HHsearch alignment for GI: 254780628 and conserved domain: cd01335
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.84 E-value=1.4e-20 Score=156.49 Aligned_cols=182 Identities=20% Similarity=0.284 Sum_probs=142.8
Q ss_pred CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 51183765773024578866288999999999999987618950589996288888789999999997664047644433
Q gi|254780628|r 27 FCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV 106 (395)
Q Consensus 27 FC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~ 106 (395)
T Consensus 6 GC~~~C~fC~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~--~~~~~l~~~~~~~---~~~ 75 (204)
T cd01335 6 GCNLNCGFCSNPASKGRGPESP-PEIEEILDIVL----EAKERGVEVVILTGGEPLLYP--ELAELLRRLKKEL---PGF 75 (204)
T ss_pred CCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHH----HHHHCCCEEEEEECCCCCCCC--CCCHHHHHHHHCC---CCC
T ss_conf 7385698799875479875667-88999999999----998759869997246766665--3210135455306---871
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2113321041002347766303454114323433201345542-244313478999986302444333210002585432
Q gi|254780628|r 107 EITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT 185 (395)
Q Consensus 107 e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e 185 (395)
T Consensus 76 ~i~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~G~p~et~~ 155 (204)
T cd01335 76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEE 155 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHH
T ss_conf 79998336547699987754037542222435689999999848899759999999999867998999999827999999
Q ss_pred CCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHHH
Q ss_conf 2111278875318-00123464688259600014
Q gi|254780628|r 186 QWEMELQRALSYA-VDHLSLYQLTIEKGTLFYKM 218 (395)
Q Consensus 186 ~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~~ 218 (395)
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~p~~gt~~~~~ 189 (204)
T cd01335 156 DDLEELELLAEFRSPDRVSLFRLLPEEGTPLELA 189 (204)
T ss_pred HHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHC
T ss_conf 9999999998518998898987662289803338