HHsearch alignment for GI: 254780628 and conserved domain: TIGR00048
>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=94.92 E-value=0.35 Score=28.02 Aligned_cols=198 Identities=17% Similarity=0.303 Sum_probs=118.7
Q ss_pred CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH------HHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 1183765773024578866288999999999999987------6189505899-96288888789999999997664047
Q gi|254780628|r 28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ------LTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNW 100 (395)
Q Consensus 28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~------~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~ 100 (395)
T Consensus 131 C~~~C~FC~----T~~gGf~RNL~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGEP-L~Nl~~vv~a~ei~n~~~ 205 (378)
T TIGR00048 131 CALGCTFCA----TAKGGFNRNLEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGEP-LLNLNEVVKALEILNDDV 205 (378)
T ss_pred CCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf 422551033----457875214510338999999999834557776654047887467871-011799999999874222
Q ss_pred C--CCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHH-HHHCCCC---
Q ss_conf 6--44433211332104100234776630--34541143234332013455---422443134789999-8630244---
Q gi|254780628|r 101 T--VSSNVEITIEANPSSVEVNNFQGYRK--AGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIH-LARNIFP--- 169 (395)
Q Consensus 101 ~--~~~~~e~t~E~~P~~~~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~-~~~~~~~--- 169 (395)
T Consensus 206 g~~is~-r~~T~STs---Gv~~ki~~Lad~~l~V~-lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~vr~Y~~~~~~n~G 280 (378)
T TIGR00048 206 GLGISK-RRITISTS---GVVPKIDELADKMLQVA-LAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLEKTGRNQG 280 (378)
T ss_pred HCCCCC-CEEEEEEC---CHHHHHHHHCCCCCCEE-EEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 036567-33788735---71458888513211033-44553288711244406500147867999999875864276777
Q ss_pred CCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 43332-10002585432211127887531800123464688259600014544980211035678899986557887096
Q gi|254780628|r 170 RMSFD-LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL 248 (395)
Q Consensus 170 ~v~iD-li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY 248 (395)
T Consensus 281 RV~fEY~Ll~~vND~~~HA-~~La~lL~g~~ckvNLIP~NP~~e~~Y~R---------~s~-~~i~~F---~~~L~s~g~ 346 (378)
T TIGR00048 281 RVTFEYVLLDGVNDQVEHA-EELAELLKGVKCKVNLIPFNPFPEADYER---------PSN-EQIDRF---AKVLKSKGL 346 (378)
T ss_pred CEEEEEEECCCCCCCHHHH-HHHHHHHCCCCCEEEEEECCCCCCCCCCC---------CCH-HHHHHH---HHHHHHCCC
T ss_conf 2688742002468858899-99999856998504012137879888888---------808-899999---998620883
Q ss_pred C
Q ss_conf 2
Q gi|254780628|r 249 H 249 (395)
Q Consensus 249 ~ 249 (395)
T Consensus 347 ~ 347 (378)
T TIGR00048 347 T 347 (378)
T ss_pred E
T ss_conf 7