HHsearch alignment for GI: 254780630 and conserved domain: TIGR03591
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=100.00 E-value=1.1e-33 Score=208.33 Aligned_cols=227 Identities=21% Similarity=0.233 Sum_probs=187.6
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCC--CCCC--CCCCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 9678998011787999976632688289999689489999993332--4531--01554342110010055565322233
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEK--VPMW--IRNTKHGWITAEYGMLPRSTGNRVKR 76 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~ 76 (242)
T Consensus 310 ~R~DGR~~dEIRpIs~EvgvLPr~HGSaLFtRGETQaL~v~TLG~~~d~Q~iD~l~~~~~krFmlHYNFPPfSvGE~g~~ 389 (684)
T TIGR03591 310 KRIDGRDLDTIRPISIEVGVLPRTHGSALFTRGETQALVVTTLGTERDEQIIDDLEGEYRKRFMLHYNFPPYSVGEVGRV 389 (684)
T ss_pred CCCCCCCCCCCCCHHCCCCCCCCCCCCEEEEECCCEEEEEEEECCCHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 77889982301240203387577774357885265079999506822211011457651104899747999767876778
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECC
Q ss_conf 34444777310234444322421000220048802223442035557631010001222101100100000146310112
Q gi|254780630|r 77 EAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQV 156 (242)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~ 156 (242)
T Consensus 390 ~~p~----RREIGHG~LAeRAL~~vlP~~e~FPYtIRvvSeileSNGSSSMAsVCg~sLALmdAGVPik~~VAGIAmGLi 465 (684)
T TIGR03591 390 GGPG----RREIGHGALAERALKAVLPSEEEFPYTIRVVSEILESNGSSSMASVCGGSLALMDAGVPIKAPVAGIAMGLI 465 (684)
T ss_pred CCCC----CHHHCCHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
T ss_conf 8998----501226799999998518982338814899988004688434289999999998679963665025777768
Q ss_pred CCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43783102004545541003343101234303688875998689999218636868999999999999999999999999
Q gi|254780630|r 157 LKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKD 236 (242)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~ 236 (242)
T Consensus 466 ~e~--------d~~y~iLtDI~G~EDh~GDMDFKvaGT~~G-ITa~QmDiKi~Gi~~~il~~Al~qA~~~R~~IL~~M~~ 536 (684)
T TIGR03591 466 KEG--------DERFAVLSDILGDEDHLGDMDFKVAGTRDG-ITALQMDIKIDGITREIMEQALEQAKEGRLHILGEMNK 536 (684)
T ss_pred ECC--------CCCEEEEEECCCCCCCCCCCCEEEECCCCC-EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 737--------874799973133410147753056336664-48887403558978999999999999999999999997
Q ss_pred HHHH
Q ss_conf 9772
Q gi|254780630|r 237 VISN 240 (242)
Q Consensus 237 ~L~~ 240 (242)
T Consensus 537 ~i~~ 540 (684)
T TIGR03591 537 VISE 540 (684)
T ss_pred HCCC
T ss_conf 3525