 53/453 (11%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + V LKN+V ++ V + + L++P +K +K++Y + + + Sbjct: 2 WEKVIENLKNKVETQDLEK-LSLVEPIFVSEDKITLAIPGEQIKELLKSKYKNQLKESLK 60 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 +++ +E+++++ L Sbjct: 61 LIFNKLPKIELIIKTQDKD---------------------------------------NL 81 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 +S++ F F+ G SN++A A+ +++E + Y NPLFI+ VGLGKTHLL AI N Sbjct: 82 NSKYGFENFVVGPSNQLAYAASVAVSENPAKAY-----NPLFIYGGVGLGKTHLLHAIGN 136 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + K PN RV+Y+++E F ++I+ ++ RN+D LLIDD+QF+ K + Sbjct: 137 SIKKNNPNARVLYISSEEFTNELINSIQYKKMTQFRNKYRNLDCLLIDDIQFISKKERTE 196 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H N+L +S KQ++ +D+PP+E+ ++ R++SR G+ V + + E R +I++ Sbjct: 197 EEFFHTFNALYESQKQIIITSDKPPNEIPDIENRLKSRFSWGLIVDIQPPELETRIAIIR 256 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADEL 396 + E L I++E++ +A +++++ RE++GA ++ S +T + + Sbjct: 257 K-----KAELFNLEISQEIIEFIASSISSNVREIEGALIKISAYKSIMRKPVTLNLVKSI 311 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L ++ + K + E+IQ+ VAKH+NIS + L S+ R + ++ PR++AMYL++ +T S Sbjct: 312 LQDII-IRKEKMLTAENIQKTVAKHFNISVDSLKSSTRKKEILIPREIAMYLTRKITKNS 370 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 PEI +FG + H T+++A +++E +E DI L Sbjct: 371 LPEIKAKFGVKSHATIINACKRIESEMEKDINL 403 >gi|329938638|ref|ZP_08288034.1| chromosomal replication initiator protein [Streptomyces griseoaurantiacus M045] gi|329302129|gb|EGG46021.1| chromosomal replication initiator protein [Streptomyces griseoaurantiacus M045] Length = 721 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 118/389 (30%), Positives = 190/389 (48%), Gaps = 14/389 (3%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 P + P T + L+ +++F TF+ G+SNR Sbjct: 340 PGTGHVHRGGPVGPHLPTTGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASNRF- 398 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A V NPLFI+ GLGKTHLL AI + + P RV Y+++E Sbjct: 399 ----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEE 454 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVV 295 F F ++IRD + + R +D+LL+DD+QFL K Q EF H N+L ++ KQ+V Sbjct: 455 FTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIV 514 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + +LN E Sbjct: 515 LSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLNAPPE 569 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVN--TGETKKMRIE 412 VL +A ++ + REL+GA ++ S + + + +L L+ ++ Sbjct: 570 VLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDTAPEITAP 629 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG +FG RDHTTV Sbjct: 630 AIMAATAAYFGLTVEDLCGTSRGRALVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTV 689 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 +HA RK+ ++ ++ +V L I Sbjct: 690 MHADRKIRALMAERRSIYNQVTELTNRIK 718 Score = 54.3 bits (129), Expect = 4e-05, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 4/113 (3%) Query: 34 NCESIFTIVSSRLKNQVGPDVYAS----WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + + W +R + +++ + L+VP F K ++ R Sbjct: 7 DLAAVWPRVLEQLLGEGRGQGVETKDEHWIRRCQPLALVADTALLAVPNEFAKNVLEGRL 66 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 +++ E R + I V + + ++P+ + + ++ Sbjct: 67 APVVSETLSRECGRPIRIAITVDASSGEPAAPQPTAPARYEEPELPAPQNREA 119 >gi|226303490|ref|YP_002763448.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis PR4] gi|229491154|ref|ZP_04384982.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis SK121] gi|259645258|sp|C0ZLE1|DNAA_RHOE4 RecName: Full=Chromosomal replication initiator protein DnaA gi|226182605|dbj|BAH30709.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis PR4] gi|229321892|gb|EEN87685.1| chromosomal replication initiator protein DnaA [Rhodococcus erythropolis SK121] Length = 520 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 131/486 (26%), Positives = 233/486 (47%), Gaps = 56/486 (11%) Query: 62 LKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF-QEEHSRIQGVEILV--------- 111 ++ ++ LSVP+ F + I+ E I + + +++G+ + + Sbjct: 42 VRPLTLAQGFALLSVPSPFAQETIERDLREPILQALGRHLGGQVEGLGVRIALEDDADAP 101 Query: 112 ----------------------------RSVALPSVEKTASSPSITKLSPINTNISKS-P 142 PS +TA + + ++ +S P Sbjct: 102 AEPVEERTGSRQFESVNSSGAYRRRRFTEGDGEPSDSETAETEEVDDDREALASVHESWP 161 Query: 143 IILGKQTISPVFG----SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNP 198 K +P + L++++ F TF+ GSSNR A V NP Sbjct: 162 SYFTKPPATPSASGSGANSLNAKYTFDTFVIGSSNRF-----AHAAAVAIAEAPARAYNP 216 Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 LFI + GLGKTHLL A + + + P +RV Y++ E F F +++RD+ + K R Sbjct: 217 LFIWGASGLGKTHLLHAAGHYAQRLFPGMRVKYVSTEEFTNDFINSLRDDRKVAFKRRYR 276 Query: 259 NIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQ 317 D+LL+DD+QF++GK IQ EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + Sbjct: 277 ETDVLLVDDIQFIEGKEGIQEEFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFE 336 Query: 318 GGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ 377 G+ + + E R +IL + +L + +VL +A + + REL+GA + Sbjct: 337 WGLITDVQPPELETRIAILSK-----KARMDRLEVPHDVLELIASRIERNIRELEGALIR 391 Query: 378 LVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVR 436 + S L +A+ +L L+ + ++ I + A+++N+S +DL + R Sbjct: 392 VTAFASLNRQPLDLTLAEVVLRDLMPDSSSLEINAATIMAVTAEYFNMSIDDLCGPGKAR 451 Query: 437 TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 + + RQ++MYL + +T S P+IG+ FG RDHTTV++A +K+ K + + +V+ L Sbjct: 452 PLAQARQISMYLCRELTDLSLPKIGQTFG-RDHTTVMYADKKIRKEMTERRKVYDQVQEL 510 Query: 497 KRLISE 502 I + Sbjct: 511 TARIKQ 516 >gi|91762459|ref|ZP_01264424.1| Chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1002] gi|91718261|gb|EAS84911.1| Chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1002] Length = 470 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 166/473 (35%), Positives = 277/473 (58%), Gaps = 26/473 (5%) Query: 32 EVNCESI-FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +V+ E++ + ++ +KN++G D+Y SW +++ F +++ V LSV T F++ WI +RYL Sbjct: 12 DVSSEALDWALIQKDMKNKLGSDIYESWLRKIDFVEEMNSYVLLSVSTRFIRDWITSRYL 71 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I ++ + + +E + +EK + + + N + S I Sbjct: 72 DQILQIVKTYKKDLTRIEFKI-------IEKNSENEIENNFTKNENNENVSFI-----KD 119 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + + + +D F FI G+SN++A A+ ++E SH NPL+I+ VG+GKT Sbjct: 120 TYLQYNRIDPNKRFDNFITGTSNKLAYEASMKVSENISH------YNPLYIYGGVGMGKT 173 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL +I + ++ +V++++AE FM++F +I+ N + K+ RN D+LLIDD+QF Sbjct: 174 HLLNSIGLSLKEKN---KVMFISAERFMYQFVKSIKSNDMVKFKEYFRNTDILLIDDIQF 230 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK +Q EF H N+LLD QV+ +ADR P++L + RI+SR GG+ V + DY Sbjct: 231 MNGKEAMQEEFFHTFNALLDKGSQVIISADRAPNKLSRIQDRIKSRFAGGLVVDIQKPDY 290 Query: 330 EMRFSILKNRLAISQKEDPK-LNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPI 387 E+R I++ + +NI+EE+ ++ +TTS REL GA N++V F + + Sbjct: 291 ELRNKIVRQKTEELNIFYSNQVNISEEIQKFISTEITTSIRELVGAINRVVSFSRIYNKV 350 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 +L L+N GE K + I+ IQ V K + IS++++LS+RR R +VRPRQ A+Y Sbjct: 351 PNLSEVKVVLKDLLNIGENK-VTIDLIQSTVCKFFKISKSEMLSSRRSRYLVRPRQTAIY 409 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L+KI+T +S PEIGR F +RDHTT++H+V+ +EK+ E D + + LK I Sbjct: 410 LTKILTSKSLPEIGREFSNRDHTTIIHSVKTIEKLKEKDPEMTNNINNLKNQI 462 >gi|302329715|gb|ADL19909.1| Chromosomal replication initiation protein [Corynebacterium pseudotuberculosis 1002] Length = 603 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 120/384 (31%), Positives = 202/384 (52%), Gaps = 17/384 (4%) Query: 125 SPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 + I + P S +P + + +P L+ + F +++ SN++ +AA ++A Sbjct: 225 TEHIQEPMPTEQIPSGTPRTREQPSFNPDRALALNPHYTFDSYVVSDSNKLPCSAAIAVA 284 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 E + Y NPLFI GLGKTHL+ A+ N + P LR+ Y+++E F + ++ Sbjct: 285 EKPARAY-----NPLFIWGDSGLGKTHLMHAVGNYAQYLNPRLRIKYVSSEEFTNEYINS 339 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 +RD+ K R +D+L++DD+QFLQGK Q EF H N+L + KQ+V ++DRPP Sbjct: 340 VRDDRQEAFKRKYRELDILMVDDIQFLQGKEGTQEEFFHTFNALYQANKQIVLSSDRPPK 399 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 +L +L+ R+R+R Q G+ + D E R +IL + + + + E + +A Sbjct: 400 QLTTLEDRLRTRFQAGLIADIYPPDLETRIAIL-----MKKAASESIVADREAIELIASR 454 Query: 364 VTTSGRELDGAFNQLVFRHSFAPI------LTAEIADELLSHLVNTGETKKMRIEDIQRM 417 TS REL+GAF ++ S + IA++ L ++ +++ I Sbjct: 455 FNTSIRELEGAFIRVSAYASLMSPDKGKHRVDLRIAEKALEDMMPEQANEEITATTILAA 514 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 A+++ + N L + + R V RQ+AMYL + +T S P+IG +FG +DHTTV++A R Sbjct: 515 TAEYFEMDVNALKGSGKTRAVAHARQLAMYLCRELTDLSLPKIGEQFGGKDHTTVMYADR 574 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 KV K + E++LL + I Sbjct: 575 KVRKEITEKKETYDEIQLLTQQIK 598 >gi|34539881|ref|NP_904360.1| chromosomal replication initiation protein [Porphyromonas gingivalis W83] gi|188993865|ref|YP_001928117.1| chromosomal replication initiation protein [Porphyromonas gingivalis ATCC 33277] gi|61212688|sp|Q7MXZ1|DNAA_PORGI RecName: Full=Chromosomal replication initiator protein DnaA gi|226735831|sp|B2RGM5|DNAA_PORG3 RecName: Full=Chromosomal replication initiator protein DnaA gi|34396192|gb|AAQ65259.1| chromosomal replication initiator protein DnaA [Porphyromonas gingivalis W83] gi|188593545|dbj|BAG32520.1| chromosomal replication initiator protein DnaA [Porphyromonas gingivalis ATCC 33277] Length = 473 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 122/478 (25%), Positives = 220/478 (46%), Gaps = 22/478 (4%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 N I+ L++ V Y +WF + S+ + + L VP+ F +++ ++E Sbjct: 6 TNVNEIWDACLRILQDIVDERAYRTWFLPIIPVSIEGDTLTLQVPSQFFCEFLEGNFVEQ 65 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL------- 145 + + + ++ S K + ++ + + + L Sbjct: 66 LRTVLGRVIGP--NASLQYNALVDNSSPKYPGTVTLAGCADGGQAAEQFDVNLLHRHMPN 123 Query: 146 -GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + + F + L+SR F F + N VA + A++IA +NP FI+ + Sbjct: 124 AATHSEAQDFDTQLNSRLNFRNFYQSECNYVARSVAEAIAASPG----NTPMNPFFIYGA 179 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 G+GKTHL A+ + P L+V+Y+++ F +F +A R + + +D+L+ Sbjct: 180 SGVGKTHLCHALGLRVREMHPRLKVLYVSSHLFEMQFTTAARMGTINDFIAFYQQVDVLI 239 Query: 265 IDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 IDD+Q+L GK Q F + N L KQ+V +D+PP +L ++ R+ +R+ G V Sbjct: 240 IDDIQWLIGKKKTQLAFFQVFNHLYMLGKQIVLTSDKPPVDLNGMEERLVTRMAGATCVK 299 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + D ++R IL+ + + ++E VL +A V + REL+G L+ Sbjct: 300 IERPDLKLRREILQQ-----RTLQSGVRLDESVLNFIAENVCDNVRELEGTLVSLITNSV 354 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 + A ++ V E K++ IE IQ+ V++ + + + S R + +V+ R Sbjct: 355 VVGKEIDLTFAKRIVRQAVRL-EKKEVTIECIQQAVSRVFQVQIEQMKSKSRKQDIVQAR 413 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 QV M+LSK T +S IG G R+H TVLH R V +E + + + VE ++LI Sbjct: 414 QVVMFLSKKHTAQSLSAIGELMGGRNHATVLHGCRCVTNEMEMNASFRSSVERAEQLI 471 >gi|61212967|sp|Q6MEG8|DNAA2_PARUW RecName: Full=Chromosomal replication initiator protein DnaA 2 Length = 448 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 131/474 (27%), Positives = 237/474 (50%), Gaps = 31/474 (6%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 L ++++T +K + P + +W ++ V L +P F++ ++ + Y Sbjct: 1 MLTSETQNVWTQFLQFVKTRCSPAAFGNWLAPIRVIDCSTEEVTLEIPNIFVQEYLLSNY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + + S + ++ + P + P + +IS S K+ Sbjct: 61 KKDLCAFLPVDMSGEPAIRFII------------APPQKKIIPPNHFSISSSQ----KEE 104 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 SP L++ + F FIEG +N+ +AA +A Y NPLFIH VGLGK Sbjct: 105 QSPNSDVKLNNNYRFENFIEGPTNQFVKSAAMGVALRPGQSY-----NPLFIHGGVGLGK 159 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDM 268 TH+L +I + + LRV +T E F+ ++R+ +K R+ ID+LL+DD+ Sbjct: 160 THILHSIGHYIKENHKKLRVQCITTEAFINDLVDSLRNKSVDRMKKFYRSEIDVLLVDDI 219 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFLQ +L + E + +L + Q+V +D+PPS L+ L R +++GG+ +G+ Sbjct: 220 QFLQNRLNFEEELSYTFEALKNKGAQIVITSDKPPSLLK-LSERTIGKMEGGLVAHMGIP 278 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 + E R +IL+ + E L+I +V +A + + R+L+GA N+L + Sbjct: 279 ELETRVAILQ-----YKAEQKGLHIPHKVAFFIAEHIHNNVRQLEGAINRLSAHCRLLDL 333 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T E+ L ++ +K+ +E I + VA + + +DL + R + + PRQVAM Sbjct: 334 NITEELVSRTLREMLQQAPREKISVEQILKSVAAVFQVRVSDLRGSTRTKDIALPRQVAM 393 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL+K M S +G FG + H+T+LHA + +EK + +D TL++++ +++R I Sbjct: 394 YLAKEMINESLIMLGASFG-KTHSTILHACKNIEKKVASDETLRRQIGMVRRNI 446 >gi|261414415|ref|YP_003248098.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] gi|261370871|gb|ACX73616.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326676|gb|ADL25877.1| chromosomal replication initiator protein DnaA [Fibrobacter succinogenes subsp. succinogenes S85] Length = 441 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 129/468 (27%), Positives = 233/468 (49%), Gaps = 35/468 (7%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + + L + V+ ++F + K S ++VP + Y + I ++ Sbjct: 5 WERCLNYLHGMLSDTVFKTYFAQTKLVSQTPGHAVIAVPPGLDVK-VYAAYKDLIRLAWK 63 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + VE + + + ++S S + + PL Sbjct: 64 DVSHDEAPVEFEFQPQDVYQPQVSSSDNSFREFIKPSV--------------------PL 103 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 F F F+ G ++A AA ++A + NPLFI+ S GLGKTHLLQ+I N Sbjct: 104 SGSFRFENFVPGDKAQLAFNAALAVARNP----DGTQYNPLFIYGSSGLGKTHLLQSIGN 159 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGK-LI 276 ++ P RV+YLT+E F ++ +++ + D RN +D+LLIDD+Q GK Sbjct: 160 YILEEDPTKRVIYLTSEDFSQQYMKCLQEKRITEMSDFYRNEVDILLIDDIQNWTGKYET 219 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q+EF + N+L + KQ+V +D P +E+++L R+ SR G++V + D E R +IL Sbjct: 220 QNEFFLIFNALHQAGKQIVLTSDAPAAEVKNLSDRLVSRFSWGLTVDIQPPDVETREAIL 279 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADE 395 + E+ L I++EV+ ++A + ++ R L+ A +L + S + IA + Sbjct: 280 HK-----KAEERHLEISDEVIRYLAENIASNVRCLESAIIKLTLQSSLMSHDIDMNIAQK 334 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR-VRTVVRPRQVAMYLSKIMTP 454 +++ + T +++ ++ + V++HY + L+ R + + + RQVAM+L + ++P Sbjct: 335 VVTEIAPT-LRRRVSLDAVLHAVSQHYEVPETKLIEPGRGTKEISKARQVAMFLMRELSP 393 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S IG RFG +DH+TV+HA++ V+K +ETD + + +E LK I + Sbjct: 394 ISLQSIGSRFGGKDHSTVVHAIKSVKKEMETDPSFARLIESLKNTIHD 441 >gi|299141383|ref|ZP_07034520.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella oris C735] gi|298577343|gb|EFI49212.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella oris C735] Length = 468 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 111/471 (23%), Positives = 218/471 (46%), Gaps = 14/471 (2%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNR 88 ++V+ ++ + + ++ V + +WF+ + F + VP+ F+ +++ Sbjct: 1 MKVSPDNRWGKSLALIRQNVTQQQFETWFKPIVFEHYNEATKTILVQVPSLFVYEYLEEN 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 +L + + + V + + + + + + Sbjct: 61 FLNLLKTVLYRSFGEGAQLTYRVVTDKEHKLTQDLEADPTDAEPRKERSGANQSPSPMDV 120 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + + LD F ++EG+SN++ + SIAE S + NP+FI+ G G Sbjct: 121 DKAADIDTQLDPHLNFKNYVEGTSNKLVRSLGLSIAEHPSQP----QFNPMFIYGPSGCG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ AI + P RV+Y++A F +F A + + + ID+L++DD+ Sbjct: 177 KTHLINAIGLRCKQLYPEKRVLYISARLFQSQFVDANLHSSINDFIRFYQTIDMLIVDDI 236 Query: 269 QFLQG-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q Q F H+ N L + K+++ +DRPP +L+ ++ R+ +R G+ L Sbjct: 237 QEWVNATKTQDTFFHIFNHLFRNGKRILLVSDRPPVDLKGMNERLLTRFSCGLIAELEKP 296 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 + E+ ILK ++ L+I +EV+ +A T S R+L+G N L+ + Sbjct: 297 NVELCTDILK-----AKIRRDGLHIPDEVIRFIASTANGSVRDLEGVVNSLLAYSVVYNS 351 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A+ ++ V + + +++I V H++++ + + S R +V RQV M Sbjct: 352 NVDMRLAERVIKRAVKVDDN-PLTVDEILDTVCNHFSVTLSAVNSKSRKHDLVIARQVTM 410 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 YL++ T IGR G+RDH+TV+H+ +VE L+ D + K+EV ++ Sbjct: 411 YLAQKYTKMPASRIGRLVGNRDHSTVIHSCAQVENRLKVDSSFKEEVNSIE 461 >gi|195973856|gb|ACG63493.1| chromosomal replication initiator protein DnaA [Francisella noatunensis] Length = 434 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 140/445 (31%), Positives = 223/445 (50%), Gaps = 47/445 (10%) Query: 69 HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR---------------- 112 N+ + + K IK++Y + I+ +E H+ +E + Sbjct: 1 SNLFTIYCNNEYFKKHIKSKYGDLISSTIEEFHNGDLLIEYSSKKFSGEKASGVASVGPQ 60 Query: 113 --SVALPSVEKTASSPSITKLSPINTNISKSP----------------IILGKQTISPVF 154 +VE S I+ N K+ +I K F Sbjct: 61 ANFFNQKNVEIKDDSEEISLNQEPKKNQKKASSKKTASQELFGFDEAMLITDKDDQEYSF 120 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G PL ++VF +F+ G +N++A AA ++ + NPLFI+ GLGKTHL+Q Sbjct: 121 GLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIYGGSGLGKTHLMQ 175 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + PN R++Y +E F+ + ++IR + R+ D+L IDD+QF+ GK Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGK 235 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 295 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL + + D + E +A V T+ REL+GA N+++ F T E+ Sbjct: 296 AIL-----LKKAYDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEV 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ + Sbjct: 351 AQACLRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLAREL 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVR 477 T S PEIG FG RDHTTV+HAV+ Sbjct: 410 TSHSLPEIGNAFGGRDHTTVMHAVK 434 >gi|195973842|gb|ACG63486.1| chromosomal replication initiator protein DnaA [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|195973844|gb|ACG63487.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] gi|195973846|gb|ACG63488.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] gi|195973848|gb|ACG63489.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] gi|195973850|gb|ACG63490.1| chromosomal replication initiator protein DnaA [Francisella philomiragia] Length = 434 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 143/445 (32%), Positives = 226/445 (50%), Gaps = 47/445 (10%) Query: 69 HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVR-SVALPSVEKTASSPS 127 + + + + K IK++Y E I+ QE H +E + S E T+ P Sbjct: 1 NYLFTIYCNNEYFKKHIKSKYGEIISSTIQEFHDGDLLIEYSNKKFSGEKSPEVTSVGPQ 60 Query: 128 IT---------KLSPINTNISKSP------------------------IILGKQTISPVF 154 K T++++ P +I K F Sbjct: 61 ANFFNQKNVEIKDDSEETSLNQEPKKSQKKLSSKNSASQELFGFDEAMLITDKDDQEYSF 120 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G PL ++VF +F+ G +N++A AA ++ + NPLFI+ GLGKTHL+Q Sbjct: 121 GLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIYGGSGLGKTHLMQ 175 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + PN R++Y +E F+ + ++IR + R+ D+LLIDD+QF+ GK Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 235 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 295 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL + + D + E +A V T+ REL+GA N+++ F T E+ Sbjct: 296 AIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEV 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ + Sbjct: 351 AQACLRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLAREL 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVR 477 T S PEIG FG RDHTTV+HAV+ Sbjct: 410 TSHSLPEIGNAFGGRDHTTVMHAVK 434 >gi|303256370|ref|ZP_07342384.1| DNA replication initiator protein [Burkholderiales bacterium 1_1_47] gi|302859861|gb|EFL82938.1| DNA replication initiator protein [Burkholderiales bacterium 1_1_47] Length = 457 Score = 385 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 236/473 (49%), Gaps = 29/473 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKF-HSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ V + LKN + +V+ WF +++F +I+++SVP+ +IK +Y + I + Sbjct: 3 EVWKSVLAFLKNTIPEEVFVPWFGKVEFTEDSEPDIINISVPSVPHSKFIKAQYEKDIEE 62 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E R ++I V+ I++ P N K Sbjct: 63 KASEICGREIKLKITVKD--------PNKGAMISEPLPGPANTLPEEEKAPKSIDEIATK 114 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L S F TF+ G++NRVA ++A +AE R NPLFI+ VGLGKTHL+ A Sbjct: 115 CGLHSGLTFDTFVIGNANRVARSSAMLVAEFPGE-----RCNPLFIYGGVGLGKTHLMHA 169 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFAS-----AIRDNCALNLKDSLRNIDLLLIDDMQF 270 + ++ PN ++ ++A F+ S D + RN+D LLIDD+QF Sbjct: 170 VGRKILEDNPNTNLLCISANRFINEVVSLSAGGRYSDEKIQKFDNKYRNLDALLIDDVQF 229 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L + Q ++ +LL KQ++ D +L D R+ SR G+SV + ++ Sbjct: 230 LCKRGGTQQRLFNIFEALLPKNKQIILTCDTYARQLSDFDERLISRFGAGLSVSIEPAEF 289 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPIL 388 E+R +IL + + + + + EV +A + T+ REL+GA N ++ R F + Sbjct: 290 ELRAAIL-----LQKAKQQGVKLPLEVAYLIATRLNTNIRELEGALNSVIMRAEVFKKPI 344 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L + TG ++ IE+IQ+ A+H++I D+ S RRV V RQ+AMYL Sbjct: 345 TEELAKEALQGITGTG---RISIENIQQSTAEHFSIKIADMHSKRRVANVAYARQIAMYL 401 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T +S EIG FG RDH TVL+AV+K+ K + L + L+++ + Sbjct: 402 AKELTQKSLIEIGYAFGGRDHATVLYAVKKITKERAQNQELNHTLHLIEQDLK 454 >gi|257455164|ref|ZP_05620402.1| chromosomal replication initiator protein DnaA [Enhydrobacter aerosaccus SK60] gi|257447497|gb|EEV22502.1| chromosomal replication initiator protein DnaA [Enhydrobacter aerosaccus SK60] Length = 446 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 133/470 (28%), Positives = 240/470 (51%), Gaps = 29/470 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++++ LK QV +++ W + L S+ +N + ++VP + ++++ +L I Sbjct: 2 ADALWLKCVDELKYQVPDNIFTMWIRPLSA-SMHNNTMVVNVPNQYFASYVEKNHLSQIQ 60 Query: 95 KLFQEEHSR-IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + Q+ V+I + + + K++ + T +S Sbjct: 61 TILQQLEPTLPIQVQIQIDKGNAITDAVSKQEFGEQKVTLVKTEQQRSFQY--------- 111 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 +D F F F+ SN++A + + A + NPLFI+ + GLGKTHL+ Sbjct: 112 ----IDPHFTFDQFVTAKSNQIAYSICRETANNLGQS----KNNPLFIYGATGLGKTHLM 163 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 QAIA+ +K+ Y T++ F+ + ++R KD ++ DLL+IDD+ + G Sbjct: 164 QAIAHEILKQ--GKSFYYFTSDKFVNQLVHSLRTQKIDEFKDKIKKADLLIIDDIHVIAG 221 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +F LLN + KQV+ A+D+ PS L D R++SRL GV+V L + E R Sbjct: 222 KQKSSEQFLLLLNDFMSKNKQVILASDKHPSALTDFDERLKSRLAWGVAVALEPPELETR 281 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 IL+ + + + + +E + +A+ + + REL+GA N+++ + E Sbjct: 282 IQILQKKSKAQE-----VILPKECAIFIAQHIIANVRELEGALNKVLAISRLLNQPIHLE 336 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 + L L+ + + +++I+++VA+ Y+IS DL+ +R+R + RPRQVAM L++ Sbjct: 337 LVQMALKDLI-AMRVQAVSMDNIRKVVAEFYDISVKDLMGKKRLRHIARPRQVAMSLARE 395 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T SF EIG+ FG RDHTTV+HA KV+++ +D+ K+ LK ++ Sbjct: 396 LTNNSFTEIGQSFGGRDHTTVMHACEKVQELCVSDLMFDKDYRSLKLMLQ 445 >gi|331001504|ref|ZP_08325122.1| replication initiator protein DnaA [Parasutterella excrementihominis YIT 11859] gi|329568233|gb|EGG50050.1| replication initiator protein DnaA [Parasutterella excrementihominis YIT 11859] Length = 457 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 145/473 (30%), Positives = 236/473 (49%), Gaps = 29/473 (6%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKF-HSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ V + LKN + +V+ WF +++F +I+++SVP+ +IK +Y + I + Sbjct: 3 EVWKSVLAFLKNTIPEEVFVPWFGKVEFTEDSEPDIINISVPSVPHSKFIKAQYEKDIEE 62 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 E R ++I V+ I++ P N K Sbjct: 63 KASEICGREIKLKITVKD--------PNKGAMISEPFPGPANTLPEEEKAPKSIDEIATK 114 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L S F TF+ G++NRVA ++A +AE R NPLFI+ VGLGKTHL+ A Sbjct: 115 CGLHSGLTFDTFVIGNANRVARSSAMLVAEFPGE-----RCNPLFIYGGVGLGKTHLMHA 169 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFAS-----AIRDNCALNLKDSLRNIDLLLIDDMQF 270 + ++ PN ++ ++A F+ S D + RN+D LLIDD+QF Sbjct: 170 VGRKILEDNPNTNLLCISANRFINEVVSLSAGGRYSDEKIQKFDNKYRNLDALLIDDVQF 229 Query: 271 LQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 L + Q ++ +LL KQ++ D +L D R+ SR G+SV + ++ Sbjct: 230 LCKRGGTQQRLFNIFEALLPKNKQIILTCDTYARQLSDFDERLISRFGAGLSVSIEPAEF 289 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPIL 388 E+R +IL + + + + + EV +A + T+ REL+GA N ++ R F + Sbjct: 290 ELRAAIL-----LQKAKQQGVKLPLEVAYLIATRLNTNIRELEGALNSVIMRAEVFKKPI 344 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T E+A E L + TG ++ IE+IQ+ A+H++I D+ S RRV V RQ+AMYL Sbjct: 345 TEELAKEALQGITGTG---RISIENIQQSTAEHFSIKIADMHSKRRVANVAYARQIAMYL 401 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T +S EIG FG RDH TVL+AV+K+ K + L + L+++ + Sbjct: 402 AKELTQKSLIEIGYAFGGRDHATVLYAVKKITKERAQNQELNHTLHLIEQDLK 454 >gi|223933958|ref|ZP_03625917.1| chromosomal replication initiator protein DnaA [Streptococcus suis 89/1591] gi|302023110|ref|ZP_07248321.1| chromosomal replication initiation protein [Streptococcus suis 05HAS68] gi|223897377|gb|EEF63779.1| chromosomal replication initiator protein DnaA [Streptococcus suis 89/1591] Length = 457 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 240/473 (50%), Gaps = 22/473 (4%) Query: 33 VNCESI-FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 +N E + + K P +Y + K + + ++ + F K + + + E Sbjct: 1 MNQEQLFWQRFIELAKVNFKPSIYDFYVADAKLLGINQQVANIFLNRPFKKDFWEKNFEE 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + E + ++ E+ + + T+ S ++ + P ++T Sbjct: 61 LMIAASFEIYGEPLAIQYQ-----FTEDEQEIRNTTNTRSSIVHQVQTLEPA-TPQETFK 114 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 PV S + S++ F+ F++G +N A AA ++++ Y NPLFI GLGKTH Sbjct: 115 PVH-SGIKSQYTFANFVQGDNNHWAKAAALAVSDNLGELY-----NPLFIFGGPGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 +L AI N + P R+ Y+++E F+ F +R N + K + RN+DLLLIDD+Q L Sbjct: 169 ILNAIGNKVLADNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSL 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 + K Q EF H N+L + KQ+V +DR P L++L+ R+ +R + G++ + D+E Sbjct: 229 RNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPIL 388 R +IL+N+ E+ N E L ++A ++ R+L+GA L+ + Sbjct: 289 TRIAILRNKC-----ENLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLIATMRQLSEI 343 Query: 389 TAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E+A E + T + + IE IQ V Y +S +L ++RV+ +V RQVAM+ Sbjct: 344 SVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVGNFYGVSLKELKGSKRVQHIVHARQVAMF 403 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ MT S P+IG+ FG+RDHTTV+HA K++ +L D L+ E+ +K + Sbjct: 404 LAREMTDNSLPKIGKEFGNRDHTTVMHAYNKIKTLLLDDENLEIEITSIKNKL 456 >gi|297570614|ref|YP_003696388.1| chromosomal replication initiator protein DnaA [Arcanobacterium haemolyticum DSM 20595] gi|296930961|gb|ADH91769.1| chromosomal replication initiator protein DnaA [Arcanobacterium haemolyticum DSM 20595] Length = 544 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 139/547 (25%), Positives = 247/547 (45%), Gaps = 76/547 (13%) Query: 9 CIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL 68 +++ + D +E SR + ++ ++ + K +++ Sbjct: 6 AFNAQGENMSDGSFAQDAWAAAIE----------LSRAEGRLSDSQ-TAFVRLAKPLAIV 54 Query: 69 HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILV----------------- 111 + + V T F + + ++ +T R ++I V Sbjct: 55 DDRFMIVVATEFTRNLLNTSVVQALTDKLSAIIGRKLTLDISVDSSLSEVAVNPPPAAKI 114 Query: 112 -----------------------RSVALPSVE--KTASSPSITKLSP---------INTN 137 RSV+ P T S+P+ P + Sbjct: 115 PAPVATPSTPITTIPQPTPVRPLRSVSQPENVDMPTFSTPATPSSEPTSIFPKPDYVTEP 174 Query: 138 ISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + +P ++ + L+ R+ F TF+ G SNR A A +++E Y N Sbjct: 175 TAPTPRRNDHRSQGTRESARLNPRYTFETFVIGESNRFAHATALAVSEQPGSTY-----N 229 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLF+++ G+GKTHLL AI N+ + PN +V+Y++AE F F +A+ + N KD Sbjct: 230 PLFLYSESGMGKTHLLHAIGNSVQEMFPNRKVLYVSAEEFTNAFINALANGQMHNFKDQF 289 Query: 258 RNIDLLLIDDMQFLQGK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R +D+LLIDD+QFL G+ EF H N+L+++ KQ+V +D P+ L + R+ S Sbjct: 290 RTVDVLLIDDIQFLSGRDRSRTLEEFFHTFNALINANKQIVITSDVAPNLLVDFEDRMIS 349 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++ + L + E R +IL + L++ +V+ +A +TT+ RE++GA Sbjct: 350 RFNSGITAAIDLPNLETRIAILNR-----KAVAEGLDVPRDVVEFIASKMTTNVREMEGA 404 Query: 375 FNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 ++ ++ E+A+ L +++ + ++ I V+ ++N+ DL S Sbjct: 405 LRRVRAFADLTKQSISLELAESQLKDMISDPTSIQVTAGMIVAQVSSYFNVPLADLKSPT 464 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R R++ +PR VAMYL + +T S P+I F RDHTTV++AVRKVE ++ T+ +V Sbjct: 465 RTRSLTQPRHVAMYLCRELTDLSLPKIAEEFNRRDHTTVMNAVRKVEALMTEKQTIFTQV 524 Query: 494 ELLKRLI 500 L +I Sbjct: 525 SELTTII 531 >gi|195973854|gb|ACG63492.1| chromosomal replication initiator protein DnaA [Francisella noatunensis] Length = 434 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 137/445 (30%), Positives = 221/445 (49%), Gaps = 47/445 (10%) Query: 69 HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTAS---- 124 N+ + + K IK++Y + I+ +E H+ +E + + AS Sbjct: 1 SNLFTIYCNNEYFKKHIKSKYGDLISSTIEEFHNGDLLIEYSSKKFSGEKASGVASVGPQ 60 Query: 125 ----------------------SPSITKLSPINTNISKSPI--------ILGKQTISPVF 154 P + P + + + I K F Sbjct: 61 ANFFNQKNVEIKDDSEEISLNQEPKKNQKKPSSKKTASQELFGFDEAMLITDKDDQEYSF 120 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G PL ++VF +F+ G +N++A AA ++ + NPLFI+ GLGKTHL+Q Sbjct: 121 GLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIYGGSGLGKTHLMQ 175 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + PN R++Y +E F+ + ++IR + R+ D+L IDD+QF+ GK Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGK 235 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRI 295 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL + + D + E +A V T+ REL+GA N+++ F T E+ Sbjct: 296 AIL-----LKKAYDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEV 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A ++ KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ + Sbjct: 351 AQACSRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLAREL 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVR 477 T S PEIG FG RDHTTV+HAV+ Sbjct: 410 TSHSLPEIGNAFGGRDHTTVMHAVK 434 >gi|78776202|ref|YP_392517.1| chromosomal replication initiation protein [Sulfurimonas denitrificans DSM 1251] gi|123768675|sp|Q30UP9|DNAA_SULDN RecName: Full=Chromosomal replication initiator protein DnaA gi|78496742|gb|ABB43282.1| chromosomal replication initiator protein, DnaA [Sulfurimonas denitrificans DSM 1251] Length = 435 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 120/469 (25%), Positives = 228/469 (48%), Gaps = 42/469 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFH--SVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +I + LK ++ Y + + L + + VP + + +WIKNRY I Sbjct: 2 NIGEKILLLLKEEIPEIEYNRYIKHLTYDTKKSTADNAIFYVPNSLVLSWIKNRYSSKIK 61 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 LF+ ++S V IL+++ ++++ Sbjct: 62 HLFEIQNSIKVDVSILLKNQV-------------------------ESKKAEQKSVQKQQ 96 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+ F F+ G SN+ A A +S++E Y NPLFIH VGLGKTHL+Q Sbjct: 97 HSLLNPSHTFENFMVGGSNQFAYAAVKSVSEKAGVLY-----NPLFIHGGVGLGKTHLMQ 151 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 A N + + V+Y T E F+ F +R+ ++ R D+LLIDD+QFL K Sbjct: 152 AAGN--VFQNQGKVVIYTTVEQFLNDFIRHVRNKTMERFQEKYRKCDVLLIDDIQFLSNK 209 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ EF H +L KQ++ AD+ P ++ L+ R++SR + G+ + + E + Sbjct: 210 EGIQEEFFHTFEALKGVGKQIILTADKHPKKIAGLEKRLQSRFEHGLVADIQPPELETKI 269 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +I++N+ I++ + + ++++ ++A + ++ RE++G ++L + + + Sbjct: 270 AIIENKCKINK-----VILTKDIIHYIATVIESNVREIEGILSKLHAYSQLMHVDIDLQF 324 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 +L + + ++ I + VAK NI +++ S R + +V R++A+YL + + Sbjct: 325 TKNVLKDQLQENRA-NLTLDIITQNVAKDLNIKPSEIRSKGRSKNLVYARRIAIYLCREL 383 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T + P++ + FG +DHT + H ++K+ ++++ D K ++E L I+ Sbjct: 384 TQNTMPQLAQYFGMQDHTAISHTLKKIGELMQNDEDFKVKIEELTNKIT 432 >gi|329847538|ref|ZP_08262566.1| chromosomal replication initiator protein DnaA [Asticcacaulis biprosthecum C19] gi|328842601|gb|EGF92170.1| chromosomal replication initiator protein DnaA [Asticcacaulis biprosthecum C19] Length = 433 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 155/434 (35%), Positives = 234/434 (53%), Gaps = 13/434 (2%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSIT 129 L PT + + WI + +L+Q+ + ++IL R + ++ + +T Sbjct: 7 GDPVLVTPTAYARDWISKNAIRRAQELWQQHDPDARILDILCR---VDYDDQVRTGGIVT 63 Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 L P + P++ + S L R F TF+ G N A T ++ +A Sbjct: 64 ALVPSTPVAASEPVVEA--VVPATRISGLQDRLTFDTFVPGRGNEFAYTMSRQVA----- 116 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNC 249 + NP+F H G GKTHLL AI + ++P+ R+VYLTAE F F A+ D Sbjct: 117 SWADGHFNPVFFHGPYGYGKTHLLNAIGWEAQAKRPDARIVYLTAEKFTSTFVKALMDKS 176 Query: 250 ALNLKDSLRNIDLLLIDDMQFLQGKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESL 308 KD +R DLLL+DD+ F+ GK Q E H L SL+++ ++VV ADRPP++L + Sbjct: 177 TSAFKDEVRGADLLLVDDVHFIGGKTSSQEELFHTLTSLIENNRRVVFTADRPPTQLNEI 236 Query: 309 DPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINE-EVLMHVARTVTTS 367 + R+RS L G+ L + D +R I++ +L + EV+ +A V S Sbjct: 237 EARLRSHLSSGLVCALDVADQSLRMGIVERKLGQLSQRLGVAQCPRAEVMQFLADRVPGS 296 Query: 368 GRELDGAFNQLVFRH-SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 REL+GA N LV + LT E A LL + +++ +++IQ++ A H+ + + Sbjct: 297 IRELEGAVNTLVASAGARLGSLTLEEAMALLQPNLKVAVERRVTVDEIQKLTADHFGLKQ 356 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 DLLS RR R+V RPRQVAM+L K T RS+P+IGRRFG RDHTTVLHAV+KVE++L+ D Sbjct: 357 ADLLSERRTRSVARPRQVAMWLCKQHTTRSYPDIGRRFGGRDHTTVLHAVKKVEELLQAD 416 Query: 487 ITLKKEVELLKRLI 500 + ++VE L R + Sbjct: 417 DQIARDVEALTRKL 430 >gi|260909520|ref|ZP_05916223.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] gi|260636368|gb|EEX54355.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str. F0295] Length = 469 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 129/473 (27%), Positives = 226/473 (47%), Gaps = 19/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNR 88 ++V + + + + V P + +WF+ + F S L VP++F+ +I+ Sbjct: 1 MDVTPDKHWESALALIAQNVSPQQFDTWFKPIVFESFNDETKLLVLRVPSSFVYEYIEEH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKT---ASSPSITKLSPINTNISKSPIIL 145 Y++ ++++ + + + R V +KT + P+ + Sbjct: 61 YIDLLSRVLFSAFGQ--RIRLTYRVVVDSEHKKTQDIEADPAEAHATQAAKTWGAKQKTE 118 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + L+ FS +IEG SN+++ + SIAE + T + NP+FI+ Sbjct: 119 EEPAKEQELDPQLNPHQTFSNYIEGDSNKLSRSVGLSIAEHPN----TNQFNPMFIYGPS 174 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GKTHL+ AI + + P RV+Y++A F +F +A+ N + + ID+L++ Sbjct: 175 GCGKTHLVNAIGVQTKQLYPQKRVLYISAHLFQVQFVNAVLKNATNDFIKFYQTIDMLIV 234 Query: 266 DDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q Q F H+ N L + K+++ A+DRPP EL + R+ +R G+ L Sbjct: 235 DDVQTWASADKTQETFFHIFNHLFRNGKRIILASDRPPVELNDMSDRLITRFSCGIIAEL 294 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS- 383 + ++ IL ++ L I EV +A T S R+L+G N L+ Sbjct: 295 EKPNVQLCVDILN-----AKIRRDGLKIPAEVTQFIAETANGSVRDLEGVINSLMAYSVV 349 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + +A+ ++ V +T + I+DI V+ H+N+S + + S R R +V PRQ Sbjct: 350 YNSDIDMRLAERVIKRAVKIDDT-PLTIDDILEKVSHHFNVSVSAVSSKSRKRDLVVPRQ 408 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 V+MYL++ T IG+ G RDH+TVLH+ +VE L+TD EVE + Sbjct: 409 VSMYLAQRYTKMPASRIGKLVGGRDHSTVLHSCAQVEARLKTDSLFAAEVESI 461 >gi|198417057|gb|ACH87840.1| DnaA [Francisella noatunensis subsp. noatunensis] Length = 433 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 137/444 (30%), Positives = 221/444 (49%), Gaps = 47/444 (10%) Query: 70 NIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTAS----- 124 N+ + + K IK++Y + I+ +E H+ +E + + AS Sbjct: 1 NLFTIYCNNEYFKKHIKSKYGDLISSTIEEFHNGDLLIEYSSKKFSGEKASGVASVGPQA 60 Query: 125 ---------------------SPSITKLSPINTNISKSPI--------ILGKQTISPVFG 155 P + P + + + I K FG Sbjct: 61 NFFNQKNVEIKDDSEEISLNQEPKKNQKKPSSKKTASQELFGFDEAMLITDKDDQEYSFG 120 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 PL ++VF +F+ G +N++A AA ++ + NPLFI+ GLGKTHL+QA Sbjct: 121 LPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIYGGSGLGKTHLMQA 175 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 I N + + PN R++Y +E F+ + ++IR + R+ D+L IDD+QF+ GK Sbjct: 176 IGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILFIDDIQFIAGKE 235 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R + Sbjct: 236 GTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMPDLETRIA 295 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIA 393 IL + + D + E +A V T+ REL+GA N+++ F T E+A Sbjct: 296 IL-----LKKAYDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEVA 350 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++ KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ +T Sbjct: 351 QACSRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLARELT 409 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVR 477 S PEIG FG RDHTTV+HAV+ Sbjct: 410 SHSLPEIGNAFGGRDHTTVMHAVK 433 >gi|195973852|gb|ACG63491.1| chromosomal replication initiator protein DnaA [Francisella noatunensis subsp. orientalis] gi|225624833|gb|ACN96551.1| DnaA [Francisella noatunensis subsp. orientalis] Length = 434 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 139/445 (31%), Positives = 222/445 (49%), Gaps = 47/445 (10%) Query: 69 HNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTAS---- 124 N+ + + K IK++Y I+ +E H+ +E + + AS Sbjct: 1 SNLFTIYCNNEYFKKHIKSKYGYLISSTIEEFHNGDLLIEYSNKKFSGEKASGVASVGPQ 60 Query: 125 ----------------------SPSITKLSPINTNISKSPI--------ILGKQTISPVF 154 P + P + + + I K F Sbjct: 61 ANFFNQKNVEIKDDSEEISLNQEPKKNQKKPSSKKTASQELFGFDEAMLITDKDDQEYSF 120 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G PL ++VF +F+ G +N++A AA ++ + NPLFI+ GLGKTHL+Q Sbjct: 121 GLPLKEKYVFDSFVVGDANKIARAAAMQVSINPGKLH-----NPLFIYGGSGLGKTHLMQ 175 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI N + + PN R++Y +E F+ + ++IR + R+ D+LLIDD+QF+ GK Sbjct: 176 AIGNHAREVNPNARIIYTNSEQFIKDYVNSIRLQDQDEFQRVYRSADILLIDDIQFIAGK 235 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 EF H N+L ++ KQ++ +D+ P+E+E L+ R+ SR G++V + + D E R Sbjct: 236 EGTAQEFFHTFNALYENGKQIILTSDKYPNEIEGLEERLVSRFGYGLTVSVDMLDLETRI 295 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 +IL + + D + E +A V T+ REL+GA N+++ F T E+ Sbjct: 296 AIL-----LKKAHDLGQKLPNETAAFIAENVRTNVRELEGALNRVLTTSKFNHKDPTIEV 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A L ++ KK++I++IQ++VA Y I DL SN+R R + RPRQ+AM L++ + Sbjct: 351 AQACLRDVIKIQ-EKKVKIDNIQKVVADFYRIRVKDLTSNQRSRNIARPRQIAMSLAREL 409 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVR 477 T S PEIG FG RDHTTV+HAV+ Sbjct: 410 TSHSLPEIGNAFGGRDHTTVMHAVK 434 >gi|146319849|ref|YP_001197375.1| chromosomal replication initiation protein [Streptococcus suis 05ZYH33] gi|146322039|ref|YP_001199561.1| chromosomal replication initiation protein [Streptococcus suis 98HAH33] gi|253750924|ref|YP_003024065.1| chromosomal replication initiator protein [Streptococcus suis SC84] gi|253752823|ref|YP_003025963.1| chromosomal replication initiator protein [Streptococcus suis P1/7] gi|145690655|gb|ABP91161.1| ATPase involved in DNA replication initiation [Streptococcus suis 05ZYH33] gi|145692845|gb|ABP93350.1| ATPase involved in DNA replication initiation [Streptococcus suis 98HAH33] gi|251815213|emb|CAZ50777.1| chromosomal replication initiator protein [Streptococcus suis SC84] gi|251819068|emb|CAR44080.1| chromosomal replication initiator protein [Streptococcus suis P1/7] gi|292557465|gb|ADE30466.1| chromosomal replication initiator protein, DnaA [Streptococcus suis GZ1] gi|319757173|gb|ADV69115.1| chromosomal replication initiator protein [Streptococcus suis JS14] Length = 457 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 240/473 (50%), Gaps = 22/473 (4%) Query: 33 VNCESI-FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 +N E + + K P +Y + K + + ++ + F K + + + E Sbjct: 1 MNQEQLFWQRFIELAKVNFKPSIYDFYVADAKLLGINQQVANIFLNRPFKKDFWEKNFEE 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + E + ++ E+ + + T+ S ++ + P ++T Sbjct: 61 LMIAASFESYGEPLTIQYQ-----FTEDEQEIRNTTNTRSSIVHQVQTLEPA-TPQETFK 114 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 PV S + S++ F+ F++G +N A AA ++++ Y NPLFI GLGKTH Sbjct: 115 PVH-SDIKSQYTFANFVQGDNNHWAKAAALAVSDNLGELY-----NPLFIFGGPGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 +L AI N + P R+ Y+++E F+ F +R N + K + RN+DLLLIDD+Q L Sbjct: 169 ILNAIGNKVLADNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSL 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 + K Q EF H N+L + KQ+V +DR P L++L+ R+ +R + G++ + D+E Sbjct: 229 RNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPIL 388 R +IL+N+ E+ N E L ++A ++ R+L+GA L+ + Sbjct: 289 TRIAILRNKC-----ENLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLIATMRQLSEI 343 Query: 389 TAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E+A E + T + + IE IQ V Y +S +L ++RV+ +V RQVAM+ Sbjct: 344 SVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVGNFYGVSLKELKGSKRVQHIVHARQVAMF 403 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ MT S P+IG+ FG+RDHTTV+HA K++ +L D L+ E+ +K + Sbjct: 404 LAREMTDNSLPKIGKEFGNRDHTTVMHAYNKIKTLLLDDENLEIEITSIKNKL 456 >gi|288929563|ref|ZP_06423407.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella sp. oral taxon 317 str. F0108] gi|288329068|gb|EFC67655.1| bacterial DnaA protein helix-turn-helix domain protein [Prevotella sp. oral taxon 317 str. F0108] Length = 469 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 127/473 (26%), Positives = 228/473 (48%), Gaps = 19/473 (4%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIV--HLSVPTNFLKAWIKNR 88 ++V + + + + V P + +WF+ + F S + L VP++F+ +I+ Sbjct: 1 MDVTPDKHWEAALALIAQNVSPQQFDTWFKPIVFESFNNETKLLVLRVPSSFVYEYIEEH 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKT---ASSPSITKLSPINTNISKSPIIL 145 Y++ ++++ + + + R V +KT + P+ + + Sbjct: 61 YIDLLSRVLFSAFGQ--RIRLTYRVVVDSEHKKTQDIEADPAEAHATQAAKTWGAKQKAV 118 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + L+ FS +IEG SN+++ + S+AE + T + NP+FI+ Sbjct: 119 EEPAKEQELDPQLNPHQTFSNYIEGESNKLSRSVGLSVAEHPN----TNQFNPMFIYGPS 174 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 G GKTHL+ AI + + P RV+Y++A F +F +A+ N + + ID+L++ Sbjct: 175 GCGKTHLVNAIGVQTKQLYPQKRVLYISAHLFQVQFVNAVLKNATNDFIKFYQTIDMLIV 234 Query: 266 DDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+Q Q F H+ N L + K+++ A+DRPP EL + R+ +R G+ L Sbjct: 235 DDVQTWASADKTQETFFHIFNHLFRNGKRIILASDRPPVELNEMSDRLITRFSCGIIAEL 294 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS- 383 + ++ IL ++ L I EV +A T S R+L+G N L+ Sbjct: 295 EKPNVQLCVDILN-----AKIRRDGLKIPAEVTQFIAETANGSVRDLEGVINSLMAYSVV 349 Query: 384 FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + +A+ ++ V +T + ++DI V+ H+N+S + + S R R +V PRQ Sbjct: 350 YNSDIDMRLAERVIKRAVKVDDT-PLTVDDILEKVSNHFNVSVSAVSSKSRKRDLVVPRQ 408 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 V+MYL++ T IG+ G RDH+TVLH+ +VE L+TD EVE + Sbjct: 409 VSMYLAQKYTKMPASRIGKLVGGRDHSTVLHSCAQVEARLKTDSLFAAEVESI 461 >gi|319440487|ref|ZP_07989643.1| chromosomal replication initiation protein [Corynebacterium variabile DSM 44702] Length = 564 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 114/351 (32%), Positives = 196/351 (55%), Gaps = 16/351 (4%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ ++ F TF+ G SN+ A +++AE Y NPLFI+ GLGKTHLL Sbjct: 220 ENRLNPKYTFDTFVTGPSNQFPAAACRAVAENPGKAY-----NPLFIYGQPGLGKTHLLH 274 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN--CALNLKDSLRNIDLLLIDDMQFLQ 272 AI + + + +P +RV Y+++E F +AI+ K + RN+DLL++DD+QFLQ Sbjct: 275 AIGHYARELKPEIRVRYVSSEEMTNEFINAIQGGPLALDQFKRNYRNLDLLIVDDIQFLQ 334 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + Q+V ++DRPPS+L +L+ R+R+R +GG++ + D E Sbjct: 335 GKESTQEEFFHTFNALYQANHQIVLSSDRPPSQLTTLEDRLRTRFEGGLTTDVKTPDLET 394 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL + ++ + +VL +A +S REL+GA ++V S +T Sbjct: 395 RMAILAKKSLLNGA-----AVPRDVLEFIASRNESSIRELEGALTRVVAYCSMTGEPITI 449 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A+ ++ ++ + K+ E + ++A H+ +S + L +VR +V RQ M+L++ Sbjct: 450 AAAEVVVKDILP--QDVKITPEMVIEVIADHFTVSIDQLTGPSKVRKIVTARQFGMFLTR 507 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S +IG +G RDHTTV+HA +K+ ++ + + ++ + L + I Sbjct: 508 EYCEMSTTKIGEVYGGRDHTTVMHAEKKMRTAIQENTAIFEQFQELTQKIK 558 >gi|270284630|ref|ZP_05966430.2| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum DSM 20093] gi|270276567|gb|EFA22421.1| putative ATP synthase F1, delta subunit [Bifidobacterium gallicum DSM 20093] Length = 560 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 120/398 (30%), Positives = 201/398 (50%), Gaps = 21/398 (5%) Query: 113 SVALPSVEKTASSPSITKLS-PINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 + P+ + A ++T+ PI T I + I G + L+ F F+ G Sbjct: 172 TPQAPATQPAAHKAAVTQGQLPIPTTIPEQHIQQGTSRPQLDPATHLNKNATFDNFVPGD 231 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 SN+ A T A ++AE Y NPL I+ GLGKTHLL AI N ++ + P+L+V Y Sbjct: 232 SNQFARTVALAVAEGSGRDY-----NPLCIYGGSGLGKTHLLNAIGNYALVKDPSLKVRY 286 Query: 232 LTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 +T E F F +IR R++D+LLIDD+QFL GK +F H N Sbjct: 287 VTTEEFTNEFIESIRPEGSDAKPMSEFNHRYRSVDVLLIDDIQFLSGKSQTMEQFFHTFN 346 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L + K++V A+D P +L + R+ SR + G+ V + + E R +IL+ Sbjct: 347 TLQQNNKRIVIASDVAPKKLRDFEDRLISRFESGLVVDVKPPELETRIAILRMM-----A 401 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTG 404 E K+++ +V+ +A T + R+L+GA ++ + + +T +A+++L Sbjct: 402 ETNKVDVPRDVMDLIAEHCTENIRQLEGALTRVTAQATLNNQPITRILAEQVLKDY---N 458 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 +++ DI VAK++ ++ +DL+ R + V RQ+AMYL++ MT S +IG+ F Sbjct: 459 TNVEVKPTDIIGQVAKYFYLTFDDLVGRSRTKNVALARQIAMYLTREMTSMSLVDIGQVF 518 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G RDHTTV+H ++ + + + V L + + Sbjct: 519 GGRDHTTVMHNCDRITNEMGSKQEIYNHVMELTVRLKQ 556 >gi|260904981|ref|ZP_05913303.1| chromosomal replication initiator protein DnaA [Brevibacterium linens BL2] Length = 544 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 125/396 (31%), Positives = 200/396 (50%), Gaps = 20/396 (5%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG---SPLDSRFVFSTFIEGSSN 173 P T +PS T K Q+ PV + L+ ++ F TF+ G+SN Sbjct: 155 PRYADTGPAPSNGAPVERTTREMKIAEATAAQSTPPVEVPGVAQLNPKYTFDTFVIGASN 214 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A NPLFI+ GLGKTHLL AI + + P +RV Y++ Sbjct: 215 RF-----AHAAAFAVAEAPAKAYNPLFIYGDSGLGKTHLLHAIGYYATQLFPEIRVKYVS 269 Query: 234 AEYFMWRFASAIRDNCALN-----LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 +E F+ F + I + N + R +D+L+IDD+QFLQGK EF H N+L Sbjct: 270 SEEFVNDFINTIGSSKTSNSLRPAFQRRYREVDILMIDDIQFLQGKDATVEEFFHTFNAL 329 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + KQVV +D+PP L+ + R+RSR + G+ + D E RF+IL+ + A Q Sbjct: 330 HNEVKQVVITSDQPPKMLKGFEERLRSRFEWGLLTDVQPPDMETRFAILRRKAAGEQ--- 386 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGET 406 L++ +VL ++A ++++ REL+GA ++ + + +A+ +L + +T Sbjct: 387 --LDVPNDVLEYIASRISSNIRELEGALIRVTAFANLNDQQVDVSLAETVLKDFITQDDT 444 Query: 407 KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGD 466 + DI A +++++ +DL R RT+ RQ+AMYL + +T S P+IG+ FG Sbjct: 445 PAITAADIMGQTAAYFSLTLDDLCGTSRSRTLTTARQIAMYLCRELTELSLPKIGQAFGG 504 Query: 467 RDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 RDHTTV+HA +K+ + + +V L I + Sbjct: 505 RDHTTVMHANKKIRTQMAERRAVYTQVTELTNRIKQ 540 >gi|330831850|ref|YP_004400675.1| chromosomal replication initiator protein [Streptococcus suis ST3] gi|329306073|gb|AEB80489.1| chromosomal replication initiator protein [Streptococcus suis ST3] Length = 457 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 139/473 (29%), Positives = 240/473 (50%), Gaps = 22/473 (4%) Query: 33 VNCESI-FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 +N E + + K P +Y + K + + ++ + F K + + + E Sbjct: 1 MNQEQLFWQRFIELAKVNFKPSIYDFYVADAKLLGINQQVANIFLNRPFKKDFWEKNFEE 60 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + E + ++ E+ + + T+ S ++ + P ++T Sbjct: 61 LMIAASFEIYGEPLAIQYQ-----FTEDEQEIRNTTNTRSSIVHQVQTLEPA-TPQETFK 114 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 PV S + S++ F+ F++G +N A AA ++++ Y NPLFI GLGKTH Sbjct: 115 PVH-SGIKSQYTFANFVQGDNNHWAKAAALAVSDNLGELY-----NPLFIFGGPGLGKTH 168 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 +L AI N + P R+ Y+++E F+ F +R N + K + RN+DLLLIDD+Q L Sbjct: 169 ILNAIGNKFLADNPQARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSL 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 + K Q EF H N+L + KQ+V +DR P L++L+ R+ +R + G++ + D+E Sbjct: 229 RNKATTQEEFFHTFNALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFE 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPIL 388 R +IL+N+ E+ N E L ++A ++ R+L+GA L+ + Sbjct: 289 TRIAILRNKC-----ENLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLIATMRQLSEI 343 Query: 389 TAEIADELLSHLVNTG-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E+A E + T + + IE IQ V Y +S +L ++RV+ +V RQVAM+ Sbjct: 344 SVEVAAEAIRSRKQTNPQNMVIPIEKIQTEVGNFYGVSLKELKGSKRVQHIVHARQVAMF 403 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L++ MT S P+IG+ FG+RDHTTV+HA K++ +L D L+ E+ +K + Sbjct: 404 LAREMTDNSLPKIGKEFGNRDHTTVMHAYNKIKTLLLDDENLEIEITSIKNKL 456 >gi|312137515|ref|YP_004004851.1| chromosome replication initiator protein dnaa [Rhodococcus equi 103S] gi|311886854|emb|CBH46162.1| chromosome replication initiator protein DnaA [Rhodococcus equi 103S] Length = 524 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 132/525 (25%), Positives = 239/525 (45%), Gaps = 69/525 (13%) Query: 35 CESIFTIVSSRLKN------QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 +++ V + L + ++ +W ++ + LSVP+ + I+ Sbjct: 8 LANVWRDVVAELTSDASDSPKLTKAQ-KAWLALVRPLTYAQGFALLSVPSPLAQEAIERD 66 Query: 89 YLETITKLFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLS------------PIN 135 E I + +++G+ + + + + E + + + P Sbjct: 67 LREPILRALNRHLGQKVEGLGVRIAAPSEDRGEDSGDAAPADETDRGAALDFADSSYPDG 126 Query: 136 TNISKS--------------------------------PIILGKQTISPVF----GSPLD 159 + + P K P G+ L+ Sbjct: 127 ASARRRHLTMSESVAVDLAEHEEVDDDREALASVHESWPSYFTKPPTGPSTSATGGNSLN 186 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 +++ F TF+ G+SNR A V NPLFI + GLGKTHLL A + Sbjct: 187 AKYTFDTFVIGASNRF-----AHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHAAGHY 241 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 + + P LRV Y++ E F F +++RD+ + K R D+LL+DD+QF++GK IQ Sbjct: 242 AQRLFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDIQFIEGKEGIQE 301 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 302 EFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSK 361 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELL 397 + +L++ +VL +A + + REL+GA ++ S L ++A+ +L Sbjct: 362 -----KARMDRLDVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQALDLKLAEVVL 416 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 L+ ++ I + A+++N S +DL + R + + RQ+AMYL + +T S Sbjct: 417 RDLMPDSAALEINAATIMAVTAEYFNTSIDDLCGPGKARPLAQARQIAMYLCRELTDLSL 476 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P+IG+ FG RDHTTV++A +K+ K + + +V+ L I + Sbjct: 477 PKIGQTFG-RDHTTVMYADKKIRKEMTERRKVYDQVQELTARIKQ 520 >gi|325677520|ref|ZP_08157184.