HHsearch alignment for GI: 254780630 and conserved domain: TIGR02696
>TIGR02696 pppGpp_PNP guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase; InterPro: IPR014069 The of the characterization of two proteins from Streptomyces coelicolor ahs been presented . The protein in this family was shown to have poly(A) polymerase activity and may be responsible for polyadenylating RNA in this species. It has also been shown that a nearly identical plasmid-encoded protein from Streptomyces antibioticus is a bifunctional enzyme that acts also as a guanosine pentaphosphate synthetase ..
Probab=98.91 E-value=3.1e-08 Score=65.28 Aligned_cols=212 Identities=18% Similarity=0.154 Sum_probs=158.1
Q ss_pred CEEEEEEEEC-CCCCCCCEEEEEEC-CCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 1787999976-63268828999968-9489999993332453101554342110010055565322-2333444477731
Q gi|254780630|r 10 QMREISLTRR-VSKYAEGSCLVKFG-DTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNR-VKREAVSGRQGGR 86 (242)
Q Consensus 10 e~R~i~i~~g-~~~~a~GSa~v~~G-~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~~~~~~~~~~~~~ 86 (242)
T Consensus 15 G~~~~rfe~G~la~qa~G~~~~yld~~tm~l~~t~~~~~P---~~~~dffPltvdveer~yaaG~iPGsffrreGrPs~~ 91 (725)
T TIGR02696 15 GTRTIRFETGRLARQAQGSVVAYLDDETMLLSATTASKQP---KDQLDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTE 91 (725)
T ss_pred CCEEEEEECCHHHHHCCCCEEEEECCCEEEEEECHHCCCC---HHHCCCCCEEEEHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 6516664001132322773788872761466420001374---0224512205531000010267875110147897412
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEEC
Q ss_conf 02344443224210002200488022234420355576310100012221011001000001463101124378310200
Q gi|254780630|r 87 SQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISC 166 (242)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~ 166 (242)
T Consensus 92 ail~CrlidrPlrP~f~~Glrne~q~v~tvl~~~P~~~y~~~ainaas~~t~-------------~~GlP~sGP~~Gvr~ 158 (725)
T TIGR02696 92 AILACRLIDRPLRPSFVKGLRNEVQVVVTVLSLNPDELYDVVAINAASASTQ-------------LAGLPFSGPIGGVRL 158 (725)
T ss_pred HEEEEEECCCCCCHHHHHHHHHHEEEEEEEEECCHHHHHHHHHHHHHHHHHH-------------HCCCCCCCCCCCEEE
T ss_conf 3123100046787125520012000012312017256766666543434433-------------126754466442488
Q ss_pred CCCC-CCCEECCCCCCCCCCCEEEEEEE---CC----CCC--EEEEEECCCCCCC----------CHHHHHHHHHHHHHH
Q ss_conf 4545-54100334310123430368887---59----986--8999921863686----------899999999999999
Q gi|254780630|r 167 GMLC-GYPIVDLDYGEDSTIDVDANFVM---TD----SGH--IVEVQGSAERATF----------SQDHFFAMLNLAKDR 226 (242)
Q Consensus 167 ~~~~-~~~~~d~~~~ee~~~~~~l~v~~---~~----~~~--i~~i~~~g~~~~~----------~~~~l~~~l~~a~~~ 226 (242)
T Consensus 159 ali~~~qWvafP~~~~~~~a~f~~~v~Grv~~~~~~~~~dvaimmvea~~t~~~~~~~~~G~~~P~e~~v~~Gl~aak~f 238 (725)
T TIGR02696 159 ALIEDGQWVAFPTVEQLEEAVFDLVVAGRVLENEDGTEGDVAIMMVEAEATEKTLELVEGGAKAPTEEVVAEGLEAAKPF 238 (725)
T ss_pred EEEECCCEEECCCHHHHHCCEEEEEEEEEEEECCCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 89717825863762322013033356511231245665645899962334178999986110373278998767767899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780630|r 227 IADLIKLQKDV 237 (242)
Q Consensus 227 ~~~i~~~i~~~ 237 (242)
T Consensus 239 i~~l~~~q~~l 249 (725)
T TIGR02696 239 IKVLCRAQADL 249 (725)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999