HHsearch alignment for GI: 254780630 and conserved domain: PRK11824

>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional.
Probab=100.00  E-value=1.5e-33  Score=207.48  Aligned_cols=226  Identities=21%  Similarity=0.240  Sum_probs=187.5

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECC--CCCCCC--CCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf             967899801178799997663268828999968948999999333--245310--1554342110010055565322233
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEE--KVPMWI--RNTKHGWITAEYGMLPRSTGNRVKR   76 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~~   76 (242)
T Consensus       314 ~RiDGR~~dEIRPI~~EvgvLPr~HGSaLFTRGETQaL~~~TLG~~~d~Q~iD~l~~~~~krFmlHYNFPPfSvGE~g~~  393 (694)
T PRK11824        314 IRIDGRDLDEIRPISIEVGVLPRTHGSALFTRGETQALVVATLGTLRDAQIIDGLEGEYKKRFMLHYNFPPYSVGETGRV  393 (694)
T ss_pred             CCCCCCCCCCCCCCEEECCCCCCCCCCEEEECCCCEEEEEEEECCCCHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf             66688886641452578388788874345871560699999725830101001567651104799747899767876677


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECC
Q ss_conf             34444777310234444322421000220048802223442035557631010001222101100100000146310112
Q gi|254780630|r   77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV  156 (242)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~  156 (242)
T Consensus       394 ~~p~R----REIGHG~LAeRAL~~vlP~~e~FPYtIRvvSEileSNGSSSMAsVCg~sLALmdAGVPik~~VAGIAmGLi  469 (694)
T PRK11824        394 GSPGR----REIGHGALAERALEPVLPSEEEFPYTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGLI  469 (694)
T ss_pred             CCCCC----CCCCCHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEE
T ss_conf             89763----10033699999887118985669834899988004488534488987879988579964664004777778


Q ss_pred             CCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             43783102004545541003343101234303688875998689999218636868999999999999999999999999
Q gi|254780630|r  157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD  236 (242)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~  236 (242)
T Consensus       470 ~e~---------~~~~iLtDI~G~EDh~GDMDFKvAGT~~G-ITA~QmDiKi~Gi~~~il~~Al~qA~~gR~~IL~~M~~  539 (694)
T PRK11824        470 KEG---------DKYAVLSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIDGITREIMEEALEQAKEGRLHILGKMNE  539 (694)
T ss_pred             ECC---------CEEEEEEECCCCCCCCCCCCEEEECCCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             708---------73799974044410247753156236664-48887403447969899999999999999999999987


Q ss_pred             HHHH
Q ss_conf             9772
Q gi|254780630|r  237 VISN  240 (242)
Q Consensus       237 ~L~~  240 (242)
T Consensus       540 ~i~~  543 (694)
T PRK11824        540 AISE  543 (694)
T ss_pred             HCCC
T ss_conf             3666