BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide
triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
         (224 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide triphosphate pyrophosphatase
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 224

 Score =  463 bits (1191), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/224 (100%), Positives = 224/224 (100%)

Query: 1   MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60
           MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL
Sbjct: 1   MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60

Query: 61  TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120
           TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH
Sbjct: 61  TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120

Query: 121 DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE 180
           DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE
Sbjct: 121 DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE 180

Query: 181 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRIDEK 224
           MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRIDEK
Sbjct: 181 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRIDEK 224


>gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 511

 Score = 23.9 bits (50), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 156 PPRGQLGFGYDPIFQPNGYD 175
           PPR  + FG  P +Q  G D
Sbjct: 480 PPRSDMDFGRCPSYQYEGVD 499


>gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 280

 Score = 23.5 bits (49), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 7   NNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNA 66
           +N+ +A  +VD I +  S  + L  +  SA    + I   TG S +EN +I S   A+NA
Sbjct: 63  DNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSF--ARNA 120


>gi|254780796|ref|YP_003065209.1| ribonuclease H [Candidatus Liberibacter asiaticus str. psy62]
          Length = 152

 Score = 22.7 bits (47), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 16/35 (45%)

Query: 44 PEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLV 78
           E T N  E  A IK+LTA K      L  DS  V
Sbjct: 44 KETTNNRMELMAAIKALTALKYPCKVLLYTDSSYV 78


>gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 623

 Score = 21.9 bits (45), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 95  ESNTGERDFDMAMQKIENALRSKFAHDP 122
           E   G +D+D+ ++ +EN   S+  H P
Sbjct: 235 EKFEGAQDYDLVLRFLENIDLSQIIHIP 262


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 149,537
Number of Sequences: 1233
Number of extensions: 6285
Number of successful extensions: 16
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 8
length of query: 224
length of database: 328,796
effective HSP length: 71
effective length of query: 153
effective length of database: 241,253
effective search space: 36911709
effective search space used: 36911709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 37 (18.9 bits)