BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] (502 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 502 Score = 1032 bits (2668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/502 (100%), Positives = 502/502 (100%) Query: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ Sbjct: 1 MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60 Query: 61 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE Sbjct: 61 RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120 Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA Sbjct: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180 Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR Sbjct: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240 Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR Sbjct: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300 Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV Sbjct: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360 Query: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK Sbjct: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420 Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE Sbjct: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480 Query: 481 KMLETDITLKKEVELLKRLISE 502 KMLETDITLKKEVELLKRLISE Sbjct: 481 KMLETDITLKKEVELLKRLISE 502 >gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str. psy62] Length = 262 Score = 28.1 bits (61), Expect = 0.31, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%) Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND-LLSNRRVRTVVRPRQVAMYL 448 A + D L VN G TK ++ ++ M KH S ND L+ ++ + P Q A +L Sbjct: 136 AGLKDNQLLLKVNRGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQRARFL 195 Query: 449 SKIMTPRSF 457 +K++ R Sbjct: 196 NKLLLKRGL 204 >gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str. psy62] Length = 781 Score = 25.4 bits (54), Expect = 2.1, Method: Compositional matrix adjust. Identities = 12/37 (32%), Positives = 21/37 (56%) Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447 I+ I+R + H S N+ L + +++ +VR R A Y Sbjct: 108 IDLIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAY 144 >gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter asiaticus str. psy62] Length = 1246 Score = 25.0 bits (53), Expect = 2.9, Method: Compositional matrix adjust. Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 4/57 (7%) Query: 2 QLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASW 58 +++E+ + I+ + A++ PN + +++ L+ E + +SSRLK + Y W Sbjct: 925 EIKELKSVIEAD----AKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLW 977 >gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 418 Score = 25.0 bits (53), Expect = 3.0, Method: Compositional matrix adjust. Identities = 14/45 (31%), Positives = 22/45 (48%) Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276 +T+ Y W++ I D ++ L + + ID M LQGK I Sbjct: 251 MTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEI 295 >537021.9.peg.410_1 Length = 952 Score = 23.9 bits (50), Expect = 6.2, Method: Compositional matrix adjust. Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%) Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNI-DLLLIDDMQFLQGKLIQHEFCHLL 284 A+Y + A + NC L+ +D + N DLL D+ I E H+L Sbjct: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.134 0.378 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 296,563 Number of Sequences: 1233 Number of extensions: 11632 Number of successful extensions: 38 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 33 Number of HSP's gapped (non-prelim): 6 length of query: 502 length of database: 328,796 effective HSP length: 78 effective length of query: 424 effective length of database: 232,622 effective search space: 98631728 effective search space used: 98631728 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 40 (20.0 bits)