RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide
triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
(224 letters)
>gnl|CDD|178879 PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.
Length = 196
Score = 259 bits (665), Expect = 4e-70
Identities = 89/213 (41%), Positives = 118/213 (55%), Gaps = 21/213 (9%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
IV+ASHN K+ E+ +L+ P GI S EL + PEETG +F ENA+IK+ AAK G+
Sbjct: 3 IVLASHNAGKLRELKALLAPFGIEVVSQGELGVPEPEETGTTFVENALIKARHAAKATGL 62
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
PAL+DDSGL +D L G PG++SAR+A +K+ L+ D R A
Sbjct: 63 PALADDSGLCVDALGGAPGVYSARYAGEG---ASDAANNEKLLEELKGVPDED---RRAR 116
Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188
F+ VL L PD G+ G I+W PRG+ GFGYDPIF P GY +TF E+T EEKN
Sbjct: 117 FVCVLVLVRPDPTPLVAEGRWEGEILWEPRGENGFGYDPIFFPPGYGKTFAELTPEEKNA 176
Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVDNCLRI 221
+SHR +A K ++ +
Sbjct: 177 ---------------ISHRGKALKLLLEALREL 194
>gnl|CDD|184835 PRK14822, PRK14822, nucleoside-triphosphatase; Provisional.
Length = 200
Score = 165 bits (419), Expect = 1e-41
Identities = 74/206 (35%), Positives = 106/206 (51%), Gaps = 24/206 (11%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALEL-NLIIPEETGNSFEENAMIKSLTAAKNAG 67
IVIA+ N K+ E + I S + + EETG +FEENA++K+ AAK
Sbjct: 4 IVIATKNKGKVREFKEIFEKFDIEVKSLADFPPIPEVEETGTTFEENAILKAEAAAKALN 63
Query: 68 MPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMA-MQKIENALRSKFAHDPAFRS 126
P ++DDSGL +D L+G PG++SAR+A GE D A +K+ L R+
Sbjct: 64 KPVIADDSGLEVDALNGAPGVYSARYA----GEAKDDAANNEKLLKELGGVPFEK---RT 116
Query: 127 AHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEK 186
A F V+++A+P G + G G I+ PRG+ GFGYDP+F +T E++ EEK
Sbjct: 117 ARFHCVIAVAFPGGETKTVEGTCEGEILEEPRGENGFGYDPLFYVPEKGKTMAELSSEEK 176
Query: 187 NGGIDSATLFSILSTDLLSHRARAFK 212
N +SHR +A K
Sbjct: 177 NA---------------ISHRGKALK 187
>gnl|CDD|161677 TIGR00042, TIGR00042, non-canonical purine NTP pyrophosphatase,
rdgB/HAM1 family. Saccharomyces cerevisiae HAM1
protects against the mutagenic effects of the base
analog 6-N-hydroxylaminopurine, which can be a natural
product of monooxygenase activity on adenine.
Methanococcus jannaschii MJ0226 and E. coli RdgB are
also characterized as pyrophosphatases active against
non-standard purines NTPs. E. coli RdgB appears to act
by intercepting non-canonical deoxyribonucleotide
triphosphates from replication precursor pools.
Length = 184
Score = 159 bits (403), Expect = 8e-40
Identities = 80/207 (38%), Positives = 112/207 (54%), Gaps = 30/207 (14%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
IV A+ N K+ E+ S++ LG L+L PEETG +FEENA++K+ AAK
Sbjct: 2 IVFATGNPGKLKEVQSILSDLGDNEIEQLDLGY--PEETGLTFEENALLKAKHAAKILNK 59
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQK-IENALRSKFAHDPAFRSA 127
P +++DSGL +D L+G PGI+SAR+ ++ G + + + + +EN R A
Sbjct: 60 PVIAEDSGLFVDALNGFPGIYSARYQGTDIGNLEKILKLLEGVEN------------RQA 107
Query: 128 HFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKN 187
+F+ V+ P+G F G V G I PRG GFGYDPIF P +TF E+T EEKN
Sbjct: 108 YFVCVIGYCDPNGEPLVFEGIVKGKITREPRGTYGFGYDPIFIPPEEGKTFAELTTEEKN 167
Query: 188 GGIDSATLFSILSTDLLSHRARAFKCF 214
+SHR +AFK F
Sbjct: 168 K---------------ISHRGKAFKKF 179
>gnl|CDD|184836 PRK14823, PRK14823, putative deoxyribonucleoside-triphosphatase;
Provisional.