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707] gi|325551767|gb|EGD21465.1| replication initiation protein DnaA [Rhodococcus equi ATCC 33707] Length = 524 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 132/525 (25%), Positives = 239/525 (45%), Gaps = 69/525 (13%) Query: 35 CESIFTIVSSRLKN------QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNR 88 +++ V + L + ++ +W ++ + LSVP+ + I+ Sbjct: 8 LANVWRDVVAELTSDASDSPKLTKAQ-KAWLALVRPLTYAQGFALLSVPSPLAQEAIERD 66 Query: 89 YLETITKLFQEEHS-RIQGVEILVRSVALPSVEKTASSPSITKLS------------PIN 135 E I + +++G+ + + + + E + + + P Sbjct: 67 LREPILRALNRHLGQKVEGLGVRIAAPSEDRGEDSGDAAPADETDRGAALDFADSSYPDG 126 Query: 136 TNISKS--------------------------------PIILGKQTISPVF----GSPLD 159 + + P K P G+ L+ Sbjct: 127 ASARRRHLTMSESVTVDLAEHEEVDDDREALASVHESWPSYFTKPPTGPSTSATGGNSLN 186 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 +++ F TF+ G+SNR A V NPLFI + GLGKTHLL A + Sbjct: 187 AKYTFDTFVIGASNRF-----AHAAAVAIAEAPARAYNPLFIWGASGLGKTHLLHAAGHY 241 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 + + P LRV Y++ E F F +++RD+ + K R D+LL+DD+QF++GK IQ Sbjct: 242 AQRLFPGLRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDIQFIEGKEGIQE 301 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL Sbjct: 302 EFFHTFNTLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILSK 361 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELL 397 + +L++ +VL +A + + REL+GA ++ S L ++A+ +L Sbjct: 362 -----KARMDRLDVPHDVLELIASRIERNIRELEGALIRVTAFASLNRQALDLKLAEVVL 416 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 L+ ++ I + A+++N S +DL + R + + RQ+AMYL + +T S Sbjct: 417 RDLMPDSAALEINAATIMAVTAEYFNTSIDDLCGPGKARPLAQARQIAMYLCRELTDLSL 476 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P+IG+ FG RDHTTV++A +K+ K + + +V+ L I + Sbjct: 477 PKIGQTFG-RDHTTVMYADKKIRKEMTERRKVYDQVQELTARIKQ 520 >gi|108761581|ref|YP_628287.1| chromosomal replication initiator protein DnaA [Myxococcus xanthus DK 1622] gi|108465461|gb|ABF90646.1| chromosomal replication initiator protein DnaA [Myxococcus xanthus DK 1622] Length = 450 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 137/467 (29%), Positives = 234/467 (50%), Gaps = 40/467 (8%) Query: 38 IFTIVSSRLKNQVGPDVYA-SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 ++ + ++ + YA W +R++ V + + VP F + W+ + Y + Sbjct: 17 LWARMLDAIRQE--KFDYALRWLERMRPLEVRDGALVMGVPDRFFRDWVDDHYRPMLDVQ 74 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 + + V VE P + + ++ Sbjct: 75 LARMGEGLTSIAYEV-------VEGLEPDPHFPPTPSVKASATRP--------------G 113 Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L++RF F TF+ SN++ AAQ++A+ H Y NPL+I+ GLGKTHLLQA+ Sbjct: 114 RLNARFTFDTFVVADSNQLPAAAAQAVADKPGHHY-----NPLYIYGGTGLGKTHLLQAV 168 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK- 274 N +R P+ RVV+L++E F + ++R++ + + R D+LL+DD+QFL + Sbjct: 169 GNLIWERDPSQRVVFLSSEQFTNEYVESVREHRMGDFRRKFREECDVLLLDDIQFLGKRE 228 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF + N+L + K +V +D P+E+ L+ R+RSR G+ + YE R + Sbjct: 229 ETQKEFFYTFNTLYEMNKAIVLTSDTVPAEIPGLEDRLRSRFAMGLMTDIREPTYETRVA 288 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIA 393 IL+ + L++ + V +A+ + + REL+GA +L HS +T + A Sbjct: 289 ILQK-----KAVAEGLDLPDSVAHFIAKHIQKNVRELEGALVKLSAVHSLTRQPVTEDFA 343 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++L ++ + +E IQR VA+ Y ++ L +RR + + RQVAMYLS+ +T Sbjct: 344 SQVLRDILPAHSA--VDVEAIQREVARFYKVTVESLKEDRRHKALAHARQVAMYLSRKLT 401 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SFPEI RF +DH+TV+ AVRKVE + TD T+++E+ L+ + Sbjct: 402 KSSFPEIAARFS-KDHSTVISAVRKVEGLRVTDATVQRELAELELKL 447 >gi|118474813|ref|YP_891211.1| chromosomal replication initiation protein [Campylobacter fetus subsp. fetus 82-40] gi|166201872|sp|A0RLX8|DNAA_CAMFF RecName: Full=Chromosomal replication initiator protein DnaA gi|118414039|gb|ABK82459.1| chromosomal replication initiator protein DnaA [Campylobacter fetus subsp. fetus 82-40] Length = 436 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 121/468 (25%), Positives = 224/468 (47%), Gaps = 44/468 (9%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYLETITKLF 97 V L ++ + ++ ++KF+ N ++ + P + +I+ RY I +F Sbjct: 4 DEVIELLGQEISKNEMENYISQIKFNEKSSNSENIIFTAPNELVTKFIQTRYANKIANIF 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I + + K I S S Sbjct: 64 EVKTGIKPVISITTQKNRVSIKAKDIDVKQIRTQS-----------------------SL 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F +F+ G SN+ A ++Q A+ Y NPLFI+ S GLGKTHLLQ+I Sbjct: 101 LNPSYTFESFVVGDSNQFAYISSQQAAQNPGKVY-----NPLFIYGSTGLGKTHLLQSIG 155 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL-QGKLI 276 N ++ V+ +T+E FM F + + K+ RN D+LLIDD+QF + + Sbjct: 156 NYCLEH--GKTVICVTSEQFMSDFIRNVENRTMNKFKEKYRNCDILLIDDIQFFHKSEKT 213 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N + Q+V +D+PP L+ + R++SR + G+ + + + + I+ Sbjct: 214 QEEFFHTFNEIHAKKGQIVMTSDKPPKMLKGFEERLKSRFEWGLMADITPPELDTKIRII 273 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADEL 396 K ++ E +N++ +++ ++A + + RE++ A + ++FA I+ EI E Sbjct: 274 K-----AKCEFDGINLSSDIIEYIATNMGDNIREIESAIINI---NAFANIMRQEITLEF 325 Query: 397 LSHLVNTGETKK---MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 +++ +K + +E+I V+ NI +D+ S R + +V R++ +YL+K +T Sbjct: 326 AKNVIKDQIKEKKDNISLENIISCVSHEMNIKPSDIKSKSRTKGIVEARRICIYLAKTLT 385 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 P S P++ FG +DH+ V H ++K+ +++ D K VE LK I+ Sbjct: 386 PNSMPQLATHFGLKDHSAVSHNIKKINEIINNDGYFKARVEELKNKIT 433 >gi|260774541|ref|ZP_05883454.1| chromosomal replication initiator protein dnaA [Vibrio metschnikovii CIP 69.14] gi|260610447|gb|EEX35653.1| chromosomal replication initiator protein dnaA [Vibrio metschnikovii CIP 69.14] Length = 311 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 124/321 (38%), Positives = 194/321 (60%), Gaps = 13/321 (4%) Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFA 242 +A+ Y NPLF++ GLGKTHLL A+ NA + +PN +VVY+ +E F+ Sbjct: 1 MADNPGAAY-----NPLFLYGGTGLGKTHLLHAVGNAIVDNKPNAKVVYMHSERFVQDMV 55 Query: 243 SAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 A+++N K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR Sbjct: 56 KALQNNAIEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRY 115 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 P E+ ++ R++SR G++V + + E R +IL +++ ED ++++ +EV +A Sbjct: 116 PKEINGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MTKAEDHQIHLPDEVAFFIA 170 Query: 362 RTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 + + ++ REL+GA N+++ +F +T + E L L+ K + I++IQ+ VA+ Sbjct: 171 KRLRSNVRELEGALNRVIANANFTGRPITIDFVREALRDLLALQ-EKLVTIDNIQKTVAE 229 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 +Y I DLLS RR R+V RPRQ+AM LSK +T S PEIG FG RDHTTVLHA RK+E Sbjct: 230 YYKIKVADLLSKRRSRSVARPRQLAMALSKELTNHSLPEIGDAFGGRDHTTVLHACRKIE 289 Query: 481 KMLETDITLKKEVELLKRLIS 501 ++ E +K++ L R +S Sbjct: 290 QLREESHDIKEDYSNLIRTLS 310 >gi|313112577|ref|ZP_07798238.1| replication initiator protein DnaA [Faecalibacterium cf. prausnitzii KLE1255] gi|310625099|gb|EFQ08393.1| replication initiator protein DnaA [Faecalibacterium cf. prausnitzii KLE1255] Length = 440 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 132/466 (28%), Positives = 230/466 (49%), Gaps = 37/466 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI-VHLSVPTNFLKAWIKNRYLETIT 94 + + + K Q+ Y + L+ S + + LSV +F+ + +RYL + Sbjct: 5 KDVLEAAQAYCKTQMAEPTYNLYIDGLEPISFEDSSHITLSVRNDFICKIVTDRYLGLLK 64 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + F+ + ++V + ++L +Q + Sbjct: 65 EAFKTVLGFDVDITLVV------------------------PSTPPHEVVLAQQYEANPA 100 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + F F FI+G SN+ A AAQ++A S Y NPLFI+ GLGKTHLL Sbjct: 101 SPQGNYEFTFENFIKGPSNQFAFAAAQAVAANPSGAY-----NPLFIYGGSGLGKTHLLT 155 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + P+ ++Y+T E F +AIR + + R DLLL+DD+QF+ GK Sbjct: 156 AIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRVADLLLVDDIQFIAGK 215 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H NSL D+ KQ+V A+DRP E++SL+ R+R+R + G++ + D+E R Sbjct: 216 ESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEWGLTADVQPPDFETRV 275 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +I+K + E L++ E+V +A + + R+L+GA +L + I + Sbjct: 276 AIVKR-----KAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYMLEGIQPVISV 330 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + ++N + + IE I V++ +N+S D+ +R V R+VA+Y+ + + Sbjct: 331 AQNAIKDILNETQPVPVTIEKIIGEVSRTFNVSPADIRGTKRNANVASARRVAIYILREV 390 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 T S EIGR F RDH+T++++++ +E+ ++ D L++ V + + Sbjct: 391 TGMSMEEIGREFSGRDHSTIVYSLKTMERDMKNDQHLRETVSDIIK 436 >gi|42521651|ref|NP_967031.1| chromosomal replication initiator protein dnaA [Bdellovibrio bacteriovorus HD100] gi|61212608|sp|Q6MRS1|DNAA_BDEBA RecName: Full=Chromosomal replication initiator protein DnaA gi|39574181|emb|CAE77685.1| chromosomal replication initiator protein dnaA [Bdellovibrio bacteriovorus HD100] Length = 471 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 139/478 (29%), Positives = 249/478 (52%), Gaps = 21/478 (4%) Query: 31 LEVNCESIFTIVSSRLKN-QVGPDVYASWFQRLKFHSVLHN----IVHLSVPTNFLKAWI 85 +E+N S +T++ +++K+ + +W +++ S + + L VP + ++ Sbjct: 1 MELN-SSFWTLIKTKMKSRNDNNKLLDTWLDPIEYVSTTGSADRPRLVLGVPNALHQYFV 59 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL 145 + I + + + VE + + S +T+++P + Sbjct: 60 IENLQDKIYTEISDTYGKPFEVEFSITGNKINSHIETSTTPDEVLSGSEILQAQLARAQN 119 Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + T L+S FSTF+ G ++ A A ++A NPL+I+ V Sbjct: 120 IQPTQPRSSSDTLNSELTFSTFVVGKNSEFAHAACYNVARNPG----ADDYNPLYIYGPV 175 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLL 264 G+GKTHLL A N ++ +LR+ Y++AE FM SAIR + + R N D+LL Sbjct: 176 GMGKTHLLHAAGNHIREQYQHLRITYISAERFMNECISAIRRHEMDKFRQKYRENSDILL 235 Query: 265 IDDMQFLQ-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QF+ G+ +Q EF H +NS +DS KQV+ A+DR P ++ L+ R R+RL+ G+ Sbjct: 236 VDDVQFIARGEAVQEEFFHTVNSFIDSRKQVILASDRMPKDIHGLEDRSRTRLERGLIAD 295 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + + D E R +IL+ + E + + E+V+ ++AR S REL+G ++ Sbjct: 296 ITMPDLETRIAILR-----YKAEKYNVRLPEDVVNYIARISKRSIRELEGNLKKVKM--- 347 Query: 384 FAPILTAEIADELLSHLVNTGETKK-MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 F+ + I EL+ ++ ET+ + +E+I ++VA H+ + DL S+ R + +V PR Sbjct: 348 FSELQGLPIDHELVKRILAHHETQSTISVEEIMKLVADHFKVRVLDLKSSTRAKPIVVPR 407 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 Q+AMYL K +S +IG+ FG +DHTTV++A+ +V+ + D + K++E L++ I Sbjct: 408 QIAMYLIKKFLDKSLVDIGKSFGGKDHTTVMNALERVKNLQAADQDIAKDIEDLEQRI 465 >gi|187734518|ref|YP_001876630.1| chromosomal replication initiator protein DnaA [Akkermansia muciniphila ATCC BAA-835] gi|187424570|gb|ACD03849.1| chromosomal replication initiator protein DnaA [Akkermansia muciniphila ATCC BAA-835] Length = 468 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 128/475 (26%), Positives = 234/475 (49%), Gaps = 20/475 (4%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ ++ L+ + P+VY WF + + L W++N Y + Sbjct: 7 LSATWSKITGALQTIMSPEVYGLWFPKFSLLEDSGKALTLVCDDPMAALWVENSYTPELK 66 Query: 95 KLFQEEHSRIQGVEILV--RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + ++ + ++P+ E S +P + +P+ K+ + Sbjct: 67 QAAMLALGTERQIKFVCTDEVASMPAAEGQPQKASSRAKTPQAADSPAAPV---KKQRTS 123 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ + F +F+ +R A A S+A+ + NPLF++ G+GKTHL Sbjct: 124 AARACLNDLYTFDSFVVYEDSRFAYQAGLSVAQSE-----RALFNPLFLYGKSGVGKTHL 178 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL---KDSLRNIDLLLIDDMQ 269 LQAI + + + + VVY+T E F F A R + + R D+LL+DD+Q Sbjct: 179 LQAIGHEVLHQDSSTNVVYVTGEQFANEFIDASRTQNGQSFTKLRRKYRKADVLLVDDVQ 238 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK EF H + L + K +V AD ++ +LDPR+ +RL+ G++V L L D Sbjct: 239 FISGKEKTVEEFLHTFDELFHAHKTIVICADAAACDISNLDPRLAARLESGLTVELNLPD 298 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 R IL+ S+++ +N+++E+L +A + S R L+GA ++ S + + Sbjct: 299 DNARLEILR-----SKRDRAGMNVSDEILEFLASRIQKSVRRLEGALLRVATFTSLSGDM 353 Query: 389 -TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 ++LL ++ ++ + ++ IQ+ VA Y + +DL RR ++ PRQ+AMY Sbjct: 354 PDIAKIEQLLRDILREETSRILTVDSIQKRVADFYELKVSDLTGKRRPNSIAFPRQIAMY 413 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 LS+ +T RS +IG+ FG RDH TV+HA + V +E D+ ++ V+ L+ + + Sbjct: 414 LSRRLTERSLKDIGQAFGGRDHGTVIHANKLVASRMEEDVRVRDIVQRLEEELRD 468 >gi|239980787|ref|ZP_04703311.1| chromosomal replication initiation protein [Streptomyces albus J1074] Length = 697 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 119/380 (31%), Positives = 194/380 (51%), Gaps = 14/380 (3%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 P + L + T + L+ +++F TF+ G+SNR A Sbjct: 326 PVGSALPASSGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASNRF-----AHAAA 380 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 V NPLF++ GLGKTHLL AI + + P RV Y+++E F F ++I Sbjct: 381 VAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSI 440 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 RD + + R +D+LL+DD+QFL K Q EF H N+L ++ KQ+V ++DRPP + Sbjct: 441 RDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 500 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 L +L+ R+R+R + G+ + + E R +IL+ + +LN EVL +A + Sbjct: 501 LVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLNAPPEVLEFIASRI 555 Query: 365 TTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGET--KKMRIEDIQRMVAKH 421 + + REL+GA ++ S + + + +L L+ GE ++ I A + Sbjct: 556 SRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDAAPEITATAIMAATADY 615 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 + ++ DL + R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ Sbjct: 616 FGLTVEDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRA 675 Query: 482 MLETDITLKKEVELLKRLIS 501 ++ ++ +V L I Sbjct: 676 LMAERRSIYNQVTELTNRIK 695 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 39/104 (37%), Gaps = 5/104 (4%) Query: 34 NCESIFTIVSSRL----KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V L + Q W +R + +++ + L+VP F K ++ R Sbjct: 7 DLAAVWPRVLEHLLGDGRGQGVEAKDEQWVRRCQPLALVADTALLAVPNEFAKGVLEGRL 66 Query: 90 LETITKLFQEEHSRIQGVEILVR-SVALPSVEKTASSPSITKLS 132 +++ E R + I V ++ P+ + P Sbjct: 67 APVVSETLSRECGRPIRIAITVDPTMGDPAPPQRYPEPPSRPAQ 110 >gi|291452646|ref|ZP_06592036.1| chromosomal replication initiator protein dnaA [Streptomyces albus J1074] gi|291355595|gb|EFE82497.1| chromosomal replication initiator protein dnaA [Streptomyces albus J1074] Length = 648 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 119/380 (31%), Positives = 194/380 (51%), Gaps = 14/380 (3%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 P + L + T + L+ +++F TF+ G+SNR A Sbjct: 277 PVGSALPASSGAPGPLAAQPAPATGPGEPTARLNPKYLFDTFVIGASNRF-----AHAAA 331 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 V NPLF++ GLGKTHLL AI + + P RV Y+++E F F ++I Sbjct: 332 VAVAEAPAKAYNPLFVYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEEFTNEFINSI 391 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 RD + + R +D+LL+DD+QFL K Q EF H N+L ++ KQ+V ++DRPP + Sbjct: 392 RDGKGDSFRKRYREMDILLVDDIQFLADKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQ 451 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 L +L+ R+R+R + G+ + + E R +IL+ + +LN EVL +A + Sbjct: 452 LVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLNAPPEVLEFIASRI 506 Query: 365 TTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGET--KKMRIEDIQRMVAKH 421 + + REL+GA ++ S + + + +L L+ GE ++ I A + Sbjct: 507 SRNIRELEGALIRVTAFASLNRQPVDLGLTEIVLKDLIPGGEDAAPEITATAIMAATADY 566 Query: 422 YNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEK 481 + ++ DL + R R +V RQ+AMYL + +T S P+IG +FG RDHTTV+HA RK+ Sbjct: 567 FGLTVEDLCGSSRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTVMHADRKIRA 626 Query: 482 MLETDITLKKEVELLKRLIS 501 ++ ++ +V L I Sbjct: 627 LMAERRSIYNQVTELTNRIK 646 >gi|295101863|emb|CBK99408.1| chromosomal replication initiator protein DnaA [Faecalibacterium prausnitzii L2-6] Length = 440 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 133/466 (28%), Positives = 230/466 (49%), Gaps = 37/466 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI-VHLSVPTNFLKAWIKNRYLETIT 94 + + S K Q+ Y + L+ S + + LSV +F+ + +RYL + Sbjct: 5 KDVLEAAQSYCKAQMAEPTYNLYIDGLEPISFEDSSHITLSVRNDFICKIVTDRYLGLLK 64 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + F+ + ++V + ++L +Q + Sbjct: 65 EAFKTVLGFDVDITLVV------------------------PSTPPHEVVLAQQYEANPA 100 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + F F FI+G SN+ A AAQ++A S Y NPLFI+ GLGKTHLL Sbjct: 101 SPQGNYEFTFENFIKGPSNQFAFAAAQAVAANPSGAY-----NPLFIYGGSGLGKTHLLT 155 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + P+ ++Y+T E F +AIR + + R DLLL+DD+QF+ GK Sbjct: 156 AIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRVADLLLVDDIQFIAGK 215 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H NSL D+ KQ+V A+DRP E++SL+ R+R+R + G++ + D+E R Sbjct: 216 ESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEWGLTADVQPPDFETRV 275 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +I+K + E L++ E+V +A + + R+L+GA +L + I + Sbjct: 276 AIVKR-----KAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYMLEGIQPVISV 330 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + ++N + + IE I V++ +N+S D+ +R V R+VA+Y+ + + Sbjct: 331 AQNAIKDILNETQPVPVTIEKIVGEVSRTFNVSPADIRGTKRNANVASARRVAIYILREV 390 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 T S EIGR F RDH+T++++++ +E+ ++ D L++ V + + Sbjct: 391 TGMSMEEIGREFSGRDHSTIVYSLKTMERDMKNDQHLRETVSDIIK 436 >gi|212550358|ref|YP_002308675.1| chromosomal replication initiation protein DnaA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548596|dbj|BAG83264.1| chromosomal replication initiation protein DnaA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 455 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 119/462 (25%), Positives = 221/462 (47%), Gaps = 20/462 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ +++ + + + +WF + N + P F +++ +Y + I + Sbjct: 7 IWHQCLKIIEDNITENTFHTWFSPIVPLKYEDNNFTIQTPNQFFYEYLEEKYAKLILQSL 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + IL + + + T +T+ ++S K T+ + S Sbjct: 67 FQVTGKQI---ILTYQIIINNDFDRNKKKYTTSQRDCSTSFNESQ----KTTLIKDWNSN 119 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++R F F E +N+VA AQ +A+ NP FI+ G+GKTHL AI Sbjct: 120 LNNRQTFRNFFESDNNKVAYVIAQKVAQEPGKD-----FNPYFIYGGPGVGKTHLCHAIG 174 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + RV+Y+ A F ++ +IR + + ID+L++DD+ L GK Sbjct: 175 NKVTEFHFQKRVIYIPAHLFQIQYTDSIRKHEPNEFIHFYQGIDILILDDIHELSGKEKT 234 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 + H+ N L +Q++ AD+ P+E+ L+ R+ SRL+ G+++ L D E+R IL Sbjct: 235 LQAYFHIFNHLHQLGRQIILTADKIPAEIIGLEERLTSRLKWGLTIELQKPDLELRKKIL 294 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADE 395 + +L++ EEV+ ++A V + R+L+G L+ + E A + Sbjct: 295 N-----YRIRQRRLSVPEEVIDYIAENVPENARDLEGIVTSLIAYSLVDNCEINLESAQK 349 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ +V K++ +E IQ +V+ ++ ++ + + S R R +V+ RQ+AM+LSK T Sbjct: 350 IVGKIVRKK-KKQITLEKIQNIVSSYFKVNIDQIHSKSRKREIVQARQIAMFLSKKHTDH 408 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 S+ IG + G RD TTVLHA + V+ L+ + + ++ Sbjct: 409 SYSLIGEQIGKRDRTTVLHACKSVQNNLDLSKRFRSTMRDIE 450 >gi|54021965|ref|YP_116207.1| putative replication initiator protein [Nocardia farcinica IFM 10152] gi|61212513|sp|Q5Z3Z8|DNAA_NOCFA RecName: Full=Chromosomal replication initiator protein DnaA gi|54013473|dbj|BAD54843.1| putative replication initiator protein [Nocardia farcinica IFM 10152] Length = 662 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 123/398 (30%), Positives = 207/398 (52%), Gaps = 17/398 (4%) Query: 111 VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ---TISPVFGSP-LDSRFVFST 166 +R A + + P P+ P K T +P S L++++ F T Sbjct: 273 LREPAAGHDVRESDGPVERDDEPVVNIRDSWPTYFAKNQESTPAPANSSASLNAKYTFET 332 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G+SNR A V NPLF+ + GLGKTHLL A + + + P Sbjct: 333 FVIGASNRF-----AHAAAVAIAEAPARAYNPLFVWGASGLGKTHLLHAAGHYAQRLFPG 387 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLN 285 +RV Y++ E F F +++RD+ + K R D+LL+DD+QF++GK IQ EF H N Sbjct: 388 MRVKYVSTEEFTNDFINSLRDDRKVAFKRRYRETDILLVDDIQFIEGKEGIQEEFFHTFN 447 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Sbjct: 448 TLHNANKQIVVSSDRPPKQLATLEERLRTRFEWGLITDVQPPELETRIAILRK-----KA 502 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTG 404 +L++ +VL +A V + REL+GA ++ S L +A+ +L L+ Sbjct: 503 RMDRLDVPHDVLELIASRVERNIRELEGALIRVTAFASLNGQPLDLSLAEVVLRDLMPDT 562 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 T ++ I + A+++N + +L + R + + RQ+AMYL + +T S P+IG+ F Sbjct: 563 ATLEINAATIMAVTAEYFNTTLEELTGPGKARPLAQARQIAMYLCRELTDLSLPKIGQAF 622 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 G RDHTTV++A +KV K + + +V+ L I + Sbjct: 623 G-RDHTTVMYAEKKVRKEMTERRRVYDQVQELTARIKQ 659 Score = 46.2 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 1/107 (0%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF-QEEHSRIQGVEILVRSVAL 116 W + +K +V LSVP++ + I+ E I + + +++G+ + + + A Sbjct: 38 WLKLVKPITVAQGFALLSVPSSLAQEAIERDLREPILRSLGRRLGPQVEGLGVRIAAPAT 97 Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 P+ E+ A++P +++ + G V R+ Sbjct: 98 PTAERAAANPRHARMTSRPERPRGERPVPGLPGQEAVDRPETLPRYS 144 >gi|90408442|ref|ZP_01216602.1| chromosomal replication initiation protein [Psychromonas sp. CNPT3] gi|90310426|gb|EAS38551.1| chromosomal replication initiation protein [Psychromonas sp. CNPT3] Length = 386 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 138/379 (36%), Positives = 217/379 (57%), Gaps = 15/379 (3%) Query: 127 SITKLSPINTNISKSPIILGKQTISPV-FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 + + P++ +S + G+ + V S L ++ F F+EG SN A+ Q IAE Sbjct: 18 EMQQKKPVHKPVSSAQPWDGENKANKVAHKSNLIKKYTFDNFVEGKSNNFAIATTQQIAE 77 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 Y NPLF++A GLGKTHLL A+ NA + P +VVY+ +E F+ ++I Sbjct: 78 NPGDVY-----NPLFLYAHPGLGKTHLLHAVGNAIVAANPESKVVYIRSERFVQDMINSI 132 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 R+N K+ ++D LLIDD+ F GK Q NS+LD+ +QV+ +DR P E Sbjct: 133 RNNTIEQFKEYYASLDALLIDDIHFFAGKDRSQEVLFQTFNSMLDAHQQVILTSDRFPKE 192 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 +E +D R+R+R G+S+P+ + E R +IL I++ E+ L + ++V +A+ + Sbjct: 193 IEGIDERLRTRFGWGLSIPIDPPELETRVAIL-----ITKAEERGLVLPDDVAFFIAKRL 247 Query: 365 T-TSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 T T R L+GA + + F +T + + L ++ T++ IE+IQ++VA+HY Sbjct: 248 TITDVRVLEGAIANISAKAQFTGQDITISLVQDALRDMLAV-HTRQTTIENIQKIVAEHY 306 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 I +D+ S RR RTV RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RKV ++ Sbjct: 307 RIKTSDMSSKRRTRTVARPRQIAMALAKELTQHSLPEIGEAFGGRDHTTVLHACRKVAEL 366 Query: 483 LETDITLKKEVELLKRLIS 501 + ++++ ++L R +S Sbjct: 367 RRENNDIQEDYKILIRTLS 385 >gi|318079379|ref|ZP_07986711.1| chromosomal replication initiation protein [Streptomyces sp. SA3_actF] Length = 361 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 115/351 (32%), Positives = 188/351 (53%), Gaps = 14/351 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ +++F TF+ G+SNR A V NPLFI+ GLGKTHLL Sbjct: 19 TARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 73 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 74 AIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADK 133 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G++ + + E R Sbjct: 134 ESTQEEFFHTFNTLHNANKQIVLSSDRPPRQLVTLEDRLRNRFEWGLTTDVQPPELETRI 193 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 194 AILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGL 248 Query: 393 ADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ + ++ I A ++ + DL + R R +V RQ+AMYL + Sbjct: 249 TEIVLKDLIPGGEDASPEITASAIMSATADYFGQTVEDLCGSSRSRVLVTARQIAMYLCR 308 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 309 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 359 >gi|160944267|ref|ZP_02091496.1| hypothetical protein FAEPRAM212_01776 [Faecalibacterium prausnitzii M21/2] gi|158444449|gb|EDP21453.1| hypothetical protein FAEPRAM212_01776 [Faecalibacterium prausnitzii M21/2] gi|295103715|emb|CBL01259.1| chromosomal replication initiator protein DnaA [Faecalibacterium prausnitzii SL3/3] Length = 440 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 132/466 (28%), Positives = 229/466 (49%), Gaps = 37/466 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI-VHLSVPTNFLKAWIKNRYLETIT 94 + + K Q+ Y + L+ S + + LSV +F+ + +RYL + Sbjct: 5 KDVLEAAQMYCKAQMAEPTYNLYIDGLEPISFEDSSHITLSVRNDFICKIVTDRYLGLLK 64 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + F+ + ++V + ++L +Q + Sbjct: 65 EAFKSVLGFDVDITLVV------------------------PSTPPHEVVLAQQYEANPA 100 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + F F FI+G SN+ A AAQ++A S Y NPLFI+ GLGKTHLL Sbjct: 101 SPQGNYEFTFENFIKGPSNQFAFAAAQAVAANPSGAY-----NPLFIYGGSGLGKTHLLT 155 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + P+ ++Y+T E F +AIR + + R DLLL+DD+QF+ GK Sbjct: 156 AIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRVADLLLVDDIQFIAGK 215 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H NSL D+ KQ+V A+DRP E++SL+ R+R+R + G++ + D+E R Sbjct: 216 ESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEWGLTADVQPPDFETRV 275 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +I+K + E L++ E+V +A + + R+L+GA +L + I + Sbjct: 276 AIVKR-----KAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYMLEGIQPVISV 330 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + ++N + + IE I V++ +N+S D+ +R V R+VA+Y+ + + Sbjct: 331 AQNAIKDILNETQPVPVTIEKIIGEVSRTFNVSPADIRGTKRNANVASARRVAIYILREV 390 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 T S EIGR F RDH+T++++++ +E+ ++ D L++ V + + Sbjct: 391 TGMSMEEIGREFSGRDHSTIVYSLKTMERDMKNDQHLRETVSDIIK 436 >gi|257437736|ref|ZP_05613491.1| DNA replication initiator protein, ATPase [Faecalibacterium prausnitzii A2-165] gi|257200043|gb|EEU98327.1| DNA replication initiator protein, ATPase [Faecalibacterium prausnitzii A2-165] Length = 440 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 132/466 (28%), Positives = 230/466 (49%), Gaps = 37/466 (7%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNI-VHLSVPTNFLKAWIKNRYLETIT 94 + + + K Q+ Y + L+ S + + LSV +F+ + +RYL + Sbjct: 5 KDVLEAAQAYCKTQMAEPTYNLYIDGLEPISFEDSSHITLSVRNDFICKIVTDRYLGLLK 64 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + F+ + ++V + ++L +Q + Sbjct: 65 EAFKTVLGFDVDITLVV------------------------PSTPPHEVVLAQQYEANPA 100 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + F F FI+G SN+ A AAQ++A S Y NPLFI+ GLGKTHLL Sbjct: 101 SPQGNYEFTFENFIKGPSNQFAFAAAQAVAANPSGAY-----NPLFIYGGSGLGKTHLLT 155 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + P+ ++Y+T E F +AIR + + R DLLL+DD+QF+ GK Sbjct: 156 AIQTEIKRTHPDFVIMYVTCEQFTNELIAAIRAGSTEDFRMKYRVADLLLVDDIQFIAGK 215 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H NSL D+ KQ+V A+DRP E++SL+ R+R+R + G++ + D+E R Sbjct: 216 ESTQEEFFHTFNSLHDAHKQIVIASDRPAKEIKSLEERLRTRFEWGLTADVQPPDFETRV 275 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEI 392 +I+K + E L++ E+V +A + + R+L+GA +L + I + Sbjct: 276 AIVKR-----KAELLHLDLPEDVAEFIANHLKNNIRQLEGAVKKLNAYYMLEGIQPVISV 330 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + ++N + + IE I V++ +N+S D+ +R V R+VA+Y+ + + Sbjct: 331 AQNAIKDILNETQPVPVTIEKIVGEVSRTFNVSPADIRGTKRNANVASARRVAIYILREV 390 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 T S EIGR F RDH+T++++++ +E+ ++ D L++ V + + Sbjct: 391 TGMSMEEIGREFSGRDHSTIVYSLKTMERDMKNDQHLRETVSDIIK 436 >gi|227873171|ref|ZP_03991462.1| DNA-directed DNA replication initiator protein [Oribacterium sinus F0268] gi|227841002|gb|EEJ51341.1| DNA-directed DNA replication initiator protein [Oribacterium sinus F0268] Length = 381 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 125/352 (35%), Positives = 214/352 (60%), Gaps = 15/352 (4%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+SR+ F +F+ GSSN +A A + AE+ Y NPL+I+ GLGKTHL+Q Sbjct: 39 NANLNSRYTFDSFVVGSSNALAHAACVAAAEMPGEQY-----NPLYIYGGAGLGKTHLMQ 93 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNLKDSLRNIDLLLIDDMQFL 271 ++A+ +++ N ++ Y+T+E F+ F +IR+ + R +D+LLIDD+QFL Sbjct: 94 SVAHYILQQNKNAKIRYVTSETFINEFVDSIRNKNNISPAEFRRKYRELDVLLIDDIQFL 153 Query: 272 QGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N+L D+ KQ++ A+D+PP ++++++ R+ SR + G++V + L D E Sbjct: 154 IGKEGTQEEFFHTFNALYDNRKQIIIASDKPPKKIDNIEERLLSRFEVGLTVDIQLPDVE 213 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R +IL+ ++E NI+ EV+ ++A + ++ REL+GA ++V + +T Sbjct: 214 TRMAILRK-----KEELEGYNIDNEVIKYIADNIKSNVRELEGALTKVVAKSRLIKQPVT 268 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A+ELL + E K++ + I +VA+H+ +S +DL+S R+ + +V PRQ+AMYL Sbjct: 269 LSLAEELLKDNITPAEKKELTPKWIIEVVAEHHGLSLSDLVSKRKNKEIVIPRQIAMYLC 328 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + MT +G G RDH+T++H K+ K L T+ L+ +E+L++ IS Sbjct: 329 REMTSIPLNTVGELLGGRDHSTIIHGCDKISKELSTNEQLQSTIEVLRKKIS 380 >gi|149186374|ref|ZP_01864687.1| chromosomal replication initiator protein [Erythrobacter sp. SD-21] gi|148829963|gb|EDL48401.1| chromosomal replication initiator protein [Erythrobacter sp. SD-21] Length = 489 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 156/472 (33%), Positives = 261/472 (55%), Gaps = 15/472 (3%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHL--SVPTNFLKAWIKNRYL 90 VN + + +S L+ +G +++ W + ++ + L +PT F W+K+R+ Sbjct: 27 VNLAADWADISQGLRKDLGHQLHSQWIKPIQLGKIDAETGTLDLFLPTEFSANWVKDRFA 86 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + ++ ++ S ++ V I V + S + +T++ T Sbjct: 87 DRLSLAWKIARSEVRKVAISVHPGRRQVADLRLHSDGRRPANDADTSMMAIGADTLGDT- 145 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 LD+ F+ F+ G +N +A AAQ +A + + +PL++ A+ G GKT Sbjct: 146 GFTSSVGLDASLTFAAFVTGEANILAFNAAQRMAATEKP-----QFSPLYLKAATGQGKT 200 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI + ++ R+ Y +AE FM F A++ N + K LR+ DLLL+DD+QF Sbjct: 201 HLLHAIGHTFLQTHNRSRIFYCSAERFMVEFVQALKANRMIEFKARLRSFDLLLVDDIQF 260 Query: 271 LQGKLI-QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 + GK Q E + +++LL K++V AADR P L+ ++PR+ SRL G+ + D Sbjct: 261 IIGKASAQEELLYTIDALLAEGKRLVFAADRAPQALDGVEPRLLSRLSMGLVADIQPADI 320 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E+R IL ++L + L + E+VL +ART+T + REL G N+L+ + Sbjct: 321 ELRKKILHSKL----TKFAPLAVPEDVLDFLARTITRNVRELVGGLNKLIAYAQLTGQEV 376 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + ++A+E L+ ++ + +++ I++IQR V + Y I R+++ S RR R VVRPRQVAMYL Sbjct: 377 SLQLAEEQLTDIL-SANRRRITIDEIQRTVCQFYRIDRSEMSSKRRARAVVRPRQVAMYL 435 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 SK++TPRS+PEIGR+FG RDH+TV+HAVR +E + + D + +V L R + Sbjct: 436 SKVLTPRSYPEIGRKFGGRDHSTVIHAVRLIEDLRQRDADMDGDVRSLLRQL 487 >gi|194097590|ref|YP_002000626.1| chromosomal replication initiation protein [Neisseria gonorrhoeae NCCP11945] gi|193932880|gb|ACF28704.1| putative chromosomal replication protein (DnaA) [Neisseria gonorrhoeae NCCP11945] gi|317165576|gb|ADV09117.1| chromosomal replication initiation protein [Neisseria gonorrhoeae TCDC-NG08107] Length = 502 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 142/512 (27%), Positives = 237/512 (46%), Gaps = 72/512 (14%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHS------- 102 + +A W L + + F +K+++ I + +E + Sbjct: 2 LPHGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGKIEAVREELAAGRPAFVF 60 Query: 103 ----------------------------------RIQGVEILVRSVALPSVEKTASS--- 125 + E+ P+ KTA+ Sbjct: 61 KPGEGVRYEMAAVEGAVEPAEPSLHAGSEEMPVQEVLLDELPSEKPVKPAASKTAADILA 120 Query: 126 ------PSITKLSPINTNISKSPIILGKQTISPV-------FGSPLDSRFVFSTFIEGSS 172 P + + + +S + +T + + L + F T +EG Sbjct: 121 ERMKNLPHEPRQAAGPASRPESAAVAKARTDAQRDAEEARYEQTNLSPDYTFDTLVEGKG 180 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ N +K +P+ +V Y+ Sbjct: 181 NRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVGNELLKNRPDAKVRYM 235 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N + Sbjct: 236 HSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNEK 295 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E ++ Sbjct: 296 KQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAILQK-----KAEAAGIS 350 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKM 409 I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ K + Sbjct: 351 IEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLARTALQDIIAEKH-KVI 409 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 + I VAK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG RDH Sbjct: 410 TADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRDH 469 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 501 >gi|11132617|sp|Q9ZH76|DNAA_STRRE RecName: Full=Chromosomal replication initiator protein DnaA gi|3808288|gb|AAD08806.1| DNA replication initiator protein [Streptomyces reticuli] Length = 643 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 116/351 (33%), Positives = 189/351 (53%), Gaps = 14/351 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ +++F TF+ G+SNR A V NPLFI+ GLGKTHLL Sbjct: 301 TARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 355 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 356 AIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADK 415 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 416 ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 475 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 476 AILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGL 530 Query: 393 ADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ T ++ I A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 531 TEIVLKDLIPGGEDSTPEITATAIMAATADYFGLTVDDLCGSSRGRQLVTARQIAMYLCR 590 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 591 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 641 Score = 54.3 bits (129), Expect = 5e-05, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 4/113 (3%) Query: 34 NCESIFTIVSSRL----KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + Q W +R + +++ + L+VP F K ++ R Sbjct: 7 DLAAVWPRVLEQLLGEGRGQGVEAKDEHWIRRCQPLALVADTALLAVPNEFAKGVLEGRL 66 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 +++ E R + I V A + K + P Sbjct: 67 APIVSETLSRECGRPIRIAITVDDSAGEPPPAAPPAQQTPKPRYEEPELPSGP 119 >gi|331693900|ref|YP_004330139.1| Chromosomal replication initiator protein dnaA [Pseudonocardia dioxanivorans CB1190] gi|326948589|gb|AEA22286.1| Chromosomal replication initiator protein dnaA [Pseudonocardia dioxanivorans CB1190] Length = 555 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 115/385 (29%), Positives = 198/385 (51%), Gaps = 12/385 (3%) Query: 120 EKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTA 179 AS P + S L+ ++ F TF+ G+SNR + Sbjct: 177 PPPASGIPGPDSRPGQDGWPTYSAPAPDAPPAARSRSMLNEKYTFDTFVIGASNRFSHA- 235 Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 A V NPLFI GLGKTHLL A+ + + + P +RV Y++ E F Sbjct: 236 ----AAVAVAEAPARAYNPLFIWGESGLGKTHLLHAVGHYAQRLFPGMRVRYVSTEEFTN 291 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAA 298 F +++RD+ + + R++D+LL+DD+QFL+GK Q EF H N+L +S KQ+V ++ Sbjct: 292 DFINSLRDDRKVAFQRRYRDVDVLLVDDVQFLEGKEGTQEEFFHTFNTLHNSNKQIVVSS 351 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DRPP LE+L+ R+R+R + G+ + + E R +IL+ + A + L + +VL Sbjct: 352 DRPPKRLETLEDRMRTRFEWGLITDIQPPELETRIAILRKKAAQDR-----LAVPGDVLE 406 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A + + REL+GA ++ S + ++A+ +L L+ ++ I + Sbjct: 407 FIAARIERNIRELEGALIRVTAFASLNRQPVDTQLAEIVLRDLIPDSAASEITAPTIMAV 466 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 A+ ++++ ++L + + + + RQ+AMYL + +T S P IG+ FG RDHTTV+HA + Sbjct: 467 TAEFFDVTMDELCGPGKTKALAQARQIAMYLCRELTDLSLPRIGQTFGGRDHTTVMHADK 526 Query: 478 KVEKMLETDITLKKEVELLKRLISE 502 K+ + ++V+ L I + Sbjct: 527 KIRNEISLRRKTFEQVQELTARIKQ 551 Score = 43.1 bits (100), Expect = 0.11, Method: Composition-based stats. Identities = 18/137 (13%), Positives = 37/137 (27%), Gaps = 10/137 (7%) Query: 34 NCESIFTIVSSRLKNQ--------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWI 85 + +++ V L + ++ + + +L L+ P+ F K I Sbjct: 7 DLGAVWNRVIGDLSGSSGDGDTPPLSAQQ-RAFLRLTRPLGLLDGTALLAAPSEFAKDAI 65 Query: 86 KNRYLETITKLFQEEHSRIQGVEILVR-SVALPSVEKTASSPSITKLSPINTNISKSPII 144 + + I+ + ++V S A E S P Sbjct: 66 ERILRKPISDALGRHLGVQVNLAVVVDASAASGGTEVPDPPDPRAAARVAPAERSAGPSG 125 Query: 145 LGKQTISPVFGSPLDSR 161 L PL + Sbjct: 126 LAASVDVVGDAEPLSAN 142 >gi|229496699|ref|ZP_04390413.1| chromosomal replication initiator protein DnaA [Porphyromonas endodontalis ATCC 35406] gi|229316596|gb|EEN82515.1| chromosomal replication initiator protein DnaA [Porphyromonas endodontalis ATCC 35406] Length = 471 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 118/480 (24%), Positives = 216/480 (45%), Gaps = 19/480 (3%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL-HNIVHLSVPTNFLKAWIKNRY 89 +E N SI+ L + + + WF ++ + +N + + VP+ F +I+ + Sbjct: 1 MEQNVNSIWQECLVHLSSHIPSKQFNIWFHPIEPVRLEGNNTIVVKVPSAFFCEYIEQNF 60 Query: 90 LETITKLFQEEHSRIQGVEIL--VRSVALPSVEK---TASSPSITKLSPIN-TNISKSPI 143 + + + + L V S + + E T+ S + SP + P Sbjct: 61 AIQMQQALRSVLGEHARLRYLAMVDSTSNNTAEGCLLTSMSEASLSTSPASIPQGISVPH 120 Query: 144 ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHA 203 T + + L F F +FI G SN VAL+ A+ I +NP FI+ Sbjct: 121 NDVGATNPTQWDTKLLPPFTFDSFIRGESNDVALSLARRICVEPGDA----MMNPFFIYG 176 Query: 204 SVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLL 263 G+GKTH++ A+ +++ +LRV+Y+T F+ +F +A ++ + + ID+L Sbjct: 177 PPGVGKTHMMNAMGWEILRQHSDLRVLYVTTLQFVQQFTAASKNKKVPDFIKYYQQIDVL 236 Query: 264 LIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSV 322 L+DD+Q L+GK Q F + N L KQ+V +DR S+ +L RI SR+ G ++ Sbjct: 237 LLDDIQELEGKERSQQAFFEIFNHLYSLGKQIVLTSDRSVSDFNALSERIVSRMAGSLTA 296 Query: 323 PLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH 382 + D +R IL + + EEV + + + S RE+DG + + Sbjct: 297 QIKRPDLCLRREILNKL-----ASQGGVVLTEEVSDFIVKNASHSVREIDGVLSSIFLSA 351 Query: 383 S-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRP 441 S + + E+LS + E +++ +E+IQ++V ++++I + + R + +V Sbjct: 352 SVTGSPIDLSFSREILSRTIR-MEEREVTLENIQKLVCENFHIPAHQVKGKSRRQDIVMA 410 Query: 442 RQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 R + M+L+ T S IG G R H TV+H + D + L++ + Sbjct: 411 RHIIMFLANKHTKESLSSIGHYLGGRSHATVIHGCNSTRDAISIDHEFATTISKLEQQLQ 470 >gi|325200955|gb|ADY96410.1| chromosomal replication initiator protein DnaA [Neisseria meningitidis H44/76] Length = 502 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 143/512 (27%), Positives = 235/512 (45%), Gaps = 72/512 (14%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH-------- 101 + +A W L + + F +K+++ I + +E Sbjct: 2 LPQGQFAQWIAPLTVGE-EGGVWVVYGKNQFACNMLKSQFAGKIEAVREELAAGRSAFVF 60 Query: 102 --------------SRIQGVEILVRSVAL---------------PSVEKTASSPSITKLS 132 ++ E + +V+ V+ AS + L+ Sbjct: 61 KPGEGVRYEMAAVEGAVEPAEPSLHAVSEGMPVQEVLLDELPSEEPVKPAASKTAADILA 120 Query: 133 PINTNISKSPIILGKQTISPVF--------------------GSPLDSRFVFSTFIEGSS 172 N+ P P + L + F T +EG Sbjct: 121 ERMKNLPHEPRQAAGSASRPESVAVAKARTDVQRDAEEARYEQTNLSPDYTFDTLVEGKG 180 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ N +K +P+ +V Y+ Sbjct: 181 NRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVGNELLKNRPDAKVRYM 235 Query: 233 TAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSA 291 ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N + Sbjct: 236 HSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNEK 295 Query: 292 KQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLN 351 KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E ++ Sbjct: 296 KQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAILQK-----KAEAAGIS 350 Query: 352 INEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKM 409 I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ K + Sbjct: 351 IEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLARTALQDIIAEKH-KVI 409 Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 + I VAK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG RDH Sbjct: 410 TADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRDH 469 Query: 470 TTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 TTV+H +R V K+ E D L ++ E L LI Sbjct: 470 TTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 501 >gi|238021640|ref|ZP_04602066.1| hypothetical protein GCWU000324_01542 [Kingella oralis ATCC 51147] gi|237866254|gb|EEP67296.1| hypothetical protein GCWU000324_01542 [Kingella oralis ATCC 51147] Length = 519 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 131/524 (25%), Positives = 232/524 (44%), Gaps = 71/524 (13%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + ++ + L++++ ++ + L F ++ +Y Sbjct: 1 MRLPEFWSQCLALLQSELSEQQFSRDIAPITVGE-QDGAWVLFAKNQFAANLLRTQYARK 59 Query: 93 ITKLF----------------------------------QEEHSRIQGVEILVRSVALPS 118 I + + S + ++ P+ Sbjct: 60 IHEAAALIAPDAPELLFQAGVGERVAMAQVPADVVSPVNNDRGSLKTANDNQAQTETAPA 119 Query: 119 VEKTAS-----------SPSITKLSPINTNISKSPIILGKQTIS------------PVFG 155 E T S + ++ L P + + P + + + Sbjct: 120 SEPTPSPARNKSAQDILAERMSNLRPAKQSPQRQPENAASKPSAIAAEQAREAAEQRLNQ 179 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + L + F T +EG N++A A+SIAE NP F++ S GLGKTHL+QA Sbjct: 180 TNLSPDYTFETLVEGKGNQLAANVAKSIAEKPG----DSMYNPFFVYGSTGLGKTHLVQA 235 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK- 274 I N ++ P +V Y+ ++ ++ F + +R+ K + +LL+IDD+QF+ GK Sbjct: 236 IGNELLRLNPKAKVRYMHSDEYLKTFMATVRNKTWDTFKQQYLHYNLLIIDDIQFISGKD 295 Query: 275 LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 EF L +Q++ D+ PS LE +D R+ SR G+++ L + EMR Sbjct: 296 RTMEEFFFLFEHFHSRDQQIILTCDQLPSSLEDMDKRLVSRFSWGMTIRLEPPELEMRVD 355 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEI 392 IL+ + + + + E+ +A+ V + REL+GA N+++ R F A + ++ Sbjct: 356 ILER-----KAQAAGIMLEEDAATFIAQNVKQNVRELEGALNRVIARCRFSKASTIDIDL 410 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A + L +V + K + +E I + VA HY+IS D+L +R R + RPRQ+AM ++K + Sbjct: 411 ATDALQDIVASNY-KPITVELIMKAVADHYHISIRDILGKKRSRNLARPRQIAMAITKEL 469 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 T S P IG FG RDHTTV+HAV+ + K+ + + LK++ E L Sbjct: 470 TNLSLPAIGDAFGGRDHTTVMHAVKTIAKLRQDEPELKQDYEKL 513 >gi|320535593|ref|ZP_08035690.1| replication initiator protein DnaA [Treponema phagedenis F0421] gi|320147556|gb|EFW39075.1| replication initiator protein DnaA [Treponema phagedenis F0421] Length = 466 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 143/476 (30%), Positives = 242/476 (50%), Gaps = 18/476 (3%) Query: 31 LEVN-CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 ++++ E + +LK ++ + WF ++ F+S + + +SVP++F + +Y Sbjct: 1 MDISGYEIFWKETLKQLKEELNQGEFNMWFIQIDFNSSSDDSIEISVPSDFFRKEFSQKY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + F E ++ +++ L + + P + I Sbjct: 61 QKKLENKFLEISGHEISLQYVIKKPKLTNSANKSIIPEKKEEKREERKEKPQKIKNSHPA 120 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 L + F F+ G + AA S+A+ Y NPL I VGLGK Sbjct: 121 --------LKDNYTFDNFVAGEDLKFTQNAALSVAKFPGKNY-----NPLLILGGVGLGK 167 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAI N R +L ++Y+TAE F F SA+ K+ R D+LLIDD+ Sbjct: 168 THLMQAIGNEIY-RTTDLNIIYVTAESFSNEFISALGSKKTQEFKNKYRKADVLLIDDIH 226 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F Q K +Q E H N+L +S +Q+V DRP EL++ R++SR G++V L + Sbjct: 227 FFQNKDGLQEELFHTFNALYESGRQIVFTCDRPIKELKNFSERLKSRCTRGLNVDLTMPS 286 Query: 329 YEMRFSILKNRLAISQKEDP--KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP 386 +E R +IL +L I K +P + I++E++ +A+ V ++ R+L+G +++ + Sbjct: 287 FETRCAILIKKLEIYNKSNPDKNIKISDEIIHLIAQNVFSNVRDLEGCLTKIIAFTEISG 346 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 +T +I +LL + K + ++ I R+VA+ +NIS DL S +R +T+ PRQ+AM Sbjct: 347 EVTIDIIPDLLKDFFYLPKPKNVSVDIILRVVAEDFNISYVDLKSKKRTKTIAYPRQIAM 406 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 YL++ MT S E+G FG RDHTT++H V K+E + + +L+ + LK ISE Sbjct: 407 YLARQMTELSTTELGVEFGGRDHTTIIHGVEKIENEILINPSLQANLNSLKNTISE 462 >gi|119953225|ref|YP_945434.1| chromosomal replication initiator protein DnaA [Borrelia turicatae 91E135] gi|254777889|sp|A1QZM2|DNAA_BORT9 RecName: Full=Chromosomal replication initiator protein DnaA gi|119861996|gb|AAX17764.1| chromosomal replication initiator protein DnaA [Borrelia turicatae 91E135] Length = 484 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 129/489 (26%), Positives = 247/489 (50%), Gaps = 32/489 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++I++++ + ++ ++ + + WF+ L F + +S P +F K ++ R+ + I + Sbjct: 5 KNIWSLILAAIRKELSEEEFYIWFENLYFIDATDESIKISAPNSFHKNQVEKRFSKRIKE 64 Query: 96 LFQEEHSRIQGVEIL------------VRSVALPSVEKTASSPSITKLSPINTN--ISKS 141 + E+ VE + +++ +L + SP + +T I + Sbjct: 65 ILTEKGHNTINVEFINPPKEPKTHSMELKNTSLKDISIQQDSPEKRTILNTHTKNIIEHT 124 Query: 142 PIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 + K+ I + +P L ++ F FI G +N++A A+ SIA+ Y NP Sbjct: 125 KHYVIKEDIHTKYRNPFLKKKYTFENFIIGPNNKLAYNASLSIAKNPGKKY-----NPCL 179 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHLLQ+I N + + +++Y+TAE F+ F +I+ N K R++ Sbjct: 180 IYGGVGLGKTHLLQSIGNKTEELHKEFKILYVTAENFLNEFVESIKTNETKRFKKKYRHL 239 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR G Sbjct: 240 DMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQMVFTCDRQPSELINFTDRLKSRFTRG 299 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A +L Sbjct: 300 LNVDISKPNFELRVAIIEK-----KAEEDGIKVPKNILNLVAKKVTTNIRDLEAAVTKLK 354 Query: 380 FRHSFAPI-LTAEIADELLSHLV-----NTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 I + I D+++ ++ T + IE I++++ + ++ D+ N Sbjct: 355 AHIDLEDIEIDTSIVDKIIKEIIAYENDKTNTNNTINIESIKKVILRELKLTNKDIEGNS 414 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + + + R + YL + T S EIG+ G + H+TVL+++ K++K D+ + + Sbjct: 415 KKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDKERNNDLEINNLI 474 Query: 494 ELLKRLISE 502 L I++ Sbjct: 475 IELMNKINK 483 >gi|157414323|ref|YP_001481579.