Query gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 224
No_of_seqs 123 out of 2560
Neff 6.5
Searched_HMMs 39220
Date Sun May 29 21:08:20 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780629.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00120 putative deoxyribonuc 100.0 0 0 468.8 18.5 197 5-222 1-197 (197)
2 PRK02491 putative deoxyribonuc 100.0 0 0 459.8 18.1 197 5-221 126-323 (328)
3 TIGR00042 TIGR00042 non-canoni 100.0 0 0 463.2 13.6 194 8-219 1-205 (205)
4 COG0127 Xanthosine triphosphat 100.0 0 0 435.3 15.7 192 6-221 1-193 (194)
5 pfam01725 Ham1p_like Ham1 fami 100.0 0 0 420.8 17.1 181 9-218 1-181 (181)
6 cd00515 HAM1 NTPase/HAM1. Thi 100.0 0 0 421.0 16.2 183 9-217 1-183 (183)
7 KOG3222 consensus 100.0 0 0 300.0 13.7 188 4-222 2-191 (195)
8 cd00985 Maf_Ham1 Maf_Ham1. Maf 99.7 1.4E-17 3.6E-22 122.8 8.2 121 9-153 1-123 (131)
9 PRK04222 consensus 96.7 0.015 3.9E-07 35.4 8.6 111 5-142 1-116 (191)
10 PRK00148 Maf-like protein; Rev 96.1 0.066 1.7E-06 31.7 9.0 108 6-140 1-113 (195)
11 COG0424 Maf Nucleotide-binding 96.1 0.066 1.7E-06 31.7 8.8 112 5-143 1-118 (193)
12 PRK04719 consensus 95.6 0.19 4.8E-06 29.0 10.0 110 4-140 1-116 (188)
13 PRK01441 Maf-like protein; Rev 95.1 0.28 7.2E-06 28.0 9.7 112 6-143 4-126 (207)
14 PRK04425 Maf-like protein; Rev 94.7 0.37 9.3E-06 27.4 9.9 114 5-143 3-120 (196)
15 PRK01946 consensus 94.6 0.27 6.9E-06 28.1 7.9 113 2-140 4-122 (195)
16 PRK00648 Maf-like protein; Rev 94.5 0.23 5.8E-06 28.6 7.3 108 5-139 1-115 (191)
17 PRK03411 consensus 94.2 0.47 1.2E-05 26.7 9.0 104 6-138 1-111 (194)
18 PRK00884 Maf-like protein; Rev 94.2 0.41 1E-05 27.1 8.1 108 6-140 1-113 (194)
19 PRK00234 Maf-like protein; Rev 94.2 0.47 1.2E-05 26.7 8.5 107 6-139 1-112 (192)
20 PRK02478 Maf-like protein; Rev 93.9 0.54 1.4E-05 26.4 8.3 113 5-142 1-122 (199)
21 PRK03415 consensus 93.9 0.55 1.4E-05 26.3 9.8 109 6-139 1-113 (197)
22 PRK00032 Maf-like protein; Rev 93.9 0.55 1.4E-05 26.3 9.8 106 6-138 1-112 (189)
23 PRK02676 consensus 92.9 0.79 2E-05 25.4 10.0 108 5-137 1-112 (196)
24 PRK00078 Maf-like protein; Rev 91.9 0.94 2.4E-05 25.0 7.0 107 7-138 1-113 (192)
25 PRK01526 Maf-like protein; Rev 91.5 1.2 3.1E-05 24.4 11.0 115 6-146 7-127 (205)
26 PRK03442 consensus 90.4 1.5 3.9E-05 23.8 8.5 70 6-80 1-85 (213)
27 PRK00238 consensus 90.3 1.5 3.9E-05 23.7 9.0 109 6-139 1-115 (198)
28 PRK03797 consensus 89.2 1.9 4.8E-05 23.2 7.8 108 9-143 2-111 (186)
29 PRK01170 phosphopantetheine ad 85.9 2 5.2E-05 23.0 5.1 79 2-81 146-226 (328)
30 pfam11576 DUF3236 Protein of u 83.2 2 5.1E-05 23.1 4.1 59 6-68 35-93 (154)
31 PRK05074 NTPase; Reviewed 82.7 2.9 7.4E-05 22.1 4.8 60 4-65 1-67 (174)
32 PRK03114 NTPase; Reviewed 80.7 3.7 9.5E-05 21.5 4.8 55 7-65 1-58 (170)
33 pfam02545 Maf Maf-like protein 79.8 5.3 0.00013 20.6 7.6 114 7-148 1-122 (193)
34 cd00555 Maf Nucleotide binding 79.5 5.4 0.00014 20.6 8.7 111 9-146 1-117 (180)
35 PRK01839 Maf-like protein; Rev 79.3 5.5 0.00014 20.5 7.2 111 4-141 7-133 (209)
36 COG4019 Uncharacterized protei 76.1 4 0.0001 21.3 3.8 60 6-69 36-95 (156)
37 PRK04694 Maf-like protein; Rev 75.3 7.1 0.00018 19.9 9.3 108 9-143 2-118 (190)
38 PRK02141 Maf-like protein; Rev 75.2 7.2 0.00018 19.8 9.4 68 6-80 8-85 (206)
39 COG1986 Inosine/xanthosine tri 74.9 7.3 0.00019 19.8 5.5 61 6-66 1-64 (175)
40 TIGR00505 ribA GTP cyclohydrol 69.6 3 7.6E-05 22.0 1.9 22 4-25 163-184 (227)
41 TIGR02317 prpB methylisocitrat 67.9 4.3 0.00011 21.1 2.4 36 41-77 49-85 (287)
42 PRK04056 Maf-like protein; Rev 62.6 13 0.00034 18.2 9.5 105 9-138 2-110 (180)
43 PRK00091 miaA tRNA delta(2)-is 62.5 14 0.00035 18.2 6.0 82 4-85 1-113 (304)
44 PTZ00215 ribose 5-phosphate is 62.1 14 0.00035 18.2 6.0 83 5-92 1-89 (156)
45 PRK02910 light-independent pro 60.2 10 0.00025 19.0 3.1 79 10-88 168-260 (524)
46 PRK03941 NTPase; Reviewed 56.0 18 0.00045 17.6 6.1 57 7-64 1-60 (174)
47 TIGR01278 DPOR_BchB light-inde 55.8 11 0.00027 18.8 2.7 63 11-73 174-244 (562)
48 PRK03098 consensus 54.7 18 0.00047 17.4 7.8 95 23-143 10-111 (185)
49 TIGR02665 molyb_mobA molybdopt 48.9 7.3 0.00019 19.8 0.9 28 59-90 53-80 (202)
50 TIGR02546 III_secr_ATP type II 47.5 7.1 0.00018 19.8 0.7 75 125-221 298-377 (430)
51 pfam01715 IPPT IPP transferase 45.8 19 0.00048 17.4 2.6 40 46-85 36-76 (253)
52 PRK06548 ribonuclease H; Provi 45.7 26 0.00066 16.6 3.9 73 4-84 1-79 (161)
53 KOG0971 consensus 44.8 16 0.00041 17.8 2.1 13 204-216 936-948 (1243)
54 CHL00076 chlB photochlorophyll 43.7 28 0.00071 16.4 3.4 78 10-87 173-264 (510)
55 cd07301 PX_SNX21 The phosphoin 41.0 15 0.00039 17.9 1.6 32 192-223 67-98 (112)
56 PRK09319 bifunctional 3,4-dihy 40.1 32 0.00081 16.1 4.8 50 5-59 349-398 (552)
57 TIGR00576 dut dUTP diphosphata 37.5 35 0.00089 15.8 3.1 83 70-164 61-147 (151)
58 PRK12613 galactose-6-phosphate 36.1 37 0.00094 15.7 5.8 77 7-91 1-81 (141)
59 pfam10087 DUF2325 Uncharacteri 36.0 37 0.00094 15.7 4.7 71 8-78 1-85 (96)
60 pfam11329 DUF3131 Protein of u 35.6 37 0.00095 15.7 3.7 25 161-186 304-328 (368)
61 TIGR03474 incFII_RepA incFII f 35.6 29 0.00073 16.3 2.2 17 71-87 89-105 (275)
62 KOG0125 consensus 32.0 21 0.00052 17.2 1.0 21 10-30 99-121 (376)
63 cd07300 PX_SNX20 The phosphoin 30.4 31 0.00078 16.2 1.7 23 200-222 75-97 (114)
64 pfam09826 Beta_propel Beta pro 30.2 39 0.001 15.5 2.2 14 142-155 262-275 (521)
65 TIGR01452 PGP_euk phosphoglyco 27.4 40 0.001 15.5 1.8 30 4-33 32-62 (288)
66 pfam05783 DLIC Dynein light in 27.4 27 0.00069 16.5 1.0 11 165-175 296-306 (490)
67 COG4766 EutQ Ethanolamine util 26.0 55 0.0014 14.7 2.6 50 126-181 109-159 (176)
68 COG1157 FliI Flagellar biosynt 25.3 57 0.0014 14.6 4.7 60 125-186 308-370 (441)
69 PRK05571 ribose-5-phosphate is 25.1 57 0.0015 14.6 6.7 82 7-92 1-86 (149)
70 pfam05841 Apc15p Apc15p protei 25.1 36 0.00092 15.7 1.3 51 12-62 23-75 (151)
71 COG0647 NagD Predicted sugar p 24.6 48 0.0012 15.1 1.8 26 5-30 39-65 (269)
72 TIGR02429 pcaI_scoA_fam 3-oxoa 24.4 37 0.00094 15.7 1.2 34 146-181 93-133 (222)
73 COG2984 ABC-type uncharacteriz 24.3 59 0.0015 14.5 3.7 63 18-80 176-252 (322)
74 COG2513 PrpB PEP phosphonomuta 23.8 60 0.0015 14.4 3.4 57 25-83 33-94 (289)
75 PRK13750 replication protein; 23.8 55 0.0014 14.7 2.0 13 51-63 30-42 (285)
76 pfam09117 MiAMP1 MiAMP1. MiAMP 23.6 36 0.00092 15.7 1.0 14 158-171 65-78 (79)
77 pfam02502 LacAB_rpiB Ribose/Ga 22.5 64 0.0016 14.3 6.0 80 8-92 1-84 (140)
78 cd07279 PX_SNX20_21_like The p 22.2 54 0.0014 14.7 1.7 21 202-222 77-97 (112)
79 TIGR00959 ffh signal recogniti 21.8 15 0.00039 17.9 -1.1 104 43-172 163-295 (439)
80 PRK12462 phosphoserine aminotr 21.4 49 0.0012 15.0 1.3 17 10-26 98-116 (364)
81 TIGR01088 aroQ 3-dehydroquinat 21.2 68 0.0017 14.1 2.6 49 140-217 44-92 (144)
82 cd00377 ICL_PEPM Members of th 21.1 69 0.0017 14.1 3.3 51 26-77 25-80 (243)
83 cd06867 PX_SNX41_42 The phosph 21.0 64 0.0016 14.3 1.9 19 203-221 78-96 (112)
84 KOG3135 consensus 20.2 51 0.0013 14.9 1.2 54 29-86 24-78 (203)
No 1
>PRK00120 putative deoxyribonucleotide triphosphate pyrophosphatase; Reviewed
Probab=100.00 E-value=0 Score=468.84 Aligned_cols=197 Identities=49% Similarity=0.806 Sum_probs=182.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHC
Q ss_conf 67779998499227999999730079199724447885666676554567787653311345630785201243434201
Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDG 84 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G 84 (224)
||++|+|||+|+||++|++++|.+++++++++.++++++|+|+|.||+|||++||++++++++.|||||||||||+||||
T Consensus 1 Mm~ki~~aT~N~~K~~E~~~il~~~~~~i~~~~d~~~~e~~E~g~t~~eNA~~KA~~~~~~~~~pvlaDDSGL~i~aL~g 80 (197)
T PRK00120 1 MMKKLVLASHNAGKLRELAALLAPFGLEVVSQGELGLPEPEETGLTFVENALIKARHAAKATGLPALADDSGLAVDALGG 80 (197)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEEEHHHCC
T ss_conf 98639999298679999999887659889757886999988889779999999999999874897797146799833149
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 44514344304578868889999998877752135677765068998620132342104564333249982641178857
Q gi|254780629|r 85 KPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFG 164 (224)
Q Consensus 85 ~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~GFG 164 (224)
+||||||||++...++.+. ++++++.|... ..++|+|+|+||+|+++|++++++|+|+|+|+|+.+|||++|||
T Consensus 81 ~PGvySar~ag~~~~d~~~---~~~ll~~l~~~---~~~~r~A~f~~~i~~~~~~~~~~~f~G~~~G~I~~~~rG~~GFG 154 (197)
T PRK00120 81 APGVYSARYAGEHGNDAAN---NEKLLEELRDV---PDEDRSARFVCVLVLAWPDGHPLVAEGEWEGTIVWEPRGEGGFG 154 (197)
T ss_pred CCCCCEEEHHHHCCCHHHH---HHHHHHHHHCC---CCCCCEEEEEEEEEEEECCCEEEEEEEEEEEEEEECCCCCCCCC
T ss_conf 9983111044427889999---99999997568---85554499999999995798189997178899976661799989
Q ss_pred CCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2313665699847776898785012123222332334352589999999999998764
Q gi|254780629|r 165 YDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRID 222 (224)
Q Consensus 165 yDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~~ 222 (224)
|||||+|+|+++|||||+.+|||+ ||||++|+++|+++|+++.
T Consensus 155 yDpIF~p~g~~kTfaEm~~~eKn~---------------iSHR~~A~~kl~~~L~~l~ 197 (197)
T PRK00120 155 YDPLFFPPGYGKTFAELTPEEKNA---------------ISHRARALKKLLEALLNLA 197 (197)
T ss_pred CCCEEEECCCCCCHHCCCHHHHHH---------------HCHHHHHHHHHHHHHHHHC
T ss_conf 883188899997452399899766---------------4989999999999998329
No 2
>PRK02491 putative deoxyribonucleotide triphosphate pyrophosphatase/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=0 Score=459.84 Aligned_cols=197 Identities=36% Similarity=0.497 Sum_probs=180.6
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHC-CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 67779998499227999999730079199724447-88566667655456778765331134563078520124343420
Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGIMTTSALEL-NLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLD 83 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~-~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~ 83 (224)
.-.+|+|||+|+||++|++++|.++|+++.++.++ ++++|+|+|.||+|||++||+++++.+|.|||||||||+||||+
T Consensus 126 ~~dtilIAT~N~GK~kEf~~l~~~~g~~V~sL~D~pdlPEVeETG~TFeENA~lKA~~~ak~tG~pvLADDSGL~VDAL~ 205 (328)
T PRK02491 126 FGDTILIATRNEGKTKEFRKLFGKLGYKVENLNDYPDLPEVAETGMTFEENARLKAETISRLTGKMVLADDSGLKVDALG 205 (328)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECC
T ss_conf 58779998379656999999887549589788778999997787768899999999999998799689627761881048
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCC
Q ss_conf 14451434430457886888999999887775213567776506899862013234210456433324998264117885
Q gi|254780629|r 84 GKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGF 163 (224)
Q Consensus 84 G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~GF 163 (224)
|.||||||||||+..+++. ++++++..|... ....+|+|+|+|++|+++|+++..+++|.|+|.|+.+|||++||
T Consensus 206 G~PGIySARyAG~~a~D~~---N~~KLL~eL~~v--~~~~~RsArFvCvLvla~pdg~~~~~eG~~eG~I~~eprG~nGF 280 (328)
T PRK02491 206 GLPGVWSARFSGPDATDAE---NNAKLLHELAMV--FDQKDRSAQFHTTLVVAAPNKDSLVVEADWPGYIATEPKGENGF 280 (328)
T ss_pred CCCCCCEEEECCCCCCHHH---HHHHHHHHHHCC--CCCCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCC
T ss_conf 9987223341589999999---999999986536--88777508999999999879997999999999994787789977
Q ss_pred CCCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 7231366569984777689878501212322233233435258999999999999876
Q gi|254780629|r 164 GYDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRI 221 (224)
Q Consensus 164 GyDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~ 221 (224)
||||||+|+++++|||||+.+|||+ ||||++|++||++.+-+-
T Consensus 281 GYDPIF~p~~~~kTfAELs~eeKN~---------------ISHRgkAlrkLlE~fp~W 323 (328)
T PRK02491 281 GYDPLFLVGETGRTAAELTAEEKNQ---------------LSHRGQAVKKLMEVFPAW 323 (328)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHH---------------CCHHHHHHHHHHHHHHHH
T ss_conf 9597588799995143799789465---------------392999999999983986
No 3
>TIGR00042 TIGR00042 non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; InterPro: IPR002637 This family contains the Saccharomyces cerevisiae HAM1 protein P47119 from SWISSPROT and other hypothetical archaeal, bacterial and Caenorhabditis elegans proteins. Saccharomyces cerevisiae HAM1 protects against the mutagenic effects of the base analog 6-N-hydroxylaminopurine (HAP) which can be a natural product of monooxygenase activity on adenine. HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions .; GO: 0016787 hydrolase activity.
Probab=100.00 E-value=0 Score=463.24 Aligned_cols=194 Identities=42% Similarity=0.637 Sum_probs=176.5
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCC-CCCCCCCCCCHHHHHHHHHHHHCCCCC--CEEEEECHHHHHHHH
Q ss_conf 799984992279999997300791--997244478-856666765545677876533113456--307852012434342
Q gi|254780629|r 8 NIVIASHNVDKIHEMDSLIMPLGI--MTTSALELN-LIIPEETGNSFEENAMIKSLTAAKNAG--MPALSDDSGLVIDVL 82 (224)
Q Consensus 8 kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~-~~~peE~g~tf~eNA~~KA~~~~~~~~--~pvlaDDSGL~vdaL 82 (224)
+|+|||+|+||++|++.||.+++. .++.+.++. +++|||||.||+|||+.||+++++.++ .|||||||||+||||
T Consensus 1 ~~~faTgN~gK~~E~~~iL~~~g~nn~~~~~~~~~~~d~~EetG~Tf~EnA~lkA~~~~~~~~~~~~vi~eDSGL~v~aL 80 (205)
T TIGR00042 1 KIVFATGNPGKLKEVKEILSDLGLNNNEIAQLDLGAVDYIEETGSTFEENALLKAKAAAKILNKGKPVIAEDSGLFVDAL 80 (205)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCEEEEEC
T ss_conf 86898738038999999731218860144201356413533589868999989799999998179809998452000002
Q ss_pred HCCCCHHHHHHHCCCCCH--HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCC--EEEEEEEEEEEEEECCC
Q ss_conf 014451434430457886--88899999988777521356777650689986201323421--04564333249982641
Q gi|254780629|r 83 DGKPGIHSARWAESNTGE--RDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGH--VENFSGKVSGIIVWPPR 158 (224)
Q Consensus 83 ~G~PGvySaR~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~--~~~f~G~~~G~I~~~pr 158 (224)
||+||+|||||.++.... .++..++++|+++|... ..++|.|+|+||||++.|+++ +.+|+|+|+|+|+.+||
T Consensus 81 ~G~PG~YSary~~eklCkk~~TD~~N~ekiL~~le~~---~~e~R~A~F~~~i~~~~~~~~P~~~~f~G~~~G~I~~e~r 157 (205)
T TIGR00042 81 NGAPGIYSARYAGEKLCKKESTDIKNLEKILKLLEGV---EKENRQAYFVCVISYADPNGEPIPLVFEGIVKGKIAEEPR 157 (205)
T ss_pred CCCCCCEEEEECCCEEECCCCCHHHHHHHHHHHHCCC---CCCCCCEEEEEEEEEEECCCCCCEEEEEEEEEEEEECCCC
T ss_conf 7998963500046110111364045799999984797---3315612999999997249997268887688657723668
Q ss_pred C--CCCCCCCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1--788572313665699847776898785012123222332334352589999999999998
Q gi|254780629|r 159 G--QLGFGYDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCL 219 (224)
Q Consensus 159 G--~~GFGyDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~ 219 (224)
| +.||||||||+|++.+||||||+.+|||+ ||||++||++|.+||.
