HHsearch alignment for GI: 254780628 and conserved domain: PRK06245

>PRK06245 cofG FO synthase subunit 1; Reviewed.
Probab=98.97  E-value=7e-09  Score=78.99  Aligned_cols=213  Identities=14%  Similarity=0.205  Sum_probs=126.2

Q ss_pred             CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             5499994065---1183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r   18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~   94 (395)
T Consensus         9 Ty~~n~~In~TNiC~~~C~fCaF~~~~~~a~~-ls--~eev~~~~~ea~-~~G~--tEvl~~gG~~P~~-~~~~~~~l~~   81 (336)
T PRK06245          9 TYSRNVFIPLTYECRNRCGYCTFRPDPGEASL-LS--PEEVREILERGQ-DAGC--TEALFTFGEVPDE-SEEIREQLAE   81 (336)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC--HHHHHHHHHHHH-HCCC--EEEEEECCCCCCC-CHHHHHHHHH
T ss_conf             98186261677540268825867468875687-79--999999999999-7698--3999805788663-6899999997


Q ss_pred             HHHHCC-C-CCCCCCCCCC------CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC---CCCHHHHHHHHH
Q ss_conf             664047-6-4443321133------2104100234776630345411432343320134554224---431347899998
Q gi|254780628|r   95 GIAKNW-T-VSSNVEITIE------ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN---HNASEAIAAIHL  163 (395)
Q Consensus        95 ~i~~~~-~-~~~~~e~t~E------~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~---~~~~~~~~~~~~  163 (395)
T Consensus        82 ~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~v~as-mG~mlE~~se~l~~~~h~~~P~K~~~~rL~~ie~  160 (336)
T PRK06245         82 PGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKPVNAS-MGLMLEQTSPRLLETVHRHSPGKDPELRLETIEW  160 (336)
T ss_pred             HCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf             075507788999858887636552236676789999987535976-6757123568988763044898788999999999


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEE---EEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf             6302444333210002585432211127887531800--1234---6468825960001454498021103567889998
Q gi|254780628|r  164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSL---YQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL  238 (395)
Q Consensus       164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~---Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~  238 (395)
T Consensus       161 Ah~lgIptTatmL~G-~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~------~~~~~~e~l~~iAv  233 (336)
T PRK06245        161 AGELKIPFTTGLLIG-IGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENH------PEPSPEEMPRVVAL  233 (336)
T ss_pred             HHHCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCHHHHHHHHHH
T ss_conf             998399722024520-66999999999999999886349757995068778987533469------99799999999999


Q ss_pred             HHHHHHH
Q ss_conf             6557887
Q gi|254780628|r  239 TQSITSA  245 (395)
Q Consensus       239 a~e~L~~  245 (395)
T Consensus       234 ARiiL~~  240 (336)
T PRK06245        234 ARLILPP  240 (336)
T ss_pred             HHHHCCC
T ss_conf             9996699