HHsearch alignment for GI: 254780628 and conserved domain: COG0320
>COG0320 LipA Lipoate synthase [Coenzyme metabolism].
Probab=98.21 E-value=6.9e-06 Score=59.16 Aligned_cols=211 Identities=16% Similarity=0.179 Sum_probs=127.2
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCC--HHHHHHHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCCCHHHHHH
Q ss_conf 49999406511837657730245788662--889999999999999876189505899-----96288888789999999
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVG--QENFIQSFLTEMQWMRQLTGPRSISSI-----FFGGGTPSLIEPQNIAL 91 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~--~~~y~~~l~~Ei~~~~~~~~~~~~~~i-----y~GGGTPs~l~~~~l~~ 91 (395)
T Consensus 71 ATFmImG~~CTR~C~FC~V~~g~P~~lD~~EP~rvAea-V~~mg-----LkyVViTsVdRDDL~DGG-------A~hfa~ 137 (306)
T COG0320 71 ATFMILGDICTRRCRFCDVKTGRPNPLDPDEPERVAEA-VKDMG-----LKYVVITSVDRDDLPDGG-------AQHFAE 137 (306)
T ss_pred EEEEECCCHHCCCCCCCCCCCCCCCCCCCCHHHHHHHH-HHHHC-----CCEEEEEEECCCCCCCCC-------HHHHHH
T ss_conf 37764151322678853147899999997427899999-99838-----986999753156665645-------689999
Q ss_pred HHHHHHHCCCCCCCCCCCCCC-CCCCC-HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 997664047644433211332-10410-0234776630345411432343320134554224431347899998630244
Q gi|254780628|r 92 ILDGIAKNWTVSSNVEITIEA-NPSSV-EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFP 169 (395)
Q Consensus 92 ll~~i~~~~~~~~~~e~t~E~-~P~~~-~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~ 169 (395)
T Consensus 138 ~i~~Ir~~~P-----~t~iEvL~PDF~G~~~al~~v~~~~pdV~nHNvETVp-rL~~~VRp~A~Y~~SL~~L~~~k~~~P 211 (306)
T COG0320 138 CIRAIRELNP-----QTTIEVLTPDFRGNDDALEIVADAGPDVFNHNVETVP-RLYPRVRPGATYERSLSLLERAKELGP 211 (306)
T ss_pred HHHHHHHHCC-----CCEEEEECCCCCCCHHHHHHHHHCCCCHHHCCCCCCH-HCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999996399-----9648983865467899999998369611004520000-114256898768889999999998589
Q ss_pred CCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 433--321000258543221112788753180012346468825960001454498021103567889998655788709
Q gi|254780628|r 170 RMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHG 247 (395)
Q Consensus 170 ~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~G 247 (395)
T Consensus 212 ~i~TKSgiMlGL-GEt~~Ev~e~m~DLr~~gvdilTiGQYlq-P-S~--~HlpV~ryv~Pe------eF~~~~~~a~~~G 280 (306)
T COG0320 212 DIPTKSGLMVGL-GETDEEVIEVMDDLRSAGVDILTIGQYLQ-P-SR--KHLPVQRYVTPE------EFDELEEVAEEMG 280 (306)
T ss_pred CCCCCCCEEEEC-CCCHHHHHHHHHHHHHCCCCEEEECCCCC-C-CC--CCCCCEECCCHH------HHHHHHHHHHHCC
T ss_conf 863112135505-77689999999999985998997300147-7-62--458833211889------9999999999746
Q ss_pred CCCCCCCCHHHH
Q ss_conf 624236743431
Q gi|254780628|r 248 LHAYEISNHSFL 259 (395)
Q Consensus 248 Y~~Yeis~fak~ 259 (395)
T Consensus 281 F~~v~sgPlvRS 292 (306)
T COG0320 281 FLHVASGPLVRS 292 (306)
T ss_pred CHHHCCCCCCCC
T ss_conf 065405763002