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81116] gi|172046981|sp|A8FJG5|DNAA_CAMJ8 RecName: Full=Chromosomal replication initiator protein DnaA gi|157385287|gb|ABV51602.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 81116] Length = 440 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 123/465 (26%), Positives = 230/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETITKLF 97 + LK ++ + Y ++ LKF+ L P L +I+ +Y + I+ + Sbjct: 4 NQILENLKKELSENEYENYIAILKFNEKQSKADFLVFNAPNELLAKFIQTKYGKKISHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + V I +S S I S I Sbjct: 64 EVQSGNKASVLIQAQSAKQSSKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I++ D G NP+FI+ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAISQKDKLG---KLYNPIFIYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|157165209|ref|YP_001465925.1| chromosomal replication initiation protein [Campylobacter concisus 13826] gi|166201870|sp|A7ZAW7|DNAA_CAMC1 RecName: Full=Chromosomal replication initiator protein DnaA gi|112801714|gb|EAT99058.1| chromosomal replication initiator protein DnaA [Campylobacter concisus 13826] Length = 436 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 129/465 (27%), Positives = 230/465 (49%), Gaps = 40/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETITKLF 97 + L+ ++ + + + ++LKF+ N + + + +IK RY E I L+ Sbjct: 4 DEILELLQTKISANEFDCYIKQLKFNEKASNEDFIVFNATSELMAKFIKTRYAEKIAYLY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + VEI S TKL I N I + +I Sbjct: 64 EVKTGKKPEVEIT----------------SQTKLKNIKQNQVNVKQIKAQSSI------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ G SN+ A A+++A+ Y NPLFI+ + GLGKTHLLQ++ Sbjct: 101 LNPGYTFENFVCGDSNQFAFLNAKAVADKPGVLY-----NPLFIYGTTGLGKTHLLQSVG 155 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N + + V+ +T++ FM F + + + ++ RN D+LLIDD+QFL I Sbjct: 156 NYCLDQ--GKVVICVTSDQFMIDFTTHLNSHSMTKFREKYRNCDVLLIDDVQFLGKTDKI 213 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N L+ Q+V +DRP L+ D R++SR + + + + + + +I+ Sbjct: 214 QEEFFNTFNELIAKKGQIVMTSDRPAKILKGFDERLKSRFEQSIMADITPPELDTKIAII 273 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 I + E K+ +N+EV+ ++A + + RE++GA L S + +T E A Sbjct: 274 -----IKKCEFDKIYLNKEVIDYIATNMGDNIREIEGAIINLNAYASLMRVEITLEFAKN 328 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L+ + + +E I +V+K NI +D+ S RV+ +V R++ +YL+K++T Sbjct: 329 TLKDLIKEKH-ENINLETIIEIVSKELNIKPSDIKSKSRVQNIVEARRIIIYLAKMLTTN 387 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P+I FG +DH+ V H ++K+ +++E++ V +K I Sbjct: 388 SMPQIANYFGMKDHSAVSHNIKKINELMESNEIFNLRVTEIKNKI 432 >gi|283956179|ref|ZP_06373664.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792333|gb|EFC31117.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni 1336] Length = 440 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 118/465 (25%), Positives = 232/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSTKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A +++A D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAVAHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARTLTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKI 434 >gi|237756304|ref|ZP_04584858.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium yellowstonense SS-5] gi|237691531|gb|EEP60585.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium yellowstonense SS-5] Length = 459 Score = 379 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 136/482 (28%), Positives = 232/482 (48%), Gaps = 31/482 (6%) Query: 21 TPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 N + + ++ ++ + L+ ++ Y L+ +++ P N Sbjct: 4 GKNNAGNTSNVSISESKLWQSILHDLREKIDNTSY-MILNSLEEVYYSEGNIYIYTPDNI 62 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 K WI+ LETI + R + I+ K + + + + +S Sbjct: 63 YKNWIETEILETIETSANKVIGRNVKIHIISLKDKSSKKTKKSKNSKNFEETDFYQYLS- 121 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 L+ ++ F I G++N+VA A ++ E Y NPLF Sbjct: 122 -----------------LNPKYTFDNLIVGNNNKVAFQACLAVTENLGKIY-----NPLF 159 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHLL A + + +++Y TA+ F S + L + R + Sbjct: 160 IYGDVGLGKTHLLHGTAYHVLAKNSTAKIIYTTADTFASELFSYLEKGMILEFRKKYREV 219 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLLLIDD+QFL GK Q EF H+ N L KQ++ ++D+PPS+L ++ R+ SR G Sbjct: 220 DLLLIDDIQFLVGKERTQIEFYHIFNVLYSLGKQIILSSDQPPSKLNGIEKRLISRFSSG 279 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + V + D E + +I + + ++ + + +V++ +A+TV TS REL+G+ +L Sbjct: 280 LIVEITKPDLETKINI-----TLKKMKELNVEFSRDVVLFIAKTVNTSVRELEGSIKRLK 334 Query: 380 FRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T ++A +L ++ E + + +E IQ+ V ++NI +LL N R + Sbjct: 335 AYSEIMGRPITLDVARTVLKDVLEVNEVQPLTVERIQKEVCNYFNIDIKELLGNSRNKKS 394 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V RQ+AMYLSK +T S I R F +DHTT+L+A K+++M+E D LK V+L+K Sbjct: 395 VTARQIAMYLSKELTDESLSSIARYFHKKDHTTILNAANKIKEMMEKDRKLKYTVDLIKD 454 Query: 499 LI 500 + Sbjct: 455 KL 456 >gi|319778796|ref|YP_004129709.1| Chromosomal replication initiator protein DnaA [Taylorella equigenitalis MCE9] gi|317108820|gb|ADU91566.1| Chromosomal replication initiator protein DnaA [Taylorella equigenitalis MCE9] Length = 520 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 133/525 (25%), Positives = 232/525 (44%), Gaps = 70/525 (13%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVH--LSVPTNFLKAWIKNRYLETIT 94 + ++L + ++ W + LK + L PT K W+++ Y TI Sbjct: 3 EFWQECLTKLTEILDENIVHKWIKPLKPLGFSEDDTVIKLEAPTELKKNWVQSYYANTIR 62 Query: 95 KLFQEEHSRIQGVEILVR------SVALPSVEKTASSPSITKLSPINTNISKSPII---- 144 + E + VE+++ S +PS + + P ++ PI +P Sbjct: 63 DVILEILNINVRVEVVLAPKPQTSSETIPSADFNPNDPVVSAEKPIIDRSIATPTKESYR 122 Query: 145 -------------------------------------------LGKQTISPVFGSPLDSR 161 + + + L+ R Sbjct: 123 DKTFEDNTFVMEFEPEKGESEAVESIEALPEPMGRYAYRGMAEIPRDMQQFYKATNLNQR 182 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 F + G SN +A AQ++ NPLFI+ GLGKTH++ AI N Sbjct: 183 LTFQNLVVGDSNELAYVTAQNVVRNIGK----HGYNPLFIYGKTGLGKTHIMHAIGNELF 238 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK---DSLRNIDLLLIDDMQFLQGK-LIQ 277 + V+Y+ AE + + + + + + N DLLL+DD+Q K Q Sbjct: 239 TKHKMRNVLYIHAETYYTEITRRMIEGRWVEYRAQDNKYINSDLLLMDDVQLFARKERTQ 298 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF L +L+++ KQVV + D P L++++ R++SR Q G+ + + D E+R SILK Sbjct: 299 QEFFVLYEALVNNDKQVVISCDTFPDNLDAIEDRLKSRFQNGLIIEIEPPDVELRVSILK 358 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL--TAEIADE 395 ++ K+ P + +EV +++A + ++ REL+GA +++ F I T + Sbjct: 359 SKA----KDFPDMEFTDEVALYIASNIKSNVRELEGALQKVMAYSQFKQIDKPTVDTCKA 414 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++ + +E+IQ+ VA +Y I +D+ S R +V+ R VAMYL+K +T Sbjct: 415 ALRDVLR-QRNGSLTVENIQKTVADYYKIRISDIYSKSRSANLVKARHVAMYLTKELTRN 473 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S PEIG+ FG RDH+T+ HAV K+ D L ++ +L++++ Sbjct: 474 SLPEIGQSFGGRDHSTIHHAVEKIASRRREDRQLNHDIRVLEQIL 518 >gi|224418815|ref|ZP_03656821.1| chromosomal replication initiation protein [Helicobacter canadensis MIT 98-5491] gi|253826661|ref|ZP_04869546.1| Chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] gi|313142334|ref|ZP_07804527.1| chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] gi|253510067|gb|EES88726.1| Chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] gi|313131365|gb|EFR48982.1| chromosomal replication initiator protein dnaA [Helicobacter canadensis MIT 98-5491] Length = 430 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 121/465 (26%), Positives = 224/465 (48%), Gaps = 43/465 (9%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 V +LK ++ P + ++ +L F+ + + + P N + +WIK +Y I +LF+ Sbjct: 4 VLLQLKREITPFEFDNYITQLSFNEKYSRDDRIIFNAPNNIIASWIKTKYSSKIAQLFEN 63 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 ++ + I V + + L+ Sbjct: 64 QNGYKPEIIIEVFNPNKK-------------------------KENKNNIKKIQNATNLN 98 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 F++FI G+SN A A+++A+ S Y NPL I+ + GLGKTHLL AI N Sbjct: 99 PSLTFNSFIVGNSNSFAFNVAKAVAQNQSTIY-----NPLVIYGNTGLGKTHLLNAIGNT 153 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 + V+Y T+E F+ + IR+N ++ R D LLIDD+QFL GK IQ Sbjct: 154 NA--NVGKSVIYTTSEQFLNDYLLHIRNNTMDRFREKYRACDYLLIDDIQFLSGKNQIQE 211 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N L + KQ+V +DRPP ++ L+ R+++R G+ + + E + +I+ Sbjct: 212 EFFHTFNELKKNNKQIVLTSDRPPKDMNGLEERLKTRFTSGLLADIQPPELETKINIIN- 270 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--LTAEIADEL 396 ++ E ++++ +++ +A + + RE++G +L F + I +T + ++ Sbjct: 271 ----AKCELDGIHLSPKIIDFIAANINDNIREIEGVLVKLNFSINVTNIQEITIDFVRDI 326 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L + + + ++ I VAK+YNI +++ S R + +V R++ +YL++ +TP S Sbjct: 327 LKEYIKES-KENINMDRIIENVAKYYNIKPSEIRSKSRSKNIVTARKIVIYLARTLTPNS 385 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + F +DH+TV A++ +++ + + K +E LK I Sbjct: 386 MLSLADYFDMKDHSTVSKAMKSIQEEINKNPNFKTIIEELKNKIK 430 >gi|307331907|ref|ZP_07611003.1| chromosomal replication initiator protein DnaA [Streptomyces violaceusniger Tu 4113] gi|306882425|gb|EFN13515.1| chromosomal replication initiator protein DnaA [Streptomyces violaceusniger Tu 4113] Length = 388 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 122/389 (31%), Positives = 197/389 (50%), Gaps = 17/389 (4%) Query: 117 PSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVA 176 P P + + ++ P + L+ +++F TF+ G+SNR Sbjct: 11 PLERARGGPPLLPSQTGAPGPLAAQPAPASGPGEP---TARLNPKYLFDTFVIGASNRF- 66 Query: 177 LTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEY 236 A V NPLFI+ GLGKTHLL AI + + P RV Y+++E Sbjct: 67 ----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARSLYPGTRVRYVSSEE 122 Query: 237 FMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVV 295 F F ++IRD A + R++D+LL+DD+QFL K Q EF H N+L ++ KQ+V Sbjct: 123 FTNEFINSIRDGKADAFRRRYRDMDILLVDDIQFLASKESTQEEFFHTFNTLHNANKQIV 182 Query: 296 AAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEE 355 ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + +LN E Sbjct: 183 LSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK-----KAVQEQLNAPPE 237 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGET--KKMRIE 412 VL +A ++ + REL+GA ++ S + +A+ +L L+ GE ++ Sbjct: 238 VLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGLAEIVLKDLIPGGEDAAPEITAT 297 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I A ++ + +DL R R +V RQ+AMYL + +T S P+IG +FG RDHTTV Sbjct: 298 AIMAATADYFGHTVDDLCGASRSRVLVTARQIAMYLCRELTDLSLPKIGAQFGGRDHTTV 357 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLIS 501 +HA RK+ ++ ++ +V L I Sbjct: 358 MHADRKIRALMAERRSIYNQVTELTNRIK 386 >gi|71083115|ref|YP_265834.1| chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1062] gi|71062228|gb|AAZ21231.1| Chromosomal replication initiator protein [Candidatus Pelagibacter ubique HTCC1062] Length = 444 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 165/458 (36%), Positives = 268/458 (58%), Gaps = 25/458 (5%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 +KN++G D+Y SW +++ F +++ V LSV T F++ WI +RYL+ I ++ + + Sbjct: 1 MKNKLGSDIYESWLRKIDFVEEMNSYVLLSVSTRFIRDWITSRYLDQILQIVKTYKKDLT 60 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 +E + +EK + + + N + S I + + + +D F Sbjct: 61 RIEFKI-------IEKNSENEIENNFTKNENNENVSFI-----KDTYLQYNRIDPNKRFD 108 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 FI G+SN++A A+ ++E SH NPL+I+ VG+GKTHLL +I + ++ Sbjct: 109 NFITGTSNKLAYEASMKVSENISH------YNPLYIYGGVGMGKTHLLNSIGLSLKEKN- 161 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLL 284 +V++++AE FM++F +I+ N + K+ RN D+LLIDD+QF+ GK +Q EF H Sbjct: 162 --KVMFISAERFMYQFVKSIKSNDMVKFKEYFRNTDILLIDDIQFMNGKEAMQEEFFHTF 219 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+LLD QV+ +ADR P++L + RI+SR GG+ V + DYE+R I+K + Sbjct: 220 NALLDKGSQVIISADRAPNKLSRIQDRIKSRFAGGLVVDIQKPDYELRSKIVKQKTEELN 279 Query: 345 KEDPK-LNINEEVLMHVARTVTTSGRELDGAFNQLV-FRHSFAPILTAEIADELLSHLVN 402 +NI+EE+ ++ +TTS REL GA N++V F + + +L L+N Sbjct: 280 IFYSNQVNISEEIQKFISTEITTSIRELVGAINRVVSFSRIYNKVPNLSEVKVVLKDLLN 339 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 GE K + I+ IQ V K + IS++++LS+RR R +VRPRQ A+YL+KI+T +S PEIGR Sbjct: 340 IGENK-VTIDLIQSTVCKFFKISKSEMLSSRRSRYLVRPRQTAIYLTKILTSKSLPEIGR 398 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 F +RDHTT++H+V+ +EK+ E D + + LK I Sbjct: 399 EFSNRDHTTIIHSVKTIEKLKEKDPEMTNNINNLKNQI 436 >gi|213622042|ref|ZP_03374825.1| chromosomal replication initiation protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 309 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 119/312 (38%), Positives = 186/312 (59%), Gaps = 8/312 (2%) Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL 251 NPLF++ GLGKTHLL A+ N + R+PN +VVY+ +E F+ A+++N Sbjct: 3 PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAIE 62 Query: 252 NLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDP 310 K R++D LLIDD+QF K Q EF H N+LL+ +Q++ +DR P E+ ++ Sbjct: 63 EFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEINGVED 122 Query: 311 RIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRE 370 R++SR G++V + + E R +IL + + ++ + + EV +A+ + ++ RE Sbjct: 123 RLKSRFGWGLTVAIEPPELETRVAIL-----MKKADENDIRLPGEVAFFIAKRLRSNVRE 177 Query: 371 LDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDL 429 L+GA N+++ +F +T + E L L+ K + I++IQ+ VA++Y I DL Sbjct: 178 LEGALNRVIANANFTGRAITIDFVREALRDLLALQ-EKLVTIDNIQKTVAEYYKIKIADL 236 Query: 430 LSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITL 489 LS RR R+V RPRQ+AM L+K +T S PEIG FG RDHTTVLHA RK+E++ E + Sbjct: 237 LSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREESHDI 296 Query: 490 KKEVELLKRLIS 501 K++ L R +S Sbjct: 297 KEDFSNLIRTLS 308 >gi|86154004|ref|ZP_01072206.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni HB93-13] gi|85842542|gb|EAQ59755.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni HB93-13] Length = 440 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 120/465 (25%), Positives = 232/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EAQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++IA D G NP+FI+ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAIAHKDKLG---KLYNPIFIYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|284041472|ref|YP_003391812.1| chromosomal replication initiator protein DnaA [Conexibacter woesei DSM 14684] gi|283945693|gb|ADB48437.1| chromosomal replication initiator protein DnaA [Conexibacter woesei DSM 14684] Length = 453 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 128/474 (27%), Positives = 212/474 (44%), Gaps = 30/474 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + E ++ + + L+ V Y W LK S+ +++ + P ++ W+ +R+ Sbjct: 1 MHTQLEHTWSQIQAELRRAVTDSTYHLWLAPLKARSLDGDVLMVGAPEE-IRTWVADRFA 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + S + + + +P+ P + Sbjct: 60 RVLQTCAAAVISPATTIVV------------------VPLDAPLPAEADARPAAPPPRPS 101 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 + ++ F F+ G NR+A AA ++AE+ Y NPLFI+ GLGKT Sbjct: 102 EAKADESFNPKYTFDQFVIGDGNRLAHAAALAVAELPGQAY-----NPLFIYGPPGLGKT 156 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AIAN + V Y T E F RF +A+R + K R+ D+LLIDD+QF Sbjct: 157 HLLHAIANYVRSYGDGMTVRYTTIEAFTNRFITALRSSSVEEFKRRYRDTDILLIDDVQF 216 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 LQ K + EF H N+L ++ Q+V DR P ++ +L R+R R + G+ + D Sbjct: 217 LQSKAKTEEEFFHTFNALYETGSQLVVTCDRMPRDMNALAERLRERFESGLVTDIRAPDL 276 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 R +IL+ R+ + + + + +A +TT+ R L GA ++V HS + Sbjct: 277 ATRMTILRKRVQHDGVQLA----SPDAIEPIADRITTNIRALQGALIRVVAFHSLTGRPI 332 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 + +L L ++ + +IQ + +S L S R V RQVAMYL Sbjct: 333 DRALVTHVLDGLYPGARPQQRTLAEIQEATCERLGVSPEALRSPDRSARVAWARQVAMYL 392 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 ++ +T + P IGR FG R+HTTV+HA R+ + + D + V L + + Sbjct: 393 ARELTDETLPAIGRAFGGRNHTTVMHACRRASERIAADAEAYELVRALTARLQQ 446 >gi|253754648|ref|YP_003027788.1| chromosomal replication initiator protein [Streptococcus suis BM407] gi|251817112|emb|CAZ54833.1| chromosomal replication initiator protein [Streptococcus suis BM407] Length = 444 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 137/458 (29%), Positives = 235/458 (51%), Gaps = 21/458 (4%) Query: 47 KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQG 106 K P +Y + K + + ++ + F K + + + E + E + Sbjct: 3 KVNFKPSIYDFYVADAKLLGINQQVANIFLNRPFKKDFWEKNFEELMIAASFESYGEPLT 62 Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 ++ E+ + + T+ S ++ + P ++T PV S + S++ F+ Sbjct: 63 IQYQ-----FTEDEQEIRNTTNTRSSIVHQVQTLEPA-TPQETFKPVH-SDIKSQYTFAN 115 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F++G +N A AA ++++ Y NPLFI GLGKTH+L AI N + P Sbjct: 116 FVQGDNNHWAKAAALAVSDNLGELY-----NPLFIFGGPGLGKTHILNAIGNKVLADNPQ 170 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLN 285 R+ Y+++E F+ F +R N + K + RN+DLLLIDD+Q L+ K Q EF H N Sbjct: 171 ARIKYVSSETFINEFLEHLRLNDMESFKKTYRNLDLLLIDDIQSLRNKATTQEEFFHTFN 230 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L + KQ+V +DR P L++L+ R+ +R + G++ + D+E R +IL+N+ Sbjct: 231 ALHEKNKQIVLTSDRNPDHLDNLEERLVTRFKWGLTSEITPPDFETRIAILRNKC----- 285 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQ--LVFRHSFAPILTAEIADELLSHLVNT 403 E+ N E L ++A ++ R+L+GA L+ ++ E+A E + T Sbjct: 286 ENLPYNFTNETLSYLAGQFDSNVRDLEGALKDIHLIATMRQLSEISVEVAAEAIRSRKQT 345 Query: 404 G-ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 + + IE IQ V Y +S +L ++RV+ +V RQVAM+L++ MT S P+IG+ Sbjct: 346 NPQNMVIPIEKIQTEVGNFYGVSLKELKGSKRVQHIVHARQVAMFLAREMTDNSLPKIGK 405 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 FG+RDHTTV+HA K++ +L D L+ E+ +K + Sbjct: 406 EFGNRDHTTVMHAYNKIKTLLLDDENLEIEITSIKNKL 443 >gi|291531951|emb|CBK97536.1| chromosomal replication initiator protein DnaA [Eubacterium siraeum 70/3] Length = 467 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 227/470 (48%), Gaps = 20/470 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E IF + RL + P W + LK + +N V L V + F K + + + Sbjct: 9 EEIFQEMKKRL--TLTPTAMKLWIEPLKPLKLNNNHVMLYVESQFSKDMTMANFKTVMEE 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 F + VEIL + S SP + K + Sbjct: 67 AFSDLFGFDVEVEILCSEDLTVEQKLKYGIESYADSSPKELQKELDDDDIVKTRLK---N 123 Query: 156 SPLDSRF--VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L S + F TFI G +N++A A +++ + S Y NPL+I++ GLGKTHLL Sbjct: 124 SELASNYQHTFDTFIVGDNNKLAYAACKAVVQEPSTRY-----NPLYIYSEPGLGKTHLL 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLKDSLRNIDLLLIDDMQFLQ 272 A+ + K P++ ++Y TA+ F + S +R K R+ DLLLIDD+QF+ Sbjct: 179 SAVKSEMEKLHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMA 238 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q E H NSL + KQ++ +DRPP EL ++ R+ SR + G+ + +YE Sbjct: 239 NKSETQQELFHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYET 298 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTA 390 R +I+K + E +N+ + ++ +A + T+ R+L+GA ++ T Sbjct: 299 RIAIIKR-----KAELYGMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTL 353 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A +++ + + E + +E I V K Y+++ D+ S +R + RQVA+Y+ Sbjct: 354 NMAQQVVRDIQSNHEPIPLTVEKIIAEVGKIYSVTPEDMRSQKRSSQISTARQVAIYVVN 413 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S+ IG FG+RDH+T+++A+ KV+ ++ D T K V+ + + + Sbjct: 414 RITGLSYSNIGVEFGNRDHSTIVYAINKVKSTIKKDPTFKGMVDDMIKNL 463 >gi|126640116|ref|YP_001083100.1| chromosomal replication initiation protein [Acinetobacter baumannii ATCC 17978] Length = 398 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 206/373 (55%), Gaps = 12/373 (3%) Query: 131 LSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 P P+ + L+ +F FS F+EG SN++A + + Sbjct: 35 PQPAKVKREPEPVANTAVSSKSSKKKLLNPQFTFSLFVEGRSNQMAAETCRKVLTQLG-- 92 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA 250 + NPLF++ GLGKTHL+QA+ NA ++ +PN RV+Y+T+E F+ F S+++ Sbjct: 93 --ASQHNPLFLYGPTGLGKTHLMQAVGNALLQAKPNARVMYMTSESFVQDFVSSLQKGKV 150 Query: 251 LNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLD 309 K + R++DLLL+DD+ L GK EF + N+LLD +KQ++ +DR P EL LD Sbjct: 151 EEFKKNCRSLDLLLVDDIHLLAGKEASLVEFFYTFNALLDESKQIILTSDRYPKELTELD 210 Query: 310 PRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGR 369 PR+ SR G+SV + D E R IL + + E+ +++ + +A+ V + R Sbjct: 211 PRLVSRFSWGLSVGVEPPDIETRIEIL-----LKKAENSGVDLPRNCALFIAQQVVANVR 265 Query: 370 ELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 EL+GA N++V F + ++ E L ++ + + +E+IQR+V++++ I + Sbjct: 266 ELEGALNKVVAISRFKGAPIDLDVVRESLKDVLAIR-ARTISVENIQRVVSEYFRIPLKE 324 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L+ +R R RPRQ+AM L++ +T SFPEIG FG RDH+TV+HA KV + E D Sbjct: 325 LIGPKRTRIYARPRQLAMGLARELTGDSFPEIGMAFGGRDHSTVMHACEKVVSLREEDPI 384 Query: 489 LKKEVELLKRLIS 501 ++ + L RL+ Sbjct: 385 FDEDYKNLLRLLQ 397 >gi|291558311|emb|CBL35428.1| chromosomal replication initiator protein DnaA [Eubacterium siraeum V10Sc8a] Length = 466 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 227/470 (48%), Gaps = 20/470 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E IF + RL + P W + LK + +N V L V + F K + + + Sbjct: 8 EEIFQEMKKRL--TLTPTAMKLWIEPLKPLKLNNNHVMLYVESQFSKDMTMANFKTVMEE 65 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 F + VEIL + S SP + K + Sbjct: 66 AFSDLLGFDVEVEILCSEDLTVEQKLKYGIESYADSSPKELQKELDDDDIVKTRLK---N 122 Query: 156 SPLDSRF--VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L S + F TFI G +N++A A +++ + S Y NPL+I++ GLGKTHLL Sbjct: 123 SELASNYQHTFDTFIVGDNNKLAYAACKAVVQEPSTRY-----NPLYIYSEPGLGKTHLL 177 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLKDSLRNIDLLLIDDMQFLQ 272 A+ + K P++ ++Y TA+ F + S +R K R+ DLLLIDD+QF+ Sbjct: 178 SAVKSEMEKLHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMA 237 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q E H NSL + KQ++ +DRPP EL ++ R+ SR + G+ + +YE Sbjct: 238 NKSETQQELFHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYET 297 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTA 390 R +I+K + E +N+ + ++ +A + T+ R+L+GA ++ T Sbjct: 298 RIAIIKR-----KAELYGMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTL 352 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A +++ + + E + +E I V K Y+++ D+ S +R + RQVA+Y+ Sbjct: 353 NMAQQVVRDIQSNHEPIPLTVEKIISEVGKIYSVTPEDMRSQKRSSQISTARQVAIYVVN 412 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S+ IG FG+RDH+T+++A+ KV+ ++ D T K V+ + + + Sbjct: 413 RITGLSYSNIGVEFGNRDHSTIVYAINKVKSTIKKDPTFKGMVDDMIKNL 462 >gi|313682853|ref|YP_004060591.1| chromosomal replication initiator protein dnaa [Sulfuricurvum kujiense DSM 16994] gi|313155713|gb|ADR34391.1| chromosomal replication initiator protein DnaA [Sulfuricurvum kujiense DSM 16994] Length = 443 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 236/475 (49%), Gaps = 38/475 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNR 88 ++ SI ++ L+ +V P + + ++LK++ + V P + WI+++ Sbjct: 1 MDKKNVSIGELIIEELEKRVNPIDFKRYIKQLKYNEALSKPHSVVFDTPNALIANWIQSK 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + E I LF+ KT P+I+ + + S + Sbjct: 61 HAELIATLFEI---------------------KTNIKPAISFRISDDEVLLTSFMESSNA 99 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + + GSPL+ + F FI G SN A AA ++ Y NPLFIH VGLG Sbjct: 100 SKTATIGSPLNPLYTFDNFIVGGSNEFAYRAAIMASKKPGIVY-----NPLFIHGGVGLG 154 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+ A+ N V+Y + E F+ F+ +R K+ R DLLLIDD+ Sbjct: 155 KTHLMHAVGNVLK--DYGKEVIYTSVENFLNDFSRYLRIGEMEQFKNKYRKCDLLLIDDV 212 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QFL GK +Q EF H +L + +Q++ +D+ P +++ ++ R+ SR + G+ + Sbjct: 213 QFLSGKVKVQEEFFHTFEALKNENRQIIITSDQHPKKIKGIEKRLISRFEWGLVADIQSP 272 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 + E + I+K + I++ ++ + +++ ++A + + RE++G +L I Sbjct: 273 ELETKLEIIKKKCEINR-----VSFSNDIIQYIATIIENNTREIEGIITKLNAYSQLMGI 327 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + E A ++ + + +T ++ I+ I +VAK N+ ++++ SN R VV R++A+ Sbjct: 328 EVDLEFARSVMKNQIEEKKT-EITIDSILELVAKELNVKQSEMRSNNRTVPVVHARRIAI 386 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YLS+ +TP S P++ FG +DHT V H ++K++ M+E D K +++ + IS Sbjct: 387 YLSRTLTPNSMPQLASYFGLKDHTAVSHTMKKIKDMMENDDDFKLKIDEMINKIS 441 >gi|167751447|ref|ZP_02423574.1| hypothetical protein EUBSIR_02443 [Eubacterium siraeum DSM 15702] gi|167655693|gb|EDR99822.1| hypothetical protein EUBSIR_02443 [Eubacterium siraeum DSM 15702] Length = 467 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 134/470 (28%), Positives = 227/470 (48%), Gaps = 20/470 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E IF + RL + P W + LK + +N V L V + F K + + + Sbjct: 9 EEIFQEMKKRL--TLTPTAMKLWIEPLKPLKLNNNHVMLYVESQFSKDMTMANFKTVMEE 66 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 F + VEIL + S SP + K + Sbjct: 67 AFSDLLGFDVEVEILCSEDLTVEQKLKYGIESYADSSPKELQKELDDDDIVKTRLK---N 123 Query: 156 SPLDSRF--VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 S L S + F TFI G +N++A A +++ + S Y NPL+I++ GLGKTHLL Sbjct: 124 SELASNYQHTFDTFIVGDNNKLAYAACKAVVQEPSTRY-----NPLYIYSEPGLGKTHLL 178 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA-LNLKDSLRNIDLLLIDDMQFLQ 272 A+ + K P++ ++Y TA+ F + S +R K R+ DLLLIDD+QF+ Sbjct: 179 SAVKSEMEKLHPDMNIIYTTADTFTDDYVSNLRTKSNLEAFKQKYRSCDLLLIDDIQFMA 238 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K Q E H NSL + KQ++ +DRPP EL ++ R+ SR + G+ + +YE Sbjct: 239 NKSETQQELFHTFNSLYNQNKQIIFTSDRPPKELNGIEQRLISRFEQGLLADIAPPEYET 298 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTA 390 R +I+K + E +N+ + ++ +A + T+ R+L+GA ++ T Sbjct: 299 RIAIIKR-----KAELYGMNLPDSIVDFLADKLKTNIRQLEGAITKINALTLVTGSTPTL 353 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +A +++ + + E + +E I V K Y+++ D+ S +R + RQVA+Y+ Sbjct: 354 NMAQQVVRDIQSNHEPIPLTVEKIIAEVGKIYSVTPEDMRSQKRSSQISTARQVAIYVVN 413 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +T S+ IG FG+RDH+T+++A+ KV+ ++ D T K V+ + + + Sbjct: 414 RITGLSYSNIGVEFGNRDHSTIVYAINKVKSTIKKDPTFKGMVDDMIKNL 463 >gi|86150555|ref|ZP_01068779.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni CF93-6] gi|85839007|gb|EAQ56272.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni CF93-6] Length = 440 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 232/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++IA D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAIAHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|329768086|ref|ZP_08259595.1| chromosomal replication initiator protein DnaA [Gemella haemolysans M341] gi|328838241|gb|EGF87853.1| chromosomal replication initiator protein DnaA [Gemella haemolysans M341] Length = 494 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 130/503 (25%), Positives = 238/503 (47%), Gaps = 46/503 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWF--QRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N ++ I+ LK+ V P V+ +WF + + + ++ + +I++ Y + Sbjct: 3 NSNFLWEIILRELKSTVDPHVFDTWFSSASIDNVDFMKKSIVITSKEALISQFIQSAYDQ 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT-- 149 + ++ ++ +E LP + + I N + G Q Sbjct: 63 KLKEILKKNTGFDFNIEYTSLDNGLPLITPHVEDEKPAAENLIRQNFLQGDKPSGAQHFY 122 Query: 150 -------------------ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 I+ L+ + F F+ G N A ++A Sbjct: 123 QKQTFPLEDYKKPEPNKNIIASKKNPTLNKNYTFENFVVGEGNAFTHNIAWNVAVSPGGI 182 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR---- 246 Y NPLFI+ VGLGKTHLL AI N P+ ++ +++E F+ F ++I+ Sbjct: 183 Y-----NPLFIYGGVGLGKTHLLHAIGNEMEANFPDFKIECISSEKFLNEFLASIKPMKD 237 Query: 247 ----DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 N + + R++D LLIDD+QFL GK Q+ F H N L + KQ+V +DR Sbjct: 238 KNNYTNADEDFRRKYRDVDALLIDDIQFLSGKTETQNAFFHTFNELQMNQKQIVLISDRS 297 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 PS+L L+ R+ +R G++ + D+E R +I+K + E + ++EE L +++ Sbjct: 298 PSQLNDLEDRLVTRFSQGITADITPPDFETRMAIIK-----FKCEQFDIKLDEETLTYIS 352 Query: 362 RTVTTSGRELDGAFNQLVFRH-SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 V+++ REL+G ++ F S + IA+E+L T K + ++I + A Sbjct: 353 SNVSSNIRELEGVLKRIKFTATSKHEQPSLSIAEEILKS-AKTSPRKNISPDNIINVCAD 411 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 Y I +D+LS+ R + VV+ R +A+YL + +T SFP IG F ++DHT++L++ K+ Sbjct: 412 FYKIKVDDILSSSRKKEVVQVRNIAIYLCRELTTLSFPSIGDCF-NKDHTSILYSFNKIA 470 Query: 481 KMLE-TDITLKKEVELLKRLISE 502 K+ + + + +++E++K + + Sbjct: 471 KLSKDENPEIFEDIEVIKERLGK 493 >gi|187250425|ref|YP_001874907.1| DNA replication initiation ATPase [Elusimicrobium minutum Pei191] gi|226735810|sp|B2KAM4|DNAA_ELUMP RecName: Full=Chromosomal replication initiator protein DnaA gi|186970585|gb|ACC97570.1| ATPase involved in DNA replication initiation [Elusimicrobium minutum Pei191] Length = 452 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 130/473 (27%), Positives = 237/473 (50%), Gaps = 31/473 (6%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 + E + + ++ G + +W + L S+ ++I+ +++P F I ++Y++ Sbjct: 3 NIINEDLKNRILKEMETVFGVEACETWLKPLSL-SLKNDILTVTLPNKFWSKTIADKYVQ 61 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + ++E ++ V + +P ++ Sbjct: 62 EVKSSIEKEQGGDIQIKYDV----------------LEDTTPYKRPEIPPQVMGANYNAK 105 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 F S L+ + F FIEG SNR A AA+++ + NPL I+++ GLGKTH Sbjct: 106 IPFPSRLNPNYTFEGFIEGPSNRFAYRAAEAVVKKLGEREN----NPLVIYSTPGLGKTH 161 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LL AI N +K P +++Y++ E F+ + ++++ + R++D L+DD+QF+ Sbjct: 162 LLHAIGNRILKENPYAKILYMSGEEFVSEYIESLQNRNPEAFRKKHRSLDCFLMDDIQFV 221 Query: 272 QGKLIQ-HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK EF + N+L +S KQ+V +DR P +L +DPR+ SRL G+ + D E Sbjct: 222 AGKESSVQEFFYTFNALFESKKQIVLTSDRTPQQL-GIDPRLSSRLLSGIVSEIKRPDLE 280 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL-T 389 R +IL+ +++ ++ ++V+ +A V S REL+G +L + + T Sbjct: 281 TRIAILRQ-----KRDTSNFDVGDDVIAFIAEGVQASIRELEGCLFRLTTYCNIHGVTPT 335 Query: 390 AEIADELLSHLVNTGETK-KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 IA E+LS +++ E + + I+++V+KH+ I D S R+ ++ PRQ+AMYL Sbjct: 336 IPIAREVLSDIISMEEKRLLINPNSIKKVVSKHFKIDIIDFNSKRKNHSIAWPRQIAMYL 395 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T S PEIGR F +RDH+TV+HA K+++ +E D ++ + I Sbjct: 396 ATELTDMSLPEIGREF-ERDHSTVVHAREKIKEEIENDPFFAAQINQIISDIK 447 >gi|224437107|ref|ZP_03658088.1| chromosomal replication initiation protein [Helicobacter cinaedi CCUG 18818] gi|313143577|ref|ZP_07805770.1| chromosomal replication initiator protein dnaA [Helicobacter cinaedi CCUG 18818] gi|313128608|gb|EFR46225.1| chromosomal replication initiator protein dnaA [Helicobacter cinaedi CCUG 18818] Length = 443 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 133/467 (28%), Positives = 233/467 (49%), Gaps = 36/467 (7%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + +LKN++ Y+S+ +++ ++ VP F+ WIK+ YLE+I F Sbjct: 4 DNILKKLKNKLSDLEYSSYISLMEYDESASRTDLEVFYVPNIFVANWIKSNYLESIADAF 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 EE+ EI +R K+ N +K P + +S Sbjct: 64 MEENPNGIRPEIHIRVKEKNQNVKS-------------LNFNKIPTHFQQNLLS------ 104 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ G SN A T A+ +A + Y NP+ + GLGKTHLL AI Sbjct: 105 LNPFYTFENFVVGKSNEHAHTIAKVVARQQALAY-----NPVLFYGKSGLGKTHLLHAIG 159 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N ++ N V+Y TAE + F S IR + ++ R D LLIDD+QFL + + Sbjct: 160 NVVKEQNKN--VLYTTAEELLNDFISKIRRGTMDSFREKYRKCDYLLIDDVQFLGNREGV 217 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E + N+L + KQ+V +D+PP E++ L+ R+RSR +GGV + + E + SI+ Sbjct: 218 QEELLNTFNALYSTQKQIVMTSDKPPKEIKGLEDRLRSRFEGGVMAEITNPELETKISII 277 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT-AEIADE 395 + + I++ +N ++EV+ ++A + + R+++G + + S +P ++A Sbjct: 278 ELKCQINR-----INFDKEVIDYIASNIYGNIRQIEGILSTINTHMSLSPEANALKVAKN 332 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L + + + +++I ++V K NI +++LS R R V R+V +YL++ +T Sbjct: 333 VLKNY-QNERLEGVTLDNIIKLVGKELNIKPSEILSKERSRKVAFARRVVIYLARALTIN 391 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S P I + +DH++V A++ +E + TD K +E LK I + Sbjct: 392 SMPMIAKELNMKDHSSVSKALKAIESEIATDSATKGIIEELKSKIQQ 438 >gi|88597701|ref|ZP_01100934.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 84-25] gi|218561694|ref|YP_002343473.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14194686|sp|Q9PJB0|DNAA_CAMJE RecName: Full=Chromosomal replication initiator protein DnaA gi|88190005|gb|EAQ93981.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 84-25] gi|112359400|emb|CAL34182.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315930328|gb|EFV09416.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 305] Length = 440 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 232/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++IA D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAIAHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKI 434 >gi|149198967|ref|ZP_01876008.1| chromosomal replication initiation protein [Lentisphaera araneosa HTCC2155] gi|149137962|gb|EDM26374.1| chromosomal replication initiation protein [Lentisphaera araneosa HTCC2155] Length = 470 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 140/480 (29%), Positives = 237/480 (49%), Gaps = 23/480 (4%) Query: 31 LE-VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVP---TNFLKAWIK 86 +E + C++++ I+ + ++ + +FQ +S+ F+ I+ Sbjct: 1 METIECQAVWDILYPVISARISSPGFNKFFQESFASIDESGTFKISLNKGYNVFI-DHIR 59 Query: 87 NRYLETITKLFQEEH----SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSP 142 + YL + + +E +I+ + I L PI + Sbjct: 60 DNYLNLLRESLKECKHDLPEQIKDISIDALGQGEALYTVEGQKEDKISLKPIIDKTRRRS 119 Query: 143 IILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 K+ +P P R+ F F+ G SNR+A +++++E NPLFI+ Sbjct: 120 TETPKELKAPN-NFPSSDRYSFKNFVVGDSNRLAFATSKAVSESPG-----FSFNPLFIY 173 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDL 262 S GLGK+HLL AIA ++ P R+ YL+AE F F +I++ N + RN+D+ Sbjct: 174 GSSGLGKSHLLHAIAQETLSHNPYHRIEYLSAEEFSNIFIDSIKNQDGHNFRKRFRNVDI 233 Query: 263 LLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVS 321 LL+DD+QFL+ K Q EF H N+L KQ+V +D P EL+ L+ R+ SR + G Sbjct: 234 LLLDDVQFLKNKTKTQEEFFHTFNALYSLNKQIVLTSDCQPHELDGLEKRLVSRFEHGQI 293 Query: 322 VPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFR 381 V + ++E R +IL+ +++ ++I EVL +A + + R+L+GA +LV Sbjct: 294 VDVLKPEFETRVAILR-----LKRDSMNVHIPNEVLDFIASNIKSHIRKLEGALVRLVTY 348 Query: 382 HS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + +A E+L + + + I I R VA+++++ D+L +R +++V Sbjct: 349 ASTMGYEVNVSLAREVLGGQLENTSDRNLDITVILRQVAEYFDVGIKDILGKKRTQSIVT 408 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 PRQVAMYLS+ +T SFP I +F R H TVLH+ V + +E D K +V LK+ + Sbjct: 409 PRQVAMYLSRNLTEESFPTIADQF-RRTHATVLHSCNAVNEQMELDQDFKDKVFFLKKRL 467 >gi|28492968|ref|NP_787129.1| chromosomal replication initiator protein [Tropheryma whipplei str. Twist] gi|28572176|ref|NP_788956.1| chromosomal replication initiator protein DnaA [Tropheryma whipplei TW08/27] gi|61212757|sp|Q83N52|DNAA_TROWT RecName: Full=Chromosomal replication initiator protein DnaA gi|61212759|sp|Q83NZ5|DNAA_TROW8 RecName: Full=Chromosomal replication initiator protein DnaA gi|28410307|emb|CAD66693.1| chromosomal replication initiator protein DnaA [Tropheryma whipplei TW08/27] gi|28476008|gb|AAO44098.1| chromosomal replication initiator protein [Tropheryma whipplei str. Twist] Length = 478 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 131/485 (27%), Positives = 232/485 (47%), Gaps = 31/485 (6%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNF------------ 80 +N + ++ L+ + ++ S+ + ++ P + Sbjct: 5 LNPQEVWIKAVRNLEGFFSSPRVIGYLKKASP-SIEGESLIITFPNSHLASVMDDIEVYD 63 Query: 81 -LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNI- 138 K I + Y +I ++ + EI L + I P+ N Sbjct: 64 ATKKTILDSY-PSIKEIKITISPDVLEKEITEEINDLVQSMEEEDFALIDHTKPVIPNFF 122 Query: 139 -SKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLN 197 + + G + + ++ RF F F+ G SN +A A+ S AE N Sbjct: 123 DQNTRVNFGGGPNNHHPTTGVNPRFTFDNFVVGKSNELARAASISAAERPGKS-----FN 177 Query: 198 PLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL 257 PLFI+ G+GKTHLL +I N + P+LR+ Y+++E F F ++I + ++ Sbjct: 178 PLFIYGDSGVGKTHLLHSIGNYAKFLFPSLRIKYVSSEDFTNDFINSISSGTSQKFQEKY 237 Query: 258 RNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 R ID+L++DD+QFLQ K Q F H NSL +S++Q+V ++D PP +L + R+RSR Sbjct: 238 RQIDILMVDDIQFLQKKQETQESFFHTFNSLHNSSRQLVISSDLPPKQLMGFEDRMRSRF 297 Query: 317 QGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFN 376 + G+ + D E R +IL+ + +KE ++ E+L ++A ++S REL+GA Sbjct: 298 ECGLVCDIQKPDLETRIAILQKKCQNEKKE-----VSMEILTYIASCFSSSVRELEGALL 352 Query: 377 QLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRV 435 ++ SF + +A ++L L K+ +I + AKHY+++ +DL N RV Sbjct: 353 RIFALASFNKEEINMTLAQKVLEDL-GAQRGDKIDPIEIIEITAKHYDLAASDLCGNSRV 411 Query: 436 RTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVEL 495 + RQ+AMYL + +T S P++G FG RDH+T+++A R++ ++ D ++ Sbjct: 412 ANISIARQIAMYLCRELTDVSLPKLGYIFG-RDHSTIIYATRRISDLIGKDRKTFSDIYK 470 Query: 496 LKRLI 500 L + I Sbjct: 471 LTQFI 475 >gi|187918302|ref|YP_001883865.1| chromosomal replication initiator protein DnaA [Borrelia hermsii DAH] gi|226735782|sp|B2S0D9|DNAA_BORHD RecName: Full=Chromosomal replication initiator protein DnaA gi|119861150|gb|AAX16945.1| chromosomal replication initiator protein DnaA [Borrelia hermsii DAH] Length = 484 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 130/489 (26%), Positives = 246/489 (50%), Gaps = 32/489 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++I++++ + ++ ++ + + WF+ L F + +S P +F K ++ R+ + I + Sbjct: 5 KNIWSLILAAIRKELSEEEFYIWFENLYFIDATDENIKISAPNSFHKNQVEKRFAKRIKE 64 Query: 96 LFQEEHSRIQGVEIL------------VRSVALPSVEKTASSPSITKLSPINTN--ISKS 141 + E+ VE + ++++L + SP I+T I + Sbjct: 65 ILIEKGHNTINVEFINSPNDSKTHNMESKNISLKDISTQQDSPEKRTTFKIHTKNIIEST 124 Query: 142 PIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 K+ I + +P L ++ F FI G +N++A A+ SIA+ Y NP Sbjct: 125 KQYTTKEEIHTKYRNPFLKKKYTFENFITGPNNKLAYNASLSIAKNPGKKY-----NPCL 179 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHLLQ+I N + + +++Y+TAE F+ F +I+ N K R + Sbjct: 180 IYGGVGLGKTHLLQSIGNKTEELHKEFKILYVTAENFLNEFVESIKTNETKRFKKKYRYL 239 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LL+DD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR G Sbjct: 240 DMLLLDDIHDLQKKEGIQEELFHTFNALYEDNKQMVFTCDRQPSELINFTDRLKSRFTRG 299 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A +L Sbjct: 300 LNVDISKPNFELRVAIIEK-----KAEEDGIKVPKSILNLVAKKVTTNIRDLEAAVTKLK 354 Query: 380 FRHSFAPI-LTAEIADELLSHLV-----NTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 I + D+++ ++ NT K+ IE I++++ + ++ D+ N Sbjct: 355 AHIDLEDIEIDTSTVDKIIKEIIVYENDNTNTHNKINIESIKKVILRELKLTNKDIEGNS 414 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + + + R + YL + T S EIG+ G + H+TVL+++ K++K D+ + + Sbjct: 415 KKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDKERNNDLEINNLI 474 Query: 494 ELLKRLISE 502 L I++ Sbjct: 475 IELMNKINK 483 >gi|227496605|ref|ZP_03926883.1| chromosomal replication initiator protein DnaA [Actinomyces urogenitalis DSM 15434] gi|226833885|gb|EEH66268.1| chromosomal replication initiator protein DnaA [Actinomyces urogenitalis DSM 15434] Length = 525 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 130/390 (33%), Positives = 200/390 (51%), Gaps = 12/390 (3%) Query: 115 ALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNR 174 AL P+ S + V S L+ R+ F+T+++G SNR Sbjct: 139 ALSPDGPGEDHPAPATPSSSTGYVPPLHPTATLPAAEVVDDSRLNPRYTFATYVQGKSNR 198 Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTA 234 +A TAA ++AE S Y NPLFI+ GLGKTHLL AI + + K P + V Y+ + Sbjct: 199 LARTAAAAVAEAPSRAY-----NPLFIYGGSGLGKTHLLHAIGHYARKLYPGITVKYVNS 253 Query: 235 EYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQ 293 E F+ F +++ D N KD RN+D+LL+DD+QF +GK EF H N+L + KQ Sbjct: 254 EEFVSDFIASVADGQMRNFKDRYRNVDILLVDDVQFFEGKEQTLEEFFHTFNALRIAEKQ 313 Query: 294 VVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNIN 353 +V +D+P EL+ + R+ SR Q G+ + D E R +IL + +++ Sbjct: 314 IVLTSDQPALELKGFNNRLISRFQEGLVADVQPPDLETRQAIL-----TLKARADGISVT 368 Query: 354 EEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIE 412 E+VL ++A VTT+ REL+GA ++ S + +A+ L ++ +++ Sbjct: 369 EDVLEYIASRVTTNIRELEGALVRVTAFASLNKQPIDRTLAEVALKDVITDPTGEEITSG 428 Query: 413 DIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 I VA +++++ +DL R + V PR +AMYL + +T S P IGR FG RDHTTV Sbjct: 429 LIMGQVADYFDMTIDDLCGESRRKNFVHPRHIAMYLCRELTELSLPNIGREFGGRDHTTV 488 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLISE 502 + A RK+ + EV L I + Sbjct: 489 MSAHRKITTQMGERRETFNEVNELTSRIKQ 518 >gi|153951168|ref|YP_001397274.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. doylei 269.97] gi|166201873|sp|A7H194|DNAA_CAMJD RecName: Full=Chromosomal replication initiator protein DnaA gi|152938614|gb|ABS43355.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. doylei 269.97] Length = 440 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 232/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSTKQSNKSTKIDIAHIQAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++IA D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAIAHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARTLTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDTSLKAKIEELKNKI 434 >gi|284925304|gb|ADC27656.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni IA3902] Length = 440 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 232/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++IA D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAIAHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|305432571|ref|ZP_07401732.1| ATPase [Campylobacter coli JV20] gi|304444282|gb|EFM36934.1| ATPase [Campylobacter coli JV20] Length = 440 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 122/465 (26%), Positives = 232/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETITKLF 97 + LK ++ + Y ++ LKF+ L P L +I+ +Y + I+ + Sbjct: 4 NQILENLKKELSENEYENYIAILKFNEKQSKADFLVFNAPNELLAKFIQTKYGKKISHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + V I +S S I S I Sbjct: 64 EVQSGNKASVLIQAQSQKHSSKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I++ D G NP+FI+ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAISQKDKLG---KLYNPIFIYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYANILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + IEDI ++ K +NI +D+ S+++ + VV R++A+YL++ +T Sbjct: 331 VMKDHIKEK-KENISIEDILSLICKEFNIKPSDVKSSKKTQNVVTARRIAIYLARELTSL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +F ++ F +DHT + H+V+K+++++E D +K ++E LK I Sbjct: 390 TFSQLANFFVMKDHTAISHSVKKIKELMEDDEQIKTKIEELKNKI 434 >gi|284988630|ref|YP_003407184.1| chromosomal replication initiator protein DnaA [Geodermatophilus obscurus DSM 43160] gi|284061875|gb|ADB72813.1| chromosomal replication initiator protein DnaA [Geodermatophilus obscurus DSM 43160] Length = 584 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 121/398 (30%), Positives = 204/398 (51%), Gaps = 12/398 (3%) Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 GV +L + + + PS + P+ ++ + L+ ++VF Sbjct: 192 GVAVLPFDLDAGDAPEPPAPPSRGRRGGSRGGGDAVPLFGDRRAPTGAQDPGLNPKYVFD 251 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +F+ G+SNR A V NPLFI+ GLGKTHLL AI + + + P Sbjct: 252 SFVIGNSNRF-----AHAAAVAVAEAPARAYNPLFIYGDSGLGKTHLLHAIGHYAARMFP 306 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ-GKLIQHEFCHLL 284 N+RV Y++ E F F + + A + + R+ID LLIDD+QFL+ + Q EF H Sbjct: 307 NVRVRYVSTEEFTNEFINLVHSGRAEDFRRRYRDIDFLLIDDIQFLERAERTQEEFFHTF 366 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L +++KQ+V +DR P +L +L+ R+R+R + G+ + D E R +IL+ + Sbjct: 367 NTLHNASKQIVITSDRAPKKLTTLEDRLRTRFEWGLITDVQAPDLETRIAILRK-----K 421 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNT 403 +L + + VL +A V T+ REL+GA ++ S + +A+ +L L++ Sbjct: 422 AYGERLQVPDPVLEFIASKVQTNIRELEGALIRVTAFASLNKQQVDLPLAELVLKDLISD 481 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + ++ I A++++++ +L + R RT+V RQ+AMYL + +T S P IG Sbjct: 482 EQGPQITAAIIMAATAEYFSVTMEELQGSNRSRTLVNARQIAMYLCRELTELSLPRIGAS 541 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 FG +DHTTV+HAV+K+ ++ +V L I Sbjct: 542 FGGKDHTTVMHAVKKITNLMSERRATYTQVTELTARIK 579 Score = 56.6 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 2/120 (1%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 V+ +++ + RL + P + + V + LS P F + +++R Sbjct: 6 VDLATVWDQIRERLATSLSPQQ-NAMLNLTRPVGVFEDTAVLSAPNEFTQTVLESRMRRV 64 Query: 93 ITKLFQEEHSRIQGVEILVR-SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + E R V + V S A P T P+ S + ++ +T Sbjct: 65 LAEALSEHLGRDIRVAVQVEDSPAPPPAAPTPEVPTRRPWSVVEAQRAQEDRETRDRTDD 124 >gi|332524901|ref|ZP_08401087.1| chromosomal replication initiation protein [Rubrivivax benzoatilyticus JA2] gi|332108196|gb|EGJ09420.1| chromosomal replication initiation protein [Rubrivivax benzoatilyticus JA2] Length = 349 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 121/346 (34%), Positives = 190/346 (54%), Gaps = 13/346 (3%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F T + G +N++A TAA +A Y NPLFI+ VGLGKTHL+ A+ Sbjct: 14 LNPSLTFDTLVPGRANQMARTAALHVAGAPGQMY-----NPLFIYGGVGLGKTHLVHAVG 68 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NA +K +P+ RV+YL AE F+ + LK ++DLLLIDD+QF GK Sbjct: 69 NALLKDRPDARVLYLHAEQFISDVVKNYQRKTFDELKAKYHSLDLLLIDDVQFFAGKDRT 128 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q F + +LL ++ +D P L +D R+ SR G++V + + EMR +IL Sbjct: 129 QEVFFNTFEALLAKRAHIIMTSDTYPKGLVDIDERLTSRFDAGLTVAIEPPELEMRVAIL 188 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADE 395 + E + E+V +A+ V + REL+GA +++ F+ + + + Sbjct: 189 IKKALAEGAE-----MPEDVAFFIAKNVRANVRELEGALRKVLAYSRFSQKDINIALTRD 243 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L L++ +++ +E+I + VA Y I D+ S +R ++ RPRQ+AMYL+K MT + Sbjct: 244 ALKDLLSIQ-NRQISVENILKTVADFYKIKVADMYSKKRPASIARPRQIAMYLAKDMTKK 302 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S PEIG FG RDHTTVLHAVRK+ + + L +++ +L++ + Sbjct: 303 SLPEIGELFGGRDHTTVLHAVRKIADERQRNSELNQQLHVLEQTLK 348 >gi|213966256|ref|ZP_03394440.1| chromosomal replication initiator protein DnaA [Corynebacterium amycolatum SK46] gi|213951108|gb|EEB62506.1| chromosomal replication initiator protein DnaA [Corynebacterium amycolatum SK46] Length = 582 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 134/395 (33%), Positives = 207/395 (52%), Gaps = 16/395 (4%) Query: 111 VRSVALPSVEKTASSP-SITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 V S+A +A +P +I + + + P L+ + F TF+ Sbjct: 195 VDSMAQGLSHSSAENPMTIADQRQVTSPFRSESHGTPTEMSMPFEEPTLNPNYTFETFVI 254 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 G N+ A AA ++AE Y NPLFI GLGKTHLL I + + PNLRV Sbjct: 255 GPQNKFAAAAAVAVAESPGRTY-----NPLFISGGSGLGKTHLLHGIGHYAKHLYPNLRV 309 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLL 288 Y+++E F F +++RD+ + K R++D+L+IDD+QFL+GK Q EF H N+L Sbjct: 310 RYVSSEEFTNDFINSVRDDAQESFKRRYRDLDMLIIDDIQFLEGKEGTQEEFFHTFNALH 369 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 S Q+V ++DRPP EL++L+ R+R+R Q G++ L D E R +IL + + Sbjct: 370 QSNHQIVLSSDRPPRELKTLEDRLRTRFQWGLNPDLQYPDLETRIAILSK-----KAQLS 424 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 L + VL ++A ++S REL+G Q+ S +T + A E+L Sbjct: 425 DLAVPHNVLQYIAENTSSSIRELEGRLLQISAHASMIHEPVTLKFAQEILG---ADEIEV 481 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ E I A++++++ DL+ + R V RQ+AMYL++ T S P IGR FG+R Sbjct: 482 QITPEIIISTTAEYFDLTVADLVGPGKTRPVAHARQIAMYLTRSFTELSLPSIGREFGNR 541 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 DH+TVLHA RK+ K ++ K +V L I + Sbjct: 542 DHSTVLHAERKIVKEIQEKKPSKDQVNDLTTRIRD 576 >gi|241889156|ref|ZP_04776460.1| chromosomal replication initiator protein DnaA [Gemella haemolysans ATCC 10379] gi|241864405|gb|EER68783.1| chromosomal replication initiator protein DnaA [Gemella haemolysans ATCC 10379] Length = 494 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 128/503 (25%), Positives = 236/503 (46%), Gaps = 46/503 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWF--QRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N ++ I+ LK+ V P V+ +WF + + + ++ + +I+ Y + Sbjct: 3 NSNFLWEIILRELKSTVDPHVFDTWFSGASIDNVDFMKKSIVITSKEALISQFIQGAYDQ 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + ++ ++ ++ +P + + I N + G Q Sbjct: 63 KLKEILKKNTGFDFNIDYTSLDTDIPLITPQVFDEKPAAENLIRQNFLQGDKPSGAQHFY 122 Query: 152 PVFGSPL---------------------DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHG 190 PL + + F F+ G N A ++A Sbjct: 123 QKQTFPLEDYKHPVPNKNITASKKNPTLNKNYTFENFVVGEGNAFTHNIAWNVAVSPGGI 182 Query: 191 YTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR---- 246 Y NPLFI+ VGLGKTHLL AI N P+ ++ +++E F+ F ++I+ Sbjct: 183 Y-----NPLFIYGGVGLGKTHLLHAIGNEMEANFPDFKIECISSEKFLNEFLASIKPMKD 237 Query: 247 ----DNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRP 301 N + + R++D LLIDD+QFL GK Q+ F H N L + KQ+V +DR Sbjct: 238 KNNYTNADEDFRRKYRDVDALLIDDIQFLSGKTETQNAFFHTFNELQMNQKQIVLISDRS 297 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVA 361 PS+L L+ R+ +R G++ + D+E R +I+K + E + ++EE L +++ Sbjct: 298 PSQLNDLEDRLVTRFSQGITADITPPDFETRMAIIK-----FKCEQFDIKLDEETLTYIS 352 Query: 362 RTVTTSGRELDGAFNQLVFRH-SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 V+++ REL+G ++ F S + IA+E+L T K + ++I + A Sbjct: 353 SNVSSNIRELEGVLKRIKFTATSKHEQPSLSIAEEILKS-AKTSPRKNISPDNIINVCAD 411 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 Y I +D+LS+ R + VV+ R +A+YL + +T SFP IG F ++DHT++L++ K+ Sbjct: 412 FYKIKVDDILSSSRKKEVVQVRNIAIYLCRELTTLSFPSIGDCF-NKDHTSILYSFNKIA 470 Query: 481 KMLE-TDITLKKEVELLKRLISE 502 K+ + + + +++E++K + + Sbjct: 471 KLSKDENPEIFEDIEVIKERLGK 493 >gi|57236915|ref|YP_178030.1| chromosomal replication initiation protein [Campylobacter jejuni RM1221] gi|71151795|sp|Q5HXF5|DNAA_CAMJR RecName: Full=Chromosomal replication initiator protein DnaA gi|57165719|gb|AAW34498.