HHsearch alignment for GI: 254780630 and conserved domain: PRK11824
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional.
Probab=100.00 E-value=1.5e-33 Score=207.48 Aligned_cols=226 Identities=21% Similarity=0.240 Sum_probs=187.5
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC--CCCCCC--CCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 967899801178799997663268828999968948999999333--245310--1554342110010055565322233
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--KVPMWI--RNTKHGWITAEYGMLPRSTGNRVKR 76 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~ 76 (242)
T Consensus 314 ~RiDGR~~dEIRPI~~EvgvLPr~HGSaLFTRGETQaL~~~TLG~~~d~Q~iD~l~~~~~krFmlHYNFPPfSvGE~g~~ 393 (694)
T PRK11824 314 IRIDGRDLDEIRPISIEVGVLPRTHGSALFTRGETQALVVATLGTLRDAQIIDGLEGEYKKRFMLHYNFPPYSVGETGRV 393 (694)
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 66688886641452578388788874345871560699999725830101001567651104799747899767876677
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECC
Q ss_conf 34444777310234444322421000220048802223442035557631010001222101100100000146310112
Q gi|254780630|r 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 (242)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~ 156 (242)
T Consensus 394 ~~p~R----REIGHG~LAeRAL~~vlP~~e~FPYtIRvvSEileSNGSSSMAsVCg~sLALmdAGVPik~~VAGIAmGLi 469 (694)
T PRK11824 394 GSPGR----REIGHGALAERALEPVLPSEEEFPYTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGLI 469 (694)
T ss_pred CCCCC----CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf 89763----10033699999887118985669834899988004488534488987879988579964664004777778
Q ss_pred CCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43783102004545541003343101234303688875998689999218636868999999999999999999999999
Q gi|254780630|r 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 (242)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~ 236 (242)
T Consensus 470 ~e~---------~~~~iLtDI~G~EDh~GDMDFKvAGT~~G-ITA~QmDiKi~Gi~~~il~~Al~qA~~gR~~IL~~M~~ 539 (694)
T PRK11824 470 KEG---------DKYAVLSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIDGITREIMEEALEQAKEGRLHILGKMNE 539 (694)
T ss_pred ECC---------CEEEEEEECCCCCCCCCCCCEEEECCCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 708---------73799974044410247753156236664-48887403447969899999999999999999999987
Q ss_pred HHHH
Q ss_conf 9772
Q gi|254780630|r 237 VISN 240 (242)
Q Consensus 237 ~L~~ 240 (242)
T Consensus 540 ~i~~ 543 (694)
T PRK11824 540 AISE 543 (694)
T ss_pred HCCC
T ss_conf 3666