Length = 191
Score = 147 bits (372), Expect = 3e-36
Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 34/213 (15%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLI-----IPEETGNSFEENAMIKSLTAA 63
+V A++N K+ E+ S I+P I L L+ I IPE T ++ E NA++K+
Sbjct: 3 LVFATNNKHKLEEIRS-ILPEKI---ELLSLSDIGCHEDIPE-TADTLEGNALLKAEYVY 57
Query: 64 KNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPA 123
K G +DD+GL ++ L+G PG++SAR+A GE + + M+K+ L K
Sbjct: 58 KKYGYDCFADDTGLEVEALNGAPGVYSARYAG---GEHNAEANMRKLLEELEGK-----D 109
Query: 124 FRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTE 183
R A F +V++L DG F G + G I+ RG GFGYDPIF P GYD+TF E+
Sbjct: 110 NRKAQFRTVIALIL-DGKEHLFEGIIKGEIIKEKRGDSGFGYDPIFVPEGYDKTFAELGL 168
Query: 184 EEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
E KN +SHRA+A + +D
Sbjct: 169 EIKNQ---------------ISHRAKAVQKLID 186
>gnl|CDD|184837 PRK14824, PRK14824, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 201
Score = 119 bits (301), Expect = 4e-28
Identities = 68/206 (33%), Positives = 108/206 (52%), Gaps = 21/206 (10%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
I++A+ N K+ E+ L+ LGI S + I EE G +F ENA +K+ A+ +
Sbjct: 3 ILLATTNEGKVREIKRLLSDLGIEVLSPDKK--IEVEEDGETFLENAYLKARAYAEFYKI 60
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRS--KFAHDPAFRS 126
P L+DDSGL + L+G PG++S+R+ + G ++ ++ K E +R + R
Sbjct: 61 PVLADDSGLEVPALEGYPGVYSSRFYQIEFGGKE-EVVESKDEANIRKLLRLLEGKQNRK 119
Query: 127 AHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEK 186
A F++ + L + D + G+ G I PRG GFGYDP+F P GY++T E++ EEK
Sbjct: 120 ARFVAFVVLYFGDWGIWT-EGECRGKIAEEPRGSGGFGYDPVFIPEGYNKTMAELSPEEK 178
Query: 187 NGGIDSATLFSILSTDLLSHRARAFK 212
N +SHR +A +
Sbjct: 179 NK---------------ISHRGKAVR 189
>gnl|CDD|184834 PRK14821, PRK14821, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 184
Score = 119 bits (301), Expect = 5e-28
Identities = 68/208 (32%), Positives = 95/208 (45%), Gaps = 32/208 (15%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
I A+ N K+ E ++ PLGI ++ + PE ++ EE A +
Sbjct: 3 IYFATGNKGKVEEAKIILKPLGI---EVEQIKIEYPEIQADTLEEVAAFGAKWVYNKLNR 59
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
P + +DSGL I+ L+G PG +SA + G ++ EN R A+
Sbjct: 60 PVIVEDSGLFIEALNGFPGPYSA-FVYKTLGNEGILKLLEGEEN------------RRAY 106
Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188
F SV+ G + F+G V G I RG+ GFGYDPIF P G ++TF EMT EEKN
Sbjct: 107 FKSVIGY-CDPGGEKLFTGIVEGKIANEIRGKGGFGYDPIFIPEGEEKTFAEMTTEEKNK 165
Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVD 216
+SHR RAF F +
Sbjct: 166 ---------------ISHRKRAFDEFKE 178
>gnl|CDD|173287 PRK14826, PRK14826, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 222
Score = 114 bits (288), Expect = 2e-26
Identities = 69/220 (31%), Positives = 106/220 (48%), Gaps = 36/220 (16%)
