HHsearch results for GI: 254780630 and protein with PDBid: 3krn_A

>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAse; 3.92A {Caenorhabditis elegans}
Probab=100.00  E-value=4.6e-41  Score=248.42  Aligned_cols=203  Identities=16%  Similarity=0.174  Sum_probs=172.3

Q ss_pred             CCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             01178799997663268828999968948999999333245310155434211001005556532223334444777310
Q gi|254780630|r    8 ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRS   87 (242)
Q Consensus         8 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~   87 (242)
                      .+|+|++++++|++++|||||+|++|||+|+|+|+||++.++....++.+.+.+.  +.|....             .++
T Consensus         2 a~e~R~i~i~~g~l~~adGSa~v~~G~T~Vla~V~gP~e~~~~~~~~~~~~~~v~--~~~~~~~-------------~~~   66 (222)
T 3krn_A            2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDIS--YRANCGD-------------NKF   66 (222)
T ss_dssp             -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC-------------CCC--SSCCCC---------------CC
T ss_pred             CCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCEEEE--CCCCCCC-------------CCH
T ss_conf             8676555999797899987999999990999999658774810036887002243--2678999-------------647


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECC
Q ss_conf             23444432242100022004880222344203555763101000122210110010000014631011243783102004
Q gi|254780630|r   88 QEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG  167 (242)
Q Consensus        88 ~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~  167 (242)
                      .++++.+++++++.+++..+|++.++++++++++||++++++++|+++||.++++|+.             +++++++++
T Consensus        67 ~~~~~~l~~~l~~~i~~~~~p~~~i~v~v~vl~~dG~~~~a~i~aa~lAL~~agip~~-------------~~v~a~~~~  133 (222)
T 3krn_A           67 NVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFE-------------TVFCGVLIV  133 (222)
T ss_dssp             SSCTTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTT-------------SCCCCCCCE
T ss_pred             HHHHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-------------CCCCEEEEE
T ss_conf             9999999757651018857698299999996466788317899989999996798633-------------575358999


Q ss_pred             CCCCCCEECCCCCCCCCCCEEEEEEE----CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             54554100334310123430368887----599868999921863686899999999999999999999999997720
Q gi|254780630|r  168 MLCGYPIVDLDYGEDSTIDVDANFVM----TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE  241 (242)
Q Consensus       168 ~~~~~~~~d~~~~ee~~~~~~l~v~~----~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~~  241 (242)
                      +.++.++.||+.+|+..+++.+++++    +...++++++..   |.++++++.+|+++|+++|+++++++|++|+++
T Consensus       134 ~~~~~~ilDPt~~Ee~~~~~~l~va~~~~~~~~~~i~~~~~~---G~~~~~~l~~~i~~a~~~~~~i~~~~k~~l~~~  208 (222)
T 3krn_A          134 RVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAI---GHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRK  208 (222)
T ss_dssp             ECSSSEESSCCTTTTTSCC-CCCCEECCCSSSSCCEEEECCB---SSCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             EECCEEEECCCHHHHHHCCCCEEEEEECCCCCCEEEEEEECC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             887868978898999617771799997899983199995057---882999999999999999999999999999986