T Consensus 158 GKk~~GFGYDpIF~~~~~~kTfAElt~~EKn~---------------iSHR~kAf~~f~~~L~ 205 (205)
T TIGR00042 158 GKKTYGFGYDPIFLPPEEGKTFAELTTEEKNK---------------ISHRGKAFKKFKKFLL 205 (205)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC---------------CCHHHHHHHHHHHHCC
T ss_conf 88988840233444389894466630775310---------------4748999999998529
No 4
>COG0127 Xanthosine triphosphate pyrophosphatase [Nucleotide transport and metabolism]
Probab=100.00 E-value=0 Score=435.28 Aligned_cols=192 Identities=45% Similarity=0.680 Sum_probs=175.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCC-CCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHC
Q ss_conf 7779998499227999999730079199724447885-666676554567787653311345630785201243434201
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLI-IPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDG 84 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~-~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G 84 (224)
|++|+|||+|+||++|++.+|.+.++++.++.+.... +|+|+|.||.|||..||+.+++.++.|||||||||||+||||
T Consensus 1 ~~ki~~AT~N~~K~~E~~~il~~~~~ei~~~~~~~~~~e~eEtg~tf~enA~~Ka~~~a~~~g~pviaDDSGL~v~aL~G 80 (194)
T COG0127 1 MMKIVLATGNKGKLRELKSILAPGGIEIESLKELGVEIEVEETGLTFEENALLKARAAAKATGLPVIADDSGLCVDALNG 80 (194)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCC
T ss_conf 94799985986779999998550483368724457878800045689999999999997403995899658347711379
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCC
Q ss_conf 44514344304578868889999998877752135677765068998620132342104564333249982641178857
Q gi|254780629|r 85 KPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFG 164 (224)
Q Consensus 85 ~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~GFG 164 (224)
+||||||||++. . ++...++++++.|... .+|+|+|+|+++++++++.+.+|+|+|+|+|+.+|||++|||
T Consensus 81 ~PGvYSar~~~~-~---~d~~~~~klL~~l~~~-----~~R~A~F~~vi~~~~~~~~~~~f~G~v~G~I~~~prG~~GFG 151 (194)
T COG0127 81 FPGVYSARFAGE-A---DDTIGNEKLLKLLEGV-----PDRSAYFVCVIVLARDGGEPIVFEGEVEGEIAREPRGEGGFG 151 (194)
T ss_pred CCCCEEEHHCCC-C---CHHHHHHHHHHHHCCC-----CCCEEEEEEEEEEEECCCCEEEEEEEEEEEEECCCCCCCCCC
T ss_conf 984022011146-7---6134399999983478-----777089999999980899479999999889954777889968
Q ss_pred CCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 231366569984777689878501212322233233435258999999999999876
Q gi|254780629|r 165 YDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRI 221 (224)
Q Consensus 165 yDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~ 221 (224)
|||||+|+|+++|||||+.+|||+ ||||++|+++|.++|.+.
T Consensus 152 YDpIF~~~~~~~T~AEm~~eeKn~---------------iSHR~~A~~kl~~~l~~~ 193 (194)
T COG0127 152 YDPIFIPEGYGKTFAELSTEEKNA---------------ISHRARALKKLKEYLAEN 193 (194)
T ss_pred CCCCCCCCCCCCCHHHCCHHHHHH---------------HHHHHHHHHHHHHHHHHC
T ss_conf 786234699997456599878742---------------248999999999999851
No 5
>pfam01725 Ham1p_like Ham1 family. This family consists of the HAM1 protein and hypothetical archaeal bacterial and C. elegans proteins. HAM1 controls 6-N-hydroxylaminopurine (HAP) sensitivity and mutagenesis in S. cerevisiae HAM1. The HAM1 protein protects the cell from HAP, either on the level of deoxynucleoside triphosphate or the DNA level by a yet unidentified set of reactions.
Probab=100.00 E-value=0 Score=420.77 Aligned_cols=181 Identities=47% Similarity=0.718 Sum_probs=165.0
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCH
Q ss_conf 99984992279999997300791997244478856666765545677876533113456307852012434342014451
Q gi|254780629|r 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDGKPGI 88 (224)
Q Consensus 9 ii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G~PGv 88 (224)
|+|||+|+||++|++++|.+++++++++.+.++ +|+|++.||+|||++||++++++++.|||||||||||+||||+|||
T Consensus 1 I~~aT~N~~K~~E~~~~l~~~~i~~~~l~~~~~-~~~E~~~t~~enA~~Ka~~~~~~~~~p~iaDDSGL~i~aL~g~PGi 79 (181)
T pfam01725 1 IVFATGNKGKLKEIKAILGDLGIEVIDLKHDPI-EVEETGDTFEENALLKAKAAAKALGKPVLADDSGLCVDALNGFPGV 79 (181)
T ss_pred CEEECCCHHHHHHHHHHHHHCCCEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCH
T ss_conf 999948888999999988564965874112688-9888888999999999999999708977982406789987599731
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEE
Q ss_conf 43443045788688899999988777521356777650689986201323421045643332499826411788572313
Q gi|254780629|r 89 HSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPI 168 (224)
Q Consensus 89 ySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~GFGyDpI 168 (224)
|||||+... ..+++++.+.. .++|+|+|+|++|++++++++++|+|+|+|+|+.+|||++|||||||
T Consensus 80 ~sar~~~~~--------~~~~ll~~l~~-----~~~r~A~f~~~l~~~~~~~~~~~f~G~~~G~I~~~~rG~~GfGyDpI 146 (181)
T pfam01725 80 YSARFADTL--------NNEKLLELLEG-----VEDRSAYFVCVIALADPDGKVLVFEGIVEGEIVEEPRGEGGFGYDPI 146 (181)
T ss_pred HHHHHHHHH--------HHHHHHHHHCC-----CCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCCCCCCCCCE
T ss_conf 409998760--------07789998079-----98875999999999938995899998888999866628999898717
Q ss_pred EEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 66569984777689878501212322233233435258999999999999
Q gi|254780629|r 169 FQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNC 218 (224)
Q Consensus 169 F~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l 218 (224)
|+|+|+++|||||+.+|||+ ||||++|+++|++||
T Consensus 147 F~p~g~~kT~aEm~~~eKn~---------------iSHR~~A~~kl~~~L 181 (181)
T pfam01725 147 FIPPGYGKTFAEMSEEEKNK---------------ISHRGKALRKLKEFL 181 (181)
T ss_pred EEECCCCCCHHCCCHHHHHH---------------HCHHHHHHHHHHHHC
T ss_conf 99899996441499899765---------------098999999999669
No 6
>cd00515 HAM1 NTPase/HAM1. This family consists of the HAM1 protein and pyrophosphate-releasing xanthosine/ inosine triphosphatase. HAM1 protects the cell against mutagenesis by the base analog 6-N-hydroxylaminopurine (HAP) in E. Coli and S. cerevisiae. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides such as XTP to XMP and ITP to IMP, but not the standard nucleotides, in the presence of Mg or Mn ions. The enzyme exists as a homodimer. The HAM1 protein may be acting as an NTPase by hydrolyzing the HAP triphosphate.
Probab=100.00 E-value=0 Score=421.02 Aligned_cols=183 Identities=45% Similarity=0.740 Sum_probs=165.6
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCCCH
Q ss_conf 99984992279999997300791997244478856666765545677876533113456307852012434342014451
Q gi|254780629|r 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLDGKPGI 88 (224)
Q Consensus 9 ii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~G~PGv 88 (224)
|+|||+|+||++|++.+|.+++++++++.+ ..+|+|++.||+|||++||++++++++.|||||||||||+||||+|||
T Consensus 1 i~~aT~N~~K~~E~~~~l~~~~i~i~~~~~--~~~~~E~~~t~~enA~~Ka~~~~~~~~~~~iaDDSGL~v~aL~g~PGv 78 (183)
T cd00515 1 IVFATGNKGKLKEFKEILAPFGIEVVSLKD--IIDIEETGSTFEENALLKARAAAEALGLPVLADDSGLCVDALNGFPGV 78 (183)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCC
T ss_conf 999908878999999988554977985465--789988888999999999999999838986984204579987599972
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEE
Q ss_conf 43443045788688899999988777521356777650689986201323421045643332499826411788572313
Q gi|254780629|r 89 HSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPI 168 (224)
Q Consensus 89 ySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~GFGyDpI 168 (224)
|||||+++. ++. ..++++++.+.. .++|+|+|+|++|++++++.+.+|+|+|+|+|+.+|||++|||||||
T Consensus 79 ysar~~~~~-~d~---~~~~~ll~~l~~-----~~~r~A~f~~~l~~~~~~~~~~~f~G~~~G~I~~~~rG~~GfGyDpI 149 (183)
T cd00515 79 YSARFAGEH-DDA---ENNEKLLELLEG-----DEDRSAYFVCVIALVDPDGEPLVFEGEVEGKIVTEPRGTGGFGYDPI 149 (183)
T ss_pred HHHHHHCCC-CHH---HHHHHHHHHHCC-----CCCCEEEEEEEEEEEECCCCEEEEEEEEEEEEEECCCCCCCCCCCCE
T ss_conf 127775447-879---999999997155-----45753999999999956995899998887999866637999898835
Q ss_pred EEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6656998477768987850121232223323343525899999999999
Q gi|254780629|r 169 FQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDN 217 (224)
Q Consensus 169 F~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~ 217 (224)
|+|+|+++|||||+.+|||+ +|||++|++||++|
T Consensus 150 F~p~g~~kT~aEm~~~eKn~---------------iSHR~~A~~kl~~~ 183 (183)
T cd00515 150 FIPEGYGKTFAEMSPEEKNA---------------ISHRGKALRKLKEF 183 (183)
T ss_pred EEECCCCCCCCCCCHHHHHH---------------HCHHHHHHHHHHCC
T ss_conf 99899996530399889555---------------09899999998539
No 7
>KOG3222 consensus
Probab=100.00 E-value=0 Score=299.96 Aligned_cols=188 Identities=32% Similarity=0.536 Sum_probs=163.9
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHH
Q ss_conf 56777999849922799999973007919972444788566667655456778765331134563078520124343420
Q gi|254780629|r 4 LIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVLD 83 (224)
Q Consensus 4 ~~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL~ 83 (224)
+|.++|+|+|+|.+|++|++.||.+.-.. ..+...+++.||.|| +.+++|..|.+.+....+.|||+|||.||.+||+
T Consensus 2 ~~~r~i~FvTgN~kKLeeV~~il~~~~~~-~~l~~~~ldl~EiQg-s~eeI~~~Kck~a~~~v~GpVlVeDT~l~f~al~ 79 (195)
T KOG3222 2 VMSREINFVTGNAKKLEEVRAILGDSFPY-CTLINIDLDLPEIQG-SPEEIAIEKCKVAAEIVKGPVLVEDTSLCFNALG 79 (195)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHCCCCCH-HHHHHHCCCCHHHCC-CHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHCC
T ss_conf 66651589837688899999996245403-556542368158648-9899999986888885168878850345565405
Q ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC-C-EEEEEEEEEEEEEECCCCCC
Q ss_conf 144514344304578868889999998877752135677765068998620132342-1-04564333249982641178
Q gi|254780629|r 84 GKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDG-H-VENFSGKVSGIIVWPPRGQL 161 (224)
Q Consensus 84 G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~-~-~~~f~G~~~G~I~~~prG~~ 161 (224)
|+||+| ++|+...+|.++...++... ++.+|+..|+++++...+ + +++|.|+++|+|+ +|||..
T Consensus 80 GlPGpY-iKwFLk~lg~egl~~~l~~~------------~~k~A~A~c~f~~~~g~g~~p~~~F~G~~~G~IV-p~rG~~ 145 (195)
T KOG3222 80 GLPGPY-IKWFLKKLGPEGLHEMLSKF------------ENKSAYALCTFGYADGRGAKPVHTFAGETEGSIV-PPRGPT 145 (195)
T ss_pred CCCCHH-HHHHHHHHCCHHHHHHHHHH------------CCCCEEEEEEEEEECCCCCCEEEEEECCCCCEEC-CCCCCC
T ss_conf 998379-99999980818799998860------------7864378999999748997046887212175074-788988
Q ss_pred CCCCCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 8572313665699847776898785012123222332334352589999999999998764
Q gi|254780629|r 162 GFGYDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRID 222 (224)
Q Consensus 162 GFGyDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~~ 222 (224)
+|||||||.|+|+++|||||+.+|||. ||||.||+.+|.++|.+++
T Consensus 146 ~fGwd~iFqP~g~~~tyaEMpk~ekN~---------------iSHRy~A~~klk~yl~~~g 191 (195)
T KOG3222 146 DFGWDPIFQPDGYEQTYAEMPKDEKNA---------------ISHRYRALAKLKEYLAENG 191 (195)
T ss_pred CCCCCCCCCCCCCCCCHHHCCHHHHHH---------------HHHHHHHHHHHHHHHHHCC
T ss_conf 778774458785311064478667510---------------3188999999999998627
No 8
>cd00985 Maf_Ham1 Maf_Ham1. Maf, a nucleotide binding protein, has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea. A Ham1-related protein from Methanococcus jannaschii is a novel NTPase that has been shown to hydrolyze nonstandard nucleotides, such as hypoxanthine/xanthine NTP, but not standard nucleotides.
Probab=99.73 E-value=1.4e-17 Score=122.83 Aligned_cols=121 Identities=28% Similarity=0.531 Sum_probs=95.2
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEHHHCC-CCCCCCCCCCHHHHHHHHHHHHCCCCC-CEEEEECHHHHHHHHHCCC
Q ss_conf 99984992279999997300791997244478-856666765545677876533113456-3078520124343420144
Q gi|254780629|r 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELN-LIIPEETGNSFEENAMIKSLTAAKNAG-MPALSDDSGLVIDVLDGKP 86 (224)
Q Consensus 9 ii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~-~~~peE~g~tf~eNA~~KA~~~~~~~~-~pvlaDDSGL~vdaL~G~P 86 (224)
|+|||+|++|.++++.++. .++.+++. +++ ...+.|...++.+||..||+.+++... .+||++||+++++ |.|
T Consensus 1 iiLAS~S~~R~~~l~~~~~-~~~~~~~~-~idE~~~~~~~~~~~~~~A~~KA~~v~~~~~~~~vi~~DT~v~~~---g~i 75 (131)
T cd00985 1 LILASGSPRRLEELKQIGG-IEFEVLPS-DIDETGLKGEPEDTVEELALLKARAVAERLPDAPVIADDTGLVVD---GRP 75 (131)
T ss_pred CEEECCCHHHHHHHHHCCC-CCEEEECC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEC---CEE
T ss_conf 9996799899999996689-99599679-989888888989999999999998889777996599616368889---987
Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEE
Q ss_conf 5143443045788688899999988777521356777650689986201323421045643332499
Q gi|254780629|r 87 GIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGII 153 (224)
Q Consensus 87 GvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I 153 (224)
|.++++|... .. ++.. ...|+++|.|++|++++++.++.|.|.++|+|
T Consensus 76 ~~Kp~~~~~a----------~~-~L~~--------lsgr~h~~~t~v~l~~~~~~~~~~~~~~~~~i 123 (131)
T cd00985 76 GGKPARFAEA----------LE-MLRG--------LSGRTAEFVTAVALVDPDGKIITFEGETEGKI 123 (131)
T ss_pred CCCCCCHHHH----------HH-HHHH--------HCCCEEEEEEEEEEEECCCCEEEEEEEEEEEE
T ss_conf 3489999999----------99-8876--------15886999999999948998999999999999
No 9
>PRK04222 consensus
Probab=96.73 E-value=0.015 Score=35.36 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=60.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCC-CCCCCCCCH-HHHHHHHHHHHCCC-CCCEEEEECHHHHH
Q ss_conf 677799984992279999997300791--99724447885-666676554-56778765331134-56307852012434
Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLI-IPEETGNSF-EENAMIKSLTAAKN-AGMPALSDDSGLVI 79 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~-~peE~g~tf-~eNA~~KA~~~~~~-~~~pvlaDDSGL~v 79 (224)
||++|++||+-+--.+= |..+|+ ++++ .+++.. .+.|+...+ ...|..||+.++.. .+..||+-|+-+
T Consensus 1 mm~kiILAS~SprR~~l----L~~~gi~F~~~~-~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~VIgaDtvv-- 73 (191)
T PRK04222 1 MMPRLILASTSAYRREL----LGRLQLDFDTAR-PEVDEQALPGETPSALASRLAGEKAAAVAVRFPEAWVIGSDQVA-- 73 (191)
T ss_pred CCCCEEECCCCHHHHHH----HHHCCCCCEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEE--
T ss_conf 99878984799999999----997899809978-99998878999999999999999989889768986697145699--
Q ss_pred HHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf 342014451434430457886888999999887775213567776506899862013234210
Q gi|254780629|r 80 DVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHV 142 (224)
Q Consensus 80 daL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~ 142 (224)
.++|.. .++..+.+ .+.+.| ..|. .|+-++.|.+++..+++..
T Consensus 74 -~~~g~i-------lgKP~~~~---eA~~~L-~~Ls--------Gk~h~v~T~v~v~~~~~~~ 116 (191)
T PRK04222 74 -DLDGQA-------LGKPGTLE---QARAQL-TAMS--------GRTVRFHTAVSLIGPERAL 116 (191)
T ss_pred -EECCEE-------ECCCCCHH---HHHHHH-HHHC--------CCEEEEEEEEEEEECCCCE
T ss_conf -989999-------47999999---999999-9858--------9979999999999689868
No 10
>PRK00148 Maf-like protein; Reviewed
Probab=96.15 E-value=0.066 Score=31.70 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=58.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCC-CCCCC-CCHHHHHHHHHHHHCCC-CCCEEEEECHHHHHH
Q ss_conf 77799984992279999997300791--997244478856-66676-55456778765331134-563078520124343
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLII-PEETG-NSFEENAMIKSLTAAKN-AGMPALSDDSGLVID 80 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~-peE~g-~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~vd 80 (224)
|++|++||+-+...+ +|..+|+ .+++ .+++... +.+.. ..-..+|..||+.++.. .+..||+=|+-..
