RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] (502 letters) >gnl|CDD|178902 PRK00149, dnaA, chromosomal replication initiation protein; Reviewed. Length = 450 Score = 546 bits (1410), Expect = e-156 Identities = 195/472 (41%), Positives = 283/472 (59%), Gaps = 25/472 (5%) Query: 34 NCESIFTIVSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETI 93 N +S++ V RLK+++ Y +W + LK S+ N + L VP F+K WI+ YL+ I Sbjct: 1 NLQSLWEKVLERLKDELSEQEYETWIKPLKALSLEDNTLTLYVPNRFVKDWIEKNYLDLI 60 Query: 94 TKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPV 153 + QE VE + + ++ + +P P + Sbjct: 61 EEALQELTGENPKVEFVRPAAPSAEAPAAPAAAPPSSAAPAAAAEEAEP----------L 110 Query: 154 FGSPLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLL 213 FGSPL+ ++ F F+ G SNR+A AA ++AE Y NPLFI+ VGLGKTHLL Sbjct: 111 FGSPLNPKYTFDNFVVGKSNRLAHAAALAVAENPGKAY-----NPLFIYGGVGLGKTHLL 165 Query: 214 QAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG 273 AI N +++ PN +VVY+T+E F F +A+R+N K+ R++D+LLIDD+QFL G Sbjct: 166 HAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAG 225 Query: 274 K-LIQHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMR 332 K Q EF H N+L ++ KQ+V +DRPP EL L+ R+RSR + G++V + D E R Sbjct: 226 KERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETR 285 Query: 333 FSILKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTA 390 +ILK + E+ +++ +EVL +A+ +T++ REL+GA N+L+ S PI T Sbjct: 286 IAILKKKA-----EEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPI-TL 339 Query: 391 EIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSK 450 E+A E L L+ + KK+ IE+IQ++VA++YNI +DL S R R + RPRQ+AMYL+K Sbjct: 340 ELAKEALKDLLA-AQKKKITIENIQKVVAEYYNIKVSDLKSKSRTRNIARPRQIAMYLAK 398 Query: 451 IMTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLISE 502 +T S PEIGR FG RDHTTVLHAVRK+EK+LE D LK++VE LKR + Sbjct: 399 ELTDLSLPEIGRAFGGRDHTTVLHAVRKIEKLLEEDPELKEDVEELKRKLKS 450 >gnl|CDD|161840 TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). Length = 405 Score = 465 bits (1200), Expect = e-131 Identities = 172/431 (39%), Positives = 247/431 (57%), Gaps = 31/431 (7%) Query: 42 VSSRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEH 101 + RL++++ Y +WF+ LK SV + +SVP F K WI+ YL+ I +L QE Sbjct: 3 ILERLRDELSEQAYNTWFKPLKLLSVEGGTLIISVPNEFAKDWIEKNYLDLIEELLQELF 62 Query: 102 SRIQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSR 161 +E +V + + P+ K P S P SPL+ + Sbjct: 63 GEEIEIEFVVGD------PEESLEPTSAKPEPKPPEASAEP----------TNNSPLNPK 106 Query: 162 FVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASI 221 + F F+ G SNR+A AA ++AE Y NPLFI+ VGLGKTHLL AI N + Sbjct: 107 YTFDNFVVGKSNRLAHAAALAVAENPGKAY-----NPLFIYGGVGLGKTHLLHAIGNEIL 161 Query: 222 KRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKL-IQHEF 280 + PN +VVY+++E F F +A+R+N K+ R++DLLLIDD+QFL GK Q EF Sbjct: 162 ENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGKERTQEEF 221 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 H N+L ++ KQ+V +DRPP EL L+ R+RSR + G+ V + D E R +IL+ + Sbjct: 222 FHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSF--APILTAEIADELLS 398 L + +EVL +A+ + ++ REL+GA N+L+ S PI T E+A E L Sbjct: 282 EEE-----GLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPI-TLELAKEALK 335 Query: 399 HLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFP 458 L+ + K++ IE+IQ +VAK+YNI +DL S +R R +VRPRQ+AMYL+K +T S P Sbjct: 336 DLLR-AKKKEITIENIQEVVAKYYNIKVSDLKSKKRTRNIVRPRQIAMYLAKELTDLSLP 