HHSEARCH alignment of GI: 254780628 and SCOP domain: d3ctaa1

Alignment

Probab=91.79  E-value=0.39  Score=24.63  Aligned_cols=54  Identities=20%  Similarity=0.321  Sum_probs=43.0

Q ss_pred             CCCHHHHHHHHCCCHH--HHHHHHHHHCCCEEEEECC---EEEECHHHHHHHHHHHHHH
Q ss_conf             9988899988389964--9999999987994985598---9999567589899999986
Q gi|254780628|r  340 GISVKDWEMLAGRNLD--IECERNLQRQGFIERVQFS---RLRCTQRGMTMLDSVIANL  393 (395)
Q Consensus       340 Gid~~~~~~~fg~~~~--~~~~~~L~~~Gli~~~~~~---~l~lT~~G~~~~d~I~~~l  393 (395)
                      +++..++.+..+.+..  ...++.|+++|||.+..++   .+.||++|+.++..+..++
T Consensus        21 ~lt~~eLa~~l~i~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~~l~~~~~~~   79 (85)
T d3ctaa1          21 YLTSSKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYTEFADL   79 (85)
T ss_dssp             ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCEECHHHHHHHHHHHHHH
T ss_conf             98899999998878878999999999879804312455430007899999999999999

SCOP domain information

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]