HHsearch results for GI: 254780630 and protein with PDBid: 2nn6_B
>2nn6_B Exosome complex exonuclease RRP41; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=0 Score=287.15 Aligned_cols=222 Identities=25% Similarity=0.314 Sum_probs=198.3
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCC--CCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531--0155434211001005556532223334
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMW--IRNTKHGWITAEYGMLPRSTGNRVKREA 78 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (242)
+|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|++|.+.+.. ...++.+.+.+++.+.|++...+..+..
T Consensus 16 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vla~V~~p~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~ 95 (249)
T 2nn6_B 16 YRVDGRRAGELRKIQARMGVFAQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPH 95 (249)
T ss_dssp BCSSSSCTTSCCCEEEEESCSSSSSEEEEEEESSCEEEEEEEEEEECCSSSCCCCCSSCCEEEEEEECTTTSSSCCCTTT
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 12899799984274999797999888999999993999999937544653001379759999998318988886655546
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCC
Q ss_conf 44477731023444432242100022004880222344203555763101000122210110010000014631011243
Q gi|254780630|r 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158 (242)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~ 158 (242)
...+..+++..+.+++++.++...+++|.+.++++++++||++++++++|+++||.++++|+.
T Consensus 96 ----~~~~~~~~~~~i~~~l~~~i~~~~~~~~~I~i~v~vl~~DG~ll~aa~~aa~~AL~~agip~~------------- 158 (249)
T 2nn6_B 96 ----GDRKSCEMGLQLRQTFEAAILTQLHPRSQIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMR------------- 158 (249)
T ss_dssp ----STHHHHHHHHHHHHHHHHTTCGGGCTTEEEEEEEEEEECCSCHHHHHHHHHHHHHHHTCCCCS-------------
T ss_pred ----CCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCC-------------
T ss_conf ----763112201899865423366233787399999999737898307888888999985699864-------------
Q ss_pred CCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEE-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78310200454554100334310123430368887-59986899992186368689999999999999999999999999
Q gi|254780630|r 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDV 237 (242)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~ 237 (242)
++++++++++.++.++.||+.+||..+++.+++++ +++++||++|+.| .++++++.+|++.|++++++++++++++
T Consensus 159 ~~v~avs~~~~~~~~ivDpt~~Ee~~~~~~l~va~~~~~~~i~~i~~~g---~~~~~~~~~~~~~A~~~~~~i~~~i~~~ 235 (249)
T 2nn6_B 159 DFVCACSAGFVDGTALADLSHVEEAAGGPQLALALLPASGQIALLEMDA---RLHEDHLERVLEAAAQAARDVHTLLDRV 235 (249)
T ss_dssp SCCEEEEEEEETTEEEESCCHHHHTSSCCCEEEEEETTTTEEEEEEECS---CCBTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEECCEEECCCCHHHHHCCCCEEEEEECCCCCCEEEEEEEE---EECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4145899998757476169978872278679999838999769999483---5999999999999999999999999999
Q ss_pred HHHCC
Q ss_conf 77209
Q gi|254780630|r 238 ISNEV 242 (242)
Q Consensus 238 L~~~~ 242 (242)
|++++
T Consensus 236 l~~~~ 240 (249)
T 2nn6_B 236 VRQHV 240 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99998