HHsearch alignment for GI: 254780628 and conserved domain: TIGR00538

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=627.57  Aligned_cols=385  Identities=21%  Similarity=0.346  Sum_probs=350.9

Q ss_pred             HHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCC-CEEEEEEECCCCC
Q ss_conf             137899884288988549999406511837657730245788662889999999999999876189-5058999628888
Q gi|254780628|r    3 YLSAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGP-RSISSIFFGGGTP   81 (395)
Q Consensus         3 ~~~~~~~~~~~~~~~~l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~-~~~~~iy~GGGTP   81 (395)
T Consensus        36 f~~a~~~~nnl~~~~PLSLY~HiPFC~~~CyFCgCn~I~t~~~~~~~~YL~~l~ke~~l~~~~~d~~R~V~QLHwGGGTP  115 (462)
T TIGR00538        36 FKTALIKSNNLYKKTPLSLYVHIPFCEKACYFCGCNVIITRRKEKKDPYLEALKKEIALVAPLLDKDREVAQLHWGGGTP  115 (462)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             99998722567888784112455234121320146611305565101679999999999877752489468876278983


Q ss_pred             CCCCHHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHH
Q ss_conf             87899999999976640476-44433211332104100234776630345411432343320134554224431347899
Q gi|254780628|r   82 SLIEPQNIALILDGIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAA  160 (395)
Q Consensus        82 s~l~~~~l~~ll~~i~~~~~-~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~  160 (395)
T Consensus       116 ~YL~~~Q~~~l~~~i~~~F~nf~~daEiSiEidPR~~~~e~~~~L~~~GFNRlS~GvQDfd~~VQ~avnR~QP~e~i~~~  195 (462)
T TIGR00538       116 TYLSPEQIEELMKEIREAFPNFSEDAEISIEIDPRYLTKEVIKALRDEGFNRLSFGVQDFDKEVQQAVNRIQPEEMIFEL  195 (462)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEECCEECCCHHHHHHHCCCCCHHHHHHH
T ss_conf             33788999999999998732011584477652374137889999997589664235210785554443134868999999


Q ss_pred             HHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHH
Q ss_conf             9986302-444333210002585432211127887531800123464688259600014544980211035678899986
Q gi|254780628|r  161 IHLARNI-FPRMSFDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLT  239 (395)
Q Consensus       161 ~~~~~~~-~~~v~iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a  239 (395)
T Consensus       196 ~~~~R~~Gf~SiN~DLIYGLP~Qt~esF~~Tl~~v~~LnPDRlAvFnyAyvP~-vk~~q~k~~~~~LPS~~~KL~Il~~~  274 (462)
T TIGR00538       196 MEKAREAGFESINLDLIYGLPKQTKESFEKTLEKVAELNPDRLAVFNYAYVPW-VKPAQRKIPEEALPSAEEKLEILEET  274 (462)
T ss_pred             HHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEHHHHHHHHCC-HHHHHCCCCHHCCCCHHHHHHHHHHH
T ss_conf             99998669827874201388887867899999998531877001210222101-57785027620058878999999999


Q ss_pred             HHHHHHCCCCCCCCCCHHHHHHH----------HCCCCCCCC--CCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHH
Q ss_conf             55788709624236743431011----------013321124--441232043200115788615786542470257787
Q gi|254780628|r  240 QSITSAHGLHAYEISNHSFLGAE----------SLHNLNYWR--YGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKM  307 (395)
Q Consensus       240 ~e~L~~~GY~~Yeis~fak~~~~----------s~hn~~Yw~--~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~  307 (395)
T Consensus       275 I~~L~~~gY~fIGMDHFAkpddELavAqr~geL~RNFQGYTT~~~~~lLG~GvtSIsm~~D----~Y~QN~K~L~~Y~~~  350 (462)
T TIGR00538       275 IAFLTEAGYVFIGMDHFAKPDDELAVAQRKGELHRNFQGYTTKKETDLLGFGVTSISMLGD----VYAQNYKTLKDYYKA  350 (462)
T ss_pred             HHHHHHCCCEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECHHHHHHHCC----CCCCCCHHHHHHHHH
T ss_conf             9999757975851445779713899998505300057652248972156301102112002----122553668889875


Q ss_pred             HHCCCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHH------HHHHHCCCEEEEECCEEE
Q ss_conf             753896333224549999899999996562379988899988389----9649999------999987994985598999
Q gi|254780628|r  308 VRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAGR----NLDIECE------RNLQRQGFIERVQFSRLR  377 (395)
Q Consensus       308 i~~~~~p~~~~~~Ls~~e~~~e~l~~~LR~~~Gid~~~~~~~fg~----~~~~~~~------~~L~~~Gli~~~~~~~l~  377 (395)
T Consensus       351 lD~~~~pv~rG~~L~~dD~iRr~VI~~lmcnl~l~y~~iE~~f~~GfdC~F~~YFakeL~~L~~le~dGLl~-~~~~G~~  429 (462)
T TIGR00538       351 LDEGKLPVERGVALSQDDLIRREVIKELMCNLKLDYSKIEEKFDLGFDCDFKDYFAKELEKLKPLEEDGLLK-VEEDGIE  429 (462)
T ss_pred             HHCCCCCEEECEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEE-ECCCCEE
T ss_conf             200578451051006122202889999986237666777645078854686899899888653897638604-5178337


Q ss_pred             ECHHHHHHHHHHHHHH
Q ss_conf             9567589899999986
Q gi|254780628|r  378 CTQRGMTMLDSVIANL  393 (395)
Q Consensus       378 lT~~G~~~~d~I~~~l  393 (395)
T Consensus       430 vt~~GRlLiRN~Am~F  445 (462)
T TIGR00538       430 VTPKGRLLIRNIAMVF  445 (462)
T ss_pred             EECCCCCEEEHHHHHH
T ss_conf             8047870120188762