HHsearch alignment for GI: 254780628 and conserved domain: TIGR00539

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=100.00  E-value=0  Score=654.37  Aligned_cols=361  Identities=35%  Similarity=0.652  Sum_probs=334.3

Q ss_pred             EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC----CCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf             4999940651183765773024578866288999999999999987618----950589996288888789999999997
Q gi|254780628|r   19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTG----PRSISSIFFGGGTPSLIEPQNIALILD   94 (395)
Q Consensus        19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~----~~~~~~iy~GGGTPs~l~~~~l~~ll~   94 (395)
T Consensus         1 ~slYIHIPfCe~kC~YCdFNsy~~ksd~p~~eY~~aL~~dl~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~   80 (371)
T TIGR00539         1 LSLYIHIPFCEQKCGYCDFNSYAQKSDIPKEEYLQALLQDLKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLE   80 (371)
T ss_pred             CEEEEECCHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf             91355560223758886533245542785679999999999999986044323676556885688741468999999999


Q ss_pred             HHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCC
Q ss_conf             6640476-444332113321041002347766303454114323433201345542244313478999986302-44433
Q gi|254780628|r   95 GIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMS  172 (395)
Q Consensus        95 ~i~~~~~-~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~  172 (395)
T Consensus        81 ~I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~enis  160 (371)
T TIGR00539        81 EIKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLENIS  160 (371)
T ss_pred             HHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             98752174310211111078212569886367655702332133454155788864211333466799999871752000


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf             32100025854322111278875318001234646882596000145449802110356788999865578870962423
Q gi|254780628|r  173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE  252 (395)
Q Consensus       173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye  252 (395)
T Consensus       161 lDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~a~~~e~v~~~le~~g~~QYE  240 (371)
T TIGR00539       161 LDLMYGLPLQTLEELKEELKLALELDAEHLSVYALIVEPNTVFEKRAKKGRLHLPDDDALAEIYEVVRELLEAFGYKQYE  240 (371)
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf             55440786134899999986553178451123323422330454268888789467034567999999999855822221


Q ss_pred             CCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf             67434310110133211244412320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r  253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM  332 (395)
Q Consensus       253 is~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~  332 (395)
T Consensus       241 ~SnyAkaG~q~KHNL~YW~~~dYlg~GaGA~G~~~~~r----~~~~~~~k~yi~~~~~rg~~~~~~~~V~k~d~~~E~~f  316 (371)
T TIGR00539       241 VSNYAKAGYQVKHNLAYWSAEDYLGIGAGAHGKVANER----TVAKKLVKNYIDKILERGVELLDEKEVTKEDKRLEKLF  316 (371)
T ss_pred             HHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEECCCCE----EEEECCHHHHCCCHHHCCCCHHCCCCCCHHHHHHHHHH
T ss_conf             23886378762002233676661353374010014740----25643023312203442630010357760335689988


Q ss_pred             HHHHHCCCCCHHHHHHHHCCCHHHH---HHHHHHHCCCEEEEECCEEEECHHHHHH
Q ss_conf             9656237998889998838996499---9999998799498559899995675898
Q gi|254780628|r  333 MGLRLREGISVKDWEMLAGRNLDIE---CERNLQRQGFIERVQFSRLRCTQRGMTM  385 (395)
Q Consensus       333 ~~LR~~~Gid~~~~~~~fg~~~~~~---~~~~L~~~Gli~~~~~~~l~lT~~G~~~  385 (395)
T Consensus       317 lglR~~~gV~k~~f~e~~G~S~~~~~~~~~ka~~~n~~~~--nsds~~~~eh~~~~  370 (371)
T TIGR00539       317 LGLRLVEGVEKKEFEEKKGLSLSKLLIEVDKALAKNNLVE--NSDSFVILEHAKLY  370 (371)
T ss_pred             HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHC
T ss_conf             5447662354234421026306777778889998745213--46789999987632