HHsearch results for GI: 254780630 and protein with PDBid: 2wnr_A

>2wnr_A Probable exosome complex exonuclease 2; phosphate binding, 3'-5' exoribonuclease, hydrolase; 2.65A {Methanothermobacterthermautotrophicus}
Probab=100.00  E-value=5.6e-45  Score=270.22  Aligned_cols=232  Identities=19%  Similarity=0.306  Sum_probs=199.0

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS   80 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (242)
                      +|+|||+++|+|++++++|++++|+|||+|++|+|+|+|+|++|...+. ...+..+...+.....++....+..     
T Consensus        24 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~V~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----   97 (271)
T 2wnr_A           24 ERIDGRSLHEFRDISIETGVISKAEGSSRVKLGNTQIIVGVKPQIGEPF-PDTPEMGVILTNSELLPMASPTFEP-----   97 (271)
T ss_dssp             CCTTCCCTTCCCCEEEEESCSTTSSEEEEEEETTEEEEEEEEEEEECCC-TTCTTCCEEEEEEEECGGGCTTCCC-----
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEEECCCCCCCC-CCCCCCCEEEEEEEECCCCCCCCCC-----
T ss_conf             7799979888657499979778988489999689189999714667863-3467765378887623556667668-----


Q ss_pred             CCCCCCHHHHHHHHHHHH--------HHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCC-
Q ss_conf             477731023444432242--------10002200488022234420355576310100012221011001000001463-
Q gi|254780630|r   81 GRQGGRSQEIQRMIGRAL--------RSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKF-  151 (242)
Q Consensus        81 ~~~~~~~~~~~~~~~~~l--------~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~-  151 (242)
                      ++..++....++.+.+.+        ++.+....+++|++.++++++++||++++++++|+++||.++++|+.+...+. 
T Consensus        98 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~l~~~~~~~~~~I~i~v~vl~~DG~~~~a~i~A~~~AL~da~iP~~~~~~~~~  177 (271)
T 2wnr_A           98 GPPDERSVELSRVVDRCIRESRMIDLEKLCIIEGSKVWMLFLDLHIIDYDGNLFDAAVLATVAALLDTRIPAAEVEDGEV  177 (271)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEEEEEEEETTEE
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEE
T ss_conf             89975421777999999985220235761860468857999999997689997899999999999975898422456403


Q ss_pred             ------CEECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Q ss_conf             ------10112437831020045455410033431012343036888759986899992186368689999999999999
Q gi|254780630|r  152 ------QLSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKD  225 (242)
Q Consensus       152 ------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~  225 (242)
                            ....++..++..+.....++.++.||+.+|+..+++.++++++++|+++.+++.| +++++++++.+|+++|.+
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpt~~Ee~~~~~~~~v~~~~~g~i~~i~~~g-~~~l~~~~l~~~~~~a~~  256 (271)
T 2wnr_A          178 VINREKMQPLPVNRKALMCTFAKIGNEIVLDPSLEEEDILTARISIGVTEEGSICAMQKGG-EGPLTRDDVLKAVSIAVE  256 (271)
T ss_dssp             EEEEEEEEECCBCCCEEEEEEEEETTEEEESCCHHHHTTCSEEEEEEEETTSCEEEEEEES-SSCBCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCEEEECCCCCEEEECCCHHHHHCCCCEEEEEEECCCCEEEEEECC-CCCCCHHHHHHHHHHHHH
T ss_conf             5304412456656763215530319987304534334126836999993899899999488-968799999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             99999999999977
Q gi|254780630|r  226 RIADLIKLQKDVIS  239 (242)
Q Consensus       226 ~~~~i~~~i~~~L~  239 (242)
                      +|++|+++++++|+
T Consensus       257 ~~~~l~~~~~~~L~  270 (271)
T 2wnr_A          257 KVPQLIEYLDKSMT  270 (271)
T ss_dssp             HHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHCC
T ss_conf             99999999998739