HHsearch alignment for GI: 254780628 and conserved domain: cd01335

>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=99.84  E-value=1.4e-20  Score=156.49  Aligned_cols=182  Identities=20%  Similarity=0.284  Sum_probs=142.8

Q ss_pred             CCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             51183765773024578866288999999999999987618950589996288888789999999997664047644433
Q gi|254780628|r   27 FCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNV  106 (395)
Q Consensus        27 FC~~~C~yC~f~~~~~~~~~~~~~y~~~l~~Ei~~~~~~~~~~~~~~iy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~  106 (395)
T Consensus         6 GC~~~C~fC~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~--~~~~~l~~~~~~~---~~~   75 (204)
T cd01335           6 GCNLNCGFCSNPASKGRGPESP-PEIEEILDIVL----EAKERGVEVVILTGGEPLLYP--ELAELLRRLKKEL---PGF   75 (204)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHHH----HHHHCCCEEEEEECCCCCCCC--CCCHHHHHHHHCC---CCC
T ss_conf             7385698799875479875667-88999999999----998759869997246766665--3210135455306---871


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH-CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             2113321041002347766303454114323433201345542-244313478999986302444333210002585432
Q gi|254780628|r  107 EITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRFLG-RNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMT  185 (395)
Q Consensus       107 e~t~E~~P~~~~~~~l~~l~~~Gv~RiS~GvQs~~~~~l~~~~-R~~~~~~~~~~~~~~~~~~~~v~iDli~GlPgqt~e  185 (395)
T Consensus        76 ~i~~~t~~~~~~~~~l~~l~~~g~~~~~i~les~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~G~p~et~~  155 (204)
T cd01335          76 EISIETNGTLLTEELLKELKELGLDGVGVSLDSGDEEVADKIRGSGESFKERLEALKELREAGLGLSTTLLVGLGDEDEE  155 (204)
T ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHH
T ss_conf             79998336547699987754037542222435689999999848899759999999999867998999999827999999


Q ss_pred             CCCCCHHHHHHCC-CCCEEEEEEEEECCCEEHHH
Q ss_conf             2111278875318-00123464688259600014
Q gi|254780628|r  186 QWEMELQRALSYA-VDHLSLYQLTIEKGTLFYKM  218 (395)
Q Consensus       186 ~~~~~l~~~~~l~-p~~is~Y~l~i~~~t~l~~~  218 (395)
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~p~~gt~~~~~  189 (204)
T cd01335         156 DDLEELELLAEFRSPDRVSLFRLLPEEGTPLELA  189 (204)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHC
T ss_conf             9999999998518998898987662289803338