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni RM1221] Length = 440 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 118/465 (25%), Positives = 231/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFDSFVVGDSNKYAYGACKAITHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|315057442|gb|ADT71771.1| Chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni S3] Length = 440 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 118/465 (25%), Positives = 231/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFDSFVVGDSNKYAYGACKAITHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDSSLKAKIEELKNKI 434 >gi|188995956|ref|YP_001930207.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium sp. YO3AOP1] gi|188931023|gb|ACD65653.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium sp. YO3AOP1] Length = 459 Score = 375 bits (963), Expect = e-101, Method: Composition-based stats. Identities = 133/482 (27%), Positives = 232/482 (48%), Gaps = 31/482 (6%) Query: 21 TPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNF 80 + N + + ++ ++ + L+ ++ Y L+ +++ P N Sbjct: 4 SKNNAGNTSNVSISESKLWQSILHDLREKIDNTSY-MILNSLEEVYYNEGNIYIYTPDNI 62 Query: 81 LKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 K WI+ LE I + R + ++ K + + + +S Sbjct: 63 YKNWIETEILENIETSANKVIGRNVKIHVISLKDKSSKKTKKGKNSKNFEETDFYQYLS- 121 Query: 141 SPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 L+ ++ F I G++N+VA A ++ E Y NPLF Sbjct: 122 -----------------LNPKYTFDNLIVGNNNKVAFQACLAVTENLGKIY-----NPLF 159 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHLL A + + + +++Y TA+ F S + L + R + Sbjct: 160 IYGDVGLGKTHLLHGTAYHVLAKSSSAKIIYTTADTFASELFSYLEKGMILEFRKKYREV 219 Query: 261 DLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 DLLLIDD+QFL GK Q EF H+ N L KQ++ ++D+PPS+L ++ R+ SR G Sbjct: 220 DLLLIDDIQFLVGKERTQIEFYHIFNVLYSLGKQIILSSDQPPSKLNGIEKRLISRFSSG 279 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 + V + D E + +I + + ++ + + +V++ +A+TV TS REL+G+ +L Sbjct: 280 LIVEITKPDLETKINI-----TLKKMKELNVEFSRDVVLFIAKTVNTSVRELEGSIKRLK 334 Query: 380 FRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTV 438 +T ++A +L ++ E + + +E IQ+ V ++NI +LL N R + Sbjct: 335 AYSEIMGRPITLDVARTVLKDVLEVNEVQPLTVERIQKEVCNYFNIDIKELLGNSRNKKS 394 Query: 439 VRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 V RQ+AMYLSK +T S I R F +DHTT+L+A K+++++E D LK V+L+K Sbjct: 395 VTARQIAMYLSKELTDESLSSIARYFHKKDHTTILNAANKIKEIMEKDRKLKYTVDLIKD 454 Query: 499 LI 500 + Sbjct: 455 KL 456 >gi|329769245|ref|ZP_08260663.1| chromosomal replication initiator protein DnaA [Gemella sanguinis M325] gi|328839336|gb|EGF88917.1| chromosomal replication initiator protein DnaA [Gemella sanguinis M325] Length = 491 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 127/500 (25%), Positives = 234/500 (46%), Gaps = 43/500 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWF--QRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 N ++ I+ LK ++ V+ +WF + + I+ ++ + +I Y Sbjct: 3 NSNFLWEIILKELKAELPAQVFETWFLGASIDKVDFANKIIVITSKEALVSQFIHGAYDA 62 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEK----TASSPSITKLSPINTNISKSPIILGK 147 + ++ + +E EK T ++ I + + + N + Sbjct: 63 RLKQILKNTTGFDFNIEYDSLDNNFEIPEKPTKTTPAAEDIIRQNFLQGNKPSGAQHFYQ 122 Query: 148 QTISPVFG----------------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGY 191 + P+ L+ + F F+ G+ N A A ++A+ Y Sbjct: 123 KQSLPLDEYKKPVASNNNFNSKKNPTLNKNYTFDNFVVGAGNIYAHNVAYNVADSPGGIY 182 Query: 192 TTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF------ASAI 245 NPLFI+ GLGKTHLL AI N K P ++ +++E F+ F Sbjct: 183 -----NPLFIYGGAGLGKTHLLHAIGNEMEKNFPEFKIECISSEKFLNEFLASIKPMKNK 237 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 DN + + R+ID LLIDD+QFL GK Q+ F H N L + KQ+V +D+ PS+ Sbjct: 238 NDNADEDFRRKYRDIDALLIDDIQFLSGKTETQNAFFHTFNELQMNQKQIVLISDKSPSQ 297 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 L L+ R+ +R + GV+ + D+E R +ILK + + ++EE L++++ V Sbjct: 298 LNDLEDRLVTRFEQGVTTDITPPDFETRMAILK-----YKCTQFDIELDEETLIYISNNV 352 Query: 365 TTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 +++ REL+G + + + IA+E+L V K + + I + Y+ Sbjct: 353 SSNIRELEGVLKSIKSMSATMNKKPSLHIAEEILKD-VRKAPRKNISPDHIINACSDFYS 411 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 I ++D+LS+ R + VV+ R +A+YL + +T SFP IG+ F ++DHT++L++ K+ K+ Sbjct: 412 IRKDDILSSTRKKEVVQARNIAIYLCRELTNLSFPAIGQHF-NKDHTSILYSFNKIAKLN 470 Query: 484 ETD-ITLKKEVELLKRLISE 502 E + + + + ++K + + Sbjct: 471 EDEFPDIFENISMIKEKLGQ 490 >gi|315931305|gb|EFV10274.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 327] Length = 440 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 118/465 (25%), Positives = 231/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAIIHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|255017120|ref|ZP_05289246.1| chromosomal replication initiation protein [Listeria monocytogenes FSL F2-515] Length = 295 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 114/301 (37%), Positives = 184/301 (61%), Gaps = 12/301 (3%) Query: 180 AQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMW 239 + ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N +V+YL++E F Sbjct: 1 SLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDNAKVMYLSSEKFTN 55 Query: 240 RFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAA 298 F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N+L D KQ++ ++ Sbjct: 56 EFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLYDEQKQIIISS 115 Query: 299 DRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLM 358 DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + + L+I EV++ Sbjct: 116 DRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRK-----KAKADGLDIPNEVML 170 Query: 359 HVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 ++A + ++ REL+GA ++V S +TA +A E L ++ + +++ + I IQ Sbjct: 171 YIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSSKSQVITISGIQEA 230 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 V +++++ D + +R +++ PRQ+AMYLS+ +T S P+IG FG RDHTTV+HA Sbjct: 231 VGEYFHVRLEDFKAKKRTKSIAFPRQIAMYLSRELTDASLPKIGDEFGGRDHTTVIHAHE 290 Query: 478 K 478 K Sbjct: 291 K 291 >gi|269214503|ref|ZP_05986706.2| replication initiation protein DnaA [Neisseria lactamica ATCC 23970] gi|269209657|gb|EEZ76112.1| replication initiation protein DnaA [Neisseria lactamica ATCC 23970] Length = 559 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 135/393 (34%), Positives = 218/393 (55%), Gaps = 16/393 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 R LP ++A+ P + + P +++ G + + L + F T +EG Sbjct: 179 RMKNLPHGSRSAAEP-VLRPEPQAAAKARTDAQSGAEEAR-YEQTNLSRDYTFDTLVEGK 236 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ N +K +P+ +V Y Sbjct: 237 GNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVGNELLKNRPDAKVRY 291 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N + Sbjct: 292 MHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNE 351 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E + Sbjct: 352 KKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQK-----KAEAAGI 406 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKK 408 +I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ K Sbjct: 407 SIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQDIIAEKH-KV 465 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + + I VAK+Y+I +D+L +R R++ RPRQVAM LSK +T S P IG FG RD Sbjct: 466 ITADLIIDAVAKYYHIRISDILGKKRTRSLARPRQVAMTLSKELTTMSLPAIGDAFGGRD 525 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+HA+R V + E D L ++ E L LI Sbjct: 526 HTTVMHAIRAVTSLREEDPELNQDYEKLLILIQ 558 Score = 59.7 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 11/130 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 L + + + RL + + P +A W L + + F +K+R+ Sbjct: 27 LSMTLAEFWPMCLRRLHDTLPPGQFAQWIAPLTVGE-EDGVWVVYGKNQFACNMLKSRFA 85 Query: 91 ETITKLFQEE----------HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISK 140 I L +E E+ VA + + + S+ Sbjct: 86 GKIEALREECAPERAAFVFKAGEGVRYEMAAAGVAEKPPVREVRDELPARAALSEAMPSE 145 Query: 141 SPIILGKQTI 150 +P +T+ Sbjct: 146 APSEPPSETL 155 >gi|319639360|ref|ZP_07994111.1| chromosomal replication initiator protein dnaA [Neisseria mucosa C102] gi|317399544|gb|EFV80214.1| chromosomal replication initiator protein dnaA [Neisseria mucosa C102] Length = 506 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 145/516 (28%), Positives = 237/516 (45%), Gaps = 76/516 (14%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI----------TKLFQE 99 + +A W L + + + F +K+++ I F Sbjct: 2 LPAGQFAQWIAPLTVGE-ENGVWVVYGKNQFACNMLKSQFAAKIDAVRAELVPQQAAFAF 60 Query: 100 EHSRIQGVEILVRSVAL------------------------------PSVEKTASSPSIT 129 + E+ ++VA PS + + ++T Sbjct: 61 KPGVGTHYEMAAQAVAPVQVQEVIEVEECVEPVQMPLQTAAAVEEDGPSETVSKPAAAMT 120 Query: 130 KLSPINTNISKSPIILGKQTISPVFG---------------------SPLDSRFVFSTFI 168 + + P QT +P + L + F T + Sbjct: 121 AAEILAQRMKNLPHEPQVQTAAPAESKAVAKAKAAAQHDAEEARYEQTNLSRDYTFETLV 180 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG NR+A AAQ+IAE GY NP F++ S GLGKTHL+QAI N +K +P+ + Sbjct: 181 EGKGNRLAAAAAQAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIGNELLKNRPDAK 235 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSL 287 V Y+ ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N Sbjct: 236 VRYMHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHF 295 Query: 288 LDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKED 347 + KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E Sbjct: 296 HNEKKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQK-----KAEA 350 Query: 348 PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGE 405 ++I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ Sbjct: 351 AGISIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQDIIAEKH 410 Query: 406 TKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFG 465 K + + I AK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG Sbjct: 411 -KVITADIIIDATAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDAFG 469 Query: 466 DRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 RDHTTV+H V+ V K+ E D L ++ E L LI Sbjct: 470 GRDHTTVMHGVKAVAKLREEDPELAQDYEKLLILIQ 505 >gi|297158791|gb|ADI08503.1| chromosomal replication initiation protein [Streptomyces bingchenggensis BCW-1] Length = 618 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 118/351 (33%), Positives = 189/351 (53%), Gaps = 14/351 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ +++F TF+ G+SNR A V NPLFI+ GLGKTHLL Sbjct: 276 TARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 330 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + P RV Y+++E F F ++IRD A + R++D+LL+DD+QFL K Sbjct: 331 AIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKADAFRKRYRDMDILLVDDIQFLASK 390 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 391 ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 450 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 451 AILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGL 505 Query: 393 ADELLSHLVNTGET--KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ GE ++ I A ++ + +DL R R +V RQ+AMYL + Sbjct: 506 TEIVLKDLIPGGEDAAPEITATAIMAATADYFGHTVDDLCGASRSRVLVTARQIAMYLCR 565 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +T S P+IG +FG RDHTTV+HA RK+ ++ ++ +V L I Sbjct: 566 ELTDLSLPKIGAQFGGRDHTTVMHADRKIRALMAERRSIYNQVTELTNRIK 616 Score = 48.1 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%) Query: 58 WFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP 117 W +R + +++ + L+VP F K ++ R +++ E R + I V A Sbjct: 24 WIKRCQPLALVADTALLAVPNEFAKGVLEGRLAPIVSETLSRECGRPIRIAITVDDSAAE 83 Query: 118 SVEKTASS 125 + Sbjct: 84 PMVPQQPQ 91 >gi|313892203|ref|ZP_07825796.1| chromosomal replication initiator protein DnaA [Dialister microaerophilus UPII 345-E] gi|313119341|gb|EFR42540.1| chromosomal replication initiator protein DnaA [Dialister microaerophilus UPII 345-E] Length = 494 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 137/498 (27%), Positives = 246/498 (49%), Gaps = 35/498 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ + +K P Y +++++ + + + +L +WI+ Y Sbjct: 1 MNLFTLWGFILEYIKKN-DPQYYEMFYKKIFPSLLDEKELTIITQDPYLVSWIEALYKTK 59 Query: 93 ITKLFQEEHSRIQGVEILVR-------SVALPSVEKTASSPSITKLSPINTNIS------ 139 + + E+ ++ + IL + S +P + P + ++ P + + Sbjct: 60 LETIISEKLNKPMKIVILSKEDHEEKKSEKIPDFMEEEKLPLMDEVKPYSPPENILINIP 119 Query: 140 -----------KSPIILGKQTISPVFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAE- 185 ++ K PV+ SP +++ F TF+ G+ N +A +A S+A+ Sbjct: 120 KNSQDIVLPSIQNYSKQTKVKEKPVYKSPNPINTEHTFETFVHGNCNEMAFQSALSVAQM 179 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 + ++NPLFI+ GLGKTHLL AI N + P+L +++++E F ++I Sbjct: 180 AVNMEEMDKKMNPLFIYGPSGLGKTHLLHAICNYIRENAPHLSYIFVSSETFTNELIASI 239 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 + N ++ RN D LLIDD+QF K + E + N+L D+ K ++ +DR PS+ Sbjct: 240 KSNSMPKFREKYRNPDYLLIDDVQFFGSKNSSKMEIFNTFNTLFDNKKHIILTSDRTPSD 299 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 +E L+ RI++R G+ VP+ DYE+ IL+ + E +NI EV+ ++A + Sbjct: 300 IEELEDRIQTRFSSGLIVPISPPDYEICSIILEK-----RAEKEGINIPSEVINYIAEHI 354 Query: 365 TTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 T+ RELDGAFN+LV +T E A E L + + +++ E I V +N Sbjct: 355 NTNVRELDGAFNKLVTYAKVQKKEMTLEFAKETLKDQIPLEQNREITPEIIINTVCNKFN 414 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + + +LL R + +V PRQ+AMYL + SFP + F +DH+T+L+A +VEK + Sbjct: 415 VKKENLLGKGRPKNIVIPRQIAMYLCRKELNLSFPILRDIFKRKDHSTILYACERVEKDI 474 Query: 484 ETDITLKKEVELLKRLIS 501 D K+ +E L ++ Sbjct: 475 AKDNETKRIIEELSNMLK 492 >gi|121612751|ref|YP_999720.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004697|ref|ZP_02270455.1| chromosomal replication initiation protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205355742|ref|ZP_03222512.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8421] gi|166201874|sp|A1VX79|DNAA_CAMJJ RecName: Full=Chromosomal replication initiator protein DnaA gi|87248987|gb|EAQ71949.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 81-176] gi|205346519|gb|EDZ33152.1| chromosomal replication initiator protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 440 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 118/465 (25%), Positives = 231/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFDSFVVGDSNKYAYGACKAITHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKI 434 >gi|148269146|ref|YP_001243606.1| chromosomal replication initiation protein [Thermotoga petrophila RKU-1] gi|166215367|sp|A5IIK7|DNAA_THEP1 RecName: Full=Chromosomal replication initiator protein DnaA gi|147734690|gb|ABQ46030.1| chromosomal replication initiator protein DnaA [Thermotoga petrophila RKU-1] Length = 440 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 142/468 (30%), Positives = 221/468 (47%), Gaps = 40/468 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 + +K +V + WF S+ N V SV F+K W++ +Y ++K + Sbjct: 3 ERILQEIKTRVNRKSWELWFSSFDVRSIEGNKVVFSVGNLFIKEWLEKKYHSVLSKAVKV 62 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 EI A P + P+ + V +PL+ Sbjct: 63 VLGNDATFEITY----------EAFEPHSSYSEPLVKKRA-------------VLLTPLN 99 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + F F+ G N A AA +A+ NPLFI+ VGLGKTHLLQ+I N Sbjct: 100 PDYTFENFVVGPGNSFAYHAALEVAKHPGR------YNPLFIYGGVGLGKTHLLQSIGNY 153 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQ 277 ++ +P+LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q Sbjct: 154 VVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQ 213 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E H N L DS KQ+V +DR P +L R+ SR Q G+ L D E R SI K Sbjct: 214 TELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAK 273 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADEL 396 L I E + EEVL VA V + R L GA + LV++ + + A L Sbjct: 274 KMLEIEHGE-----LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLREAILL 328 Query: 397 LSHLVNTGETKKM-RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + K M I+++ +VAK +SR ++LSN R + R++ MY++K Sbjct: 329 LKDFIKPNRVKAMDPIDELIEIVAKVTGVSREEILSNNRNVKALTARRIGMYVAKNHLNS 388 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEK-MLETDITLKKEVELLKRLISE 502 S I +F +R H VL +V++V+ +L+ + LK ++ + IS+ Sbjct: 389 SLRTIAEKF-NRSHPVVLDSVKRVKDSLLKGNKQLKSLIDEVIGEISK 435 >gi|329121620|ref|ZP_08250241.1| DNA-directed DNA replication initiator protein DnaA [Dialister micraerophilus DSM 19965] gi|327468775|gb|EGF14252.1| DNA-directed DNA replication initiator protein DnaA [Dialister micraerophilus DSM 19965] Length = 494 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 142/498 (28%), Positives = 249/498 (50%), Gaps = 35/498 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N +++ + +K P Y +++++ + + + +L +WI+ Y Sbjct: 1 MNLFTLWGFILEYIKKN-DPQYYEMFYKKIFPSLLDEKELTIITQDPYLVSWIEALYKTK 59 Query: 93 ITKLFQEEHSRIQGVEILVR-------SVALPSVEKTASSPSITKLSPINT------NIS 139 + + E+ ++ + IL + S +P + P + ++ P N NI Sbjct: 60 LETIISEKLNKPMKIIILSKEDHEEKKSEKIPDFMEEEKLPLMDEVKPYNPPENILINIP 119 Query: 140 KSPIILGKQTIS-----------PVFGSP--LDSRFVFSTFIEGSSNRVALTAAQSIAE- 185 K+ + +I PV+ SP +++ F TF+ G+ N +A +A S+A+ Sbjct: 120 KNSQDIVLPSIQNYSKQTKIKEKPVYKSPNPINTEHTFETFVHGNCNEMAFQSALSVAQM 179 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI 245 + ++NPLFI+ GLGKTHLL AI N + P+L +++++E F ++I Sbjct: 180 AVNMEEMDKKMNPLFIYGPSGLGKTHLLHAICNYIRENAPHLSYIFVSSETFTNELIASI 239 Query: 246 RDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSE 304 + N ++ RN D LLIDD+QF K + E + N+L D+ K ++ +DR PS+ Sbjct: 240 KSNSMPKFREKYRNPDYLLIDDVQFFGSKNSSKMEIFNTFNTLFDNKKHIILTSDRTPSD 299 Query: 305 LESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTV 364 +E L+ RI++R G+ VP+ DYE+ IL+ + E +NI EV+ ++A + Sbjct: 300 IEELEDRIQTRFSSGLIVPISPPDYEICSIILEK-----RAEKEGINIPSEVINYIAEHI 354 Query: 365 TTSGRELDGAFNQLVFRHSFAP-ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYN 423 T+ RELDGAFN+LV +T E A E L + + +++ E I V +N Sbjct: 355 NTNVRELDGAFNKLVTYAKVKKKEITLEFAKETLKDQIPLEQNREITPEIIINTVCNKFN 414 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 + + +LL R + +V PRQ+AMYL + SFP + F +DH+T+L+A +VEK + Sbjct: 415 VKKENLLGKGRPKNIVIPRQIAMYLCRKELNLSFPILRDIFKRKDHSTILYACERVEKDI 474 Query: 484 ETDITLKKEVELLKRLIS 501 D KK +E L ++ Sbjct: 475 AKDNETKKIIEELSNMLK 492 >gi|224531666|ref|ZP_03672298.1| chromosomal replication initiator protein DnaA [Borrelia valaisiana VS116] gi|224511131|gb|EEF81537.1| chromosomal replication initiator protein DnaA [Borrelia valaisiana VS116] Length = 486 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 132/496 (26%), Positives = 251/496 (50%), Gaps = 35/496 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIQISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI------NTNISKSPII 144 + I ++ + + + S ++ + + + P NT SK PI Sbjct: 60 KKIKEILTKNGYNNTVIVFTDQPPKPYSSKQESEKTTFNGIFPNFDKLKGNTPSSKEPIQ 119 Query: 145 ---------LGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + K+ S F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 SIKDHIKMYIKKEEGSTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY--- 176 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 177 --NPCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFK 234 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DRPPSEL + R++ Sbjct: 235 KKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRPPSELTNFTDRLK 294 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 +R G++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ Sbjct: 295 NRFTRGLNVDISKPNFELRVAIIEK-----KAEEDGIKVPKNILNLVAQKVTTNVRDLEA 349 Query: 374 AFNQLVFRHSFAPI-LTAEIADELLSHLVN------TGETKKMRIEDIQRMVAKHYNISR 426 A +L I + +I ++++ ++ K+ IE+I++++ + I+ Sbjct: 350 AVTKLKAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKIAH 409 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 410 KDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNND 469 Query: 487 ITLKKEVELLKRLISE 502 + + L I + Sbjct: 470 KEINNLITELMNKIKK 485 >gi|86152361|ref|ZP_01070571.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 260.94] gi|315123617|ref|YP_004065621.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840658|gb|EAQ57910.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 260.94] gi|315017339|gb|ADT65432.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 440 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 118/465 (25%), Positives = 231/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAIIHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|111115264|ref|YP_709882.1| chromosomal replication initiator protein [Borrelia afzelii PKo] gi|216263632|ref|ZP_03435627.1| chromosomal replication initiator protein DnaA [Borrelia afzelii ACA-1] gi|123046987|sp|Q0SN72|DNAA_BORAP RecName: Full=Chromosomal replication initiator protein DnaA gi|110890538|gb|ABH01706.1| chromosomal replication initiator protein [Borrelia afzelii PKo] gi|215980476|gb|EEC21297.1| chromosomal replication initiator protein DnaA [Borrelia afzelii ACA-1] Length = 485 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 131/495 (26%), Positives = 251/495 (50%), Gaps = 34/495 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESVGDNIKISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI-----NTNISKSPII- 144 + I ++ + +S S ++ + + + P T +SK P+ Sbjct: 60 KKIKEILTNNGYDNVTIVFTNQSPKTYSSKEESEKTTFNETFPTLDKLKGTTLSKEPLQS 119 Query: 145 --------LGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + K+ F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 IKDRIKMYIKKEEEPKNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGTKY---- 175 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 176 -NPCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKK 234 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DRPPSEL + R++S Sbjct: 235 KYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRPPSELTNFTDRLKS 294 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A Sbjct: 295 RFTRGLNVDISKPNFELRVAIIEK-----KAEEDGIKVPKNILNLVAQKVTTNVRDLEAA 349 Query: 375 FNQLVFRHSFAPI-LTAEIADELLSHLVN------TGETKKMRIEDIQRMVAKHYNISRN 427 +L I + +I ++++ ++ + K+ IE+I++++ + I+ Sbjct: 350 VTKLKAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNEPSNKINIENIKKILLRELKIAHK 409 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 410 DIEGHSKKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDRDRNKDK 469 Query: 488 TLKKEVELLKRLISE 502 + + L I + Sbjct: 470 EINNLITELMNKIKK 484 >gi|307746965|gb|ADN90235.1| Chromosomal replication initiator protein dnaA [Campylobacter jejuni subsp. jejuni M1] Length = 440 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 118/465 (25%), Positives = 231/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S + I S I Sbjct: 64 EVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAIIHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGIIERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|315928462|gb|EFV07774.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 440 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 117/465 (25%), Positives = 230/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I ++ + I S I Sbjct: 64 EVQSGNKAIINIQAQNTKQSNKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAITHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R+ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRTVIYLARALTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + P++ F +DHT + H V+K+ +M+E D +LK ++E LK I Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKI 434 >gi|257062755|ref|YP_003142427.1| chromosomal replication initiator protein DnaA [Slackia heliotrinireducens DSM 20476] gi|256790408|gb|ACV21078.1| chromosomal replication initiator protein DnaA [Slackia heliotrinireducens DSM 20476] Length = 501 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 139/505 (27%), Positives = 256/505 (50%), Gaps = 38/505 (7%) Query: 31 LEV-NCESIFTIVSSRLKN--QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +++ + + + V +++K V P ++F RL ++ + L+ T F K ++ Sbjct: 1 MDITDLYATWNSVCNQIKTYGDVNPHQVDAYFSRLHPQAISEGFLVLTADTAFFKMQVEK 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVRSVALPSVE-------------------KTASSPSI 128 RYL I + ++ VEI V + S+ + Sbjct: 61 RYLTHIIQALKDTTGIDFMVEIEVDETEPAPQPVVVQQPVFEPQQDVGLFPGQPISTQLV 120 Query: 129 TKLSPINTNIS-KSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVD 187 T+ P + ++ + + ++ I+ + L S F +F+ G+SN +A + A ++AE Sbjct: 121 TETEPQPSCLTGEGSEAMMEEEIARSKAATLASSLTFESFVTGNSNMLAYSLAVAVAEAP 180 Query: 188 SHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA--- 244 T NPLFI+ GLGKTHLL+AI N ++ P + VVY+ + F+ + SA Sbjct: 181 GQPNT----NPLFIYGKSGLGKTHLLRAIQNYVMETNPTMDVVYIDSSEFLAEYTSAVTA 236 Query: 245 --IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRP 301 N ++ + D+LLIDD+QF QGK L N L+D+ KQVV +ADR Sbjct: 237 HERDRKSFQNFQNRFLDADMLLIDDVQFFQGKSATLDIVFQLFNHLVDAGKQVVLSADRA 296 Query: 302 PSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK--EDPKLNINEEVLMH 359 P + +D R +SR G +V + + E++ I+KN + + E LNI +++ ++ Sbjct: 297 PKMI-DIDERYKSRFNQGATVNVDPPELEVKLGIIKNFINEYEATSESGPLNIPDDIQIY 355 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A +++ REL A +++F+ ++ +T LL ++G TK++ I IQ Sbjct: 356 IAEISSSNVRELKSAVTKVIFQIRYSDSGEITLSEVKTLLEDHFSSGITKRLNIGMIQHE 415 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 V ++Y ++ +L+ +R R +V RQVA+YL + M + IG++FG RDH+T++H+V+ Sbjct: 416 VEQYYKVTHAELIGVKRSRNIVFARQVAIYLCRNMLDIPYAAIGKKFGQRDHSTIMHSVK 475 Query: 478 KVEKMLETDITLKKEVELLKRLISE 502 +E + + +++E+E++ ++I E Sbjct: 476 LIEDRMRSSREMQEEIEIITKMIRE 500 >gi|57504597|ref|ZP_00370709.1| chromosomal replication initiator protein DnaA [Campylobacter coli RM2228] gi|57019492|gb|EAL56186.1| chromosomal replication initiator protein DnaA [Campylobacter coli RM2228] Length = 440 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 122/465 (26%), Positives = 232/465 (49%), Gaps = 38/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETITKLF 97 + LK ++ + Y ++ LKF+ L P L +I+ +Y + I+ + Sbjct: 4 NQILENLKKELSENEYENYIAILKFNEKQSKADFLVFNAPNELLAKFIQTKYSKKISHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + V I +S S I S I Sbjct: 64 EVQSGNKASVLIQAQSQKHSSKSTKIDIAHIKAQSTI----------------------- 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I++ D G NP+FI+ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAISQKDKLG---KLYNPIFIYGLTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----EFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYANILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + IEDI ++ K +NI +D+ S+++ + VV R++A+YL++ +T Sbjct: 331 VMKDHIKEK-KENISIEDILSLICKEFNIKPSDVKSSKKTQNVVTARRIAIYLARELTSL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +F ++ F +DHT + H+V+K+++++E D +K ++E LK I Sbjct: 390 TFSQLANFFVMKDHTAISHSVKKIKELMEDDEQIKTKIEELKNKI 434 >gi|51598691|ref|YP_072879.1| chromosomal replication initiator protein [Borrelia garinii PBi] gi|61212541|sp|Q661I4|DNAA_BORGA RecName: Full=Chromosomal replication initiator protein DnaA gi|51573262|gb|AAU07287.1| chromosomal replication initiator protein [Borrelia garinii PBi] Length = 484 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 124/494 (25%), Positives = 247/494 (50%), Gaps = 33/494 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIQISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL--------------SPINT 136 + I ++ + + + S ++ + + + PI + Sbjct: 60 KKIKEILTKNGYNNVTIVFTNQPPKTYSSKQESEKTTFKETLQNFDKLKGNTLSKEPIQS 119 Query: 137 NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 + + + ++ + L R+ F FI G +NR+A A+ SI++ Y Sbjct: 120 IKDRIKMYIKEEEPTNFKNPFLKKRYTFENFIIGPNNRLAYNASLSISKNPGKKY----- 174 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 175 NPCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKKK 234 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR Sbjct: 235 YRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKSR 294 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 G++V + ++E+R +I++ + E+ + + +++L VA+ VTT+ R+L+ A Sbjct: 295 FTRGLNVDISKPNFELRVAIIEK-----KAEEDGIKVPKDILNLVAQKVTTNVRDLEAAV 349 Query: 376 NQLVFRHSFAPI-LTAEIADELLSHLVN------TGETKKMRIEDIQRMVAKHYNISRND 428 +L I + +I ++++ ++ + K+ IE+I++++ + I+ D Sbjct: 350 TKLKAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNESSNKINIENIKKILLRELKIAHKD 409 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 410 IEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNNDKE 469 Query: 489 LKKEVELLKRLISE 502 + + L I + Sbjct: 470 INNLITELMNKIKK 483 >gi|301058134|ref|ZP_07199186.1| chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] gi|300447766|gb|EFK11479.1| chromosomal replication initiator protein DnaA [delta proteobacterium NaphS2] Length = 449 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 123/470 (26%), Positives = 232/470 (49%), Gaps = 28/470 (5%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++++ + +++K +V + ++ W + + N + L P F K W+ YL+ I + Sbjct: 2 KTVWGEIKNQIKTRVPENTFSLWIKPIICLQAEKNAIVLGCPNRFSKDWVVENYLDLIRE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 F + V++ V ++ +PS +P + I+ G Sbjct: 62 KFDALADKPVDVQLKV--------QRRKRTPSPAAFAPHPDQL----ILPGMPEKKRKKN 109 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L+S+F F FI G SN A +A+++IA D Y + L + ++ GLGKTHL QA Sbjct: 110 FLLNSQFTFDRFIVGQSNEFAFSASKNIALGDGCDYHS-----LLMLSNTGLGKTHLSQA 164 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGK 274 I ++ + + P RV Y+TAE F +++R+ K+ R + D+LL++++ FL GK Sbjct: 165 IGHSILAKNPRSRVFYMTAEDFTNEMIASLRNRRIEAFKNRYRQSCDVLLLEEVHFLGGK 224 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ E + L++L K+++ + PP ++ + + SRL G+ +G DY R Sbjct: 225 EKIQAELGYTLDALAQDRKKIIFTSSLPPKDIPQMSKELSSRLTSGLVTTIGGPDYHTRI 284 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL+ + + + ++++V+ +A + R+++ A L R + ++ Sbjct: 285 KILE-----EKAKGFNVVLSKDVVHFLANRLKRDVRQMESALKCLKARAELVGAKINMDL 339 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A +++S LV+ + + E I +V +Y +S L S R + PR + YL + Sbjct: 340 AKDVVSALVSEEGS--ITTEKIMALVCDYYKVSIEMLGSRSRKKAYAYPRNIYAYLCRKC 397 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 + + IGR +R H+TV++A VEK ++TD +LK +V+LLK+ + + Sbjct: 398 SDETLEFIGRTI-NRSHSTVVYATELVEKKMKTDRSLKHQVDLLKKRLEK 446 >gi|83944868|ref|ZP_00957234.1| Chromosomal replication initiator protein DnaA [Oceanicaulis alexandrii HTCC2633] gi|83851650|gb|EAP89505.1| Chromosomal replication initiator protein DnaA [Oceanicaulis alexandrii HTCC2633] Length = 478 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 156/487 (32%), Positives = 251/487 (51%), Gaps = 18/487 (3%) Query: 16 EIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS 75 + + +DV + +++ V +RL+ + G VYA+ RL+ V + Sbjct: 6 DATARRDGMDVMDSS---SIVTVWRAVRARLREECGDLVYAAEIARLRVELDAAGRVCVI 62 Query: 76 VPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPIN 135 P F +AW+++ + L+ + + I + +T S ++ Sbjct: 63 CPNEFGRAWVEDNVGVRLRALWASVAEQACDIVICTEKTLSSAKSQTVSVAALNAGGVSE 122 Query: 136 TNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 T + + RF F TF+ GS + A Sbjct: 123 TAALPPAEPVEAEAKREA-------RFTFDTFMVGS-----ANMMAATAARAVASADAPP 170 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NP+F H G+GK+HLL AIA+++ +V+YLTAE F+ F SA+R KD Sbjct: 171 FNPVFFHGDYGVGKSHLLAAIAHSASLSGKRKKVLYLTAEEFLNGFQSALRARDVQPFKD 230 Query: 256 SLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 +R+ D+LLIDD+ F+ GK + EF + +L+ + KQVV A+ PS+L D R+R+ Sbjct: 231 LVRDCDMLLIDDVHFICGKPRTEDEFLQTVTALISAEKQVVLASHCAPSQLSVSDDRLRN 290 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 L GG + PL D ++R IL ++A ++ P L + E V +A VT+S REL+G Sbjct: 291 ILAGGFNCPLQGPDLDLRRKILDCKIAQARNHCPDLEVPETVRDFLAARVTSSARELEGV 350 Query: 375 FNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 N ++ R ++ +T E +E L L +++ ++DIQ+ VA +++I+ +DL+S R Sbjct: 351 LNNIIVRTAYMNRPVTMETVEEALGEL-PVKAERRITVDDIQKSVASYFSITVDDLISKR 409 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 R + VVRPR +AMYL+K MT RS P+IGRRFG RDH+TV+HAV K+ + L +D L ++V Sbjct: 410 RTKAVVRPRHIAMYLAKTMTTRSLPDIGRRFGGRDHSTVIHAVNKITETLTSDAVLAEDV 469 Query: 494 ELLKRLI 500 E L+R + Sbjct: 470 EALRRRL 476 >gi|313669121|ref|YP_004049405.1| chromosomal replication initiator protein [Neisseria lactamica ST-640] gi|313006583|emb|CBN88048.1| putative chromosomal replication initiator protein [Neisseria lactamica 020-06] Length = 523 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 135/393 (34%), Positives = 218/393 (55%), Gaps = 16/393 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 R LP ++A+ P + + P +++ G + + L + F T +EG Sbjct: 143 RMKNLPHGSRSAAEP-VLRPEPQAAAKARTDAQGGAEEAR-YEQTNLSRDYTFDTLVEGK 200 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ N +K +P+ +V Y Sbjct: 201 GNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAVGNELLKNRPDAKVRY 255 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N + Sbjct: 256 MHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNE 315 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E + Sbjct: 316 KKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQK-----KAEAAGI 370 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKK 408 +I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ K Sbjct: 371 SIEDEAALFIANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQDIIAEKH-KV 429 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + + I VAK+Y+I +D+L +R R++ RPRQVAM LSK +T S P IG FG RD Sbjct: 430 ITADLIIDAVAKYYHIRISDILGKKRTRSLARPRQVAMTLSKELTTMSLPAIGDAFGGRD 489 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+HA+R V + E D L ++ E L LI Sbjct: 490 HTTVMHAIRAVTSLREEDPELNQDYEKLLILIQ 522 Score = 50.8 bits (120), Expect = 5e-04, Method: Composition-based stats. Identities = 18/119 (15%), Positives = 35/119 (29%), Gaps = 11/119 (9%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE- 100 RL + + P +A W L + + F +K+R+ I L +E Sbjct: 2 CLRRLHDTLPPGQFAQWIAPLTVGE-EDGVWVVYGKNQFACNMLKSRFAGKIEALREECA 60 Query: 101 ---------HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 E+ VA + + + S++P +T+ Sbjct: 61 PERSAFVFKAGEGVRYEMAAAGVAEKPPVREVRDELPARAALSEAIPSEAPSEPPSETL 119 >gi|256826461|ref|YP_003150420.1| chromosomal replication initiator protein DnaA [Cryptobacterium curtum DSM 15641] gi|256582604|gb|ACU93738.1| chromosomal replication initiator protein DnaA [Cryptobacterium curtum DSM 15641] Length = 506 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 137/506 (27%), Positives = 244/506 (48%), Gaps = 44/506 (8%) Query: 35 CESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++++ V R+K + ++F RL + + L+ T F+K WI++ Y + Sbjct: 6 YDALWNTVVERIKTYENIDASQIDAFFSRLVPQAFSEGFLMLTSDTEFIKKWIESHYTDV 65 Query: 93 ITKLFQEEHSRIQGVEILVRSVA--------------------------LPSVEKTASSP 126 I + +E + + I V + + PSV+ Sbjct: 66 IKQALEEIYQVPFTIAIEVDTPSSAAEGVQQDQQNDVTHTTPQHTSQQSEPSVKSLNERG 125 Query: 127 SITKLSPINTNISKSPIILGKQTISPVFGSPLDS---RFVFSTFIEGSSNRVALTAAQSI 183 S + SP++ N S SP + L+S + F +F+ G+SN++A + A ++ Sbjct: 126 SQSPFSPVSNNHSASPFTPTAEETISHNQDFLNSVISGYSFESFVIGTSNKMAYSMAVAV 185 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 AE + NPLFI+ GLGKTHLL++I N P + VY+ + + Sbjct: 186 AETPGQP----QFNPLFIYGKSGLGKTHLLRSIQNYVHHAYPTAKTVYVDTMALVNDYTD 241 Query: 244 A---IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAAD 299 A + K D+LLIDD+Q LQ K + +LNS++D KQVV +AD Sbjct: 242 AAISRSNKSFSQFKQKYETADVLLIDDVQGLQNKKETLNMVFQILNSMIDRGKQVVFSAD 301 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK-EDPKLNINEEVLM 358 R P + +D R SR G + + + E + I+KN L ++ + +I +V Sbjct: 302 RAPKNI-DIDERYMSRFNMGGTCDIQPPELETKLGIIKNYLEECRRGANDDFSIPADVQE 360 Query: 359 HVARTVTTSGRELDGAFNQLVF--RHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQR 416 ++A+ +++ REL A ++VF R++ +T + A LL+ + G K++ I DIQ Sbjct: 361 YIAQNSSSNIRELKSAVTKVVFELRNNGKSEITIDEAARLLTDHFSGGAMKRLSISDIQT 420 Query: 417 MVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAV 476 V ++YN+S +L+ +R + RQ+A+YL + M F IG F +RDH+T++++ Sbjct: 421 AVEQYYNVSHTELVGRKRSANITYARQIAIYLCRTMIDIPFNSIGTEF-NRDHSTIMYSF 479 Query: 477 RKVEKMLETDITLKKEVELLKRLISE 502 R VE+ ++ + +E+E+++++I E Sbjct: 480 RSVEEKVKESRQVNEELEIIRQMIIE 505 >gi|240112104|ref|ZP_04726594.1| chromosomal replication initiation protein [Neisseria gonorrhoeae MS11] gi|240122690|ref|ZP_04735646.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID332] Length = 479 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 133/393 (33%), Positives = 211/393 (53%), Gaps = 16/393 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 R LP + A+ P+ S ++ + L + F T +EG Sbjct: 99 RMKNLPHEPRQAAGPASRPESAAVAKARTDAQRDAEEAR--YEQTNLSPDYTFDTLVEGK 156 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ N +K +P+ +V Y Sbjct: 157 GNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVGNELLKNRPDAKVRY 211 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N + Sbjct: 212 MHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNE 271 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E + Sbjct: 272 KKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAILQK-----KAEAAGI 326 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKK 408 +I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ K Sbjct: 327 SIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLARTALQDIIAEKH-KV 385 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + + I VAK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG RD Sbjct: 386 ITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRD 445 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+H +R V K+ E D L ++ E L LI Sbjct: 446 HTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 478 >gi|240079896|ref|ZP_04724439.1| chromosomal replication initiation protein [Neisseria gonorrhoeae FA19] Length = 478 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 133/393 (33%), Positives = 211/393 (53%), Gaps = 16/393 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 R LP + A+ P+ S ++ + L + F T +EG Sbjct: 98 RMKNLPHEPRQAAGPASRPESAAVAKARTDAQRDAEEAR--YEQTNLSPDYTFDTLVEGK 155 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ N +K +P+ +V Y Sbjct: 156 GNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVGNELLKNRPDAKVRY 210 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N + Sbjct: 211 MHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNE 270 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E + Sbjct: 271 KKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAILQK-----KAEAAGI 325 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKK 408 +I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ K Sbjct: 326 SIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLARTALQDIIAEKH-KV 384 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + + I VAK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG RD Sbjct: 385 ITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRD 444 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+H +R V K+ E D L ++ E L LI Sbjct: 445 HTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 477 >gi|239998133|ref|ZP_04718057.1| chromosomal replication initiation protein [Neisseria gonorrhoeae 35/02] gi|240013314|ref|ZP_04720227.1| chromosomal replication initiation protein [Neisseria gonorrhoeae DGI18] gi|240015759|ref|ZP_04722299.1| chromosomal replication initiation protein [Neisseria gonorrhoeae FA6140] gi|240114850|ref|ZP_04728912.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID18] gi|240117052|ref|ZP_04731114.