HHsearch results for GI: 254780630 and protein with PDBid: 2nn6_F
>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00 E-value=1.4e-45 Score=274.20 Aligned_cols=221 Identities=16% Similarity=0.183 Sum_probs=189.1
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCC------------CCCCCCCCEEEEECCC
Q ss_conf 9678998011787999976632688289999689489999993332453101------------5543421100100555
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR------------NTKHGWITAEYGMLPR 68 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 68 (242)
+|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|+||++.+.... .+..+.+.+++.+.|+
T Consensus 26 ~R~DGR~~~e~R~i~i~~G~l~~a~GSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~ 105 (272)
T 2nn6_F 26 EAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPF 105 (272)
T ss_dssp ---CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEEEEEECTT
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCC
T ss_conf 68999897774676999797788874799998992999997568768743347763200013356663699999963886
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCC
Q ss_conf 65322233344447773102344443224210002200488022234420355576310100012221011001000001
Q gi|254780630|r 69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS 148 (242)
Q Consensus 69 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~ 148 (242)
+...+... +...+...++..+.+++++.++...++++.+.++++++++||++++++++|+++||.|+++|+.+..
T Consensus 106 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~i~v~~~vl~~dg~~~~a~i~aa~lAL~dagi~~~~~v 180 (272)
T 2nn6_F 106 AGRRRRAP-----PGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV 180 (272)
T ss_dssp SSSSCCCS-----CCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBSSCC
T ss_pred CCCCCCCC-----CCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf 64765477-----9972788988889876424566210787489998888537898488788889999986698630423
Q ss_pred CCCCEECCCCCCCCEEECC---CCCCCCEECCCCCCCCCCCEEEEEEE-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 4631011243783102004---54554100334310123430368887-5998689999218636868999999999999
Q gi|254780630|r 149 NKFQLSQVLKGHVAAISCG---MLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAK 224 (242)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~ 224 (242)
..+.+. ..++.+++||+.+||..+++.+++++ ++.+++|++++.|+ +.+ .+++.+|+++|.
T Consensus 181 -------------~~~~v~~~~~~~~~~ilDPt~~Ee~~~~~~l~va~~~~~~~i~~l~~~g~-~~~-~e~l~~~l~~a~ 245 (272)
T 2nn6_F 181 -------------VGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGE-GGL-TESWAEAVRLGL 245 (272)
T ss_dssp -------------EEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECC-SSC-TTTTHHHHHHHH
T ss_pred -------------EEEEEEEEECCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEECCC-CCC-HHHHHHHHHHHH
T ss_conf -------------25799998325663237860767742675459999179998799993368-678-999999999999
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 99999999999997720
Q gi|254780630|r 225 DRIADLIKLQKDVISNE 241 (242)
Q Consensus 225 ~~~~~i~~~i~~~L~~~ 241 (242)
++|++|+++|+++|+++
T Consensus 246 ~~~~~i~~~l~~~l~~~ 262 (272)
T 2nn6_F 246 EGCQRLYPVLQQSLVRA 262 (272)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999999998