RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide
triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
(224 letters)
>1k7k_A Hypothetical protein YGGV; MAD, His-TAG, large groove, disordered
Se-Met, structural genomics, putative ribosomal protein,
PSI; HET: MSE; 1.50A {Escherichia coli} SCOP: c.51.4.1
PDB: 2q16_A* 2pyu_A*
Length = 221
Score = 177 bits (449), Expect = 2e-45
Identities = 74/218 (33%), Positives = 108/218 (49%), Gaps = 28/218 (12%)
Query: 1 MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60
M+K +V+A+ NV K+ E+ SL+ G+ + +L + EETG +F ENA++K+
Sbjct: 23 MQK-----VVLATGNVGKVRELASLLSDFGLDIVAQTDLGVDSAEETGLTFIENAILKAR 77
Query: 61 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120
AAK +PA++DDSGL +DVL G PGI+SAR++ + +QK+ ++
Sbjct: 78 HAAKVTALPAIADDSGLAVDVLGGAPGIYSARYSGED---ATDQKNLQKLLETMKDV--- 131
Query: 121 DPAFRSAHFISVLSLAW--PDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTF 178
R A F VL D G G+I P G GFGYDPIF +T
Sbjct: 132 PDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIFFVPSEGKTA 191
Query: 179 GEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
E+T EEK+ +SHR +A K +D
Sbjct: 192 AELTREEKS---------------AISHRGQALKLLLD 214
>1vp2_A Putative xanthosine triphosphate pyrophosphatase/HAM1 protein
homolog; TM0159; 1.78A {Thermotoga maritima} SCOP:
c.51.4.1
Length = 208
Score = 115 bits (289), Expect = 7e-27
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 31/216 (14%)
Query: 1 MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60
M+KL + +A+ N K+ E+ +I P + + E I E G +F EN++ K++
Sbjct: 13 MKKL---TVYLATTNPHKVEEI-KMIAPEWMEILPSPEK--IEVVEDGETFLENSVKKAV 66
Query: 61 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120
K P ++DDSGLVI L G PG+ SAR+ E ++ + ++ +E R
Sbjct: 67 VYGKKLKHPVMADDSGLVIYSLGGFPGVMSARFMEEHSYKEKMRTILKMLEGKDR----- 121
Query: 121 DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE 180
R+A S + + + +V G I RG GFGYDP F P+GYD+TFGE
Sbjct: 122 ----RAAFVCSATFFDPVENTLISVEDRVEGRIANEIRGTGGFGYDPFFIPDGYDKTFGE 177
Query: 181 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
+ K +SHR++AF+
Sbjct: 178 IP-HLKEK---------------ISHRSKAFRKLFS 197
>1v7r_A Hypothetical protein PH1917; ntpase, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; HET: CIT; 1.40A {Pyrococcus horikoshii OT3}
SCOP: c.51.4.1 PDB: 2dvn_A* 2dvo_A* 2dvp_A 2ehk_A 2zti_A
2e5x_A*
Length = 186
Score = 109 bits (273), Expect = 5e-25
Identities = 58/208 (27%), Positives = 80/208 (38%), Gaps = 32/208 (15%)
Query: 9 IVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNAGM 68
I + N K+ E+ + + GI ++L PE E+
Sbjct: 3 IFFITSNPGKVREVANFLGTFGI---EIVQLKHEYPEIQAEKLEDVVDFGISWLKGKVPE 59
Query: 69 PALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHDPAFRSAH 128
P + +DSGL I+ L G PG++S+ + L A+ +
Sbjct: 60 PFMIEDSGLFIESLKGFPGVYSSYVY---------RTIGLEGILKLMEGAEDRRAYFKSV 110
Query: 129 FISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEMTEEEKNG 188
+ DG FSG G I RG GFGYDPIF P G ++TF EMT EEKN
Sbjct: 111 IGF-----YIDGKAYKFSGVTWGRISNEKRGTHGFGYDPIFIPEGSEKTFAEMTIEEKN- 164
Query: 189 GIDSATLFSILSTDLLSHRARAFKCFVD 216
LSHR +A K F +
Sbjct: 165 --------------ALSHRGKALKAFFE 178
>2car_A Inosine triphosphate pyrophosphatase; hydrolase, inosine
triphosphate pyrophosphohydrolase, inosine
triphosphatase deficiency, ITP, IMP; 1.09A {Homo
sapiens} SCOP: c.51.4.1 PDB: 2j4e_A* 2i5d_A
Length = 196
Score = 106 bits (264), Expect = 5e-24
Identities = 52/215 (24%), Positives = 84/215 (39%), Gaps = 30/215 (13%)
Query: 2 RKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLT 61
L+ IV + N K+ E+ ++ T A +++L E +E ++ K
