HHsearch results for GI: 254780630 and protein with PDBid: 2nn6_E

>2nn6_E Exosome complex exonuclease RRP42; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00  E-value=0  Score=280.93  Aligned_cols=234  Identities=15%  Similarity=0.162  Sum_probs=200.7

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS   80 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (242)
                      +|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|++|+..+ ..+.++.+.+.+.+.+.|++...+..+..  
T Consensus        36 iR~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~Vla~V~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~~~~~~~--  112 (305)
T 2nn6_E           36 LRVDGRGCEDYRCVEVETDVVSNTSGSARVKLGHTDILVGVKAEMGTP-KLEKPNEGYLEFFVDCSASATPEFEGRGG--  112 (305)
T ss_dssp             CCSSSCCSSCCCCCEEEECCCTTSSSEEEEEETTEEEEEECCCCCSCC-CSSSCSSCCEEEECCCCTTTCSSCCTTST--
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEEECCCCCC-HHHCCCCCCEEEEEEECCCCCCCCCCCCC--
T ss_conf             889997988852759996977898727999989948999998875686-67688656033455416644456578898--


Q ss_pred             CCCCCCHHHHHHHHHHHH--------HHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCC---
Q ss_conf             477731023444432242--------100022004880222344203555763101000122210110010000014---
Q gi|254780630|r   81 GRQGGRSQEIQRMIGRAL--------RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSN---  149 (242)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~---  149 (242)
                         .......+..+.+.+        .+.++...++.|++.++++++++||++++++++|+++||.++++|+.....   
T Consensus       113 ---~~~~~~~~~~l~~~l~~~~~~~~~~l~i~~~~~~~~i~i~v~Vl~~DG~~l~a~i~A~~~AL~d~~iP~~~~~~~~~  189 (305)
T 2nn6_E          113 ---DDLGTEIANTLYRIFNNKSSVDLKTLCISPREHCWVLYVDVLLLECGGNLFDAISIAVKAALFNTRIPRVRVLEDEE  189 (305)
T ss_dssp             ---HHHHHHHHHHHHHHHHHSCCSCSSSSCSSTTTCCCCEEEEEEECCCCSSHHHHHHHHHHHTTTTCCCCEEEEECC--
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf             ---84113442799999864225556664056778528999999997289987889999999999864998401014654


Q ss_pred             -----------CCCEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHH
Q ss_conf             -----------631011243783102004545541003343101234303688875998689999218636868999999
Q gi|254780630|r  150 -----------KFQLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFA  218 (242)
Q Consensus       150 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~  218 (242)
                                 ....++++.+.++++++...++.++.||+.+||..+.+.++++++++++++.+++.| +++++++++.+
T Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~p~~~t~~~~~~~~lvDPt~~Ee~~~~~~l~v~~~~~~~i~~~~~~G-~~~i~~~~l~~  268 (305)
T 2nn6_E          190 GSKDIELSDDPYDCIRLSVENVPCIVTLCKIGYRHVVDATLQEEACSLASLLVSVTSKGVVTCMRKVG-KGSLDPESIFE  268 (305)
T ss_dssp             ----EEEEESSCCCSCCCCTTCCCCEEEEESSSSEESSCCHHHHTSCSEEEEECCCSSSCCCEEEEEE-SSCBCHHHHHH
T ss_pred             CCEEEECCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEEECC-CCCCCHHHHHH
T ss_conf             30332034443544456535771578611234847758898999436853899992899899999269-97889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             99999999999999999997720
Q gi|254780630|r  219 MLNLAKDRIADLIKLQKDVISNE  241 (242)
Q Consensus       219 ~l~~a~~~~~~i~~~i~~~L~~~  241 (242)
                      |+++|+++|++++++++++|+++
T Consensus       269 ~i~~a~~~~~~l~~~l~~~L~~~  291 (305)
T 2nn6_E          269 MMETGKRVGKVLHASLQSVVHKE  291 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999999999888