RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780628|ref|YP_003065041.1| coproporphyrinogen III oxidase
[Candidatus Liberibacter asiaticus str. psy62]
         (395 letters)



>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III
           oxidase HemN {Escherichia coli [TaxId: 562]}
          Length = 441

 Score =  207 bits (527), Expect = 1e-54
 Identities = 82/406 (20%), Positives = 163/406 (40%), Gaps = 25/406 (6%)

Query: 5   SAYENNMTGQGSNSLGVYVHWPFCVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQ 64
            A+   +       L +YVH PFC K C +C  N  V R +   + ++ +   E+     
Sbjct: 36  QAFLQAVARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAP 95

Query: 65  LTGPRSISSIFFGGGTPSLIEPQNIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQG 124
           L   R +S + +GGGTP+ +    I+ ++  + +N+  +++ EI+IE +P  +E++    
Sbjct: 96  LFAGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDH 155

Query: 125 YRKAGVNRISLGVQSLEEQSLRFLGRNHNASEAIAAIHLARNIFPRM-SFDLIYALPKQT 183
            R  G NR+S+GVQ   ++  R + R  +     A ++ AR I     + DLIY LPKQT
Sbjct: 156 LRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT 215

Query: 184 MTQWEMELQRALSYAVDHLSLYQLTIEKGTLFYKMHKDGDLVLPSENVAVDLYNLTQSIT 243
              +   L+R      D LS++           +     D  LPS    +D+   T +  
Sbjct: 216 PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIK-DADLPSPQQKLDILQETIAFL 274

Query: 244 SAHGLHAYEISNHSFLGAE------------SLHNLNYWRYGDYIGIGPGAHSRVKVGSH 291
           +  G     + + +    E            +          D +G+G  A S +     
Sbjct: 275 TQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYA 334

Query: 292 RVAISIEKHPESWLKMVRKNGHAVVEKEFLSSEQQADEFLMMGLRLREGISVKDWEMLAG 351
           +    ++++ +       + G+A+     L+ +      ++  L     +     E    
Sbjct: 335 QNQKELKQYYQQVD----EQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWD 390

Query: 352 RNL------DIECERNLQRQGFIERVQFSRLRCTQRGMTMLDSVIA 391
                    D++    L + G ++  +   ++ T +G  ++ ++  
Sbjct: 391 LLFADYFAEDLKLLAPLAKDGLVDVDE-KGIQVTAKGRLLIRNICM 435


>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate
           dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
           [TaxId: 53953]}
          Length = 172

 Score = 29.6 bits (66), Expect = 0.51
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 100 WTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLG 136
             +   V+I ++A P  +   N   Y KAGV  I  G
Sbjct: 74  NDLLEKVDIIVDATPGGIGAKNKPLYEKAGVKAIFQG 110


>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId:
           562]}
          Length = 312

 Score = 26.8 bits (58), Expect = 2.7
 Identities = 18/165 (10%), Positives = 44/165 (26%), Gaps = 9/165 (5%)

Query: 28  CVKKCPYCDFNSHVRRYKVGQENFIQSFLTEMQWMRQLTGPRSISSIFFGGGTPSLIEPQ 87
           C + C YC  +S  +     +       + E     +  G                  P 
Sbjct: 50  CPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPY 109

Query: 88  NIALILDGIAKNWTVSSNVEITIEANPSSVEVNNFQGYRKAGVNRISLGVQSLEEQSLRF 147
              ++             + +       ++  +  Q    AG++  +  + +  E     
Sbjct: 110 LEQMV--------QGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNI 161

Query: 148 LGRNHNASEAIAAIHLARNIFPRMSFDLIYALPKQTMTQWEMELQ 192
                   E +  +   R+   ++    I  L +    +  + LQ
Sbjct: 162 -ITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQ 205


>g1jmu.1 e.35.1.1 (A:,B:) Membrane penetration protein mu1 {Reovirus
           [TaxId: 10891]}
          Length = 666

 Score = 26.8 bits (59), Expect = 3.4
 Identities = 7/33 (21%), Positives = 9/33 (27%)

Query: 162 HLARNIFPRMSFDLIYALPKQTMTQWEMELQRA 194
              R I   M       +   T T W   L+  
Sbjct: 323 TWLRMIPKTMGTLFQIQVTDNTGTNWHFNLRGG 355


>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 301

 Score = 26.3 bits (57), Expect = 4.6
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 278 IGPGAHSRVKVGSHRVAISIEKHPESWLKMVRKNGHAVVEKEFL 321
           IG GA  RV        +  E      +KM+++   A ++ +F 
Sbjct: 21  IGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQ 64


>d2anua1 c.6.3.1 (A:5-233) Hypothetical protein TM0559 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 229

 Score = 25.8 bits (55), Expect = 5.8
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 245 AHGLHAYEISNHSFLGAESLHNLNYWRYGDYIGIGPGAHSRVKVGSHRVAISIEKHPESW 304
                A+EI+N   L                       H    V S +  +  EK+ E+ 
Sbjct: 159 KDTFDAWEIANRDDLFNSV------GVKKYRYVANSDFHELWHVYSWKTLVKSEKNIEAI 212

Query: 305 LKMVRKN 311
            + +RKN
Sbjct: 213 KEAIRKN 219


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0588    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,471,183
Number of extensions: 67600
Number of successful extensions: 174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 8
Length of query: 395
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 308
Effective length of database: 1,213,086
Effective search space: 373630488
Effective search space used: 373630488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)