Query: 9 IVIASHNVDKIHEMDSLIMPL--GIMTTSALELNLIIP-EETGNSFEENAMIK-----SL 60
IV+A+ N DK+ E+ L+ + S +L + + EET + E NA++K L
Sbjct: 11 IVLATGNRDKVRELRPLLEHISPLFSVRSLADLGVEVDIEETEETLEGNALLKADAIFEL 70
Query: 61 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGE-RDFDMAMQKIENALRSKFA 119
+ + + AL+DD+GL +D L G PG++SAR+A GE ++ ++ + + + K
Sbjct: 71 LSDRFPFLIALADDTGLEVDALGGAPGVYSARFAPVPEGEKPTYEDNVRHLLSEMEGK-- 128
Query: 120 HDPAFRSAHFISVLSL-------AWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPN 172
RSA F +V++L E G V G I +G GFGYDPIF+
Sbjct: 129 ---TERSARFRTVIALKGRLPGKNGAFEFEETAEGVVEGSITTEKKGDGGFGYDPIFRVE 185
Query: 173 GYDRTFGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFK 212
+TF EM+ EEKN +SHRA A +
Sbjct: 186 ATGKTFAEMSTEEKNT---------------ISHRALAVQ 210
>gnl|CDD|179431 PRK02491, PRK02491, putative deoxyribonucleotide triphosphate
pyrophosphatase/unknown domain fusion protein; Reviewed.
Length = 328
Score = 103 bits (258), Expect = 5e-23
Identities = 72/214 (33%), Positives = 96/214 (44%), Gaps = 39/214 (18%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELN----LIIPEETGNSFEENAMIKSLTAAK 64
I+IA+ N K E L LG + LN L ETG +FEENA +K+ T ++
Sbjct: 130 ILIATRNEGKTKEFRKLFGKLGYKVEN---LNDYPDLPEVAETGMTFEENARLKAETISR 186
Query: 65 NAGMPALSDDSGLVIDVLDGKPGIHSARWA------ESNTGERDFDMAMQKIENALRSKF 118
G L+DDSGL +D L G PG+ SAR++ N + ++AM
Sbjct: 187 LTGKMVLADDSGLKVDALGGLPGVWSARFSGPDATDAENNAKLLHELAM----------- 235
Query: 119 AHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTF 178
D RSA F + L +A P+ G I P+G+ GFGYDP+F R
Sbjct: 236 VFDLKDRSAQFHTTLVVAAPNKDSLVVEADWPGYIATEPKGENGFGYDPLFLVGETGRHA 295
Query: 179 GEMTEEEKNGGIDSATLFSILSTDLLSHRARAFK 212
E+T EEKN LSHR +A K
Sbjct: 296 AELTAEEKNQ---------------LSHRGQAVK 314
>gnl|CDD|173286 PRK14825, PRK14825, putative deoxyribonucleotide triphosphate
pyrophosphatase; Provisional.
Length = 199
Score = 85.0 bits (210), Expect = 2e-17
Identities = 66/213 (30%), Positives = 102/213 (47%), Gaps = 39/213 (18%)
Query: 12 ASHNVDKIHEMDSLI-MPLGIMTTSALELNLIIPE-----ETGNSFEENAMIK--SLTAA 63
A+ N++KI+E+ ++ +P + + IP+ ETG +F+EN+++K +L
Sbjct: 7 ATTNINKINEVKQILDIP---------NIKIEIPQNFDIKETGKTFKENSLLKAKALFEI 57
Query: 64 KNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPA 123
N P S+DSGL I+ L+ +PGI+S R+ + G++ +N L +
Sbjct: 58 LNNKQPVFSEDSGLCIEALNLEPGIYSKRYDQYKLGKK----LSTNEKNHLIIDLMKNEK 113
Query: 124 FRSAHFISVLSLAWPDGHVENFSGKVSGIIVWP--PRGQLGFGYDPIFQPNGYDRTFGEM 181
R+A+FI +S DG + NF G + G I + GFGYDPIF R E+
Sbjct: 114 NRTAYFICNISYISKDGTILNFEGIIKGTIALSIDDYKKNGFGYDPIFLTKNNKR-LSEL 172
Query: 182 TEEEKNGGIDSATLFSILSTDLLSHRARAFKCF 214
T EEKN +SHR AF F
Sbjct: 173 TLEEKNK---------------ISHRGIAFDKF 190
>gnl|CDD|183023 PRK11186, PRK11186, carboxy-terminal protease; Provisional.
