HHsearch results for GI: 254780630 and protein with PDBid: 2wp8_A
>2wp8_A Exosome complex component RRP45; nucleus, hydrolase, cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.4e-45 Score=269.40 Aligned_cols=236 Identities=14% Similarity=0.142 Sum_probs=188.7
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS 80 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 80 (242)
+|+|||+++|+|++++++| +|+|||+|++|+|+|+|+|++|...|. ...++++.+.+.+.+.+++...+.......
T Consensus 23 ~R~DGR~~~e~R~i~i~~g---~a~GSa~v~~G~T~Vl~~V~~~~~~~~-~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~ 98 (305)
T 2wp8_A 23 YRLDGRSFDQFRDVEITFG---KEFGDVSVKMGNTKVHCRISCQIAQPY-EDRPFEGLFVISTEISPMAGSQFENGNITG 98 (305)
T ss_dssp CCTTSCCTTCCCCEEEEEC---SSTTEEEEEETTEEEEEEEEEEEC-CC-SSCTTCCEEEEEECCC--------------
T ss_pred CCCCCCCCCCCCCEEEEEC---CCCCEEEEEECCCEEEEEEECCCCCCH-HHCCCCCEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 8899989988558499977---998189999689199999986655846-548996517898640676677768889996
Q ss_pred CCCCCCHHHHHHHHHH----HHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCC------
Q ss_conf 4777310234444322----421000220048802223442035557631010001222101100100000146------
Q gi|254780630|r 81 GRQGGRSQEIQRMIGR----ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNK------ 150 (242)
Q Consensus 81 ~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~------ 150 (242)
.........+.+.+.+ .+.+.++...++.|.+.++++++++|||+++|+++|+.+||.++++|+......
T Consensus 99 ~~~~~~~~~l~~~l~~~~~~~~~~l~i~~~~~~w~i~i~v~VL~~dG~~~da~~~A~~~AL~~~~iP~v~v~~~~~~~~~ 178 (305)
T 2wp8_A 99 EDEVLCSRIIEKSVRRSGALDVEGLCIVAGSKCWAVRADVHFLDCDGGFIDASCIAVMAGLMHFKKPDITVHGEQIIVHP 178 (305)
T ss_dssp --------CHHHHHHHTTSBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHHCEECCCBCTTSSCCBCC
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCEEEC
T ss_conf 03677888999876320112322234456774268899999976999888899999999999639982541156424513
Q ss_pred ----CCEECCCCCCCCEEECC--------------CCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCC
Q ss_conf ----31011243783102004--------------545541003343101234303688875998689999218636868
Q gi|254780630|r 151 ----FQLSQVLKGHVAAISCG--------------MLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFS 212 (242)
Q Consensus 151 ----~~~~~~~~~~~~~~~~~--------------~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~ 212 (242)
......+.+.+.++++. ..++.++.||+.+||..+++.++++++++|++|++++.| +.+++
T Consensus 179 ~~~~~~~~l~~~~~p~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dpt~~Ee~~~~~~l~v~~~~~g~v~~~~~~g-~~~l~ 257 (305)
T 2wp8_A 179 VNEREPVPLGILHIPICVTFSFFNPQDTEENIKGETNSEISIIDATLKEELLRDGVLTVTLNKNREVVQVSKAG-GLPMD 257 (305)
T ss_dssp SSSSCCEECCBSCCCEEEEEEECC---------------CEEESCCHHHHHHCSEEEEEEECTTSEEEEEEEEE-EEEEC
T ss_pred CCCCCCCCCCHHCCCEEEEEEECCCCCCEEEEEEEECCCEEEECCCHHHHHCCCCEEEEEECCCCCEEEEEECC-CCCCC
T ss_conf 54244555332127153489864788860799997238758716878888204844999986999899998068-88879
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999999999999999999997720
Q gi|254780630|r 213 QDHFFAMLNLAKDRIADLIKLQKDVISNE 241 (242)
Q Consensus 213 ~~~l~~~l~~a~~~~~~i~~~i~~~L~~~ 241 (242)
.+++.+|+++|.++|++|+++++++|+++
T Consensus 258 ~~~l~~~i~~a~~~~~~l~~~l~~~l~~~ 286 (305)
T 2wp8_A 258 ALTLMKCCHEAYSIIEKITDQILQLLKED 286 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999878