HHsearch alignment for GI: 254780628 and conserved domain: PRK13762
>PRK13762 tRNA-modifying enzyme; Provisional.
Probab=91.53 E-value=1.2 Score=24.45 Aligned_cols=203 Identities=10% Similarity=0.192 Sum_probs=106.9
Q ss_pred CCCCCCCCCCCCCE--EEECC----CCCCHHHHHHHHHHH-HHHHHHHHCCCEEE-------------EEEECCCCCCCC
Q ss_conf 06511837657730--24578----866288999999999-99998761895058-------------999628888878
Q gi|254780628|r 25 WPFCVKKCPYCDFN--SHVRR----YKVGQENFIQSFLTE-MQWMRQLTGPRSIS-------------SIFFGGGTPSLI 84 (395)
Q Consensus 25 iPFC~~~C~yC~f~--~~~~~----~~~~~~~y~~~l~~E-i~~~~~~~~~~~~~-------------~iy~GGGTPs~l 84 (395)
T Consensus 65 l~~C~~~CvfCWR~~~~~~~~~~~~~~DdPe~Ive~~i~~h~~li~g~kG~p~v~~er~~EA~~p~H~AiSL-~GEPtlY 143 (321)
T PRK13762 65 LAWCNQRCLFCWRPLEEDVGLLKPPEWDDPEEIVEESIKEQRKLLSGYKGNPKVDKEKFEEALEPKHVAISL-SGEPTLY 143 (321)
T ss_pred HHHHHCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCHHEEHHH-CCCCCCC
T ss_conf 777744485656899888766677888898999999999999997305899998989998727910010220-4886320
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCC---HHHHHHH
Q ss_conf 9999999997664047644433211332104100234776630345411432343320134554224431---3478999
Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNA---SEAIAAI 161 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~---~~~~~~~ 161 (395)
T Consensus 144 --P~l~eLi~~~h~r-~~stF-LVT-----Ng~~P~~l~~l~~~-PTQLYvSldAp~~e~~k~i~rPl~~d~Wer~~~sL 213 (321)
T PRK13762 144 --PRLPELIEEFHKR-GFTTF-LVT-----NGTRPDVLEKLEAE-PTQLYVSLDAPDKETYNRINRPVIPDAWERILETL 213 (321)
T ss_pred --HHHHHHHHHHHHC-CCCEE-EEE-----CCCCHHHHHHCCCC-CCEEEEEEECCCHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf --2189999999857-98379-982-----89898999856676-54279980069999999861655331899999999
Q ss_pred HHHHCCC-CC-CCCCCCCCCCCCCCCCCCCCHHHHHH-CCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHH
Q ss_conf 9863024-44-33321000258543221112788753-180012346468825960001454498021103567889998
Q gi|254780628|r 162 HLARNIF-PR-MSFDLIYALPKQTMTQWEMELQRALS-YAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNL 238 (395)
Q Consensus 162 ~~~~~~~-~~-v~iDli~GlPgqt~e~~~~~l~~~~~-l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~ 238 (395)
T Consensus 214 ~~L~~~~~RTV~R~TLVkg~Nm~~~~----~yA~Li~~~~P~FIEvK~ym~~G~Sr--~r--Lt~~nmP~heEV~---~F 282 (321)
T PRK13762 214 ELLPSKKTRTVIRITLVKGLNMTDPE----GYAKLIERANPDFVEVKAYMHVGYSR--NR--LTRDNMPSHEEVR---EF 282 (321)
T ss_pred HHHHCCCCCEEEEEEEECCCCCCCHH----HHHHHHHHCCCCEEEEEEEEEECCCC--CC--CCHHHCCCHHHHH---HH
T ss_conf 97543798759999876565767989----99999985499879871179842677--76--7722399889999---99
Q ss_pred HHHHHHHCCCC
Q ss_conf 65578870962
Q gi|254780628|r 239 TQSITSAHGLH 249 (395)
Q Consensus 239 a~e~L~~~GY~ 249 (395)
T Consensus 283 a~~l~~~~~Y~ 293 (321)
T PRK13762 283 AKELAEHLGYK 293 (321)
T ss_pred HHHHHHHCCCE
T ss_conf 99999863986