HHsearch results for GI: 254780630 and protein with PDBid: 2nn6_F

>2nn6_F MTR3, exosome component 6; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
Probab=100.00  E-value=1.4e-45  Score=274.20  Aligned_cols=221  Identities=16%  Similarity=0.183  Sum_probs=189.1

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCC------------CCCCCCCCEEEEECCC
Q ss_conf             9678998011787999976632688289999689489999993332453101------------5543421100100555
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIR------------NTKHGWITAEYGMLPR   68 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~------------~~~~~~~~~~~~~~~~   68 (242)
                      +|+|||+++|+|++++++|++++|||||+|++|+|+|+|+|+||++.+....            .+..+.+.+++.+.|+
T Consensus        26 ~R~DGR~~~e~R~i~i~~G~l~~a~GSa~v~~G~T~Vl~~V~gp~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~  105 (272)
T 2nn6_F           26 EAPGTRDPTRLRPVYARAGLLSQAKGSAYLEAGGTKVLCAVSGPRQAEGGERGGGPAGAGGEAPAALRGRLLCDFRRAPF  105 (272)
T ss_dssp             ---CCCCSSCCCCCCCCCSCCSSSSEEECCCSSSCEEEEEEEEEECC-------------------CBCEEEEEEEECTT
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCEEEEEEEECCCC
T ss_conf             68999897774676999797788874799998992999997568768743347763200013356663699999963886


Q ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCC
Q ss_conf             65322233344447773102344443224210002200488022234420355576310100012221011001000001
Q gi|254780630|r   69 STGNRVKREAVSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCS  148 (242)
Q Consensus        69 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~  148 (242)
                      +...+...     +...+...++..+.+++++.++...++++.+.++++++++||++++++++|+++||.|+++|+.+..
T Consensus       106 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~i~v~~~vl~~dg~~~~a~i~aa~lAL~dagi~~~~~v  180 (272)
T 2nn6_F          106 AGRRRRAP-----PGGCEERELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV  180 (272)
T ss_dssp             SSSSCCCS-----CCHHHHHHHHHHHHHHHTTTBCSTTSBTCEEEEEEEEEECCSSHHHHHHHHHHHHHHHHCCCBSSCC
T ss_pred             CCCCCCCC-----CCCHHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCE
T ss_conf             64765477-----9972788988889876424566210787489998888537898488788889999986698630423


Q ss_pred             CCCCEECCCCCCCCEEECC---CCCCCCEECCCCCCCCCCCEEEEEEE-CCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf             4631011243783102004---54554100334310123430368887-5998689999218636868999999999999
Q gi|254780630|r  149 NKFQLSQVLKGHVAAISCG---MLCGYPIVDLDYGEDSTIDVDANFVM-TDSGHIVEVQGSAERATFSQDHFFAMLNLAK  224 (242)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~ee~~~~~~l~v~~-~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~  224 (242)
                                   ..+.+.   ..++.+++||+.+||..+++.+++++ ++.+++|++++.|+ +.+ .+++.+|+++|.
T Consensus       181 -------------~~~~v~~~~~~~~~~ilDPt~~Ee~~~~~~l~va~~~~~~~i~~l~~~g~-~~~-~e~l~~~l~~a~  245 (272)
T 2nn6_F          181 -------------VGCGLSLAPGPAPTWLLDPTRLEEERAAAGLTVALMPVLNQVAGLLGSGE-GGL-TESWAEAVRLGL  245 (272)
T ss_dssp             -------------EEEECCCCSCSSCCCCSSCCTTTGGGCSSEEEEEEETTTTEEEEEEEECC-SSC-TTTTHHHHHHHH
T ss_pred             -------------EEEEEEEEECCCCCCCCCCHHHHHHCCCCCEEEEEECCCCCEEEEEECCC-CCC-HHHHHHHHHHHH
T ss_conf             -------------25799998325663237860767742675459999179998799993368-678-999999999999


Q ss_pred             HHHHHHHHHHHHHHHHC
Q ss_conf             99999999999997720
Q gi|254780630|r  225 DRIADLIKLQKDVISNE  241 (242)
Q Consensus       225 ~~~~~i~~~i~~~L~~~  241 (242)
                      ++|++|+++|+++|+++
T Consensus       246 ~~~~~i~~~l~~~l~~~  262 (272)
T 2nn6_F          246 EGCQRLYPVLQQSLVRA  262 (272)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
T ss_conf             99999999999999998