T Consensus 1 M~klILAS~Sp~R~~----lL~~~g~~f~v~~-~~idE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~iVI~aDtvv~-- 73 (195)
T PRK00148 1 MTRLVLASASPARLK----LLRLAGIPPLVVV-SHVDEDAIAASLPSELVQALALAKAEAVAEVAPDAVVLGCDSMLL-- 73 (195)
T ss_pred CCCEEECCCCHHHHH----HHHHCCCCEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEE--
T ss_conf 997898579999999----9997799849978-998989887789999999999999999998789977996435999--
Q ss_pred HHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 420144514344304578868889999998877752135677765068998620132342
Q gi|254780629|r 81 VLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDG 140 (224)
Q Consensus 81 aL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~ 140 (224)
++|. + .++..+.+ .+.+.| ..+ ..+..++.|.++++..++
T Consensus 74 -~~g~--i-----~gKP~~~~---eA~~~L-~~l--------sgk~H~v~Tgv~v~~~~~ 113 (195)
T PRK00148 74 -IDGR--L-----LGKPHTPE---EAIERW-QQM--------RGRTGELYTGHALIDLDQ 113 (195)
T ss_pred -ECCE--E-----ECCCCCHH---HHHHHH-HHH--------CCCCEEEEEEEEEEECCC
T ss_conf -8999--8-----35999999---999999-986--------699749998899998899
No 11
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=96.10 E-value=0.066 Score=31.68 Aligned_cols=112 Identities=20% Similarity=0.179 Sum_probs=66.5
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCC----CCCCCHHHHHHHHHHHHCCCC--CCEEEEECHHHH
Q ss_conf 67779998499227999999730079199724447885666----676554567787653311345--630785201243
Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPE----ETGNSFEENAMIKSLTAAKNA--GMPALSDDSGLV 78 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~pe----E~g~tf~eNA~~KA~~~~~~~--~~pvlaDDSGL~ 78 (224)
||.+|++||+-+--.+ +|.++++..... ..+++++. +.......-|..||+.++... +.+||+-||-++
T Consensus 1 ~~~~LiLAS~SPrR~e----lL~~~gi~f~~~-~~~iDE~~~~~~~P~~~v~~LA~~KA~~va~~~~~~~~VigaDtvv~ 75 (193)
T COG0424 1 MMPRLILASSSPRRRE----LLEQLGIPFEVI-PSDIDEPLLKAEEPREYVLRLAEEKARAVAARLPPDALVIGADTVVV 75 (193)
T ss_pred CCCCEEEECCCHHHHH----HHHHCCCCEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEE
T ss_conf 9862899469989999----999879981980-68999876657897999999999999999984799987996274999
Q ss_pred HHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEE
Q ss_conf 43420144514344304578868889999998877752135677765068998620132342104
Q gi|254780629|r 79 IDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVE 143 (224)
Q Consensus 79 vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~ 143 (224)
++. |-.++..+.+ .+.+.+ ..+ .-|...+.|.+|+..+++.++
T Consensus 76 ldg----------rilgKP~~~~---eA~~~L-~~l--------SG~~h~v~T~v~li~~~~~~~ 118 (193)
T COG0424 76 LDG----------RILGKPKDEE---EAREML-RKL--------SGRTHQVYTGVALIDPGKRVQ 118 (193)
T ss_pred ECC----------EEECCCCCHH---HHHHHH-HHH--------CCCEEEEEEEEEEEECCCEEE
T ss_conf 899----------9826999999---999999-984--------698699999999997797389
No 12
>PRK04719 consensus
Probab=95.63 E-value=0.19 Score=29.03 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=59.4
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCC----HHHHHHHHHHH-HCC-CCCCEEEEECHHH
Q ss_conf 56777999849922799999973007919972444788566667655----45677876533-113-4563078520124
Q gi|254780629|r 4 LIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNS----FEENAMIKSLT-AAK-NAGMPALSDDSGL 77 (224)
Q Consensus 4 ~~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~t----f~eNA~~KA~~-~~~-~~~~pvlaDDSGL 77 (224)
|.|.+|++||+-+--.+=++.+ .+.+++++. +++|....+.+ ....|..||+. +.. ..+.+||+-|+=+
T Consensus 1 ~~mm~iILAS~S~~R~~lL~~~--gi~f~~~~~---~iDE~~~~~~~p~~~v~~lA~~Ka~~~~~~~~~~~~VigaDtvv 75 (188)
T PRK04719 1 MKILKLVLASGSPRRKELLAQL--GYQFDVVLP---DVEECKQEHETAAQYVLRLSRDKAQAGLALVKATSVVLGSDTIV 75 (188)
T ss_pred CCCCCEEECCCCHHHHHHHHHC--CCCCEEECC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEE
T ss_conf 9868899907999999999877--999589789---99978788889999999999999999988628998899708799
Q ss_pred HHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 343420144514344304578868889999998877752135677765068998620132342
Q gi|254780629|r 78 VIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDG 140 (224)
Q Consensus 78 ~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~ 140 (224)
+ ++|. ..++..+.++ +.+.+ ..+. .++-.+.|.++++.++.
T Consensus 76 ~---~~g~-------i~gKP~~~~~---A~~~L-~~ls--------Gk~H~v~T~v~i~~~~~ 116 (188)
T PRK04719 76 V---CDGQ-------VLEKPKDFAD---AKRML-LKLS--------GRQHQVMTAVTVVSREK 116 (188)
T ss_pred E---ECCE-------EECCCCCHHH---HHHHH-HHHC--------CCCEEEEEEEEEEECCE
T ss_conf 9---8999-------9789889999---99999-9857--------99679999999998997
No 13
>PRK01441 Maf-like protein; Reviewed
Probab=95.11 E-value=0.28 Score=28.00 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=62.2
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCE--EEEHHHCCCC-CCCCCC-CCHHHHHHHHHHHHCCCC-------CCEEEEEC
Q ss_conf 777999849922799999973007919--9724447885-666676-554567787653311345-------63078520
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGIM--TTSALELNLI-IPEETG-NSFEENAMIKSLTAAKNA-------GMPALSDD 74 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i~--~~~~~~~~~~-~peE~g-~tf~eNA~~KA~~~~~~~-------~~pvlaDD 74 (224)
+++|++||+-+-- +.+|..+|+. .+.+.+++.. ...+.. ......|..||+.+.+.. +..||+-|
T Consensus 4 ~~riILAS~SprR----~~LL~~~gi~~~~v~p~~iDE~~~~~~~p~~~~~~la~~Ka~a~~~~~~~~~~~~~~~VIgaD 79 (207)
T PRK01441 4 RPKLVLASGSPRR----LELLNQAGIEPDRLRPADIDETPKRGEHPRSLARRLSRAKAEAALESLQGDDGLRGAFILAAD 79 (207)
T ss_pred CCCEEEECCCHHH----HHHHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC
T ss_conf 9959996899999----999986799816997699788888664989999999999999999870323347998899969
Q ss_pred HHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEE
Q ss_conf 124343420144514344304578868889999998877752135677765068998620132342104
Q gi|254780629|r 75 SGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVE 143 (224)
Q Consensus 75 SGL~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~ 143 (224)
+=+ .++|. ..++..+.+ .+.+.| ..+. .|+-.+.|.+|++.+++.++
T Consensus 80 Tvv---~~~g~-------ilgKP~~~~---~A~~~L-~~ls--------Gk~H~v~Tgv~l~~~~~~~~ 126 (207)
T PRK01441 80 TVV---AVGRR-------ILPKAELVD---EASQCL-RLLS--------GRNHRVYTGVCLVTPKGNLR 126 (207)
T ss_pred EEE---EECCE-------EECCCCCHH---HHHHHH-HHHC--------CCEEEEEEEEEEEECCCCEE
T ss_conf 299---97999-------947999999---999999-9975--------99179998999998997489
No 14
>PRK04425 Maf-like protein; Reviewed
Probab=94.69 E-value=0.37 Score=27.35 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=61.4
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCC-CCCCC-CCCHHHHHHHHHHHHCCC-CCCEEEEECHHHHHHH
Q ss_conf 67779998499227999999730079199724447885-66667-655456778765331134-5630785201243434
Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLI-IPEET-GNSFEENAMIKSLTAAKN-AGMPALSDDSGLVIDV 81 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~-~peE~-g~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~vda 81 (224)
|+.+|++||+-+--.+=++.+ .+..++++ .+++.. .+.|. .......|..||+.++.. .+..||+-|+-. +
T Consensus 3 ~~~~lILAS~SprR~~LL~~~--gi~f~v~~-~~idE~~~~~e~~~~~a~~lA~~KA~~v~~~~~~~iVIgaDtvv---~ 76 (196)
T PRK04425 3 LELPLVLGTSSVFRREQMERL--GIAFQAAS-PDFDETPMLGESAPQTALRLAEGKARSLTGRFPEALIVGADQVA---W 76 (196)
T ss_pred CCCCEEECCCCHHHHHHHHHC--CCCCEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEE---E
T ss_conf 988799858999999999878--99959976-99998999999989999999999999999758997798148499---9
Q ss_pred HHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCC-CCCEE
Q ss_conf 201445143443045788688899999988777521356777650689986201323-42104
Q gi|254780629|r 82 LDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWP-DGHVE 143 (224)
Q Consensus 82 L~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~-~~~~~ 143 (224)
++|.+ .++..+. +.+.+.| ..| ..++..+.|.+|+... ++.++
T Consensus 77 ~~g~i-------lgKP~~~---~eA~~~L-~~L--------sGk~H~v~T~v~v~~~~~~~~~ 120 (196)
T PRK04425 77 CDGRQ-------WGKPMNL---ANAQKML-MHL--------SGREIEFYSAVVLLNTVTGRMQ 120 (196)
T ss_pred ECCEE-------CCCCCCH---HHHHHHH-HHC--------CCCCEEEEEEEEEEECCCCCEE
T ss_conf 99998-------5899999---9999999-970--------7992999999999988998599
No 15
>PRK01946 consensus
Probab=94.64 E-value=0.27 Score=28.10 Aligned_cols=113 Identities=17% Similarity=0.164 Sum_probs=60.2
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHCCCE--EEEHHHCCCCCC-CCCC-CCHHHHHHHHHHHHCC--CCCCEEEEECH
Q ss_conf 6656777999849922799999973007919--972444788566-6676-5545677876533113--45630785201
Q gi|254780629|r 2 RKLIENNIVIASHNVDKIHEMDSLIMPLGIM--TTSALELNLIIP-EETG-NSFEENAMIKSLTAAK--NAGMPALSDDS 75 (224)
Q Consensus 2 ~~~~~~kii~aT~N~~K~~E~~~iL~~~~i~--~~~~~~~~~~~p-eE~g-~tf~eNA~~KA~~~~~--~~~~pvlaDDS 75 (224)
.+|.+.+|++||+-+.-.+ +|..+|+. +....+++...+ .++. ......|..||..+.. ..+..||+-|+
T Consensus 4 ~~l~~~~iILAS~Sp~R~~----lL~~~gi~f~v~~~~~~dE~~~~~~~~~~~~~~lA~~KA~~v~~~~~~~~lVI~aDt 79 (195)
T PRK01946 4 ENLKKYKIILASGSPRRKE----LLSGLGIDFEVRTLPDVDESYPDTLQREEIPLYLARLKAEAYRSMMKPNELLITADT 79 (195)
T ss_pred HHHCCCEEEEECCCHHHHH----HHHHCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECE
T ss_conf 7620897999789999999----999779997894389988888888898899999999999999972489988998473
Q ss_pred HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 24343420144514344304578868889999998877752135677765068998620132342
Q gi|254780629|r 76 GLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDG 140 (224)
Q Consensus 76 GL~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~ 140 (224)
-+. ++|. ..++..+. +.+.+.| ..+. .|+..+.|.+|+...+.
T Consensus 80 vv~---~~g~-------i~~KP~~~---~eA~~~L-~~ls--------Gk~h~v~T~v~v~~~~~ 122 (195)
T PRK01946 80 IVW---LDGK-------ALGKPKDR---EEAVEML-RSLS--------GKTHQVITGVCFTTKEK 122 (195)
T ss_pred EEE---ECCE-------EECCCCCH---HHHHHHH-HHHC--------CCCEEEEEEEEEEECCE
T ss_conf 998---8999-------97698999---9999999-9978--------99769999999998992
No 16
>PRK00648 Maf-like protein; Reviewed
Probab=94.53 E-value=0.23 Score=28.57 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=58.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCCC--CC-CCCCHHHHHHHHHHHHCCC--CCCEEEEECHHH
Q ss_conf 677799984992279999997300791--9972444788566--66-7655456778765331134--563078520124
Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLIIP--EE-TGNSFEENAMIKSLTAAKN--AGMPALSDDSGL 77 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~p--eE-~g~tf~eNA~~KA~~~~~~--~~~pvlaDDSGL 77 (224)
|+++|++||+-+--.+= |..+|+ ++++. +++...+ .+ ........|..||..++.. .+.+||+-|+=+
T Consensus 1 m~~~iILAS~S~~R~~l----L~~~gi~f~v~~~-~~dEe~~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~~~vI~aDtvv 75 (191)
T PRK00648 1 MKYKIVLASSSPRRKEI----LEGFRIPFEVIPS-PFVEESYPYSLDPEEYTLELARLKAEAVRSDHFPDELIITADTIV 75 (191)
T ss_pred CCCCEEEECCCHHHHHH----HHHCCCCCEEECC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEE
T ss_conf 99749996899999999----9977999599789-998776777899999999999999999997218998899968499
Q ss_pred HHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 34342014451434430457886888999999887775213567776506899862013234
Q gi|254780629|r 78 VIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPD 139 (224)
Q Consensus 78 ~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~ 139 (224)
. ++|. -.++..+. +.+.+. +..+. .|...+.|.+|++..+
T Consensus 76 ~---~~g~-------i~~KP~~~---~eA~~~-L~~ls--------Gk~h~v~T~v~v~~~~ 115 (191)
T PRK00648 76 W---YDGK-------VLGKPKSE---EEAIEM-LKTLS--------GKTHEVITGVCIIHNG 115 (191)
T ss_pred E---ECCE-------EECCCCCH---HHHHHH-HHHHC--------CCCCEEEEEEEEEECC
T ss_conf 9---8999-------96797659---999999-99978--------9960999999999899
No 17
>PRK03411 consensus
Probab=94.24 E-value=0.47 Score=26.75 Aligned_cols=104 Identities=20% Similarity=0.149 Sum_probs=57.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCCCCCCCCCH----HHHHHHHHHHHCCC-CCCEEEEECHHHH
Q ss_conf 77799984992279999997300791--99724447885666676554----56778765331134-5630785201243
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLIIPEETGNSF----EENAMIKSLTAAKN-AGMPALSDDSGLV 78 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~peE~g~tf----~eNA~~KA~~~~~~-~~~pvlaDDSGL~ 78 (224)
|++|++||+-+--.+ +|..+|+ ++++. ++ +|-.-.+.+. ...|..||+.++.. .+..||+-||-+.
T Consensus 1 M~~lILAS~SprR~~----lL~~~gi~f~~~~~-~i--DE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~VIgaDtvv~ 73 (194)
T PRK03411 1 MPQLILASTSPWRRA----LLEKLQIPFECAAP-EV--DETPRSGESPRQLVLRLAQAKAQSLASRYPQHLIIGSDQVCV 73 (194)
T ss_pred CCCEEECCCCHHHHH----HHHHCCCCCEEECC-CC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEE
T ss_conf 998898789999999----99878999689799-99--999899989999999999999999987589976654676999
Q ss_pred HHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 434201445143443045788688899999988777521356777650689986201323
Q gi|254780629|r 79 IDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWP 138 (224)
Q Consensus 79 vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~ 138 (224)
++|. ..++..+. +.+.+.| ..+. .+.-.+.|.+|+...
T Consensus 74 ---~~g~-------il~KP~~~---~eA~~~L-~~ls--------Gk~h~v~T~v~l~~~ 111 (194)
T PRK03411 74 ---LDGE-------ITGKPLTE---ENARKQL-RKAS--------GNIVTFYTGLALFNS 111 (194)
T ss_pred ---ECCE-------EECCCCCH---HHHHHHH-HHHC--------CCEEEEEEEEEEEEC
T ss_conf ---8999-------97682009---9999999-9876--------981999989999988
No 18
>PRK00884 Maf-like protein; Reviewed
Probab=94.23 E-value=0.41 Score=27.08 Aligned_cols=108 Identities=19% Similarity=0.144 Sum_probs=58.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCC-CCCCC-CCCHHHHHHHHHHHHCCC-CCCEEEEECHHHHHH
Q ss_conf 77799984992279999997300791--99724447885-66667-655456778765331134-563078520124343
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLI-IPEET-GNSFEENAMIKSLTAAKN-AGMPALSDDSGLVID 80 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~-~peE~-g~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~vd 80 (224)
|++|++||+-+--.+ +|..+|+ ++++. +++.. .+.++ ..--...|..||+.++.. .+..||+-||-+.
T Consensus 1 M~~iILAS~SprR~~----lL~~~gi~f~v~~~-~idE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~VigaDTvv~-- 73 (194)
T PRK00884 1 MPQLILASTSPYRRA----LLEKLQLPFECAAP-EVDETPRPGESPRQLVLRLAQEKAQSLASRYPDHLIIGSDQVCV-- 73 (194)
T ss_pred CCCEEECCCCHHHHH----HHHHCCCCCEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEE--
T ss_conf 998899789999999----99878999589799-99988888999999999999999998786589958984478999--
Q ss_pred HHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCC
Q ss_conf 420144514344304578868889999998877752135677765068998620132342
Q gi|254780629|r 81 VLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDG 140 (224)
Q Consensus 81 aL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~ 140 (224)
+||. ..++..+.+ .+.+.| ..+ ..++-.+.|.+|++.+..
T Consensus 74 -~~g~-------i~~KP~~~~---eA~~~L-~~l--------sGk~h~v~Tgv~v~~~~~ 113 (194)
T PRK00884 74 -LDGE-------ITGKPLTEE---NARLQL-RKA--------SGNIVTFYTGLALFNSAT 113 (194)
T ss_pred -ECCE-------EECCCCCHH---HHHHHH-HHH--------CCCEEEEEEEEEEEECCC
T ss_conf -8999-------846979999---999999-875--------798799998999998999
No 19
>PRK00234 Maf-like protein; Reviewed
Probab=94.22 E-value=0.47 Score=26.72 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=57.3
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCC-CCCCCCC-CHHHHHHHHHHHHCCC-CCCEEEEECHHHHHH
Q ss_conf 77799984992279999997300791--99724447885-6666765-5456778765331134-563078520124343
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLI-IPEETGN-SFEENAMIKSLTAAKN-AGMPALSDDSGLVID 80 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~-~peE~g~-tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~vd 80 (224)
|++|++||+-+--.+ +|..+|+ ++++ .+++.. .+.|+.. .....|..||+.++.. .+..||+-|+-++
T Consensus 1 M~~iILAS~SprR~~----lL~~~gi~f~v~~-~~idE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~VIgaDtvv~-- 73 (192)
T PRK00234 1 MPPLLLASSSPYRRE----LLARLRLPFTCAS-PDIDESHRPDESAEELVRRLARQKAEALAGSHPQHLIIGSDQVAV-- 73 (192)
T ss_pred CCCEEECCCCHHHHH----HHHHCCCCCEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEE--
T ss_conf 998898689999999----9997799949978-999888899989999999999999986476489867873586999--
Q ss_pred HHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 42014451434430457886888999999887775213567776506899862013234
Q gi|254780629|r 81 VLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPD 139 (224)
Q Consensus 81 aL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~ 139 (224)
++| +..++..+.+ .+.+.|.. +. .++-.+.|.+|+....
