HHsearch alignment for GI: 254780628 and conserved domain: PRK06245
>PRK06245 cofG FO synthase subunit 1; Reviewed.
Probab=98.97 E-value=7e-09 Score=78.99 Aligned_cols=213 Identities=14% Similarity=0.205 Sum_probs=126.2
Q ss_pred CEEEEEECCC---CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 5499994065---1183765773024578866288999999999999987618950589996288888789999999997
Q gi|254780628|r 18 SLGVYVHWPF---CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 18 ~l~lYihiPF---C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
T Consensus 9 Ty~~n~~In~TNiC~~~C~fCaF~~~~~~a~~-ls--~eev~~~~~ea~-~~G~--tEvl~~gG~~P~~-~~~~~~~l~~ 81 (336)
T PRK06245 9 TYSRNVFIPLTYECRNRCGYCTFRPDPGEASL-LS--PEEVREILERGQ-DAGC--TEALFTFGEVPDE-SEEIREQLAE 81 (336)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC--HHHHHHHHHHHH-HCCC--EEEEEECCCCCCC-CHHHHHHHHH
T ss_conf 98186261677540268825867468875687-79--999999999999-7698--3999805788663-6899999997
Q ss_pred HHHHCC-C-CCCCCCCCCC------CCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCC---CCCHHHHHHHHH
Q ss_conf 664047-6-4443321133------2104100234776630345411432343320134554224---431347899998
Q gi|254780628|r 95 GIAKNW-T-VSSNVEITIE------ANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRN---HNASEAIAAIHL 163 (395)
Q Consensus 95 ~i~~~~-~-~~~~~e~t~E------~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~---~~~~~~~~~~~~ 163 (395)
T Consensus 82 ~~~~~~~~~~~~~~~~~le~gllph~n~G~ls~~el~~Lk~v~as-mG~mlE~~se~l~~~~h~~~P~K~~~~rL~~ie~ 160 (336)
T PRK06245 82 PGYSSWLEYLYDLCELALETGLLPHTNAGILSRAEMEALKPVNAS-MGLMLEQTSPRLLETVHRHSPGKDPELRLETIEW 160 (336)
T ss_pred HCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
T ss_conf 075507788999858887636552236676789999987535976-6757123568988763044898788999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCC--CEEE---EEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 6302444333210002585432211127887531800--1234---6468825960001454498021103567889998
Q gi|254780628|r 164 ARNIFPRMSFDLIYALPKQTMTQWEMELQRALSYAVD--HLSL---YQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL 238 (395)
Q Consensus 164 ~~~~~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~--~is~---Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~ 238 (395)
T Consensus 161 Ah~lgIptTatmL~G-~gET~eeRi~hL~~IR~lq~~tGgfqefI~~~F~p~~~t~m~~~------~~~~~~e~l~~iAv 233 (336)
T PRK06245 161 AGELKIPFTTGLLIG-IGETWEDRIESLEAIAELHERYGHIQEVIIQNFRPKPGIPMENH------PEPSPEEMPRVVAL 233 (336)
T ss_pred HHHCCCCCEEEEEEE-CCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCC------CCCCHHHHHHHHHH
T ss_conf 998399722024520-66999999999999999886349757995068778987533469------99799999999999
Q ss_pred HHHHHHH
Q ss_conf 6557887
Q gi|254780628|r 239 TQSITSA 245 (395)
Q Consensus 239 a~e~L~~ 245 (395)
T Consensus 234 ARiiL~~ 240 (336)
T PRK06245 234 ARLILPP 240 (336)
T ss_pred HHHHCCC
T ss_conf 9996699