HHsearch alignment for GI: 254780630 and conserved domain: COG1185
>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis].
Probab=99.90 E-value=2e-22 Score=144.94 Aligned_cols=208 Identities=19% Similarity=0.253 Sum_probs=177.5
Q ss_pred EEEEEEEC-CCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCHHH
Q ss_conf 87999976-632688289999689489999993332453101554342110010055565322-2333444477731023
Q gi|254780630|r 12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR-VKREAVSGRQGGRSQE 89 (242)
Q Consensus 12 R~i~i~~g-~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~ 89 (242)
T Consensus 14 ~~l~~etg~~A~qa~gav~~~~gdt~vl~t~~~~~-~~---~~~dF~PLtV~y~Ek~yaaGkiPGgf~kREGrpse~e~L 89 (692)
T COG1185 14 RTLTLETGKIARQANGAVLVRYGDTVVLATVVASK-PK---EGQDFFPLTVNYEEKTYAAGKIPGGFFKREGRPSEKEIL 89 (692)
T ss_pred EEEEEECCHHHHHCCCCEEEEECCEEEEEEEEECC-CC---CCCCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 46999824335525750899978979999975147-88---898844316735450120676777420367788752026
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCCC
Q ss_conf 44443224210002200488022234420355576310100012221011001000001463101124378310200454
Q gi|254780630|r 90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML 169 (242)
Q Consensus 90 ~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (242)
T Consensus 90 ~sRLIDRpiRPlFp~g~~~evqIv~tvls~D~~~~pdi~a~~gaSaAl~ls~-------------iPf~gpi~~vrvg~i 156 (692)
T COG1185 90 TSRLIDRPIRPLFPKGFRNEVQIVNTVLSVDPENDPDILAMVGASAALSLSG-------------IPFLGPIGAVRVGYI 156 (692)
T ss_pred HHHHCCCCCCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------CCCCCCCCEEEEEEE
T ss_conf 7764066553355212065408999998667877868899878889875137-------------986676014899998
Q ss_pred CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5541003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r 170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS 239 (242)
Q Consensus 170 ~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~ 239 (242)
T Consensus 157 dg~~vlNPt~~e~~~s~lDlvVAGT~~-aV~MVE~~a--~~l~E~~ml~Av~fg~~~~~~~~~~qe~l~~ 223 (692)
T COG1185 157 DGIFVLNPTLEELEESKLDLVVAGTKD-AVNMVESEA--DELDEEVMLEAVEFGHEAIQSVINAQEELAL 223 (692)
T ss_pred CCEEEECCCHHHHHHCCEEEEECCCHH-HHHEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 898997787666541631257607866-641043466--6688899999999888989999999999999