HHsearch results for GI: 254780630 and protein with PDBid: 2wp8_B
>2wp8_B Exosome complex component SKI6; nucleus, hydrolase, cytoplasm, RNA-binding, RNA binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=0 Score=287.41 Aligned_cols=222 Identities=21% Similarity=0.239 Sum_probs=194.0
Q ss_pred CCCCCCCCCCEEEEEEEECCCCC-CCCEEEEEECCCEEEEEEEECCCCCCC-CCCCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 96789980117879999766326-882899996894899999933324531-0155434211001005556532223334
Q gi|254780630|r 1 MRLSGRQENQMREISLTRRVSKY-AEGSCLVKFGDTHLLTTATLEEKVPMW-IRNTKHGWITAEYGMLPRSTGNRVKREA 78 (242)
Q Consensus 1 iR~DGR~~~e~R~i~i~~g~~~~-a~GSa~v~~G~T~Vl~~V~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 78 (242)
+|+|||+++|+|+|++++|++++ |||||+|++|+|+|+|+|+||.+.+.. ...++.+.+.+++.+.|++...+...
T Consensus 12 ~R~DGR~~~e~R~i~i~~g~~~~~adGSa~v~~G~T~Vl~~V~gp~e~~~~~~~~~~~~~l~v~~~~~~~~~~~~~~~-- 89 (246)
T 2wp8_B 12 LRLDGRRWNELRRFESSINTHPHAADGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKALLNVSVNINKFSKFERSKS-- 89 (246)
T ss_dssp CCTTSCCTTCCCCEEEEECSCTTTCSEEEEEEETTEEEEEEEEEEEC------CCSSSEEEEEEEEEC------------
T ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCC--
T ss_conf 469996988855869996876787885899998998999999947555565446886179999997267664344455--
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCC
Q ss_conf 44477731023444432242100022004880222344203555763101000122210110010000014631011243
Q gi|254780630|r 79 VSGRQGGRSQEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLK 158 (242)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~ 158 (242)
..+..++..++++.+++++++.++++.+|+++|+++++++++||++++++++|+++||.|+++|+.
T Consensus 90 -~~~~~~~~~el~~~l~~~l~~~i~~~~~p~~~I~v~v~VL~~DG~~~~aai~Aa~~AL~dagIp~~------------- 155 (246)
T 2wp8_B 90 -SHKNERRVLEIQTSLVRMFEKNVMLNIYPRTVIDIEIHVLEQDGGIMGSLINGITLALIDAGISMF------------- 155 (246)
T ss_dssp -----CHHHHHHHHHHHHHHHHHBCTTTSCSEEEEEEEEEEECCSCHHHHHHHHHHHHHHHHTCCBS-------------
T ss_pred -CCCCCHHHHHHHHHHHHHCCCCCCHHHCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCC-------------
T ss_conf -799860567778999874066567656796579999999437998067778888899996699856-------------
Q ss_pred CCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78310200454554100334310123430368887599868999921863686899999999999999999999999997
Q gi|254780630|r 159 GHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVI 238 (242)
Q Consensus 159 ~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L 238 (242)
++++++++++.++.+++||+.+||........+.+++.++++++++.| .++.+++.+|+++|+++|++|+++|+++|
T Consensus 156 ~~v~avs~~~~~~~~lvDpt~~Ee~~~~~~~~~~~~~~~~i~~~~~~g---~~~~~~l~~~l~~a~~~~~~i~~~l~~~l 232 (246)
T 2wp8_B 156 DYISGISVGLYDTTPLLDTNSLEENAMSTVTLGVVGKSEKLSLLLVED---KIPLDRLENVLAIGIAGAHRVRDLMDEEL 232 (246)
T ss_dssp SCEEEEEEEEETTEEESSCCHHHHHHSEEEEEEEETTSSCEEEEEECS---CEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCEEEECCCHHHHHCCCCEEEEEECCCCEEEEEECCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 862007999987848889386897255965999958999799998269---95999999999999999999999999999
Q ss_pred HHC
Q ss_conf 720
Q gi|254780630|r 239 SNE 241 (242)
Q Consensus 239 ~~~ 241 (242)
+++
T Consensus 233 ~~~ 235 (246)
T 2wp8_B 233 RKH 235 (246)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999