HHsearch alignment for GI: 254780628 and conserved domain: TIGR03278
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=97.62 E-value=0.0028 Score=41.82 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=83.1
Q ss_pred EEEEE-EECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHH
Q ss_conf 05899-96288888789999999997664047644433211332104100234776630345411432343320134554
Q gi|254780628|r 70 SISSI-FFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFL 148 (395)
Q Consensus 70 ~~~~i-y~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~ 148 (395)
T Consensus 73 ~~~kitISgGGD~ScYP--~l~eL~~~l~~~-~lpiHLGYT--SGKGfd~~~~a~~li~~Gv~EVtfTVFatDp~LR~ew 147 (404)
T TIGR03278 73 RDTKVTISGGGDVSCYP--ELEELTKGLSDL-GLPIHLGYT--SGKGFDDPEIAEFLIDNGVREVSFTVFATDPELRREW 147 (404)
T ss_pred CCEEEEEECCCCCCCCC--CHHHHHHHHHHC-CCCEEECCC--CCCCCCCHHHHHHHHHCCCCEEEEEEEECCHHHHHHH
T ss_conf 72289980798844163--199999999866-983574123--7889898799999996797379999860898999987
Q ss_pred HCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHHCCCCCEEEEEE
Q ss_conf 224431347899998630244433321000258543-22111278875318001234646
Q gi|254780628|r 149 GRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTM-TQWEMELQRALSYAVDHLSLYQL 207 (395)
Q Consensus 149 ~R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~-e~~~~~l~~~~~l~p~~is~Y~l 207 (395)
T Consensus 148 M~D~~pE~SL~~L~~fc~~cev~~A--~ViiPGVNDGevL~kT~~~Le~wGakg~ILMRF 205 (404)
T TIGR03278 148 MKDPTPEASLQCLRRFCESCEVHAA--SVIIPGVNDGDVLWKTCADLESWGAKALILMRF 205 (404)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHEEE--EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 1699868899999999844111378--998068685699999999999838756898740