HHsearch alignment for GI: 254780628 and conserved domain: TIGR01574
>TIGR01574 miaB-methiolase tRNA-i(6)A37 thiotransferase enzyme MiaB; InterPro: IPR006463 These sequences are homologs of the MiaB enzyme responsible for the modification of the isopentenylated adenine-37 base of most bacterial and eukaryotic tRNAs that read codons beginning with uracil (all except tRNA(I,V) Ser). Adenine-37 is next to the anticodon on the 3 side in these tRNAs, and lack of modification at this site leads to an increased spontaneous mutation frequency. Isopentenylated A-37 is modified by methylthiolation at position 2, either by MiaB alone or in concert with a separate methylase yet to be discovered (MiaC?) , , ..
Probab=99.87 E-value=1.5e-21 Score=162.99 Aligned_cols=203 Identities=20% Similarity=0.275 Sum_probs=154.1
Q ss_pred EEEEEECCC-CCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEE------E----E--CCCCCCCCC
Q ss_conf 499994065-11837657730245788662889999999999999876189505899------9----6--288888789
Q gi|254780628|r 19 LGVYVHWPF-CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSI------F----F--GGGTPSLIE 85 (395)
Q Consensus 19 l~lYihiPF-C~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~i------y----~--GGGTPs~l~ 85 (395)
T Consensus 155 ~~sfv~Im~GCdkfCtYC---iVPYtRG~E~Sr~~~~Il~Ev~~l~~~-G~kEi~LLGQNVN~YRG~~frne~-~--~~~ 227 (456)
T TIGR01574 155 FKSFVNIMEGCDKFCTYC---IVPYTRGEEISRPLDDILQEVQKLAEK-GVKEITLLGQNVNAYRGKDFRNEG-K--TVD 227 (456)
T ss_pred CEEEEECCCCCCCCCCEE---ECCCCCCCCCCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCCCCCCCCCCC-C--EEC
T ss_conf 225240314768854546---615304820125744699999999865-864874036530111587522588-6--736
Q ss_pred HHHHHHHHHHHH----HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCEEEECCCCCCHHHHHHHCCCCCHHHHH
Q ss_conf 999999997664----04764443321133210410023477663034--541143234332013455422443134789
Q gi|254780628|r 86 PQNIALILDGIA----KNWTVSSNVEITIEANPSSVEVNNFQGYRKAG--VNRISLGVQSLEEQSLRFLGRNHNASEAIA 159 (395)
Q Consensus 86 ~~~l~~ll~~i~----~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G--v~RiS~GvQs~~~~~l~~~~R~~~~~~~~~ 159 (395)
T Consensus 228 ---f~dLL~~l~rrCe~~~~i~RIRFts--SHP~~~~D~liev~a~~~~l~~~~HLPvQsGS~~vLk~M~R~Yt~e~Y~~ 302 (456)
T TIGR01574 228 ---FADLLRELARRCEVKDGIERIRFTS--SHPKDFDDDLIEVLAKEPKLCKLLHLPVQSGSSEVLKLMKRKYTRERYLE 302 (456)
T ss_pred ---HHHHHHHHHHHCCHHHCCCCEEECC--CCCCCCCHHHHHHHHCCCCEEEEECCCCEECHHHHHHHCCCCCCHHHHHH
T ss_conf ---6999999987510221585113137--87876544687887378946666437520070799851077556899999
Q ss_pred HHHHHHCCCCCCC--CCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEEEEEECCCEEHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 9998630244433--32100025854322111278875318001234646882596000145449802110356788999
Q gi|254780628|r 160 AIHLARNIFPRMS--FDLIYALPKQTMTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYN 237 (395)
Q Consensus 160 ~~~~~~~~~~~v~--iDli~GlPgqt~e~~~~~l~~~~~l~p~~is~Y~l~i~~~t~l~~~~~~~~~~~p~~~~~~~~~~ 237 (395)
T Consensus 303 ~v~KLk~~~Pnv~lStDiivGFPGEt~edFE~Tl~l~~~V~Fd~~f~F~Ys~ReGTpAa~m~d~----vp~~~~~~RL~~ 378 (456)
T TIGR01574 303 LVRKLKEAVPNVSLSTDIIVGFPGETEEDFEETLDLLREVEFDSAFSFIYSPREGTPAADMPDD----VPEEVKKERLQR 378 (456)
T ss_pred HHHHHHHHCCCCEECCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCC----CCHHHHHHHHHH
T ss_conf 9999987378712124536736877846689999998522624123344138676855678788----648999999999