HHsearch alignment for GI: 254780628 and conserved domain: TIGR00048

>TIGR00048 TIGR00048 radical SAM enzyme, Cfr family; InterPro: IPR004383 This family of conserved hypothetical proteins groups bacterial proteins of unknown function..
Probab=94.92  E-value=0.35  Score=28.02  Aligned_cols=198  Identities=17%  Similarity=0.303  Sum_probs=118.7

Q ss_pred             CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHH------HHCCCEEEEE-EECCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf             1183765773024578866288999999999999987------6189505899-96288888789999999997664047
Q gi|254780628|r   28 CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ------LTGPRSISSI-FFGGGTPSLIEPQNIALILDGIAKNW  100 (395)
Q Consensus        28 C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~------~~~~~~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~  100 (395)
T Consensus       131 C~~~C~FC~----T~~gGf~RNL~~~EIi~Qv~~~~k~~G~~~~~~erP~~nvV~MGmGEP-L~Nl~~vv~a~ei~n~~~  205 (378)
T TIGR00048       131 CALGCTFCA----TAKGGFNRNLEASEIIGQVLRVQKILGAAEETGERPVSNVVFMGMGEP-LLNLNEVVKALEILNDDV  205 (378)
T ss_pred             CCCCCCCCC----CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-CCCHHHHHHHHHHHHHHH
T ss_conf             422551033----457875214510338999999999834557776654047887467871-011799999999874222


Q ss_pred             C--CCCCCCCCCCCCCCCCHHHHHHHHHH--CCCCCEEEECCCCCCHHHHH---HHCCCCCHHHHHHHH-HHHCCCC---
Q ss_conf             6--44433211332104100234776630--34541143234332013455---422443134789999-8630244---
Q gi|254780628|r  101 T--VSSNVEITIEANPSSVEVNNFQGYRK--AGVNRISLGVQSLEEQSLRF---LGRNHNASEAIAAIH-LARNIFP---  169 (395)
Q Consensus       101 ~--~~~~~e~t~E~~P~~~~~~~l~~l~~--~Gv~RiS~GvQs~~~~~l~~---~~R~~~~~~~~~~~~-~~~~~~~---  169 (395)
T Consensus       206 g~~is~-r~~T~STs---Gv~~ki~~Lad~~l~V~-lAiSLHApn~~~R~~l~P~nk~Y~ie~ll~~vr~Y~~~~~~n~G  280 (378)
T TIGR00048       206 GLGISK-RRITISTS---GVVPKIDELADKMLQVA-LAISLHAPNDELRSSLMPINKKYNIETLLAAVRRYLEKTGRNQG  280 (378)
T ss_pred             HCCCCC-CEEEEEEC---CHHHHHHHHCCCCCCEE-EEEEECCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             036567-33788735---71458888513211033-44553288711244406500147867999999875864276777


Q ss_pred             CCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             43332-10002585432211127887531800123464688259600014544980211035678899986557887096
Q gi|254780628|r  170 RMSFD-LIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGL  248 (395)
Q Consensus       170 ~v~iD-li~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY  248 (395)
T Consensus       281 RV~fEY~Ll~~vND~~~HA-~~La~lL~g~~ckvNLIP~NP~~e~~Y~R---------~s~-~~i~~F---~~~L~s~g~  346 (378)
T TIGR00048       281 RVTFEYVLLDGVNDQVEHA-EELAELLKGVKCKVNLIPFNPFPEADYER---------PSN-EQIDRF---AKVLKSKGL  346 (378)
T ss_pred             CEEEEEEECCCCCCCHHHH-HHHHHHHCCCCCEEEEEECCCCCCCCCCC---------CCH-HHHHHH---HHHHHHCCC
T ss_conf             2688742002468858899-99999856998504012137879888888---------808-899999---998620883


Q ss_pred             C
Q ss_conf             2
Q gi|254780628|r  249 H  249 (395)
Q Consensus       249 ~  249 (395)
T Consensus       347 ~  347 (378)
T TIGR00048       347 T  347 (378)
T ss_pred             E
T ss_conf             7