BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62] (224 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780629|ref|YP_003065042.1| putative deoxyribonucleotide triphosphate pyrophosphatase [Candidatus Liberibacter asiaticus str. psy62] Length = 224 Score = 463 bits (1191), Expect = e-132, Method: Compositional matrix adjust. Identities = 224/224 (100%), Positives = 224/224 (100%) Query: 1 MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60 MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL Sbjct: 1 MRKLIENNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSL 60 Query: 61 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH Sbjct: 61 TAAKNAGMPALSDDSGLVIDVLDGKPGIHSARWAESNTGERDFDMAMQKIENALRSKFAH 120 Query: 121 DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE 180 DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE Sbjct: 121 DPAFRSAHFISVLSLAWPDGHVENFSGKVSGIIVWPPRGQLGFGYDPIFQPNGYDRTFGE 180 Query: 181 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRIDEK 224 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRIDEK Sbjct: 181 MTEEEKNGGIDSATLFSILSTDLLSHRARAFKCFVDNCLRIDEK 224 >gi|254781215|ref|YP_003065628.1| putative phage terminase, large subunit [Candidatus Liberibacter asiaticus str. psy62] Length = 511 Score = 23.9 bits (50), Expect = 2.5, Method: Compositional matrix adjust. Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 156 PPRGQLGFGYDPIFQPNGYD 175 PPR + FG P +Q G D Sbjct: 480 PPRSDMDFGRCPSYQYEGVD 499 >gi|254780279|ref|YP_003064692.1| dihydrodipicolinate reductase [Candidatus Liberibacter asiaticus str. psy62] Length = 280 Score = 23.5 bits (49), Expect = 3.0, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Query: 7 NNIVIASHNVDKIHEMDSLIMPLGIMTTSALELNLIIPEETGNSFEENAMIKSLTAAKNA 66 +N+ +A +VD I + S + L + SA + I TG S +EN +I S A+NA Sbjct: 63 DNLAMAIQSVDGIIDFSSPALTLQSLNISAQHNIVHIIGTTGFSVKENEVISSF--ARNA 120 >gi|254780796|ref|YP_003065209.1| ribonuclease H [Candidatus Liberibacter asiaticus str. psy62] Length = 152 Score = 22.7 bits (47), Expect = 5.3, Method: Compositional matrix adjust. Identities = 15/35 (42%), Positives = 16/35 (45%) Query: 44 PEETGNSFEENAMIKSLTAAKNAGMPALSDDSGLV 78 E T N E A IK+LTA K L DS V Sbjct: 44 KETTNNRMELMAAIKALTALKYPCKVLLYTDSSYV 78 >gi|254780918|ref|YP_003065331.1| glycosyl transferase family protein [Candidatus Liberibacter asiaticus str. psy62] Length = 623 Score = 21.9 bits (45), Expect = 9.8, Method: Compositional matrix adjust. Identities = 9/28 (32%), Positives = 16/28 (57%) Query: 95 ESNTGERDFDMAMQKIENALRSKFAHDP 122 E G +D+D+ ++ +EN S+ H P Sbjct: 235 EKFEGAQDYDLVLRFLENIDLSQIIHIP 262 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.318 0.135 0.400 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 149,537 Number of Sequences: 1233 Number of extensions: 6285 Number of successful extensions: 16 Number of sequences better than 100.0: 8 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 8 Number of HSP's gapped (non-prelim): 8 length of query: 224 length of database: 328,796 effective HSP length: 71 effective length of query: 153 effective length of database: 241,253 effective search space: 36911709 effective search space used: 36911709 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 37 (18.9 bits)