394 Query: 459 EIGRRFGDRDH 469 EIGR FG RDH Sbjct: 395 EIGRAFGGRDH 405 >gnl|CDD|184497 PRK14086, dnaA, chromosomal replication initiation protein; Provisional. Length = 617 Score = 226 bits (578), Expect = 1e-59 Identities = 127/375 (33%), Positives = 204/375 (54%), Gaps = 25/375 (6%) Query: 119 VEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSP-----LDSRFVFSTFIEGSSN 173 V + P +P+ +P L Q +P G L+ ++ F TF+ G+SN Sbjct: 238 VHRGGPGPPERDDAPVVPIRPSAPGPLAAQP-APAPGPGEPTARLNPKYTFDTFVIGASN 296 Query: 174 RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 R A AA ++AE + Y NPLFI+ GLGKTHLL AI + + + P RV Y++ Sbjct: 297 RFAHAAAVAVAEAPAKAY-----NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS 351 Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LIQHEFCHLLNSLLDSAK 292 +E F F ++IRD + + R +D+LL+DD+QFL+ K Q EF H N+L ++ K Sbjct: 352 SEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANK 411 Query: 293 QVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNI 352 Q+V ++DRPP +L +L+ R+R+R + G+ + + E R +IL+ + Q LN Sbjct: 412 QIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQ-----LNA 466 Query: 353 NEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAPI----LTAEIADELLSHLVNTGETKK 408 EVL +A ++ + REL+GA L+ +FA + + + + +L L+ + Sbjct: 467 PPEVLEFIASRISRNIRELEGA---LIRVTAFASLNRQPVDLGLTEIVLRDLIPEDSAPE 523 Query: 409 MRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRD 468 + I A ++ ++ DL R R +V RQ+AMYL + +T S P+IG++FG RD Sbjct: 524 ITAAAIMAATADYFGLTVEDLCGTSRSRVLVTARQIAMYLCRELTDLSLPKIGQQFG-RD 582 Query: 469 HTTVLHAVRKVEKML 483 HTTV+HA RK+ ++ Sbjct: 583 HTTVMHADRKIRALM 597 >gnl|CDD|172578 PRK14088, dnaA, chromosomal replication initiation protein; Provisional. Length = 440 Score = 218 bits (558), Expect = 2e-57 Identities = 144/463 (31%), Positives = 222/463 (47%), Gaps = 40/463 (8%) Query: 44 SRLKNQVGPDVYASWFQRLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSR 103 +K +V + WF S+ N V SV F+K W++ +Y ++K +E + Sbjct: 7 QEIKTRVNRKSWELWFSSFDVKSIEGNKVVFSVGNLFIKEWLEKKYGSVLSKAVKEVLGK 66 Query: 104 IQGVEILVRSVALPSVEKTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFV 163 EI A P + P+ + K ++L +PL+ + Sbjct: 67 DATFEI----------TYEAFEPHSSYSEPL---VKKRAVLL----------TPLNPDYT 103 Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G N A AA +A+ R NPLFI+ VGLGKTHLLQ+I N ++ Sbjct: 104 FENFVVGPGNSFAYHAALEVAK------NPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQN 157 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN-IDLLLIDDMQFLQGKL-IQHEFC 281 +P+LRV+Y+T+E F+ ++++ ++ R +D+LLIDD+QFL GK +Q E Sbjct: 158 EPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELF 217 Query: 282 HLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLA 341 H N L DS KQ+V +DR P +L R+ SR Q G+ L D E R I + L Sbjct: 218 HTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLE 277 Query: 342 ISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQL-VFRHSFAPILTAEIADELLSHL 400 I E P EEVL VA V + R L GA +L V++ + + + A LL Sbjct: 278 IEHGELP-----EEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 Query: 401 VNTGETKKMRIED-IQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPE 459 + K M D + +VAK +SR ++LSN R + R++ MY++K S Sbjct: 333 IKPNRVKAMDPIDELIEIVAKVTGVSREEILSNSRNVKALLARRIGMYVAKNYLGSSLRT 392 Query: 460 IGRRFGDRDHTTVLHAVRKVEK-MLETDITLKKEVELLKRLIS 501 I +F R H V+ +V+KV+ +L+ + LK ++ + IS Sbjct: 393 IAEKFN-RSHPVVVDSVKKVKDSLLKGNKQLKSLIDEVIGEIS 434 >gnl|CDD|172577 PRK14087, dnaA, chromosomal replication initiation protein; Provisional. Length = 450 Score = 175 bits (446), Expect = 2e-44 Identities = 106/343 (30%), Positives = 187/343 (54%), Gaps = 15/343 (4%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ GSSN A A Q++++ Y NPLFI+ G+GKTHLL+A N Sbjct: 114 FENFVIGSSNEQAFIAVQTVSKNPGISY-----NPLFIYGESGMGKTHLLKAAKNYIESN 168 Query: 224 QPNLRVVYLTAEYFMWRFASAIR--DNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-F 280 +L+V Y++ + F + ++ K+ + D+L+IDD+QFL K +E F Sbjct: 169 FSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYKEKTNEIF 228 Query: 281 CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRL 340 + N+ +++ KQ+ ++D+ P L D R+ +R G+S+ + D + +I+K + Sbjct: 229 FTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEI 288 Query: 341 AISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVF---RHSFAPILTAEIADELL 397 + ++ K + EE + ++ + R++ G+ ++L F ++ I+T EI +L Sbjct: 289 ---KNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLF 345 Query: 398 SHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSF 457 + T + + ++ I+ +V++ Y IS N + R +++V R +AMYL+K + + Sbjct: 346 RD-IPTSKLGILNVKKIKEVVSEKYGISVNAIDGKARSKSIVTARHIAMYLTKEILNHTL 404 Query: 458 PEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEVELLKRLI 500 +IG FG RDHTTV++A RK+EKML+ D LKK V++LK I Sbjct: 405 AQIGEEFGGRDHTTVINAERKIEKMLKKDKQLKKTVDILKNKI 447 >gnl|CDD|183521 PRK12422, PRK12422, chromosomal replication initiation protein; Provisional. Length = 445 Score = 166 bits (423), Expect = 1e-41 Identities = 101/355 (28%), Positives = 170/355 (47%), Gaps = 24/355 (6%) Query: 158 LDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIA 217 LD F+ F+ N + Q +V G NP+++ G GKTHL+QA Sbjct: 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQG-KGFPFNPIYLFGPEGSGKTHLMQAAV 162 Query: 218 NASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGK-LI 276 +A R+ +++Y+ +E F SAIR + RN+D L I+D++ GK Sbjct: 163 HAL--RESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGAT 220 Query: 277 QHEFCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPLG-LHDYEMRFSI 335 Q EF H NSL K +V ++ P +L++++ R+ SR + G+++PL L +R Sbjct: 221 QEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLR--- 277 Query: 336 LKNRLAISQKEDPKLNINEEVLMHVARTVTTSGRELDGAFNQLVFRHSFAP----ILTAE 391 + E + I E L + ++++ + L A L R ++ +L + Sbjct: 278 ---SFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSHQLLYVD 334 Query: 392 IADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKI 451 LL ++ E+ ++ I R VA++Y +S +L + R V PRQVAMYL + Sbjct: 335 DIKALLHDVLEAAESVRLTPSKIIRAVAQYYGVSPESILGRSQSREYVLPRQVAMYLCRQ 394 Query: 452 MTPRSFPEIGRRFGDRDHTTVLHAVRKVEKMLETDITLKKEV-----ELLKRLIS 501 S+ +IG F RDH+TV+ ++R + + LE D +++ E+ KRL S Sbjct: 395 KLSLSYVKIGDVFS-RDHSTVISSIRAISQKLEED---DRDISMAIQEITKRLSS 445 >gnl|CDD|149380 pfam08299, Bac_DnaA_C, domain. Length = 70 Score = 114 bits (287), Expect = 7e-26 Identities = 44/70 (62%), Positives = 54/70 (77%) Query: 410 RIEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 IE+IQ +VA++YNI+ DLLS R R+VVR RQ+AMYL + +T S PEIG FG RDH Sbjct: 1 TIENIQEIVAEYYNITVEDLLSKSRTRSVVRARQIAMYLLRELTNLSLPEIGEIFGGRDH 60 Query: 470 TTVLHAVRKV 479 TTVLHAVRK+ Sbjct: 61 TTVLHAVRKI 70 >gnl|CDD|128999 smart00760, Bac_DnaA_C, Bacterial dnaA protein helix-turn-helix domain. Could be involved in DNA-binding. Length = 60 Score = 97.6 bits (244), Expect = 7e-21 Identities = 28/59 (47%), Positives = 39/59 (66%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDH 469 IE+I VA+++ + DL S R R +V RQ+AMYL++ +T S PEIG+ FG RDH Sbjct: 2 IEEIIEAVAEYFGVKPEDLKSKSRKREIVLARQIAMYLARELTDLSLPEIGKIFGGRDH 60 >gnl|CDD|163254 TIGR03420, DnaA_homol_Hda, DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. Length = 226 Score = 80.3 bits (199), Expect = 1e-15 Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 22/180 (12%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F G N L A + +A L++ G GK+HLLQA A+ +R Sbjct: 14 FDNFYAGG-NAELLAALRQLAAGKGD-------RFLYLWGESGSGKSHLLQAACAAAEER 65 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQG-KLIQHEFCH 282 +YL A + + L DL+ +DD++ + G Q H Sbjct: 66 G--KSAIYLPL---------AELAQADPEVLEGLEQADLVCLDDVEAIAGQPEWQEALFH 114 Query: 283 LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQGGVSVPL-GLHDYEMRFSILKNRLA 341 L N + ++ +++ A P++L P +R+RL G+ L L D E + + L++R A Sbjct: 115 LYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEE-KIAALQSRAA 173 >gnl|CDD|180719 PRK06835, PRK06835, DNA replication protein DnaC; Validated. Length = 329 Score = 58.0 bits (141), Expect = 6e-09 Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 16/130 (12%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIR---DNCALNLKD 255 L + + G GKT L IA + R V+Y TA+ + IR D + D Sbjct: 186 LLFYGNTGTGKTFLSNCIAKELLDR--GKSVIYRTADELIEIL-REIRFNNDKELEEVYD 242 Query: 256 SLRNIDLLLIDDMQFLQGKLIQHEFCH-----LLNSLLDSAKQVVAAADRPPSELESL-D 309 L N DLL+IDD+ G EF L+N L K+++ + + EL Sbjct: 243 LLINCDLLIIDDL----GTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYS 298 Query: 310 PRIRSRLQGG 319 RI SRL G Sbjct: 299 ERISSRLLGN 308 >gnl|CDD|168147 PRK05642, PRK05642, DNA replication initiation factor; Validated. Length = 234 Score = 55.3 bits (133), Expect = 3e-08 Identities = 49/166 (29%), Positives = 79/166 (47%), Gaps = 23/166 (13%) Query: 157 PLDSRF----VFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHL 212 PL R F+ + G+ N AL + + E D+ G+T + +++ G+G++HL Sbjct: 7 PLGVRLRDDATFANYYPGA-NAAALGYVERLCEADA-GWTE---SLIYLWGKDGVGRSHL 61 Query: 213 LQAIANASIK-RQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFL 271 LQA A ++ Q VYL + R L D+L +L+ +DD+ + Sbjct: 62 LQA---ACLRFEQRGEPAVYLPLAELLDR---------GPELLDNLEQYELVCLDDLDVI 109 Query: 272 QGKLIQHE-FCHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 GK E HL N L DS ++++ AA + P EL P ++SRL Sbjct: 110 AGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRL 155 >gnl|CDD|180356 PRK06030, PRK06030, hypothetical protein; Provisional. Length = 124 Score = 53.2 bits (128), Expect = 1e-07 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%) Query: 414 IQRMVAKHYNISRNDLLSNRRVR-TVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTV 472 + ++A + +S ++ S R R V R RQ+AMY++ + E+ FG RD TTV Sbjct: 28 VIDLLALAFGVSGAEIASPLRGRREVSRIRQIAMYVAHVSLGWPMNEVALAFG-RDRTTV 86 Query: 473 LHAVRKVEKMLETDITLKKEVELLKRLI 500 HA VE + + D V +L+R++ Sbjct: 87 GHACHTVEDLRD-DAAFDARVSVLERIV 113 >gnl|CDD|181233 PRK08116, PRK08116, hypothetical protein; Validated. Length = 268 Score = 42.3 bits (100), Expect = 3e-04 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 5/73 (6%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALN---LKD 255 L + SVG GKT+L IAN I++ + V+++ + R S + + + + Sbjct: 117 LLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQLLNRIKSTYKSSGKEDENEIIR 174 Query: 256 SLRNIDLLLIDDM 268 SL N DLL++DD+ Sbjct: 175 