T Consensus 74 -~~g-------~il~KP~~~~---~A~~~L~~-ls--------Gk~h~v~Tgv~v~~~~ 112 (192)
T PRK00234 74 -LGE-------QILGKPHTFE---RACEQLLA-AS--------GQSVTFLTGLALLNSA 112 (192)
T ss_pred -ECC-------EEECCCCCHH---HHHHHHHH-HC--------CCEEEEEEEEEEEECC
T ss_conf -899-------9977999999---99999998-28--------9959999879999899
No 20
>PRK02478 Maf-like protein; Reviewed
Probab=93.94 E-value=0.54 Score=26.39 Aligned_cols=113 Identities=14% Similarity=0.164 Sum_probs=59.9
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCC----CCCCC----HHHHHHHHHHHHCCC-CCCEEEEECH
Q ss_conf 67779998499227999999730079199724447885666----67655----456778765331134-5630785201
Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPE----ETGNS----FEENAMIKSLTAAKN-AGMPALSDDS 75 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~pe----E~g~t----f~eNA~~KA~~~~~~-~~~pvlaDDS 75 (224)
|..+|++||+-+--.+=++++ .+..++++ .+++-...+ ..+.+ -...|..||+.++.. .+..||+-|+
T Consensus 1 mt~kiILAS~SprR~eLL~~~--gi~f~v~~-~diDE~~~~~~l~~~~~~p~~~~~~lA~~Ka~~v~~~~~~~lVI~aDt 77 (199)
T PRK02478 1 MTVKLILASKSPFRRALLKNA--GLEFSAAA-ADIDERAVEAPLEESGATPEDVALVLAEAKAIDVSEKFPGALVIGCDQ 77 (199)
T ss_pred CCCCEEEECCCHHHHHHHHHC--CCCEEEEC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCC
T ss_conf 998799737999999999978--99809963-799998554554447999999999999999999997589988973785
Q ss_pred HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCE
Q ss_conf 2434342014451434430457886888999999887775213567776506899862013234210
Q gi|254780629|r 76 GLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHV 142 (224)
Q Consensus 76 GL~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~ 142 (224)
-+ .++|.- .++..+ .+.+.+.| ..+. .+.-.+.|.+|++.++..+
T Consensus 78 vv---~~~g~i-------lgKP~~---~~eA~~mL-~~ls--------Gk~H~v~T~v~l~~~~~~~ 122 (199)
T PRK02478 78 TL---SLGDEV-------FHKPHD---MEAARRHL-QKLS--------GKTHQLNSAVVLVRDGKVL 122 (199)
T ss_pred EE---EECCEE-------CCCCCC---HHHHHHHH-HHHC--------CCEEEEEEEEEEEECCEEE
T ss_conf 89---989998-------269642---99999999-9976--------9839999899999899899
No 21
>PRK03415 consensus
Probab=93.90 E-value=0.55 Score=26.34 Aligned_cols=109 Identities=18% Similarity=0.222 Sum_probs=56.9
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCC-CCCCCCC-CHHHHHHHHHHHHC-CC-CCCEEEEECHHHHHHH
Q ss_conf 7779998499227999999730079199724447885-6666765-54567787653311-34-5630785201243434
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLI-IPEETGN-SFEENAMIKSLTAA-KN-AGMPALSDDSGLVIDV 81 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~-~peE~g~-tf~eNA~~KA~~~~-~~-~~~pvlaDDSGL~vda 81 (224)
|++|++||+-+--.+=++.+ .+..++++. +++.. .+.|+.. -....|..||+.+. .. .+.+||+-|+=++
T Consensus 1 M~~lILAS~S~~R~~lL~~~--gi~f~vi~~-~iDE~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~VIgaDTvv~--- 74 (197)
T PRK03415 1 MTSLYLASGSPRRQELLAQL--GVTFERLVT-GIEEQRQPQESAQQYVVRLAREKAQAGVAQAPQDLPVLGADTIVV--- 74 (197)
T ss_pred CCCEEECCCCHHHHHHHHHC--CCCCEEECC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEE---
T ss_conf 99889847999999999978--999689768-999998889999999999999999999852589988998681999---
Q ss_pred HHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 2014451434430457886888999999887775213567776506899862013234
Q gi|254780629|r 82 LDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPD 139 (224)
Q Consensus 82 L~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~ 139 (224)
++|.. .++..+.++ +.+.| ..+. .++-.+.|.+|++..+
T Consensus 75 ~~g~i-------l~KP~~~~e---A~~~L-~~ls--------G~~H~v~T~v~l~~~~ 113 (197)
T PRK03415 75 LNGEV-------LEKPRDAEH---AAQML-RALS--------GQTHQVMTAVALADSQ 113 (197)
T ss_pred ECCEE-------ECCCCCHHH---HHHHH-HHHC--------CCCEEEEEEEEEEECC
T ss_conf 89999-------689999999---99999-9976--------9952999999998299
No 22
>PRK00032 Maf-like protein; Reviewed
Probab=93.86 E-value=0.55 Score=26.31 Aligned_cols=106 Identities=21% Similarity=0.187 Sum_probs=56.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCH----HHHHHHHHHH-HCC-CCCCEEEEECHHHHH
Q ss_conf 7779998499227999999730079199724447885666676554----5677876533-113-456307852012434
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSF----EENAMIKSLT-AAK-NAGMPALSDDSGLVI 79 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf----~eNA~~KA~~-~~~-~~~~pvlaDDSGL~v 79 (224)
|++|++||+-+.-.+=++.+ .+..++++. +++|-.-.+.+. ..+|..||.. +.. ....+||+-|+-++
T Consensus 1 M~~lILAS~S~~R~~lL~~~--gi~f~~~~~---~idE~~~~~~~p~~~~~~lA~~KA~~~~~~~~~~~~VigaDtvv~- 74 (189)
T PRK00032 1 MTSLYLASGSPRRRELLAQL--GVPFEVLVT---GIEEQRQPQESAQQYVERLARDKAQAGVALVPQDLPVLGADTIVV- 74 (189)
T ss_pred CCCEEECCCCHHHHHHHHHC--CCCCEEECC---CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEE-
T ss_conf 99889847999999999878--998099739---999888899999999999999989999974499977995476999-
Q ss_pred HHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 34201445143443045788688899999988777521356777650689986201323
Q gi|254780629|r 80 DVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWP 138 (224)
Q Consensus 80 daL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~ 138 (224)
++|. -.++..+.+ .+.+.| ..+. .++-.+.|.++++.+
T Consensus 75 --~~g~-------i~~KP~~~~---eA~~~L-~~ls--------Gk~h~v~T~v~v~~~ 112 (189)
T PRK00032 75 --LDGE-------VLEKPRDAA---DAAAML-AALS--------GRTHQVMTAVALADS 112 (189)
T ss_pred --ECCE-------EECCCCCHH---HHHHHH-HHHC--------CCCEEEEEEEEEEEC
T ss_conf --9999-------977999999---999999-9858--------993899989999989
No 23
>PRK02676 consensus
Probab=92.93 E-value=0.79 Score=25.42 Aligned_cols=108 Identities=13% Similarity=0.067 Sum_probs=56.7
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCC-CC-CCCCHHHHHHHHHHHHCC--CCCCEEEEECHHHHHH
Q ss_conf 6777999849922799999973007919972444788566-66-765545677876533113--4563078520124343
Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIP-EE-TGNSFEENAMIKSLTAAK--NAGMPALSDDSGLVID 80 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~p-eE-~g~tf~eNA~~KA~~~~~--~~~~pvlaDDSGL~vd 80 (224)
|..+|++||+-+--.+=++++ .+...+++ .+++...+ .+ .......+|..||+.++. ..+..||+-|+-++
T Consensus 1 m~~~iILAS~SprR~~lL~~~--g~~f~v~~-~~idE~~~~~~~p~~~~~~lA~~KA~~va~~~~~~~~VI~aDTvv~-- 75 (196)
T PRK02676 1 MTPPFILASASPARRRLLQTV--GIDPIVQP-SHFDESQIQATDPVALVQTLAQAKAETVAASQFEPALVLGCDSVLA-- 75 (196)
T ss_pred CCCCEEEECCCHHHHHHHHHC--CCCEEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEE--
T ss_conf 999999947999999999977--99839978-9999888776899999999999999999874489979999087999--
Q ss_pred HHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCC
Q ss_conf 420144514344304578868889999998877752135677765068998620132
Q gi|254780629|r 81 VLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAW 137 (224)
Q Consensus 81 aL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~ 137 (224)
++|. -.++..+. +.+.+.| ..+. .+...+.|.+|++.
T Consensus 76 -~~g~-------ilgKP~~~---~eA~~~L-~~ls--------Gk~h~v~Tgv~li~ 112 (196)
T PRK02676 76 -IGGE-------IYGKPASP---AEAIARW-QQMR--------GQVGELYTGHALID 112 (196)
T ss_pred -ECCE-------EECCCCCH---HHHHHHH-HHHC--------CCCEEEEEEEEEEE
T ss_conf -8999-------97898999---9999999-8746--------99637988899998
No 24
>PRK00078 Maf-like protein; Reviewed
Probab=91.91 E-value=0.94 Score=24.96 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=56.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCC--CCCC-CHHHHHHHHHHHHCCCCC---CEEEEECHHHHHH
Q ss_conf 779998499227999999730079199724447885666--6765-545677876533113456---3078520124343
Q gi|254780629|r 7 NNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPE--ETGN-SFEENAMIKSLTAAKNAG---MPALSDDSGLVID 80 (224)
Q Consensus 7 ~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~pe--E~g~-tf~eNA~~KA~~~~~~~~---~pvlaDDSGL~vd 80 (224)
++|++||+-+--.+=++.+ ....++++ .+++...+. .+.. .....|..||+.+++... ..||+-|+=+
T Consensus 1 mklILAS~S~~R~~lL~~~--g~~f~v~~-~~idE~~~~~~~~~~~~v~~lA~~Ka~~v~~~~~~~~~~Vi~aDtvv--- 74 (192)
T PRK00078 1 MKVILASASERRQELLKRI--VEDFQVIV-SDFDESSVPFKGNIESYVMNLAEGKARSVSKKLDNESAIVIGCDTVV--- 74 (192)
T ss_pred CEEEEECCCHHHHHHHHHC--CCCCEEEC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECEEE---
T ss_conf 9799927999999999718--99979971-99897988778998999999999999999975279997999968199---
Q ss_pred HHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 4201445143443045788688899999988777521356777650689986201323
Q gi|254780629|r 81 VLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWP 138 (224)
Q Consensus 81 aL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~ 138 (224)
.++|. -.++..+.+ .+.+.| ..+ ..|+-.+.|.+|+...
T Consensus 75 ~~~g~-------ilgKP~~~~---eA~~~L-~~l--------sgk~h~v~T~v~l~~~ 113 (192)
T PRK00078 75 AFNGK-------VLGKPKDEE---DAFEML-KAL--------SGNEHEVYSGIAILDT 113 (192)
T ss_pred EECCE-------EECCCCCHH---HHHHHH-HHC--------CCCCEEEEEEEEEEEC
T ss_conf 98999-------967999999---998505-650--------8994799999999988
No 25
>PRK01526 Maf-like protein; Reviewed
Probab=91.46 E-value=1.2 Score=24.36 Aligned_cols=115 Identities=13% Similarity=0.061 Sum_probs=59.4
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCE--EEEHHHCCCC-CCCCCC-CCHHHHHHHHHHHHCCCC--CCEEEEECHHHHH
Q ss_conf 777999849922799999973007919--9724447885-666676-554567787653311345--6307852012434
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGIM--TTSALELNLI-IPEETG-NSFEENAMIKSLTAAKNA--GMPALSDDSGLVI 79 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i~--~~~~~~~~~~-~peE~g-~tf~eNA~~KA~~~~~~~--~~pvlaDDSGL~v 79 (224)
+.+|++||+-+--.+ +|..+++. .+...+++.. .+.|.. .--...|..||..++... ...||+-|+=+
T Consensus 7 ~~~iILAS~SprR~e----LL~~~gi~~~~v~p~~idE~~~~~~~p~~~a~~lA~~KA~~v~~~~~~~~~VIgaDTvv-- 80 (205)
T PRK01526 7 NLPIILASSSPARIE----LLNRIKIIPSQIIPADIDETPNLRELPAPLAIRLAYEKAIKIASQIEESAIIIAADTVA-- 80 (205)
T ss_pred CCCEEEECCCHHHHH----HHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEE--
T ss_conf 996999079999999----99877998329957998888886659999999999999999998529998999979399--
Q ss_pred HHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEE
Q ss_conf 3420144514344304578868889999998877752135677765068998620132342104564
Q gi|254780629|r 80 DVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFS 146 (224)
Q Consensus 80 daL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~ 146 (224)
.++|. -.++..+.+ .+.. .+..+. .++-.+.|.+|++..++....++
T Consensus 81 -~~~g~-------il~KP~~~e---eA~~-~L~~ls--------Gk~H~v~Tgv~i~~~~~~~~~~~ 127 (205)
T PRK01526 81 -AVGRR-------ILPKATTYE---EVKN-CIKMLS--------GRRHRVYTGLCIIKKENDQLTVR 127 (205)
T ss_pred -EECCE-------EECCCCCHH---HHHH-HHHHHC--------CCCEEEEEEEEEEECCCCEEEEE
T ss_conf -98999-------968999999---9999-999977--------99179998999998899838999
No 26
>PRK03442 consensus
Probab=90.41 E-value=1.5 Score=23.77 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=40.8
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCC------CCCCCCCH-HHHHHHHHHHHCCCC------CCEE
Q ss_conf 77799984992279999997300791--997244478856------66676554-567787653311345------6307
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLII------PEETGNSF-EENAMIKSLTAAKNA------GMPA 70 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~------peE~g~tf-~eNA~~KA~~~~~~~------~~pv 70 (224)
|.+|++||+-+.-.+ +|+.+|+ ++++ .+++.+. +.++...+ ...|..||+.++... ...|
T Consensus 1 M~klILAS~SprR~~----lL~~~g~~f~v~~-~~iDE~~~~~~~~~~~~p~~~v~~lA~~KA~~v~~~~~~~~~~d~lV 75 (213)
T PRK03442 1 MTRLVLGSASPGRLK----VLRQAGIDPLVVV-SGVDEDAVIAALGPDAPPSDVVCALAAAKAAQVATALPREVAADCVV 75 (213)
T ss_pred CCCEEECCCCHHHHH----HHHHCCCCEEEEC-CCCCCCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 984898689999999----9997799819974-89998730112478899999999999999999997573434789799
Q ss_pred EEECHHHHHH
Q ss_conf 8520124343
Q gi|254780629|r 71 LSDDSGLVID 80 (224)
Q Consensus 71 laDDSGL~vd 80 (224)
|+-|+-++++
T Consensus 76 i~aDtiv~~~ 85 (213)
T PRK03442 76 VGCDSMLYID 85 (213)
T ss_pred EECCEEEEEC
T ss_conf 9689199989
No 27
>PRK00238 consensus
Probab=90.34 E-value=1.5 Score=23.74 Aligned_cols=109 Identities=18% Similarity=0.207 Sum_probs=55.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCC-CCCCCCCC-HHHHHHHHHHHHCCC----CCCEEEEECHHHHH
Q ss_conf 7779998499227999999730079199724447885-66667655-456778765331134----56307852012434
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLI-IPEETGNS-FEENAMIKSLTAAKN----AGMPALSDDSGLVI 79 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~-~peE~g~t-f~eNA~~KA~~~~~~----~~~pvlaDDSGL~v 79 (224)
|++|++||+-+-..+=++.+ .+..++++. +++.. .+.++... ....|..||..+... .+..||+-|+-+++
T Consensus 1 M~~lILAS~Sp~R~~lL~~~--gi~f~~~~~-~iDE~~~~~~~p~~~~~~lA~~KA~a~~~~~~~~~~~lVIgaDtvv~~ 77 (198)
T PRK00238 1 MPSLYLASGSPRRRELLTQI--GVPFSVLSA-PIDETPLPDESPAAYVERLARGKAAAGLAMLGAEGPACVLGADTAVVL 77 (198)
T ss_pred CCCEEECCCCHHHHHHHHHC--CCCCEEEEC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEE
T ss_conf 99889838999999999878--998299838-999998888899999999999999999998653899689944819998
Q ss_pred HHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCC
Q ss_conf 342014451434430457886888999999887775213567776506899862013234
Q gi|254780629|r 80 DVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPD 139 (224)
Q Consensus 80 daL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~ 139 (224)
+|. -.++..+. +.+.+.|. .+. .++-.+.|.++++..+
T Consensus 78 ---~g~-------i~~KP~~~---~eA~~~L~-~ls--------Gk~H~v~T~v~l~~~~ 115 (198)
T PRK00238 78 ---DGR-------ILGKPVDR---ADALAMLA-ALS--------GREHQVLTAVALADGQ 115 (198)
T ss_pred ---CCE-------EECCCCCH---HHHHHHHH-HHC--------CCCEEEEEEEEEECCC
T ss_conf ---999-------96899999---99999999-727--------9955999999998299
No 28
>PRK03797 consensus
Probab=89.25 E-value=1.9 Score=23.23 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=57.2
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCC-CCCCCCHHHHHHHHHHHHCCCC-CCEEEEECHHHHHHHHHCCC
Q ss_conf 999849922799999973007919972444788566-6676554567787653311345-63078520124343420144
Q gi|254780629|r 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIP-EETGNSFEENAMIKSLTAAKNA-GMPALSDDSGLVIDVLDGKP 86 (224)
Q Consensus 9 ii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~p-eE~g~tf~eNA~~KA~~~~~~~-~~pvlaDDSGL~vdaL~G~P 86 (224)
|++||+-+--.+=++++ +.+++.+ .+++.... .+.-..-...|..||..+++.. +..||+-|+-+ .++|..
T Consensus 2 lILAS~Sp~R~~lL~~~---i~f~v~~-~~idE~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~VIgaDtvv---~~~g~i 74 (186)
T PRK03797 2 IILASSSPRRREILSRF---FEIKVYP-SNVSERSSIKDPREHALDLARKKALEVYSRFPKATIIAADTIV---SLGGKI 74 (186)
T ss_pred EEECCCCHHHHHHHHCC---CCCEEEC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEE---EECCEE
T ss_conf 89868999999999757---9979978-9989888888999999999999999999878998699986299---989999
Q ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEE
Q ss_conf 514344304578868889999998877752135677765068998620132342104
Q gi|254780629|r 87 GIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVE 143 (224)
Q Consensus 87 GvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~ 143 (224)
.++..+. +.+.+.| ..+. .++-.+.|.+|+..+ +.+.
T Consensus 75 -------~gKP~~~---~eA~~~L-~~ls--------Gk~h~v~T~v~i~~~-~~~~ 111 (186)
T PRK03797 75 -------LGKPKNE---EEARKML-KTLS--------GKVHLVITGYCIIHN-GKII 111 (186)
T ss_pred -------ECCCCCH---HHHHHHH-HHHC--------CCCEEEEEEEEEEEC-CEEE
T ss_conf -------6799999---9999999-9978--------992699999999999-9999
No 29
>PRK01170 phosphopantetheine adenylyltransferase/unknown domain fusion protein; Provisional
Probab=85.90 E-value=2 Score=23.04 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=51.8
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHC--CCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHH
Q ss_conf 6656777999849922799999973007--91997244478856666765545677876533113456307852012434
Q gi|254780629|r 2 RKLIENNIVIASHNVDKIHEMDSLIMPL--GIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVI 79 (224)
Q Consensus 2 ~~~~~~kii~aT~N~~K~~E~~~iL~~~--~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~v 79 (224)
|+.+.-|+-++|+|+-|++-++..|..+ +..++.-.+.++..|+--|..-..-|...|..+++ -+...+.=.|||+-
T Consensus 146 k~~~~~k~~~~~~n~~k~~a~~~~~~~~~~~~~~~~~~~~~~~~~qp~~~~t~~~a~~ra~~~~~-d~d~svgie~gl~~ 224 (328)
T PRK01170 146 KRKKPIKVSISTGNDAKERALKVFLSNLMKNFRVTRNSDYKLETQQPFGEDTMRFATERAMSGLK-DNDYSVGIESGIYY 224 (328)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCEEE
T ss_conf 62475589854798688899999999986430202275444568998860889899999986503-47622322021454
Q ss_pred HH
Q ss_conf 34
Q gi|254780629|r 80 DV 81 (224)
Q Consensus 80 da 81 (224)
+.
