HHsearch results for GI: 254780630 and protein with PDBid: 3m7n_G

>3m7n_G Probable exosome complex exonuclease 2; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_H 2ba0_I 3m85_G
Probab=100.00  E-value=0  Score=277.20  Aligned_cols=230  Identities=20%  Similarity=0.247  Sum_probs=201.0

Q ss_pred             CCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf             96789980117879999766326882899996894899999933324531015543421100100555653222333444
Q gi|254780630|r    1 MRLSGRQENQMREISLTRRVSKYAEGSCLVKFGDTHLLTTATLEEKVPMWIRNTKHGWITAEYGMLPRSTGNRVKREAVS   80 (242)
Q Consensus         1 iR~DGR~~~e~R~i~i~~g~~~~a~GSa~v~~G~T~Vl~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~   80 (242)
                      +|+|||+++|+||+++++|++++|||||+|++|+|+|+|+|++|...+ ....+.++.+.+.+.+.++....+.....  
T Consensus        22 ~R~DGR~~~e~R~i~i~~g~l~~a~GSa~v~~G~T~V~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   98 (259)
T 3m7n_G           22 ERIDGRGFDEFRKVEIIPNVIEKAEGSALVKLGDTQVVVGVKMQPGEP-YPDTPDRGVIIVNAELVPLASPTFEPGPP--   98 (259)
T ss_dssp             CCTTCCCTTCCCCEEEEETSSTTSSEEEEEEETTEEEEEEEEEEEECC-CSSCTTSCEEEEEEECCTTSCTTCCSSSS--
T ss_pred             CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCEEEEEEECCCCCCC-CCCCCCCCEEEEEEECCCCCCCCCCCCCC--
T ss_conf             879896998842759996977898848999968837999842577786-12456654488876214555434137788--


Q ss_pred             CCCCCCHHHHHHHHHH--------HHHHHCCCCCCCCEEEEEEEEECCCCCCCCHHHHCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf             4777310234444322--------42100022004880222344203555763101000122210110010000014631
Q gi|254780630|r   81 GRQGGRSQEIQRMIGR--------ALRSVVDLSALGSRQIIIDCDVIQADGGTRTAAITGAWVALHDCLQHMEDCSNKFQ  152 (242)
Q Consensus        81 ~~~~~~~~~~~~~~~~--------~l~~~~~~~~~~~~~i~i~v~v~~~dg~~~~a~~~a~~~Al~~a~i~~~~~~~~~~  152 (242)
                         .......++.+++        .+++.++...++.|++.++++++++||++++|+++|+++||.++++|+........
T Consensus        99 ---~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~i~v~v~vl~~DG~~~~a~~~a~~~AL~~a~i~~~~~~~~~~  175 (259)
T 3m7n_G           99 ---DENSIELARVVDRGIRESEAVDLSKLVIEEGEKVWIVFVDIHALDDDGNLLDASALAAIAALMNTKVPAERFDLGED  175 (259)
T ss_dssp             ---CHHHHHHHHHHHHHHHHTTCBCGGGGEEETTTEEEEEEEEEEEEECSSCHHHHHHHHHHHHHHTCEECTGGGTSSSC
T ss_pred             ---CCHHHHHHHHHHCCCCHHHHCCHHHCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             ---83056777888631110000123433776678615899999997789984777889999999865754100002454


Q ss_pred             EECCCCCCCCEEECCCCCCCCEECCCCCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             01124378310200454554100334310123430368887599868999921863686899999999999999999999
Q gi|254780630|r  153 LSQVLKGHVAAISCGMLCGYPIVDLDYGEDSTIDVDANFVMTDSGHIVEVQGSAERATFSQDHFFAMLNLAKDRIADLIK  232 (242)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~ee~~~~~~l~v~~~~~~~i~~i~~~g~~~~~~~~~l~~~l~~a~~~~~~i~~  232 (242)
                      .++|+.+.++++++...++.++.||+.+|+..+++.++++++++++++.+++.| +.+++++++.+|+++|.++|+++++
T Consensus       176 ~~l~~~~~p~~~t~~~~~~~~l~Dpt~~Ee~~~~~~~~v~~~~~~~i~~~~~~g-~~~~~~~~l~~~i~~a~~~~~~l~~  254 (259)
T 3m7n_G          176 YLLPVRDLPVSVTSLIVGNKYLVDPSREEMSVGDTTLTITTDKDDNVVAMQKSG-GYLLDEKLFDELLDVSINCARKLRE  254 (259)
T ss_dssp             EECCBCCCCEEEEEEEETTEEEESCCTTGGGGCSCEEEEEECTTSCEEEEEEES-SCCBCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHCCCEEEEEECCCCCEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             457645875313665444468607998899645956999991899899999178-9777999999999999999999999


Q ss_pred             HHHHH
Q ss_conf             99999
Q gi|254780630|r  233 LQKDV  237 (242)
Q Consensus       233 ~i~~~  237 (242)
                      ++|+.
T Consensus       255 ~~~ei  259 (259)
T 3m7n_G          255 KFKEI  259 (259)
T ss_dssp             TTC--
T ss_pred             HHHCC
T ss_conf             99639