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID1] gi|240124878|ref|ZP_04737764.1| chromosomal replication initiation protein [Neisseria gonorrhoeae SK-92-679] gi|240127391|ref|ZP_04740052.1| chromosomal replication initiation protein [Neisseria gonorrhoeae SK-93-1035] Length = 478 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 133/393 (33%), Positives = 211/393 (53%), Gaps = 16/393 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 R LP + A+ P+ S ++ + L + F T +EG Sbjct: 98 RMKNLPHEPRQAAGPASRPESAAVAKARTDAQRDAEEAR--YEQTNLSPDYTFDTLVEGK 155 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ N +K +P+ +V Y Sbjct: 156 GNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVGNELLKNRPDAKVRY 210 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N + Sbjct: 211 MHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNE 270 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E + Sbjct: 271 KKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAILQK-----KAEAAGI 325 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKK 408 +I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ K Sbjct: 326 SIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLARTALQDIIAEKH-KV 384 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + + I VAK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG RD Sbjct: 385 ITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRD 444 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+H +R V K+ E D L ++ E L LI Sbjct: 445 HTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 477 >gi|219685250|ref|ZP_03540070.1| chromosomal replication initiator protein DnaA [Borrelia garinii Far04] gi|219673346|gb|EED30365.1| chromosomal replication initiator protein DnaA [Borrelia garinii Far04] Length = 485 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 127/495 (25%), Positives = 248/495 (50%), Gaps = 34/495 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLYFLESIGDNIQISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL--------------SPINT 136 + I ++ + + + S ++ + + + PI + Sbjct: 60 KKIKEILTKNGYNNVTIVFTNQPPKTYSSKQESEKTTFNETLQNFDKLKGNTLSKEPIQS 119 Query: 137 NISKSPIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + + K+ F +P L R+ F FI G +NR+A A+ SI++ Y Sbjct: 120 IKDHIKMYIKKEEEPTNFKNPFLKKRYTFENFIIGPNNRLAYNASLSISKNPGKKY---- 175 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 176 -NPCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKK 234 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++S Sbjct: 235 KYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKS 294 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + ++E+R +I++ + E+ + + +++L VA+ VTT+ R+L+ A Sbjct: 295 RFTRGLNVDISKPNFELRVAIIEK-----KAEEDGIKVPKDILNLVAQKVTTNVRDLEAA 349 Query: 375 FNQLVFRHSFAPI-LTAEIADELLSHLVN------TGETKKMRIEDIQRMVAKHYNISRN 427 +L I + +I ++++ ++ + K+ IE+I++++ + I+ Sbjct: 350 VTKLKAYIDLDNIEIDIDIVEKIIKEIIIYEKDTTNEPSNKINIENIKKILLRELKIAHK 409 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 410 DIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNNDK 469 Query: 488 TLKKEVELLKRLISE 502 + + L I + Sbjct: 470 EINNLITELMNKIKK 484 >gi|284799976|ref|ZP_05985356.2| DNA replication initiator protein [Neisseria subflava NJ9703] gi|284796247|gb|EFC51594.1| DNA replication initiator protein [Neisseria subflava NJ9703] Length = 506 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 206/384 (53%), Gaps = 16/384 (4%) Query: 123 ASSPSITKLSPINTNISKSPIILGKQTISPV--FGSPLDSRFVFSTFIEGSSNRVALTAA 180 P + +P + + + L + F T +EG NR+A AA Sbjct: 133 PHEPQVQTAAPAESKAVAKAKTDAQHDAEEARYEQTNLSRDYTFETLVEGKGNRLAAAAA 192 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 Q+IAE GY NP F++ S GLGKTHL+QAI N +K +P+ +V Y+ ++ ++ Sbjct: 193 QAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRS 247 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 F A+R+N K + DLL+IDD+QF++GK EF +L N + KQ++ D Sbjct: 248 FMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCD 307 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 P+++E +D R++SR G+++ L + EMR +IL+ + E ++I +E + Sbjct: 308 VLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQK-----KAEAAGISIEDEAALF 362 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A + ++ REL+GAFN++ F P++ ++A L ++ K + + I Sbjct: 363 IANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQDIIAEKH-KVITADIIIDA 421 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 AK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG RDHTTV+H V+ Sbjct: 422 TAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDAFGGRDHTTVMHGVK 481 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 V K+ E D L ++ E L LI Sbjct: 482 AVAKLREEDPELAQDYEKLLILIQ 505 >gi|227485757|ref|ZP_03916073.1| DNA-directed DNA replication initiator protein [Anaerococcus lactolyticus ATCC 51172] gi|227236312|gb|EEI86327.1| DNA-directed DNA replication initiator protein [Anaerococcus lactolyticus ATCC 51172] Length = 459 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 140/475 (29%), Positives = 237/475 (49%), Gaps = 24/475 (5%) Query: 34 NCESIFTIVSSRLKNQVG-PDVYASWFQRLKFHSVLHNIVHLSVP---TNFLKAWIKNRY 89 N E I + + +K V + +W LK ++ ++++L +P T F+ I Sbjct: 3 NLEFITNELKNEMKMHVSDKQQFNTWINILKPLNLHKDVLYLEIPKKDTLFIFEGIWKAK 62 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 L+ E+ VE++ + K+ + + K + Sbjct: 63 LQEALDGIAEKIGGKLKVEVVAK-----------DGEDYQKILTLGRDYDKD-GQMRIDK 110 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L+ VF F++G SN+ AL +Q++A+ S G + NPLFI+ S GLGK Sbjct: 111 VKSFPKPQLEEANVFENFVQGKSNQYALGISQAVADTISRGDVSKVYNPLFIYGSSGLGK 170 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QAIA+ ++ + + V+YL++E F +A+R N ++ R+ D+LLIDD+Q Sbjct: 171 THLIQAIAHQILEARDDAYVMYLSSEKFTNEMIAALRTNKNQEFREKYRSADILLIDDIQ 230 Query: 270 FLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ K Q EF H N L ++ KQ+V +D+PP E++ L+ R+ SR G+ + D Sbjct: 231 FIANKEATQEEFFHTFNDLYNAGKQIVITSDKPPREIKHLEDRLVSRFNYGIIADISRPD 290 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPIL 388 YE R +IL+ + ED I+ +L ++A + T+ R+L+GA + + + Sbjct: 291 YETRVAILQK-----KLEDLGAIIDNSILSYIALEIDTNIRDLEGALSTAIAYAKSDGRI 345 Query: 389 TAEIADELLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + D + KK+ I DIQ+ VA YN+ DL R + +V PRQ+AM+ Sbjct: 346 EVSMEDAIKGVGTRVKNKRKKLTIADIQQAVANKYNVKLQDLKGKSRKKEIVNPRQIAMF 405 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +S+ + S I F +RDHTTV+H + K+ M++ D LK E++ L + I + Sbjct: 406 ISRELLDDSLVTIANAF-ERDHTTVIHGIDKITDMIDEDEDLKNEIDALIKEIKD 459 >gi|224541288|ref|ZP_03681827.1| hypothetical protein CATMIT_00448 [Catenibacterium mitsuokai DSM 15897] gi|224525792|gb|EEF94897.1| hypothetical protein CATMIT_00448 [Catenibacterium mitsuokai DSM 15897] Length = 459 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 135/477 (28%), Positives = 236/477 (49%), Gaps = 38/477 (7%) Query: 34 NCESIFTIVSSRL-KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 N + +T +R +N V+ S F + + + +N + +++ + F K +I++ Sbjct: 12 NLKQFWTETLNRYGENSDDKIVFDSIFTQTEAKELQNNELIITIESVFNKTFIEDA---- 67 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 ++ ++ + G++ ++ + E N N +K+P++ K+ I Sbjct: 68 -SEQLEDFFYEVSGIKATIKVMTTQEYE--------------NMNKAKAPVVEVKEEID- 111 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F L + F F+ G+ NR+A AA ++A NPLF+H++ GLGKTHL Sbjct: 112 DFDDHLSAELTFDNFVVGNCNRIAQNAALAVALKPG------TYNPLFLHSNSGLGKTHL 165 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N K+ P R++Y AE F+ + AI +N R++D+LLIDD+QF+ Sbjct: 166 LNAIGNYVKKKFPGKRILYTNAEAFVNDYVEAIGNNTIATFNRRYRSVDVLLIDDIQFIA 225 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K F ++ N+L S KQ+V +D+PP EL+ ++ R+ SR + G++V + ++E Sbjct: 226 NKEGSMEMFFNIFNTLQHSGKQIVITSDKPPVELKGMENRLVSRFRQGLTVTIDNPEFET 285 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH----SFAPI 387 +ILK ++ + P I+EEVL +A R+L+GA L+F Sbjct: 286 AKAILKKKIESRMIDYP---IDEEVLDFIASHFNKDVRDLEGAVTTLLFYKVVCGQNLDH 342 Query: 388 LTAEIADELLS--HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++ + A E T K+ + I+ VA +YN+S L S R ++ R +A Sbjct: 343 ISLDFALEAFDNPDNTTTVTKKEATPDTIKETVASYYNLSVTQLTSKSRTNNIITARHIA 402 Query: 446 MYLSKIMT-PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 MYL + + S+ +IG+ FG RDH+T++ A KV+K ++ D K + L +S Sbjct: 403 MYLVRELVPDISYIQIGQEFGGRDHSTIMKACSKVKKKMKQDPNYKTAINDLMERLS 459 >gi|203287879|ref|YP_002222894.1| chromosomal replication initiator protein [Borrelia recurrentis A1] gi|226735784|sp|B5RRN9|DNAA_BORRA RecName: Full=Chromosomal replication initiator protein DnaA gi|201085099|gb|ACH94673.1| chromosomal replication initiator protein [Borrelia recurrentis A1] Length = 484 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 130/489 (26%), Positives = 249/489 (50%), Gaps = 32/489 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++I++++ + ++ ++ + + WF+ L F + + ++ P +F K ++ R+ + I + Sbjct: 5 KNIWSLILAAIRKELSEEEFYIWFENLYFIDAIGENIKIATPNSFHKNQVEKRFSKRIKE 64 Query: 96 LFQEEHSRIQGVEIL----------VRSVALPSVEKTASSPSITKLSPINTN----ISKS 141 + E+ VE + S +P T TK I T+ I+ + Sbjct: 65 ILIEKGHSTINVEFIHSQNELKDHNTESKDIPLKAITHQQDLQTKNKDIKTHAKNIINNT 124 Query: 142 PIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 K+ I + +P L ++ F FI G++N++A A+ SIA+ Y NP Sbjct: 125 KQYSIKEEIHIKYRNPFLKKKYTFENFIIGTNNKLAYNASLSIAKNPGKKY-----NPCL 179 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHLLQ+I N + + +++Y+TAE F+ F +I+ N K R++ Sbjct: 180 IYGGVGLGKTHLLQSIGNKTEELHKEFKILYVTAENFLNEFVESIKTNETKRFKKKYRHL 239 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LL+DD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR G Sbjct: 240 DMLLLDDIHDLQKKEGIQEELFHTFNALYEDNKQMVFTCDRQPSELVNFTDRLKSRFTRG 299 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A +L Sbjct: 300 LNVDISKPNFELRVAIIEK-----KAEEDGIKVPKNILNLVAKKVTTNIRDLEAAVTKLK 354 Query: 380 FRHSFAPI-LTAEIADELLSHLVN-----TGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 I + I D+++ ++ T K+ IE+I++++ + ++ D+ N Sbjct: 355 AHIDLEDIEIDTNIVDKIIKEIIAYENDHTNTPNKINIENIKKVILRELKLTNKDIEGNS 414 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + + + R + YL + T S EIG+ G + H+TVL+++ K++K ++ + + Sbjct: 415 KKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDKDRNKNLEINNLI 474 Query: 494 ELLKRLISE 502 L I++ Sbjct: 475 IELMNKINK 483 >gi|240120386|ref|ZP_04733348.1| chromosomal replication initiation protein [Neisseria gonorrhoeae PID24-1] Length = 468 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 133/393 (33%), Positives = 211/393 (53%), Gaps = 16/393 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 R LP + A+ P+ S ++ + L + F T +EG Sbjct: 88 RMKNLPHEPRQAAGPASRPESAAVAKARTDAQRDAEEAR--YEQTNLSPDYTFDTLVEGK 145 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR+A AAQ+IAE Y NP F++ S GLGKTHL+QA+ N +K +P+ +V Y Sbjct: 146 GNRLAAAAAQAIAENPGQSY-----NPFFLYGSTGLGKTHLVQAVGNELLKNRPDAKVRY 200 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N + Sbjct: 201 MHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNE 260 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E + Sbjct: 261 KKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAILQK-----KAEAAGI 315 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKK 408 +I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ K Sbjct: 316 SIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLARTALQDIIAEKH-KV 374 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + + I VAK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG RD Sbjct: 375 ITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRD 434 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+H +R V K+ E D L ++ E L LI Sbjct: 435 HTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 467 >gi|225552151|ref|ZP_03773091.1| chromosomal replication initiator protein DnaA [Borrelia sp. SV1] gi|225371149|gb|EEH00579.1| chromosomal replication initiator protein DnaA [Borrelia sp. SV1] Length = 485 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 130/495 (26%), Positives = 250/495 (50%), Gaps = 34/495 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI-----NTNISKSPII- 144 + I ++ + + + ++ + +P+ + P +SK PI Sbjct: 60 KKIKEILIKNGYNNVVILFTNQPSKTHFNKQESKNPAFNETFPSFDKLKEKTLSKEPIQN 119 Query: 145 --------LGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + K+ F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 IQDRIKMYIKKEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY---- 175 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 176 -NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKKFKK 234 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++S Sbjct: 235 KYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKS 294 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L+ A Sbjct: 295 RFTRGLNVDISKPNFELRAAIVEK-----KAEEDGINVPKNILNLVAQKVTTNIRDLEAA 349 Query: 375 FNQLVFRHSFAPI-LTAEIADELLSHLVN------TGETKKMRIEDIQRMVAKHYNISRN 427 +L I + +I ++++ ++ K+ IE+I++++ + I+ Sbjct: 350 VTKLKAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKITHK 409 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 410 DIEGHSKKPDITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNNDK 469 Query: 488 TLKKEVELLKRLISE 502 + + L I + Sbjct: 470 EINNLITELMNKIKK 484 >gi|225077253|ref|ZP_03720452.1| hypothetical protein NEIFLAOT_02308 [Neisseria flavescens NRL30031/H210] gi|224951397|gb|EEG32606.1| hypothetical protein NEIFLAOT_02308 [Neisseria flavescens NRL30031/H210] Length = 504 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 206/384 (53%), Gaps = 16/384 (4%) Query: 123 ASSPSITKLSPINTNISKSPIILGKQTISPV--FGSPLDSRFVFSTFIEGSSNRVALTAA 180 P + +P + + + L + F T +EG NR+A AA Sbjct: 131 PHEPQVQTAAPAESKAVAKAKTDAQHDAEEARYEQTNLSRDYTFETLVEGKGNRLAAAAA 190 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 Q+IAE GY NP F++ S GLGKTHL+QAI N +K +P+ +V Y+ ++ ++ Sbjct: 191 QAIAENPGQGY-----NPFFLYGSTGLGKTHLVQAIGNELLKNRPDAKVRYMHSDDYIRS 245 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 F A+R+N K + DLL+IDD+QF++GK EF +L N + KQ++ D Sbjct: 246 FMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNEKKQLILTCD 305 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 P+++E +D R++SR G+++ L + EMR +IL+ + E ++I +E + Sbjct: 306 VLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRVAILQK-----KAEAAGISIEDEAALF 360 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIEDIQRM 417 +A + ++ REL+GAFN++ F P++ ++A L ++ K + + I Sbjct: 361 IANLIRSNVRELEGAFNRVSASSRFMNRPVIDMDLARTALQDIIAEKH-KVITADIIIDA 419 Query: 418 VAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVR 477 AK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG RDHTTV+H V+ Sbjct: 420 TAKYYRIKISDILGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDAFGGRDHTTVMHGVK 479 Query: 478 KVEKMLETDITLKKEVELLKRLIS 501 V K+ E D L ++ E L LI Sbjct: 480 AVAKLREEDPELAQDYEKLLILIQ 503 >gi|91203534|emb|CAJ71187.1| similar to chromosomal replication initiator protein DnaA [Candidatus Kuenenia stuttgartiensis] Length = 472 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 132/460 (28%), Positives = 235/460 (51%), Gaps = 27/460 (5%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 + + ++ V P+ Y WF R++ S+ N + +VP + +K I YLE I+ + + Sbjct: 33 ESIRAEIRKTVPPEQYDQWFSRMEISSITDNSITFAVPGDSIKNRICADYLEFISSIVYK 92 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 ++I+ + P+IT + + + +++ V S ++ Sbjct: 93 LLHPSFEIDII-----------STEKPAITTQMQLQSKDNDI-SNANASSMNIVSLSSIN 140 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 R+ F F+ + NR+A AA S+A + Y NPLFIH + GLGKTHL+ AI N Sbjct: 141 KRYTFENFVVAAYNRMAHAAAISVAGSPGYAY-----NPLFIHGASGLGKTHLMHAINNF 195 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 +++ L+ YL+ E+F+ + SAI+ N + RN+D+LL+DD+QF + + Sbjct: 196 ILQQGR-LKTFYLSCEHFVNHYISAIQSNNMEAFRKFYRNVDVLLMDDIQFFENSYGSRE 254 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L + KQ+V ++ PP + ++ R+ SR + G+ + E R +I++ Sbjct: 255 EFFHTFNALYNDGKQIVITSNYPPESIAYMEDRLVSRFKWGLVCGISTPSLETRAAIVEK 314 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEIADELL 397 R A + ++ E +++A + + REL+GA +L + ++ + ++ Sbjct: 315 RAAA-----WNIKVSHESAVYLAENIPGNIRELEGAIARLSNEAKATNNAVSFDFIRKVS 369 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + +G K + IE + ++K +N+S ++LLS RR RTV PRQ+AM+LS+ +T S Sbjct: 370 REI--SGSKKTVSIEAVLGAISKKFNVSVSELLSKRRTRTVALPRQIAMHLSRKLTNMSL 427 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 EIG G RDH+TV+H + K D L ++ L+ Sbjct: 428 TEIGGYLGGRDHSTVIHGDETIIKKAGNDKNLSFIIQKLE 467 >gi|332654819|ref|ZP_08420561.1| ATPase involved in DNA replication initiation [Ruminococcaceae bacterium D16] gi|332516162|gb|EGJ45770.1| ATPase involved in DNA replication initiation [Ruminococcaceae bacterium D16] Length = 427 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 121/458 (26%), Positives = 205/458 (44%), Gaps = 40/458 (8%) Query: 46 LKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQ 105 ++ ++ +WF ++ + L PT F + I RY+ I +E S Sbjct: 4 MQPEMTATTINTWFDDATAVALEDDRFVLYSPTRFKRDIIATRYVSKIQNALRELFSAEM 63 Query: 106 GVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFS 165 V +L + + + F Sbjct: 64 DVVVLTEGELDQYQQPAQKNDFFPGT----------------------------EEYTFE 95 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 F+ GSSN+ A AA+++A+ Y NPLFI+ GLGKTHLL AIA+ K P Sbjct: 96 RFVVGSSNKFAHAAARAVADNPGQSY-----NPLFIYGESGLGKTHLLYAIAHTIHKNHP 150 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLL 284 +VVY+ + F AIR+ ++ R D+ L+DD+QF+ G+ Q E H Sbjct: 151 EYKVVYIKGDTFTNELIQAIREGRNAEFREKYRGADVFLMDDVQFIAGRDSTQEEMFHTF 210 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N+L + KQ+V +DRPP E+ L+ R+++R + G+ + DYE R +I+KN + Sbjct: 211 NTLYELKKQIVFTSDRPPKEMLRLEDRLKTRFEWGLLADIQPPDYETRMAIIKN-----K 265 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNT 403 + + E +L +A +T + R+++G N+++ + + + + Sbjct: 266 AVRMGVELPEFLLQLIAENITANVRQIEGTVNKIMAYQQLMGDSVDKDTVVRAVKDMFKE 325 Query: 404 GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRR 463 + I V K YNI L R + + RQ+AMY + MT S EIG+ Sbjct: 326 KSDIVPTADVIIDEVCKFYNIEPATLRGQGRAKDISLARQIAMYQIRRMTNLSLKEIGKE 385 Query: 464 FGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 F +RDHTTVLH++ ++E +++TD + ++ + I+ Sbjct: 386 FDNRDHTTVLHSIERIEDLVKTDPEKAEIIKDITSNIN 423 >gi|218777862|ref|YP_002429180.1| chromosomal replication initiator protein DnaA [Desulfatibacillum alkenivorans AK-01] gi|226735801|sp|B8FFL8|DNAA_DESAA RecName: Full=Chromosomal replication initiator protein DnaA gi|218759246|gb|ACL01712.1| chromosomal replication initiator protein DnaA [Desulfatibacillum alkenivorans AK-01] Length = 454 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 133/474 (28%), Positives = 213/474 (44%), Gaps = 28/474 (5%) Query: 30 CLEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + + ++ +++QV Y W L+ + V L P K W+ + Y Sbjct: 1 MMTDSMRLVWEKAKEAIRSQVPDQGYLMWIDPLRVVKAAADSVVLGCPNPLAKKWLMDHY 60 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + Q+ R V + V + E +P L Sbjct: 61 RGLLESAMQQAAQRPLKVLLEVAECVAEAPETPEEAPQQLCLPAF------------ADI 108 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 P G L+ F F +F+ G N A +AA S+A S + PL++ A GLGK Sbjct: 109 PRPSSGRLLNRDFTFDSFVVGDCNDFAYSAALSVASKRSKLHA-----PLYLLAQTGLGK 163 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDM 268 +HL QA+ ++ P RV Y+TAE F A+ + K+ R N D L+++D+ Sbjct: 164 SHLSQAVGRQVMQESPEERVFYITAEDFTNEMIGALNTGTISSFKEKYRRNCDTLILEDV 223 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 FL GK Q E L+SL+++ K++V + PSE+ + +RSRL GV L Sbjct: 224 HFLSGKNRTQDELAFTLDSLMETNKRLVFTSAYLPSEIPKMHDSMRSRLNAGVISSLEAP 283 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAP 386 D+ MR IL+ + K+ + +V +A +T R L+ L R+S Sbjct: 284 DFRMRMRILQR-----KANSAKIALPMDVAEFMASELTGDIRHLESGIKGLAARNSIMGR 338 Query: 387 ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + ++A E++ ++V K + + I +MV K+Y ++ DL S R + + RPRQVAM Sbjct: 339 GIDLKMAREVVGNIVRNR--KALTLGVITKMVCKYYRVTEEDLRSRSRKQAIARPRQVAM 396 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 YL + T +S IGR F +R H T LHAV VE+ + + +++ V L I Sbjct: 397 YLGRRYTDQSLQAIGRTF-NRYHATALHAVGVVERHIRENGDMREPVLFLCGKI 449 >gi|219684275|ref|ZP_03539219.1| chromosomal replication initiator protein DnaA [Borrelia garinii PBr] gi|219672264|gb|EED29317.1| chromosomal replication initiator protein DnaA [Borrelia garinii PBr] Length = 485 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 126/495 (25%), Positives = 247/495 (49%), Gaps = 34/495 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLYFLESIGDNIQISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKL--------------SPINT 136 + I ++ + + + S ++ + + + PI + Sbjct: 60 KKIKEILTKNGYNNVTIVFTNQPPKTYSSKQESEKTTFNESLQNFDKLKGNTLSKEPIQS 119 Query: 137 NISKSPIILGKQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVR 195 + + K+ F +P L R+ F FI G +NR+A A+ SI++ Y Sbjct: 120 IKDHIKMYIKKEEEPTNFKNPFLKKRYTFENFIIGPNNRLAYNASLSISKNPGKKY---- 175 Query: 196 LNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKD 255 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 176 -NPCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKK 234 Query: 256 SLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRS 314 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++S Sbjct: 235 KYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKS 294 Query: 315 RLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGA 374 R G++V + ++E+R +I++ + E+ + + +++L VA+ VTT+ R+L+ A Sbjct: 295 RFTRGLNVDISKPNFELRVAIIEK-----KAEEDGIKVPKDILNLVAQKVTTNVRDLEAA 349 Query: 375 FNQLVFRHSFAPI-LTAEIADELLSHLVN------TGETKKMRIEDIQRMVAKHYNISRN 427 +L I + +I ++++ ++ K+ IE+I++++ + I+ Sbjct: 350 VTKLKAYIDLDNIEIDIDIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKIAHK 409 Query: 428 DLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDI 487 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ + Sbjct: 410 DIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNNNK 469 Query: 488 TLKKEVELLKRLISE 502 + + L I + Sbjct: 470 EINNLITELMNKIKK 484 >gi|295837757|ref|ZP_06824690.1| DNA-directed DNA replication initiator protein [Streptomyces sp. SPB74] gi|295826662|gb|EFG64970.1| DNA-directed DNA replication initiator protein [Streptomyces sp. SPB74] Length = 632 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 175/324 (54%), Gaps = 14/324 (4%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ +++F TF+ G+SNR A V NPLF++ GLGKTHLL Sbjct: 297 TARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFVYGESGLGKTHLLH 351 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + P RV Y+++E F F ++IRD + + R +D+LL+DD+QFL K Sbjct: 352 AIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRKRYREMDILLVDDIQFLADK 411 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 412 ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 471 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 472 AILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGL 526 Query: 393 ADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + +L L+ + ++ I A ++ + DL + R R +V RQ+AMYL + Sbjct: 527 TEIVLKDLIPGGEDASPEITASAIMSATADYFGQTVEDLCGSSRSRVLVTARQIAMYLCR 586 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLH 474 +T S P+IG +FG RDHTTV+H Sbjct: 587 ELTDLSLPKIGAQFGGRDHTTVMH 610 >gi|218134376|ref|ZP_03463180.1| hypothetical protein BACPEC_02270 [Bacteroides pectinophilus ATCC 43243] gi|217989761|gb|EEC55772.1| hypothetical protein BACPEC_02270 [Bacteroides pectinophilus ATCC 43243] Length = 342 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 131/348 (37%), Positives = 213/348 (61%), Gaps = 14/348 (4%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F TF+ G++N +A AA ++AE H Y NPLFI+ GLGKTHL+QAIA Sbjct: 3 LKPNYTFETFVVGNNNNLAHAAALAVAETPGHVY-----NPLFIYGGAGLGKTHLMQAIA 57 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCA--LNLKDSLRNIDLLLIDDMQFLQGKL 275 + ++ P+L+V+Y+T+E F ++++ ++ RNID+LLIDD+QF+ GK Sbjct: 58 HFIMQNNPDLKVLYVTSETFTNELIESLKNQKMTNQEFRNKYRNIDVLLIDDIQFIIGKE 117 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 Q EF H N+L D+ KQ+V ++D+PP E+E+L R+R+R + G++ + + YE + + Sbjct: 118 STQEEFFHTFNALYDANKQIVISSDKPPKEMETLTERLRTRFEMGLTADIQIPTYETKMA 177 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIA 393 IL + E NI ++V +VA + +S REL+GA +LV + + LT E A Sbjct: 178 ILNK-----KSEAEGYNIPDDVKDYVATHIKSSIRELEGALTKLVAFSTLSHQPLTVEFA 232 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++ L L++ + +++ E I ++VA H+N++ D++S +R + +PRQ+AMYL + MT Sbjct: 233 EDTLKDLISPEDKREVTPELIIQIVADHFNLTPEDIISQKRNAEISKPRQIAMYLCRTMT 292 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +IGR FG+RDHTT+LH RKV K + I + +E+L + I+ Sbjct: 293 DTPLEQIGRYFGNRDHTTILHGYRKVNKEVTNSIETRSLIEILIKKIN 340 >gi|224534658|ref|ZP_03675230.1| chromosomal replication initiator protein DnaA [Borrelia spielmanii A14S] gi|224513906|gb|EEF84228.1| chromosomal replication initiator protein DnaA [Borrelia spielmanii A14S] Length = 484 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 123/494 (24%), Positives = 234/494 (47%), Gaps = 33/494 (6%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I ++ + +S + ++ + + + +P Q+I Sbjct: 60 KKIKEILTNNGYDNVVIVFTNQSPKTYANKQESEKTNFNAFPKFDKLKGNTPSKEPIQSI 119 Query: 151 SPVF--------------GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRL 196 L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 KDRIKMYIKKEEGLTNLKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY----- 174 Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDS 256 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 175 NPCLIYGGVGLGKTHLLQSIGNKTEELHNNLKILYVTAENFLNEFVESIKTHETKKFKKK 234 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR Sbjct: 235 YRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLKSR 294 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 G++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A Sbjct: 295 FTRGLNVDISKPNFELRVAIIEK-----KAEEDGIKVPKNILNLVAQKVTTNVRDLEAAV 349 Query: 376 NQLVFRHSFAPI-------LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 +L I + + K+ IE+I++++ + I+ D Sbjct: 350 TKLKAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPSNKINIENIKKILLRELKIAHKD 409 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 + + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 410 IEGHSKKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDRDRNNDKE 469 Query: 489 LKKEVELLKRLISE 502 + + L I + Sbjct: 470 INNLITELMNKIKK 483 >gi|289177770|gb|ADC85016.1| DnaA [Bifidobacterium animalis subsp. lactis BB-12] Length = 587 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 134/428 (31%), Positives = 210/428 (49%), Gaps = 37/428 (8%) Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + + Y E I + F++ + G V P + S +P T + P+ Sbjct: 183 VTSHYDEAIVQTFEDIDP-VAGFGPSVAGTTAP--QYPPQSEMQGSFTPGVTGNYRDPV- 238 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + L+S F TFI+G SNR A T A ++AE Y NPL I+ Sbjct: 239 -----------THLNSNDTFDTFIQGDSNRFARTVALAVAEGSGRDY-----NPLCIYGG 282 Query: 205 VGLGKTHLLQAIANASIKRQ-PNLRVVYLTAEYFMWRFASAIR-------DNCALNLKDS 256 GLGKTHLL AI N +++ Q P RV+Y+T+E F F +IR D Sbjct: 283 SGLGKTHLLHAIGNYAVQNQKPRPRVLYVTSEEFTNDFIESIRTSGQDNEDPAMEKFYRK 342 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R +D+LLIDD+QFL GK I +F H NSL + K++V A+D PP LE + R+ SR Sbjct: 343 YREVDVLLIDDIQFLGGKRGILEQFFHTFNSLYQANKRIVIASDVPPHNLEDFEDRLISR 402 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G++V + + E R +IL+ E + + +VL +A + REL+GA Sbjct: 403 FEQGITVDVKPPNLETRIAILRML-----AEQNHIRVPNDVLNLIAERFANNVRELEGAL 457 Query: 376 NQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 +++ S +T + + L T +++ DI VAK+++++ +D++ R Sbjct: 458 KRVIAMASLNHQPVTRALTERTLQDFFTTDV--EVKPTDIIARVAKYFHLTFDDIVGPGR 515 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R+V RQ+AMYL++ MT S IG+ FG RDHTTV+HA + + ++ + V Sbjct: 516 PRSVTLARQIAMYLTRDMTSMSLMNIGQIFGGRDHTTVMHACKHIADKMQEKQEIYNYVN 575 Query: 495 LLKRLISE 502 L + + Sbjct: 576 ELTVELKQ 583 >gi|284047387|ref|YP_003397726.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] gi|283951608|gb|ADB46411.1| chromosomal replication initiator protein DnaA [Acidaminococcus fermentans DSM 20731] Length = 386 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 119/392 (30%), Positives = 210/392 (53%), Gaps = 23/392 (5%) Query: 107 VEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFST 166 VE+ + + P+ E ++P+ ++ + P F + L R+ F Sbjct: 7 VELDLFAEQEPAAEPEKTAPAAPPEKKSPASLPQKP-----------FVTNLSPRYTFDN 55 Query: 167 FIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPN 226 F+ G+SNR A + NP F+ + GLGKTHL+ AI N K P+ Sbjct: 56 FVVGNSNRF-----AKAAAMAVANNPAFAYNPFFLFSDSGLGKTHLMNAIGNQIRKNHPD 110 Query: 227 LRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLN 285 ++++Y+++E F ++ N ++ R+ID+LLIDD+QFL+ + Q EF H N Sbjct: 111 MKILYISSETFTNELIESVEHNRLEAFREKYRSIDVLLIDDIQFLRNRESTQEEFFHTFN 170 Query: 286 SLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +L + KQ++ ++DRPP+EL++L+ R+ SR G++ + D E R +IL+N Sbjct: 171 TLEKANKQIIISSDRPPAELDTLEERMISRFNSGLTADIQHPDLETRMAILQNL-----A 225 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTG 404 K+ +V++ +A ++T++ REL+GA+N++ + + +T E+ L L Sbjct: 226 HTDKVPFPNDVILLIASSITSNIRELEGAYNRVCAYSTVSKEPITLELCRSALKELNLLD 285 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRF 464 + + ++ IQ+ VA H+ + R +L+ +R R V PR +A+YL+K M S +IG F Sbjct: 286 TPQFVTVDAIQQQVADHFRLHRAELIEKKRTRRVAVPRMIAIYLTKEMAGLSLKKIGECF 345 Query: 465 GDRDHTTVLHAVRKVEKMLETDITLKKEVELL 496 G RDH+T++HA K++K + D L +E++ L Sbjct: 346 GGRDHSTIIHACEKIQKDRQEDPELNREIDAL 377 >gi|325267547|ref|ZP_08134199.1| DNA-directed DNA replication initiator protein DnaA [Kingella denitrificans ATCC 33394] gi|324980897|gb|EGC16557.1| DNA-directed DNA replication initiator protein DnaA [Kingella denitrificans ATCC 33394] Length = 559 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 133/533 (24%), Positives = 224/533 (42%), Gaps = 75/533 (14%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + RL +++ + + L F ++++Y Sbjct: 37 MKLADFWAQALRRLHSELSEQQFNRAIAPVTLGE-QDGAWVLYAKNQFAVNLLRSQYAAK 95 Query: 93 ITKLFQEEHSRIQGV---------------EILVRSVALPSVEKTASSPS---------- 127 I L E V ++ A P+ E S Sbjct: 96 IAALQAELAPDAPAVCYKIGSGATCAMVDADVQAAFSASPATESPEEKSSLHMETASKTT 155 Query: 128 ------------------------ITKLSPINT--------NISKSPIILGKQTISPV-- 153 T+ +P S +P I ++ Sbjct: 156 GKKSKKASATAILQERMNNLRPDQPTRHTPAADVQAASAAVQDSAAPAIEQEKQREAAEQ 215 Query: 154 --FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 + L S + F T + G N++ + A SIAE NP F++ S GLGKTH Sbjct: 216 RHTQTNLSSEYTFDTLVVGKGNQLPVQVAMSIAENPGDN----MYNPFFVYGSTGLGKTH 271 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+QA+ N + P +V Y+ + ++ F + +++ K + DLL+IDD+QF+ Sbjct: 272 LVQAVGNRLLALNPAAKVRYMHSNEYLKTFMTTVKNKSWDAFKQQYLHYDLLIIDDIQFI 331 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 QGK EF L +Q++ D+ PS LE ++ R+ SR G++V + + E Sbjct: 332 QGKDRTMEEFFFLFEHFHSRNQQIILTCDQLPSGLEHMEKRLISRFSWGMTVRIEPPELE 391 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP--IL 388 MR IL++ + + + +E + +A+ V S REL+GA N+++ R F ++ Sbjct: 392 MRIDILEH-----KAKKMDIQFDEGAALFIAQNVKASVRELEGALNRVIARCRFEKRNVI 446 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++A L ++ + K + + I + VA +Y I +DLL +R R + RPRQ+AM L Sbjct: 447 DIDLATSALQDIIVSNY-KPITADLIMKTVADYYRIRISDLLGKKRTRNIARPRQIAMAL 505 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +K +T S P IG FG RDHTTV+HAV+ V K+ + L+++ L LI Sbjct: 506 TKELTTLSLPAIGDAFGGRDHTTVMHAVKAVTKLRRDEPELEQDYGKLLILIQ 558 >gi|183602668|ref|ZP_02964032.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis HN019] gi|219682500|ref|YP_002468883.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis AD011] gi|241190067|ref|YP_002967461.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195473|ref|YP_002969028.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254777887|sp|B8DV06|DNAA_BIFA0 RecName: Full=Chromosomal replication initiator protein DnaA gi|183218086|gb|EDT88733.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis HN019] gi|219620150|gb|ACL28307.1| chromosomal replication initiator protein DnaA [Bifidobacterium animalis subsp. lactis AD011] gi|240248459|gb|ACS45399.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250027|gb|ACS46966.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793054|gb|ADG32589.1| ATPase for DNA replication initiation [Bifidobacterium animalis subsp. lactis V9] Length = 583 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 134/428 (31%), Positives = 210/428 (49%), Gaps = 37/428 (8%) Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 + + Y E I + F++ + G V P + S +P T + P+ Sbjct: 179 VTSHYDEAIVQTFEDIDP-VAGFGPSVAGTTAP--QYPPQSEMQGSFTPGVTGNYRDPV- 234 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 + L+S F TFI+G SNR A T A ++AE Y NPL I+ Sbjct: 235 -----------THLNSNDTFDTFIQGDSNRFARTVALAVAEGSGRDY-----NPLCIYGG 278 Query: 205 VGLGKTHLLQAIANASIKRQ-PNLRVVYLTAEYFMWRFASAIR-------DNCALNLKDS 256 GLGKTHLL AI N +++ Q P RV+Y+T+E F F +IR D Sbjct: 279 SGLGKTHLLHAIGNYAVQNQKPRPRVLYVTSEEFTNDFIESIRTSGQDNEDPAMEKFYRK 338 Query: 257 LRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSR 315 R +D+LLIDD+QFL GK I +F H NSL + K++V A+D PP LE + R+ SR Sbjct: 339 YREVDVLLIDDIQFLGGKRGILEQFFHTFNSLYQANKRIVIASDVPPHNLEDFEDRLISR 398 Query: 316 LQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAF 375 + G++V + + E R +IL+ E + + +VL +A + REL+GA Sbjct: 399 FEQGITVDVKPPNLETRIAILRML-----AEQNHIRVPNDVLNLIAERFANNVRELEGAL 453 Query: 376 NQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 +++ S +T + + L T +++ DI VAK+++++ +D++ R Sbjct: 454 KRVIAMASLNHQPVTRALTERTLQDFFTTDV--EVKPTDIIARVAKYFHLTFDDIVGPGR 511 Query: 435 VRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVE 494 R+V RQ+AMYL++ MT S IG+ FG RDHTTV+HA + + ++ + V Sbjct: 512 PRSVTLARQIAMYLTRDMTSMSLMNIGQIFGGRDHTTVMHACKHIADKMQEKQEIYNYVN 571 Query: 495 LLKRLISE 502 L + + Sbjct: 572 ELTVELKQ 579 >gi|203284345|ref|YP_002222085.1| chromosomal replication initiator protein [Borrelia duttonii Ly] gi|226735781|sp|B5RLZ3|DNAA_BORDL RecName: Full=Chromosomal replication initiator protein DnaA gi|201083788|gb|ACH93379.1| chromosomal replication initiator protein [Borrelia duttonii Ly] Length = 484 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 127/489 (25%), Positives = 248/489 (50%), Gaps = 32/489 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++I++++ + ++ ++ + + WF+ L F + + ++ P +F K ++ R+ + I + Sbjct: 5 KNIWSLILAAIRKELSEEEFYIWFENLYFIDAIGENIKIATPNSFHKNQVEKRFSKRIKE 64 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG--------- 146 + E+ VE + L + S+ ++ +K+ I Sbjct: 65 ILIEKGHSTINVEFIHSQNELKDHNTESKDISLKAITHQQDLQTKNKDIKTHAKNIINNT 124 Query: 147 -----KQTISPVFGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLF 200 K+ I + +P L ++ F FI G++N++A A+ SIA+ Y NP Sbjct: 125 KQYSIKEEIHIKYRNPFLKKKYTFENFIIGTNNKLAYNASLSIAKNPGKKY-----NPCL 179 Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI 260 I+ VGLGKTHLLQ+I N + + +++Y+TAE F+ F +I+ N K R++ Sbjct: 180 IYGGVGLGKTHLLQSIGNKTEELHKEFKILYVTAENFLNEFVESIKTNETKRFKKKYRHL 239 Query: 261 DLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGG 319 D+LL+DD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++SR G Sbjct: 240 DMLLLDDIHDLQKKEGIQEELFHTFNALYEDNKQMVFTCDRQPSELVNFTDRLKSRFTRG 299 Query: 320 VSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLV 379 ++V + ++E+R +I++ + E+ + + + +L VA+ VTT+ R+L+ A +L Sbjct: 300 LNVDISKPNFELRVAIIEK-----KAEEDGIKVPKNILNLVAKKVTTNIRDLEAAVTKLK 354 Query: 380 FRHSFAPI-LTAEIADELLSHLV-----NTGETKKMRIEDIQRMVAKHYNISRNDLLSNR 433 I + I D+++ ++ NT K+ IE+I++++ + ++ D+ N Sbjct: 355 AHIDLEDIEIDTNIVDKIIKEIIAYENDNTNTPNKINIENIKKVILRELKLTNKDIEGNS 414 Query: 434 RVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV 493 + + + R + YL + T S EIG+ G + H+TVL+++ K++K ++ + + Sbjct: 415 KKPEITKARHIYAYLLRNFTELSTIEIGKIIGGKTHSTVLYSINKIDKDRNKNLEINNLI 474 Query: 494 ELLKRLISE 502 L I++ Sbjct: 475 IELMNKINK 483 >gi|161869312|ref|YP_001598479.1| chromosomal replication initiation protein [Neisseria meningitidis 053442] gi|161594865|gb|ABX72525.1| chromosomal replication initiator protein [Neisseria meningitidis 053442] Length = 468 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 133/393 (33%), Positives = 211/393 (53%), Gaps = 16/393 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 R LP + + P+ S + ++ + L + F T +EG Sbjct: 88 RMRNLPHEPRHTAEPASRPESEVLAKARTDAQRDAEEAR--YEQTNLSPDYTFDTLVEGK 145 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 NR+A AAQ+IAE Y NP F++ S GLGKTHL+QAI N +K +P+ +V Y Sbjct: 146 GNRLAAAAAQAIAESPGQSY-----NPFFLYGSTGLGKTHLVQAIGNELLKNRPDAKVRY 200 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + ++ ++ F A+R+N K + DLL+IDD+QF++GK EF +L N + Sbjct: 201 MHSDDYIRSFMKAVRNNTYDVFKQQYKQYDLLIIDDIQFIKGKDRTMEEFFYLYNHFHNE 260 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 KQ++ D P+++E +D R++SR G+++ L + EMR +IL+ + E + Sbjct: 261 KKQLILTCDVLPAKIEGMDDRLKSRFSWGLTLELEPPELEMRIAILQK-----KAEAAGI 315 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKK 408 +I +E + +A + ++ REL+GAFN++ F P++ ++A L ++ K Sbjct: 316 SIEDEAALFIANLIRSNVRELEGAFNRVGASSRFMNRPVIDIDLARTALQDIIAEKH-KV 374 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + + I VAK+Y I +D+L +R R + RPRQVAM L+K +T S P IG FG RD Sbjct: 375 ITADIIIDAVAKYYRIKISDVLGKKRTRNIARPRQVAMSLTKELTTLSLPSIGDSFGGRD 434 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 HTTV+H +R V K+ E D L ++ E L LI Sbjct: 435 HTTVMHGIRAVAKLREEDPELAQDYEKLLILIQ 467 >gi|91200553|emb|CAJ73602.1| similar to replication initiation protein DnaA [Candidatus Kuenenia stuttgartiensis] Length = 495 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 227/470 (48%), Gaps = 29/470 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 C I+ + ++ ++GP + WF+ + S+ ++VP F + W++ + + Sbjct: 50 CSKIWDDILENVREKLGPLRFNLWFKNTRLESIGDAYASIAVPNVFTQMWLQENFSGLLK 109 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + R ++ VR + EK P K ++ K + Sbjct: 110 EDIGRFLKR---SDLDVRFILDNKQEKEIVLPE------------KPDVVDEKGAYTGRK 154 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ + F+ G +NR+A TAA + + + NPLFIH +VG+GKTHLL Sbjct: 155 ALGLNKGLLLEDFVIGPNNRLAYTAALEMIKEEYPP-----FNPLFIHGNVGVGKTHLLV 209 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 I N K Q + VY++AE + F A++ + + RN+D+ LIDD+ FL K Sbjct: 210 GIWNRVRKEQ-TVNAVYMSAEKWTNEFIYALQKGKMESFRQRYRNVDVFLIDDVHFLSNK 268 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 +Q EF H N+L DS+K+++ A+D P ++ L + SR G+ + +Y R Sbjct: 269 QGVQEEFLHTFNALYDSSKRIIFASDAHPKQISQLKENLASRFMSGMVARIERPEYATRL 328 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 IL+ + + EE L ++A S RE++ A L F + Sbjct: 329 LILRT-----KASKYDVYFPEEALEYIAEKFDDSVREVESALVTLTAHARFNDRKIDIAF 383 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 ++L G+ K +++E+I+ V +H+NISR+DL S+R+ +TV PRQ+ MYL K Sbjct: 384 VKDVLKEFF-YGDDKVVKVEEIEGAVLRHFNISRSDLHSSRKAKTVSFPRQICMYLIKNQ 442 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +IG FG++ HTTV+ A++K+ + L+ D K +++L I + Sbjct: 443 LDWSYQQIGNYFGNKKHTTVIFAIKKINEELKKDDQFKSFLDMLMEKIKK 492 >gi|91201685|emb|CAJ74745.1| similar to chromosomal replication initiator protein DnaA [Candidatus Kuenenia stuttgartiensis] Length = 495 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 132/470 (28%), Positives = 227/470 (48%), Gaps = 29/470 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 C I+ + ++ ++GP + WF+ + S+ ++VP F + W++ + + Sbjct: 50 CSKIWDDILENVREKLGPLRFNLWFKNTRLESIGDAYASIAVPNVFTQMWLQENFSGLLK 109 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + R ++ VR + EK P K ++ K + Sbjct: 110 EDIGRFLKR---SDLDVRFILDNKQEKEIVLPE------------KPDVVDEKGAYTGRK 154 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 L+ + F+ G +NR+A TAA + + + NPLFIH +VG+GKTHLL Sbjct: 155 ALGLNKGLLLEDFVIGPNNRLAYTAALEMIKEEYPP-----FNPLFIHGNVGVGKTHLLV 209 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 I N K Q + VY++AE + F A++ + + RN+D+ LIDD+ FL K Sbjct: 210 GIWNRVRKEQ-TVNAVYMSAEKWTNEFIYALQKGKMESFRQRYRNVDVFLIDDVHFLSNK 268 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 +Q EF H N+L DS+K+++ A+D P ++ L + SR G+ + +Y R Sbjct: 269 QGVQEEFLHTFNALYDSSKRIIFASDAHPKQISQLKENLASRFMSGMVARIERPEYATRL 328 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEI 392 IL+ + + EE L ++A S RE++ A L F + Sbjct: 329 LILRT-----KASKYDVYFPEEALEYIAEKFDDSVREVESALVTLTAHARFNDRKIDIAF 383 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 ++L G+ K +++E+I+ V +H+NISR+DL S+R+ +TV PRQ+ MYL K Sbjct: 384 VKDVLKEFF-YGDDKVVKVEEIEGAVLRHFNISRSDLHSSRKAKTVSFPRQICMYLIKNQ 442 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S+ +IG FG++ HTTV+ A++K+ + L+ D K +++L I + Sbjct: 443 LDWSYQQIGNYFGNKKHTTVIFAIKKINEELKKDDQFKSFLDMLMEKIKK 492 >gi|297243220|ref|ZP_06927155.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis AMD] gi|296888754|gb|EFH27491.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis AMD] Length = 537 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 131/529 (24%), Positives = 234/529 (44%), Gaps = 77/529 (14%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ + L++ + WF+ +K ++ + L V + ++N + Sbjct: 15 VWSNTLTVLQHNALLTARD-KGWFEGVKPEAIFGTTIVLCVSNAETQQALQNELNSPLLT 73 Query: 96 LFQEEHSR--------IQGVEILVRSVALPS----------------------------- 118 + + + E ++ PS Sbjct: 74 ALKICTGKDMFPAFRIVPQSEYQEKTAQSPSNSLSHQAQNNTILNKAVTDNTVLPVDNIS 133 Query: 119 VEKTASSPSITK--LSPINTN----------------ISKSPIILGKQTISPVFGSPLDS 160 V + PS+T +SP+ + ++ ++ + L++ Sbjct: 134 VSASNDLPSVTANDVSPVQPDFDHATGISTLQQTDISTEQAAQQKMPVSVQRDAITHLNT 193 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 F TF+ G SNR A T A ++AE NPL I+ GLGKTHLL AI N + Sbjct: 194 CATFDTFVPGDSNRFARTVALAVAEGSGRD-----FNPLCIYGGSGLGKTHLLNAIGNYA 248 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQGKL 275 + + +L+V Y+T+E F F A++ + R +D+LLIDD+QFL GK Sbjct: 249 LVKDSSLKVRYVTSEEFTNEFIEALQTPNQSQGQIADFNRRYREVDVLLIDDIQFLGGKE 308 Query: 276 -IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFS 334 +F H NSL + K++V A+D P L+ + R+ SR + G++V + D E R + Sbjct: 309 ATLEQFFHTFNSLYQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDIKPPDLETRIA 368 Query: 335 ILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIA 393 IL+ +++ N+ +VL +A T + REL+GA ++ S ++ +A Sbjct: 369 ILRMMASMNHC-----NVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSKALA 423 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 ++ L T ++R DI VA++++++ ++L+ +R + V RQ+AMYL++ MT Sbjct: 424 EQALQDFFATDI--EVRPTDIISQVAQYFHMTFDELVGRQRTKNVALARQIAMYLAREMT 481 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S +IG FG RDHTTV+HA +V ++ + V L + + Sbjct: 482 SMSLVDIGEVFGGRDHTTVMHAYTRVSGEMQEKQEIYNYVMELTVRLKQ 530 >gi|258544743|ref|ZP_05704977.1| ATPase involved in DNA replication initiation [Cardiobacterium hominis ATCC 15826] gi|258520014|gb|EEV88873.1| ATPase involved in DNA replication initiation [Cardiobacterium hominis ATCC 15826] Length = 444 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 137/474 (28%), Positives = 225/474 (47%), Gaps = 39/474 (8%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E + ++ V + D + + L + L P F IK Sbjct: 5 EAQAQLLWESVLDMMAPLCAKDDM-TVLRSLALRAQSEKQWTLLAPNKFACEQIKKSLFV 63 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 T+ + + + +EI A+ SP N + +P Sbjct: 64 TLDMALRNKGIKEVKLEI------------AAAPELFASASPAQRNAAPAP--------- 102 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 F S L+S + F F+ SN A AA+ + S G+ NPL I+ GLGK+H Sbjct: 103 --FESNLNSDYQFHNFVAAPSNNEAFAAAERV----SGGHFFADSNPLLIYGGTGLGKSH 156 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 L+ A NA + V+Y+ AE ++ F +A+ + LR++D LLIDD+QFL Sbjct: 157 LMHAAGNALRRNGRTA-VMYMNAEQYVNEFLAALAGKTQKAFSNRLRSVDALLIDDVQFL 215 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H N L+D +Q++ DR P E+E L+ R++SR G++V + + E Sbjct: 216 GGKTQSQAEFFHTFNELIDKKRQIIMTCDRYPKEIEGLEARLKSRFGAGLTVSIRAPEPE 275 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF---API 387 RF+ILK S+ ++ + ++V +A + ++ R+L+GA +++F+ Sbjct: 276 TRFAILK-----SKAKEQNFPLPDDVAYFIAENIESNVRDLEGALKKVIFQCQVLKKNEP 330 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 T IA L+ L+ K+ +E+IQR+VA+++ IS +LLS+ R +T V PR +AM Sbjct: 331 ATVPIAQAALADLLQAQ-KKQTSVENIQRVVAQYFGISEAELLSSSRKKTFVEPRMIAMA 389 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 L++ +T + F +DHTTV HA VE +TD ++E E +K +I+ Sbjct: 390 LTRDLTDMVLQAVAEAFNRKDHTTVKHATESVESRKKTDPRFREEYENIKTIIT 443 >gi|221218113|ref|ZP_03589579.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 72a] gi|224533619|ref|ZP_03674208.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi CA-11.2a] gi|225548587|ref|ZP_03769634.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 94a] gi|225549615|ref|ZP_03770581.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 118a] gi|221192061|gb|EEE18282.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 72a] gi|224513292|gb|EEF83654.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi CA-11.2a] gi|225369892|gb|EEG99339.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 118a] gi|225370617|gb|EEH00053.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 94a] Length = 486 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 129/496 (26%), Positives = 241/496 (48%), Gaps = 35/496 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS--------------ITKLSPINT 136 + I ++ + + + ++ +P+ T PI Sbjct: 60 KKIKEILIKNGYNNIVIVFTNQPPKTHFNKQETKNPALNETFSKFDKLKEKTTSKEPIQN 119 Query: 137 NISKSPIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + + + K+ P F +P L R+ F FI GS+N++A A+ SI++ Y Sbjct: 120 IQDRIKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGSNNKLAYNASLSISKNPGKKY--- 176 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 177 --NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKKFK 234 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++ Sbjct: 235 KKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLK 294 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L+ Sbjct: 295 SRFTRGLNVDISKPNFELRAAIVEK-----KAEEDGINVPKNILNLVAQKVTTNVRDLEA 349 Query: 374 AFNQLVFRHSFAPI-------LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 A +L I + K+ IE+I++++ + I+ Sbjct: 350 AVTKLKAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKITH 409 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 410 KDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNND 469 Query: 487 ITLKKEVELLKRLISE 502 + + L I + Sbjct: 470 KEINNLITELMNKIKK 485 >gi|260890880|ref|ZP_05902143.1| DNA replication initiator protein, ATPase [Leptotrichia hofstadii F0254] gi|260859433|gb|EEX73933.1| DNA replication initiator protein, ATPase [Leptotrichia hofstadii F0254] Length = 451 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 120/477 (25%), Positives = 229/477 (48%), Gaps = 38/477 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 ++ E ++ + +K +V + ++F ++ + + L + ++ ++ Sbjct: 1 MDIEKLWEKIKKIMKKRVNEAEFEAFFNNVEVGKMEGGKLTLVCNSKLIQQNMEKH-KSQ 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + + + + V+ + + + S S I Sbjct: 60 MEDIVEIVTDEEVTINFEVKQQDVMTYKPETHSFSKDTKEKIQ----------------- 102 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 VF + L+ + F+ G ++++A A ++ + Y NPLFI+ S GLGKTHL Sbjct: 103 VFHTGLNPKHRLDNFVVGENSKLAYNACLAVVNNPTPVY-----NPLFIYGSSGLGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QA+ NA ++ P+ RV Y T+E F F + + +D+ R +D+LL+DD+QF + Sbjct: 158 MQAVGNAILENNPSKRVYYSTSEEFSNEFFKVLNSGRIQHFRDTFRALDVLLLDDIQFFE 217 Query: 273 G------KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 ++ EF H N L + KQ++ +D+ P E+++L R+ SR G++V + Sbjct: 218 KVFGRGEGTVEEEFFHTFNKLQELGKQIIMISDKSPKEIKNLSKRLESRFLSGLTVEIQS 277 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FA 385 YE R ILKN + I++ +L +++ ++ T+ REL+G L R Sbjct: 278 PGYETRMMILKNMAKTQ-----GIEIDDSILEYISDSLDTNVRELEGTLTNLNARAKLLN 332 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T ++ E+L H V ++K + + + +++ Y +S D+ S +R + +V RQ+A Sbjct: 333 EQITMQLVQEMLMHNVKREQSK-VTAKKVIEIISAQYGVSVTDMKSKKRQKKIVETRQIA 391 Query: 446 MYLSKIM--TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL K S IG FG +DH+TV+ ++RK++K + D+ +KE+E L + I Sbjct: 392 MYLLKNNDELDLSLTAIGGLFGGKDHSTVISSIRKIDKKTKEDVVFRKEIEALNKKI 448 >gi|237784638|ref|YP_002905343.1| chromosomal replication initiator protein [Corynebacterium kroppenstedtii DSM 44385] gi|237757550|gb|ACR16800.1| chromosomal replication initiator protein [Corynebacterium kroppenstedtii DSM 44385] Length = 605 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 130/405 (32%), Positives = 207/405 (51%), Gaps = 14/405 (3%) Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG-SPLD 159 + E + V + +P+ T P N + +Q P S L+ Sbjct: 209 YPDATPTEPAYSNSGDAHVGNSYDTPAETAPQPWNEGYINNARPQRRQEQKPDSERSWLN 268 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + F + G NRV AA ++AE + Y NPLFI GLGKTH+L AI + Sbjct: 269 ENYTFDNLVAGEGNRVVRAAAIAVAENPAQAY-----NPLFIWGGSGLGKTHILHAIGHR 323 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQH 278 +++ +PNLRV Y++ E + + ++IR+N + K R+ D+LL+DD+QFL GK Q Sbjct: 324 ALELRPNLRVRYVSIEEYTNEWINSIRNNRGEDFKRKYRSFDILLVDDIQFLAGKPETQI 383 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 EF H N+L + KQ+V +DR P EL L+PR+R+R Q G + + D E R +IL+ Sbjct: 384 EFFHNFNALHGAQKQIVLCSDRSPKELTELEPRLRTRFQWGFTQDIQKPDLETRIAILR- 442 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELL 397 + E + EVL +A S REL+GA N+++ S +T E+A + L Sbjct: 443 ----LKAERENAQVPSEVLSFIAEQKAESVRELEGALNKVLIVSSIQHTPVTLEMARDQL 498 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 LV ++ I + A+++N++ DL + R + RQVAMYL + +T S Sbjct: 499 QDLVAPEVV-EITAPTIMSVTAEYFNLTTADLTGPGKARPIAHARQVAMYLCRELTDLSL 557 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 P++G +FG RDHTT ++A RK+ K + + + ++ + I + Sbjct: 558 PKVGNKFGGRDHTTAMYAERKIRKEMSEKRSTNEAIQEITARIKD 602 Score = 50.0 bits (118), Expect = 8e-04, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 45/141 (31%), Gaps = 19/141 (13%) Query: 37 SIFTIVSSRLKN--------------QVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLK 82 + + V ++L ++ P +W ++ ++ + +S P K Sbjct: 19 NTWNNVVAQLMAMNPREDIPGQAPGTRITPQD-KAWLKQAAPVGLIGGVAVISTPNRTAK 77 Query: 83 AWIKNRYLETITKLFQEEHSRIQGVEILVRSVALP----SVEKTASSPSITKLSPINTNI 138 + + + + I+ + I + S A S E + P + P Sbjct: 78 SVFERKLGDIISAELTAAIGEPIKLAISINSAATETDDSSAEPPRTEPPRAETPPTQPRT 137 Query: 139 SKSPIILGKQTISPVFGSPLD 159 ++S + S S L+ Sbjct: 138 TQSRPTETRSAESYHDFSQLN 158 >gi|197106892|ref|YP_002132269.1| chromosomal replication initiator protein DnaA [Phenylobacterium zucineum HLK1] gi|196480312|gb|ACG79840.1| chromosomal replication initiator protein DnaA [Phenylobacterium zucineum HLK1] Length = 484 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 163/472 (34%), Positives = 246/472 (52%), Gaps = 21/472 (4%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 ++T LK ++G + SW + + L T + WI+ I +L+ Sbjct: 23 VWTKTCQVLKRELGEATFGSWLGQAALRESGDEVC-LVAATGVARDWIRRHAWRRIGELW 81 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + +++ R VE + P N + + + ++PV Sbjct: 82 AQNDPLGRRLDLKSRM----EVESVGAVAPAPAAPPRAANAEPAAEVFEVEAVAPVAARQ 137 Query: 158 -----LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L RF F TF+ G +N A A+ +A + NP+ H G GKTHL Sbjct: 138 GRLQGLQERFSFDTFVSGPANEFAFAVARRVA-----TWADGHFNPVLFHGPYGFGKTHL 192 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L A+A +++ P+ RVVYLTAE F F A++D KD LRN DLLLIDD+ F+ Sbjct: 193 LNALAWEAMRTAPDKRVVYLTAERFTTTFVKALQDRQTQAFKDDLRNADLLLIDDVHFVA 252 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q E H L +L++ ++VV ADR P+EL ++PR+RS LQ G+ + D + Sbjct: 253 GKTQTQEELFHTLIALVEDGRRVVLTADRSPTELSEMEPRLRSHLQAGLVCGIEPADRSL 312 Query: 332 RFSIL-KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI--L 388 R IL + L ++ + + EVL +A T S REL+GA N LV R I L Sbjct: 313 RLGILERKLLTLATQGRFHPSARPEVLQFLADRFTDSVRELEGALNTLVARVG-GDIARL 371 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T + A +L + + +K+ ++ IQ+ VA+HY + + DL+S RR R V RPRQVAM+L Sbjct: 372 TLDEAQAILRPHL-SCTERKVTVDMIQKTVAEHYALKQADLISERRARAVARPRQVAMWL 430 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +K +T RS P+IGRRFG RDHTTVLHAVR++E + D + +++++L R + Sbjct: 431 AKQITTRSLPDIGRRFGGRDHTTVLHAVRRIEALKAEDAAIARDIDVLLRKL 482 >gi|94495384|ref|ZP_01301964.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. SKA58] gi|94424772|gb|EAT09793.1| chromosomal replication initiator protein DnaA [Sphingomonas sp. SKA58] Length = 466 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 158/470 (33%), Positives = 252/470 (53%), Gaps = 30/470 (6%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLET 92 +S ++++ + L+ VG ++ W + + + L V T+F ++ ++ + Sbjct: 21 LDSAWSVIRTGLRRDVGARLFDQWLKPARLGDYCPESQTLDLLVATDFSANFVSGQFGDR 80 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + A P + +++P +I P++ Sbjct: 81 LRMAWRSAG--------VGVREVRVRRAPDACGPRLLEVAP---SIQTEPVME-----EA 124 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + S R F+ G +NR+A +AAQ++A G R PLFIH G GKTHL Sbjct: 125 IVASNFQPRHRLDDFVVGDTNRLAWSAAQAMA-----GEAQPRFTPLFIHGGTGQGKTHL 179 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L IA A P V+Y++AE FM F +A+R N + K LR LLLIDD+QF+ Sbjct: 180 LHGIAAAFSAHSPKAPVLYMSAERFMMEFVNAMRANETMAFKARLRAARLLLIDDIQFIA 239 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H +N L+DS ++V ADR P LES+D RI SRL GG+ + D ++ Sbjct: 240 GKGSTQEEFLHTINDLIDSGARIVVTADRAPQMLESIDARILSRLAGGLVADIRPADLDL 299 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+++ A++ + + + V+ +AR++ ++ REL+GAFN+LV + Sbjct: 300 RLAILESKRALAG----DMIVPDMVIDFLARSIRSNVRELEGAFNKLVAYGQLTGRAVDL 355 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + A ++L+ V +++ +++IQ+ A H+ I ++ S RR R V RPRQVAMYL+K Sbjct: 356 DFAQQMLADAVRAN-ARRITVDEIQKACAAHFKIDPAEMRSKRRARAVARPRQVAMYLAK 414 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MTPRS PEIGR FG RDH+TV+HAVR +E + ET + +V L+RL+ Sbjct: 415 KMTPRSLPEIGRIFGGRDHSTVIHAVRTIEALRETSPDMDADVRALQRLL 464 >gi|15594782|ref|NP_212571.1| chromosomal replication initiator protein (dnaA) [Borrelia burgdorferi B31] gi|216264677|ref|ZP_03436669.