Length = 667
Score = 27.6 bits (62), Expect = 2.6
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 44 PEETGNSFEENAM-IKSLTAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERD 102
P ETG SFE+NA+ S+ AA L+ ++ L K H+AR A+ + +
Sbjct: 530 PTETGESFEDNALPWDSIPAATYVKSGDLTA----LVPELLKK---HNARIAK----DPE 578
Query: 103 FDMAMQKIE 111
F + I
Sbjct: 579 FQYINEDIA 587
>gnl|CDD|181432 PRK08453, fliD, flagellar capping protein; Validated.
Length = 673
Score = 27.5 bits (61), Expect = 3.1
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 30 GIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKN--AGMPALSDDSG-LVIDVLDGKP 86
G+++ ++L+L + GN+ EENA ++ A N AG+ A + G LVI+ G
Sbjct: 333 GVISIGGIKLDLSALTKEGNTSEENA--DAIAQAINAKAGLYAFKNAEGKLVINSKTGMV 390
Query: 87 GIHSA 91
I
Sbjct: 391 TIKGE 395
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083).
Length = 502
Score = 27.4 bits (61), Expect = 3.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 16 VDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEE 53
+ + E+ +L M LGI+ T L+IPE G S EE
Sbjct: 467 MGHVLEIFALFMFLGILFT------LLIPETKGKSLEE 498
>gnl|CDD|118125 pfam09589, HrpA_pilin, HrpA pilus formation protein. HrpA is an
essential component of the type III secretion system
(TTSS) which pathogens use to inject virulence factors
directly into their host cells, and to cause disease.
The TTSS has an Hrp pilus appendage for channelling
effector proteins through the plant cell wall and this
pilus elongates by the addition of HrpA pilin subunits
at the distal end.
Length = 109
Score = 26.4 bits (58), Expect = 6.2
Identities = 12/66 (18%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 34 TSALELNLIIPEETGNSFEENAMIKSLTA--AKNAGMPALSDDSGLVIDVLDGKPGIHSA 91
S+ + TG+S +A + + A A + AL + D I +
Sbjct: 29 ASSANRQTNLVANTGSSDSADAQYDASSKSDANGARLIALQAEEAAKKQEEDVLAAIQAG 88
Query: 92 RWAESN 97
+ +N
Sbjct: 89 KEDSAN 94
>gnl|CDD|171835 PRK13016, PRK13016, dihydroxy-acid dehydratase; Provisional.
Length = 577
Score = 26.2 bits (58), Expect = 7.6
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 7 NNIVIASHNVDKIHEM--DSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAK 64
N+ +A+ +I EM + L P I+T +A E + + TG S NA+I + A+
Sbjct: 230 NHQRMAALCGRRIVEMVWEDL-TPSQILTKAAFENAITVAMATGCS--TNAVIHLIAMAR 286
Query: 65 NAGMPALSDD 74
AG+P DD
Sbjct: 287 RAGVPLSLDD 296
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,721,116
Number of extensions: 236658
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 365
Number of HSP's successfully gapped: 22
Length of query: 224
Length of database: 5,994,473
Length adjustment: 90
Effective length of query: 134
Effective length of database: 4,049,753
Effective search space: 542666902
Effective search space used: 542666902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)