HHsearch alignment for GI: 254780628 and conserved domain: TIGR00539
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004559 Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins called HemN (IPR004558 from INTERPRO). This family contains a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including Escherichia coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the Escherichia coli hemN family. The member of this family from Bacillus subtilis was shown to complement a hemF/hemN double mutant of Salmonella typhimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize haem de novo. ; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=654.37 Aligned_cols=361 Identities=35% Similarity=0.652 Sum_probs=334.3
Q ss_pred EEEEEECCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHC----CCEEEEEEECCCCCCCCCHHHHHHHHH
Q ss_conf 4999940651183765773024578866288999999999999987618----950589996288888789999999997
Q gi|254780628|r 19 LGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTG----PRSISSIFFGGGTPSLIEPQNIALILD 94 (395)
Q Consensus 19 l~lYihiPFC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~----~~~~~~iy~GGGTPs~l~~~~l~~ll~ 94 (395)
T Consensus 1 ~slYIHIPfCe~kC~YCdFNsy~~ksd~p~~eY~~aL~~dl~~~l~~t~dsiqQ~~l~siFIGGGTP~~lS~e~~~~l~~ 80 (371)
T TIGR00539 1 LSLYIHIPFCEQKCGYCDFNSYAQKSDIPKEEYLQALLQDLKAALAKTDDSIQQEDLKSIFIGGGTPSLLSAEALKKLLE 80 (371)
T ss_pred CEEEEECCHHCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 91355560223758886533245542785679999999999999986044323676556885688741468999999999
Q ss_pred HHHHCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCCCCHHHHHHHHHHHCC-CCCCC
Q ss_conf 6640476-444332113321041002347766303454114323433201345542244313478999986302-44433
Q gi|254780628|r 95 GIAKNWT-VSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNI-FPRMS 172 (395)
Q Consensus 95 ~i~~~~~-~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~~~~~~-~~~v~ 172 (395)
T Consensus 81 ~I~~~~~P~sd~~Eit~eANP~~~~ae~~kglk~aGinRlS~GvQsF~dDkL~~lgR~H~~k~~~~a~e~a~~sG~enis 160 (371)
T TIGR00539 81 EIKKQLKPLSDDIEITVEANPDLVEAEKLKGLKEAGINRLSLGVQSFEDDKLEKLGRVHKAKDVASAVELAKKSGLENIS 160 (371)
T ss_pred HHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 98752174310211111078212569886367655702332133454155788864211333466799999871752000
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 32100025854322111278875318001234646882596000145449802110356788999865578870962423
Q gi|254780628|r 173 FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSITSAHGLHAYE 252 (395)
Q Consensus 173 iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~~a~e~L~~~GY~~Ye 252 (395)
T Consensus 161 lDL~~glP~qtl~~l~~~l~~A~eL~~~H~S~Y~L~vEpnT~f~~~~~KGrlhlP~~~~~a~~~e~v~~~le~~g~~QYE 240 (371)
T TIGR00539 161 LDLMYGLPLQTLEELKEELKLALELDAEHLSVYALIVEPNTVFEKRAKKGRLHLPDDDALAEIYEVVRELLEAFGYKQYE 240 (371)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 55440786134899999986553178451123323422330454268888789467034567999999999855822221
Q ss_pred CCCHHHHHHHHCCCCCCCCCCCEEECCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCEEECCHHHHHHHHHH
Q ss_conf 67434310110133211244412320432001157886157865424702577877538963332245499998999999
Q gi|254780628|r 253 ISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLM 332 (395)
Q Consensus 253 is~fak~~~~s~hn~~Yw~~~d~iG~G~GA~S~l~~~~~~~~~~~~~~~~~Y~~~i~~~~~p~~~~~~Ls~~e~~~e~l~ 332 (395)
T Consensus 241 ~SnyAkaG~q~KHNL~YW~~~dYlg~GaGA~G~~~~~r----~~~~~~~k~yi~~~~~rg~~~~~~~~V~k~d~~~E~~f 316 (371)
T TIGR00539 241 VSNYAKAGYQVKHNLAYWSAEDYLGIGAGAHGKVANER----TVAKKLVKNYIDKILERGVELLDEKEVTKEDKRLEKLF 316 (371)
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEECCCEEEECCCCE----EEEECCHHHHCCCHHHCCCCHHCCCCCCHHHHHHHHHH
T ss_conf 23886378762002233676661353374010014740----25643023312203442630010357760335689988
Q ss_pred HHHHHCCCCCHHHHHHHHCCCHHHH---HHHHHHHCCCEEEEECCEEEECHHHHHH
Q ss_conf 9656237998889998838996499---9999998799498559899995675898
Q gi|254780628|r 333 MGLRLREGISVKDWEMLAGRNLDIE---CERNLQRQGFIERVQFSRLRCTQRGMTM 385 (395)
Q Consensus 333 ~~LR~~~Gid~~~~~~~fg~~~~~~---~~~~L~~~Gli~~~~~~~l~lT~~G~~~ 385 (395)
T Consensus 317 lglR~~~gV~k~~f~e~~G~S~~~~~~~~~ka~~~n~~~~--nsds~~~~eh~~~~ 370 (371)
T TIGR00539 317 LGLRLVEGVEKKEFEEKKGLSLSKLLIEVDKALAKNNLVE--NSDSFVILEHAKLY 370 (371)
T ss_pred HHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHC
T ss_conf 5447662354234421026306777778889998745213--46789999987632