HHsearch results for GI: 254780630 and protein with PDBid: 2je6_A
>2je6_A RRP42, exosome complex exonuclease 2; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: d.14.1.4 d.101.1.1 PDB: 2jea_A* 2jeb_A* 2br2_A 2c37_A* 2c38_A* 2c39_A* 3l7z_A
Probab=100.00 E-value=2.8e-45 Score=272.33 Aligned_cols=232 Identities=24% Similarity=0.294 Sum_probs=200.9
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|++|...+ ....+..+.+.+.+.+.|+....+...
T Consensus 29 iR~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vl~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 103 (277)
T 2je6_A 29 IRQDGRKLTDYRPLSITLDYAKKADGSALVKLGTTMVLAGTKLEIDKP-YEDTPNQGNLIVNVELLPLAYETFEPG---- 103 (277)
T ss_dssp BCTTSCBTTCCCCEEEEETCSTTSSEEEEEEETTEEEEEEEEEEEECC-CTTCTTCCEEEEEEEECTTSCTTCCCS----
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCC-HHHCCCCCEEEEEEEECCCCCCCCCCC----
T ss_conf 879896998843749997988999879999979938988998676684-430787543776664044221115678----
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCC--------CCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCC---
Q ss_conf 477731023444432242100022--------004880222344203555763101000122210110010000014---
Q gi|254780630|r 81 GRQGGRSQEIQRMIGRALRSVVDL--------SALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN--- 149 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~--- 149 (242)
....+...++..+++.+.+.... ..++.|++.++++++++||++++++++|+++||.|+++|+.....
T Consensus 104 -~~~~~~~~~~~~l~~~l~~~~~l~~~~l~i~~~~~~~~i~i~v~vl~~dG~~~~aai~a~~~AL~da~ip~~~~~~~~~ 182 (277)
T 2je6_A 104 -PPDENAIELARVVDRSLRDSKALDLTKLVIEPGKSVWTVWLDVYVLDYGGNVLDACTLASVAALYNTKVYKVEQHSNGI 182 (277)
T ss_dssp -SCCHHHHHHHHHHHHHHHHTTCSCGGGGEEETTTEEEEEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEECC---C
T ss_pred -CCCCHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCE
T ss_conf -8741567776899875332002102113667775169999999996489987779999999999975865200234430
Q ss_pred -----CCCEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf -----631011243783102004545541003343101234303688875998689999218636868999999999999
Q gi|254780630|r 150 -----KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 (242)
Q Consensus 150 -----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~ 224 (242)
......|+..++.++++...++.++.||+.+|+..+++.++++++.+++++.+++.| +++++++++.+|+++|.
T Consensus 183 ~~~~~~~~~~~pl~~~~~~vs~~~~~~~~~~D~~~~E~~~~~~~l~v~~~~~~~i~~l~~~g-~~~l~~~~l~~~i~~a~ 261 (277)
T 2je6_A 183 SVNKNEVVGKLPLNYPVVTISVAKVDKYLVVDPDLDEESIMDAKISFSYTPDLKIVGIQKSG-KGSMSLQDIDQAENTAR 261 (277)
T ss_dssp EEEEEEEEEECCCSCCCEEEEEEEETTEEEESCCHHHHHHCSEEEEEEECTTCCEEEEEEES-SSCEEHHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCCCCEEEEEEEEECCEEEECCCHHHHHHCCCEEEEEEECCCCEEEEEECC-CCCCCHHHHHHHHHHHH
T ss_conf 12113422468855751589997665758874743445433866999997999899999168-88979999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999977
Q gi|254780630|r 225 DRIADLIKLQKDVIS 239 (242)
Q Consensus 225 ~~~~~i~~~i~~~L~ 239 (242)
+++++|+++|+++|.
T Consensus 262 ~~~~~l~~~l~~~L~ 276 (277)
T 2je6_A 262 STAVKLLEELKKHLG 276 (277)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999857