HHsearch alignment for GI: 254780630 and conserved domain: COG1185

>COG1185 Pnp Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) [Translation, ribosomal structure and biogenesis].
Probab=99.90  E-value=2e-22  Score=144.94  Aligned_cols=208  Identities=19%  Similarity=0.253  Sum_probs=177.5

Q ss_pred             EEEEEEEC-CCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCCHHH
Q ss_conf             87999976-632688289999689489999993332453101554342110010055565322-2333444477731023
Q gi|254780630|r   12 REISLTRR-VSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR-VKREAVSGRQGGRSQE   89 (242)
Q Consensus        12 R~i~i~~g-~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~~~~   89 (242)
T Consensus        14 ~~l~~etg~~A~qa~gav~~~~gdt~vl~t~~~~~-~~---~~~dF~PLtV~y~Ek~yaaGkiPGgf~kREGrpse~e~L   89 (692)
T COG1185          14 RTLTLETGKIARQANGAVLVRYGDTVVLATVVASK-PK---EGQDFFPLTVNYEEKTYAAGKIPGGFFKREGRPSEKEIL   89 (692)
T ss_pred             EEEEEECCHHHHHCCCCEEEEECCEEEEEEEEECC-CC---CCCCCCCEEEEEEEEHHCCCCCCCCCCCCCCCCCCCHHH
T ss_conf             46999824335525750899978979999975147-88---898844316735450120676777420367788752026


Q ss_pred             HHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECCCC
Q ss_conf             44443224210002200488022234420355576310100012221011001000001463101124378310200454
Q gi|254780630|r   90 IQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCGML  169 (242)
Q Consensus        90 ~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (242)
T Consensus        90 ~sRLIDRpiRPlFp~g~~~evqIv~tvls~D~~~~pdi~a~~gaSaAl~ls~-------------iPf~gpi~~vrvg~i  156 (692)
T COG1185          90 TSRLIDRPIRPLFPKGFRNEVQIVNTVLSVDPENDPDILAMVGASAALSLSG-------------IPFLGPIGAVRVGYI  156 (692)
T ss_pred             HHHHCCCCCCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCC-------------CCCCCCCCEEEEEEE
T ss_conf             7764066553355212065408999998667877868899878889875137-------------986676014899998


Q ss_pred             CCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             5541003343101234303688875998689999218636868999999999999999999999999977
Q gi|254780630|r  170 CGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVIS  239 (242)
Q Consensus       170 ~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~  239 (242)
T Consensus       157 dg~~vlNPt~~e~~~s~lDlvVAGT~~-aV~MVE~~a--~~l~E~~ml~Av~fg~~~~~~~~~~qe~l~~  223 (692)
T COG1185         157 DGIFVLNPTLEELEESKLDLVVAGTKD-AVNMVESEA--DELDEEVMLEAVEFGHEAIQSVINAQEELAL  223 (692)
T ss_pred             CCEEEECCCHHHHHHCCEEEEECCCHH-HHHEEECCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             898997787666541631257607866-641043466--6688899999999888989999999999999