Sbjct: 5 ASLVGKKIVFVTGNAKKLEEVVQILGDKFPCTLVAQKIDL---PEYQGEPDEISIQKCQE 61
Query: 62 AAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAHD 121
A + P L +D+ L + L G PG + + E E + + + +
Sbjct: 62 AVRQVQGPVLVEDTCLCFNALGGLPGPYIKWFLEKLKPEGLHQLLAGFEDKSAYALCTF- 120
Query: 122 PAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGEM 181
LS P V F G+ + PRG FG+DP FQP+GY++T+ EM
Sbjct: 121 ----------ALSTGDPSQPVRLFRGRT-SGRIVAPRGCQDFGWDPCFQPDGYEQTYAEM 169
Query: 182 TEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVD 216
+ EKN +SHR RA +
Sbjct: 170 PKAEKN---------------AVSHRFRALLELQE 189
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A
{Methanococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A*
Length = 193
Score = 103 bits (257), Expect = 4e-23
Identities = 53/222 (23%), Positives = 86/222 (38%), Gaps = 35/222 (15%)
Query: 1 MRKLIEN--NIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIK 58
M++ + I A+ N +KI E + ++ L + ++++ E + EE A
Sbjct: 1 MQRTLGEIMKIYFATGNPNKIKEANIILKDLKDVEIEQIKISY---PEIQGTLEEVAEFG 57
Query: 59 SLTAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKF 118
+ P + +DSG ++ L+G PG +S + + I L K
Sbjct: 58 AKWVYNILKKPVIVEDSGFFVEALNGFPGTYSKFVQ--------ETIGNEGILKLLEGKD 109
Query: 119 AHDPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQ-LGFGYDPIFQPNGYDRT 177
+ + + V F G V G + R + GF YD IF P +RT
Sbjct: 110 ------NRNAYFKTVIGYCDENGVRLFKGIVKGRVSEEIRSKGYGFAYDSIFIPEEEERT 163
Query: 178 FGEMTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCL 219
F EMT EEK+ +SHR +AF+ F L
Sbjct: 164 FAEMTTEEKS---------------QISHRKKAFEEFKKFLL 190
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.034
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 6/27 (22%)
Query: 100 ERDFDMAMQKIENALRSKFAHD--PAF 124
E+ A++K++ +L+ +A D PA
Sbjct: 18 EKQ---ALKKLQASLK-LYADDSAPAL 40
Score = 32.3 bits (72), Expect = 0.094
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 52 EENAMIKSLTAAKNAGMPALSDDS--GLVI 79
E+ A+ K L A+ + +DDS L I
Sbjct: 18 EKQAL-KKLQAS----LKLYADDSAPALAI 42
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 31.8 bits (72), Expect = 0.14
Identities = 26/128 (20%), Positives = 43/128 (33%), Gaps = 43/128 (33%)
Query: 50 SFEENAMIKSLT-----------AAKNAGM-PALSDDSGLVIDVLDGKPGIHSARWAESN 97
SF + K++T A N + P++ +DS ++ +G P S
Sbjct: 291 SFFVSV-RKAITVLFFIGVRCYEAYPNTSLPPSILEDS---LENNEGVPS-----PMLSI 341
Query: 98 TG-ERDFDMAMQKIENALRSKFAHDPAFRSAHFISVLSLA-WPDGHVENFSGKVSGIIVW 155
+ ++ +Q N S H P + + SL V VSG
Sbjct: 342 SNLTQE---QVQDYVNKTNS---HLP--AGKQ-VEI-SLVNGAKNLV------VSG---- 381
Query: 156 PPRGQLGF 163
PP+ G
Sbjct: 382 PPQSLYGL 389
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.00A
{Coxiella burnetii}
Length = 393
Score = 26.1 bits (57), Expect = 6.6
Identities = 11/78 (14%), Positives = 22/78 (28%), Gaps = 16/78 (20%)
Query: 103 FDMAMQKIENALRSKFAH----DPAFRSAHFISVL-----SLAWPDGHVENFSGKVSGII 153
+ + + N+L + P R A F + L + + + + I
Sbjct: 77 MNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAHAVV-NQKIFITDEEGNFIK 135
Query: 154 VWPPRGQLGFGYDPIFQP 171
W P P+
Sbjct: 136 QWNP------FSGPLIDD 147
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.135 0.400
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,967,469
Number of extensions: 89427
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 9
Length of query: 224
Length of database: 5,693,230
Length adjustment: 89
Effective length of query: 135
Effective length of database: 3,535,514
Effective search space: 477294390
Effective search space used: 477294390
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)