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 156a] gi|224532482|ref|ZP_03673107.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi WI91-23] gi|226321067|ref|ZP_03796609.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 29805] gi|461940|sp|P33768|DNAA_BORBU RecName: Full=Chromosomal replication initiator protein DnaA gi|454039|gb|AAA58941.1| DnaA protein [Borrelia burgdorferi] gi|2688358|gb|AAB91515.1| chromosomal replication initiator protein (dnaA) [Borrelia burgdorferi B31] gi|215981150|gb|EEC21957.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 156a] gi|224512554|gb|EEF82930.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi WI91-23] gi|226233477|gb|EEH32216.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 29805] Length = 486 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 128/496 (25%), Positives = 240/496 (48%), Gaps = 35/496 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS--------------ITKLSPINT 136 + I ++ + + + S ++ +P+ T I Sbjct: 60 KKIKEILIKNGYNNIVIVFTNQPPKTHSNKQETKNPALNETFSKFDKLKEKTTSKEAIQN 119 Query: 137 NISKSPIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + + + K+ P F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 IQDRIKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY--- 176 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 177 --NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKKFK 234 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++ Sbjct: 235 KKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLK 294 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L+ Sbjct: 295 SRFTRGLNVDISKPNFELRAAIVEK-----KAEEDGINVPKNILNLVAQKVTTNVRDLEA 349 Query: 374 AFNQLVFRHSFAPI-------LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 A +L I + K+ IE+I++++ + I+ Sbjct: 350 AVTKLKAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKITH 409 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 410 KDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNND 469 Query: 487 ITLKKEVELLKRLISE 502 + + L I + Sbjct: 470 KEINNLITELMNKIKK 485 >gi|223983629|ref|ZP_03633807.1| hypothetical protein HOLDEFILI_01088 [Holdemania filiformis DSM 12042] gi|223964396|gb|EEF68730.1| hypothetical protein HOLDEFILI_01088 [Holdemania filiformis DSM 12042] Length = 458 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 129/479 (26%), Positives = 231/479 (48%), Gaps = 38/479 (7%) Query: 31 LEVNCESIFTIVSSRL------KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAW 84 ++ I+ + + + ++ ++ +F K + + VP + Sbjct: 4 MDSYLSDIWKRTLTLILEKGKQQEKLDNLIFNQFFSDSKLMDLDEKKALVVVP-----GY 58 Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPII 144 I+ + ++ +E S +Q +I V ++K + K Sbjct: 59 IQQTIMMQNKEIVEEAISEVQERKISCEIVMESQLQKIRPMAAKKKAP------------ 106 Query: 145 LGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHAS 204 I+ + + L + F F+ G SNR + +AA + A NPLFI+ + Sbjct: 107 ----AITGLNTTNLIQDYTFDNFVVGGSNRESHSAALACAYNPGQ-----FFNPLFIYGN 157 Query: 205 VGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLL 264 GLGKTHLL AI N + P+ +V Y T+E F+ ++I++ K+ + ++D+LL Sbjct: 158 SGLGKTHLLNAIGNYVSEHAPDKKVYYTTSEDFVNAVVNSIKNGQIQEFKEEMNDLDVLL 217 Query: 265 IDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 +DD+QFL GK F ++ N L+++ KQ+ +DR P+E++ L+ R+ SR G+SV Sbjct: 218 VDDIQFLAGKEKSHETFFYIFNELVNNKKQICLTSDRHPTEIKGLEERLISRFSSGLSVG 277 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH- 382 + ++E +ILK +L Q DP + I+++VL ++A + R+L+GA N+L+F Sbjct: 278 VDSPEFETSVAILKVKLE-KQSVDPSI-IDDDVLAYIASNFSQDVRKLEGALNRLLFYSI 335 Query: 383 --SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVR 440 S + + + A T + + I R VA +Y +++ L+S R + + Sbjct: 336 NFSNSTRIDFKTAVSAFRGQAQTIDKNDLTASKIIRCVADYYGLTKLQLVSKTRTKNIAT 395 Query: 441 PRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 R +AMYL + + +IG FG RDH+TV+ A KVEK L+ D T ++ V L++L Sbjct: 396 ARHMAMYLCRKHLDMPYVKIGDEFGKRDHSTVMSACEKVEKGLKNDETYRQAVGELEKL 454 >gi|315225750|ref|ZP_07867538.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens DSM 10105] gi|315119882|gb|EFT83014.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens DSM 10105] Length = 613 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 124/383 (32%), Positives = 199/383 (51%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 PS T+ + P + QT + L+ F TF++G+SNR A +AA +AE Sbjct: 236 PSENLPFEEVTDEDEGPKLQSAQTARNAI-THLNPFATFDTFVQGTSNRFAKSAAVMVAE 294 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA- 244 TV NPLFI+ GLGKTHLL AI N +++ P + V Y+TAE F+ F SA Sbjct: 295 SPG----TVDYNPLFIYGESGLGKTHLLNAIGNYVLRQDPTMIVRYVTAEEFVNDFVSAL 350 Query: 245 ----IRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 + N RN+D+LL+DD+QF +G +F H N L+ + KQ+V A+D Sbjct: 351 AAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETMEQFFHTFNELVSTGKQIVIASDV 410 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P+ L+ + R+R+R G+ V + + + R +IL+ + + + + +VL ++ Sbjct: 411 APNHLKGFNERLRTRFNNGLVVDVAPPEKDTRLAILR-----LKASNSNIEVPADVLDYI 465 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A +T S REL+GA ++ + +T +A++ L N+ ++ +I VA Sbjct: 466 ADKITDSVRELEGALTRVTAIATLNNQPVTHSLAEQTLHDFFNSDV--EVTPTNIITNVA 523 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HY ++ +D++ R + V RQV+MYL + MT S +IG FG RDH+TV+HA +KV Sbjct: 524 QHYQLTFDDIVGPSRTKNVAEARQVSMYLIREMTGLSLVDIGEVFGGRDHSTVMHACKKV 583 Query: 480 EKMLETDITLKKEVELLKRLISE 502 + L V + I + Sbjct: 584 ANEISEKRNLYNNVNEITMRIKQ 606 >gi|309811383|ref|ZP_07705170.1| chromosomal replication initiator protein DnaA [Dermacoccus sp. Ellin185] gi|308434690|gb|EFP58535.1| chromosomal replication initiator protein DnaA [Dermacoccus sp. Ellin185] Length = 501 Score = 368 bits (944), Expect = 2e-99, Method: Composition-based stats. Identities = 144/502 (28%), Positives = 238/502 (47%), Gaps = 46/502 (9%) Query: 33 VNCESIFTIVSSRL-KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 V+ E + + K+ +G ++ +F +L + V LSVP + K ++ E Sbjct: 7 VDYERTWHAALEDMDKHGIGSRD-RAYLNLTRFVGLLGDNVLLSVPFDQTKRMLEGPLRE 65 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKT----------------------------A 123 + K ++ + V I V +V Sbjct: 66 PVAKALSDQLGQQVRVAISVDESLQAAVRDLDDDGDASDENTSAATESDDGTLGFTMPGQ 125 Query: 124 SSPSITKLSPINTNISKSPIILGKQTISP--VFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 +P TK P +S +P L+ ++ F TF+ G SNR A AA Sbjct: 126 GAPRPTKADPGVVLPPRSTGYQRDAAAAPSDTEAPRLNPKYTFDTFVIGESNRFAHAAAI 185 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 +IAE Y NPLFIH GLGKTHLL AI + P LRV Y+++E F F Sbjct: 186 AIAEEPGQAY-----NPLFIHGDSGLGKTHLLHAIGHYVHDYHPKLRVRYVSSEEFTNDF 240 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDM-QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAAD 299 ++IRD+ A + R+ +L+ D QFLQGK Q EF H N+L + KQ+V +D Sbjct: 241 VNSIRDDRAATFQRRYRDDVDVLLIDDIQFLQGKEQTQEEFFHTFNALHSTGKQIVLTSD 300 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 +PP +L + R+RSR + G++ + + E R +IL+ + + ++I ++VL Sbjct: 301 QPPEKLTTFADRMRSRFKSGLTTDVHPPELETRIAILRKKANAER-----MDIGDDVLEL 355 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A ++T+ REL+GA ++ S + A +L +V + ET ++ + I Sbjct: 356 IASKISTNIRELEGALIRVAAYASLQKEPVDRAKAAFVLKDVVPS-ETGQITVGHIIAET 414 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A ++ ++ +D+ R R + RQ+AMYLS+ +T SFP++G+ FG RDHTTV+HA +K Sbjct: 415 AVYFGVTVDDIKGPSRSRNLTMARQIAMYLSRELTEHSFPQLGQHFGGRDHTTVMHAEKK 474 Query: 479 VEKMLETDITLKKEVELLKRLI 500 + +++ + ++ L I Sbjct: 475 IRQLIGERRPVYDQITELTTQI 496 >gi|312148000|gb|ADQ30659.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi JD1] Length = 486 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 128/496 (25%), Positives = 240/496 (48%), Gaps = 35/496 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS--------------ITKLSPINT 136 + I ++ + + + S ++ +P+ T I Sbjct: 60 KKIKEILIKNGYNNIVIIFTNQPPKTHSNKQETKNPALNETFSKFDKLKEKTTSKEAIQN 119 Query: 137 NISKSPIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + + + K+ P F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 IQDRIKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY--- 176 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 177 --NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKKFK 234 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++ Sbjct: 235 KKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLK 294 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L+ Sbjct: 295 SRFTRGLNVDISKPNFELRAAIVEK-----KAEEDGINVPKNILNLVAQKVTTNVRDLEA 349 Query: 374 AFNQLVFRHSFAPI-------LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISR 426 A +L I + K+ IE+I++++ + I+ Sbjct: 350 AVTKLKAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKITH 409 Query: 427 NDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETD 486 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ D Sbjct: 410 KDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNND 469 Query: 487 ITLKKEVELLKRLISE 502 + + L I + Sbjct: 470 KEINNLITELMNKIKK 485 >gi|47093227|ref|ZP_00231000.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 4b H7858] gi|47018421|gb|EAL09181.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes str. 4b H7858] Length = 343 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 121/370 (32%), Positives = 196/370 (52%), Gaps = 29/370 (7%) Query: 50 VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEI 109 + Y +W + HS+ N +S P NF++ W++ Y + I + QE R+ V Sbjct: 1 MSKPSYDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQFIANILQEITGRLFDVRF 60 Query: 110 LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIE 169 + + E T P N + + I +GK L+ R+VF TF+ Sbjct: 61 -IDGEQEENFEYTVIKP--------NPALDEDGIEIGKHM--------LNPRYVFDTFVI 103 Query: 170 GSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRV 229 GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL+ A+ + + + N +V Sbjct: 104 GSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHLMHAVGHYVQQHKDNAKV 158 Query: 230 VYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLL 288 +YL++E F F S+IRDN + RN+D+LLIDD+QFL GK Q EF H N+L Sbjct: 159 MYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLAGKEGTQEEFFHTFNTLY 218 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E R +IL+ + + Sbjct: 219 DEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLETRIAILRK-----KAKAD 273 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETK 407 L+I EV++++A + ++ REL+GA ++V S +TA +A E L ++ + +++ Sbjct: 274 GLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITAGLAAEALKDIIPSSKSQ 333 Query: 408 KMRIEDIQRM 417 + I I Sbjct: 334 VITISGISEA 343 >gi|312149106|gb|ADQ29177.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi N40] Length = 486 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 130/499 (26%), Positives = 247/499 (49%), Gaps = 41/499 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS--------------ITKLSPINT 136 + I ++ + + + S ++ +P+ T I Sbjct: 60 KKIKEILIKNGYNNIVIVFTNQPPKTHSNKQETKNPALNETFSKFDKLKEKTTSKEAIQN 119 Query: 137 NISKSPIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + + + K+ P F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 IQDRIKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY--- 176 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 177 --NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKKFK 234 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++ Sbjct: 235 KKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLK 294 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L+ Sbjct: 295 SRFTRGLNVDISKPNFELRAAIVEK-----KAEEDGINVPKNILNLVAQKVTTNVRDLEA 349 Query: 374 AFNQLVFRHSFAPILTAEIADELLSHLVNTG----------ETKKMRIEDIQRMVAKHYN 423 A +L + + EI E++ ++ K+ IE+I++++ + Sbjct: 350 AVTKLKA---YIDLDNIEIDIEIVEKIIKEIIIYEKETTYEPNNKINIENIKKILLRELK 406 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 I+ D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ Sbjct: 407 ITHKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDR 466 Query: 484 ETDITLKKEVELLKRLISE 502 D + + L I + Sbjct: 467 NNDKEINNLITELMNKIKK 485 >gi|257124815|ref|YP_003162929.1| chromosomal replication initiator protein DnaA [Leptotrichia buccalis C-1013-b] gi|257048754|gb|ACV37938.1| chromosomal replication initiator protein DnaA [Leptotrichia buccalis C-1013-b] Length = 451 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 125/477 (26%), Positives = 233/477 (48%), Gaps = 38/477 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N ++ + +K +V + ++F+ ++ + N + L + ++ + +Y Sbjct: 1 MNVGKLWEKIKKIMKKRVSEAEFEAFFKNVEATKLEDNKLTLVCNSKLIQQNV-GKYKGQ 59 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + I ++ ++ + S + S + S Sbjct: 60 MEEIAEIITDEIITIDFEIKKQDIMSYKPEIHS-----------------FSRESKEKSS 102 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 + L+ + F FI G ++++A A ++ + Y NPLFI+ S GLGKTHL Sbjct: 103 AIYTGLNPKHRFDNFIVGENSKLAYNACLAVVNNPTPVY-----NPLFIYGSSGLGKTHL 157 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 +QA+ N ++ PN RV Y T+E F F + + +D+ R +D+LL+DD+QF + Sbjct: 158 MQAVGNEILENNPNKRVYYSTSEEFANEFFKVLNGGRIQHFRDTFRALDVLLLDDIQFFE 217 Query: 273 G------KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 ++ EF H N L + KQ++ +D+ P E+++L R+ SR G++V + Sbjct: 218 KVFGRGEGTVEEEFFHTFNKLQELGKQIIMISDKSPKEIKNLSKRLESRFLSGLTVEIQS 277 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FA 385 +E R ILKN + I++ +L +++ ++ T+ REL+G L R Sbjct: 278 PGFETRMMILKNMAKTQ-----DIEIDDSILEYISDSLNTNVRELEGTLTNLNARAKLLN 332 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 +T ++ E+L H V ++K + + + ++ Y +S ND++S +R + VV RQ+A Sbjct: 333 EKITLQLVQEMLMHNVKREQSK-ITAKKVMEQISSQYGVSINDMISKKRQKKVVETRQIA 391 Query: 446 MYLSKIM--TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL K S IG FG +DH+TV+ ++RKVEK D+ KKE+++L + I Sbjct: 392 MYLLKNNDDLDLSLTAIGGLFGGKDHSTVISSIRKVEKKTREDVLFKKEIDMLNKKI 448 >gi|115372312|ref|ZP_01459622.1| chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] gi|115370777|gb|EAU69702.1| chromosomal replication initiator protein DnaA [Stigmatella aurantiaca DW4/3-1] Length = 388 Score = 367 bits (942), Expect = 3e-99, Method: Composition-based stats. Identities = 135/417 (32%), Positives = 219/417 (52%), Gaps = 37/417 (8%) Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 + Y + + V V + P + +++ +P+ Sbjct: 3 DHYRALLESTLARVGEGLGRVAYEV-----------------VEAPPPSVHLAPTPVTAT 45 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 P L RF F TF+ SN++ AA ++A+ H Y NPL+I+ G Sbjct: 46 NAMRPP----RLSPRFTFGTFVVADSNQLPAAAAAAVADKPGHHY-----NPLYIYGGTG 96 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLI 265 LGKTHLL A+ N +R P RVVYL++E F + ++R++ + R+ D+LLI Sbjct: 97 LGKTHLLHAVGNLIWERNPAQRVVYLSSEQFTNEYVESVREHRMTEFRRKFRDECDVLLI 156 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL + Q EF + N+L + K +V +D PSE+ L+ R+RSR G+ + Sbjct: 157 DDIQFLGKREETQKEFFYTFNTLYEQNKAIVLTSDTVPSEIPGLEDRLRSRFAMGLLTDI 216 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 YE R +IL+ + E L + ++V +A+ + + REL+GA +L HS Sbjct: 217 REPSYETRVAILQK-----KAEAEGLGLPDDVAHFIAKHIQKNVRELEGALVKLSAIHSL 271 Query: 385 API-LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + +T E A ++L ++ T ++ + +E IQR VA++Y ++ L +RR + + RQ Sbjct: 272 SRLPVTVEFAAQVLKDILPTHQS--VDVESIQREVARYYKVTVEALREDRRHKALAHARQ 329 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 VAMYLS+ +T SFPEI RF ++DH+TV+ AVRKVE + ETD LK+E++ L+ + Sbjct: 330 VAMYLSRKLTKSSFPEIASRF-NKDHSTVISAVRKVEGLRETDAGLKRELDELEAKL 385 >gi|294786219|ref|ZP_06751473.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens F0305] gi|294485052|gb|EFG32686.1| DNA-directed DNA replication initiator protein [Parascardovia denticolens F0305] Length = 531 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 124/383 (32%), Positives = 199/383 (51%), Gaps = 18/383 (4%) Query: 126 PSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAE 185 PS T+ + P + QT + L+ F TF++G+SNR A +AA +AE Sbjct: 154 PSENLPFEEVTDEDEGPKLQSAQTARNAI-THLNPFATFDTFVQGTSNRFAKSAAVMVAE 212 Query: 186 VDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA- 244 TV NPLFI+ GLGKTHLL AI N +++ P + V Y+TAE F+ F SA Sbjct: 213 SPG----TVDYNPLFIYGESGLGKTHLLNAIGNYVLRQDPTMIVRYVTAEEFVNDFVSAL 268 Query: 245 ----IRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 + N RN+D+LL+DD+QF +G +F H N L+ + KQ+V A+D Sbjct: 269 AAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETMEQFFHTFNELVSTGKQIVIASDV 328 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 P+ L+ + R+R+R G+ V + + + R +IL+ + + + + +VL ++ Sbjct: 329 APNHLKGFNERLRTRFNNGLVVDVAPPEKDTRLAILR-----LKASNSNIEVPADVLDYI 383 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVA 419 A +T S REL+GA ++ + +T +A++ L N+ ++ +I VA Sbjct: 384 ADKITDSVRELEGALTRVTAIATLNNQPVTHSLAEQTLHDFFNSDV--EVTPTNIITNVA 441 Query: 420 KHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKV 479 +HY ++ +D++ R + V RQV+MYL + MT S +IG FG RDH+TV+HA +KV Sbjct: 442 QHYQLTFDDIVGPSRTKNVAEARQVSMYLIREMTGLSLVDIGEVFGGRDHSTVMHACKKV 501 Query: 480 EKMLETDITLKKEVELLKRLISE 502 + L V + I + Sbjct: 502 ANEISEKRNLYNNVNEITMRIKQ 524 >gi|218249778|ref|YP_002374948.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi ZS7] gi|226321746|ref|ZP_03797272.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi Bol26] gi|226735780|sp|B7J203|DNAA_BORBZ RecName: Full=Chromosomal replication initiator protein DnaA gi|218164966|gb|ACK75027.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi ZS7] gi|226232935|gb|EEH31688.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi Bol26] Length = 487 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 124/497 (24%), Positives = 237/497 (47%), Gaps = 36/497 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK-----------------LSP 133 + I ++ + + + S ++ +P++ + + Sbjct: 60 KKIKEILIKNGYNNIVIVFTNQPPKTHSNKQETKNPALNETFSKFDKLKEKTTSKEAIQN 119 Query: 134 INTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTT 193 I I ++ + L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 IQDRIKMYIKKEEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY-- 177 Query: 194 VRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNL 253 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + Sbjct: 178 ---NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKKF 234 Query: 254 KDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 K R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R+ Sbjct: 235 KKKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRL 294 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 +SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L+ Sbjct: 295 KSRFTRGLNVDISKPNFELRAAIVEK-----KAEEDGINVPKNILNLVAQKVTTNVRDLE 349 Query: 373 GAFNQLVFRHSFAPI-------LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNIS 425 A +L I + K+ IE+I++++ + I+ Sbjct: 350 AAVTKLKAYIDLDNIEIDIEIVEKIIKEIIIYEKETTNEPNNKINIENIKKILLRELKIT 409 Query: 426 RNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLET 485 D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ Sbjct: 410 HKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDRNN 469 Query: 486 DITLKKEVELLKRLISE 502 D + + L I + Sbjct: 470 DKEINNLITELMNKIKK 486 >gi|223888775|ref|ZP_03623366.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 64b] gi|223885591|gb|EEF56690.1| chromosomal replication initiator protein DnaA [Borrelia burgdorferi 64b] Length = 486 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 129/499 (25%), Positives = 246/499 (49%), Gaps = 41/499 (8%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 +E + ++I++++ + +K ++ + + WF+ L F + + + +S P F K I+ R+ Sbjct: 1 MEKS-KNIWSLILTEIKKELSEEEFYVWFENLCFLESIGDNIKISTPNLFHKNQIEKRFT 59 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPS--------------ITKLSPINT 136 + I ++ + + + ++ +P+ T I Sbjct: 60 KKIKEILIKNGYNNIVIVFTNQPPKTHFNKQETKNPALNETFSKLDKLKEKTTSKEAIQN 119 Query: 137 NISKSPIILGKQTISPV-FGSP-LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTV 194 + + + K+ P F +P L R+ F FI G +N++A A+ SI++ Y Sbjct: 120 IQDRIKMYIKKEEEEPTNFKNPFLKKRYTFENFIIGPNNKLAYNASLSISKNPGKKY--- 176 Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 NP I+ VGLGKTHLLQ+I N + + NL+++Y+TAE F+ F +I+ + K Sbjct: 177 --NPCLIYGGVGLGKTHLLQSIGNKTEELHHNLKILYVTAENFLNEFVESIKTHETKKFK 234 Query: 255 DSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIR 313 R +D+LLIDD+ LQ K IQ E H N+L + KQ+V DR PSEL + R++ Sbjct: 235 KKYRYLDMLLIDDIHDLQKKEGIQEELFHTFNALYEDNKQLVFTCDRSPSELTNFTDRLK 294 Query: 314 SRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDG 373 SR G++V + ++E+R +I++ + E+ +N+ + +L VA+ VTT+ R+L+ Sbjct: 295 SRFTRGLNVDISKPNFELRAAIVEK-----KAEEDGINVPKNILNLVAQKVTTNVRDLEA 349 Query: 374 AFNQLVFRHSFAPILTAEIADELLSHLVNTG----------ETKKMRIEDIQRMVAKHYN 423 A +L + + EI E++ ++ K+ IE+I++++ + Sbjct: 350 AVTKLKA---YIDLDNIEIDIEIVEKIIKEIIIYEKETTYEPNNKINIENIKKILLRELK 406 Query: 424 ISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKML 483 I+ D+ + + + + R + YL + T S EIG+ G + H+TVL+++ K+++ Sbjct: 407 ITHKDIEGHSKKPEITKARHIYAYLLRNFTELSTVEIGKIIGGKTHSTVLYSINKIDRDR 466 Query: 484 ETDITLKKEVELLKRLISE 502 D + + L I + Sbjct: 467 NNDKEINNLITELMNKIKK 485 >gi|283782562|ref|YP_003373316.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 409-05] gi|298253031|ref|ZP_06976823.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 5-1] gi|283442037|gb|ADB14503.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 409-05] gi|297532426|gb|EFH71312.1| chromosomal replication initiator protein DnaA [Gardnerella vaginalis 5-1] Length = 539 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 132/531 (24%), Positives = 232/531 (43%), Gaps = 79/531 (14%) Query: 38 IFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +++ + L++ + WF+ +K ++ + L V + ++N + Sbjct: 15 VWSNTLTVLQHNALLTARD-KGWFEGVKPEAIFGTTIVLCVSNAETQQALQNELNSPLLT 73 Query: 96 LFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPIIL--------- 145 + + +V SS S++ + N N++K+ I+ Sbjct: 74 ALKICTGKDMFPAFRIVPQSEYQEKAAQNSSNSLSHQAQNNANLNKNKIVTDNTVLPVDN 133 Query: 146 ---------------GKQTISPVFG--------------------------------SPL 158 + P F + L Sbjct: 134 ISVSSSNNLSSVTANNSSPVQPDFDHATGISTLQQTDISTEQAAQQKMPVSVQRDAITHL 193 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 ++ F TF+ G SNR A T A ++AE NPL I+ GLGKTHLL AI N Sbjct: 194 NTCATFDTFVPGDSNRFARTVALAVAEGSGRD-----FNPLCIYGGSGLGKTHLLNAIGN 248 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIR-----DNCALNLKDSLRNIDLLLIDDMQFLQG 273 ++ + +L+V Y+T+E F F A++ + R +D+LLIDD+QFL G Sbjct: 249 YALVKDSSLKVRYVTSEEFTNEFIEALQTPNQSQGQIADFNRRYREVDVLLIDDIQFLGG 308 Query: 274 KL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K +F H NSL + K++V A+D P L+ + R+ SR + G++V + D E R Sbjct: 309 KEATLEQFFHTFNSLYQANKRIVIASDVAPKNLKGFEARLISRFESGLTVDIKPPDLETR 368 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAE 391 +IL+ +++ N+ +VL +A T + REL+GA ++ S ++ Sbjct: 369 IAILRMMASMNHC-----NVPSDVLDLIAERFTENIRELEGALTRVTAVASLSNQPVSKA 423 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 +A++ L T ++R DI VA++++++ ++L+ +R + V RQ+AMYL++ Sbjct: 424 LAEQALQDFFATDI--EVRPTDIISQVAQYFHMTFDELVGRQRTKNVALARQIAMYLARE 481 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 MT S +IG FG RDHTTV+HA +V ++ + V L + + Sbjct: 482 MTSMSLVDIGEVFGGRDHTTVMHAYTRVSGEMQEKQEIYNYVMELTVRLKQ 532 >gi|257461143|ref|ZP_05626241.1| chromosomal replication initiator protein DnaA [Campylobacter gracilis RM3268] gi|257441517|gb|EEV16662.1| chromosomal replication initiator protein DnaA [Campylobacter gracilis RM3268] Length = 442 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 122/467 (26%), Positives = 221/467 (47%), Gaps = 41/467 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETITKLF 97 + S L+ ++ P Y+ + + LKF+ F+ + + +Y I +L Sbjct: 7 QEILSNLEKEILPTEYSRYIKNLKFNDKNSTPEFFIYNATNEFIAKYTQTKYGTKIKELI 66 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +++ +++V+ + + SP K + Sbjct: 67 KKQFGLN---DVIVKITSKAKI---------------------SPKEKVKIISEKPKSTI 102 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L + F FI G SN+ A + S+A+ +R NPLFI+ GLGKTHLLQ+I Sbjct: 103 LSENYNFENFIIGDSNKFAFECSVSVAKEPG-----IRFNPLFIYGPSGLGKTHLLQSIG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N IK V+ +T+E F F +++N K RN D+LLIDD+QFL G+ Sbjct: 158 NYCIK--KGKTVICVTSEQFANDFVFNLKNNSIDKFKQKYRNCDVLLIDDIQFLIGRDKA 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E + N L D Q+V D PP L+ + R+ +R + G+ + + E + +I+ Sbjct: 216 QEELFYTFNELKDKNCQIVLTNDLPPKFLKGFENRLTTRFESGIIANITPPNLETKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 + E+ ++ I +V+ ++A + + RE++GA N+L S +T E Sbjct: 276 NK-----KSEENRVRIPHDVVEYIAANMGDNIREIEGAINKLNAYSSILRTKITLEFTKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L ++ + + +E + +++K N+ ++L S R + VV RQ+ +YL+K +T Sbjct: 331 TLQDQIHQKYS-SVSLEHVIEVISKELNVKPSELKSKTRAKNVVEARQICIYLTKQLTQN 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S P+I F +DH+ + ++K+ ++++TD LK ++E LK I++ Sbjct: 390 SMPKIAAFFNLKDHSAISKNIKKINELIQTDEMLKIKIEELKNKITK 436 >gi|307294072|ref|ZP_07573916.1| chromosomal replication initiator protein DnaA [Sphingobium chlorophenolicum L-1] gi|306880223|gb|EFN11440.1| chromosomal replication initiator protein DnaA [Sphingobium chlorophenolicum L-1] Length = 470 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 148/473 (31%), Positives = 250/473 (52%), Gaps = 27/473 (5%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRY 89 + E+ + + + L+ +GP ++ W + + + L ++F ++ ++ Sbjct: 19 DARLETAWATIRAGLRRDIGPRMFDQWLKAAQLGDYCPESQTLDLLFASDFTANFVSGQF 78 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + + ++ + ++ + +L +P+ + + ++ + Sbjct: 79 GDRLRMAWRCAGAGVRELRLL-------------RAPNAVGPRVLELHQTEEAVSDDTVA 125 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + S R F F+ G +N +A +AAQ++A G R +PLFIH G GK Sbjct: 126 DALPPASNFQPRHGFDGFVTGETNHLAFSAAQAMA-----GEGQPRFSPLFIHGGTGQGK 180 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL AIA P+ V+Y++AE FM F +A+R N + K LR LLLIDD+Q Sbjct: 181 THLLHAIARLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLIDDIQ 240 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 F+ GK Q EF H +N L+DS ++ ADR P L+++DPRI SRL GG+ + Sbjct: 241 FIAGKGSTQEEFLHTINDLIDSGARIAITADRAPQMLDAIDPRILSRLAGGLVADIRPAG 300 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-API 387 ++R +IL+ + AI+ + + V+ +AR++ ++ REL+GAFN+L+ Sbjct: 301 LDLRLAILEAKRAIAG----DPPVPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTGRS 356 Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 + E A +L+ V +++ +++IQ+ A HY I ++ S RR R V RPRQVAMY Sbjct: 357 IDLEFAQAMLADAVRAN-ARRITVDEIQKACAAHYKIDAAEMRSKRRARAVARPRQVAMY 415 Query: 448 LSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 L+K MTPRS PEIGR FG RDH+TV+HAVR +E + +++ + ++ L+R + Sbjct: 416 LAKKMTPRSLPEIGRIFGGRDHSTVIHAVRTIEGLRQSNPDIDADIRALQRQL 468 >gi|315639363|ref|ZP_07894525.1| DNA-directed DNA replication initiator protein [Campylobacter upsaliensis JV21] gi|315480689|gb|EFU71331.1| DNA-directed DNA replication initiator protein [Campylobacter upsaliensis JV21] Length = 439 Score = 366 bits (940), Expect = 5e-99, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 233/465 (50%), Gaps = 39/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + + LK + + Y ++ LKF+ + + + P FL +I+ +Y E I ++ Sbjct: 4 SEILNILKKDLKEEEYKNYITHLKFNEKQSKADSLIFNAPNEFLAKFIQTKYAEKIAYIY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I T+ SK+ + I + + Sbjct: 64 EAQSGNKAKISIQ-----------------------SQTHKSKNSTKIDIAHIK-MQSTI 99 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A +++++ D G NP+FI+ GLGKTHLLQA+ Sbjct: 100 LNPSFTFDSFVVGGSNQYAYATCKAVSQKDKLG---KLYNPIFIYGPTGLGKTHLLQAVG 156 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NA ++ +V+Y T+E F+ F S I + ++ +N D+LLIDD+QFL I Sbjct: 157 NACLEM--GKKVIYATSENFINDFNSHIINKTMDKFQEKYQNCDVLLIDDVQFLGKTDKI 214 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q +F + N + D + Q++ +D PP+ L+ + R++SR G+ + E + +I+ Sbjct: 215 QEKFFFIFNEIRDQSGQIIMTSDNPPNMLKGITDRLKSRFANGIIADITPPQLETKIAII 274 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 + + E ++N++ E++ ++A + + RE++G L ++ E A E Sbjct: 275 RKKC-----EFNEVNLSNEIISYLATAMGDNIREIEGMITNLNAYSRLINQEISLEFAKE 329 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + IEDI +V+K +N+ +D+ S +R + +V R++ ++L++ +T Sbjct: 330 MMKDHIKEK-KENITIEDILSIVSKEFNLKTSDIKSTKRTQNIVLARRIIIFLARELTSL 388 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P++ F +DHT + H ++K+ +M+E + LK ++E LK I Sbjct: 389 SMPQLAVYFEMKDHTAISHNIKKINEMIEENHHLKSKIEELKNKI 433 >gi|269216526|ref|ZP_06160380.1| DNA replication initiator protein, ATPase [Slackia exigua ATCC 700122] gi|269130055|gb|EEZ61137.1| DNA replication initiator protein, ATPase [Slackia exigua ATCC 700122] Length = 516 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 140/509 (27%), Positives = 240/509 (47%), Gaps = 49/509 (9%) Query: 39 FTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 + V + +K V ++F R+ + + + TNF+K ++ RY + + Sbjct: 11 WINVLTLMKSYEDVSGMQMDAFFSRVHPQATSEGFLIATAETNFIKEQVEKRYSNAMKRA 70 Query: 97 FQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ----TISP 152 +E +EI V + S + S + SP T + Sbjct: 71 LKELTGMDYLIEIEVDESFIASAAQVRPQSSGDAIPSHTEQTPPSPASQPHPSTAGTDTQ 130 Query: 153 VFGSPLD-----------------------------SRFVFSTFIEGSSNRVALTAAQSI 183 + PLD S F ++ G SNR+A + A ++ Sbjct: 131 ISEPPLDRDRSISSNHMETSADPSRMKGSGSYSGIVSSLTFENYVIGDSNRLAYSMALAV 190 Query: 184 AEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFAS 243 AE LNPLFI+ + GLGKTHLL+AI N P + VY+ + F+ + + Sbjct: 191 AEQPG---VKPMLNPLFIYGNSGLGKTHLLRAIQNYINATYPTMDAVYVDSSEFLNDYTA 247 Query: 244 A-----IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 A + ++ N D+L+IDD+QF QGK LLN L+D KQVV + Sbjct: 248 AVASHDKDKKSYQDFQNRYWNADVLIIDDVQFFQGKSATVDIVFQLLNKLIDRGKQVVLS 307 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE--DPKLNINEE 355 ADR P + +D R++SR G + + + E + I+K+ +A ++ + +I ++ Sbjct: 308 ADRAPKTI-DVDERMQSRFNQGGTFDIQPPEVETKLGIIKSFIAEHRRASGEDTASIPKD 366 Query: 356 VLMHVARTVTTSGRELDGAFNQLVFRHSFA--PILTAEIADELLSHLVNTGETKKMRIED 413 V M++A +++ REL A +++ + + E A ELL+ ++G TKK + Sbjct: 367 VQMYIAENSSSNVRELKSAVTRVLSEIIYKGRKDFSVEDAQELLADHFSSGATKKADVAT 426 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 IQ +V ++Y +S DL+ +R R +V RQ+A+YLS+ M F IG++FG RDH+T++ Sbjct: 427 IQHVVEQYYKVSHADLVGVKRSRNIVYARQIAIYLSRNMLDVPFASIGKKFGQRDHSTIM 486 Query: 474 HAVRKVEKMLETDITLKKEVELLKRLISE 502 H+V+ VE + D ++ E+E++ ++I E Sbjct: 487 HSVKAVEDKMRKDKEIRDEIEIITKMIRE 515 >gi|313611875|gb|EFR86331.1| chromosomal replication initiator protein DnaA [Listeria monocytogenes FSL F2-208] Length = 327 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 117/353 (33%), Positives = 186/353 (52%), Gaps = 28/353 (7%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + E I+ +K + Y +W + HS+ N +S P NF++ W++ Y + Sbjct: 2 QSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIISAPNNFVRDWLEKSYTQF 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + QE R+ V + + E T P N + + I +GK Sbjct: 62 IANILQEITGRLFDVRF-IDGEQEENFEYTVIKP--------NPALDEDGIEIGKHM--- 109 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 L+ R+VF TF+ GS NR A A+ ++AE + Y NPLFI+ VGLGKTHL Sbjct: 110 -----LNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAY-----NPLFIYGGVGLGKTHL 159 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 + A+ + + + N +V+YL++E F F S+IRDN + RN+D+LLIDD+QFL Sbjct: 160 MHAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFLA 219 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L D KQ++ ++DRPP E+ +L+ R+RSR + G+ + D E Sbjct: 220 GKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPDLET 279 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 R +IL+ + + L+I EV++++A + ++ REL+GA ++V S Sbjct: 280 RIAILRK-----KAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSL 327 >gi|57506229|ref|ZP_00372148.1| chromosomal replication initiator protein DnaA [Campylobacter upsaliensis RM3195] gi|57015497|gb|EAL52292.1| chromosomal replication initiator protein DnaA [Campylobacter upsaliensis RM3195] Length = 439 Score = 365 bits (938), Expect = 8e-99, Method: Composition-based stats. Identities = 119/465 (25%), Positives = 233/465 (50%), Gaps = 39/465 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + + LK + + Y ++ LKF+ + + + P FL +I+ +Y E I ++ Sbjct: 4 SEILNILKKDLKEEEYKNYITHLKFNEKQSKADSLIFNAPNEFLAKFIQTKYAEKIAYIY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I T+ SK+ + I + + Sbjct: 64 EAQSGNKAKILIQ-----------------------SQTHKSKNSAKIDIAHIK-MQSTI 99 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A +++++ D G NP+FI+ GLGKTHLLQA+ Sbjct: 100 LNPSFTFDSFVVGGSNQYAYATCKAVSQKDKLG---KLYNPIFIYGPTGLGKTHLLQAVG 156 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NA ++ +V+Y T+E F+ F S I + ++ +N D+LLIDD+QFL I Sbjct: 157 NACLEM--GKKVIYATSENFINDFNSHIINKTMDKFQEKYQNCDVLLIDDVQFLGKTDKI 214 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q +F + N + D + Q++ +D PP+ L+ + R++SR G+ + E + +I+ Sbjct: 215 QEKFFFIFNEIRDQSGQIIMTSDNPPNMLKGITDRLKSRFANGIIADITPPQLETKIAII 274 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 + + E ++N++ E++ ++A + + RE++G L ++ E A E Sbjct: 275 RKKC-----EFNEVNLSNEIISYLATAMGDNIREIEGMITNLNAYSRLINQEISLEFAKE 329 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + IEDI +V+K +N+ +D+ S +R + +V R++ ++L++ +T Sbjct: 330 MMKDHIKEK-KENITIEDILSIVSKEFNLKTSDIKSTKRTQNIVLARRIIIFLARELTSL 388 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S P++ F +DHT + H ++K+ +M+E + LK ++E LK I Sbjct: 389 SMPQLAVYFEMKDHTAISHNIKKINEMIEENHHLKNKIEELKNKI 433 >gi|332968623|gb|EGK07677.1| DNA-directed DNA replication initiator protein DnaA [Kingella kingae ATCC 23330] Length = 599 Score = 365 bits (938), Expect = 8e-99, Method: Composition-based stats. Identities = 133/536 (24%), Positives = 231/536 (43%), Gaps = 78/536 (14%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 + + RL N++ + + + + + F ++++Y Sbjct: 74 MILADFWAQTLRRLHNELSEQQFNLAIAPITVGE-ENGVWIVYAQNQFKVNLLRSQYAAK 132 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASS--------------PSITKLSPINTNI 138 + + E + V + A + + + +P T Sbjct: 133 LDAIRAELAPNAPELLYKVGIGTRYEMANDAPASLPDVADSVHSADVADLPEFAPSETES 192 Query: 139 SKSPIILGKQTISPVFG------------------------------------------- 155 S I +T SP Sbjct: 193 SLHESIAASKTKSPEKNKKQSAQDILLERMNNLRPETEVQAALDKPKATPAIEQERQREE 252 Query: 156 -------SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + L + F T +EG N++A A+SIAE NP F++ + GLG Sbjct: 253 TEQRLVQTNLSPDYTFDTLVEGKGNQLAAQVAKSIAEKPG----DSMYNPFFVYGATGLG 308 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHL+QAI N I+ P RV Y+ ++ ++ F + +R+ K + +LL+IDD+ Sbjct: 309 KTHLVQAIGNQLIRLNPKARVRYMHSDEYIKTFMATVRNKTWDTFKQQYLHYNLLIIDDI 368 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK EF L + +Q++ D+ PS LE++D R+ SR G+++ L Sbjct: 369 QFIAGKDRTMEEFFFLFEHFHNRDQQIILTCDQLPSSLENMDKRLVSRFSWGMTIRLEPP 428 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP- 386 + EMR +IL+ + + +++ E + +A+ V S R+L+GA N+++ R F Sbjct: 429 ELEMRINILER-----KAQAMNISLEENAALFIAQNVKASVRDLEGALNRVIARCRFEKR 483 Query: 387 -ILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 ++ ++A + L +V + K + ++ I + VA +Y I +DLL +R R + RPRQ+A Sbjct: 484 NVIDIDLATDTLRDIVASNY-KPITVDLIMKTVADYYRIKISDLLGKKRTRNIARPRQMA 542 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 M L+K +T S P IG FG RDHTTV+HAVR + + ++ L ++ E L LI Sbjct: 543 MALAKELTTLSLPAIGDAFGGRDHTTVMHAVRTIATLRVEEMELGQDYEKLLILIQ 598 >gi|148244170|ref|YP_001218864.1| chromosomal replication initiator protein DnaA [Candidatus Vesicomyosocius okutanii HA] gi|146325997|dbj|BAF61140.1| chromosomal replication initiator protein DnaA [Candidatus Vesicomyosocius okutanii HA] Length = 430 Score = 365 bits (937), Expect = 9e-99, Method: Composition-based stats. Identities = 126/467 (26%), Positives = 234/467 (50%), Gaps = 49/467 (10%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + L++ + Y+ W Q LK N + L P + + +I I Sbjct: 5 WSQCLNTLRDSIPLSQYSVWIQPLKALE-NKNTLSLLAPNSQVLNYINKNLKPQIKNAVT 63 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + + + ++I + P+ ++ +PL Sbjct: 64 QHN---KNLKIFIGIACNPNTKQ--------------------------------HTTPL 88 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + F+ + G++N++A A + IAE T NP I+ GLGKTHL+QA + Sbjct: 89 FEDYTFNNLVLGNANQMAYGATKQIAEN----IKTSPYNPFIIYGKSGLGKTHLMQAAGH 144 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 + ++ PN++++Y+ F+ S++R N N+K+ ++ DLLL+DD+ + GK Q Sbjct: 145 LAKEKNPNIKIIYVPLMDFVRNITSSLRHNTIENIKNFYQSTDLLLVDDIHLIAGKEKSQ 204 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H+ N L KQ++ D+PP ++SL+ R+++R G+++ L + EMR +IL Sbjct: 205 EEFFHIFNFLFSGKKQIIFTCDQPPKNIKSLEDRLKTRFSQGLNLHLTPPELEMRAAILL 264 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIA 393 + + +N+ E+ + +A + ++ R+L+GA +L F+ I ++ EI Sbjct: 265 KKSQNKRI---NINLTEDTALFIASHIASNIRDLEGALLKLKAFVDFSKINHSFISKEII 321 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L L+ K + I DIQ+ VAKHY ++ +DL S R + V RQ+AM++ ++ Sbjct: 322 ESALGDLIKPQI-KNIDINDIQKEVAKHYALTISDLSSKSRKQHTVLARQMAMFICYELS 380 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S +IG+ FG+RDH+TVLHA++K+++ +I +K + EL+ + Sbjct: 381 SLSLTKIGKHFGNRDHSTVLHAIKKIKEKHIENIEIKNDYELINIKL 427 >gi|225848588|ref|YP_002728751.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644495|gb|ACN99545.1| chromosomal replication initiator protein DnaA [Sulfurihydrogenibium azorense Az-Fu1] Length = 442 Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats. Identities = 130/471 (27%), Positives = 230/471 (48%), Gaps = 38/471 (8%) Query: 32 EVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLE 91 E+ I+ V + LK +V + Y+ L + + N +++ P N K WI L Sbjct: 5 EIFKNKIWMNVLADLKEKVDENTYSL-LSGLDYVELKENSLYIYTPDNVYKTWI----LA 59 Query: 92 TITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTIS 151 + + ++ G ++ ++ ++L ++K ++ + Sbjct: 60 DLLEDITLSAKKVIGQDVNIQVISLKEIKKEEQK---------------------REDEN 98 Query: 152 PVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTH 211 L+ +F F + G+ N+VA + ++AE NPLFI+ VGLGKTH Sbjct: 99 FYGYLTLNPKFTFKNLVIGNHNKVAYQSCIAVAENPGK-----IFNPLFIYGDVGLGKTH 153 Query: 212 LLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 +L A A +KR N +++Y TA+ F S I+ L + +++DLLL+DD+QFL Sbjct: 154 MLHATAYHLLKRNQNAKIIYTTADTFASEMFSYIQKGMILEFRKRYKDVDLLLMDDIQFL 213 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 GK Q EF H+ N L + KQ++ ++D+PP+ L+ ++ R+ SR G+ V + D E Sbjct: 214 VGKERTQIEFYHIFNILYTAGKQIILSSDQPPNSLKGIEKRLISRFNSGLIVEITKPDLE 273 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILT 389 + +I+ + + + I EV + + + V +S REL+GA +L L Sbjct: 274 TKVNIINK-----KASEYGIEIPREVAIFLGKIVNSSVRELEGAVKRLKAYCDIMGKPLN 328 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 E+A +L +V E K + ++ I V ++ I + DLLS+++ + +V RQ+AMYLS Sbjct: 329 LEVAKTVLKDVVELQEIKSISVDSIIDEVCSYFKIDKKDLLSDKKNKNLVMARQIAMYLS 388 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 K +T + F ++H+T++ A KVE+ + D K V+ LK + Sbjct: 389 KTLTEEPLSSLSTYFKKKNHSTIISACNKVEETMNKDRKFKLIVDFLKDKL 439 >gi|262039497|ref|ZP_06012799.1| chromosomal replication initiator protein DnaA [Leptotrichia goodfellowii F0264] gi|261746478|gb|EEY34015.1| chromosomal replication initiator protein DnaA [Leptotrichia goodfellowii F0264] Length = 453 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 136/478 (28%), Positives = 248/478 (51%), Gaps = 35/478 (7%) Query: 31 LEVNCESIFTIVSSRLKNQVG-PDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 ++VN +++ + KN Y ++F+ +K +NI+ L+ + +K ++ +Y Sbjct: 1 MDVNASNLWDKILKIFKNNTSMETEYNAFFKNVKADDFSNNILSLNCNSPLMKEKME-KY 59 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 I + + + +I + E S I + N N S Sbjct: 60 KNEIEETLNDIF-ILSNEKIHIVFNIKKEEEPGEISYRIKEYRSTNQNSS---------- 108 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 + L+ R FI G ++R+A A ++ E ++ Y NPLFI+ GLGK Sbjct: 109 ----MKTGLNVRNRLDNFIVGDNSRMAYNACLAVLENEAPVY-----NPLFIYGGSGLGK 159 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THL+QA+ NA ++R P RV+Y T E F F +AI++ N +D+ RN+D+LL+DD+Q Sbjct: 160 THLMQAVGNAILERNPEKRVLYTTTEEFSNEFIAAIKEGRIKNFRDTFRNLDVLLLDDIQ 219 Query: 270 FLQ---GK---LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVP 323 F + G+ + EF H N L +S KQ++ +DR P ++++L R+ SR G+S Sbjct: 220 FFERIFGRGMGDTEEEFFHTFNKLQESGKQIIMISDRYPQDIKNLSKRLESRFISGLSTE 279 Query: 324 LGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS 383 + YE R +IL+N + I + I++ +L ++A +V+++ REL+G + R Sbjct: 280 ILEPGYETRKAILENIVEIK-----NIEIDDNILEYIAESVSSNVRELEGILTLINARAK 334 Query: 384 F-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 +T + + LS + + ++K + E I +V++ Y+I +++ + ++ + +V R Sbjct: 335 LLNEKITLQQVQDELSTRMRSQQSK-ITAEKIIEIVSQEYSIPVSEMKARKKKQEIVDAR 393 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 Q AM+L K + + IG FG +DH+TV+ ++RK+E +E +I KKE++ +K+ I Sbjct: 394 QTAMFLIKNILDLNLTTIGGLFGGKDHSTVISSIRKIEGKIEENIAFKKELDRIKQKI 451 >gi|157362871|ref|YP_001469638.1| chromosomal replication initiation protein [Thermotoga lettingae TMO] gi|167016906|sp|A8F346|DNAA_THELT RecName: Full=Chromosomal replication initiator protein DnaA gi|157313475|gb|ABV32574.1| chromosomal replication initiator protein DnaA [Thermotoga lettingae TMO] Length = 444 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 128/466 (27%), Positives = 226/466 (48%), Gaps = 36/466 (7%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 + + LK+++ V+ SWF + + V V F++ W++ +Y I+K +E Sbjct: 3 SEIIESLKSKLNRRVWESWFGTFDVKEIGPDYVVFQVGNLFIREWLEKKYGSLISKTLRE 62 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 + + + + + EK S+ + P+ +PL+ Sbjct: 63 LFGKPM--DFRIEHASAKTEEKLDSNEDEPLVK-----------------KRPLILTPLN 103 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 F F+ G +N A + +A+ NPLF+H VGLGKTHLLQAI + Sbjct: 104 PILTFENFVVGPNNMFAYSTCLEVAKNPGK------YNPLFLHGGVGLGKTHLLQAIGHY 157 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGKL-IQ 277 K +P++RV+YLT+E F+ +I+ N +D RN ID+LL+DD+QFL GK IQ Sbjct: 158 LFKHEPDMRVIYLTSERFLNELVDSIKKNRVQEFRDKFRNKIDVLLLDDVQFLIGKTGIQ 217 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E H N L + KQ+V +DR P +LE R+ SR Q GV + D E F I + Sbjct: 218 TELFHTFNELYNEGKQIVVCSDRDPQQLEKFQDRLVSRFQMGVVTKIEKPDEETCFKIAQ 277 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADEL 396 + E + E++L +++ + + R L GA +L+ + + + A EL Sbjct: 278 KMAQLENAE-----LQEDILKLISKNFSDNLRRLRGALVKLIMYQQISGEKVDLQKAFEL 332 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ + N+ K + E + + + + +S+ ++LS R + V RQ+ MY+++ S Sbjct: 333 LA-IQNSYHNKSLPEEKLMNSICEIFGVSQEEILSKSRKKEVALARQIGMYVARNYMGFS 391 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLET-DITLKKEVELLKRLIS 501 ++ F R H TV H ++K+E++ + ++ +K +++ L R ++ Sbjct: 392 LRKVADMF-KRSHPTVSHTIQKLEELTNSGNMVIKSQIDRLARCVT 436 >gi|308235533|ref|ZP_07666270.1| chromosomal replication initiation protein [Gardnerella vaginalis ATCC 14018] gi|311114014|ref|YP_003985235.1| DNA-directed DNA replication initiator protein [Gardnerella vaginalis ATCC 14019] gi|310945508|gb|ADP38212.1| DNA-directed DNA replication initiator protein [Gardnerella vaginalis ATCC 14019] Length = 535 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 113/380 (29%), Positives = 194/380 (51%), Gaps = 19/380 (5%) Query: 130 KLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSH 189 + + +N +++ + L++ F TF+ G SNR A T A ++AE Sbjct: 163 QNTNLNVQSINQKQTNIPASVNRDPTTHLNTYATFDTFVPGDSNRFARTVALAVAEGSGR 222 Query: 190 GYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-- 247 NPL I+ GLGKTHLL AI N ++ + +L+V Y+T+E F F A+++ Sbjct: 223 D-----FNPLCIYGGSGLGKTHLLNAIGNYALVKDSSLKVRYITSEEFTNEFIEALQNTS 277 Query: 248 ---NCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 N R +D+LLIDD+QFL GK +F H N+L + K++V A+D P Sbjct: 278 QNQGQIANFNRRYREVDVLLIDDIQFLGGKEATLEQFFHTFNALYQANKRIVIASDVAPK 337 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 L + R+ SR + G++V + D E R +IL+ +++ N+ +VL +A Sbjct: 338 NLRGFESRLISRFESGLTVDIKPPDLETRIAILRMMASMNGS-----NVPSDVLDLIAER 392 Query: 364 VTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 T + REL+GA ++ S ++ +A++ L + ++R DI VA+++ Sbjct: 393 FTENIRELEGALTRVTAVASLSNQPVSKALAEQALQDFFASDI--EVRPTDIIGQVAQYF 450 Query: 423 NISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM 482 +++ ++++ R + V RQ+AMYL++ MT S +IG FG RDHTTV+HA ++ Sbjct: 451 HMTFDEMVGRSRTKNVALARQIAMYLAREMTSMSLVDIGEVFGGRDHTTVMHAYTRISGE 510 Query: 483 LETDITLKKEVELLKRLISE 502 ++ + V L + + Sbjct: 511 MQEKQEIYNYVMELTVRLKQ 530 >gi|294010810|ref|YP_003544270.1| chromosomal replication initiator protein DnaA [Sphingobium japonicum UT26S] gi|292674140|dbj|BAI95658.1| chromosomal replication initiator protein DnaA [Sphingobium japonicum UT26S] Length = 469 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 148/470 (31%), Positives = 249/470 (52%), Gaps = 28/470 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSV--LHNIVHLSVPTNFLKAWIKNRYLET 92 E+ + + + L+ +G ++ W + + + L ++F ++ ++ + Sbjct: 22 LETAWATIRAGLRRDIGARMFDQWLKAAQLGDYCPESQTLDLLFASDFTANFVSGQFGDR 81 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + ++ + ++ + +L +P+ + + ++ + P Sbjct: 82 LRMAWRCAGAGVRELRLL-------------RAPNAVGPRVLELHQAEETVADDGAADLP 128 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 S R F F+ G +N +A +AAQ++A G R +PLFIH G GKTHL Sbjct: 129 P-ASNFQPRHGFDGFVTGETNHLAYSAAQAMA-----GEAQPRFSPLFIHGGTGQGKTHL 182 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AIA P+ V+Y++AE FM F +A+R N + K LR LLLIDD+QF+ Sbjct: 183 LHAIARLFSSHSPSAPVLYMSAERFMMEFVNAMRANETMMFKARLRAARLLLIDDIQFIA 242 Query: 273 GK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H +N L+DS ++V ADR P L+++D RI SRL GG+ + ++ Sbjct: 243 GKGSTQEEFLHTINDLIDSGARIVVTADRAPQMLDAIDARILSRLAGGLVADIRPAGLDL 302 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTA 390 R +IL+ + AI+ + + V+ +AR++ ++ REL+GAFN+L+ + Sbjct: 303 RLAILEAKRAIAG----DPPVPDAVVDFLARSIRSNVRELEGAFNKLIAYGQLTGRSIDL 358 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E A +L+ V +++ +++IQ+ A HY I ++ S RR R V RPRQVAMYL+K Sbjct: 359 EFAQAMLADAVRAN-ARRITVDEIQKACAAHYKIDAAEMRSKRRARAVARPRQVAMYLAK 417 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MTPRS PEIGR FG RDH+TV+HAVR +E++ +++ + ++ L+R + Sbjct: 418 KMTPRSLPEIGRIFGGRDHSTVIHAVRTIEELRQSNPDMDADIRALQRQL 467 >gi|118602061|ref|YP_903276.1| chromosomal replication initiator protein DnaA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567000|gb|ABL01805.1| chromosomal replication initiator protein DnaA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 430 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 230/467 (49%), Gaps = 49/467 (10%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 ++ + L++ + Y+ W Q LK +N + L P + + +I I Sbjct: 5 WSQCLNTLRDSIPLSQYSVWIQPLKALE-NNNTLSLLAPNSQVLNYINKHLKAQIKNAVA 63 Query: 99 EEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPL 158 + + + K I + + +PL Sbjct: 64 QHNKNL-----------------------------------KIFISIASNQNTQQHITPL 88 Query: 159 DSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIAN 218 + F I G++N++A A + IAE T NP I+ GLGKTHL+QA + Sbjct: 89 FEDYTFDNLILGNANQMAYGATKQIAEN----IKTSPYNPFIIYGGSGLGKTHLMQAAGH 144 Query: 219 ASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQ 277 S ++ N++V+Y+ F+ S++R N N+K ++ DLLL+DD+ + GK Q Sbjct: 145 LSKEKNQNIKVIYVPLMDFVRNITSSLRHNTIENIKTFYQSADLLLVDDIHLIAGKEKSQ 204 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 EF H+ N L + KQ++ D+ P ++SL+ R+++R G+++ L + EMR +IL Sbjct: 205 EEFFHIFNFLFNGKKQIIFTCDQSPKNIKSLENRLKTRFSQGLNLHLTPPELEMRAAILL 264 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIA 393 + + +N+ E+ + +A + ++ R+L+GA +L F+ I ++ EI Sbjct: 265 KKSQNKRI---NINLTEDTALFIATHIASNVRDLEGALLKLKAFVDFSKINHDFISKEIV 321 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 + L L+ K + I DIQ+ VAKHY ++ +DL S R + +V RQ+A+++ ++ Sbjct: 322 ETALGDLIKPQI-KNIDINDIQKEVAKHYALTISDLSSKSRKQHMVLARQMAIFICHELS 380 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S +IG+ FG+RDH+TVLHA++K+++ +I +K + EL+K + Sbjct: 381 SLSLSKIGKHFGNRDHSTVLHAIKKIKEKHLENIEIKNDYELIKLKL 427 >gi|323342257|ref|ZP_08082489.1| replication initiation protein DnaA [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463369|gb|EFY08563.1| replication initiation protein DnaA [Erysipelothrix rhusiopathiae ATCC 19414] Length = 471 Score = 363 bits (932), Expect = 4e-98, Method: Composition-based stats. Identities = 137/493 (27%), Positives = 244/493 (49%), Gaps = 37/493 (7%) Query: 15 VEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIV 72 +E+A+ N+ ++ E ++ V +K N +Y ++ + ++ + Sbjct: 10 IELAKGYLNMTT----MKFYLEDVWGKVKLAIKESNHFDEPIYNTYIEDTNLAALDESRA 65 Query: 73 HLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLS 132 + VPT +++ L + ++I S+A + + +I Sbjct: 66 VIVVPT-----YLQKVILSEEIPFLNDVINQILDK----TSMACEVLLENEFKKNIAVQV 116 Query: 133 PINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYT 192 P+ I P+++ I+P F F+ G SN+ + +AA A YT Sbjct: 117 PVQPQI---PVVIRNDGIAPNQ--------TFDNFVVGPSNKESHSAALGCAYRPGQFYT 165 Query: 193 TVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN 252 PLFI+ + GLGKTHLL AI N K P+ RV+Y ++ F+ + A++I++ + Sbjct: 166 -----PLFIYGNSGLGKTHLLNAIGNYIKKLNPDARVLYTSSSDFVRQVANSIQNRTIED 220 Query: 253 LKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPR 311 K+ + N+D+LLIDD+QFL GK F H+ N L+ + KQ+V +DR P+E++ L+ R Sbjct: 221 FKEQMYNLDVLLIDDIQFLAGKEKSHEIFFHIFNELIYNKKQIVITSDRLPTEIKGLEDR 280 Query: 312 IRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGREL 371 + SR G+SV + ++E +IL+ ++ + DP L +E+VL ++A + R L Sbjct: 281 LISRFSSGLSVGVDSPEFETSLAILELKIK-HKSVDPGL-FDEDVLSYIASNFSKDVRML 338 Query: 372 DGAFNQLVFRH---SFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND 428 +GA N+L+F S + IA +T ++ + I+R+VA +Y +++ Sbjct: 339 EGALNRLLFFSIEFSQNDHIDINIAMNAFKTNGEPIKTNELDTKTIKRIVADYYGLTQAQ 398 Query: 429 LLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDIT 488 L+S R + + R +A+YL + + +IG FG RDH+T++ A K+EK L+TD Sbjct: 399 LVSKARTKAIANARHIAIYLCRKHLDLPYNKIGEDFGKRDHSTIISACDKIEKKLKTDQM 458 Query: 489 LKKEVELLKRLIS 501 L + V L+ I Sbjct: 459 LARAVYELEAKIK 471 >gi|283953664|ref|ZP_06371195.