T Consensus 225 ~~ 226 (328)
T PRK01170 225 EK 226 (328)
T ss_pred EE
T ss_conf 52
No 30
>pfam11576 DUF3236 Protein of unknown function (DUF3236). This family of proteins with unknown function appears to be restricted to Methanobacteria.
Probab=83.19 E-value=2 Score=23.07 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=38.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf 777999849922799999973007919972444788566667655456778765331134563
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~ 68 (224)
-++|+.+|+|..|++-+..+|..++..-+...+ .|....+--.--|+.|+.-+.+.+..
T Consensus 35 Ak~ivV~t~N~kKf~vin~il~~~~~~~~~ml~----i~Tn~ADltRmPAi~K~liAvD~sdA 93 (154)
T pfam11576 35 AKRIVVPTNNEKKFKVVNDVLRRFGLPEAEMLQ----IPTNSADLTRMPAVSKALMALDISDA 93 (154)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE----CCCCCCCCCCCCHHHHHHHEEECCCC
T ss_conf 564998559834568999999973797510466----46862001138077655421313688
No 31
>PRK05074 NTPase; Reviewed
Probab=82.66 E-value=2.9 Score=22.11 Aligned_cols=60 Identities=17% Similarity=0.070 Sum_probs=35.8
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHC----CCEEEEHHHCCCCCCCCCCCCHH---HHHHHHHHHHCCC
Q ss_conf 56777999849922799999973007----91997244478856666765545---6778765331134
Q gi|254780629|r 4 LIENNIVIASHNVDKIHEMDSLIMPL----GIMTTSALELNLIIPEETGNSFE---ENAMIKSLTAAKN 65 (224)
Q Consensus 4 ~~~~kii~aT~N~~K~~E~~~iL~~~----~i~~~~~~~~~~~~peE~g~tf~---eNA~~KA~~~~~~ 65 (224)
|+|+||.++|.|+-|++=++..|..+ .+++.+.. .+-. +.+|--+.+ .=|+-.|+.+.+.
T Consensus 1 ~~mmkV~VGS~NPvKv~AV~~af~~~f~~~~~~v~~v~-v~Sg-V~~QP~~~eET~~GA~NRA~~A~~~ 67 (174)
T PRK05074 1 LQMIKVIVASTNPAKINAALQAFSEIFPEGSIHIEGVA-VPSG-VPDQPMGSEETRQGARNRVKNARQL 67 (174)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEC-CCCC-CCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97579999469859999999999986799726999743-7989-7999988899999999999999971
No 32
>PRK03114 NTPase; Reviewed
Probab=80.75 E-value=3.7 Score=21.49 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=35.9
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCH---HHHHHHHHHHHCCC
Q ss_conf 779998499227999999730079199724447885666676554---56778765331134
Q gi|254780629|r 7 NNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSF---EENAMIKSLTAAKN 65 (224)
Q Consensus 7 ~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf---~eNA~~KA~~~~~~ 65 (224)
+||.++|.||-|++=+++.|.+..+..++..+ ... .|--+. ..=|+-.|+.+.+.
T Consensus 1 mkV~VGS~NP~Kv~Av~~af~~~~v~~v~V~S-gV~---~QP~~~eET~~GA~NRA~~A~~~ 58 (170)
T PRK03114 1 MKIAVGSKNKTKVGAVEKVWKDAEITSVSVPS-GVA---AQPFSDEETMQGAINRAKRALEE 58 (170)
T ss_pred CEEEEECCCHHHHHHHHHHHCCCEEEEEECCC-CCC---CCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 96999369879999999985267799985699-968---99988799999999999999756
No 33
>pfam02545 Maf Maf-like protein. Maf is a putative inhibitor of septum formation in eukaryotes, bacteria, and archaea.
Probab=79.76 E-value=5.3 Score=20.61 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=58.7
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCC-CCCCC--CCCHHHHHHHHHHHHCCCC---CCEEEEECHHHH
Q ss_conf 7799984992279999997300791--99724447885-66667--6554567787653311345---630785201243
Q gi|254780629|r 7 NNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLI-IPEET--GNSFEENAMIKSLTAAKNA---GMPALSDDSGLV 78 (224)
Q Consensus 7 ~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~-~peE~--g~tf~eNA~~KA~~~~~~~---~~pvlaDDSGL~ 78 (224)
++|++||+-+--.+= |+.+|+ ++++ .+++.. .+.+. .......|..||+...... +.+||+-|+-++
T Consensus 1 m~lILAS~S~~R~~l----L~~~gi~f~~~~-~~iDE~~~~~~~~p~~~~~~lA~~KA~~~~~~~~~~~~ivi~aDtiv~ 75 (193)
T pfam02545 1 MPLILASTSPRRKEL----LEDLGIPFEVIV-SYFDEESVLYSLDPREYVVDLACEKALAKVAQLAPDNALIIGADTVVI 75 (193)
T ss_pred CCEEECCCCHHHHHH----HHHCCCCCEEEC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEE
T ss_conf 999993799999999----997799939978-998988786767866899999999999999974799969999365999
Q ss_pred HHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEE
Q ss_conf 4342014451434430457886888999999887775213567776506899862013234210456433
Q gi|254780629|r 79 IDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGK 148 (224)
Q Consensus 79 vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~ 148 (224)
++|. ..++..+.+ .+.+.+ ..+. .++-.+.|.+|+..+ +.++.+.-.
T Consensus 76 ---~~g~-------il~KP~~~~---eA~~~L-~~ls--------Gk~h~v~Tav~l~~~-~~~~~~~~~ 122 (193)
T pfam02545 76 ---LGGR-------ILGKPKDKE---EAREML-RKLS--------GNVHSVYTGLALISP-EKNLLFLEV 122 (193)
T ss_pred ---ECCE-------EECCCCCHH---HHHHHH-HHHC--------CCCEEEEEEEEEEEC-CEEEEEEEE
T ss_conf ---8999-------978999999---999999-9987--------996699999999989-939999998
No 34
>cd00555 Maf Nucleotide binding protein Maf. Maf has been implicated in inhibition of septum formation in eukaryotes, bacteria and archaea, but homologs in B.subtilis and S.cerevisiae are nonessential for cell division. Maf has been predicted to be a nucleotide- or nucleic acid-binding protein with structural similarity to the hypoxanthine/xanthine NTP pyrophosphatase Ham1 from Methanococcus jannaschii, RNase H from Escherichia coli, and some other nucleotide or RNA-binding proteins.
Probab=79.53 E-value=5.4 Score=20.56 Aligned_cols=111 Identities=19% Similarity=0.189 Sum_probs=57.9
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCC----CHHHHHHHHHHHHCCCC--CCEEEEECHHHHHHHH
Q ss_conf 99984992279999997300791997244478856666765----54567787653311345--6307852012434342
Q gi|254780629|r 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGN----SFEENAMIKSLTAAKNA--GMPALSDDSGLVIDVL 82 (224)
Q Consensus 9 ii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~----tf~eNA~~KA~~~~~~~--~~pvlaDDSGL~vdaL 82 (224)
|++||+-+.-.+ +|+.+|+..... ..+++|....+. .-...|..||+.+++.. +..+|+-|+-++ +
T Consensus 1 iILaS~S~~R~~----lL~~~gi~f~~~-~~~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~iiI~aDtvv~---~ 72 (180)
T cd00555 1 LILASASPRRRE----LLEQLGIPFEVV-PSDIDETPIKGESPEDYVLRLAEAKAEAVAARLPPDALVIGADTVVV---L 72 (180)
T ss_pred CEECCCCHHHHH----HHHHCCCCEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCEEEE---E
T ss_conf 987779999999----999779984997-89999898889999999999999999999974789988998180999---8
Q ss_pred HCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEE
Q ss_conf 0144514344304578868889999998877752135677765068998620132342104564
Q gi|254780629|r 83 DGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFS 146 (224)
Q Consensus 83 ~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~ 146 (224)
+|.. .++..+. +.+.+.|. .+ ..+.-.+.|.++++.+++..+.+.
T Consensus 73 ~g~i-------~~KP~~~---~~A~~~L~-~l--------sgk~h~v~T~v~v~~~~~~~~~~~ 117 (180)
T cd00555 73 DGRI-------LGKPKDR---EEAREMLK-RL--------SGRTHEVYTGVALIDPGGKLVTDV 117 (180)
T ss_pred CCEE-------CCCCCCH---HHHHHHHH-HH--------CCCCEEEEEEEEEEECCCEEEEEE
T ss_conf 9998-------4798769---99999677-53--------799479999999998996799999
No 35
>PRK01839 Maf-like protein; Reviewed
Probab=79.28 E-value=5.5 Score=20.52 Aligned_cols=111 Identities=16% Similarity=0.189 Sum_probs=57.3
Q ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCC----CCCCCCCH----HHHHHHHHHHHCC------CCC
Q ss_conf 5677799984992279999997300791--997244478856----66676554----5677876533113------456
Q gi|254780629|r 4 LIENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLII----PEETGNSF----EENAMIKSLTAAK------NAG 67 (224)
Q Consensus 4 ~~~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~----peE~g~tf----~eNA~~KA~~~~~------~~~ 67 (224)
-|..+|++||+-+--.+ +|..+|+ ++++. +++.+. -+-.+.+. ...|..||..+.. +.+
T Consensus 7 ~~~p~IILAS~SprR~~----lL~~~gi~f~~~~~-~~dE~~~~~e~~~~~~~p~~~v~~la~~Ka~~~~~~~~~~~~p~ 81 (209)
T PRK01839 7 ALFPFLYLASQSPRRQE----LLQQLGVRYELLLP-RPDEDAEALEAELPGEAPDAYVQRVCVAKAEAARARLVARGLPA 81 (209)
T ss_pred CCCCCEEECCCCHHHHH----HHHHCCCCCEEECC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77888898579999999----99878999589788-99876320113378999899999999999999999876404999
Q ss_pred CEEEEECHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf 30785201243434201445143443045788688899999988777521356777650689986201323421
Q gi|254780629|r 68 MPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGH 141 (224)
Q Consensus 68 ~pvlaDDSGL~vdaL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~ 141 (224)
.+||+-|+-+ .++|. ..++..+. +.+.+.| ..+. .|+..+.|.++++..++.
T Consensus 82 ~~VIgaDtiv---~~~g~-------ilgKP~~~---eeA~~~L-~~ls--------Gk~H~v~T~v~v~~~~~~ 133 (209)
T PRK01839 82 APVLVADTTV---TIDGA-------ILGKPADA---ADALAML-TRLA--------GRTHRVLTAVAVIDATGE 133 (209)
T ss_pred CEEEEECCEE---EECCE-------EECCCCCH---HHHHHHH-HHHC--------CCCEEEEEEEEEEECCCC
T ss_conf 9799989889---98999-------96899999---9999999-9866--------996699999999978996
No 36
>COG4019 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.12 E-value=4 Score=21.34 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=38.7
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE
Q ss_conf 7779998499227999999730079199724447885666676554567787653311345630
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMP 69 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~p 69 (224)
-++++.+|+|+.|++-+..+|..+++--....+++ .+-.+--.--|+.||.-+.+..+.-
T Consensus 36 A~r~vV~t~N~~K~~aindvlrrf~l~Eaeml~~~----T~~ADlTrmPA~tKalmaldis~AD 95 (156)
T COG4019 36 AKRIVVATNNQKKFKAINDVLRRFCLAEAEMLDID----TRFADLTRMPALTKALMALDISKAD 95 (156)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHCCC----CCHHHCCCCHHHHHHHHHCCCCCCC
T ss_conf 45388724978999999999998244067770576----4144244481899888841115783
No 37
>PRK04694 Maf-like protein; Reviewed
Probab=75.33 E-value=7.1 Score=19.85 Aligned_cols=108 Identities=18% Similarity=0.211 Sum_probs=54.6
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCC---CCCCCC-CHHHHHHHHHHHHC-----CCCCCEEEEECHHHHH
Q ss_conf 99984992279999997300791997244478856---666765-54567787653311-----3456307852012434
Q gi|254780629|r 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLII---PEETGN-SFEENAMIKSLTAA-----KNAGMPALSDDSGLVI 79 (224)
Q Consensus 9 ii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~---peE~g~-tf~eNA~~KA~~~~-----~~~~~pvlaDDSGL~v 79 (224)
|++||+-+-..+=++.+ .+...+++ .+++| +.|... .....|..||+... ...+..||+-|+-++
T Consensus 2 iILAS~SprR~~lL~~~--gi~f~v~~---~didE~~~~~~~p~~~v~~lA~~KA~~~~~~~~~~~~~~~VIgaDtvv~- 75 (190)
T PRK04694 2 LYLASRSPRRRELLQRL--DVPFQTLQ---LDVPEVRAADESPDHYVQRVALEKAHAGLALVQAADADAIVLGSDTEVV- 75 (190)
T ss_pred EEECCCCHHHHHHHHHC--CCCCEEEC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCEEEE-
T ss_conf 89988999999999878--99839966---9998776877798999999999999998898775389988992382999-
Q ss_pred HHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEE
Q ss_conf 3420144514344304578868889999998877752135677765068998620132342104
Q gi|254780629|r 80 DVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVE 143 (224)
Q Consensus 80 daL~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~ 143 (224)
++|. ..++..+.++ +.+.| ..+. .|+-.+.|.++++.+++..+
T Consensus 76 --~~g~-------ilgKP~~~~~---A~~~L-~~ls--------Gk~H~v~T~v~l~~~~~~~~ 118 (190)
T PRK04694 76 --LGER-------VFGKPVDVDD---AIAML-RALS--------GRTHQVLTAVVLVCAQRAPA 118 (190)
T ss_pred --ECCE-------EECCCCCHHH---HHHHH-HHHC--------CCEEEEEEEEEEEECCCCEE
T ss_conf --8999-------9789899999---99999-9978--------99389999999997898369
No 38
>PRK02141 Maf-like protein; Reviewed
Probab=75.19 E-value=7.2 Score=19.83 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=40.5
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHCCCCCCCCCCCC----HHHHHHHHHHHHCCCC----CCEEEEECH
Q ss_conf 77799984992279999997300791--9972444788566667655----4567787653311345----630785201
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALELNLIIPEETGNS----FEENAMIKSLTAAKNA----GMPALSDDS 75 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~~~~~peE~g~t----f~eNA~~KA~~~~~~~----~~pvlaDDS 75 (224)
..+|++||+-+--.+ +|..+|+ ++++. ++ +|....+.+ -...|..||+.++... +..||+-|+
T Consensus 8 ~pklILAS~SprR~e----LL~~~Gi~f~v~~~-~i--DE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~~~lVIgaDt 80 (206)
T PRK02141 8 PPRLILASSSRYRRE----LLERLRLPFDVVSP-DI--DETPLAGETPAATALRLAAAKARAVAATIDAPPGALVIGSDQ 80 (206)
T ss_pred CCCEEEECCCHHHHH----HHHHCCCCCEEECC-CC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECE
T ss_conf 997999379999999----99878999599858-99--988899999999999999999999987610599979999497
Q ss_pred HHHHH
Q ss_conf 24343
Q gi|254780629|r 76 GLVID 80 (224)
Q Consensus 76 GL~vd 80 (224)
-++++
T Consensus 81 vv~~~ 85 (206)
T PRK02141 81 VATFD 85 (206)
T ss_pred EEEEC
T ss_conf 99859
No 39
>COG1986 Inosine/xanthosine triphosphatase [Nucleotide transport and metabolism]
Probab=74.85 E-value=7.3 Score=19.78 Aligned_cols=61 Identities=10% Similarity=-0.022 Sum_probs=36.6
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHCCC--EEEEHHHC-CCCCCCCCCCCHHHHHHHHHHHHCCCC
Q ss_conf 77799984992279999997300791--99724447-885666676554567787653311345
Q gi|254780629|r 6 ENNIVIASHNVDKIHEMDSLIMPLGI--MTTSALEL-NLIIPEETGNSFEENAMIKSLTAAKNA 66 (224)
Q Consensus 6 ~~kii~aT~N~~K~~E~~~iL~~~~i--~~~~~~~~-~~~~peE~g~tf~eNA~~KA~~~~~~~ 66 (224)
|.++.++|+|+-|++-+++.|..+.. .++..... ..+..+-....-..-|+..|+.+.+..
T Consensus 1 m~~V~vgT~NpaKi~Av~~af~~~~~~~~v~~v~v~sgv~~QPfg~eeT~~GA~nRA~~A~~~~ 64 (175)
T COG1986 1 MVKVAVGTTNPAKIRAVEEAFERLFGNVEVVGVAVDSGVPPQPFGDEETVQGARNRAKNALRAV 64 (175)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 9699964898299999999999836754999712688999999674999999999999987412
No 40
>TIGR00505 ribA GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process.
Probab=69.57 E-value=3 Score=22.04 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=18.5
Q ss_pred CCCCEEEEECCCCCHHHHHHHH
Q ss_conf 5677799984992279999997
Q gi|254780629|r 4 LIENNIVIASHNVDKIHEMDSL 25 (224)
Q Consensus 4 ~~~~kii~aT~N~~K~~E~~~i 25 (224)
+.-+++-+.||||.|+++++.+
T Consensus 163 L~v~~vRLLTNNP~Ki~~l~~a 184 (227)
T TIGR00505 163 LGVKKVRLLTNNPKKIEELKKA 184 (227)
T ss_pred CCCCEEEECCCCHHHHHHHHHC
T ss_conf 5867277416896899998757
No 41
>TIGR02317 prpB methylisocitrate lyase; InterPro: IPR012695 Propionate is the second most abundant low molecular mass carbon source found in soil, being generated by the degradation of several amino acids, fementation of crabohydrates and the oxidation of odd-chain fatty acids. Many different organisms are capable of metabolising propionate and several distinct pathways for utilising this compound exist, all of which begin with its activation to propionyl-CoA . Many bacteria metabolise propionate to pyruvate by the 2-methylcitric acid cycle. In the first step, catalysed by methycitrate synthase, oxaloacetate and propionyl-CoA are condensed to form 2-methylcitrate and CoA. The 2-methylcitrate is subsequently converted to 2-methylisocitrate by the combined actions of a dehydratase and an aconitase. In the final step, 2-methylisocitrate lyase cleaves a C-C bond within this compound to form succinate and pyruvate. The succinate is further oxidised to oxaloacetate which re-enters the cycle, while the pyruvate can be used further for either energy generation or biomass synthesis. Proteins in this entry are mostly 2-methylisocitrate lyases. Some of them have been annotated (incorrectly it seems) as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. Structural studies indicate that these enzymes belong to the isocitrate lyase family, binding a Mg(2+) cofactor and forming a TIM barrel fold , . As with other enzymes in this family, substrate-binding induces a conformational change that prevents solvent access to the active site and which is important for catalysis. .
Probab=67.92 E-value=4.3 Score=21.10 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=27.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE-CHHH
Q ss_conf 856666765545677876533113456307852-0124
Q gi|254780629|r 41 LIIPEETGNSFEENAMIKSLTAAKNAGMPALSD-DSGL 77 (224)
Q Consensus 41 ~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaD-DSGL 77 (224)
+-.|.--=.|+.|+|. -+|++..-+.+|+|+| |||.
