BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780627|ref|YP_003065040.1| chromosomal replication
initiation protein [Candidatus Liberibacter asiaticus str. psy62]
         (502 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780627|ref|YP_003065040.1| chromosomal replication initiation protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 502

 Score = 1032 bits (2668), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/502 (100%), Positives = 502/502 (100%)

Query: 1   MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60
           MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ
Sbjct: 1   MQLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASWFQ 60

Query: 61  RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120
           RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE
Sbjct: 61  RLKFHSVLHNIVHLSVPTNFLKAWIKNRYLETITKLFQEEHSRIQGVEILVRSVALPSVE 120

Query: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180
           KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA
Sbjct: 121 KTASSPSITKLSPINTNISKSPIILGKQTISPVFGSPLDSRFVFSTFIEGSSNRVALTAA 180

Query: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240
           QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR
Sbjct: 181 QSIAEVDSHGYTTVRLNPLFIHASVGLGKTHLLQAIANASIKRQPNLRVVYLTAEYFMWR 240

Query: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300
           FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR
Sbjct: 241 FASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLIQHEFCHLLNSLLDSAKQVVAAADR 300

Query: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360
           PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV
Sbjct: 301 PPSELESLDPRIRSRLQGGVSVPLGLHDYEMRFSILKNRLAISQKEDPKLNINEEVLMHV 360

Query: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420
           ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK
Sbjct: 361 ARTVTTSGRELDGAFNQLVFRHSFAPILTAEIADELLSHLVNTGETKKMRIEDIQRMVAK 420

Query: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480
           HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE
Sbjct: 421 HYNISRNDLLSNRRVRTVVRPRQVAMYLSKIMTPRSFPEIGRRFGDRDHTTVLHAVRKVE 480

Query: 481 KMLETDITLKKEVELLKRLISE 502
           KMLETDITLKKEVELLKRLISE
Sbjct: 481 KMLETDITLKKEVELLKRLISE 502


>gi|254780125|ref|YP_003064538.1| prophage antirepressor [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 262

 Score = 28.1 bits (61), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 390 AEIADELLSHLVNTGETKKMRIEDIQRMVAKHYNISRND-LLSNRRVRTVVRPRQVAMYL 448
           A + D  L   VN G TK   ++ ++ M  KH   S ND  L+  ++   + P Q A +L
Sbjct: 136 AGLKDNQLLLKVNRGVTKITGVDQLEAMDIKHLPSSDNDEYLTITQIGERLNPPQRARFL 195

Query: 449 SKIMTPRSF 457
           +K++  R  
Sbjct: 196 NKLLLKRGL 204


>gi|254780772|ref|YP_003065185.1| surface antigen (D15) [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 781

 Score = 25.4 bits (54), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 12/37 (32%), Positives = 21/37 (56%)

Query: 411 IEDIQRMVAKHYNISRNDLLSNRRVRTVVRPRQVAMY 447
           I+ I+R +  H   S N+ L + +++ +VR R  A Y
Sbjct: 108 IDLIERKIINHLFFSGNNNLKDDQLKMIVRSRSAAAY 144


>gi|254781206|ref|YP_003065619.1| hypothetical protein CLIBASIA_05565 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1246

 Score = 25.0 bits (53), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 2   QLREVAACIQENDVEIAEKTPNVDVDKRCLEVNCESIFTIVSSRLKNQVGPDVYASW 58
           +++E+ + I+ +    A++ PN + +++ L+   E +   +SSRLK     + Y  W
Sbjct: 925 EIKELKSVIEAD----AKENPNPNKNQKKLQKTREKLVAQLSSRLKELNIDNAYGLW 977


>gi|254780949|ref|YP_003065362.1| tyrosyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 418

 Score = 25.0 bits (53), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 232 LTAEYFMWRFASAIRDNCALNLKDSLRNIDLLLIDDMQFLQGKLI 276
           +T+ Y  W++   I D   ++    L  + +  ID M  LQGK I
Sbjct: 251 MTSPYNFWQYWRNIDDADVVSFAKRLTTLPMSEIDRMAKLQGKEI 295


>537021.9.peg.410_1 
          Length = 952

 Score = 23.9 bits (50), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 234 AEYFMWRFASAIRDNCALNLKDSLRNI-DLLLIDDMQFLQGKLIQHEFCHLL 284
           A+Y    +  A + NC L+ +D + N  DLL   D+       I  E  H+L
Sbjct: 130 AKYLNAHYEEAKKKNCVLDFEDLIINTNDLLKKRDVSAWIRYKIDQEINHIL 181


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.321    0.134    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 296,563
Number of Sequences: 1233
Number of extensions: 11632
Number of successful extensions: 38
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 6
length of query: 502
length of database: 328,796
effective HSP length: 78
effective length of query: 424
effective length of database: 232,622
effective search space: 98631728
effective search space used: 98631728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 40 (20.0 bits)