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 414] gi|283794705|gb|EFC33443.1| chromosomal replication initiator protein DnaA [Campylobacter jejuni subsp. jejuni 414] Length = 432 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 114/463 (24%), Positives = 233/463 (50%), Gaps = 38/463 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 + + LK ++ + Y ++ LKF+ +++ + P + +I+ +Y + I + Sbjct: 4 SQILENLKKELSENEYENYLSNLKFNEKLSKADLLVFNAPNELMAKFIQTKYGKKIAHFY 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + + + I +S +K ++ + ++ I + Sbjct: 64 EVQSGNKAIINIQAQS------QKQSNKSTKIDITHIKAQ-----------------STI 100 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F +F+ G SN+ A A ++I D G NP+F++ GLGKTHLLQA+ Sbjct: 101 LNPSFTFESFVVGDSNKYAYGACKAIIHKDKLG---KLYNPIFVYGPTGLGKTHLLQAVG 157 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 NAS++ +V+Y T+E F+ F S +++ + RN D+LLIDD+QFL I Sbjct: 158 NASLEM--GKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKI 215 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF + N + ++ Q++ +D PP+ L+ + R++SR G+ + + + +I+ Sbjct: 216 QEEFFFIFNEIKNNDGQIIMTSDNPPNILKGITERLKSRFAHGIIADITPPQLDTKIAII 275 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADE 395 + + E +N++ +++ ++A ++ + RE++G L + +T E+A Sbjct: 276 RKKC-----ELNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKS 330 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 ++ + + + I+DI +V K +NI +D+ SN++ + +V R++ +YL++ +T Sbjct: 331 VMKDHIKEK-KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARTLTAL 389 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 + P++ F +DHT + H V+K+ +M+E D +LK + K+ Sbjct: 390 TMPQLANYFEMKDHTAISHNVKKITEMIENDTSLKAKNRRTKK 432 >gi|225164453|ref|ZP_03726710.1| chromosomal replication initiator protein DnaA [Opitutaceae bacterium TAV2] gi|224800923|gb|EEG19262.1| chromosomal replication initiator protein DnaA [Opitutaceae bacterium TAV2] Length = 354 Score = 363 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 118/358 (32%), Positives = 191/358 (53%), Gaps = 12/358 (3%) Query: 146 GKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASV 205 + L+ R F TF+ G++N++ A NPLFI+ Sbjct: 6 ARHNERSAATGALNPRNTFKTFVIGANNQM-----AHAAATAVAQAPAQAYNPLFIYGET 60 Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLI 265 GLGKTHL+ AI + + +P RV YL+ E F F A+++N + + R++D+LL+ Sbjct: 61 GLGKTHLMHAIGHTILLNRPEARVAYLSTEKFTNEFIQALQENSLVKFRQRYRSVDVLLL 120 Query: 266 DDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL 324 DD+QFL GK IQ EF H N L +S KQ+V ++DR SE++ L+ R+ SR + G+ + Sbjct: 121 DDVQFLAGKERIQEEFFHTFNELFESQKQIVLSSDRRASEIQKLEARLVSRFEWGLPADI 180 Query: 325 GLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF 384 DYE R +IL+ + A + ++ +V + +A+ + + R L+GA ++ S Sbjct: 181 QAPDYETRLAILRTKAATLK-----FDLPHDVGVFIAQNIAKNIRRLEGALLKVASYGSL 235 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 + + LL ++ + IE IQ+ V +H+ + D+ S RR + PRQ Sbjct: 236 TGRAVDIATVENLLKDVLIEQAQNALTIELIQKKVTEHFQLRPGDMTSKRRPNNIAIPRQ 295 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +AM+L + +T S +IG FG RDH TV+HA + VE MLE D+ ++ ++E LK +S Sbjct: 296 IAMWLCRQLTRHSLQDIGDAFGGRDHGTVIHAGKAVENMLEQDVQMRSQIEFLKTQLS 353 >gi|294790224|ref|ZP_06755382.1| DNA-directed DNA replication initiator protein [Scardovia inopinata F0304] gi|294458121|gb|EFG26474.1| DNA-directed DNA replication initiator protein [Scardovia inopinata F0304] Length = 572 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 128/395 (32%), Positives = 204/395 (51%), Gaps = 18/395 (4%) Query: 115 ALPSVEKTASSPSITKLSPINT-NISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSN 173 A+P+ + SP + N +IS + K + + L+ F TF++G+SN Sbjct: 184 AIPTQASLSLSPVSDHIRKSNQGSISAGSAEVSKNLEARNAVTHLNPFATFDTFVQGTSN 243 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A +AA +AE T NPLFI+ GLGKTHLL AI N +++ P + V Y+T Sbjct: 244 RFAKSAAVIVAEAPG----TADYNPLFIYGGSGLGKTHLLNAIGNYVLQQDPTMTVRYVT 299 Query: 234 AEYFMWRFASA-----IRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLL 288 AE F+ F SA + N RN+D+LL+DD+QF +G +F H N L Sbjct: 300 AEEFVNDFVSALAAGARKQAALANFTKKYRNVDVLLLDDIQFFRGSETMEQFFHTFNELT 359 Query: 289 DSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDP 348 + KQ+V A+D P+ L+ + R+R+R G+ V + + E R +IL+ + + Sbjct: 360 STGKQIVIASDVAPNNLKGFNERLRTRFNKGLVVDVAPPEKETRVAILR-----LKVSNS 414 Query: 349 KLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETK 407 L + ++VL ++A +T S REL+GA ++ + +T +A++ L N+ Sbjct: 415 NLAVPDDVLDYIADKITDSVRELEGALTRVTAIATLNDQQVTRTLAEQTLHDFFNSDV-- 472 Query: 408 KMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDR 467 ++ I VA+HY ++ +D++ R + V RQV+MYL + MT S +IG FG R Sbjct: 473 EVTPTSIITNVAQHYTLTFDDIVGPSRTKNVAEARQVSMYLIREMTSLSLVDIGEIFGGR 532 Query: 468 DHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 DH+TV+HA +KV + TL V + I + Sbjct: 533 DHSTVMHACKKVAVEMGKKRTLYNNVNDITMHIKQ 567 >gi|32266609|ref|NP_860641.1| chromosomal replication initiation protein [Helicobacter hepaticus ATCC 51449] gi|61212728|sp|Q7VH57|DNAA_HELHP RecName: Full=Chromosomal replication initiator protein DnaA gi|32262660|gb|AAP77707.1| chromosomal replication initiator protein DnaA [Helicobacter hepaticus ATCC 51449] Length = 456 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 117/467 (25%), Positives = 229/467 (49%), Gaps = 36/467 (7%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + +LK+++ Y + +++ ++ VP F+ WIK+ +LE+I F Sbjct: 17 DNILKKLKSKLSEFEYQFYISLMEYDENASRTDMKVFYVPNIFVANWIKSNHLESIIDAF 76 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +EE + EI ++ K+ + N G Sbjct: 77 EEESNNGVRPEIHIKVKEKKENVKSLKNNKSMLYFNTN-------------------GLS 117 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F F+ G SN A T A+ + + + Y NP+ ++ GLGKTHLL AI Sbjct: 118 LNPFYTFENFVVGKSNEYAYTIAKLVLQQQASAY-----NPVLLYGKSGLGKTHLLNAIG 172 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N ++ N V+Y+T+E F+ + I+ + +D R D LLIDD+QF GK I Sbjct: 173 NDVKEKNKN--VLYVTSEDFLNDYMDKIKRKTMDSFRDKYRKCDYLLIDDVQFFGGKEGI 230 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q E H N+L +S KQ+V +D+PP E++ L+ R+R+R + G + + E + +I+ Sbjct: 231 QEELLHTFNTLHNSQKQIVMTSDKPPKEIKGLEERLRTRFEWGAMAEITNPELETKIAII 290 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILT-AEIADE 395 K++ +++ + + EV+ ++A + + R+++G + + + +P + +IA Sbjct: 291 KSKCEVNR-----IVLENEVIDYIASNIYGNIRQIEGILSTINAHINLSPESSSLKIAKN 345 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L + + + + +++I ++V+K NI ++++S R R V R+ +YL+ + Sbjct: 346 VLKNY-QIEKLEGITLDNIIKVVSKELNIKPSEIVSKERNRKVTFARRAVIYLAHSLMIN 404 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S I + G +DH++V A++ ++K + + T + +E +K I + Sbjct: 405 SMNIIAKELGMKDHSSVSKALKAIKKEIAENSTTRNIIEDMKSKIQQ 451 >gi|300087140|ref|YP_003757662.1| chromosomal replication initiator protein DnaA [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526873|gb|ADJ25341.1| chromosomal replication initiator protein DnaA [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 463 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 136/468 (29%), Positives = 220/468 (47%), Gaps = 37/468 (7%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ L+ + + +W+ S + VP F+ +++ I K Sbjct: 29 IWETALGELECSLNRSNFRTWYTGTTGLSYAGGRFVIGVPNTFVAEYLERNQRSLIEKTL 88 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 + GV + + S+ + P+ T P+ + Sbjct: 89 IKVMG---GVSLELDF----SITGSGLKPAKTDRQPVK---------------NRDGHRC 126 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 + ++ F++FI G+SNR+A AA S A Y NPLFIH S GLGKTHLLQAI Sbjct: 127 FNPKYNFNSFIVGNSNRMAHAAALSAAHQSGQAY-----NPLFIHGSSGLGKTHLLQAIG 181 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 + RV Y++ E F F +A+++ A ++ RN+D+LLIDD+QF+ GK Sbjct: 182 QTA--GDEGRRVRYVSGEQFTSEFVAALKERRADEFRELYRNVDVLLIDDIQFIAGKAQT 239 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 + F H N L ++ KQ+V +AD PP E+ L+ R+RSR + G++ + D + R SIL Sbjct: 240 EESFFHTFNELHNNGKQIVLSADSPPREISQLEDRLRSRFEWGLTTEIFPPDEKTRLSIL 299 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 K + E+ I +VL ++A V + REL+G N+++ +T E+A + Sbjct: 300 KT-----RAEETGAEITPDVLDYLASEVIRNIRELEGNLNRVLAYSRLLRSAITPEVARQ 354 Query: 396 LLSHLVNTGET-KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L ++ E + VA+ + + DLL RR + RQ+AMY+ K Sbjct: 355 ALKNIAGDPAPGVNDSPEKLLGTVAECFEMCPEDLLGRRRDKETAGARQMAMYVLKSRNI 414 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S EIGR G R TV HA K+ + L+ + LK+++ ++R + E Sbjct: 415 WSMNEIGRVIGGRSAATVSHACDKITRELDYNPLLKRKLIEIERRLQE 462 >gi|254384774|ref|ZP_05000111.1| chromosomal replication initiator protein dnaA [Streptomyces sp. Mg1] gi|194343656|gb|EDX24622.1| chromosomal replication initiator protein dnaA [Streptomyces sp. Mg1] Length = 590 Score = 361 bits (926), Expect = 2e-97, Method: Composition-based stats. Identities = 106/319 (33%), Positives = 173/319 (54%), Gaps = 14/319 (4%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L+ +++F TF+ G+SNR A V NPLFI+ GLGKTHLL Sbjct: 281 TARLNPKYLFDTFVIGASNRF-----AHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLH 335 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + P RV Y+++E F F ++IRD + R +D+LL+DD+QFL K Sbjct: 336 AIGHYARSLYPGTRVRYVSSEEFTNEFINSIRDGKGDAFRKRYREMDILLVDDIQFLASK 395 Query: 275 L-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q EF H N+L ++ KQ+V ++DRPP +L +L+ R+R+R + G+ + + E R Sbjct: 396 ESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 455 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +IL+ + +LN EVL +A ++ + REL+GA ++ S + + Sbjct: 456 AILRK-----KAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDLGL 510 Query: 393 ADELLSHLVN--TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 +++L +L+ ++ DI A ++ ++ +DL + R R +V RQ+AMYL + Sbjct: 511 TEDVLKNLIPGGEDSAPEITASDIMAATADYFGLTVDDLCGSSRSRVLVTARQIAMYLCR 570 Query: 451 IMTPRSFPEIGRRFGDRDH 469 +T S P+IG +FG RDH Sbjct: 571 ELTDLSLPKIGAQFGGRDH 589 Score = 50.0 bits (118), Expect = 9e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 5/96 (5%) Query: 34 NCESIFTIVSSRL----KNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 + +++ V +L + + P W +R + +++ + L+VP + K ++ R Sbjct: 35 DLAAVWPRVLEKLLGEGQQGIEPKD-KQWVERCQPLALVADTALLAVPNEWGKRVLEGRL 93 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASS 125 I+ E R + I V A SS Sbjct: 94 APLISDALSRECGRPIRIAITVDDSAGEPAPPAPSS 129 >gi|158520018|ref|YP_001527888.1| chromosomal replication initiator protein DnaA [Desulfococcus oleovorans Hxd3] gi|158508844|gb|ABW65811.1| chromosomal replication initiator protein DnaA [Desulfococcus oleovorans Hxd3] Length = 460 Score = 360 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 120/468 (25%), Positives = 222/468 (47%), Gaps = 17/468 (3%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 +S++ V + LK V + Y W + L+F S + + L+ P +F K W+ Y + I + Sbjct: 2 DSVWKKVKADLKTHVPLNNYMMWIEPLEFESAQPDTLVLNCPNSFSKKWVAGNYEKLIAE 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + + V +K + +P T + S + + L + P G Sbjct: 62 KVCGLCGKQVHLRLEVAPPGT-GAKKQSPAPDSTAIPSGTHTRSDAQLTLPSVQVKPATG 120 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 L + + F F+ G+ N A TA S+ G + LF+ + G+GK+HL QA Sbjct: 121 RVLKADYTFDNFVVGNHNDFAYTAVLSLGARQQSGGRS-----LFLSSRPGMGKSHLAQA 175 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGK 274 + + +IK QP RV Y T E F A + K R D+LLIDD+ L GK Sbjct: 176 LGHQTIKAQPGCRVYYTTVEDFSNEMVYAYTTKSSGAFKKKYRTGFDMLLIDDIHALAGK 235 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 Q E +++ +L++ ++V+ A P E+ ++ +++SRL G+ + D+ R Sbjct: 236 DRTQEELAMVVDYMLEADRKVLFAGCCLPGEIPKMNDQLKSRLSCGLITTMETPDFTTRV 295 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPILTAEI 392 IL+ + + ++L ++A +T R+L+ L + + E+ Sbjct: 296 RILEK-----KARFYGYAVPRDILEYLADVLTEDVRQLESGLANLATKSCLLGVPMDREL 350 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A+ ++ ++ + ++ I+++V K Y ++ ++ S R V PRQVA+YLS+ Sbjct: 351 AESIIKNM--AVRNGAITLDAIKKVVCKAYGLAAKEIDSRSRKHRVAWPRQVAIYLSRRY 408 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 T S IGR + +R H TVLH++ VE+ ++ + ++ +EV+ + + I Sbjct: 409 TDHSLKAIGRSY-NRYHATVLHSINTVEQAMKANRSVFQEVDYIIQKI 455 >gi|309805918|ref|ZP_07699950.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 03V1-b] gi|308167694|gb|EFO69841.1| chromosomal replication initiator protein DnaA [Lactobacillus iners LactinV 03V1-b] Length = 333 Score = 359 bits (922), Expect = 6e-97, Method: Composition-based stats. Identities = 123/332 (37%), Positives = 191/332 (57%), Gaps = 15/332 (4%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 L+S++ F TF++G N++A AA ++A+ Y NPLFI VGLGKTHL+QAI Sbjct: 2 QLNSKYTFDTFVQGEGNKLAAGAALAVADNPGSFY-----NPLFIFGGVGLGKTHLMQAI 56 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL- 275 + + + N ++VY+ +E F+ F ++I++ ++ R DLLL+DD+QF K Sbjct: 57 GHQMLTEKANAKIVYIQSETFVNDFINSIKNKTQDLFREKYRTCDLLLVDDIQFFAKKEG 116 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 IQ EF H +L + KQ+V +DR P+E+ L R+ SR G+ V + D E R +I Sbjct: 117 IQEEFFHTFETLYNDQKQIVMTSDRLPNEIPDLSERLVSRFAWGLQVEITPPDLETRIAI 176 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIAD 394 L+ + E L I++ L +VA V T+ REL+GA ++ + + +A Sbjct: 177 LRK-----KAEADGLGIDDNTLDYVASQVDTNIRELEGALVKVQAHATIEREDINLNLAK 231 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E L+ L +T+ + I IQ +VA ++ S +L +RV+ +V PRQ+AMYLS+ +T Sbjct: 232 EALADLKLVQKTRGLEISKIQEVVANYFQTSTTELKGKKRVKQIVVPRQIAMYLSRKLTD 291 Query: 455 RSFPEIGRRFGDRDHTTVLHAV---RKVEKML 483 S P+IG+ FG +DHTTV+HA RK+ K L Sbjct: 292 SSLPKIGQEFGGKDHTTVMHAYEKNRKISKKL 323 >gi|319936678|ref|ZP_08011091.1| chromosomal replication initiator protein dnaA [Coprobacillus sp. 29_1] gi|319808235|gb|EFW04800.1| chromosomal replication initiator protein dnaA [Coprobacillus sp. 29_1] Length = 444 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 129/476 (27%), Positives = 239/476 (50%), Gaps = 44/476 (9%) Query: 34 NCESIFTIVSSRLKNQVGPDV-YASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 N ++ + + KNQ+ + + S+F L+ ++ + V ++V T + + + YLE Sbjct: 3 NLDTDWQKTLNIFKNQIDDKIIFDSFFTTLQVKDIIDSDVTITVDTQWSLDGV-SPYLEK 61 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + +++ S + + S++ ++ Sbjct: 62 LEEIYNTLTSGHYQLHLETEDEYNKSIQ--------------------------QKNDLM 95 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 +F L+S F F+ G+SNR+A A+ ++A Y+ PLFIH++ GLGKTHL Sbjct: 96 LFNDNLNSDLKFENFVVGNSNRIAQNASLAVAMKPGISYS-----PLFIHSNSGLGKTHL 150 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI N + + P +V++ T+E F+ + ++ ++ R+ID+LLIDD+QF+ Sbjct: 151 LNAIGNYAKSKDPFTKVLFTTSENFVNEYIQSLSNHTIDEFNYKYRHIDILLIDDIQFMA 210 Query: 273 GKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 K E F ++ NSL+ + KQ+V +D+PP +L ++ R+ SR G++V + ++E Sbjct: 211 TKESSSEIFFNIFNSLISNKKQIVITSDKPPRDLRGMESRLVSRFASGLTVSIDTPEFET 270 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI---- 387 +IL+ ++ I + P I EEVL +A T REL+G+ +L+F Sbjct: 271 SKAILRKKIEIENVDYP---ITEEVLDFIASHFNTDVRELEGSLKRLLFYKLICEEKRDC 327 Query: 388 LTAEIADELLSHLVNTG--ETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + A E S + K++ + +I++ VA +YN++ + + S R ++ R ++ Sbjct: 328 IDLNFALEAFSDTYKNQPIQKKELTVSNIKKCVADYYNLTVSQINSKSRTSNIIVARHIS 387 Query: 446 MYLSKIMT-PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 MYL + + SF +IG FG RDH+TV+ A KV+K LE D+ ++ ++ +K + Sbjct: 388 MYLVRELIKDISFIQIGHEFGGRDHSTVMKACDKVQKKLEKDLNYRQAIDDIKNKL 443 >gi|238018223|ref|ZP_04598649.1| hypothetical protein VEIDISOL_00047 [Veillonella dispar ATCC 17748] gi|237864694|gb|EEP65984.1| hypothetical protein VEIDISOL_00047 [Veillonella dispar ATCC 17748] Length = 525 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 144/526 (27%), Positives = 246/526 (46%), Gaps = 66/526 (12%) Query: 34 NCESIFTIVSSRLKNQ---VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +I+ + K + +Y L S+ + +H+ V F+K I + Sbjct: 5 DLNNIWEHILQEAKKNMQHLPDALYLRVTSSLIPMSLESHSIHIGVMQTFVKNLIDQQ-- 62 Query: 91 ETITKLFQEEHSRIQG---------------------------VEILVRSVALPSVEKTA 123 I+K Q+ + + G ++ + LP V + Sbjct: 63 PQISKALQDAITTVIGSHRDMVLFDFNQESVDTTFVDESLIDDAPVVAPPMPLPPVVEEK 122 Query: 124 S-----------SPSITKLSPINTNISKSPIILGKQTISPVFG-------------SPLD 159 + P +P I P++ +T+ S L+ Sbjct: 123 THQEEFYKPIYQEPVYIDRAPAPVEIPDEPMVAPSKTVETTTPTLQSDNVPVDLSLSNLN 182 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ AI NA Sbjct: 183 PAYRFDNYVTGNANRIPFGAAQNVAEYPGGDY-----NPLFIYGPSGLGKTHLMHAIGNA 237 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + + Sbjct: 238 IKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESRESTKT 297 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 E + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R +I ++ Sbjct: 298 ELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIAIFRS 357 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADE 395 L K++ + I+ + + +VA + + R L GAF +L+ S + E + Sbjct: 358 LLEREYKKNRVIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLEYTKQ 417 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQVAMYL + M Sbjct: 418 ALAGLVHTEEVNMVTIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQVAMYLCRDMINE 477 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+P+I F RDHTT+LHA K+ K +E + K + +K+ ++ Sbjct: 478 SYPQIAAAFS-RDHTTILHAYDKITKEIERNEETKNMISEIKQKLT 522 >gi|266620978|ref|ZP_06113913.1| ribosomal subunit interface protein [Clostridium hathewayi DSM 13479] gi|288867359|gb|EFC99657.1| ribosomal subunit interface protein [Clostridium hathewayi DSM 13479] Length = 308 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 112/311 (36%), Positives = 189/311 (60%), Gaps = 11/311 (3%) Query: 197 NPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDN---CALNL 253 NPLFI+ VGLGKTHL+ +I + +K PN +V+Y+T+E F AIR+ Sbjct: 1 NPLFIYGGVGLGKTHLMHSIGHFILKNNPNAKVLYVTSEKFTNELIDAIRNKNNFSPTEF 60 Query: 254 KDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRI 312 +D R D+LLIDD+QF+ GK Q EF H N+L +S KQ++ ++D+PP E+E+L+ R+ Sbjct: 61 RDKYRTNDVLLIDDIQFIIGKESTQEEFFHTFNALYESKKQIIISSDKPPKEIETLEERL 120 Query: 313 RSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELD 372 RSR + G++V + DYE R +IL+ ++E NI+ EV+ ++A + ++ REL+ Sbjct: 121 RSRFEWGLTVDIQSPDYETRMAILRK-----KEEMEGYNIDNEVIKYIATNIKSNIRELE 175 Query: 373 GAFNQLVFRHSF-APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLS 431 GA ++V +T E+A+E L +++ + +++ E + ++VA HY I+ D+ S Sbjct: 176 GALTKIVALSRLDNKEITVELAEEALKDIISPNDKREVTPELVIQVVADHYGITPLDICS 235 Query: 432 NRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKM-LETDITLK 490 +R + +V PRQ+ MYL + + IG+ G RDHTT++H + K++ ++ D L Sbjct: 236 QKRNKEIVYPRQIVMYLCREIVGTPLQSIGKYLGGRDHTTIIHGIEKIKADVVKNDSNLI 295 Query: 491 KEVELLKRLIS 501 +++LK+ +S Sbjct: 296 NTLDILKKKLS 306 >gi|313893529|ref|ZP_07827099.1| chromosomal replication initiator protein DnaA [Veillonella sp. oral taxon 158 str. F0412] gi|313441972|gb|EFR60394.1| chromosomal replication initiator protein DnaA [Veillonella sp. oral taxon 158 str. F0412] Length = 525 Score = 359 bits (921), Expect = 8e-97, Method: Composition-based stats. Identities = 145/526 (27%), Positives = 248/526 (47%), Gaps = 66/526 (12%) Query: 34 NCESIFTIVSSRLKNQ---VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +I+ + K + +Y L S+ + +H+ V F+K I + Sbjct: 5 DLNNIWEHILQEAKKNMQHLPDALYLRVTSSLIPMSLDSHSIHIGVMQTFVKNLIDQQ-- 62 Query: 91 ETITKLFQEEHSRIQG---------------------------VEILVRSVALPSVEKTA 123 I+K Q+ + + G ++ + LP V + Sbjct: 63 PQISKALQDAITTVIGSHRDMVLFDFNQESIDTTFVDESLIDDAPVVAPPMPLPPVVEEK 122 Query: 124 S-----------SPSITKLSPINTNISKSPIILGKQTISPVFG-------------SPLD 159 + P +P NI P++ +T+ S L+ Sbjct: 123 AQQDEFYTPVYQEPVYIDRTPAPVNIPDEPMVAPSKTVETTTPTLQSDNVPVDLSLSNLN 182 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ AI NA Sbjct: 183 PAYRFDNYVTGNANRIPFGAAQNVAEFPGGDY-----NPLFIYGPSGLGKTHLMHAIGNA 237 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQH 278 + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + + Sbjct: 238 IKEHHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESRESTKT 297 Query: 279 EFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKN 338 E + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R +I ++ Sbjct: 298 ELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIAIFRS 357 Query: 339 RLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADE 395 L K++ + I+ + + +VA + + R L GAF +L+ S + E + Sbjct: 358 LLEREYKKNRVIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLEYTKQ 417 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQ+AMYL + M Sbjct: 418 ALAGLVHTEEVNMVNIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRDMINE 477 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+P+I F RDHTT+LHA K+ K +E + K+ V +K+ ++ Sbjct: 478 SYPQIAAAFS-RDHTTILHAYDKITKEIEKNEETKRIVGEIKQKLT 522 >gi|222823047|ref|YP_002574620.1| chromosomal replication initiator protein DnaA [Campylobacter lari RM2100] gi|222538268|gb|ACM63369.1| chromosomal replication initiator protein DnaA [Campylobacter lari RM2100] Length = 442 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 115/462 (24%), Positives = 219/462 (47%), Gaps = 38/462 (8%) Query: 43 SSRLKNQVGPDVYASWFQRLKFHS--VLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEE 100 K ++ + Y ++ L+F +NI+ P +FL +I+ +Y + + ++ + Sbjct: 7 LLEFKTEISNNEYNTYISHLQFSEKLSKNNILVFIAPNHFLAKFIQTKYAQKLAYFYEVK 66 Query: 101 HSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDS 160 V+I+ + + + I S I L+ Sbjct: 67 TGINPQVKIITNNQKIEKKHFSTDISQIKFQSTI-----------------------LNP 103 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 F F +F+ G SN+ A ++I + G NP+FI+ GLGKTHLLQA+ N Sbjct: 104 SFTFESFVVGDSNQFAYATCKAITDKSKLG---KLYNPIFIYGPTGLGKTHLLQAVGNVC 160 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHE 279 + +V+Y T++ F+ F + + + +N D+LLIDD+QFL IQ E Sbjct: 161 LDN--GYKVIYATSDNFINDFTMHLNNKTMSKFHEKYKNCDVLLIDDVQFLGKTDKIQEE 218 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 F N + + Q++ +D PP+ L+ + R++SR G+ + + + +I+K + Sbjct: 219 FFFTFNEIKEKFGQIIMTSDNPPNMLKGITERLKSRFANGIIADITPPQLDTKIAIIKKK 278 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLS 398 E + + EV+ ++A ++ + RE++G L + F +T EI + Sbjct: 279 C-----EFNAIYLKPEVISYIATSMGDNIREIEGMITNLNAQARLFNQEITLEIVKSFMK 333 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 + + + +EDI V+K YN+ ND+ SN++ + +V R+V ++L++ +T S P Sbjct: 334 DHIKE-TKENISVEDILADVSKSYNLKPNDIKSNKKTQNIVMARRVVIFLARELTTMSMP 392 Query: 459 EIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ R F +DHT + H ++K+++++ + LK VE L+ I Sbjct: 393 QLARFFNMKDHTAISHNIKKIQELMSENENLKAIVEELRNKI 434 >gi|298245521|ref|ZP_06969327.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] gi|297553002|gb|EFH86867.1| chromosomal replication initiator protein DnaA [Ktedonobacter racemifer DSM 44963] Length = 536 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 122/380 (32%), Positives = 194/380 (51%), Gaps = 18/380 (4%) Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALT 178 S P N PI + I+ G L+SR+ F FI G SN++A Sbjct: 158 PPPPGSGSEGESERPAGYNNPARPIAVPP-VITFGTGGQLNSRYTFDAFIVGKSNQLAHA 216 Query: 179 AAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFM 238 A+ + +E Y NPLF++ VGLGKTHLL A+ + L V+Y+T+E F Sbjct: 217 ASLAASENPGRIY-----NPLFLYGGVGLGKTHLLHAVGHEG--EVKGLTVLYVTSEKFT 269 Query: 239 WRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAA 297 +AIR + R ID+LL+DD+QF+ GK + EF H NSL ++ KQ+V Sbjct: 270 NEIINAIRYQKTEEFRAKYRQIDILLVDDIQFIAGKESTEEEFFHTFNSLHNANKQIVVT 329 Query: 298 ADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVL 357 +DRPP + SL R+RSR + G+ + +YE R +IL+ S+ + ++ V+ Sbjct: 330 SDRPPKAIHSLQDRLRSRFEWGLLADVQPPEYEHRLAILR-----SKTDLLHFSVPSAVV 384 Query: 358 MHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHL---VNTGETKKMRIED 413 +VAR +S REL+GA N+++ + +T ++A + L ++ K+ + + Sbjct: 385 EYVARPECSSVRELEGALNRVIAYATLHNAPITVQLATDALENIYSDKKPSAATKLSVSE 444 Query: 414 IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVL 473 + V ++YN+ + +R R + PRQVAMYL + T S +IG G RDHTT++ Sbjct: 445 VIDGVCRYYNVEAERIRGKQRDRDIAWPRQVAMYLMREETTASLQQIGAELGGRDHTTIM 504 Query: 474 HAVRKVEKMLETDITLKKEV 493 H KV+ + ++ E+ Sbjct: 505 HGWEKVQGEMRQSDRVRHEI 524 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 33 VNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 +N I+ RL+ +V P+ + +WFQ S I +SV + F+K ++ R+ Sbjct: 1 MNARQIWQTAIERLQERVQPNTFTTWFQGTSADSFQDGIFVVSVSSTFVKTHLERRFTSL 60 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 I + + I G+E+ V+ V S P K P LG+ SP Sbjct: 61 IRTILTD----ITGMEVEVQFVVSRDKTTPEQSGEPLFSPP------KRPSRLGRTRTSP 110 Query: 153 V 153 Sbjct: 111 A 111 >gi|323697422|ref|ZP_08109334.1| chromosomal replication initiator protein DnaA [Desulfovibrio sp. ND132] gi|323457354|gb|EGB13219.1| chromosomal replication initiator protein DnaA [Desulfovibrio desulfuricans ND132] Length = 453 Score = 357 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 122/472 (25%), Positives = 214/472 (45%), Gaps = 26/472 (5%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 ++ + + L+ + P ++ W + L+ V N + L+ P F+ W+++R L+ I Sbjct: 2 LDTAWKQILFSLEKSLNPGLFTVWIKPLQGR-VDGNRLTLTAPNEFVANWVRDRLLQVIR 60 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 + E + I + + + +P ++ + QT+ PV Sbjct: 61 ESAAEVLGAEPRITINIGAREPAAKAAAPVGKKQAVAAPAPRHMG----LPLGQTLKPVT 116 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S + RF F F+ G SN +A A++SI G + + LF+ + GLGKTHLLQ Sbjct: 117 VS--NWRFSFDDFVVGPSNELACAASKSI------GSSAFNSDHLFLSSGPGLGKTHLLQ 168 Query: 215 AIANASIK--RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFL 271 ++ N + + +L+V L++E F R+ A + K R ID+LL++D+ F Sbjct: 169 SVGNELCRTANRKHLKVACLSSEEFATRWVLAFKSGQVDQFKAQFRQGIDVLLLEDVHFF 228 Query: 272 QGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 QGK +Q E L +L + +VV + P E +D R+ SR G + D E Sbjct: 229 QGKEKMQEELLCTLTALRERGCKVVLTSSFMPKEFSKVDDRLVSRFCSGFLAHINRPDME 288 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILT 389 R I+ + + ++ + EV +A +TT R+L+ N L+ + +T Sbjct: 289 TRRRII-----LDKARRMQVAVPGEVSELLAERITTDIRQLESCLNNLILKARLLNRDVT 343 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A E+L + + I + + K Y +S +L S R R VV R A YL+ Sbjct: 344 MNLAWEVLENYAVQNASPD--FAHIIQFICKCYELSEEELRSKSRKRDVVLARNTAFYLA 401 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + T S IG R G + H+TVL + KVE+ + L +++E + ++ Sbjct: 402 RKHTELSLKSIGERLGRK-HSTVLKGITKVEREISLQTPLGRQIENTTQRLT 452 >gi|282848766|ref|ZP_06258161.1| chromosomal replication initiator protein DnaA [Veillonella parvula ATCC 17745] gi|282581552|gb|EFB86940.1| chromosomal replication initiator protein DnaA [Veillonella parvula ATCC 17745] Length = 524 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 144/525 (27%), Positives = 246/525 (46%), Gaps = 65/525 (12%) Query: 34 NCESIFTIVSSRLKNQ---VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +I+ + K + +Y L S+ + +H+ V F+K I + Sbjct: 5 DLNNIWEHILQEAKKNMQHLPDALYLRVTSSLIPMSLESHSIHIGVMQTFVKNLIDQQ-- 62 Query: 91 ETITKLFQEEHSRIQG--------------------------VEILVRSVALPSVEKTAS 124 I+K Q+ + + G ++ + LP + + + Sbjct: 63 PQISKALQDAITTVIGSPRDMVLFDFNQESIDTNFVDESLIDTPVVAPPMPLPPIVEEKA 122 Query: 125 -----------SPSITKLSPINTNISKSPIILGKQTISPVFG-------------SPLDS 160 P +P I P++ + S S L+ Sbjct: 123 HKEEFYTPVYQDPVYIDRTPAPVEIPDEPMVATTKKPSETTPTLQSDNVPVDLSLSNLNP 182 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ AI NA Sbjct: 183 AYRFDNYVTGNANRIPFGAAQNVAEFPGGDY-----NPLFIYGPSGLGKTHLMHAIGNAI 237 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + + E Sbjct: 238 KENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESRESTKTE 297 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R +I ++ Sbjct: 298 LFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIAIFRSL 357 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADEL 396 L K++ + I+ + + +VA + + R L GAF +L+ S + E Sbjct: 358 LEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLEYTKHA 417 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQ+AMYL + M S Sbjct: 418 LAGLVHTEEVNMVNIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRDMINES 477 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +P+I F RDHTT+LHA K+ K +E + K+ VE +K+ ++ Sbjct: 478 YPQIAAAFS-RDHTTILHAYDKITKEIEKNEETKRIVEEIKQKLT 521 >gi|116747453|ref|YP_844140.1| chromosomal replication initiator protein DnaA [Syntrophobacter fumaroxidans MPOB] gi|166215364|sp|A0LE53|DNAA_SYNFM RecName: Full=Chromosomal replication initiator protein DnaA gi|116696517|gb|ABK15705.1| chromosomal replication initiator protein DnaA [Syntrophobacter fumaroxidans MPOB] Length = 450 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 118/469 (25%), Positives = 217/469 (46%), Gaps = 32/469 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E + V +L+ + Y W L+F + + L F W++ + + Sbjct: 2 EQEWLQVRKKLQRSLSKGQYDLWVSTLEFLGIEDGNLILGCQNRFHIEWLREKLEAKLLP 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFG 155 + + ++ +E V A +P I P S + G Sbjct: 62 IASQHFRGVRKLEYRVAQGC------AAGAPEIEGAGPRQIAFSD---------VVKCVG 106 Query: 156 SPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 + RF F F+ G N+ A AA +A + +++ + GLGK+HL A Sbjct: 107 PAFNPRFTFDHFVVGGCNQFAYAAAMGMANN-----QQLYNQSVYLLSDTGLGKSHLTHA 161 Query: 216 IANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGK 274 + N R+P LRV Y+T E F ++++ K+ R D+LL++ ++FL GK Sbjct: 162 VGNYLRNRKPELRVQYVTTEQFANEMIFSLKNGNMEAFKNKFRTGCDVLLLEKIEFLSGK 221 Query: 275 -LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 IQ E + L+ L+D K V+ + P ++ L+ ++SRL GG+ P+ D++ R Sbjct: 222 EKIQKELVYTLDELMDRGKTVLCTGNAYPKDIPKLNSELQSRLGGGLLAPIDKPDFKTRI 281 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTAEI 392 I+K + + + EV+ ++A +T R+L+ L+ + + +T ++ Sbjct: 282 EIIKR-----KSHTENIRVPMEVVEYLADRITGDVRQLESCLVGLMAKSNILRTPITLDL 336 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 A E+ ++ + K+ +E IQ+++ ++ I+ +L S R + V R++ +YLS+ Sbjct: 337 AREVSQTML--DQLPKISVEQIQKIICANFRITLEELRSTSRRKQVALARKIGIYLSREY 394 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKML-ETDITLKKEVELLKRLI 500 T S IG+ F R H++VL+AV +V+K + E + LK+EVE L R + Sbjct: 395 TTESLQSIGKSF-QRSHSSVLYAVNEVQKGMGEANGRLKREVEYLSRRL 442 >gi|281411445|ref|YP_003345524.1| chromosomal replication initiator protein DnaA [Thermotoga naphthophila RKU-10] gi|281372548|gb|ADA66110.1| chromosomal replication initiator protein DnaA [Thermotoga naphthophila RKU-10] Length = 440 Score = 356 bits (913), Expect = 6e-96, Method: Composition-based stats. Identities = 129/434 (29%), Positives = 202/434 (46%), Gaps = 39/434 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 + +K +V + WF S+ N V SV F+K W++ +Y ++K + Sbjct: 3 ERILQEIKTRVNRKSWELWFSSFDVKSIEGNKVVFSVGNLFIKEWLEKKYYSVLSKAVKV 62 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 EI A P + P+ + V +PL+ Sbjct: 63 VLGNDATFEITY----------EAFEPHSSYSEPLVKKRA-------------VLLTPLN 99 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + F F+ G N A AA +A+ NPLFI+ VGLGKTHLLQ+I N Sbjct: 100 PDYTFENFVVGPGNSFAYHAALEVAKHPGR------YNPLFIYGGVGLGKTHLLQSIGNY 153 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQ 277 ++ +P+LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q Sbjct: 154 VVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQ 213 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E H N L DS KQ+V +DR P +L R+ SR Q G+ L D E R +I + Sbjct: 214 TELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKNIAR 273 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADEL 396 L I E + EEVL VA V + R L GA + LV++ + + + A L Sbjct: 274 KMLEIEHGE-----LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEIDLKEAILL 328 Query: 397 LSHLVNTGETKKM-RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + + K M I+++ +VAK + R ++LS+ R + R++ MY++K Sbjct: 329 LKDFIKSNRVKAMDPIDELIEVVAKVTGVPREEILSSSRNVKALTARRIGMYVAKNYLKS 388 Query: 456 SFPEIGRRFGDRDH 469 S I +F +R H Sbjct: 389 SLRTIAEKF-NRSH 401 >gi|322378946|ref|ZP_08053360.1| chromosomal replication initiation protein [Helicobacter suis HS1] gi|322379800|ref|ZP_08054097.1| chromosomal replication initiation protein [Helicobacter suis HS5] gi|321147768|gb|EFX42371.1| chromosomal replication initiation protein [Helicobacter suis HS5] gi|321148622|gb|EFX43108.1| chromosomal replication initiation protein [Helicobacter suis HS1] Length = 433 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 112/465 (24%), Positives = 204/465 (43%), Gaps = 43/465 (9%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLH--NIVHLSVPTNFLKAWIKNRYLETITKLF 97 + LK + + ++ + L+F + P ++ +IK RY + Sbjct: 3 EAILETLKADLSEFEFKTYVEILRFDEKASRADCFVFYAPNIWVCNYIKTRYSTLLENAI 62 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 VE+L P I SP+ K Sbjct: 63 GAYKGYPVSVEVL----------------------PREQQIKNSPL---KPLCQAHQNPS 97 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ F F T + GS N +A+ A +A+ NP+ VGLGKTH+L AI Sbjct: 98 LNPAFTFDTLVVGSCNHLAIKVASQVAQNSG------SYNPVLFFGGVGLGKTHILNAIG 151 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 N + R + V+Y+TAE F+ + + ++ +D R D LLIDD+QF GK + Sbjct: 152 NKACDRLQD--VLYVTAEQFLNDYVFRLGNHSMDKFQDKYRTRDYLLIDDVQFFGGKQMV 209 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N+L Q+V +D+PP +++ L R+ SR + G+ + E + +I+ Sbjct: 210 QEEFFHTFNALHSQGSQIVMTSDKPPRDIKGLADRLLSRFEMGMIASIQPPKLETKIAII 269 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADE 395 + + + ++ V+ ++A + R+++GA +L + + + + Sbjct: 270 NQKC-----QFNHIRMDAPVVEYLASHTNENIRQIEGALLRLNATAMLTGVSIDLSLVEA 324 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 +L + +++ +E + R+VAK N+ +D+ +N R R V R++ +YL++I+T Sbjct: 325 VLKDTIKESL-QEVSLEQVLRVVAKTLNLKPSDIRNNYRNRQVALARKLIIYLARILTNA 383 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S + + G +DH+ V A + V K + D K +E ++ I Sbjct: 384 STTALAQFLGMKDHSGVSKANKTVTKCMLEDKHTKLLIEEMRAKI 428 >gi|222100623|ref|YP_002535191.1| Chromosomal replication initiator protein dnaA [Thermotoga neapolitana DSM 4359] gi|221573013|gb|ACM23825.1| Chromosomal replication initiator protein dnaA [Thermotoga neapolitana DSM 4359] Length = 450 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 127/467 (27%), Positives = 225/467 (48%), Gaps = 40/467 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 + +K +V + WF + ++ N V SV F+K W++ +Y +++ + Sbjct: 13 ERILQEIKTRVNRKSWELWFNSFEVKTIEGNKVIFSVGNLFIKEWLEKKYHSVLSRAVKT 72 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 E+ S +++ S S ++ K+ + +PL+ Sbjct: 73 VLGHDATYELTYES--------------------FDSHTSYSEPLVKKKAV---LLTPLN 109 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + F F+ G N A A+ +A+ NPLFI+ VGLGKTHLLQ+I N Sbjct: 110 PAYTFENFVVGPGNSFAYHASLEVAKNPGK------YNPLFIYGGVGLGKTHLLQSIGNY 163 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQ 277 ++R+P+LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q Sbjct: 164 IVQREPDLRVMYITSEKFLNDLVDSMKEGKLAEFREKYRKKVDVLLIDDIQFLIGKTGVQ 223 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E H N L DS KQ+V +DR P L+ R+ SR Q G+ L D E R SI + Sbjct: 224 TELFHTFNELHDSGKQIVICSDREPHMLKEFQDRLISRFQMGLVAKLEPPDRETRKSIAR 283 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADEL 396 L + + E P+ ++ VA V + R L GA + LV++ + + + A L Sbjct: 284 KMLEVEEGELPEEVLD-----FVAENVDDNLRRLKGAIIKLLVYKETTGREVDLKEAIAL 338 Query: 397 LSHLVNTGETKKM-RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + + I+++ +V++ ++ + ++LS+ R + R++ MY++K Sbjct: 339 LKDFIKPERKPILDPIDELIEIVSRVMDVPKEEILSSSRNAKALMARRIGMYIAKTYLKS 398 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEK-MLETDITLKKEVELLKRLIS 501 S I +F +R H V +V+KV+ +L+ + LK ++ + IS Sbjct: 399 SLRTIAEKF-NRSHPVVADSVKKVKNSLLKGNRQLKMYIDEIVGEIS 444 >gi|24114988|ref|NP_709498.1| replication initiation protein DnaA [Shigella flexneri 2a str. 301] gi|24054240|gb|AAN45205.1| replication initiation protein DnaA [Shigella flexneri 2a str. 301] Length = 408 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 103/390 (26%), Positives = 181/390 (46%), Gaps = 27/390 (6%) Query: 57 SWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRI---QGVEILVRS 113 W + L+ + N + L P F+ W++++YL I L E+ + Sbjct: 1 MWIRPLQA-ELSDNTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKP 59 Query: 114 VALPSVEKTASSPSITKLSPINTNISKSPIILG-----KQTISPVFGSPLDSRFVFSTFI 168 V S+ + +P P + S ++ + F F+ Sbjct: 60 VTQTPQAAVTSNVAAPAQVAQTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFV 119 Query: 169 EGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLR 228 EG SN++A AA +A+ Y NPLF++ GLGKTHLL A+ N + R+PN + Sbjct: 120 EGKSNQLARAAACQVADNPGGAY-----NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK 174 Query: 229 VVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLL 288 VVY+ +E F+ A+++N K R++D LLIDD+QF I+++ ++ Sbjct: 175 VVYMHSERFVQDMVKALQNNAIEEFKRYYRSVDALLIDDIQFFA---IKNDLRKSFSTPF 231 Query: 289 DSAKQVVAAADRPPSELE---SLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQK 345 +V S E ++ R++SR G++V + + E R +IL + + Sbjct: 232 TPCWKVSTDHSHLGSLFERDNGVEDRLKSRFGWGLTVAIEPPELETRVAIL-----MKKA 286 Query: 346 EDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADELLSHLVNTG 404 ++ + + EV +A+ + ++ REL+GA N+++ +F +T + E L L+ Sbjct: 287 DENDIRLPGEVAFFIAKRLRSNVRELEGALNRVIANANFTGRAITIDFVREALRDLLALQ 346 Query: 405 ETKKMRIEDIQRMVAKHYNISRNDLLSNRR 434 K + I++IQ+ VA++Y I DLLS RR Sbjct: 347 -EKLVTIDNIQKTVAEYYKIKVADLLSKRR 375 >gi|291276244|ref|YP_003516016.1| chromosomal replication initiator protein [Helicobacter mustelae 12198] gi|290963438|emb|CBG39267.1| chromosomal replication initiator protein [Helicobacter mustelae 12198] Length = 429 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 114/465 (24%), Positives = 215/465 (46%), Gaps = 43/465 (9%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETITKLF 97 + KN+ + Y S F ++K N +S P +++ WIK +YL+ + ++ Sbjct: 4 KNLQEIFKNEFEIEEYDSIFSQIKIVENPQNSDVVSFIAPNVYIEKWIKTKYLQRLAEIL 63 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 ++ ++ + ++ K + + + + Sbjct: 64 EKHYNITPEIHVVT--------------------------AVKKSHVKSLKQGAKKMEAA 97 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L++ + F TFI+G SN+ A A+ I E Y NP+ + GLGKTHLL AI Sbjct: 98 LNASYTFETFIQGDSNKFAYEIAKKICEKQGKAY-----NPVLFYGGTGLGKTHLLNAIG 152 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 N I++ + V+Y+T+E F+ ++ ++ N ++ RN D LLIDD+QF GK I Sbjct: 153 NKVIEKNKS--VIYITSEQFLNDYSERLKSNTMEKFREKYRNCDYLLIDDIQFFAGKIQI 210 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 Q EF H N L KQ+V AD+ ++ L+ R++SR + G++ + E + I+ Sbjct: 211 QEEFFHTFNELHLKNKQIVITADKSLKQILGLEERLKSRCEWGITADIQPPGIETKIEII 270 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEIADE 395 K + I E IN++++ +A + + R+++G +L +T +A Sbjct: 271 KQKCIIHHVE-----INQDIIECLAYNIGGNIRQIEGIILKLNALPLLIGQPITLSMAQN 325 Query: 396 LLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 + + ++ + I I + A+ +NI +++ S R + + R++ +YLS+ + P Sbjct: 326 AIKD-IRKEVSENIDINAIIKATAREFNIKPSEITSKSRATKIAQARRIVIYLSRELIPH 384 Query: 456 SFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 S I + +DH+ V A K+ K L+ D L+ + +K + Sbjct: 385 SMAMIAQSLNMKDHSAVSKAGTKINKELKEDPALQLAINEIKSKL 429 >gi|15643688|ref|NP_228734.1| chromosomal replication initiation protein [Thermotoga maritima MSB8] gi|1169366|sp|P46798|DNAA_THEMA RecName: Full=Chromosomal replication initiator protein DnaA gi|168177182|pdb|2Z4R|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|168177183|pdb|2Z4R|B Chain B, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|168177184|pdb|2Z4R|C Chain C, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|168177185|pdb|2Z4S|A Chain A, Crystal Structure Of Domain Iii From The Thermotoga Maritima Replication Initiation Protein Dnaa gi|4981463|gb|AAD36007.1|AE001756_10 chromosomal replication initiator protein [Thermotoga maritima MSB8] gi|780792|gb|AAA65438.1| DnaA [Thermotoga maritima MSB8] Length = 440 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 131/434 (30%), Positives = 201/434 (46%), Gaps = 39/434 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 + +K +V + WF S+ N V SV F+K W++ +Y ++K + Sbjct: 3 ERILQEIKTRVNRKSWELWFSSFDVKSIEGNKVVFSVGNLFIKEWLEKKYYSVLSKAVKV 62 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 EI A P + P+ + V +PL+ Sbjct: 63 VLGNDATFEITY----------EAFEPHSSYSEPLVKKRA-------------VLLTPLN 99 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + F F+ G N A AA +A+ NPLFI+ VGLGKTHLLQ+I N Sbjct: 100 PDYTFENFVVGPGNSFAYHAALEVAKHPGR------YNPLFIYGGVGLGKTHLLQSIGNY 153 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQ 277 ++ +P+LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q Sbjct: 154 VVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQ 213 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E H N L DS KQ+V +DR P +L R+ SR Q G+ L D E R SI + Sbjct: 214 TELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADEL 396 L I E + EEVL VA V + R L GA + LV++ + + + A L Sbjct: 274 KMLEIEHGE-----LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILL 328 Query: 397 LSHLVNTGETKKM-RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + K M I+++ +VAK + R ++LSN R + R++ MY++K Sbjct: 329 LKDFIKPNRVKAMDPIDELIEIVAKVTGVPREEILSNSRNVKALTARRIGMYVAKNYLKS 388 Query: 456 SFPEIGRRFGDRDH 469 S I +F +R H Sbjct: 389 SLRTIAEKF-NRSH 401 >gi|257067224|ref|YP_003153479.1| chromosomal replication initiator protein DnaA [Brachybacterium faecium DSM 4810] gi|256558042|gb|ACU83889.1| chromosomal replication initiator protein DnaA [Brachybacterium faecium DSM 4810] Length = 565 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 117/352 (33%), Positives = 191/352 (54%), Gaps = 14/352 (3%) Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 S L+S++ F TF+ GSSNR A AA ++AE + Y NPLFI+ GLGKTHLL Sbjct: 215 DSRLNSKYTFDTFVIGSSNRFAQAAASAVAETPAKAY-----NPLFIYGGSGLGKTHLLH 269 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRD---NCALNLKDSLRNIDLLLIDDMQFL 271 A+ + + P++ V Y+ +E F F ++++ A + R+ID+LLIDD+QFL Sbjct: 270 AVGHYAQSLYPDVVVRYVNSEEFTNEFINSVQSGQFGKAQEFQRRYRDIDILLIDDIQFL 329 Query: 272 Q-GKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 Q F H N+L +S KQ+V +D PP EL + R+RSR + G+ + D E Sbjct: 330 QRAPETMEAFFHTFNTLYNSDKQIVITSDLPPKELGGFEDRMRSRFEMGLMTDVQPPDLE 389 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILT 389 R +IL+ ++A + + EVL ++A + T+ REL+GA ++ HS + + Sbjct: 390 TRIAILRKKVAQENTGE----VPHEVLEYIASHIATNIRELEGALIRVQALHSLSRQPMD 445 Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLS 449 +A+ +L L++ + ++ I A ++ +S +++ R R +V RQ+ MYL Sbjct: 446 VTLAESVLKDLLSHDDGAQITASTIIAQTATYFALSVEEIVGTGRSRRLVSARQIGMYLC 505 Query: 450 KIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 + +T IG FG RDHTTV+HA +K+ ++++ + +V L I Sbjct: 506 RELTDMPLIRIGEEFGGRDHTTVMHANKKISELMKERRAIFNQVTELTARIK 557 >gi|160914813|ref|ZP_02077027.1| hypothetical protein EUBDOL_00820 [Eubacterium dolichum DSM 3991] gi|158433353|gb|EDP11642.1| hypothetical protein EUBDOL_00820 [Eubacterium dolichum DSM 3991] Length = 459 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 119/472 (25%), Positives = 226/472 (47%), Gaps = 34/472 (7%) Query: 33 VNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + + I+ +K V ++ WF + + ++ ++VP K I + Y Sbjct: 15 MQLQQIWDKTLDLIKENSKVDTANFSVWFDGSQLFDIRDDLAIITVPYKVNKQIISDLYK 74 Query: 91 ETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTI 150 + I + +IL++ K S I K + +NI Sbjct: 75 DLIKEKLSIVLEHEVECQILLK--------KEVDSEYINKDALRRSNI------------ 114 Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 +F ++ + F +F+ G +NR A A+ S Y NPLFI + GLGKT Sbjct: 115 --LFEDKINPEYTFDSFVVGKNNREAHAASLSAC-----YYPGKFNNPLFIFGNSGLGKT 167 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLL AI N + +P +V+Y+ +E F+ A+++ +K+ + + D LLIDD+Q Sbjct: 168 HLLHAIGNYIKENRPEDKVLYIYSEDFVTLLIEAMKNKNVEEVKEKICSADYLLIDDIQR 227 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 L+ Q F ++ N L+ KQ+V +D P+EL+ ++ R+ SR G+SV +G ++E Sbjct: 228 LKQSTSQELFFNMYNKLIRDNKQIVITSDIHPTELKGIENRLISRFSSGLSVSVGSPEFE 287 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 +IL+ ++ +E + I +EVL ++A + R+L+GA N+L F+ T Sbjct: 288 TAKAILQKKIEGRNEE---ILIEDEVLDYLATRFASDVRKLEGALNELFFKSILYNPDTI 344 Query: 391 EI--ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 ++ A E+ T ++ + I++ V Y +++ + S R + + R +A+YL Sbjct: 345 DLKFAKEIFKENPMTVTNDELSVNKIKKAVCDFYGLTKTQIESKSRTKNIANARHIAVYL 404 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 + F +IG FG+RDH+T++ + K+ K+L+ ++ ++ +++ + Sbjct: 405 CRKHLDMPFAKIGLEFGNRDHSTIMSSYEKMVKLLKDKEQFQQALQQIEKQL 456 >gi|167041926|gb|ABZ06664.1| putative bacterial DnaA protein [uncultured marine microorganism HF4000_137B17] Length = 418 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 144/443 (32%), Positives = 242/443 (54%), Gaps = 30/443 (6%) Query: 62 LKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEK 121 + ++ V L+ PT F++ WI +RY + + + + IQ +E + S + Sbjct: 2 INLKKEFNHYVVLTAPTRFVRDWIVSRYADKMLDIIKTFKKSIQRIEFFIEESKEKSDKI 61 Query: 122 TASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQ 181 S I + ++ L++ F F+ G SN +A TAA+ Sbjct: 62 DFRR--------------DSQISSIENSLLNYNRFNLNN--SFDNFMVGESNELAYTAAR 105 Query: 182 SIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRF 241 + SH NPLFI++ VG+GKTHLL AI + + + ++++++AE FM+ F Sbjct: 106 KVCNQSSH------YNPLFIYSVVGMGKTHLLNAIG---LDIENSKQIMFISAERFMYHF 156 Query: 242 ASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADR 300 +I+ N + KD R ++ +IDD+QF+ GK +Q EF H N+L++ Q+V A+DR Sbjct: 157 IRSIKSNDMVKFKDFFRKANVFIIDDIQFVAGKEAMQEEFFHTFNALMERGSQIVVASDR 216 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK-NRLAISQKEDPKLNINEEVLMH 359 PS L+ + RI+SRL GG+ + + D +R IL+ I + + N+N+EV Sbjct: 217 SPSNLDRVQGRIKSRLSGGLVIDIQPPDLNLRIKILRSKFEDIKKNFNENYNLNDEVFKF 276 Query: 360 VARTVTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A +T+S RE+ GA N+++ +L +N K + +E IQ +V Sbjct: 277 LATEITSSIREMVGALNRVLAFSKINTKSPNIYECKRILKDFINDN-KKSINVESIQNIV 335 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 A ++N++ ++LS RR R++ RPRQ+AMYL+K T S PEIGR+F +RDHTTV+HAV+K Sbjct: 336 AVYFNLNIQEMLSPRRSRSLARPRQIAMYLAKKYTTNSLPEIGRKFSNRDHTTVIHAVKK 395 Query: 479 VEKMLETDITLKKEV-ELLKRLI 500 + ++++ D +K + E++KRL+ Sbjct: 396 INELIKNDNEIKHNITEIIKRLL 418 >gi|170287808|ref|YP_001738046.1| chromosomal replication initiator protein DnaA [Thermotoga sp. RQ2] gi|226735861|sp|B1LC08|DNAA_THESQ RecName: Full=Chromosomal replication initiator protein DnaA gi|170175311|gb|ACB08363.1| chromosomal replication initiator protein DnaA [Thermotoga sp. RQ2] Length = 440 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 132/434 (30%), Positives = 202/434 (46%), Gaps = 39/434 (8%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 + +K +V + WF S+ N V SV F+K W++ +Y ++K + Sbjct: 3 ERILQEIKTRVNRKSWELWFSSFDVKSIEGNKVVFSVGNLFIKEWLEKKYYSVLSKAVKV 62 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 EI A P + P+ + V +PL+ Sbjct: 63 VLGNDATFEITY----------EAFEPHSSYSEPLVKKRA-------------VLLTPLN 99 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + F F+ G N A AA +A+ NPLFI+ VGLGKTHLLQ+I N Sbjct: 100 PDYTFENFVVGPGNSFAYHAALEVAKHPGR------YNPLFIYGGVGLGKTHLLQSIGNY 153 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQ 277 ++ +P+LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q Sbjct: 154 VVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQ 213 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E H N L DS KQ+V +DR P +L R+ SR Q G+ L D E R SI + Sbjct: 214 TELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIAR 273 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQ-LVFRHSFAPILTAEIADEL 396 L I E + EEVL VA V + R L GA + LV++ + + + A L Sbjct: 274 KMLEIEHGE-----LPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILL 328 Query: 397 LSHLVNTGETKKM-RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPR 455 L + + K M I+++ +VAK SR ++LSN R + R++ MY++K Sbjct: 329 LKDFIKSNRVKAMDPIDELIEIVAKVTGASREEILSNSRNVKALTARRIGMYVAKNYLKS 388 Query: 456 SFPEIGRRFGDRDH 469 S I +F +R H Sbjct: 389 SLRTIAEKF-NRSH 401 >gi|303228570|ref|ZP_07315397.