T Consensus 49 LGlPDLG~~tL~Eva~-~~r~Itr~~~LPlLVD~DTGF 85 (287)
T TIGR02317 49 LGLPDLGITTLTEVAE-RARRITRVTDLPLLVDADTGF 85 (287)
T ss_pred HCCCCCCCCCHHHHHH-HHHHHHHHCCCCEEEEEECCC
T ss_conf 0677676678789999-988777530487278633289
No 42
>PRK04056 Maf-like protein; Reviewed
Probab=62.64 E-value=13 Score=18.25 Aligned_cols=105 Identities=15% Similarity=0.100 Sum_probs=52.3
Q ss_pred EEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCC-CCCCCC-CCHHHHHHHHHHHHCCCC--CCEEEEECHHHHHHHHHC
Q ss_conf 9998499227999999730079199724447885-666676-554567787653311345--630785201243434201
Q gi|254780629|r 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLI-IPEETG-NSFEENAMIKSLTAAKNA--GMPALSDDSGLVIDVLDG 84 (224)
Q Consensus 9 ii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~-~peE~g-~tf~eNA~~KA~~~~~~~--~~pvlaDDSGL~vdaL~G 84 (224)
|++||+-+--.+=++.+ .+..++++ .+++.. .+.+.. ..-...|..||..+.+.. ..++|+-|+=+. ++|
T Consensus 2 iILAS~SprR~~lL~~~--gi~f~~~~-~~iDE~~~~~~~p~~~v~~la~~Ka~~~~~~~~~~~~vi~aDtvv~---~~g 75 (180)
T PRK04056 2 IILASSSPTRANLLKEA--GIEFEQKS-VDFDEESIKKTSPKEFVYLAVKGKLEQALKLYGNNCNLLVADSVVS---CDG 75 (180)
T ss_pred EEECCCCHHHHHHHHHC--CCCCEEEC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECEEEE---ECC
T ss_conf 89978999999999977--99969971-8999988777899999999999999999987199986999786999---899
Q ss_pred CCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 445143443045788688899999988777521356777650689986201323
Q gi|254780629|r 85 KPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWP 138 (224)
Q Consensus 85 ~PGvySaR~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~ 138 (224)
. ..++..+.+ .+.+.+ ..+. .++-.+.|++++..+
T Consensus 76 ~-------ilgKP~~~~---~A~~~L-~~ls--------Gk~h~v~T~v~~~~~ 110 (180)
T PRK04056 76 K-------ILRKAKDKE---EAREML-KLQS--------GNEISVLTCMIFISP 110 (180)
T ss_pred E-------EECCCCCHH---HHHHHH-HHHC--------CCEEEEEEEEEEECC
T ss_conf 9-------987999999---999999-9868--------993999999999729
No 43
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=62.47 E-value=14 Score=18.23 Aligned_cols=82 Identities=17% Similarity=0.266 Sum_probs=54.7
Q ss_pred CCCCEEEEE--CCCCCHHHHHHHHHHHCCCEEEEHHH------CCC----C----------------CCCC--CCCCHHH
Q ss_conf 567779998--49922799999973007919972444------788----5----------------6666--7655456
Q gi|254780629|r 4 LIENNIVIA--SHNVDKIHEMDSLIMPLGIMTTSALE------LNL----I----------------IPEE--TGNSFEE 53 (224)
Q Consensus 4 ~~~~kii~a--T~N~~K~~E~~~iL~~~~i~~~~~~~------~~~----~----------------~peE--~g~tf~e 53 (224)
||+++|++. ..-.||-+=.-.+-+.++.++++... ++| + +|.| +...|.+
T Consensus 1 ~~~~~ii~i~GpTasGKs~la~~la~~~~~eIIsaDS~QvYk~l~IgTakps~~e~~~i~Hhli~~~~~~e~~sv~~f~~ 80 (304)
T PRK00091 1 MMKPKLIVLVGPTASGKTALAIELAKRLNGEIISVDSMQVYRGMDIGTAKPTAEELAGVPHHLIDILDPTESYSAADFQR 80 (304)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEECHHHHHCCCCEEECCCCHHHHCCCCCEEEEEECCCCCEEHHHHHH
T ss_conf 99997799989886589999999999879989941268874999868899999998189812434565887544999999
Q ss_pred HHHHHHHHHCCCCCCEEEEECHHHHHHHH-HCC
Q ss_conf 77876533113456307852012434342-014
Q gi|254780629|r 54 NAMIKSLTAAKNAGMPALSDDSGLVIDVL-DGK 85 (224)
Q Consensus 54 NA~~KA~~~~~~~~~pvlaDDSGL~vdaL-~G~ 85 (224)
-|......+.+.-+.|+|+=-|||+++|| +|.
T Consensus 81 ~a~~~i~~i~~~~kiPIiVGGTglYl~aLl~g~ 113 (304)
T PRK00091 81 DALAAIEDITARGKLPILVGGTGLYFKALLEGL 113 (304)
T ss_pred HHHHHHHHHHHCCCCCEEECCCHHHHHHHHCCC
T ss_conf 999999999976998789808389999997187
No 44
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=62.08 E-value=14 Score=18.19 Aligned_cols=83 Identities=17% Similarity=0.231 Sum_probs=55.0
Q ss_pred CCCEEEEECCCCCH-HH-HHHHHHHHCC--CEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECHHHHH
Q ss_conf 67779998499227-99-9999730079--19972444788566667655456778765331134-56307852012434
Q gi|254780629|r 5 IENNIVIASHNVDK-IH-EMDSLIMPLG--IMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN-AGMPALSDDSGLVI 79 (224)
Q Consensus 5 ~~~kii~aT~N~~K-~~-E~~~iL~~~~--i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~v 79 (224)
|.+||.|+|-..|- ++ ++..+|...| .+++. +.... +...+|-+-|..-|+.+.+. ...-++..-||.=+
T Consensus 1 M~mkI~igsDHaG~~lK~~l~~~L~~~g~~~~V~D---~G~~~--~~~~DYPd~a~~va~~V~~~~~~~GIliCGtGiG~ 75 (156)
T PTZ00215 1 MTRRVAIGCDHAAFAIHEEIMDYVSAAGDEFKVMY---MGPSS--DESVDYPDYAAQVCEAVARGEADTGILVCGTGIGM 75 (156)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEE---CCCCC--CCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCEE
T ss_conf 99639998284489999999999997699569896---29998--88898278999999999748871699980799300
Q ss_pred -HHHHCCCCHHHHH
Q ss_conf -3420144514344
Q gi|254780629|r 80 -DVLDGKPGIHSAR 92 (224)
Q Consensus 80 -daL~G~PGvySaR 92 (224)
=+-|-+|||+.|-
T Consensus 76 siaANK~~GIRAa~ 89 (156)
T PTZ00215 76 SIAANKVPGIRAAL 89 (156)
T ss_pred EEHHHCCCCEEEEE
T ss_conf 00000558989974
No 45
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=60.18 E-value=10 Score=19.00 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=54.8
Q ss_pred EEECCCCCHHHHHHHHHHHCCCEEEEHH-------HC-CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEE------ECH
Q ss_conf 9984992279999997300791997244-------47-885666676554567787653311345630785------201
Q gi|254780629|r 10 VIASHNVDKIHEMDSLIMPLGIMTTSAL-------EL-NLIIPEETGNSFEENAMIKSLTAAKNAGMPALS------DDS 75 (224)
Q Consensus 10 i~aT~N~~K~~E~~~iL~~~~i~~~~~~-------~~-~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvla------DDS 75 (224)
.+.-+|.+-+.|++++|..+|+++.... ++ +++.-.-+-.-|-|.+..-|++.-+.+|.|.+. ..+
T Consensus 168 ~LGF~~r~D~~Ei~RLl~~lGi~VNvV~P~Gas~~dl~rL~~A~~Nv~lYrE~g~~aa~~Le~~fg~P~~~~~PiGv~~T 247 (524)
T PRK02910 168 ALGFHNRDDLTELRRLLATLGIDVNVVAPLGASPADLKRLPAAWFNVVLYREIGESAAEYLEREFGMPYVTTVPIGVGAT 247 (524)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHHCCCEECCCCCCHHHH
T ss_conf 56768778899999999875966889804999978885102040746425877799999999885897010347541799
Q ss_pred HHHHHHHHCCCCH
Q ss_conf 2434342014451
Q gi|254780629|r 76 GLVIDVLDGKPGI 88 (224)
Q Consensus 76 GL~vdaL~G~PGv 88 (224)
.-||..|...-|+
T Consensus 248 ~~flrel~~~lg~ 260 (524)
T PRK02910 248 ARFIREVAELLNL 260 (524)
T ss_pred HHHHHHHHHHHCC
T ss_conf 9999999999689
No 46
>PRK03941 NTPase; Reviewed
Probab=56.02 E-value=18 Score=17.57 Aligned_cols=57 Identities=9% Similarity=0.044 Sum_probs=34.8
Q ss_pred CEEEEECCCCCHHHHHHHHHHHCC--CEEEEHHHC-CCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 779998499227999999730079--199724447-8856666765545677876533113
Q gi|254780629|r 7 NNIVIASHNVDKIHEMDSLIMPLG--IMTTSALEL-NLIIPEETGNSFEENAMIKSLTAAK 64 (224)
Q Consensus 7 ~kii~aT~N~~K~~E~~~iL~~~~--i~~~~~~~~-~~~~peE~g~tf~eNA~~KA~~~~~ 64 (224)
+|+.++|.|+-|++=++..|..+- +++.+..-- ...+.+-...|+ .=|+..|+.+.+
T Consensus 1 mkV~VGS~NpvKv~Av~~af~~~f~~~~v~~v~v~SgV~~QP~~~ET~-~GA~nRA~~A~~ 60 (174)
T PRK03941 1 MKVAVGSKNPVKVEAVRNVFGQIFDDVEVVGVEVSSGVPDQPFGEETV-RGAINRAKKAYR 60 (174)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCHHHH-HHHHHHHHHHHC
T ss_conf 979992699899999999999868981899943799979999987999-999999998617
No 47
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=55.84 E-value=11 Score=18.83 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=43.5
Q ss_pred EECCCCCHHHHHHHHHHHCCCEEEEHHHC--CC------CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 98499227999999730079199724447--88------56666765545677876533113456307852
Q gi|254780629|r 11 IASHNVDKIHEMDSLIMPLGIMTTSALEL--NL------IIPEETGNSFEENAMIKSLTAAKNAGMPALSD 73 (224)
Q Consensus 11 ~aT~N~~K~~E~~~iL~~~~i~~~~~~~~--~~------~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaD 73 (224)
|.=++.|-+.|++++|+.+||+|....-. .+ +----+=.-|.|.+..-|.|..++++.|.|.+
T Consensus 174 LGFH~r~D~~elrrlL~~LG~evN~v~P~GA~i~dL~~lp~Aw~NI~pYrE~G~~aA~YL~E~Fg~p~i~~ 244 (562)
T TIGR01278 174 LGFHHRHDLIELRRLLKTLGIEVNVVAPWGASIADLARLPAAWLNIAPYREIGLMAAEYLKEKFGIPYITE 244 (562)
T ss_pred CCCCCHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHC
T ss_conf 34232103389999996589479897379988588988666212235525589999999987458850121
No 48
>PRK03098 consensus
Probab=54.68 E-value=18 Score=17.44 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=47.9
Q ss_pred HHHHHHCCCE--EEEHHHCCCCCCCCCCCC----HHHHHHHHHHHHCCCC-CCEEEEECHHHHHHHHHCCCCHHHHHHHC
Q ss_conf 9973007919--972444788566667655----4567787653311345-63078520124343420144514344304
Q gi|254780629|r 23 DSLIMPLGIM--TTSALELNLIIPEETGNS----FEENAMIKSLTAAKNA-GMPALSDDSGLVIDVLDGKPGIHSARWAE 95 (224)
Q Consensus 23 ~~iL~~~~i~--~~~~~~~~~~~peE~g~t----f~eNA~~KA~~~~~~~-~~pvlaDDSGL~vdaL~G~PGvySaR~~~ 95 (224)
+.+|..+|+. +++ . +++|-...+.+ -...|..||+.+++.. +..||+-|+-+. ++|.. .+
T Consensus 10 ~~lL~~~gi~f~~~~-~--~iDE~~~~~~~p~~~~~~lA~~KA~~v~~~~~~~~vI~aDtvv~---~~g~i-------lg 76 (185)
T PRK03098 10 KELLELAGVPFEIIV-S--EVEETIGAYSSPSEIVQSLALQKASAVAENNPDAIVLGADTIVT---YDGRI-------LG 76 (185)
T ss_pred HHHHHHCCCCCEEEC-C--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECEEEE---ECCEE-------EC
T ss_conf 999986899959977-9--99999999969999999999999999998789987998771897---19978-------46
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEE
Q ss_conf 578868889999998877752135677765068998620132342104
Q gi|254780629|r 96 SNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVE 143 (224)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~ 143 (224)
+..+ .+.+.+.| ..+. .|+-.+.|.+|+.. ++++.
T Consensus 77 KP~~---~~eA~~~L-~~ls--------Gk~h~v~T~v~v~~-~~~~~ 111 (185)
T PRK03098 77 KPSD---EEEAKEML-QLLS--------GKTHEVYTGVAIIA-KDKTV 111 (185)
T ss_pred CCCC---HHHHHHHH-HHHC--------CCEEEEEEEEEEEE-CCEEE
T ss_conf 9765---99999999-9977--------99179998999998-99899
No 49
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A; InterPro: IPR013482 In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulphoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. This entry describes proteobacterial MobA (molybdopterin-guanine dinucleotide biosynthesis protein A). MobA synthesises molybdopterin-guanine dinucleotide from molybdopterin and GTP. ; GO: 0003824 catalytic activity, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=48.85 E-value=7.3 Score=19.79 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=22.9
Q ss_pred HHHHCCCCCCEEEEECHHHHHHHHHCCCCHHH
Q ss_conf 53311345630785201243434201445143
Q gi|254780629|r 59 SLTAAKNAGMPALSDDSGLVIDVLDGKPGIHS 90 (224)
Q Consensus 59 A~~~~~~~~~pvlaDDSGL~vdaL~G~PGvyS 90 (224)
++|.+.-.|.||+.|| +||+.|||||.+
T Consensus 53 ~~Y~~~g~Gl~V~~D~----~DA~~~F~GPLA 80 (202)
T TIGR02665 53 ERYAQAGFGLPVVPDD----VDALADFPGPLA 80 (202)
T ss_pred HHHHHHCCCCEECCCC----CCCCCCCCCCHH
T ss_conf 7898860897312785----343578888768
No 50
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=47.52 E-value=7.1 Score=19.85 Aligned_cols=75 Identities=17% Similarity=0.202 Sum_probs=54.7
Q ss_pred CCEEEEEEEECCCCCCCEE--EEEEEEEEEEEEC-CCCCCCCCCCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCC
Q ss_conf 5068998620132342104--5643332499826-411788572313665699847776898785012123222332334
Q gi|254780629|r 125 RSAHFISVLSLAWPDGHVE--NFSGKVSGIIVWP-PRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILST 201 (224)
Q Consensus 125 R~A~f~~~~~~~~~~~~~~--~f~G~~~G~I~~~-prG~~GFGyDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~ 201 (224)
-+|.| ||++.-++.++++ ...+++.|.|+.. .-++.+ -|=+|=+.....+++.++...|
T Consensus 298 ITA~Y-TVLvEgDd~~dP~ADEvRSILDGHIvLsR~LA~~~-HyPAIDVLaS~SRvm~~vv~~e---------------- 359 (430)
T TIGR02546 298 ITALY-TVLVEGDDMNDPIADEVRSILDGHIVLSRKLAERN-HYPAIDVLASLSRVMSQVVSKE---------------- 359 (430)
T ss_pred EEEEE-EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHHHHCCCCCCHH----------------
T ss_conf 53456-78762777998436655445423689989997416-8863566523664236778878----------------
Q ss_pred CCCCHHHHH--HHHHHHHHHHH
Q ss_conf 352589999--99999999876
Q gi|254780629|r 202 DLLSHRARA--FKCFVDNCLRI 221 (224)
Q Consensus 202 ~~iSHR~~A--l~kl~~~l~~~ 221 (224)
||+.| +++|+..+.++
T Consensus 360 ----H~~aA~~lR~LLA~Y~e~ 377 (430)
T TIGR02546 360 ----HRRAAGKLRRLLAKYKEV 377 (430)
T ss_pred ----HHHHHHHHHHHHHHHHHH
T ss_conf ----999999999999999999
No 51
>pfam01715 IPPT IPP transferase. This is a family of IPP transferases EC:2.5.1.8 also known as tRNA delta(2)-isopentenylpyrophosphate transferase. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37).
Probab=45.82 E-value=19 Score=17.40 Aligned_cols=40 Identities=23% Similarity=0.379 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHH-HCC
Q ss_conf 6765545677876533113456307852012434342-014
Q gi|254780629|r 46 ETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVL-DGK 85 (224)
Q Consensus 46 E~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL-~G~ 85 (224)
-+...|..-|......+...-..|+++=-|||+++|| +|.
T Consensus 36 ~sv~~f~~~a~~~i~~i~~~~k~PIiVGGTglYl~all~g~ 76 (253)
T pfam01715 36 YSAAEFQRDALEAIAEIRARGKIPLLVGGTGLYFKALLDGL 76 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCC
T ss_conf 61999999999999999966997289838089999997698
No 52
>PRK06548 ribonuclease H; Provisional
Probab=45.67 E-value=26 Score=16.60 Aligned_cols=73 Identities=22% Similarity=0.136 Sum_probs=45.0
Q ss_pred CCCCEEEEEC-----CCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCE-EEEECHHH
Q ss_conf 5677799984-----99227999999730079199724447885666676554567787653311345630-78520124
Q gi|254780629|r 4 LIENNIVIAS-----HNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMP-ALSDDSGL 77 (224)
Q Consensus 4 ~~~~kii~aT-----~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~p-vlaDDSGL 77 (224)
|++++|++.| +|||+ ..+++.+.......-.++..|.+..+=-|.++|..+.+....| +|--||-.
T Consensus 1 m~~~~iiiyTDGsc~gNPGp--------GGwg~~~~~~~~~~gg~~~tTNNrmEL~Avi~al~~~~~~~~~v~I~TDS~Y 72 (161)
T PRK06548 1 MTNNEIIAATDGSSLANPGP--------SGWAWYVDENTWDSGGWDIATNNIAELTAVRELLIATRHTDRPILILSDSKY 72 (161)
T ss_pred CCCCCEEEEECCCCCCCCCC--------CEEEEEECCCCEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECHHH
T ss_conf 99883999958588999986--------0479996787547588988779999999999999985358985899964799
Q ss_pred HHHHHHC
Q ss_conf 3434201
Q gi|254780629|r 78 VIDVLDG 84 (224)
Q Consensus 78 ~vdaL~G 84 (224)
+|+++..
