HHsearch alignment for GI: 254780628 and conserved domain: TIGR00510
>TIGR00510 lipA lipoic acid synthetase; InterPro: IPR003698 Lipoic acid is a covalently bound disulphide-containing cofactor required for function of the pyruvate dehydrogenase, alpha-ketoglutarate dehydrogenase, and glycine cleavage enzyme complexes of Escherichia coli. Two genes, lipA and lipB, are involved in lipoic acid biosynthesis or metabolism. LipA is required for the insertion of the first sulphur into the octanoic acid backbone. LipB functions downstream of LipA, but its role in lipoic acid metabolism remains unclear . Lipoate synthase (or lipoic acid synthetase) catalyses the formation of alpha-(+)-lipoic acid, required for lipoate biosynthesis.; GO: 0016992 lipoate synthase activity, 0009107 lipoate biosynthetic process.
Probab=96.71 E-value=0.0086 Score=38.63 Aligned_cols=207 Identities=14% Similarity=0.159 Sum_probs=118.0
Q ss_pred CCCCCCCCCCCCCEEE-ECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE-----EECCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 0651183765773024-5788662889999999999999876189505899-----962888887899999999976640
Q gi|254780628|r 25 WPFCVKKCPYCDFNSH-VRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI-----FFGGGTPSLIEPQNIALILDGIAK 98 (395)
Q Consensus 25 iPFC~~~C~yC~f~~~-~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i-----y~GGGTPs~l~~~~l~~ll~~i~~ 98 (395)
T Consensus 76 g~~c~~~c~fc~~~~~~~p~~pdp~ep--~~~~~~~~~~~--l~~~~~~~~~~ddl~dgg-------~~~~~~~~~~~~~ 144 (310)
T TIGR00510 76 GDICTRRCPFCDVAHGRNPLPPDPEEP--EKLAETIKDLG--LKYVVITSVDRDDLEDGG-------AGHLAECVEALRE 144 (310)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCH--HHHHHHHHHHC--CCEEEEEECCCCCCCCCC-------HHHHHHHHHHHHH
T ss_conf 136522476310224677898873322--56899998730--553577512200023453-------4678999999875
Q ss_pred CCCCCCCCCCCCCC-CCCCC--HHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCC--C
Q ss_conf 47644433211332-10410--0234776630345411432343320134554224431347899998630244433--3
Q gi|254780628|r 99 NWTVSSNVEITIEA-NPSSV--EVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRMS--F 173 (395)
Q Consensus 99 ~~~~~~~~e~t~E~-~P~~~--~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~~~~v~--i 173 (395)
T Consensus 145 ~~p~-----~~~e~l~~df~g~~~~~~~~~~~~~~~~~~hn~e~~~~~~~~~~~~~~~y~~~l~~l~~~~~~~p~~~~k~ 219 (310)
T TIGR00510 145 KLPN-----IKIETLVPDFRGRDLKALDILLDAPPDVYNHNLETVPRLTPFVRPRGATYRWSLKLLERAKETLPNLPTKS 219 (310)
T ss_pred HCCC-----CEEEEECCCCCHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 2454-----13210013201046899998862461345301123345433330133216889999999887503210112
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 21000258543221112788753180012346468825960001454498021103567889998655788709624236
Q gi|254780628|r 174 DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYEI 253 (395)
Q Consensus 174 Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Yei 253 (395)
T Consensus 220 g~~~gl-ge~~~~~~~~~~dl~~~g~~~~~~g~y~~p----~~~h~p~~~y~~p------~~fd~~~~~~~~~gf~~~~~ 288 (310)
T TIGR00510 220 GLMVGL-GETNEEILQTLKDLRDHGVTVLTLGQYLRP----SRRHLPVKRYVSP------EEFDYWKERALELGFLHAAC 288 (310)
T ss_pred CCEECC-CCCHHHHHHHHHHHHHCCCCEEECCCHHCC----HHHCCCCHHCCCC------CHHHHHHHHHHHHHHHHHHC
T ss_conf 201104-752478999999898637405650101052----0012530002574------02467887776510244320
Q ss_pred CCHHH
Q ss_conf 74343
Q gi|254780628|r 254 SNHSF 258 (395)
Q Consensus 254 s~fak 258 (395)
T Consensus 289 gp~~~ 293 (310)
T TIGR00510 289 GPFVR 293 (310)
T ss_pred CCHHH
T ss_conf 42021