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-134-V-Col7a] gi|303230659|ref|ZP_07317409.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-049-V-Sch6] gi|302514714|gb|EFL56706.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-049-V-Sch6] gi|302516749|gb|EFL58664.1| chromosomal replication initiator protein DnaA [Veillonella atypica ACS-134-V-Col7a] Length = 539 Score = 353 bits (906), Expect = 4e-95, Method: Composition-based stats. Identities = 133/400 (33%), Positives = 210/400 (52%), Gaps = 12/400 (3%) Query: 108 EILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV--FGSPLDSRFVFS 165 E A P + + P+ + + T P+ S L+S + F Sbjct: 143 EFYTPVYADPVYIQRKEVDELIPDEPMFPVEQPQMVQTLQSTDIPIDLSSSQLNSGYRFD 202 Query: 166 TFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQP 225 +I G++NR+ AAQ+++E Y NPLFI+ GLGKTHL+ AI NA ++R P Sbjct: 203 NYITGNANRIPFGAAQNVSEHPGGDY-----NPLFIYGPSGLGKTHLMHAIGNAIVERYP 257 Query: 226 NLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLL 284 NL+V+ T+E FM F +IR +++ RNID+LLIDD+QFL+ K + EF + Sbjct: 258 NLKVMCTTSEKFMNLFIESIRKRQGELFRNTFRNIDVLLIDDIQFLENKEGTKTEFFNTF 317 Query: 285 NSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQ 344 N LLD+ KQ+V +D P++++ + R+RSR Q G + D E R +ILK + Sbjct: 318 NELLDNNKQIVLTSDTMPNDMDQFEERLRSRFQAGYVATMENPDLETRIAILKALVEKEN 377 Query: 345 KEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF---APILTAEIADELLSHLV 401 ++ L I+ + + +VA + R L GAFN+L+ S + E + LS ++ Sbjct: 378 NKNRNLVIDNDAINYVALQFDENIRVLQGAFNKLIGTASLEQRTSSIDLEYTKKTLSDII 437 Query: 402 NTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIG 461 T + IE IQ ++ ++NI + DLL +R PRQ+AMYL + + S+P+I Sbjct: 438 TTERVTLIDIESIQDFISTYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRDVINESYPQIA 497 Query: 462 RRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 F RDHTT+LHA K+ K ++ + K+ + +K +S Sbjct: 498 AAFS-RDHTTILHAYDKISKEIDKNPETKQIILDIKSKLS 536 Score = 47.7 bits (112), Expect = 0.005, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 3/123 (2%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 + I+ + K + P +Y+S L S+ +N +H+ V +F+K+ I+++ +T+ Sbjct: 5 DINDIWERILQVAKQTLPPAIYSSLSTSLIPMSIDNNSIHIGVMQSFIKSVIESQ--QTV 62 Query: 94 TKLFQEEHSRIQGVEI-LVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 +KL + ++ G E+ +V P + ++P + NT + S + +S Sbjct: 63 SKLLTDAIKQVTGKELNMVLLDLFPQKDDVPTAPHVADTFTENTAENTSTNTIENTVVSD 122 Query: 153 VFG 155 V Sbjct: 123 VDN 125 >gi|57233687|ref|YP_180756.1| chromosomal replication initiator protein DnaA [Dehalococcoides ethenogenes 195] gi|57224135|gb|AAW39192.1| chromosomal replication initiator protein DnaA [Dehalococcoides ethenogenes 195] Length = 445 Score = 353 bits (905), Expect = 4e-95, Method: Composition-based stats. Identities = 123/472 (26%), Positives = 218/472 (46%), Gaps = 41/472 (8%) Query: 35 CESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 + ++ ++ QV + +WF + + + VP F+ +++ I Sbjct: 6 AQELWETALGEIELQVNKPNFRTWFAKTVGLKYDGSEFIIGVPNTFVAEYLEVNQRSLIE 65 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 K I + + + S + A++P + + Sbjct: 66 KTLI----NITHSPVELGFQLVQSAQVQAAAPQTAREKTV-------------------- 101 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 SP + R+ F +FI GS NR+A A+ + + Y NPL+I+A+ GLGKTHLLQ Sbjct: 102 -SPFNPRYTFESFIVGSCNRLAHAASLAATQNPGKSY-----NPLYIYAAAGLGKTHLLQ 155 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK 274 AI + + + +Y++ E F F S+IR+ + R++DLLL+DD+QF+ GK Sbjct: 156 AIGH--LANLNRRKALYVSGEQFTTDFISSIRNGQTEEFRARYRDVDLLLLDDVQFIGGK 213 Query: 275 LIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 E H N L +S +Q+V +AD PP L L R+RSR + G+++ + D + R Sbjct: 214 EQTEECLFHTFNDLHNSNRQIVISADSPPKSLPQLAERLRSRFEWGLTIEIEPPDEKTRL 273 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP-ILTAEI 392 +L+ + E +N + L ++A+ V + REL+G+ N+++ +T ++ Sbjct: 274 ELLQ-----LKAEQSGTELNMDTLEYLAQEVKHNIRELEGSLNRVLAYARLLRATITPDL 328 Query: 393 ADELLSHL--VNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 A LS + E +R +I V++ + I +LL R + RQ AM++ K Sbjct: 329 AARALSDIGSRPVRENSPLRPGNIISAVSQVFQIPATELLGAARDKDTALARQFAMFMLK 388 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 S EIG+ G R +TV HA K++ LE L+ ++ ++ +S+ Sbjct: 389 QQNSASLVEIGQSLGGRSASTVSHACDKIQLELENSAFLRLKMSEVQNQLSQ 440 >gi|269797070|ref|YP_003310970.1| chromosomal replication initiator protein DnaA [Veillonella parvula DSM 2008] gi|269093699|gb|ACZ23690.1| chromosomal replication initiator protein DnaA [Veillonella parvula DSM 2008] Length = 524 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 143/525 (27%), Positives = 246/525 (46%), Gaps = 65/525 (12%) Query: 34 NCESIFTIVSSRLKNQ---VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYL 90 + +I+ + K + +Y L S+ + +H+ V F+K I + Sbjct: 5 DLNNIWEHILLEAKKNMQHLPDALYLRVTSSLIPMSLESHSIHIGVMQTFVKNLIDQQ-- 62 Query: 91 ETITKLFQEEHSRIQG--------------------------VEILVRSVALPSVEKTAS 124 I+K Q+ + + G ++ + LP + + + Sbjct: 63 PQISKALQDAITTVIGSHRDMVLFDFNQESIDTNFVDESLIDTPVVAPPMPLPPIVEEKA 122 Query: 125 -----------SPSITKLSPINTNISKSPIILGKQTISPVFG-------------SPLDS 160 P +P +I P+I + + S L+ Sbjct: 123 HQEEFYTPVYQDPVYIDRAPAPVDIPDEPMIATPKKPTETMSTLQSDNVPVDLSLSNLNP 182 Query: 161 RFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANAS 220 + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ AI NA Sbjct: 183 AYRFDNYVTGNANRIPFGAAQNVAEFPGGDY-----NPLFIYGPSGLGKTHLMHAIGNAI 237 Query: 221 IKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHE 279 + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + + E Sbjct: 238 KENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESRESTKTE 297 Query: 280 FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNR 339 + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R +I ++ Sbjct: 298 LFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIAIFRSL 357 Query: 340 LAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIADEL 396 L K++ + I+ + + +VA + + R L GAF +L+ S + E Sbjct: 358 LEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLEYTKHA 417 Query: 397 LSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRS 456 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQ+AMYL + M S Sbjct: 418 LAGLVHTEEVNIVNIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRDMINES 477 Query: 457 FPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 +P+I F RDHTT+LHA K+ K +E + K+ V +K+ ++ Sbjct: 478 YPQIAAAFS-RDHTTILHAYDKITKEIEKNEETKRMVAEIKQKLT 521 >gi|167755165|ref|ZP_02427292.1| hypothetical protein CLORAM_00670 [Clostridium ramosum DSM 1402] gi|167705215|gb|EDS19794.1| hypothetical protein CLORAM_00670 [Clostridium ramosum DSM 1402] Length = 448 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 128/478 (26%), Positives = 219/478 (45%), Gaps = 46/478 (9%) Query: 34 NCESIFTIVSSRLKNQ-------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 + I+ + L+ Q + + S F+ K S+ +N V ++ P +F IK Sbjct: 3 DNSKIWQLCLDTLEKQNLPEERKIDKVIMESVFRSAKIASINNNKVIITTPFSFNVETIK 62 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 N + I + + +EI+ SV +P Sbjct: 63 NN-QKDIEDILSGMLASSINLEIVGEEDFKKSVAVKQETP-------------------- 101 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 F L+ F F+ GSSNR+A AA ++ NPLFI+++ G Sbjct: 102 -------FRDNLNRTLTFDNFVVGSSNRMAQNAALLVSTNPGSN-----FNPLFIYSNPG 149 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL AI N + + P LR+ Y+T++ F+ A++ + D +N+D+LLID Sbjct: 150 LGKTHLLNAIGNYAKEVNPALRIRYITSKDFVDEVIGAMKGRDGDEIYDKYKNLDILLID 209 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL K F H+ N L+++ KQ+V +D+ P EL+ ++ R+ SR G+S + Sbjct: 210 DIQFLFNKEKSSEIFFHIFNELINNNKQIVITSDKMPEELQGIESRLISRFNSGLSFGID 269 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 ++E +IL+ I ++P L I ++V+ +A R L+GA +L F Sbjct: 270 PPEFETARAILEK--KIENLDNPSLIIQDDVVDFMANHYCKDIRSLEGALKRLFFCSIMN 327 Query: 386 PILTAEIA---DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 ++A + + + E I + A+ Y ++ + L+S + R + PR Sbjct: 328 HTNNIDMAFALESFKDDKIVQNPKSSLTKESILKTTAEFYYLTISQLISKNKTRKLTTPR 387 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++ MYL + + +F EIG F +RDH+TV+ A +VE ++ D K + LK + Sbjct: 388 EMCMYLMRELLDITFAEIGATFSNRDHSTVMKACARVETKIKKDPDYKLAINKLKDKL 445 >gi|94263748|ref|ZP_01287555.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] gi|93455848|gb|EAT06011.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] Length = 447 Score = 353 bits (905), Expect = 5e-95, Method: Composition-based stats. Identities = 123/468 (26%), Positives = 217/468 (46%), Gaps = 29/468 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L ++ V+ W + L + L+ P F W+ +L I Sbjct: 2 IWPEVRKILHQRLPESVFNLWIEPLSCLQEGDGRLELAGPDRFFCNWVAENHLADIQAAL 61 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 E + V V A S E+ +L + N ++ Sbjct: 62 AEVGRQGLEVRFQVDGQAGASDEEAGKGAEQLRLPRMPRNHNRI--------------RT 107 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L R+ F F+ G SN +A +A ++IA + +FI+A GLGK+HL A+A Sbjct: 108 LHPRYTFDEFMVGDSNALAYSACEAIATGTTQAEPC-----VFINAGTGLGKSHLTHAVA 162 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-RNIDLLLIDDMQFLQGK-L 275 + P R+ LT++ IR+N K+ R D+LL++D+Q L G+ Sbjct: 163 HHLYNNAPGTRLCCLTSQQLTAELVHHIRNNSMEQFKEKFQRRCDVLLVEDVQTLSGRSK 222 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q E ++SLLDS ++V+ R P E+ LD +RSRL G+ + D + R I Sbjct: 223 TQVELAEAVDSLLDSGRRVLFTGSRSPREIPDLDEGVRSRLASGLVTTINPPDIKTRRLI 282 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIAD 394 ++ + KL ++EE++ ++A V R+++ A L + + + T E+ Sbjct: 283 IRR-----KAVFHKLALDEEMVAYIAEKVRGDIRKVESAMVGLKAKANLRRVAPTMEMVR 337 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+++ V ET + E I+ VA + +S +L S R + + PRQV+MYL++ +T Sbjct: 338 EVVA-TVAGEETPGLNSEAIRDFVAAQFKLSVEELRSKSRKKEITFPRQVSMYLARKLTD 396 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 IG+ F DRDH+TV+H++R + + + + +++ ++E L + + + Sbjct: 397 EGLAGIGKAF-DRDHSTVVHSIRVINEAVARNGSVRGQIEHLTKRLRQ 443 >gi|261368844|ref|ZP_05981727.1| ATPase [Subdoligranulum variabile DSM 15176] gi|282569116|gb|EFB74651.1| ATPase [Subdoligranulum variabile DSM 15176] Length = 436 Score = 352 bits (904), Expect = 6e-95, Method: Composition-based stats. Identities = 124/468 (26%), Positives = 213/468 (45%), Gaps = 41/468 (8%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLH-NIVHLSVPTNFLKAWIKNRYLET 92 + + + + Y + +K S + N + L + F+ + +RY Sbjct: 3 SINDVLDAAKAYCREHTAEATYQYYISDIKAVSFENSNTITLEIRNAFILGIVSDRYTAM 62 Query: 93 ITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISP 152 + F+ + G ++ + V E+ K P Sbjct: 63 LKDAFK----SVLGFDVDLVFVTPKKEEEPEKPKLEEKNLPSGRY--------------- 103 Query: 153 VFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 F F FI+G SN+ A AAQ++A S Y NPLFI+ GLGKTHL Sbjct: 104 --------DFTFENFIKGPSNQFAYAAAQAVAANPSGAY-----NPLFIYGPSGLGKTHL 150 Query: 213 LQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 L AI K P+ +VY+ E F +A++ + R D+LLIDD+QFL Sbjct: 151 LNAIQIEIKKNHPDFNIVYVDCEMFTNEIITAVKTATTEQFRQKYRQADVLLIDDIQFLA 210 Query: 273 GKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 GK Q EF H N+L + +Q+V A+DRP E++SL+ R+R+R + G++ + D+E Sbjct: 211 GKESTQEEFFHTFNTLHNDGRQIVIASDRPAKEIKSLEERLRTRFEWGLTADIQPPDFET 270 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTA 390 R +I+K + E L++ ++V ++A + + R+L+GA +L + I Sbjct: 271 RVAIVKR-----KAELLNLDLPDDVAEYIANHLKQNIRQLEGAVKKLNAYYMLEGIAPCI 325 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 + + +N + + IE I VA+ YN+ D+ +R V RQ+ MY+ + Sbjct: 326 GVTTTAIKDTLNDSQPIPVTIEKILNEVARTYNVMPADIRGKKRNANVSAARQMTMYIIR 385 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKR 498 +T S IG+ F RDH+TV+++++ + + + D LK+ + + Sbjct: 386 EVTGMSMEAIGQEF-QRDHSTVVYSIKTMAENITKDQHLKEMCSDIMK 432 >gi|167011107|ref|ZP_02276038.1| chromosomal replication initiator protein dnaA [Francisella tularensis subsp. holarctica FSC200] Length = 432 Score = 352 bits (902), Expect = 1e-94, Method: Composition-based stats. Identities = 124/441 (28%), Positives = 202/441 (45%), Gaps = 48/441 (10%) Query: 39 FTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQ 98 + ++K + Y +W + + N+ + + K IK++Y I Q Sbjct: 4 WDKCLKKIKKNLSTFEYKTWIKPIHVEQ-NSNLFTVYCNNEYFKKHIKSKYGNLILSTIQ 62 Query: 99 EEHSRIQGVEIL--------------------------VRSVALPSVEKTASSPSITKLS 132 E H +E V K P I K S Sbjct: 63 ECHGNDLIIEYSNKKFSGEKITEVITAGPQANFFSTTSVEIKDESEDTKVVQEPKILKKS 122 Query: 133 PINTNISKSPI--------ILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIA 184 S + I K+ FG PL ++VF +F+ G +N++A AA ++ Sbjct: 123 NSKDFSSSQELFGFDEAMLITAKEDEEYSFGLPLKEKYVFDSFVVGDANKIARAAAMQVS 182 Query: 185 EVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASA 244 + NPLFI+ GLGKTHL+QAI N + + PN +++Y +E F+ + ++ Sbjct: 183 INPGKLH-----NPLFIYGGSGLGKTHLMQAIGNHAREVNPNAKIIYTNSEQFIKDYVNS 237 Query: 245 IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPS 303 IR + R+ D+LLIDD+QF+ GK EF H N+L ++ KQ++ +D+ P+ Sbjct: 238 IRLQDQDEFQRVYRSADILLIDDIQFIAGKEGTAQEFFHTFNALYENGKQIILTSDKYPN 297 Query: 304 ELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVART 363 E+E L+ R+ SR G++V + + D E R +IL + + D + E +A Sbjct: 298 EIEGLEERLVSRFGYGLTVSVDMPDLETRIAIL-----LKKAHDLGQKLPNETAAFIAEN 352 Query: 364 VTTSGRELDGAFNQLVFRHSFA-PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHY 422 V T+ REL+GA N+++ F T E+A L ++ KK++I++IQ++VA Sbjct: 353 VRTNVRELEGALNRVLTTSKFNHKDPTIEVAQACLRDVIKIQ-EKKVKIDNIQKVVADLV 411 Query: 423 NISRNDLLSNRRVRTVVRPRQ 443 I DL SN+R R + RPRQ Sbjct: 412 GIRVKDLTSNQRSRNIARPRQ 432 >gi|320527128|ref|ZP_08028315.1| replication initiator protein DnaA [Solobacterium moorei F0204] gi|320132456|gb|EFW24999.1| replication initiator protein DnaA [Solobacterium moorei F0204] Length = 457 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 119/473 (25%), Positives = 223/473 (47%), Gaps = 33/473 (6%) Query: 32 EVNCESIFTIVSSRLKNQ--VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRY 89 E + ++ + L + V + ++F+ +++ V + P+ K I+++ Sbjct: 6 EQYLKEVWDNLLQYLNDNQLVDGVIIENFFRPCFLYAITDEKVIIVAPSVIHKQIIQSQ- 64 Query: 90 LETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQT 149 + I F + + + V S+ K ++P + K Sbjct: 65 NKEIEASFIDILNVDHNFIVEVHLKDELSIHKVVTAP------------------ISKID 106 Query: 150 ISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGK 209 S P+ F F+ G NR + AA + A NPLFI+ + GLGK Sbjct: 107 TSDFVSLPIQKDRNFDNFVVGDCNRESHAAALACAMSPGK-----FFNPLFIYGNSGLGK 161 Query: 210 THLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQ 269 THLL +IAN +K P +V Y + F+ +AIR+N K + ++DLLL+DD+Q Sbjct: 162 THLLMSIANYVLKENPTKKVYYTESLKFVETVVNAIRNNKIDEFKQYMYSVDLLLVDDIQ 221 Query: 270 FLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHD 328 FL GK F + N L+++ KQ+ A+DR P E++ L+ R+ SR G+SV + + Sbjct: 222 FLAGKEKSHEVFFTIYNELVNNRKQICIASDRLPKEIKGLEDRLISRFSSGLSVGIDSPE 281 Query: 329 YEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRH-SFAPI 387 E +IL+ ++ S +++++ L ++A + + R+L+GA+N+++F F P Sbjct: 282 SETSLAILQMKIKTSSYSIE--DVDQDGLNYIASNFSGNVRDLEGAWNRVLFYAIQFQPD 339 Query: 388 ---LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQV 444 + + L + + + + I ++VA +Y ++R + S R + + R + Sbjct: 340 GGCIRFDTIMNALKNQSVVSDKTGLSPKKIIKVVADYYGLTRQQVTSKTRTKNIANARHI 399 Query: 445 AMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLK 497 ++YL + + S+ +IG FG RDH+T++ A KVE + D + V+ ++ Sbjct: 400 SIYLCRKLLDISYIKIGEEFGGRDHSTIISACTKVESQIAKDKAMSAAVKEIE 452 >gi|294792397|ref|ZP_06757544.1| ATPase involved in DNA replication initiation [Veillonella sp. 6_1_27] gi|294456296|gb|EFG24659.1| ATPase involved in DNA replication initiation [Veillonella sp. 6_1_27] Length = 474 Score = 351 bits (900), Expect = 2e-94, Method: Composition-based stats. Identities = 126/408 (30%), Positives = 211/408 (51%), Gaps = 10/408 (2%) Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 ++ H + V + P ++ + P + + S Sbjct: 70 EKAHQEEFYTPVYQDPVYIDRAPAPVEIPDEPMVATPKKSTETMPTLQSDNVPVDLSLSN 129 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ AI Sbjct: 130 LNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDY-----NPLFIYGPSGLGKTHLMHAIG 184 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 NA + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + Sbjct: 185 NAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESREST 244 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 + E + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R +I Sbjct: 245 KTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIAIF 304 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIA 393 ++ L K++ + I+ + + +VA + + R L GAF +L+ S + E Sbjct: 305 RSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLEYT 364 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQ+AMYL + M Sbjct: 365 KHALAGLVHTEEVNMVNIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRDMI 424 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+P+I F RDHTT+LHA K+ K +E + K+ V +K+ ++ Sbjct: 425 NESYPQIAAAFS-RDHTTILHAYDKITKEIEKNEETKRMVAEIKQKLT 471 >gi|162446889|ref|YP_001620021.1| chromosomal replication initiator protein [Acholeplasma laidlawii PG-8A] gi|189044629|sp|A9NE65|DNAA_ACHLI RecName: Full=Chromosomal replication initiator protein DnaA gi|161984996|gb|ABX80645.1| chromosomal replication initiator protein [Acholeplasma laidlawii PG-8A] Length = 452 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 129/475 (27%), Positives = 221/475 (46%), Gaps = 41/475 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH-SVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +++ + L+ + Y F + + ++ + V FLK I Y+ I Sbjct: 5 STLWQTILQDLEKLYNEETYNELFLPVTSTFKDQNGLLTMVVANEFLKNRINKLYIAKIN 64 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +L + S ++ + + + + P+ K TI Sbjct: 65 ELATKYSSTPVRLKFVSQEEVI-----------------------EEPVADRKLTIDYRQ 101 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G L+S + F +F+ G SN A A +A+ NP +I VGLGKTHL+Q Sbjct: 102 G-NLNSTYTFDSFVVGKSNMFAFRMAMKVADQPG-----AVANPFYIFGDVGLGKTHLMQ 155 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFAS--AIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI N + R++Y+ A+ F+ F S + N ++ID++L+DD+Q + Sbjct: 156 AIGNYILDNDVEKRILYVKADNFIEDFVSLLSRNKNKTEEFNAKYKDIDVILVDDIQIMA 215 Query: 273 G-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 Q EF L + L + KQ+V +D+P S+L ++ PR+ +R + G+SV + + + E Sbjct: 216 NASKTQMEFFKLFDYLYLNNKQIVITSDKPASQLTNIMPRLTTRFEAGLSVDIQIPELEH 275 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTA 390 R SILK + A D L ++E++L +A + RE++GA +L+ F +T Sbjct: 276 RISILKRKTA---TLDANLEVSEDILTFIASQFAANIREMEGALIRLISYAQTFNLEITM 332 Query: 391 EIADELLSHLVNTGET----KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +E L ++ T + + + IQ +VA ++ +S DL+ +R PR +AM Sbjct: 333 NVVEEALGAVLKTKKKTNDLNENNYDKIQSIVADYFQVSLPDLIGKKRHAKFTLPRHIAM 392 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL K+ + IG F DRDH+TVL A KVE+ + D LK V+ + + I Sbjct: 393 YLIKLKYNIPYKTIGSLFNDRDHSTVLSACEKVERDMRMDSNLKFAVDSIVKKID 447 >gi|294794203|ref|ZP_06759339.1| ATPase involved in DNA replication initiation [Veillonella sp. 3_1_44] gi|294454533|gb|EFG22906.1| ATPase involved in DNA replication initiation [Veillonella sp. 3_1_44] Length = 474 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 126/408 (30%), Positives = 210/408 (51%), Gaps = 10/408 (2%) Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 ++ H + V + P ++ P + + S Sbjct: 70 EKAHQEEFYTPVYQDPVYIDRAPAPVDIPDEPMIATPKKPTETMPTLQSDNVPVDLSLSN 129 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L+ + F ++ G++NR+ AAQ++AE Y NPLFI+ GLGKTHL+ AI Sbjct: 130 LNPAYRFDNYVTGNANRIPFGAAQNVAEFPGGDY-----NPLFIYGPSGLGKTHLMHAIG 184 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-I 276 NA + P+++V+ +T+E FM F ++ N +++ RNID+L+IDD+QFL+ + Sbjct: 185 NAIKENHPHMKVMSITSENFMNIFVETLQRNQGKLFRNTFRNIDVLMIDDIQFLESREST 244 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSIL 336 + E + N LL++ KQ+V +D P+++E + R+RSR Q G + D E R +I Sbjct: 245 KTELFNTFNELLNNNKQIVLTSDTMPNDMEQFEDRLRSRFQAGYIATMENPDLETRIAIF 304 Query: 337 KNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP---ILTAEIA 393 ++ L K++ + I+ + + +VA + + R L GAF +L+ S + E Sbjct: 305 RSLLEREYKKNRIIRIDNDSINYVALQFSENVRVLQGAFTKLIGTASIDQRLESIDLEYT 364 Query: 394 DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMT 453 L+ LV+T E + IE IQ V+ ++NI + DLL +R PRQ+AMYL + M Sbjct: 365 KHALAGLVHTEEVNIVNIESIQNFVSSYFNIKKQDLLGKKRKAQFAFPRQIAMYLCRDMI 424 Query: 454 PRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 S+P+I F RDHTT+LHA K+ K +E + K+ V +K+ ++ Sbjct: 425 NESYPQIAAAFS-RDHTTILHAYDKITKEIEKNEETKRMVAEIKQKLT 471 >gi|294788716|ref|ZP_06753957.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Simonsiella muelleri ATCC 29453] gi|294483198|gb|EFG30884.1| DNA replication initiator protein, transcriptional regulator of replication and housekeeping genes [Simonsiella muelleri ATCC 29453] Length = 546 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 131/392 (33%), Positives = 204/392 (52%), Gaps = 17/392 (4%) Query: 112 RSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGS 171 R L +K S P I+K+ ++ + L + F T +EG Sbjct: 167 RMSNLRPNKKNEVSEENKSHKPSAIEIAKAKEDAEQRHSQ----TNLSPEYTFDTLVEGK 222 Query: 172 SNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVY 231 N +A A+SIAE NP F++ S GLGKTHL+QAI N +K RV Y Sbjct: 223 GNHLAAAVAKSIAEKPG----DSMYNPFFVYGSTGLGKTHLVQAIGNELLKLNTKARVRY 278 Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDS 290 + ++ ++ F + +R+ K + +LL+IDD+QF+QGK EF L Sbjct: 279 MHSDEYLKTFMATVRNKTWDTFKQQYLHYNLLIIDDIQFIQGKDRTMEEFFFLFEHFHSR 338 Query: 291 AKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKL 350 +Q++ D+ PS LE+++ R+ SR G+++ L + EMR IL+ + E + Sbjct: 339 NQQIILTCDQLPSSLENMEKRLISRFSWGMTIKLEPPELEMRVDILER-----KAEAVGI 393 Query: 351 NINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTAEI--ADELLSHLVNTGETKK 408 + E+ + +A+ V + REL+GA N+++ R F T +I A + L +V + K Sbjct: 394 TLLEDAALFIAQNVKQNVRELEGALNRVLARCRFEKRTTIDIDLATDALQDIVASNY-KP 452 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + IE I + VA +++I +DLL +R RTV RPRQ+AM L+K +T S P IG FG RD Sbjct: 453 ITIELIMKAVADYHHIRMSDLLGKKRTRTVARPRQMAMALAKELTNMSLPAIGDAFGGRD 512 Query: 469 HTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 HTTV+HAV+ + K+ + L ++ E L LI Sbjct: 513 HTTVMHAVKTIAKLRIDEPELGQDYEKLLILI 544 >gi|224368958|ref|YP_002603122.1| DnaA [Desulfobacterium autotrophicum HRM2] gi|223691675|gb|ACN14958.1| DnaA [Desulfobacterium autotrophicum HRM2] Length = 469 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 118/475 (24%), Positives = 228/475 (48%), Gaps = 23/475 (4%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 E + V S +K+ + Y W Q + + + N V LS P +F K IK YL I Sbjct: 2 EQYWERVKSEMKHSLPDHSYRMWIQPMGYQASGSNEVTLSCPNSFSKKRIKENYLAGIEA 61 Query: 96 LFQEEHSRIQGVEILVRSVALPSVEKTASSPSITK-------LSPINTNISKSPIILGKQ 148 F + ++++V + + A++ + LS + L Sbjct: 62 QFTKLGLGQIKIDLMVETKGVKKKASKAATQPVNGGECETPLLSFPRRPSRPMQMALPGL 121 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 I G L + F F+ G ++ A +AA S+A+ S +++ + GLG Sbjct: 122 NIRSDSGRMLKKGYTFDRFVVGDNSDFAYSAALSLAQTSSVNNGA-----IYLLSDTGLG 176 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-RNIDLLLIDD 267 K+HL QA+ + I + + +V Y+TAE F S+I++N K+ R D+L+++D Sbjct: 177 KSHLSQAVGHHVISQGFSDKVYYVTAEDFTNEMVSSIKNNTINGFKEKYRRKCDVLILED 236 Query: 268 MQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGL 326 + FL GK Q E L+ L+D+ K+++ + P ++ ++ +++SRL G+ + Sbjct: 237 VHFLSGKDATQKELAMTLDYLMDAEKKIIFSGCYLPDDIPKMNEQLKSRLTLGMVTKIDP 296 Query: 327 HDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FA 385 +++ R ILKN + + I +V ++A+ + + R+L+ + + + Sbjct: 297 PNFKTRVKILKN-----KSKYDGFVIPNDVTEYLAQELCDNVRQLESGLMGVARKSALLG 351 Query: 386 PILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVA 445 + +A +LS + K + ++ I+++V +++S +L+S R +TVV+PRQ+A Sbjct: 352 EKIDINLARGVLSTISRNK--KNITVDVIKKLVCSEFSLSEKELVSTSRKQTVVKPRQMA 409 Query: 446 MYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 ++L++ T + IGR F +R H T ++++ VEK L+ +++ L R I Sbjct: 410 IFLARKYTDQPLKTIGRSF-NRYHATAIYSINAVEKKLKQQGGFTEQMNYLCRKI 463 >gi|239616412|ref|YP_002939734.1| chromosomal replication initiator protein DnaA [Kosmotoga olearia TBF 19.5.1] gi|259645253|sp|C5CH91|DNAA_KOSOT RecName: Full=Chromosomal replication initiator protein DnaA gi|239505243|gb|ACR78730.1| chromosomal replication initiator protein DnaA [Kosmotoga olearia TBF 19.5.1] Length = 447 Score = 350 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 123/466 (26%), Positives = 219/466 (46%), Gaps = 35/466 (7%) Query: 40 TIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQE 99 + S LK ++ + +WF + V + + SV F+K W++++Y I+K +E Sbjct: 3 NRIISILKKRLARKTWDNWFTTFQVKKVTDDKIIFSVGNLFIKDWLQSKYGSVISKAIKE 62 Query: 100 EHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD 159 + + EI+ + P N S P+ S L+ Sbjct: 63 AYGKNLDYEIVYET-----------------TEPEAFNKSNESYKGPLVKKKPLLISNLN 105 Query: 160 SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANA 219 + + F F+ G NRV + I+ NP F++ VGLGKTHLLQAIA+ Sbjct: 106 ANYTFENFVVGPENRVLYEVSLEISRNPGR------YNPFFVYGMVGLGKTHLLQAIAHK 159 Query: 220 SIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQFLQGKL-IQ 277 ++ P +RV+Y+T+E FM +I+ + ++ R D+LLIDD+QFL GK +Q Sbjct: 160 IMELHPEMRVLYITSEQFMNDMIDSIKYGSVRDFREHYRKKADVLLIDDIQFLIGKNGVQ 219 Query: 278 HEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILK 337 E H N L D+ KQ+V +DR P EL R+ SR Q G+ + + + + RF I K Sbjct: 220 KELFHTFNELYDAGKQIVICSDRNPEELNGFHDRLVSRFQMGMVMEICPPEKDTRFKIAK 279 Query: 338 NRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIADEL 396 E +++ ++V +A +V + R L G +L+ + S + A + +++ Sbjct: 280 KF-----AERESVSLPDDVAQLLADSVDGNLRILRGVIIKLIVQSSINKERIGAALTNQI 334 Query: 397 LSHLVNT--GETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 L+ T + + I + +S ++ R + +V RQ+ MY+ K Sbjct: 335 LAAFNKTTVSIKRMKEEDLIMSTIEAVMGVSPEEIKGTSRKQNIVLSRQLLMYILKRHHG 394 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVE-KMLETDITLKKEVELLKRL 499 +S EI + G R H+TV+H+++K+E +++ + +K+++ + Sbjct: 395 KSIKEISKITGKR-HSTVIHSIKKIEMSVIKGNTVVKEKLAKILNT 439 >gi|295106381|emb|CBL03924.1| chromosomal replication initiator protein DnaA [Gordonibacter pamelaeae 7-10-1-b] Length = 534 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 142/539 (26%), Positives = 252/539 (46%), Gaps = 73/539 (13%) Query: 31 LEVN-CESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKN 87 +E E ++ V ++K N + P ++F RL+ ++ + + L+ +F+K WI+ Sbjct: 1 MESEKLEQVWRAVCDQVKSYNNIDPSQINAFFSRLQPQAMSEDFLMLTADNDFIKTWIER 60 Query: 88 RYLETITKLFQEEHSRIQGVEILVR----------------------------------- 112 Y++ I + + + V I V Sbjct: 61 HYVDFIKQALMDLYRTAFTVLIEVDIAAEAARANPAAPAPATGASTAGAPAAPATSAGAA 120 Query: 113 ----------------SVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGS 156 +V P+V++TA+ + ++ L Sbjct: 121 TGTPASDGGHAAAGEPAVVQPAVQQTATEQAPRAAHAAAAYEARGCEELEGDPYDEDETD 180 Query: 157 PLD---SRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 D S F F+ G SNR+A + A ++AE+ + LNPLFI+ GLGKTHLL Sbjct: 181 GPDRPTSTLTFENFVIGDSNRMAYSMAVAVAEMPGKAH----LNPLFIYGKSGLGKTHLL 236 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCAL-----NLKDSLRNIDLLLIDDM 268 +AI N + PNL +Y+ + + + A + N K D+LLIDD+ Sbjct: 237 RAIQNYVHETMPNLSTIYVDSAELLSDYMEASAAHDKEKSSYKNFKTRYEEADVLLIDDV 296 Query: 269 QFLQGKL-IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 Q+LQGK + N L +QVV +ADR P + +D R +SR G + + Sbjct: 297 QYLQGKKQTLDIVFQIFNKLTGQGRQVVLSADRAPKNI-DIDERYKSRFNSGGTFDIQPP 355 Query: 328 DYEMRFSILKNRLAISQKEDPK--LNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF- 384 + E + I+K+ + + + K I +++ M++A + +++ REL A +++++ +F Sbjct: 356 EIETKLGIVKSFVDEYRATEGKASFAIPDDIQMYIAESSSSNIRELKSAVTKVIYQMTFF 415 Query: 385 -APILTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQ 443 P L+ + LL + + G +K++ I DIQ+ V Y +S DL+ +R R ++ RQ Sbjct: 416 NQPDLSLDDVRSLLENHFSGGPSKRLTIADIQKEVETFYKVSHADLVGKKRTRNIIYARQ 475 Query: 444 VAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +A+YLS+ M F +IG++F +RDH+TV+++V VE+ ++ L++E+E LK+LI E Sbjct: 476 IAIYLSRQMLDLPFNDIGKKF-NRDHSTVMYSVTNVEEKMKESRELREELETLKQLIRE 533 >gi|169351632|ref|ZP_02868570.1| hypothetical protein CLOSPI_02413 [Clostridium spiroforme DSM 1552] gi|169291854|gb|EDS73987.1| hypothetical protein CLOSPI_02413 [Clostridium spiroforme DSM 1552] Length = 448 Score = 350 bits (897), Expect = 5e-94, Method: Composition-based stats. Identities = 127/479 (26%), Positives = 217/479 (45%), Gaps = 46/479 (9%) Query: 34 NCESIFTIVSSRLKNQ-------VGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIK 86 + I+ + L+ Q + + S F+ + S+ +N V ++ P +F IK Sbjct: 3 DNSKIWQLCLDTLEKQTLPEERKIDKVIMESVFRNAQIASINNNKVTITTPFSFNVETIK 62 Query: 87 NRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILG 146 N L I + + VEIL S+ + Sbjct: 63 NN-LSDIEDILSGMLASQVTVEILGEDEFNKSIIQAKKE--------------------- 100 Query: 147 KQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVG 206 VF L+ F F+ G SNR+A AA ++ NPLFI+++ G Sbjct: 101 ------VFKDNLNKSLTFENFVVGGSNRMAQNAALLVSTNPGSN-----FNPLFIYSNPG 149 Query: 207 LGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLID 266 LGKTHLL AI N + + PNL + Y+T++ F+ A++ + + + +D+LLID Sbjct: 150 LGKTHLLNAIGNYAKEINPNLNIRYITSKDFVDEVIGAMKGKDGDEIYEKYKQLDILLID 209 Query: 267 DMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG 325 D+QFL K F H+ N L+++ KQ+V +D+ P +L+ ++ R+ SR G+S + Sbjct: 210 DIQFLFNKEKSSEIFFHIFNELINNNKQIVITSDKMPEDLQGIESRLISRFNSGLSFGID 269 Query: 326 LHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFA 385 ++E +IL+ I ++P L I E+V+ +A R L+GA +L F Sbjct: 270 PPEFETARAILEK--KIENLDNPSLIIQEDVIDFMASHYCRDIRSLEGALKRLFFCSIMN 327 Query: 386 PILTAEIA---DELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPR 442 ++A + T + E I + A+ Y ++ + L+S + R + PR Sbjct: 328 CTNNIDMAFALESFKDDKKVTTPKTALTKEIILKTTAEFYYLTIDQLISKNKTRKLTTPR 387 Query: 443 QVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ MYL + + +F EIG F +RDH+TV+ A +VE + D K + LK ++ Sbjct: 388 EMCMYLMRELLDITFSEIGMTFSNRDHSTVMKACARVEAKIAKDSDYKLAINKLKEKLN 446 >gi|257789780|ref|YP_003180386.1| chromosomal replication initiator protein DnaA [Eggerthella lenta DSM 2243] gi|317489243|ref|ZP_07947760.1| chromosomal replication initiator protein DnaA [Eggerthella sp. 1_3_56FAA] gi|325832244|ref|ZP_08165243.1| chromosomal replication initiator protein DnaA [Eggerthella sp. HGA1] gi|257473677|gb|ACV53997.1| chromosomal replication initiator protein DnaA [Eggerthella lenta DSM 2243] gi|316911644|gb|EFV33236.1| chromosomal replication initiator protein DnaA [Eggerthella sp. 1_3_56FAA] gi|325486080|gb|EGC88534.1| chromosomal replication initiator protein DnaA [Eggerthella sp. HGA1] Length = 520 Score = 349 bits (896), Expect = 5e-94, Method: Composition-based stats. Identities = 137/520 (26%), Positives = 247/520 (47%), Gaps = 58/520 (11%) Query: 35 CESIFTIVSSRLK--NQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLET 92 E +++ V ++K N + P ++F RL ++ + ++ +F+K WI+ Y+E Sbjct: 6 LEQVWSEVCGQVKSYNNIDPSQINAFFSRLHPQAMSDGFLMITADNDFIKTWIERHYVEF 65 Query: 93 ITKLFQEEHSRIQGVEILVR----------------------------------SVALPS 118 I + + + V I V S P+ Sbjct: 66 IKRALNDLYHMPFTVIIEVDITAAEPPAPAPAPPAAQAAPAATMATAAETPAPVSSPQPA 125 Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLD------SRFVFSTFIEGSS 172 A++ S ++ + + + LD S F F+ G S Sbjct: 126 PAPAANAASSPQIDAGRPEAHRGAVGEEVAGVGAKREIALDGPDSPASTLTFENFVIGDS 185 Query: 173 NRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYL 232 NR+A + A ++AE+ + LNPLFI+ GLGKTHL++AI N + P L +Y+ Sbjct: 186 NRMAYSMAVAVAEMPGKAH----LNPLFIYGKSGLGKTHLMRAIQNYINETMPQLSTIYV 241 Query: 233 TAEYFMWRFASA-----IRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEFCHLLNS 286 + + + A + + N K D+LLIDD+Q+LQGK + N Sbjct: 242 DSAELLSDYMEASAAHDKQKSSYKNFKTRYEEADVLLIDDVQYLQGKKQTLDIVFQIFNK 301 Query: 287 LLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKE 346 L +QVV +ADR P + +D R RSR G + + + E + I+K+ + ++ Sbjct: 302 LTSQGRQVVLSADRAPKNI-DIDERYRSRFNSGGTFDIQPPEIETKLGIVKSFVDEYRES 360 Query: 347 D--PKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLSHLVN 402 + NI +++ M++A + +++ REL A +++++ +F P L + LL + Sbjct: 361 EGSHDFNIPDDIQMYIAESSSSNIRELKSAVTKVIYQMTFFNQPDLKLDDVRTLLENHFT 420 Query: 403 TGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGR 462 G +K++ I DIQ+ V Y +S DL+ +R R ++ RQ+A+YL + M F +IG+ Sbjct: 421 GGPSKRLTIADIQKEVENFYKVSHADLVGKKRTRNIIYARQIAIYLCRQMLDLPFNDIGK 480 Query: 463 RFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +F +RDH+TV+++V VE+ ++ + L++E+E L+ LI+E Sbjct: 481 KF-NRDHSTVMYSVTNVEEKMKENRELREELEALRGLINE 519 >gi|218885110|ref|YP_002434431.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226735802|sp|B8DN19|DNAA_DESVM RecName: Full=Chromosomal replication initiator protein DnaA gi|218756064|gb|ACL06963.1| chromosomal replication initiator protein DnaA [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 498 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 126/502 (25%), Positives = 216/502 (43%), Gaps = 53/502 (10%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKL 96 SI+ + + L+ + P ++ W L V +++ L P F+ AW+++R L+ I + Sbjct: 3 SIWGQIQNILEKSLNPGLFKVWISPL-AAEVQDDVLRLVAPNEFVAAWVRDRLLDDIVQA 61 Query: 97 FQEEHSRIQGVEILVRS---------------------VALPSVEKTASSPSITKLSPIN 135 V + + + T P++ S + Sbjct: 62 ATTVLGSAPTVVVDAAPQGAGSLSPRMGRAGASASAAVPGANAADGTQPVPAVQISSAVQ 121 Query: 136 TNISKS-------------PIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQS 182 ++S P LG P L+ RF F +F+ G +N +A A++ Sbjct: 122 AVAARSASGVGARAAHVAQPSQLGLPLDMPAPNRALNWRFSFDSFVVGPNNELAFAASRG 181 Query: 183 IAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIK--RQPNLRVVYLTAEYFMWR 240 I T+ + LF+ + GLGKTHL+QA+ A + + RV YLTAE F R Sbjct: 182 ICR------ETLSADTLFLSSGPGLGKTHLMQAVGRALCEASNRAAPRVEYLTAEEFATR 235 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAKQVVAAAD 299 +A++ K R++D+LL++D+ FLQGK +Q E + +L +VV ++ Sbjct: 236 LIAALKAREVDRFKARYRDVDVLLLEDVHFLQGKERMQDEVLATVKALKSRGSRVVLSSS 295 Query: 300 RPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMH 359 +L++LD ++ SR G + +E R IL + ++ + + V Sbjct: 296 FAARDLKNLDTQLVSRFCSGFLAHIDKPGFETRRRILC-----EKARLHQVMLPDNVTDL 350 Query: 360 VARTVTTSGRELDGAFNQLVFRHS-FAPILTAEIADELLSHLVNTGETKKMRIEDIQRMV 418 +A + T R+++ + LV + ++ E+A E+L H + M E I R V Sbjct: 351 LADRIRTDVRQIESCLHNLVLKAKLLNRQISMEMAWEVLGHY--AQQEVVMDFEGIVRKV 408 Query: 419 AKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRK 478 + + IS L S R R V R YL++ T S EIG RF R H+TVL + Sbjct: 409 CEGFGISPKQLNSRSRKREYVVARNSVFYLARKHTDLSLKEIGDRFSRR-HSTVLKGITS 467 Query: 479 VEKMLETDITLKKEVELLKRLI 500 +E+ + + L ++V LI Sbjct: 468 IEREMSRETPLGRQVTNTLSLI 489 >gi|94266099|ref|ZP_01289816.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] gi|93453344|gb|EAT03778.1| chromosomal replication initiator protein, DnaA [delta proteobacterium MLMS-1] Length = 447 Score = 348 bits (894), Expect = 9e-94, Method: Composition-based stats. Identities = 123/468 (26%), Positives = 217/468 (46%), Gaps = 29/468 (6%) Query: 38 IFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLF 97 I+ V L+ ++ V+ W + L + L+ P F W+ +L I Sbjct: 2 IWPEVRKILQKRLPESVFNLWIEPLSCLEEGDGRLELAGPDRFFCNWVAENHLTDIQAAL 61 Query: 98 QEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP 157 +E V V A S E+ +L + N ++ Sbjct: 62 KEMDREGLAVRFQVDRQAGASEEEAGEGAEQLRLPRMPRNHNRV--------------RT 107 Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 L R+ F F+ G SN +A +A ++IA + +FI+A GLGK+HL A+A Sbjct: 108 LHPRYTFDEFMVGDSNALAHSACEAIATGTTQAEPC-----VFINAGTGLGKSHLTHAVA 162 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSL-RNIDLLLIDDMQFLQGK-L 275 + P R+ LT++ IR+N K+ R D+LL++D+Q L G+ Sbjct: 163 HHLYNNAPGTRLCCLTSQQLTAELVHHIRNNSMEQFKEKFQRRCDVLLVEDVQTLSGRSK 222 Query: 276 IQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSI 335 Q E ++SLLDS ++V+ R P E+ LD +RSRL G+ + D + R I Sbjct: 223 TQVELAEAVDSLLDSGRRVLFTGSRSPREIPDLDEGVRSRLASGLVTTINPPDIKTRRLI 282 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI-LTAEIAD 394 ++ + KL ++EE++ ++A V R+++ A L + + I T E+ Sbjct: 283 IRR-----KAVFHKLALDEEMVAYIAEKVRGDIRKVESAIVGLKAKANLRRIAPTTEMVR 337 Query: 395 ELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTP 454 E+++ V E + E I+ VA + +S +L S R + + PRQV+MYL++ +T Sbjct: 338 EVVA-TVAGEEAPGLNSEAIRDFVAAQFKLSVEELRSKSRKKEITFPRQVSMYLARKLTD 396 Query: 455 RSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 IG+ F DRDH+TV+H++R + + + + +++ ++E L + + + Sbjct: 397 EGLAGIGKAF-DRDHSTVVHSIRVINEAVARNGSVRGQIEHLTKRLRQ 443 >gi|103485499|ref|YP_615060.1| chromosomal replication initiation protein [Sphingopyxis alaskensis RB2256] gi|122984662|sp|Q1GN68|DNAA_SPHAL RecName: Full=Chromosomal replication initiator protein DnaA gi|98975576|gb|ABF51727.1| chromosomal replication initiator protein DnaA [Sphingopyxis alaskensis RB2256] Length = 453 Score = 348 bits (894), Expect = 9e-94, Method: Composition-based stats. Identities = 147/475 (30%), Positives = 242/475 (50%), Gaps = 27/475 (5%) Query: 31 LEVNCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVL--HNIVHLSVPTNFLKAWIKNR 88 + + +++ V+ L+ +G + W + ++F +V L + F WI R Sbjct: 1 MSGDAAALWPRVAEGLRRDLGARTFDHWLKPVRFADYCALSGVVTLETASRFSANWINER 60 Query: 89 YLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQ 148 + + + ++++ ++ V + A AS P T Sbjct: 61 FGDRLELAWRQQLPAVRSVSVRGGVAATERAATLASVPLPT-------------FDAPAA 107 Query: 149 TISPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLG 208 + D R F F+ SN + + A + NPL++ + G G Sbjct: 108 PAANPALLGFDPRLSFDRFVVARSNIL-----AANAARRMAMVERPQFNPLYLCSGTGQG 162 Query: 209 KTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDM 268 KTHLLQAIA P ++ ++AE FM F A+R + K LR DLLL+DD+ Sbjct: 163 KTHLLQAIAQDYAAAHPTATIILMSAEKFMLEFVGAMRGGDMMAFKARLRAADLLLLDDL 222 Query: 269 QFLQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLH 327 QF+ GK Q E H ++ L+ + K++V ADRPP+ L+ ++ R+ SRL GG+ + Sbjct: 223 QFVIGKNSTQEELLHTIDDLMTAGKRLVVTADRPPAMLDGVEARLLSRLSGGLVADIEAP 282 Query: 328 DYEMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI 387 + ++R I++ RLA P + + ++V+ + + T + REL+GA N+L+ + Sbjct: 283 EDDLRERIIRQRLAA----MPMVEVPDDVIAWLVKHFTRNIRELEGALNKLLAYAALTGA 338 Query: 388 -LTAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +A++ L+ V + + + I++IQR V HY + R+D+ S RRVR V RPRQVAM Sbjct: 339 RIDLMLAEDRLAENVRSARPR-ITIDEIQRAVCAHYRLDRSDMSSKRRVRAVARPRQVAM 397 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 YL+K +TPRS+PEIGRRFG RDH+TV+HAVR VE + D L E+ ++R ++ Sbjct: 398 YLAKELTPRSYPEIGRRFGGRDHSTVIHAVRTVEALRVADSELDAEIAAIRRSLN 452 >gi|14194681|sp|Q9KHU8|DNAA_ACHLA RecName: Full=Chromosomal replication initiator protein DnaA gi|8515411|gb|AAF75986.1|AF248639_2 DNA replication initiator protein [Acholeplasma laidlawii PG-8A] Length = 445 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 128/473 (27%), Positives = 220/473 (46%), Gaps = 41/473 (8%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFH-SVLHNIVHLSVPTNFLKAWIKNRYLETIT 94 +++ + L+ + Y F + + ++ + V FLK I Y+ I Sbjct: 5 STLWQTILQDLEKLYNEETYNELFLPVTSTFKDQNGLLTMVVANEFLKNRINKLYIAKIN 64 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +L + S ++ + + + + P+ K TI Sbjct: 65 ELATKYSSTPVRLKFVSQEEVI-----------------------EEPVADRKLTIDYRQ 101 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 G L+S + F +F+ G SN A A +A+ NP +I VGLGKTHL+Q Sbjct: 102 G-NLNSTYTFDSFVVGKSNMFAFRMAMKVADHPG-----AVANPFYIFGDVGLGKTHLMQ 155 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFAS--AIRDNCALNLKDSLRNIDLLLIDDMQFLQ 272 AI N + R++Y+ A+ F+ F S + N ++ID++L+DD+Q + Sbjct: 156 AIGNYILDNDVEKRILYVKADNFIEDFVSLLSRNKNKTEEFNAKYKDIDVILVDDIQIMA 215 Query: 273 G-KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEM 331 Q EF L + L + KQ+V +D+P S+L ++ PR+ +R + G+SV + + + E Sbjct: 216 NASKTQMEFFKLFDYLYLNNKQIVITSDKPASQLTNIMPRLTTRFEAGLSVDIQIPELEH 275 Query: 332 RFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHS-FAPILTA 390 R SILK + A D L ++E++L +A + RE++GA +L+ F +T Sbjct: 276 RISILKRKTA---TLDANLEVSEDILTFIASQFAANIREMEGALIRLISYAQTFNLEITM 332 Query: 391 EIADELLSHLVNTGET----KKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAM 446 + +E L ++ T + + + IQ +VA ++ +S DL+ +R PR +AM Sbjct: 333 NVVEEALGAVLKTKKKTNDLNENNYDKIQSIVADYFQVSLPDLIGKKRHAKFTLPRHIAM 392 Query: 447 YLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRL 499 YL K+ + IG F DRDH+TVL A KVE+ + D LK V+ + + Sbjct: 393 YLIKLKYNIPYKTIGSLFNDRDHSTVLSACEKVERDMRMDSNLKFAVDSIVKK 445 >gi|218660627|ref|ZP_03516557.1| chromosomal replication initiation protein [Rhizobium etli IE4771] Length = 321 Score = 348 bits (892), Expect = 2e-93, Method: Composition-based stats. Identities = 219/306 (71%), Positives = 258/306 (84%), Gaps = 3/306 (0%) Query: 151 SPVFGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKT 210 SP+FGSPLDSRF F TF+EGSSNRVAL AA++IAE G VR NPLF+H++VGLGKT Sbjct: 19 SPLFGSPLDSRFTFDTFVEGSSNRVALAAAKTIAEA---GSGAVRFNPLFVHSTVGLGKT 75 Query: 211 HLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQF 270 HLLQAIANA+++ LRVVYLTAEYFMWRFA+AIRDN AL LKDSLRNIDLL+IDDMQF Sbjct: 76 HLLQAIANAAVQNPRALRVVYLTAEYFMWRFATAIRDNDALTLKDSLRNIDLLIIDDMQF 135 Query: 271 LQGKLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYE 330 LQGK+IQHEFCHLLN LLDSAKQVV AADR P ELESLDPR+RSRLQGGV++ L DYE Sbjct: 136 LQGKMIQHEFCHLLNMLLDSAKQVVVAADRAPWELESLDPRVRSRLQGGVAIELDAPDYE 195 Query: 331 MRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPILTA 390 MR ILK RLA +++EDP L I ++L HVAR +T SGREL+GAFNQL+FR SF P L+ Sbjct: 196 MRLEILKRRLAAARQEDPSLEIPADLLQHVARNITASGRELEGAFNQLIFRRSFEPNLSI 255 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E DELL+HLV +GE +++RIEDIQR+VA+HYN+SR +L+SNRR R +V+PRQ+AMYLSK Sbjct: 256 ERVDELLAHLVGSGEPRRVRIEDIQRIVARHYNVSRQELVSNRRTRVIVKPRQIAMYLSK 315 Query: 451 IMTPRS 456 +TPRS Sbjct: 316 TLTPRS 321 >gi|317153893|ref|YP_004121941.1| chromosomal replication initiator protein DnaA [Desulfovibrio aespoeensis Aspo-2] gi|316944144|gb|ADU63195.1| chromosomal replication initiator protein DnaA [Desulfovibrio aespoeensis Aspo-2] Length = 451 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 119/473 (25%), Positives = 216/473 (45%), Gaps = 32/473 (6%) Query: 36 ESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITK 95 ++ + + + L+ + P ++A W + L V + LS P +F+ W+++R L+ I + Sbjct: 3 KAAWMQIRTSLEKSLNPGLFAVWIKPLDGV-VEGGRLTLSAPNDFVANWVRDRLLQVIRE 61 Query: 96 LFQEEHSRIQGVEIL--VRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 E + I+ + A P + + + + + I + P + Sbjct: 62 AAAEVMGGDPKITIVANLEKAAKPVAPVGRAVAAEPRATHLGLPIVEGPRPIPVH----- 116 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 + RF F F+ G SN +A A++S+ + + + LF+ + GLGKTHLL Sbjct: 117 -----NWRFSFDDFVVGPSNELACAASKSLCD------SAFSSDHLFLSSGPGLGKTHLL 165 Query: 214 QAIANASIK--RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR-NIDLLLIDDMQF 270 ++ N + + NL+V L++E F R AI+ K R N+D+LL++D+ F Sbjct: 166 HSVGNQLCRAANRKNLKVACLSSEDFATRMVLAIKSRQVDVFKAQFRENLDVLLLEDVHF 225 Query: 271 LQGK-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 QGK +Q E L +L + +V+ + P E +D R+ SR G + D Sbjct: 226 FQGKEKMQEELLCTLTALRERGCKVLLTSSFMPKEFSGVDNRLVSRFCSGFLAHINRPDL 285 Query: 330 EMRFSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APIL 388 E R I+ + + ++++ EV +A +TT R+L+ + LV + + Sbjct: 286 ETRRRIV-----LEKARKLQVSVPVEVSELLAERITTDIRQLESCLSNLVLKARLLNRAV 340 Query: 389 TAEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYL 448 T +A E+L + +I + K Y++S ++L S R R VV R A YL Sbjct: 341 TLNLAWEVLDNY--AVYNSAPDFFNIVEFICKSYDLSEDELKSKSRKRQVVLARNTAFYL 398 Query: 449 SKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 ++ T S +IG + G R H+TVL + KVE+ + L +++E ++ Sbjct: 399 ARKHTELSLKDIGDKLGRR-HSTVLKGITKVEREISLQTPLGRQIEQTADRLT 450 >gi|154148526|ref|YP_001405623.1| chromosomal replication initiator protein DnaA [Campylobacter hominis ATCC BAA-381] gi|153804535|gb|ABS51542.1| chromosomal replication initiator protein DnaA [Campylobacter hominis ATCC BAA-381] Length = 437 Score = 344 bits (883), Expect = 2e-92, Method: Composition-based stats. Identities = 126/469 (26%), Positives = 218/469 (46%), Gaps = 41/469 (8%) Query: 37 SIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLS--VPTNFLKAWIKNRYLETIT 94 SI + LKNQ+ + + ++ ++LKF+ ++ ++ +I +Y + I Sbjct: 3 SIQDKILQSLKNQISTEEWENYIKKLKFNDKASKPDYIIYIASNPYIAKFINTKYSKKIA 62 Query: 95 KLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVF 154 +++ VE V+ V + I+ K+ ++I+ Sbjct: 63 DIYE--------VETGVKPVVI-----------------ISDGKEKNLKKDQNKSINKFK 97 Query: 155 GSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQ 214 + L F F FI G SNR A T A+++AE Y NPLFI+ + GLGKTHLLQ Sbjct: 98 STILSGSFSFENFIVGDSNRFAYTCAKAVAENPGERY-----NPLFIYGNSGLGKTHLLQ 152 Query: 215 AIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQ-G 273 +I N IK V+ +T+E F I N K+ R DLLLIDD+Q L Sbjct: 153 SIGNYCIKD--GKFVICVTSEQFANELKFHIETNSTDKFKEKYRTCDLLLIDDIQLLSTR 210 Query: 274 KLIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRF 333 K E H N L + Q+V D+PP L+ + R+ SR + G+ + D + Sbjct: 211 KAAIDELFHTFNELKNKNCQIVITNDKPPQLLKDFESRLVSRFESGLVANINPPDLNTKI 270 Query: 334 SILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF-APILTAEI 392 IL + L +N++V+ ++A + + RE++G Q+ S ++ + Sbjct: 271 GILTK-----KAGLNGLTLNKDVIEYIAANLGDNVREMEGILTQIRAYQSLINTEISLDF 325 Query: 393 ADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIM 452 L ++ + E+I +M+ +N+ +++ R + V + R+VA+Y+ K + Sbjct: 326 VKANLKDSFYKNNSENVGFEEILQMICSEFNVKPSEIRGKNRTKNVAKARRVAIYICKNL 385 Query: 453 TPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLIS 501 T + P+I FG +DH+ V H +RK+++++ D LK +VE L+ I Sbjct: 386 TQNTMPKIASFFGLKDHSAVSHNIRKLKELMTDDNYLKLKVEELENKIK 434 >gi|317486879|ref|ZP_07945690.1| chromosomal replication i