T Consensus 73 vi~~it~ 79 (161)
T PRK06548 73 VINSLTK 79 (161)
T ss_pred HHHHHHH
T ss_conf 9999999
No 53
>KOG0971 consensus
Probab=44.84 E-value=16 Score=17.80 Aligned_cols=13 Identities=38% Similarity=0.483 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 2589999999999
Q gi|254780629|r 204 LSHRARAFKCFVD 216 (224)
Q Consensus 204 iSHR~~Al~kl~~ 216 (224)
+--|+.++++-++
T Consensus 936 l~~RA~~~K~~~e 948 (1243)
T KOG0971 936 LELRAAALKAEIE 948 (1243)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8899999999987
No 54
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=43.73 E-value=28 Score=16.42 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=52.6
Q ss_pred EEECCCCCHHHHHHHHHHHCCCEEEEH-------HHC-CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEE------EECH
Q ss_conf 998499227999999730079199724-------447-88566667655456778765331134563078------5201
Q gi|254780629|r 10 VIASHNVDKIHEMDSLIMPLGIMTTSA-------LEL-NLIIPEETGNSFEENAMIKSLTAAKNAGMPAL------SDDS 75 (224)
Q Consensus 10 i~aT~N~~K~~E~~~iL~~~~i~~~~~-------~~~-~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvl------aDDS 75 (224)
.+.-+|++-+.|++++|..+|+++... .|+ +++.-.-+-.-|-|.+..-|++.-+.+|.|.+ +.++
T Consensus 173 ~lgF~~~~Dl~Ei~RLl~~~Gi~VN~V~P~ga~~~dl~~L~~Ad~Nv~lYrE~g~~~a~~Ler~fg~Py~~~~PiGv~~T 252 (510)
T CHL00076 173 TLGFHNQHDCRELKRLLQDLGIEINQVIPEGGSVEDLKNLPKAWFNLVPYREVGLMTAKYLEKEFGMPYVSTTPMGIVDT 252 (510)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCHHHH
T ss_conf 56678878899999999975977889814999988884055041888354877899999998873898142048655899
Q ss_pred HHHHHHHHCCCC
Q ss_conf 243434201445
Q gi|254780629|r 76 GLVIDVLDGKPG 87 (224)
Q Consensus 76 GL~vdaL~G~PG 87 (224)
.=||-.|...-|
T Consensus 253 ~~Firel~~llg 264 (510)
T CHL00076 253 AAFIREIQKLLN 264 (510)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999968
No 55
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=40.98 E-value=15 Score=17.89 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 32223323343525899999999999987644
Q gi|254780629|r 192 SATLFSILSTDLLSHRARAFKCFVDNCLRIDE 223 (224)
Q Consensus 192 ~~~~~~~~~~~~iSHR~~Al~kl~~~l~~~~e 223 (224)
+.+.+.+.+...|.-|++|++++++.++.+.+
T Consensus 67 rK~~~~nf~~e~I~~R~~ale~yL~~ll~~p~ 98 (112)
T cd07301 67 RKRLRKNFTAETIAKRSRAFEQFLCHLHSLPE 98 (112)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 65012678999999999999999999957986
No 56
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=40.08 E-value=32 Score=16.08 Aligned_cols=50 Identities=14% Similarity=0.151 Sum_probs=30.8
Q ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 6777999849922799999973007919972444788566667655456778765
Q gi|254780629|r 5 IENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKS 59 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA 59 (224)
=-++|.+.|||+.|+.- |..||++++....+.+ .|.+....|.+--..|-
T Consensus 349 GV~kirLLTNNP~Ki~G----L~GyGLEVVeRVPl~i-~~~~~N~~YL~TK~~km 398 (552)
T PRK09319 349 GIKRLRLLTNNPRKIAG----LGGYGLEVVDRVPLLI-EPNDYNAEYLATKREKL 398 (552)
T ss_pred CCCEEEECCCCCHHHHH----HHHCCCEEEEEECCCC-CCCCCHHHHHHHHHHHH
T ss_conf 99869970599235656----7647977988713458-98801589999999985
No 57
>TIGR00576 dut dUTP diphosphatase; InterPro: IPR008181 Synonym(s): dUTP diphosphatase, Deoxyuridine-triphosphatase. The essential enzyme dUTP pyrophosphatase (3.6.1.23 from EC) is specific for dUTP and is critical for the fidelity of DNA replication and repair. dUTPase hydrolyzes dUTP to dUMP and pyrophosphate, simultaneously reducing dUTP levels and providing the dUMP for dTTP biosynthesis. dUTPase decreases the intracellular concentration of dUPT so that uracil cannot be incorporated into DNA . The crystal structure of human dUTPase reveals that each subunit of the dUTPase trimer folds into an eight-stranded jelly-roll beta barrel, with the C-terminal beta strands interchanged among the subunits. The structure is similar to that of the Escherichia coli enzyme, despite low sequence homology between the two enzymes . Other enzymes like deoxycytidine triphosphate deaminase (dCTP) (3.5.4.13 from EC) that specifically bind uridine also belong to this group suggesting that the signature may recognise a putative uridine-binding motif. Some retroviruses encode dUTPases. Retroviral dUTPase is synthesised as part of POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, dUTPase and RNase H. ; GO: 0016787 hydrolase activity, 0046080 dUTP metabolic process.
Probab=37.47 E-value=35 Score=15.84 Aligned_cols=83 Identities=19% Similarity=0.255 Sum_probs=47.3
Q ss_pred EEEECHHHHHHH---HHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCCCCEEEEEEEECCCCCCCEEEE
Q ss_conf 785201243434---201445143443045788688899999988777-5213567776506899862013234210456
Q gi|254780629|r 70 ALSDDSGLVIDV---LDGKPGIHSARWAESNTGERDFDMAMQKIENAL-RSKFAHDPAFRSAHFISVLSLAWPDGHVENF 145 (224)
Q Consensus 70 vlaDDSGL~vda---L~G~PGvySaR~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f 145 (224)
-++.=|||-+.. +..-||+-=+-|=|+- +.. |.|.- +.......-+|-|..++.=++.- +....
T Consensus 61 ~v~PRSGLA~K~gv~i~n~~GvID~DYRGE~------kV~---L~N~gp~~~f~v~~GdRIAQlv~~~~~~v---~~v~~ 128 (151)
T TIGR00576 61 RVAPRSGLALKHGVTIDNSPGVIDADYRGEI------KVI---LINLGPKEDFTVKKGDRIAQLVVEKIVQV---EFVEV 128 (151)
T ss_pred EEEECCCCCEEEEEEEECCCCEEECCCCCCE------EEE---EEECCCCCCEEECCCCEEEEEEEEEEEEE---EEEEE
T ss_conf 9730441330246899667817817872026------899---98589998678857975776887315689---98620
Q ss_pred EEEEEEEEEECCCCCCCCC
Q ss_conf 4333249982641178857
Q gi|254780629|r 146 SGKVSGIIVWPPRGQLGFG 164 (224)
Q Consensus 146 ~G~~~G~I~~~prG~~GFG 164 (224)
+=..--.+..+.||++|||
T Consensus 129 ~~~~v~~L~~T~RG~GGFG 147 (151)
T TIGR00576 129 EFEEVEELDETERGEGGFG 147 (151)
T ss_pred EEEEEECCCCCCCCCCCCC
T ss_conf 0456404666677588746
No 58
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=36.08 E-value=37 Score=15.71 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=49.5
Q ss_pred CEEEEECCCCC-HH-HHHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCC-CCCCEEEEECHHHHHH-HH
Q ss_conf 77999849922-79-999997300791997244478856666765545677876533113-4563078520124343-42
Q gi|254780629|r 7 NNIVIASHNVD-KI-HEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAK-NAGMPALSDDSGLVID-VL 82 (224)
Q Consensus 7 ~kii~aT~N~~-K~-~E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~-~~~~pvlaDDSGL~vd-aL 82 (224)
+||.|+|-..| .+ ++++.+|...+++++...+.+. +|-+.|..-|+.+.+ ....-++.+-||+=+. +-
T Consensus 1 MkI~igsDHaG~~lK~~i~~~L~~~g~~v~D~~~~~~--------DypD~a~~va~~V~~~~~~~GIliCGtGiG~siaA 72 (141)
T PRK12613 1 MAIILGADAHGNALKELIKSFLQEEGYDIIDVTDINS--------DFIDNTLAVAKAVNEAEGRLGIMVDAYGAGPFMVA 72 (141)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCEEEECCCCCC--------CCCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHE
T ss_conf 9899995872499999999999987998680798888--------88628999999997599865999868885032110
Q ss_pred HCCCCHHHH
Q ss_conf 014451434
Q gi|254780629|r 83 DGKPGIHSA 91 (224)
Q Consensus 83 ~G~PGvySa 91 (224)
|-+|||+.|
T Consensus 73 NK~~GIRAA 81 (141)
T PRK12613 73 TKLKGMVAA 81 (141)
T ss_pred ECCCCEEEE
T ss_conf 078985999
No 59
>pfam10087 DUF2325 Uncharacterized protein conserved in bacteria (DUF2325). Members of this family of hypothetical bacterial proteins have no known function.
Probab=36.03 E-value=37 Score=15.70 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=50.2
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEHH------H--C--CC---CCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 799984992279999997300791997244------4--7--88---566667655456778765331134563078520
Q gi|254780629|r 8 NIVIASHNVDKIHEMDSLIMPLGIMTTSAL------E--L--NL---IIPEETGNSFEENAMIKSLTAAKNAGMPALSDD 74 (224)
Q Consensus 8 kii~aT~N~~K~~E~~~iL~~~~i~~~~~~------~--~--~~---~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDD 74 (224)
+++++-++.+.+..++.+++.+|.+.+... . + .+ +.+.-..+...-|+..+++..++..+.|++--.
T Consensus 1 svLiIGG~~~~~~~~~~~~~~~G~~~~~h~~g~~~~~~~l~~~i~~aDlVI~~td~vsH~~~~~vK~~akk~~~p~v~~~ 80 (96)
T pfam10087 1 SVLIVGGRDDRLGHYRKLLEKYGGEFIVHDGGREKKKKKIPALLKKADLVIVFTDCVSHDAMWRVKEEAKKRGIPVVFSR 80 (96)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 99999585567899999999839989996589873355677505898889997176687999999999998499789976
Q ss_pred -HHHH
Q ss_conf -1243
Q gi|254780629|r 75 -SGLV 78 (224)
Q Consensus 75 -SGL~ 78 (224)
+|+.
T Consensus 81 s~s~~ 85 (96)
T pfam10087 81 SRSLS 85 (96)
T ss_pred CCCHH
T ss_conf 87499
No 60
>pfam11329 DUF3131 Protein of unknown function (DUF3131). This bacterial family of proteins has no known function.
Probab=35.64 E-value=37 Score=15.67 Aligned_cols=25 Identities=16% Similarity=0.336 Sum_probs=15.4
Q ss_pred CCCCCCEEEEECCCCCCHHHCCHHHH
Q ss_conf 88572313665699847776898785
Q gi|254780629|r 161 LGFGYDPIFQPNGYDRTFGEMTEEEK 186 (224)
Q Consensus 161 ~GFGyDpIF~p~g~~kT~aEm~~~eK 186 (224)
..|||-.+| +..|...+.+.-.+-.
T Consensus 304 aAfgw~aL~-~~~Yt~~L~~~v~~l~ 328 (368)
T pfam11329 304 AAFGWWALW-DTPYTDRLRQAVRELY 328 (368)
T ss_pred HHHHHHHHH-CCCHHHHHHHHHHHHC
T ss_conf 988899982-8908999999999844
No 61
>TIGR03474 incFII_RepA incFII family plasmid replication initiator RepA. Members of this protein are the plasmid replication initiator RepA of incFII (plasmid incompatibility group F-II) plasmids. R1 and R100 are plasmids in this group. Immediately upstream of repA is found tap, a leader peptide of about 24 amino acids, often not assigned as a gene in annotated plasmid sequences. Note that other, non-homologous plasmid replication proteins share the gene symbol (repA) and similar names (plasmid replication protein RepA).
Probab=35.55 E-value=29 Score=16.34 Aligned_cols=17 Identities=24% Similarity=0.390 Sum_probs=7.8
Q ss_pred EEECHHHHHHHHHCCCC
Q ss_conf 85201243434201445
Q gi|254780629|r 71 LSDDSGLVIDVLDGKPG 87 (224)
Q Consensus 71 laDDSGL~vdaL~G~PG 87 (224)
|+|+.||.-..=.|-+-
T Consensus 89 LadeCGLsT~S~aGnkS 105 (275)
T TIGR03474 89 LAIECGLATESKSGNLS 105 (275)
T ss_pred HHHHHCCCCCCCCCCCH
T ss_conf 99984874346568831
No 62
>KOG0125 consensus
Probab=31.96 E-value=21 Score=17.18 Aligned_cols=21 Identities=10% Similarity=0.230 Sum_probs=9.5
Q ss_pred EEECCCCCHHHH--HHHHHHHCC
Q ss_conf 998499227999--999730079
Q gi|254780629|r 10 VIASHNVDKIHE--MDSLIMPLG 30 (224)
Q Consensus 10 i~aT~N~~K~~E--~~~iL~~~~ 30 (224)
+-+||=+-+++| ++.+|..+|
T Consensus 99 LhVSNIPFrFRdpDL~aMF~kfG 121 (376)
T KOG0125 99 LHVSNIPFRFRDPDLRAMFEKFG 121 (376)
T ss_pred EEEECCCCCCCCCCHHHHHHHHC
T ss_conf 57645875246800999998517
No 63
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=30.45 E-value=31 Score=16.16 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=17.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 34352589999999999998764
Q gi|254780629|r 200 STDLLSHRARAFKCFVDNCLRID 222 (224)
Q Consensus 200 ~~~~iSHR~~Al~kl~~~l~~~~ 222 (224)
+...|.-|++|+++++.++..+-
T Consensus 75 ~~e~I~eRr~alE~yL~~l~~ip 97 (114)
T cd07300 75 SEEIIAERRVALRDYLTLLYSLR 97 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 98999999999999999996277
No 64
>pfam09826 Beta_propel Beta propeller domain. Members of this family comprise secreted bacterial proteins containing C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=30.22 E-value=39 Score=15.53 Aligned_cols=14 Identities=29% Similarity=0.214 Sum_probs=8.5
Q ss_pred EEEEEEEEEEEEEE
Q ss_conf 04564333249982
Q gi|254780629|r 142 VENFSGKVSGIIVW 155 (224)
Q Consensus 142 ~~~f~G~~~G~I~~ 155 (224)
.....|++.|+|.+
T Consensus 262 ~y~asg~V~G~lln 275 (521)
T pfam09826 262 TYVGSGEVPGRLLN 275 (521)
T ss_pred EEEEEEEEEEEECC
T ss_conf 77789997269867
No 65
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family; InterPro: IPR006349 This family of sequences represent 2-phosphoglycolate phosphatase which is limited to the eukaryotic lineage. PGP is an essential enzyme in the glycolate salvage pathway in higher organisms (photorespiration in plants). Phosphoglycolate results from the oxidase activity of RubisCO in the Calvin cycle when concentrations of carbon dioxide are low relative to oxygen. In mammals, PGP is found in many tissues, notably in red blood cells where P-glycolate is and important activator of the hydrolysis of 2,3-bisphosphoglycerate, a major modifier of the oxygen affinity of hemoglobin. The PGPase enzyme described here is a member of the Haloacid dehalogenase superfamily of hydrolase enzymes. Unlike the bacterial PGP equivalog (IPR006346 from INTERPRO), which is a member of class (subfamily) I, this enzyme is a member of class (subfamily) II . These two enzymes have almost certainly arisen from convergent evolution (although these two ancestors may themselves have diverged from a more distant HAD superfamily progenitor). One of the sequences in the group comes from Chlamydomonas reinhardtii, a photosynthetic alga. The enzyme has been purified and characterised and these data are fully consistent with the assignment of function as a PGPase involved in photorespiration . Another, from Homo sapiens, is supported as a member of the family indirectly. Biochemical characterization of partially purified PGP's from various tissues including red blood cells have been performed while one gene for PGP has been localized to chromosome 16p13.3 . The Homo sapiens sequence maps to chromosome 22. There is indeed a related gene on chromosome 16 (and it is expressed, since EST's are found) which shows 46 0dentity and 59603b08ositives by BLAST2 (E=1e-66). Presumably, these two genes are isoforms and have the same catalytic function while being expressed in different tissues and may be differently regulated. The sequence from Caenorhabditis elegans, is only supported by sequence similarity. This family is closely related to a family of bacterial sequences including the Escherichia coli NagD and Bacillus subtilus AraL genes which are characterised by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The Chlamydomonas reinhardtii PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this family have been annotated as pNPPases due to this association.; GO: 0016791 phosphoric monoester hydrolase activity, 0008152 metabolic process.
Probab=27.40 E-value=40 Score=15.50 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=23.2
Q ss_pred CCCCEEEEECCCCCHHH-HHHHHHHHCCCEE
Q ss_conf 56777999849922799-9999730079199
Q gi|254780629|r 4 LIENNIVIASHNVDKIH-EMDSLIMPLGIMT 33 (224)
Q Consensus 4 ~~~~kii~aT~N~~K~~-E~~~iL~~~~i~~ 33 (224)
.+.|+++|+|||.-|-+ +...-|..+|+..
T Consensus 32 ~~gK~~~fvtNNstksRa~ya~kfa~LG~n~ 62 (288)
T TIGR01452 32 KAGKKVLFVTNNSTKSRAEYAKKFAKLGYNS 62 (288)
T ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 4598799981686410489999997517760
No 66
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=27.38 E-value=27 Score=16.47 Aligned_cols=11 Identities=45% Similarity=1.023 Sum_probs=7.8
Q ss_pred CCEEEEECCCC
Q ss_conf 23136656998
Q gi|254780629|r 165 YDPIFQPNGYD 175 (224)
Q Consensus 165 yDpIF~p~g~~ 175 (224)
+|.||||.|+|
T Consensus 296 kDaVFIPaGWD 306 (490)
T pfam05783 296 KDAVFIPAGWD 306 (490)
T ss_pred CCCEEECCCCC
T ss_conf 35357327877
No 67
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=25.99 E-value=55 Score=14.69 Aligned_cols=50 Identities=24% Similarity=0.236 Sum_probs=31.8
Q ss_pred CEEEEEEEECCCCCCCEEEEEEEEEEEEEEC-CCCCCCCCCCEEEEECCCCCCHHHC
Q ss_conf 0689986201323421045643332499826-4117885723136656998477768
Q gi|254780629|r 126 SAHFISVLSLAWPDGHVENFSGKVSGIIVWP-PRGQLGFGYDPIFQPNGYDRTFGEM 181 (224)
Q Consensus 126 ~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~-prG~~GFGyDpIF~p~g~~kT~aEm 181 (224)
.+.|--++.+ |.-.++-||+++-.|... ..+.-| |-||||.|..-+|+--
T Consensus 109 ~~tf~wtl~y---De~d~VlEGrL~V~~~g~tv~a~aG---DvifiPKgssIefst~ 159 (176)
T COG4766 109 NTTFPWTLNY---DEIDYVLEGRLHVRIDGRTVIAGAG---DVIFIPKGSSIEFSTT 159 (176)
T ss_pred CCCCCCEECC---CCEEEEEEEEEEEEECCCEEECCCC---CEEEECCCCEEEEECC
T ss_conf 5657624134---5155898515999973976741787---5799518973898436
No 68
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=25.29 E-value=57 Score=14.61 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=42.9
Q ss_pred CCEEEEEEEECCCCCCCEE--EEEEEEEEEEEECCC-CCCCCCCCEEEEECCCCCCHHHCCHHHH
Q ss_conf 5068998620132342104--564333249982641-1788572313665699847776898785
Q gi|254780629|r 125 RSAHFISVLSLAWPDGHVE--NFSGKVSGIIVWPPR-GQLGFGYDPIFQPNGYDRTFGEMTEEEK 186 (224)
Q Consensus 125 R~A~f~~~~~~~~~~~~~~--~f~G~~~G~I~~~pr-G~~GFGyDpIF~p~g~~kT~aEm~~~eK 186 (224)
-+| |.||++-.++.+++. ...|++.|.|+...+ .+.| -|-+|=+...-.+.+.++-.++.
