HHsearch results for GI: 254780630 and protein with PDBid: 2nn6_B

>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00  E-value=0  Score=287.15  Aligned_cols=222  Identities=25%  Similarity=0.314  Sum_probs=198.3

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCC--CCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf             96789980117879999766326882899996894899999933324531--0155434211001005556532223334
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW--IRNTKHGWITAEYGMLPRSTGNRVKREA   78 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~   78 (242)
                      +|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|++|.+.+..  ...++.+.+.+++.+.|++...+..+..
T Consensus        16 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vla~V~~p~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~   95 (249)
T 2nn6_B           16 YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPH   95 (249)
T ss_dssp             BCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSSCCCTTT
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
T ss_conf             12899799984274999797999888999999993999999937544653001379759999998318988886655546


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCC
Q ss_conf             44477731023444432242100022004880222344203555763101000122210110010000014631011243
Q gi|254780630|r   79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK  158 (242)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~  158 (242)
                          ...+..+++..+.+++++.++...+++|.+.++++++++||++++++++|+++||.++++|+.             
T Consensus        96 ----~~~~~~~~~~~i~~~l~~~i~~~~~~~~~I~i~v~vl~~DG~ll~aa~~aa~~AL~~agip~~-------------  158 (249)
T 2nn6_B           96 ----GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMR-------------  158 (249)
T ss_dssp             ----STHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCS-------------
T ss_pred             ----CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC-------------
T ss_conf             ----763112201899865423366233787399999999737898307888888999985699864-------------


Q ss_pred             CCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEE-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             78310200454554100334310123430368887-59986899992186368689999999999999999999999999
Q gi|254780630|r  159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV  237 (242)
Q Consensus       159 ~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~  237 (242)
                      ++++++++++.++.++.||+.+||..+++.+++++ +++++||++|+.|   .++++++.+|++.|++++++++++++++
T Consensus       159 ~~v~avs~~~~~~~~ivDpt~~Ee~~~~~~l~va~~~~~~~i~~i~~~g---~~~~~~~~~~~~~A~~~~~~i~~~i~~~  235 (249)
T 2nn6_B          159 DFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDA---RLHEDHLERVLEAAAQAARDVHTLLDRV  235 (249)
T ss_dssp             SCCEEEEEEEETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECS---CCBTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCEEECCCCHHHHHCCCCEEEEEECCCCCCEEEEEEEE---EECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4145899998757476169978872278679999838999769999483---5999999999999999999999999999


Q ss_pred             HHHCC
Q ss_conf             77209
Q gi|254780630|r  238 ISNEV  242 (242)
Q Consensus       238 L~~~~  242 (242)
                      |++++
T Consensus       236 l~~~~  240 (249)
T 2nn6_B          236 VRQHV  240 (249)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99998