HHsearch alignment for GI: 254780628 and conserved domain: TIGR01125
>TIGR01125 TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125; InterPro: IPR005840 This is a family of mainly hypothetical proteins of unknown function. .
Probab=99.57 E-value=2.5e-14 Score=115.10 Aligned_cols=190 Identities=16% Similarity=0.288 Sum_probs=143.3
Q ss_pred EEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEE------EE-----EE-----ECCCCCCCC
Q ss_conf 994065-11837657730245788662889999999999999876189505------89-----99-----628888878
Q gi|254780628|r 22 YVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSI------SS-----IF-----FGGGTPSLI 84 (395)
Q Consensus 22 YihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~------~~-----iy-----~GGGTPs~l 84 (395)
T Consensus 167 YlKvaEGC~~~CaFCiIP~~rG~---~rSR~ie~i~~Ea~~L~~~Gv-KEiiliaQDTt~YG~DL~~R~~~~~~-e~--- 238 (475)
T TIGR01125 167 YLKVAEGCNRRCAFCIIPSLRGK---LRSRPIEEILKEAKRLVDQGV-KEIILIAQDTTAYGVDLYTRESEFDG-EQ--- 238 (475)
T ss_pred EEEECCCCCCCCCEECCCCCCCC---CCCCCHHHHHHHHHHHHHCCC-CEEEEEEEECCCCCCEEEECCCCCCC-HH---
T ss_conf 68700577898652136233677---677688889999999984398-38999964034776411110552240-14---
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC-CC-CCEEEECCCCCCHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99999999976640476444332113321041002347766303-45-41143234332013455422443134789999
Q gi|254780628|r 85 EPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKA-GV-NRISLGVQSLEEQSLRFLGRNHNASEAIAAIH 162 (395)
Q Consensus 85 ~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~-Gv-~RiS~GvQs~~~~~l~~~~R~~~~~~~~~~~~ 162 (395)
T Consensus 239 v~~~L~~Ll~~L~k~~G~~WiR--~~YlYP~~~~~~vI~~m~~~~KvLPYlDiPLQH~sd~ILK~M~R~~~~~~~~~~i~ 316 (475)
T TIGR01125 239 VKSKLVELLEELGKLGGIYWIR--LLYLYPDELTDDVIDLMAEGPKVLPYLDIPLQHASDRILKLMRRPGSGEEQLDLIE 316 (475)
T ss_pred HHHHHHHHHHHHHHCCCCCEEE--EEEECCCCCCHHHHHHHHCCCCCCCEECCCCCCCCHHHHHCCCCCCCHHHHHHHHH
T ss_conf 5789999999740058962278--88760888866788998638980512254312387378742789963889999999
Q ss_pred HHHCCCCCCCC--CCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHC
Q ss_conf 86302444333--210002585432211127887531800123464688259600014544
Q gi|254780628|r 163 LARNIFPRMSF--DLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKD 221 (395)
Q Consensus 163 ~~~~~~~~v~i--Dli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~ 221 (395)
T Consensus 317 ~~R~~~P~~vlRttfIVGFPGETEEdF~eL~~Fv~e~~~D~lG~F~YS~eEgt~A~~Lpd~ 377 (475)
T TIGR01125 317 RLREKVPDAVLRTTFIVGFPGETEEDFQELLDFVEEGQFDRLGVFTYSPEEGTDAFALPDQ 377 (475)
T ss_pred HHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHCCCCC
T ss_conf 9997556617722468868899878899999998520215000020783236603507788