T Consensus 308 ITa-fYTVLveGDD~~dPiaD~~RsILDGHIvLsR~LA~~g-hyPaIdvl~SiSRvm~~i~~~~h 370 (441)
T COG1157 308 ITA-FYTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAG-HYPAIDVLASISRVMPQIVSEEH 370 (441)
T ss_pred EEE-EEEEEEECCCCCCCHHHHHHHHCCCEEEEEHHHHHCC-CCCCCCHHHHHHHHHHHCCCHHH
T ss_conf 789-9999850688888504566642265289738688559-99974467778777664089999
No 69
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=25.12 E-value=57 Score=14.60 Aligned_cols=82 Identities=15% Similarity=0.104 Sum_probs=54.7
Q ss_pred CEEEEECCCCC-HHH-HHHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECHHHHHH-HH
Q ss_conf 77999849922-799-999973007919972444788566667655456778765331134-563078520124343-42
Q gi|254780629|r 7 NNIVIASHNVD-KIH-EMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN-AGMPALSDDSGLVID-VL 82 (224)
Q Consensus 7 ~kii~aT~N~~-K~~-E~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~vd-aL 82 (224)
+||++++-..| .++ ++...|...+++++.+- .... +...+|-+.|..-|+.+.+. ...-++..-||.=+. +-
T Consensus 1 MkI~igsDHaG~~lK~~l~~~L~~~g~~v~D~G---~~~~-~~~~DYpd~a~~va~~V~~~~~~~GIliCGtG~G~siaA 76 (149)
T PRK05571 1 MKIAIGSDHAGFELKEEIIEHLEEKGHEVIDLG---PDSY-DASVDYPDFAIKVAEAVVAGEADRGILICGTGIGMSIAA 76 (149)
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHCCCEEEECC---CCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH
T ss_conf 979998587279999999999997899899769---9988-778883899999999996699637999847867788886
Q ss_pred HCCCCHHHHH
Q ss_conf 0144514344
Q gi|254780629|r 83 DGKPGIHSAR 92 (224)
Q Consensus 83 ~G~PGvySaR 92 (224)
|-+|||+.|-
T Consensus 77 NK~~GIRAal 86 (149)
T PRK05571 77 NKVKGIRAAL 86 (149)
T ss_pred CCCCCEEEEE
T ss_conf 0789869998
No 70
>pfam05841 Apc15p Apc15p protein. The anaphase-promoting complex (APC) is a conserved multi-subunit ubiquitin ligase required for the degradation of key cell cycle regulators Members of this family are components of the anaphase-promoting complex homologous to Apc15p.
Probab=25.11 E-value=36 Score=15.75 Aligned_cols=51 Identities=18% Similarity=0.059 Sum_probs=21.7
Q ss_pred ECCCCCHHHHHHHHHHHCCCEEEEHHH--CCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 849922799999973007919972444--788566667655456778765331
Q gi|254780629|r 12 ASHNVDKIHEMDSLIMPLGIMTTSALE--LNLIIPEETGNSFEENAMIKSLTA 62 (224)
Q Consensus 12 aT~N~~K~~E~~~iL~~~~i~~~~~~~--~~~~~peE~g~tf~eNA~~KA~~~ 62 (224)
+|.-.+|..|+......+.-.....+. ...+-|.=-+.|..+...++++.-
T Consensus 23 ~~~~~~k~~e~~m~~~e~~~~~~~IR~lG~~~irPiGv~kTM~e~~~~~~q~R 75 (151)
T pfam05841 23 PSMKELKKEEVLMLTQELAHRLEKIRKLGWRTIRPIGVNKTMQELLDLRSQER 75 (151)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 33345679999999999998999999727442564130176999999999999
No 71
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=24.62 E-value=48 Score=15.06 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCHHHH-HHHHHHHCC
Q ss_conf 67779998499227999-999730079
Q gi|254780629|r 5 IENNIVIASHNVDKIHE-MDSLIMPLG 30 (224)
Q Consensus 5 ~~~kii~aT~N~~K~~E-~~~iL~~~~ 30 (224)
...+++|.|||+.+..+ +.+-|..++
T Consensus 39 ~g~~~iflTNn~~~s~~~~~~~L~~~~ 65 (269)
T COG0647 39 AGKPVIFLTNNSTRSREVVAARLSSLG 65 (269)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 699399995899899899999998626
No 72
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit; InterPro: IPR012792 CoA-transferases catalyse the reversible transfer of of coenzyme A from CoA-thioesters to free acids, and can be divided into three families . Family I includes transferases for 3-oxoacids (2.8.3.5 from EC, 2.8.3.6 from EC), short-chain fatty acids (2.8.3.8 from EC, 2.8.3.9 from EC) and glutaconate (2.8.3.12 from EC). Most of the family I enzymes use acetyl-CoA or succinyl-CoA as CoA donors, and are composed of two separate polypeptides, subunits A and B, which generally aggregate as heterodimers or heterotetramers. The eukaryotic enzymes, however, are generally composed of a single two-domain polypetide representing a fusion of the A and B subunits. The transfer of CoA from one substrate to another occurs via a ping pong mechanism which involves the formation of thioester bond between CoA and a conserved glutamate residue at the active site of the enzyme . This entry represents the CoA-binding A subunit of family I CoA-transferases. This domain forms a three-layer alpha-beta-alpha sandwich where the central layer is an all parallel beta-sheet, against which helices pack from both sides , . The active site is thought to be located at the interface of the A and B subunits and formed by loops from both subunits.; GO: 0008410 CoA-transferase activity.
Probab=24.38 E-value=37 Score=15.70 Aligned_cols=34 Identities=35% Similarity=0.706 Sum_probs=28.6
Q ss_pred EEEEEEEEEECCCCC-------CCCCCCEEEEECCCCCCHHHC
Q ss_conf 433324998264117-------885723136656998477768
Q gi|254780629|r 146 SGKVSGIIVWPPRGQ-------LGFGYDPIFQPNGYDRTFGEM 181 (224)
Q Consensus 146 ~G~~~G~I~~~prG~-------~GFGyDpIF~p~g~~kT~aEm 181 (224)
.|.++=+++ |+|+ .|-|--++|-|.||.-.+||=
T Consensus 93 aG~ieLElV--PQG~LAeRi~AAG~Glga~fTPTGYGT~LAeG 133 (222)
T TIGR02429 93 AGKIELELV--PQGTLAERIRAAGAGLGAFFTPTGYGTELAEG 133 (222)
T ss_pred CCCEEEEEE--CCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 496168860--78648999986148876444873211101167
No 73
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=24.25 E-value=59 Score=14.50 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHCCCEEEEHHHCCCCCCC--------------CCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHH
Q ss_conf 7999999730079199724447885666--------------67655456778765331134563078520124343
Q gi|254780629|r 18 KIHEMDSLIMPLGIMTTSALELNLIIPE--------------ETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVID 80 (224)
Q Consensus 18 K~~E~~~iL~~~~i~~~~~~~~~~~~pe--------------E~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vd 80 (224)
=++|++..+...|++++...-.+..+.+ ..-+.....+..-....++.-+.|++++|+++.-.
T Consensus 176 l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i~s~~~~l~~~a~~~kiPli~sd~~~V~~ 252 (322)
T COG2984 176 LVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLIVSAIESLLQVANKAKIPLIASDTSSVKE 252 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCEECCCHHHHHC
T ss_conf 99999999987798899983476320089999734787679986606778889999999887089735477788766
No 74
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=23.83 E-value=60 Score=14.45 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=35.1
Q ss_pred HHHHCCCEEEEHHHC----CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE-CHHHHHHHHH
Q ss_conf 730079199724447----8856666765545677876533113456307852-0124343420
Q gi|254780629|r 25 LIMPLGIMTTSALEL----NLIIPEETGNSFEENAMIKSLTAAKNAGMPALSD-DSGLVIDVLD 83 (224)
Q Consensus 25 iL~~~~i~~~~~~~~----~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaD-DSGL~vdaL~ 83 (224)
+.+..|.+.+-.+.. .+-.|.-...|+.|+ +.-++.+...+.+||++| |||.=- ++|
T Consensus 33 la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~-~~~vrrI~~a~~lPv~vD~dtGfG~-~~n 94 (289)
T COG2513 33 LAERAGFKALYLSGAGVAASLGLPDLGITTLDEV-LADARRITDAVDLPVLVDIDTGFGE-ALN 94 (289)
T ss_pred HHHHCCCEEEEECCHHHHHHCCCCCCCCCCHHHH-HHHHHHHHHHCCCCEEEECCCCCCC-HHH
T ss_conf 9997697489725488898617986341659999-9999999865278768865678873-889
No 75
>PRK13750 replication protein; Provisional
Probab=23.82 E-value=55 Score=14.68 Aligned_cols=13 Identities=23% Similarity=0.230 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 4567787653311
Q gi|254780629|r 51 FEENAMIKSLTAA 63 (224)
Q Consensus 51 f~eNA~~KA~~~~ 63 (224)
|-.-|+.||...-
T Consensus 30 Fi~~aM~kA~~~~ 42 (285)
T PRK13750 30 FCRKLMEKAVGFT 42 (285)
T ss_pred HHHHHHHHHHCCC
T ss_conf 7999999865437
No 76
>pfam09117 MiAMP1 MiAMP1. MiAMP1 is a highly basic protein from the nut kernel of Macadamia integrifolia which inhibits the growth of several microbial plant pathogens in vitro while having no effect on mammalian or plant cells. It consists of eight beta-strands which are arranged in two Greek key motifs. These Greek key motifs then associate to form a Greek key beta-barrel.
Probab=23.63 E-value=36 Score=15.75 Aligned_cols=14 Identities=21% Similarity=0.465 Sum_probs=11.0
Q ss_pred CCCCCCCCCEEEEE
Q ss_conf 11788572313665
Q gi|254780629|r 158 RGQLGFGYDPIFQP 171 (224)
Q Consensus 158 rG~~GFGyDpIF~p 171 (224)
+.-++|||-+|||-
T Consensus 65 qaC~~FGWkS~fIq 78 (79)
T pfam09117 65 QACNPFGWKSFFIQ 78 (79)
T ss_pred CCCCCCCCEEEEEE
T ss_conf 12457763478861
No 77
>pfam02502 LacAB_rpiB Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).
Probab=22.45 E-value=64 Score=14.29 Aligned_cols=80 Identities=19% Similarity=0.228 Sum_probs=53.1
Q ss_pred EEEEEC-CCCCHHHH-HHHHHHHCCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC-CCCEEEEECHHHHHH-HHH
Q ss_conf 799984-99227999-99973007919972444788566667655456778765331134-563078520124343-420
Q gi|254780629|r 8 NIVIAS-HNVDKIHE-MDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN-AGMPALSDDSGLVID-VLD 83 (224)
Q Consensus 8 kii~aT-~N~~K~~E-~~~iL~~~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~-~~~pvlaDDSGL~vd-aL~ 83 (224)
||.+++ +.--.++| ++.+|...+++++.. .... . +..+|-+.|..-|+.+.+. ...-++..-||.=+. +.|
T Consensus 1 KI~i~sDhaG~~lK~~l~~~L~~~g~~v~D~---G~~~-~-~~~dYpd~a~~va~~v~~~~~~~GIliCgsG~G~~iaAN 75 (140)
T pfam02502 1 KIAIGSDHAGFELKEAIKEYLKAKGYEVIDV---GTYS-G-ESVDYPDYAIKVAEAVASGEADRGILICGTGIGMSIAAN 75 (140)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHCCCEEEEC---CCCC-C-CCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHC
T ss_conf 9899838727999999999999879989982---8898-9-988748899999999845884168998478788999871
Q ss_pred CCCCHHHHH
Q ss_conf 144514344
Q gi|254780629|r 84 GKPGIHSAR 92 (224)
Q Consensus 84 G~PGvySaR 92 (224)
-+|||+.+.
T Consensus 76 K~~gIraa~ 84 (140)
T pfam02502 76 KVPGIRAAL 84 (140)
T ss_pred CCCCEEEEE
T ss_conf 799869998
No 78
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=22.18 E-value=54 Score=14.71 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=17.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 352589999999999998764
Q gi|254780629|r 202 DLLSHRARAFKCFVDNCLRID 222 (224)
Q Consensus 202 ~~iSHR~~Al~kl~~~l~~~~ 222 (224)
.-|..|.++|++++..+....
T Consensus 77 ~fie~Rr~~Le~fL~~l~~~p 97 (112)
T cd07279 77 ELIAERSRAFEQFLGHILSIP 97 (112)
T ss_pred HHHHHHHHHHHHHHHHHHCCH
T ss_conf 999999999999999996697
No 79
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=21.80 E-value=15 Score=17.89 Aligned_cols=104 Identities=23% Similarity=0.215 Sum_probs=72.6
Q ss_pred CC-CCCCCC---HHHHHHHHHHHHCCCCCCEEEEECHH-------------------------HHHHHHHCCCCHHHHHH
Q ss_conf 66-667655---45677876533113456307852012-------------------------43434201445143443
Q gi|254780629|r 43 IP-EETGNS---FEENAMIKSLTAAKNAGMPALSDDSG-------------------------LVIDVLDGKPGIHSARW 93 (224)
Q Consensus 43 ~p-eE~g~t---f~eNA~~KA~~~~~~~~~pvlaDDSG-------------------------L~vdaL~G~PGvySaR~ 93 (224)
++ .+.+.+ ..++|..--.+|...-...||+|=.| |.|||+-|.=.|-+|+-
T Consensus 163 f~h~~~~~~p~~Pv~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~~LM~EL~~iK~~~nP~EiLlVvDaM~GQdAvn~A~~ 242 (439)
T TIGR00959 163 FAHLGKGQSPDDPVEIARQALEEAKENGFDVVIVDTAGRLQIDEELMEELAEIKEILNPDEILLVVDAMTGQDAVNTAKT 242 (439)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHCCHHHHHHHHHH
T ss_conf 10047888988778999999999997489789972675125559999999999888688705412201021699999986
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEEC
Q ss_conf 0457886888999999887775213567776506899862013234210456433324998264117885723136656
Q gi|254780629|r 94 AESNTGERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPN 172 (224)
Q Consensus 94 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~R~A~f~~~~~~~~~~~~~~~f~G~~~G~I~~~prG~~GFGyDpIF~p~ 172 (224)
|.+..|-.+. ++..+.+ .||-=.++++-.=-|.|+.|.|.=+..=-.+ .|+|+
T Consensus 243 F~e~lgltG~------vltK~DG---------DaRGGAALS~~~~tg~PIKFiG~GEK~~dLe-----------~FhP~ 295 (439)
T TIGR00959 243 FNERLGLTGV------VLTKLDG---------DARGGAALSVRSVTGKPIKFIGVGEKIEDLE-----------PFHPD 295 (439)
T ss_pred HCCCCCCCEE------EEECCCC---------CCHHHHHHHHHHHHCCCEEEEECCCCCCCCC-----------CCCHH
T ss_conf 3660013547------8854756---------6057899999999689618884177723312-----------46747
No 80
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=21.39 E-value=49 Score=15.00 Aligned_cols=17 Identities=12% Similarity=0.173 Sum_probs=10.4
Q ss_pred EEECCCCCH--HHHHHHHH
Q ss_conf 998499227--99999973
Q gi|254780629|r 10 VIASHNVDK--IHEMDSLI 26 (224)
Q Consensus 10 i~aT~N~~K--~~E~~~iL 26 (224)
++.|+.=.| ++|.+++-
T Consensus 98 y~~tG~WS~kA~~EA~k~~ 116 (364)
T PRK12462 98 YVTTGYWSRKAIGEASRVA 116 (364)
T ss_pred EEECCHHHHHHHHHHHHHC
T ss_conf 9962786899999999758
No 81
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II; InterPro: IPR001874 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. Class-II enzymes are homododecameric enzymes of about 17 kDa. They are found in some bacteria such as actinomycetales , and some fungi where they act in a catabolic pathway that allows the use of quinic acid as a carbon source.; GO: 0003855 3-dehydroquinate dehydratase activity, 0009073 aromatic amino acid family biosynthetic process.
Probab=21.24 E-value=68 Score=14.14 Aligned_cols=49 Identities=24% Similarity=0.298 Sum_probs=39.3
Q ss_pred CCEEEEEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 210456433324998264117885723136656998477768987850121232223323343525899999999999
Q gi|254780629|r 140 GHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDN 217 (224)
Q Consensus 140 ~~~~~f~G~~~G~I~~~prG~~GFGyDpIF~p~g~~kT~aEm~~~eKn~~~~~~~~~~~~~~~~iSHR~~Al~kl~~~ 217 (224)
-++.+|+---+|.|++.-....|=+||+|-|=+| .+||=+-|+|.=+..
T Consensus 44 ~e~~~fQSN~EG~L~d~Ih~a~g~~~~GiviNpg-----------------------------A~THtSvAlRDA~~~ 92 (144)
T TIGR01088 44 VEVEFFQSNSEGELIDKIHEALGQDYDGIVINPG-----------------------------AYTHTSVALRDALAA 92 (144)
T ss_pred EEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCC-----------------------------CCCHHHHHHHHHHHH
T ss_conf 7898730443578999999872388653787873-----------------------------101367999999997
No 82
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=21.13 E-value=69 Score=14.13 Aligned_cols=51 Identities=18% Similarity=0.250 Sum_probs=31.4
Q ss_pred HHHCCCEEEEHHHC----CCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEE-CHHH
Q ss_conf 30079199724447----8856666765545677876533113456307852-0124
Q gi|254780629|r 26 IMPLGIMTTSALEL----NLIIPEETGNSFEENAMIKSLTAAKNAGMPALSD-DSGL 77 (224)
Q Consensus 26 L~~~~i~~~~~~~~----~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaD-DSGL 77 (224)
+...|.+.+-.... ....|.....++.+.. .-++.+.+.+..|+++| |+|.
T Consensus 25 ~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~-~~~~~I~~a~~lPv~aD~d~Gy 80 (243)
T cd00377 25 AERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVL-AAVRRIARAVDLPVIADADTGY 80 (243)
T ss_pred HHHCCCCEEEECHHHHHHHCCCCCCCCCCHHHHH-HHHHHHHHHCCCCEEEECCCCC
T ss_conf 9985999998248999997599987879878999-9999999616998899876677
No 83
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=21.00 E-value=64 Score=14.32 Aligned_cols=19 Identities=26% Similarity=0.739 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q ss_conf 5258999999999999876
Q gi|254780629|r 203 LLSHRARAFKCFVDNCLRI 221 (224)
Q Consensus 203 ~iSHR~~Al~kl~~~l~~~ 221 (224)
.|.+|.++|++|+..+...
T Consensus 78 fie~Rr~~Le~FL~~i~~h 96 (112)
T cd06867 78 IIERRKRMLQRFLNRCLQH 96 (112)
T ss_pred HHHHHHHHHHHHHHHHHCC
T ss_conf 9999999999999999729
No 84
>KOG3135 consensus
Probab=20.23 E-value=51 Score=14.88 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=34.0
Q ss_pred CCCEEEEHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHH-HCCC
Q ss_conf 791997244478856666765545677876533113456307852012434342-0144
Q gi|254780629|r 29 LGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLVIDVL-DGKP 86 (224)
Q Consensus 29 ~~i~~~~~~~~~~~~peE~g~tf~eNA~~KA~~~~~~~~~pvlaDDSGL~vdaL-~G~P 86 (224)
.|++...- +-.+-.++|+ +.+-.+.|-.+.-+-...|++-.|+=.+-|++ =|+|
T Consensus 24 kGie~a~g-eA~i~qVpEt---l~~evl~km~a~pkp~d~piit~~~L~e~D~flFG~P 78 (203)
T KOG3135 24 KGIESAGG-EATIYQVPET---LSEEVLEKMKAPPKPSDYPIITPETLTEYDGFLFGFP 78 (203)
T ss_pred HHHHCCCC-EEEEEECCCC---CCHHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEECCC
T ss_conf 00330698-1689976551---6899999724899975677258889865130365165
Done!