HHsearch results for GI: 254780630 and protein with PDBid: 3krn_A
>3krn_A Protein C14A4.5, confirmed by transcript evidence; RNAse PH domain, homodimer, exosome, cell-death-related DNAse; 3.92A {Caenorhabditis elegans}
Probab=100.00 E-value=4.6e-41 Score=248.42 Aligned_cols=203 Identities=16% Similarity=0.174 Sum_probs=172.3
Q ss_pred CCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 01178799997663268828999968948999999333245310155434211001005556532223334444777310
Q gi|254780630|r 8 ENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVSGRQGGRS 87 (242)
Q Consensus 8 ~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 87 (242)
.+|+|++++++|++++|||||+|++|||+|+|+|+||++.++....++.+.+.+. +.|.... .++
T Consensus 2 a~e~R~i~i~~g~l~~adGSa~v~~G~T~Vla~V~gP~e~~~~~~~~~~~~~~v~--~~~~~~~-------------~~~ 66 (222)
T 3krn_A 2 AGRLREMRCELSFLKNADGSACFSQGATCIWASCSGPGDVHASKASDEAMTLDIS--YRANCGD-------------NKF 66 (222)
T ss_dssp -CCCCCBCCBSCCC----CCCBCCBTTCEEECCCCSSCC-------------CCC--SSCCCC---------------CC
T ss_pred CCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEEECCCCCCCCCCCCCCCCEEEE--CCCCCCC-------------CCH
T ss_conf 8676555999797899987999999990999999658774810036887002243--2678999-------------647
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCCEEECC
Q ss_conf 23444432242100022004880222344203555763101000122210110010000014631011243783102004
Q gi|254780630|r 88 QEIQRMIGRALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQLSQVLKGHVAAISCG 167 (242)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (242)
.++++.+++++++.+++..+|++.++++++++++||++++++++|+++||.++++|+. +++++++++
T Consensus 67 ~~~~~~l~~~l~~~i~~~~~p~~~i~v~v~vl~~dG~~~~a~i~aa~lAL~~agip~~-------------~~v~a~~~~ 133 (222)
T 3krn_A 67 NVLNNIIHSTLSNAINLELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFE-------------TVFCGVLIV 133 (222)
T ss_dssp SSCTTHHHHC--CCSCC-----CCCCCCCEEEECCSCHHHHHHHGGGTTTTTTTCCTT-------------SCCCCCCCE
T ss_pred HHHHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC-------------CCCCEEEEE
T ss_conf 9999999757651018857698299999996466788317899989999996798633-------------575358999
Q ss_pred CCCCCCEECCCCCCCCCCCEEEEEEE----CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 54554100334310123430368887----599868999921863686899999999999999999999999997720
Q gi|254780630|r 168 MLCGYPIVDLDYGEDSTIDVDANFVM----TDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIKLQKDVISNE 241 (242)
Q Consensus 168 ~~~~~~~~d~~~~ee~~~~~~l~v~~----~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~~i~~~L~~~ 241 (242)
+.++.++.||+.+|+..+++.+++++ +...++++++.. |.++++++.+|+++|+++|+++++++|++|+++
T Consensus 134 ~~~~~~ilDPt~~Ee~~~~~~l~va~~~~~~~~~~i~~~~~~---G~~~~~~l~~~i~~a~~~~~~i~~~~k~~l~~~ 208 (222)
T 3krn_A 134 RVKDELIIDPTAKQEAASTGRVLFSVCKGSDGHPEVCAMDAI---GHWDFIQLEAAWSLAQPSASAIFDFYKTVMKRK 208 (222)
T ss_dssp ECSSSEESSCCTTTTTSCC-CCCCEECCCSSSSCCEEEECCB---SSCTTHHHHTHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred EECCEEEECCCHHHHHHCCCCEEEEEECCCCCCEEEEEEECC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 887868978898999617771799997899983199995057---882999999999999999999999999999986