HHsearch alignment for GI: 254780630 and conserved domain: COG2123

>COG2123 RNase PH-related exoribonuclease [Translation, ribosomal structure and biogenesis].
Probab=100.00  E-value=1.1e-44  Score=269.87  Aligned_cols=233  Identities=18%  Similarity=0.239  Sum_probs=204.0

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS   80 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (242)
T Consensus        23 ~R~DGR~~~efR~leI~~~vi~ka~GSa~VklG~Tqvv~gvK~eig-~Pf~DtP~eG~~~~n~El~Plas~~fE~Gppd-  100 (272)
T COG2123          23 IRIDGRSFDEFRPLEIETGVIPKANGSALVKLGNTQVVVGVKAEIG-EPFPDTPNEGVLVVNVELSPLASPSFEPGPPD-  100 (272)
T ss_pred             CCCCCCCCCCCCCEEEEECCEECCCCCEEEEECCEEEEEEEECCCC-CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCC-
T ss_conf             2568988212313388957142478857998268089999972457-88889987755775546602324554689996-


Q ss_pred             CCCCCCHHHHHHHHHHHHHHH------CCCCCC--CCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCC-CCCCC-
Q ss_conf             477731023444432242100------022004--88022234420355576310100012221011001000-00146-
Q gi|254780630|r   81 GRQGGRSQEIQRMIGRALRSV------VDLSAL--GSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHME-DCSNK-  150 (242)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l~~~------~~~~~~--~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~-~~~~~-  150 (242)
T Consensus       101 ----e~aielsrvvdr~lr~s~aiDlekL~I~~g~kvwvv~vDv~vld~DGnl~Daa~lA~~AAL~~t~vP~~~~~~~~~  176 (272)
T COG2123         101 ----ELAIELSRVVDRGLRESKAIDLEKLCIEEGKKVWVVFVDVHVLDYDGNLIDAASLAAVAALLNTRVPKAVEVGDGE  176 (272)
T ss_pred             ----HHHHHHHHHHHHHHHHCCCCCHHHEEEECCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             ----0178999999998876167565451575398899999989998689978989999999999746797045327850


Q ss_pred             -------CCEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             -------3101124378310200454554100334310123430368887599868999921863686899999999999
Q gi|254780630|r  151 -------FQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLA  223 (242)
Q Consensus       151 -------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a  223 (242)
T Consensus       177 ~v~~~~~~~~pl~~~~~pi~vt~a~ig~~lvvDPtleEe~v~d~~ltit~~~~~~Iv~iqK~g-~~~~~~~~~~~~~~~A  255 (272)
T COG2123         177 IVIEVEEEPVPLPVSNPPISVTFAKIGNVLVVDPSLEEELVADGRLTITVNEDGEIVAIQKVG-GGSITESDLEKALKTA  255 (272)
T ss_pred             EEECCCCCCCCCCCCCCCEEEEEEEECCEEEECCCCCHHHHCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHHH
T ss_conf             563156777445567875699999988889858980356523713999997998599999718-8767899999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999772
Q gi|254780630|r  224 KDRIADLIKLQKDVISN  240 (242)
Q Consensus       224 ~~~~~~i~~~i~~~L~~  240 (242)
T Consensus       256 ~~~~~kl~~~~~~~L~~  272 (272)
T COG2123         256 LSKAEKLREALKEALKE  272 (272)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999986339