SLVNADLLILDDL 187 >gnl|CDD|181224 PRK08084, PRK08084, DNA replication initiation factor; Provisional. Length = 235 Score = 41.6 bits (98), Expect = 4e-04 Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 21/158 (13%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F++F G N L A Q+ + GY +++ + G G++HLL A A A + + Sbjct: 21 FASFYPGD-NDSLLAALQNALRQEHSGY-------IYLWSREGAGRSHLLHA-ACAELSQ 71 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHE-FCH 282 + V Y+ + R + + + + L+ ID+++ + G + Sbjct: 72 R-GRAVGYVPLD---------KRAWFVPEVLEGMEQLSLVCIDNIECIAGDELWEMAIFD 121 Query: 283 LLNSLLDSAK-QVVAAADRPPSELESLDPRIRSRLQGG 319 L N +L+S + +++ DRPP +L P + SRL G Sbjct: 122 LYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG 159 >gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 Score = 40.8 bits (95), Expect = 7e-04 Identities = 26/145 (17%), Positives = 44/145 (30%), Gaps = 24/145 (16%) Query: 195 RLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLK 254 + I G GKT L +A+A P V+Y+ E + + K Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLLLIIVGGKK 58 Query: 255 DSL---------------RNIDLLLIDDMQFLQGK------LIQHEFCHLLNSLLDSAKQ 293 S D+L++D++ L L+ E LL + Sbjct: 59 ASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLT 118 Query: 294 VVAAADRPPSELES-LDPRIRSRLQ 317 V+ + + L R R+ Sbjct: 119 VILTTNDEKDLGPALLRRRFDRRIV 143 >gnl|CDD|168719 PRK06893, PRK06893, DNA replication initiation factor; Validated. Length = 229 Score = 40.2 bits (94), Expect = 0.001 Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 19/143 (13%) Query: 200 FIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRN 259 +I GK+HLL+A++N + Q + L+ + F+ A+ +N L Sbjct: 43 YIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQY---FSPAVLEN--------LEQ 91 Query: 260 IDLLLIDDMQFLQGKLIQHEF----CHLLNSLLDSAKQ-VVAAADRPPSELESLDPRIRS 314 DL+ +DD+Q + G E+ L N + + K ++ +AD P L P + S Sbjct: 92 QDLVCLDDLQAVIG---NEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLAS 148 Query: 315 RLQGGVSVPLGLHDYEMRFSILK 337 RL G L E + +L+ Sbjct: 149 RLTWGEIYQLNDLTDEQKIIVLQ 171 >gnl|CDD|181578 PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated. Length = 227 Score = 39.2 bits (92), Expect = 0.003 Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 25/154 (16%) Query: 164 FSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKR 223 F F+ G N + + +A R ++ G G++HLLQA+ + Sbjct: 17 FDNFVAGE-NAELVARLRELAAGPVAD----RF--FYLWGEAGSGRSHLLQALVADASYG 69 Query: 224 QPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHL 283 N R YL A L D +L +DD++ L Q +L Sbjct: 70 GRNAR--YLDA-------------ASPLLAFDFDPEAELYAVDDVERL-DDAQQIALFNL 113 Query: 284 LNSLLDSAK-QVVAAADRPPSELESLDPRIRSRL 316 N + + ++ A P L L +R+RL Sbjct: 114 FNRVRAHGQGALLVAGPAAPLAL-PLREDLRTRL 146 >gnl|CDD|181681 PRK09183, PRK09183, transposase/IS protein; Provisional. Length = 259 Score = 37.8 bits (88), Expect = 0.006 Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 9/70 (12%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNI----D 261 G+GKTHL AIA + ++V + TA + + ++A R K +L+ Sbjct: 112 GVGKTHL--AIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQG---RYKTTLQRGVMAPR 166 Query: 262 LLLIDDMQFL 271 LL+ID++ +L Sbjct: 167 LLIIDEIGYL 176 >gnl|CDD|181587 PRK08939, PRK08939, primosomal protein DnaI; Reviewed. Length = 306 Score = 37.2 bits (87), Expect = 0.011 Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLR 258 L+++ G+GK++LL AIAN K+ + +++ F+ ++I D D+++ Sbjct: 159 LYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPE--FIRELKNSISDGSVKEKIDAVK 216 Query: 259 NIDLLLIDDM 268 +L++DD+ Sbjct: 217 EAPVLMLDDI 226 >gnl|CDD|180750 PRK06921, PRK06921, hypothetical protein; Provisional. Length = 266 Score = 34.0 bits (78), Expect = 0.085 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 15/120 (12%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR--FASAIRDNCALNLK-DSLRNIDL 262 G GKTHLL A AN ++++ + YF + F D L K + ++ +++ Sbjct: 127 GSGKTHLLTAAANELMRKK------GVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEV 180 Query: 263 LLIDDM-QFLQGKLIQHEF-----CHLLNSLLDSAKQVVAAADRPPSELESLDPRIRSRL 316 L IDD+ + + GK E+ +LN + K ++ +++ EL +D + SR+ Sbjct: 181 LFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELTIDELLDIDEALGSRI 240 >gnl|CDD|183482 PRK12377, PRK12377, putative replication protein; Provisional. Length = 248 Score = 32.9 bits (75), Expect = 0.21 Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 14/127 (11%) Query: 144 ILGKQTISPVFGSPLDSRFVFSTF-IEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIH 202 IL + I P L + F+ + ++ R AL+ A+SIA+ G T N +F Sbjct: 58 ILNRSGIQP-----LHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCT----NFVF-S 107 Query: 203 ASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAIRD-NCALNLKDSLRNID 261 G GK HL AI N + + ++ VV T M R + + L +D Sbjct: 108 GKPGTGKNHLAAAIGNRLLAKGRSVIVV--TVPDVMSRLHESYDNGQSGEKFLQELCKVD 165 Query: 262 LLLIDDM 268 LL++D++ Sbjct: 166 LLVLDEI 172 >gnl|CDD|184406 PRK13933, PRK13933, stationary phase survival protein SurE; Provisional. Length = 253 Score = 32.0 bits (73), Expect = 0.32 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 9/50 (18%) Query: 85 IKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVEKTASSPSITKLSPI 134 I + T+ +L + H I + P +++ASS SIT PI Sbjct: 11 INAEGINTLAELLSKYHEVI---------IVAPENQRSASSHSITIYEPI 51 >gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional. Length = 303 Score = 31.9 bits (72), Expect = 0.39 Identities = 14/42 (33%), Positives = 21/42 (50%) Query: 175 VALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 +A+ A A+VD G V+ P+ +H S GL + AI Sbjct: 208 LAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAI 249 >gnl|CDD|181180 PRK07952, PRK07952, DNA replication protein DnaC; Validated. Length = 244 Score = 30.5 bits (69), Expect = 1.2 Identities = 29/118 (24%), Positives = 52/118 (44%), Gaps = 17/118 (14%) Query: 206 GLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWRFASAI--RDNCALNLKDSLRNIDLL 263 G GK HL AI N + R + V+ +T M + L + L N+DLL Sbjct: 109 GTGKNHLAAAICNELLLRGKS--VLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLL 166 Query: 264 LIDDMQFLQGKLIQHEFCH---LLNSLLDSAKQVVAAADRPPSELESLDPRIRSRLQG 318 +ID++ +Q E + ++N ++D +++ RP L + + ++L G Sbjct: 167 VIDEIG------VQTESRYEKVIINQIVDRR----SSSKRPTGMLTNSNMEEMTKLLG 214 >gnl|CDD|183114 PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional. Length = 638 Score = 30.4 bits (69), Expect = 1.2 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 18/65 (27%) Query: 161 RFVFSTFIEGSSN-----RVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQA 215 F + S AA+S P+ + G+GK L QA Sbjct: 321 SHTFDHMPQDSPQMRRLIHFGRQAAKSSF-------------PVLLCGEEGVGKALLAQA 367 Query: 216 IANAS 220 I N S Sbjct: 368 IHNES 372 >gnl|CDD|162842 TIGR02402, trehalose_TreZ, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. Length = 542 Score = 29.2 bits (66), Expect = 2.6 Identities = 11/35 (31%), Positives = 17/35 (48%) Query: 201 IHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAE 235 +HA H+L+ +A + LR V+L AE Sbjct: 246 VHAIADTSAKHILEELAREVHELAAELRPVHLIAE 280 >gnl|CDD|128763 smart00487, DEXDc, DEAD-like helicases superfamily. Length = 201 Score = 29.4 bits (66), Expect = 2.6 Identities = 11/35 (31%), Positives = 16/35 (45%) Query: 199 LFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLT 233 + + A G GKT A ++KR RV+ L Sbjct: 27 VILAAPTGSGKTLAALLPALEALKRGKGKRVLVLV 61 >gnl|CDD|181541 PRK08727, PRK08727, hypothetical protein; Validated. Length = 233 Score = 29.0 bits (65), Expect = 2.6 Identities = 47/190 (24%), Positives = 77/190 (40%), Gaps = 35/190 (18%) Query: 157 PLDSRFVFSTFIEGSSNRVALTAAQSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAI 216 P D RF ++I L Q++A S + L++ G GKTHL A+ Sbjct: 13 PSDQRF--DSYIAAPDG--LLAQLQALAAGQSSDW-------LYLSGPAGTGKTHL--AL 59 Query: 217 ANASIKRQPNLRVVYLTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 A + Q YL + A+A R AL ++L L+ +D ++ + G+ Sbjct: 60 ALCAAAEQAGRSSAYLPLQ------AAAGRLRDAL---EALEGRSLVALDGLESIAGQ-- 108 Query: 277 QHEFCHLLNSLLDSAKQVVAA-------ADRPPSELESLDPRIRSRLQGGVSVPLGLHDY 329 +L D + AA A + P L + P +RSRL + + L + D Sbjct: 109 ----REDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDD 164 Query: 330 EMRFSILKNR 339 R ++L+ R Sbjct: 165 VARAAVLRER 174 >gnl|CDD|183675 PRK12678, PRK12678, transcription termination factor Rho; Provisional. Length = 672 Score = 28.7 bits (65), Expect = 3.7 Identities = 9/12 (75%), Positives = 10/12 (83%) Query: 208 GKTHLLQAIANA 219 GKT +LQ IANA Sbjct: 428 GKTTILQNIANA 439 >gnl|CDD|180846 PRK07111, PRK07111, anaerobic ribonucleoside triphosphate reductase; Provisional. Length = 735 Score = 28.4 bits (64), Expect = 4.5 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 20/65 (30%) Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQRMV------------AKHYNISRNDLLSNRRV 435 E+ +++ +L + +++ +EDIQ +V AK Y + R + Sbjct: 39 EAIELTQKVIKYLEEKYK-EEVTVEDIQDLVEKVLIENGHAETAKAYILYRAE------- 90 Query: 436 RTVVR 440 RT +R Sbjct: 91 RTRIR 95 >gnl|CDD|164956 PHA02561, D, tail protein; Provisional. Length = 351 Score = 28.1 bits (63), Expect = 4.9 Identities = 7/36 (19%), Positives = 15/36 (41%) Query: 371 LDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGET 406 L + R++ P + +A + H+ T E+ Sbjct: 127 LGDIVRAIAGRNNLTPRVAPALAGIPIDHIDQTQES 162 >gnl|CDD|171440 PRK12365, PRK12365, ribonucleotide-diphosphate reductase subunit alpha; Provisional. Length = 1046 Score = 28.0 bits (62), Expect = 5.9 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 10/59 (16%) Query: 388 LTAEIADELLSHLVNTGETKKMRIEDIQR------MVAKHYNISRNDLLSNRRVRTVVR 440 LT I +E+L + ++ IE IQ MV HY++++N +L R R VR Sbjct: 164 LTQNIVEEILE---CCSQEDRIDIEKIQDIVEQQLMVVGHYDVAKNYILY-REARARVR 218 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.321 0.134 0.378 Gapped Lambda K H 0.267 0.0793 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,995,837 Number of extensions: 516705 Number of successful extensions: 1189 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1143 Number of HSP's successfully gapped: 48 Length of query: 502 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 405 Effective length of database: 3,898,497 Effective search space: 1578891285 Effective search space used: 1578891285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (26.4 bits)