HHsearch alignment for GI: 254780630 and conserved domain: COG2123
>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=1.1e-44 Score=269.87 Aligned_cols=233 Identities=18% Similarity=0.239 Sum_probs=204.0
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
T Consensus 23 ~R~DGR~~~efR~leI~~~vi~ka~GSa~VklG~Tqvv~gvK~eig-~Pf~DtP~eG~~~~n~El~Plas~~fE~Gppd- 100 (272)
T COG2123 23 IRIDGRSFDEFRPLEIETGVIPKANGSALVKLGNTQVVVGVKAEIG-EPFPDTPNEGVLVVNVELSPLASPSFEPGPPD- 100 (272)
T ss_pred CCCCCCCCCCCCCEEEEECCEECCCCCEEEEECCEEEEEEEECCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC-
T ss_conf 2568988212313388957142478857998268089999972457-88889987755775546602324554689996-
Q ss_pred CCCCCCHHHHHHHHHHHHHHH------CCCCCC--CCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCC-CCCCC-
Q ss_conf 477731023444432242100------022004--88022234420355576310100012221011001000-00146-
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSV------VDLSAL--GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME-DCSNK- 150 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~------~~~~~~--~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~-~~~~~- 150 (242)
T Consensus 101 ----e~aielsrvvdr~lr~s~aiDlekL~I~~g~kvwvv~vDv~vld~DGnl~Daa~lA~~AAL~~t~vP~~~~~~~~~ 176 (272)
T COG2123 101 ----ELAIELSRVVDRGLRESKAIDLEKLCIEEGKKVWVVFVDVHVLDYDGNLIDAASLAAVAALLNTRVPKAVEVGDGE 176 (272)
T ss_pred ----HHHHHHHHHHHHHHHHCCCCCHHHEEEECCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf ----0178999999998876167565451575398899999989998689978989999999999746797045327850
Q ss_pred -------CCEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf -------3101124378310200454554100334310123430368887599868999921863686899999999999
Q gi|254780630|r 151 -------FQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA 223 (242)
Q Consensus 151 -------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a 223 (242)
T Consensus 177 ~v~~~~~~~~pl~~~~~pi~vt~a~ig~~lvvDPtleEe~v~d~~ltit~~~~~~Iv~iqK~g-~~~~~~~~~~~~~~~A 255 (272)
T COG2123 177 IVIEVEEEPVPLPVSNPPISVTFAKIGNVLVVDPSLEEELVADGRLTITVNEDGEIVAIQKVG-GGSITESDLEKALKTA 255 (272)
T ss_pred EEECCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCHHHHCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHHH
T ss_conf 563156777445567875699999988889858980356523713999997998599999718-8767899999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999772
Q gi|254780630|r 224 KDRIADLIKLQKDVISN 240 (242)
Q Consensus 224 ~~~~~~i~~~i~~~L~~ 240 (242)
T Consensus 256 ~~~~~kl~~~~~~~L~~ 272 (272)
T COG2123 256 LSKAEKLREALKEALKE 272 (272)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999986339